Query 010548
Match_columns 507
No_of_seqs 589 out of 4019
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 01:49:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1707 Predicted Ras related/ 100.0 6.2E-92 1.3E-96 703.0 39.9 499 4-507 1-505 (625)
2 COG1160 Predicted GTPases [Gen 100.0 4.7E-37 1E-41 304.6 21.5 149 13-175 4-164 (444)
3 PRK03003 GTP-binding protein D 100.0 2.1E-32 4.5E-37 287.1 24.8 151 11-175 37-198 (472)
4 TIGR03594 GTPase_EngA ribosome 100.0 1.1E-30 2.4E-35 272.6 23.3 147 14-174 1-158 (429)
5 PRK00093 GTP-binding protein D 100.0 1.2E-29 2.5E-34 265.2 24.2 147 13-173 2-159 (435)
6 PRK09518 bifunctional cytidyla 100.0 1.3E-29 2.8E-34 277.9 24.6 150 12-175 275-435 (712)
7 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.8E-29 3.8E-34 222.1 15.0 168 8-179 5-175 (205)
8 KOG0092 GTPase Rab5/YPT51 and 100.0 2.3E-29 5.1E-34 220.5 14.7 165 10-179 3-170 (200)
9 KOG0078 GTP-binding protein SE 100.0 7.6E-29 1.7E-33 221.7 16.4 173 1-178 1-176 (207)
10 PF08356 EF_assoc_2: EF hand a 100.0 1.6E-29 3.5E-34 196.5 7.8 89 227-315 1-89 (89)
11 cd04133 Rop_like Rop subfamily 100.0 5.9E-28 1.3E-32 220.2 17.9 164 13-178 2-175 (176)
12 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2.3E-28 5.1E-33 213.9 14.2 166 9-179 19-188 (221)
13 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 6.6E-28 1.4E-32 221.2 17.7 164 10-176 3-180 (182)
14 cd01875 RhoG RhoG subfamily. 100.0 1.6E-27 3.5E-32 220.9 17.7 168 11-179 2-180 (191)
15 KOG0080 GTPase Rab18, small G 100.0 7.3E-28 1.6E-32 203.4 13.4 169 7-180 6-178 (209)
16 cd04131 Rnd Rnd subfamily. Th 100.0 1.6E-27 3.5E-32 218.1 17.0 162 12-176 1-176 (178)
17 cd04121 Rab40 Rab40 subfamily. 100.0 3.1E-27 6.7E-32 217.8 18.4 163 10-177 4-168 (189)
18 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 4.3E-27 9.4E-32 222.6 18.8 167 9-178 10-190 (232)
19 KOG0098 GTPase Rab2, small G p 100.0 1.9E-27 4.1E-32 206.5 14.4 163 10-177 4-169 (216)
20 cd01874 Cdc42 Cdc42 subfamily. 100.0 4.2E-27 9.1E-32 215.0 17.5 161 13-175 2-174 (175)
21 cd04120 Rab12 Rab12 subfamily. 99.9 1.1E-26 2.4E-31 216.2 18.0 161 13-177 1-164 (202)
22 KOG0394 Ras-related GTPase [Ge 99.9 2.7E-27 6E-32 205.2 12.4 173 4-179 1-181 (210)
23 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 1.7E-26 3.8E-31 217.4 18.9 169 12-181 1-181 (222)
24 cd01893 Miro1 Miro1 subfamily. 99.9 2.2E-26 4.7E-31 208.5 18.8 165 13-177 1-165 (166)
25 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 2.2E-26 4.7E-31 209.7 17.6 162 12-178 2-166 (172)
26 cd01871 Rac1_like Rac1-like su 99.9 2.6E-26 5.7E-31 209.5 17.1 160 13-174 2-173 (174)
27 KOG0079 GTP-binding protein H- 99.9 6E-27 1.3E-31 195.1 10.8 162 10-176 6-169 (198)
28 cd04134 Rho3 Rho3 subfamily. 99.9 3.9E-26 8.5E-31 211.3 17.6 167 13-180 1-178 (189)
29 cd04122 Rab14 Rab14 subfamily. 99.9 1E-25 2.2E-30 204.0 17.9 160 12-176 2-164 (166)
30 PLN03071 GTP-binding nuclear p 99.9 2.6E-25 5.7E-30 210.3 21.3 162 10-178 11-174 (219)
31 cd04136 Rap_like Rap-like subf 99.9 9.3E-26 2E-30 203.3 17.3 159 12-175 1-162 (163)
32 smart00174 RHO Rho (Ras homolo 99.9 1E-25 2.3E-30 205.4 16.2 162 15-177 1-173 (174)
33 cd04175 Rap1 Rap1 subgroup. T 99.9 1.8E-25 4E-30 201.8 17.5 159 12-175 1-162 (164)
34 cd04140 ARHI_like ARHI subfami 99.9 2.2E-25 4.7E-30 201.7 17.6 156 13-173 2-162 (165)
35 cd04126 Rab20 Rab20 subfamily. 99.9 2.9E-25 6.3E-30 209.0 18.5 159 13-176 1-190 (220)
36 cd01865 Rab3 Rab3 subfamily. 99.9 2.9E-25 6.3E-30 200.8 17.6 159 13-176 2-163 (165)
37 cd01867 Rab8_Rab10_Rab13_like 99.9 3.4E-25 7.4E-30 200.8 17.9 160 12-176 3-165 (167)
38 PTZ00369 Ras-like protein; Pro 99.9 2.7E-25 5.9E-30 205.7 17.5 163 11-178 4-169 (189)
39 cd04103 Centaurin_gamma Centau 99.9 2.7E-25 5.9E-30 199.4 16.9 153 13-174 1-157 (158)
40 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 2.7E-25 5.9E-30 207.8 17.4 162 13-178 1-170 (201)
41 cd04117 Rab15 Rab15 subfamily. 99.9 3.5E-25 7.7E-30 199.5 17.2 157 13-174 1-160 (161)
42 KOG0093 GTPase Rab3, small G p 99.9 1.4E-25 3E-30 186.9 13.1 163 11-178 20-185 (193)
43 cd04127 Rab27A Rab27a subfamil 99.9 3.5E-25 7.6E-30 203.2 17.3 161 11-176 3-177 (180)
44 cd04176 Rap2 Rap2 subgroup. T 99.9 4.6E-25 9.9E-30 199.0 17.6 159 12-175 1-162 (163)
45 cd04144 Ras2 Ras2 subfamily. 99.9 3.4E-25 7.3E-30 205.2 16.7 160 14-178 1-165 (190)
46 cd04124 RabL2 RabL2 subfamily. 99.9 5.4E-25 1.2E-29 198.3 17.3 157 13-177 1-159 (161)
47 cd01873 RhoBTB RhoBTB subfamil 99.9 5.3E-25 1.1E-29 204.1 17.6 157 12-174 2-194 (195)
48 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 7E-25 1.5E-29 198.4 17.9 160 12-176 2-164 (166)
49 cd00877 Ran Ran (Ras-related n 99.9 6.7E-25 1.5E-29 198.7 17.7 158 13-177 1-160 (166)
50 cd04119 RJL RJL (RabJ-Like) su 99.9 7.1E-25 1.5E-29 198.2 17.7 159 13-176 1-167 (168)
51 cd04145 M_R_Ras_like M-Ras/R-R 99.9 8.9E-25 1.9E-29 197.0 18.0 159 12-175 2-163 (164)
52 KOG0087 GTPase Rab11/YPT3, sma 99.9 3.6E-25 7.9E-30 196.9 14.8 165 7-176 9-176 (222)
53 cd04132 Rho4_like Rho4-like su 99.9 6.7E-25 1.5E-29 202.6 17.3 164 13-178 1-169 (187)
54 cd04138 H_N_K_Ras_like H-Ras/N 99.9 9.9E-25 2.2E-29 196.0 17.9 158 12-175 1-161 (162)
55 cd04128 Spg1 Spg1p. Spg1p (se 99.9 7.4E-25 1.6E-29 201.3 17.3 161 13-177 1-167 (182)
56 smart00173 RAS Ras subfamily o 99.9 9.7E-25 2.1E-29 197.0 17.6 158 13-175 1-161 (164)
57 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1E-24 2.2E-29 198.3 17.4 160 14-176 2-165 (170)
58 cd04106 Rab23_lke Rab23-like s 99.9 9E-25 2E-29 196.7 16.7 157 13-174 1-161 (162)
59 cd04110 Rab35 Rab35 subfamily. 99.9 1.4E-24 3.1E-29 202.5 18.4 163 11-178 5-169 (199)
60 cd04135 Tc10 TC10 subfamily. 99.9 1.1E-24 2.4E-29 198.7 16.7 162 13-175 1-173 (174)
61 cd01864 Rab19 Rab19 subfamily. 99.9 1.8E-24 3.8E-29 195.6 17.1 160 11-174 2-164 (165)
62 cd04109 Rab28 Rab28 subfamily. 99.9 1.5E-24 3.3E-29 204.8 17.3 161 13-178 1-168 (215)
63 cd01868 Rab11_like Rab11-like. 99.9 2.2E-24 4.8E-29 194.9 17.6 159 12-175 3-164 (165)
64 PF00071 Ras: Ras family; Int 99.9 9.7E-25 2.1E-29 196.5 15.0 158 14-176 1-161 (162)
65 cd04112 Rab26 Rab26 subfamily. 99.9 2.1E-24 4.6E-29 200.1 17.5 161 13-178 1-165 (191)
66 cd04142 RRP22 RRP22 subfamily. 99.9 2.8E-24 6.1E-29 200.0 18.4 163 13-179 1-177 (198)
67 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.6E-24 3.5E-29 197.6 16.4 158 13-173 1-171 (173)
68 PLN03110 Rab GTPase; Provision 99.9 3.3E-24 7.1E-29 202.6 18.6 172 1-177 1-175 (216)
69 cd01866 Rab2 Rab2 subfamily. 99.9 3.5E-24 7.6E-29 194.4 18.0 160 12-176 4-166 (168)
70 KOG0088 GTPase Rab21, small G 99.9 2.9E-25 6.3E-30 187.1 9.2 164 9-177 10-176 (218)
71 cd04143 Rhes_like Rhes_like su 99.9 4.5E-24 9.7E-29 204.8 18.2 164 13-180 1-175 (247)
72 cd04148 RGK RGK subfamily. Th 99.9 7.3E-24 1.6E-28 200.7 19.4 184 13-203 1-200 (221)
73 cd04116 Rab9 Rab9 subfamily. 99.9 4E-24 8.6E-29 194.3 16.9 159 11-174 4-169 (170)
74 cd04113 Rab4 Rab4 subfamily. 99.9 4.1E-24 9E-29 192.3 16.8 157 13-174 1-160 (161)
75 cd01870 RhoA_like RhoA-like su 99.9 5.1E-24 1.1E-28 194.4 17.4 162 13-175 2-174 (175)
76 cd04101 RabL4 RabL4 (Rab-like4 99.9 6E-24 1.3E-28 191.8 17.4 158 13-175 1-163 (164)
77 cd04125 RabA_like RabA-like su 99.9 5.8E-24 1.2E-28 196.7 17.6 160 13-177 1-163 (188)
78 cd01892 Miro2 Miro2 subfamily. 99.9 5.4E-24 1.2E-28 193.4 16.9 163 10-177 2-167 (169)
79 cd04149 Arf6 Arf6 subfamily. 99.9 2.6E-24 5.6E-29 195.2 14.8 157 10-173 7-167 (168)
80 cd04111 Rab39 Rab39 subfamily. 99.9 7E-24 1.5E-28 199.5 18.2 160 12-176 2-166 (211)
81 smart00176 RAN Ran (Ras-relate 99.9 4.7E-24 1E-28 198.2 16.4 154 18-178 1-156 (200)
82 cd04177 RSR1 RSR1 subgroup. R 99.9 9.3E-24 2E-28 191.6 18.0 161 12-176 1-164 (168)
83 cd04146 RERG_RasL11_like RERG/ 99.9 4.7E-24 1E-28 192.8 15.8 157 14-175 1-163 (165)
84 KOG0393 Ras-related small GTPa 99.9 8.4E-25 1.8E-29 196.9 10.0 168 11-180 3-183 (198)
85 KOG0091 GTPase Rab39, small G 99.9 7.2E-24 1.6E-28 179.8 14.6 163 9-176 5-173 (213)
86 cd04118 Rab24 Rab24 subfamily. 99.9 1.5E-23 3.2E-28 194.7 17.8 162 13-177 1-167 (193)
87 PLN03118 Rab family protein; P 99.9 1.8E-23 3.8E-28 197.0 18.4 166 9-178 11-179 (211)
88 cd01860 Rab5_related Rab5-rela 99.9 1.9E-23 4.2E-28 188.2 17.6 159 12-175 1-162 (163)
89 smart00175 RAB Rab subfamily o 99.9 1.9E-23 4.1E-28 188.3 17.3 159 13-176 1-162 (164)
90 cd04115 Rab33B_Rab33A Rab33B/R 99.9 1.6E-23 3.5E-28 190.4 17.0 159 12-175 2-168 (170)
91 cd01861 Rab6 Rab6 subfamily. 99.9 2.2E-23 4.7E-28 187.5 17.3 157 13-174 1-160 (161)
92 KOG0095 GTPase Rab30, small G 99.9 3.5E-24 7.6E-29 178.8 10.9 162 10-176 5-169 (213)
93 cd00157 Rho Rho (Ras homology) 99.9 1.8E-23 3.8E-28 189.9 15.9 160 13-173 1-170 (171)
94 KOG0086 GTPase Rab4, small G p 99.9 1.1E-23 2.4E-28 176.6 12.7 166 8-178 5-173 (214)
95 cd04129 Rho2 Rho2 subfamily. 99.9 3.4E-23 7.3E-28 191.3 17.5 162 13-176 2-173 (187)
96 PLN00223 ADP-ribosylation fact 99.9 1.9E-23 4.2E-28 191.8 15.7 157 10-176 15-178 (181)
97 cd01862 Rab7 Rab7 subfamily. 99.9 3.9E-23 8.6E-28 187.8 17.5 162 13-178 1-169 (172)
98 smart00177 ARF ARF-like small 99.9 2.4E-23 5.3E-28 190.2 16.1 160 10-175 11-173 (175)
99 cd04150 Arf1_5_like Arf1-Arf5- 99.9 2E-23 4.4E-28 187.6 15.3 155 13-173 1-158 (159)
100 cd04158 ARD1 ARD1 subfamily. 99.9 3.8E-23 8.2E-28 187.8 16.8 156 14-177 1-162 (169)
101 cd04139 RalA_RalB RalA/RalB su 99.9 6.5E-23 1.4E-27 184.7 17.8 158 13-175 1-161 (164)
102 cd04123 Rab21 Rab21 subfamily. 99.9 7.1E-23 1.5E-27 183.9 17.7 158 13-175 1-161 (162)
103 PLN03108 Rab family protein; P 99.9 7.2E-23 1.6E-27 192.6 18.0 162 11-177 5-169 (210)
104 PTZ00133 ADP-ribosylation fact 99.9 4.9E-23 1.1E-27 189.3 15.9 161 10-176 15-178 (182)
105 cd01863 Rab18 Rab18 subfamily. 99.9 1.3E-22 2.9E-27 182.4 17.9 156 13-174 1-160 (161)
106 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 3.7E-23 8.1E-28 186.8 14.1 154 15-173 2-163 (164)
107 cd04114 Rab30 Rab30 subfamily. 99.9 2E-22 4.2E-27 182.8 18.2 161 10-175 5-168 (169)
108 PTZ00132 GTP-binding nuclear p 99.9 6.9E-22 1.5E-26 186.8 21.8 167 7-180 4-172 (215)
109 cd04154 Arl2 Arl2 subfamily. 99.9 1.6E-22 3.5E-27 184.3 15.9 156 10-173 12-172 (173)
110 cd04157 Arl6 Arl6 subfamily. 99.9 9.6E-23 2.1E-27 183.4 13.9 153 14-173 1-161 (162)
111 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 2.8E-22 6E-27 184.5 16.5 160 12-176 3-170 (183)
112 cd04147 Ras_dva Ras-dva subfam 99.9 3.7E-22 8.1E-27 186.1 17.1 159 14-176 1-163 (198)
113 cd04151 Arl1 Arl1 subfamily. 99.9 2.6E-22 5.7E-27 180.1 14.9 154 14-173 1-157 (158)
114 cd00876 Ras Ras family. The R 99.9 4.2E-22 9.1E-27 178.5 16.3 156 14-174 1-159 (160)
115 cd04137 RheB Rheb (Ras Homolog 99.9 5.7E-22 1.2E-26 181.9 17.3 161 13-177 2-164 (180)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 3.9E-22 8.4E-27 182.1 15.6 157 11-173 14-173 (174)
117 KOG0081 GTPase Rab27, small G 99.9 1.5E-23 3.2E-28 177.0 5.3 163 10-177 7-182 (219)
118 cd00154 Rab Rab family. Rab G 99.9 6.7E-22 1.4E-26 176.4 16.0 155 13-172 1-158 (159)
119 KOG0395 Ras-related GTPase [Ge 99.9 5.9E-22 1.3E-26 182.7 15.1 162 11-177 2-166 (196)
120 cd04161 Arl2l1_Arl13_like Arl2 99.9 4.1E-22 8.8E-27 180.6 13.2 156 14-173 1-166 (167)
121 cd04156 ARLTS1 ARLTS1 subfamil 99.9 5.4E-22 1.2E-26 178.2 13.7 154 14-173 1-159 (160)
122 COG0486 ThdF Predicted GTPase 99.9 1.6E-21 3.5E-26 194.6 17.5 220 7-243 212-447 (454)
123 KOG0097 GTPase Rab14, small G 99.9 7.9E-22 1.7E-26 163.2 12.0 164 9-177 8-174 (215)
124 KOG0083 GTPase Rab26/Rab37, sm 99.9 3.9E-23 8.4E-28 169.4 3.9 156 17-177 2-161 (192)
125 smart00178 SAR Sar1p-like memb 99.9 2.5E-21 5.5E-26 178.3 16.3 158 10-174 15-183 (184)
126 cd00879 Sar1 Sar1 subfamily. 99.9 2.5E-21 5.4E-26 179.2 16.4 157 10-174 17-189 (190)
127 cd00878 Arf_Arl Arf (ADP-ribos 99.9 3.5E-21 7.6E-26 172.6 16.0 153 14-173 1-157 (158)
128 cd04160 Arfrp1 Arfrp1 subfamil 99.9 3.6E-21 7.8E-26 174.1 15.3 155 14-173 1-166 (167)
129 cd04102 RabL3 RabL3 (Rab-like3 99.9 5.7E-21 1.2E-25 177.4 15.4 147 13-163 1-177 (202)
130 PRK05291 trmE tRNA modificatio 99.9 6.4E-21 1.4E-25 198.2 17.2 214 10-244 213-443 (449)
131 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.4E-20 2.9E-25 194.6 17.3 217 9-244 200-436 (442)
132 cd01890 LepA LepA subfamily. 99.8 1.7E-20 3.7E-25 171.8 15.8 154 14-175 2-176 (179)
133 cd01897 NOG NOG1 is a nucleola 99.8 2E-20 4.4E-25 169.4 16.1 152 14-175 2-167 (168)
134 cd04159 Arl10_like Arl10-like 99.8 1.7E-20 3.8E-25 167.3 15.0 154 14-173 1-158 (159)
135 KOG4252 GTP-binding protein [S 99.8 1E-21 2.2E-26 169.2 6.3 168 4-176 12-181 (246)
136 KOG0084 GTPase Rab1/YPT1, smal 99.8 3.8E-21 8.1E-26 169.7 9.1 86 420-507 6-91 (205)
137 cd04155 Arl3 Arl3 subfamily. 99.8 3.7E-20 8E-25 168.6 14.6 155 9-173 11-172 (173)
138 cd01898 Obg Obg subfamily. Th 99.8 6.1E-20 1.3E-24 166.5 15.6 153 14-174 2-169 (170)
139 TIGR00436 era GTP-binding prot 99.8 8.8E-20 1.9E-24 178.2 17.8 162 14-187 2-174 (270)
140 cd04171 SelB SelB subfamily. 99.8 4.4E-20 9.6E-25 166.1 14.1 158 13-173 1-163 (164)
141 COG1159 Era GTPase [General fu 99.8 1.9E-19 4.1E-24 170.2 17.8 158 10-176 4-172 (298)
142 PF00025 Arf: ADP-ribosylation 99.8 2.7E-20 5.9E-25 169.8 11.5 159 10-175 12-175 (175)
143 PRK15494 era GTPase Era; Provi 99.8 1.5E-19 3.3E-24 181.4 17.7 168 10-189 50-228 (339)
144 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1E-19 2.2E-24 164.6 14.6 154 14-175 2-165 (168)
145 TIGR02528 EutP ethanolamine ut 99.8 4.6E-20 1E-24 162.4 11.4 135 14-172 2-141 (142)
146 PRK12299 obgE GTPase CgtA; Rev 99.8 2.3E-19 5.1E-24 178.9 16.5 156 13-176 159-328 (335)
147 PF02421 FeoB_N: Ferrous iron 99.8 5.6E-20 1.2E-24 161.8 9.3 145 13-171 1-156 (156)
148 PLN00023 GTP-binding protein; 99.8 2.8E-19 6E-24 173.9 15.0 141 8-149 17-189 (334)
149 COG1160 Predicted GTPases [Gen 99.8 5.7E-19 1.2E-23 176.1 15.5 159 11-176 177-351 (444)
150 COG1100 GTPase SAR1 and relate 99.8 9.7E-19 2.1E-23 165.6 15.9 167 11-178 4-187 (219)
151 TIGR00231 small_GTP small GTP- 99.8 1.2E-18 2.6E-23 154.8 15.6 155 12-171 1-159 (161)
152 PRK04213 GTP-binding protein; 99.8 3.5E-19 7.5E-24 166.5 12.6 155 9-176 6-192 (201)
153 PRK03003 GTP-binding protein D 99.8 5E-19 1.1E-23 186.0 15.0 157 11-176 210-382 (472)
154 cd00881 GTP_translation_factor 99.8 7.5E-19 1.6E-23 162.0 14.5 158 14-175 1-186 (189)
155 cd01878 HflX HflX subfamily. 99.8 7.6E-19 1.6E-23 164.6 14.6 154 10-174 39-203 (204)
156 cd01891 TypA_BipA TypA (tyrosi 99.8 1.5E-18 3.2E-23 161.3 15.7 150 13-167 3-173 (194)
157 cd01879 FeoB Ferrous iron tran 99.8 1.7E-18 3.7E-23 154.9 14.8 144 17-174 1-155 (158)
158 TIGR03156 GTP_HflX GTP-binding 99.8 1.1E-18 2.4E-23 175.4 15.1 152 11-174 188-350 (351)
159 KOG0080 GTPase Rab18, small G 99.8 4.1E-19 8.9E-24 150.6 9.5 85 421-507 9-93 (209)
160 cd04170 EF-G_bact Elongation f 99.8 1.6E-18 3.4E-23 169.3 14.9 227 14-248 1-267 (268)
161 cd01895 EngA2 EngA2 subfamily. 99.8 4.1E-18 8.8E-23 154.5 16.4 156 12-174 2-173 (174)
162 PRK15467 ethanolamine utilizat 99.8 1.4E-18 3E-23 155.8 12.9 140 14-175 3-146 (158)
163 KOG0073 GTP-binding ADP-ribosy 99.8 5.4E-18 1.2E-22 144.7 15.5 162 10-176 14-178 (185)
164 cd01894 EngA1 EngA1 subfamily. 99.8 2.1E-18 4.5E-23 154.0 13.7 145 16-174 1-156 (157)
165 cd01889 SelB_euk SelB subfamil 99.8 1.8E-18 3.8E-23 160.5 13.6 162 13-178 1-188 (192)
166 TIGR02729 Obg_CgtA Obg family 99.8 2.7E-18 5.9E-23 171.2 15.8 156 13-175 158-328 (329)
167 TIGR03594 GTPase_EngA ribosome 99.8 3.9E-18 8.5E-23 178.1 17.4 159 10-176 170-344 (429)
168 PRK00089 era GTPase Era; Revie 99.8 1.2E-17 2.5E-22 165.4 18.6 165 11-185 4-179 (292)
169 cd01886 EF-G Elongation factor 99.8 8.4E-18 1.8E-22 163.3 16.6 224 14-248 1-269 (270)
170 PTZ00099 rab6; Provisional 99.8 6.9E-18 1.5E-22 153.9 15.1 139 36-179 4-145 (176)
171 KOG0070 GTP-binding ADP-ribosy 99.8 3E-18 6.4E-23 150.6 11.9 163 9-176 14-178 (181)
172 KOG0095 GTPase Rab30, small G 99.8 1.1E-18 2.4E-23 145.9 8.8 85 421-507 5-89 (213)
173 cd04164 trmE TrmE (MnmE, ThdF, 99.8 7.4E-18 1.6E-22 150.3 14.7 145 13-175 2-156 (157)
174 PRK00454 engB GTP-binding prot 99.8 6.3E-18 1.4E-22 157.2 14.7 165 4-175 16-193 (196)
175 TIGR03598 GTPase_YsxC ribosome 99.8 4.3E-18 9.3E-23 156.1 13.1 152 9-165 15-179 (179)
176 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 1.4E-18 3.1E-23 152.7 9.1 84 422-507 21-104 (221)
177 PRK12298 obgE GTPase CgtA; Rev 99.8 1.9E-17 4.1E-22 168.4 18.6 157 14-177 161-334 (390)
178 cd04168 TetM_like Tet(M)-like 99.8 2.4E-17 5.2E-22 157.3 17.7 202 14-248 1-236 (237)
179 cd01881 Obg_like The Obg-like 99.8 6.2E-18 1.3E-22 154.0 13.1 149 17-174 1-175 (176)
180 PF08477 Miro: Miro-like prote 99.8 3.5E-18 7.6E-23 145.5 10.6 113 14-126 1-119 (119)
181 KOG0075 GTP-binding ADP-ribosy 99.8 1.5E-18 3.3E-23 145.0 7.9 155 11-175 19-181 (186)
182 PRK12297 obgE GTPase CgtA; Rev 99.8 1.9E-17 4.1E-22 169.2 17.2 152 14-177 160-328 (424)
183 KOG0092 GTPase Rab5/YPT51 and 99.8 2.5E-18 5.5E-23 151.3 8.9 84 422-507 4-87 (200)
184 cd04163 Era Era subfamily. Er 99.7 2.5E-17 5.5E-22 148.0 15.3 155 11-174 2-167 (168)
185 KOG0098 GTPase Rab2, small G p 99.7 5.4E-18 1.2E-22 147.8 9.5 85 421-507 4-88 (216)
186 KOG0086 GTPase Rab4, small G p 99.7 2.7E-18 5.8E-23 144.3 7.0 87 419-507 5-91 (214)
187 PRK00093 GTP-binding protein D 99.7 1.7E-17 3.7E-22 173.5 14.9 156 11-175 172-343 (435)
188 cd00882 Ras_like_GTPase Ras-li 99.7 2.9E-17 6.4E-22 144.4 14.0 153 17-172 1-156 (157)
189 PRK11058 GTPase HflX; Provisio 99.7 3.9E-17 8.4E-22 168.0 16.5 154 13-176 198-362 (426)
190 KOG3883 Ras family small GTPas 99.7 1.6E-16 3.4E-21 133.9 16.3 168 8-180 5-179 (198)
191 cd04169 RF3 RF3 subfamily. Pe 99.7 4.9E-17 1.1E-21 157.7 15.2 223 13-248 3-266 (267)
192 KOG1191 Mitochondrial GTPase [ 99.7 4.3E-17 9.3E-22 162.4 15.0 231 10-245 266-526 (531)
193 KOG0078 GTP-binding protein SE 99.7 1E-17 2.2E-22 150.3 9.4 87 419-507 8-94 (207)
194 KOG0394 Ras-related GTPase [Ge 99.7 5E-18 1.1E-22 147.8 6.7 85 421-507 7-91 (210)
195 PRK09518 bifunctional cytidyla 99.7 5.1E-17 1.1E-21 178.7 16.0 157 11-176 449-621 (712)
196 KOG0087 GTPase Rab11/YPT3, sma 99.7 1.1E-17 2.4E-22 149.3 8.7 88 418-507 9-96 (222)
197 PRK12296 obgE GTPase CgtA; Rev 99.7 5.1E-17 1.1E-21 167.9 14.9 157 12-177 159-341 (500)
198 PF00009 GTP_EFTU: Elongation 99.7 4E-17 8.6E-22 150.9 12.7 157 11-175 2-186 (188)
199 TIGR00487 IF-2 translation ini 99.7 5.9E-17 1.3E-21 172.5 15.8 156 10-173 85-247 (587)
200 CHL00189 infB translation init 99.7 4.9E-17 1.1E-21 175.4 15.2 162 9-175 241-409 (742)
201 cd01888 eIF2_gamma eIF2-gamma 99.7 6.8E-17 1.5E-21 151.1 14.1 164 13-178 1-201 (203)
202 TIGR01393 lepA GTP-binding pro 99.7 1E-16 2.2E-21 171.6 17.1 160 12-179 3-183 (595)
203 KOG0079 GTP-binding protein H- 99.7 8.7E-18 1.9E-22 140.5 6.2 84 422-507 7-90 (198)
204 PRK05306 infB translation init 99.7 1.4E-16 3E-21 173.6 16.3 157 9-173 287-449 (787)
205 PRK09554 feoB ferrous iron tra 99.7 2.7E-16 5.9E-21 172.2 18.6 151 11-175 2-167 (772)
206 cd04105 SR_beta Signal recogni 99.7 3.5E-16 7.5E-21 146.2 15.5 117 14-130 2-124 (203)
207 TIGR00475 selB selenocysteine- 99.7 1.5E-16 3.3E-21 170.2 14.7 157 13-176 1-166 (581)
208 KOG0071 GTP-binding ADP-ribosy 99.7 1.6E-16 3.5E-21 131.9 11.3 162 10-175 15-177 (180)
209 TIGR00157 ribosome small subun 99.7 4.8E-16 1E-20 149.0 13.5 94 70-171 24-118 (245)
210 TIGR00491 aIF-2 translation in 99.7 7.3E-16 1.6E-20 163.9 15.9 158 12-173 4-213 (590)
211 cd04166 CysN_ATPS CysN_ATPS su 99.7 4.5E-16 9.7E-21 146.1 12.7 151 14-167 1-185 (208)
212 cd00880 Era_like Era (E. coli 99.7 6.2E-16 1.4E-20 137.4 13.1 151 17-174 1-162 (163)
213 cd01884 EF_Tu EF-Tu subfamily. 99.7 9.2E-16 2E-20 142.0 14.5 150 12-165 2-172 (195)
214 PF08355 EF_assoc_1: EF hand a 99.7 6.5E-17 1.4E-21 122.9 5.5 70 349-418 1-75 (76)
215 KOG0096 GTPase Ran/TC4/GSP1 (n 99.7 2.5E-16 5.4E-21 137.8 9.5 163 10-179 8-172 (216)
216 COG0218 Predicted GTPase [Gene 99.7 1.9E-15 4.1E-20 135.8 15.4 159 9-175 21-196 (200)
217 KOG1673 Ras GTPases [General f 99.7 2.5E-16 5.4E-21 133.0 8.0 164 11-177 19-187 (205)
218 cd01896 DRG The developmentall 99.7 1.7E-15 3.7E-20 144.4 14.6 148 14-175 2-225 (233)
219 TIGR00437 feoB ferrous iron tr 99.7 7.3E-16 1.6E-20 165.2 13.4 143 19-175 1-154 (591)
220 PRK05433 GTP-binding protein L 99.7 2.3E-15 4.9E-20 161.4 17.0 161 11-179 6-187 (600)
221 TIGR00484 EF-G translation elo 99.6 2E-15 4.3E-20 165.7 16.7 232 8-249 6-281 (689)
222 cd01876 YihA_EngB The YihA (En 99.6 1.8E-15 3.9E-20 136.3 13.3 156 14-174 1-169 (170)
223 KOG1423 Ras-like GTPase ERA [C 99.6 3.4E-15 7.4E-20 140.4 15.3 164 8-176 68-271 (379)
224 PRK12317 elongation factor 1-a 99.6 1E-15 2.2E-20 159.3 13.2 158 10-168 4-197 (425)
225 KOG0093 GTPase Rab3, small G p 99.6 5.1E-16 1.1E-20 129.9 8.4 88 418-507 16-103 (193)
226 cd04165 GTPBP1_like GTPBP1-lik 99.6 2.5E-15 5.5E-20 142.0 13.8 153 14-173 1-220 (224)
227 COG0370 FeoB Fe2+ transport sy 99.6 4.2E-15 9E-20 155.1 15.8 156 11-180 2-168 (653)
228 PRK10218 GTP-binding protein; 99.6 5.6E-15 1.2E-19 157.7 17.2 164 11-179 4-198 (607)
229 PRK00007 elongation factor G; 99.6 4.5E-15 9.8E-20 162.7 17.0 233 9-249 7-282 (693)
230 PRK10512 selenocysteinyl-tRNA- 99.6 3.8E-15 8.2E-20 160.0 16.0 159 13-175 1-165 (614)
231 TIGR03680 eif2g_arch translati 99.6 2.1E-15 4.6E-20 155.5 13.4 164 10-176 2-196 (406)
232 KOG0097 GTPase Rab14, small G 99.6 6.6E-16 1.4E-20 128.2 7.5 86 420-507 8-93 (215)
233 KOG0091 GTPase Rab39, small G 99.6 2.8E-16 6.2E-21 133.8 5.0 84 422-507 7-91 (213)
234 KOG0076 GTP-binding ADP-ribosy 99.6 9E-16 1.9E-20 132.5 8.0 166 10-178 15-189 (197)
235 cd01858 NGP_1 NGP-1. Autoanti 99.6 1.6E-14 3.4E-19 129.5 16.5 90 77-173 3-92 (157)
236 TIGR01394 TypA_BipA GTP-bindin 99.6 5.5E-15 1.2E-19 158.0 15.1 162 13-179 2-194 (594)
237 cd04167 Snu114p Snu114p subfam 99.6 5.4E-15 1.2E-19 139.4 13.0 157 14-174 2-209 (213)
238 PRK04000 translation initiatio 99.6 8.2E-15 1.8E-19 151.0 15.2 167 8-177 5-202 (411)
239 PRK13351 elongation factor G; 99.6 1.1E-14 2.3E-19 160.4 16.9 232 10-249 6-280 (687)
240 cd01859 MJ1464 MJ1464. This f 99.6 1.6E-14 3.4E-19 129.3 14.8 92 73-174 3-94 (156)
241 KOG0072 GTP-binding ADP-ribosy 99.6 4.1E-15 9E-20 124.1 9.6 160 11-176 17-179 (182)
242 KOG0074 GTP-binding ADP-ribosy 99.6 5.3E-15 1.1E-19 123.1 10.1 161 9-174 14-177 (185)
243 COG2229 Predicted GTPase [Gene 99.6 3.8E-14 8.2E-19 124.5 16.0 159 9-174 7-176 (187)
244 cd04120 Rab12 Rab12 subfamily. 99.6 3.7E-15 8E-20 138.8 10.0 82 424-507 1-82 (202)
245 TIGR00483 EF-1_alpha translati 99.6 4.3E-15 9.4E-20 154.5 11.3 159 9-168 4-199 (426)
246 PRK12739 elongation factor G; 99.6 3.6E-14 7.7E-19 155.8 17.4 230 10-249 6-280 (691)
247 cd04104 p47_IIGP_like p47 (47- 99.6 3.6E-14 7.9E-19 132.0 14.7 159 12-176 1-184 (197)
248 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 9E-15 2E-19 134.1 10.4 83 422-507 4-86 (182)
249 PRK04004 translation initiatio 99.6 3.3E-14 7.1E-19 152.0 16.1 156 11-173 5-215 (586)
250 cd01883 EF1_alpha Eukaryotic e 99.6 5.6E-15 1.2E-19 139.8 9.2 149 14-165 1-194 (219)
251 cd01855 YqeH YqeH. YqeH is an 99.6 3.6E-14 7.8E-19 131.3 14.3 93 72-173 24-122 (190)
252 PF10662 PduV-EutP: Ethanolami 99.6 1.4E-14 3E-19 124.7 10.5 136 14-172 3-142 (143)
253 cd01892 Miro2 Miro2 subfamily. 99.6 1.2E-14 2.5E-19 132.0 10.6 85 421-507 2-87 (169)
254 cd04121 Rab40 Rab40 subfamily. 99.6 1.3E-14 2.8E-19 133.8 11.0 85 421-507 4-88 (189)
255 cd04128 Spg1 Spg1p. Spg1p (se 99.6 1.2E-14 2.5E-19 133.6 10.3 82 424-507 1-82 (182)
256 KOG1489 Predicted GTP-binding 99.6 3E-14 6.5E-19 134.9 13.2 151 13-173 197-364 (366)
257 PRK12736 elongation factor Tu; 99.6 4.2E-14 9.2E-19 145.3 15.4 164 9-176 9-201 (394)
258 cd04131 Rnd Rnd subfamily. Th 99.6 1.5E-14 3.2E-19 132.3 10.0 81 424-507 2-82 (178)
259 PRK12289 GTPase RsgA; Reviewed 99.6 4.3E-14 9.4E-19 141.5 14.2 89 74-171 81-170 (352)
260 cd04133 Rop_like Rop subfamily 99.6 1.4E-14 3.1E-19 132.0 9.8 81 424-507 2-82 (176)
261 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 1.6E-14 3.5E-19 134.9 10.3 82 424-507 1-83 (201)
262 PRK12735 elongation factor Tu; 99.6 4.5E-14 9.8E-19 145.2 14.5 164 8-175 8-202 (396)
263 cd04122 Rab14 Rab14 subfamily. 99.6 2E-14 4.4E-19 129.9 10.5 83 423-507 2-84 (166)
264 cd01867 Rab8_Rab10_Rab13_like 99.6 2E-14 4.3E-19 130.1 10.5 84 422-507 2-85 (167)
265 PRK00741 prfC peptide chain re 99.6 2E-14 4.4E-19 151.7 11.9 132 10-149 8-161 (526)
266 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 2E-14 4.4E-19 136.2 10.5 82 423-507 13-94 (232)
267 COG1084 Predicted GTPase [Gene 99.5 1.1E-13 2.4E-18 132.4 15.1 160 10-177 166-337 (346)
268 cd04108 Rab36_Rab34 Rab34/Rab3 99.5 2.4E-14 5.3E-19 130.0 10.2 81 425-507 2-82 (170)
269 cd01885 EF2 EF2 (for archaea a 99.5 1.3E-13 2.8E-18 129.9 15.4 111 14-128 2-138 (222)
270 cd01875 RhoG RhoG subfamily. 99.5 2.3E-14 4.9E-19 132.7 10.1 82 423-507 3-84 (191)
271 cd01865 Rab3 Rab3 subfamily. 99.5 3E-14 6.6E-19 128.6 10.4 82 424-507 2-83 (165)
272 CHL00071 tufA elongation facto 99.5 1E-13 2.2E-18 143.2 15.1 152 9-164 9-181 (409)
273 KOG4423 GTP-binding protein-li 99.5 6.3E-16 1.4E-20 134.7 -1.2 160 12-179 25-197 (229)
274 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 4.3E-14 9.3E-19 127.6 10.7 83 423-507 2-84 (166)
275 TIGR00485 EF-Tu translation el 99.5 8E-14 1.7E-18 143.4 13.7 150 9-162 9-179 (394)
276 COG2262 HflX GTPases [General 99.5 1.8E-13 3.9E-18 134.9 15.2 155 11-176 191-356 (411)
277 cd04102 RabL3 RabL3 (Rab-like3 99.5 4.6E-14 9.9E-19 131.2 10.2 82 424-507 1-87 (202)
278 cd04119 RJL RJL (RabJ-Like) su 99.5 5E-14 1.1E-18 127.0 10.2 82 424-507 1-82 (168)
279 cd04116 Rab9 Rab9 subfamily. 99.5 6.4E-14 1.4E-18 127.0 10.9 84 422-507 4-87 (170)
280 TIGR00503 prfC peptide chain r 99.5 1.1E-13 2.5E-18 146.0 14.4 117 10-130 9-147 (527)
281 cd01868 Rab11_like Rab11-like. 99.5 6.1E-14 1.3E-18 126.5 10.6 84 422-507 2-85 (165)
282 cd01857 HSR1_MMR1 HSR1/MMR1. 99.5 1.4E-13 3.1E-18 120.8 12.6 54 425-482 85-138 (141)
283 cd04136 Rap_like Rap-like subf 99.5 4.4E-14 9.4E-19 126.9 9.5 81 424-507 2-82 (163)
284 cd01874 Cdc42 Cdc42 subfamily. 99.5 5.6E-14 1.2E-18 128.2 9.9 81 424-507 2-82 (175)
285 cd04124 RabL2 RabL2 subfamily. 99.5 6.7E-14 1.4E-18 125.9 10.0 82 424-507 1-82 (161)
286 cd04110 Rab35 Rab35 subfamily. 99.5 7.4E-14 1.6E-18 130.2 10.7 84 422-507 5-88 (199)
287 cd01866 Rab2 Rab2 subfamily. 99.5 8.2E-14 1.8E-18 126.2 10.7 84 422-507 3-86 (168)
288 PLN03071 GTP-binding nuclear p 99.5 8.2E-14 1.8E-18 131.8 10.9 85 421-507 11-95 (219)
289 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 6.9E-14 1.5E-18 131.9 10.2 81 424-507 2-82 (222)
290 cd04127 Rab27A Rab27a subfamil 99.5 9.5E-14 2.1E-18 127.1 10.9 84 422-507 3-96 (180)
291 PLN00023 GTP-binding protein; 99.5 8.7E-14 1.9E-18 135.7 10.9 87 419-507 17-116 (334)
292 cd01899 Ygr210 Ygr210 subfamil 99.5 7.4E-13 1.6E-17 131.1 17.6 80 15-94 1-111 (318)
293 cd04109 Rab28 Rab28 subfamily. 99.5 8E-14 1.7E-18 131.6 10.3 82 424-507 1-83 (215)
294 cd01864 Rab19 Rab19 subfamily. 99.5 1.1E-13 2.3E-18 125.0 10.6 84 422-507 2-85 (165)
295 PLN03110 Rab GTPase; Provision 99.5 1.1E-13 2.3E-18 130.8 10.9 85 421-507 10-94 (216)
296 cd04117 Rab15 Rab15 subfamily. 99.5 9.3E-14 2E-18 125.0 10.0 82 424-507 1-82 (161)
297 PRK12288 GTPase RsgA; Reviewed 99.5 3.5E-13 7.6E-18 135.0 15.2 86 80-171 118-203 (347)
298 cd04111 Rab39 Rab39 subfamily. 99.5 1.1E-13 2.3E-18 130.3 10.6 83 423-507 2-85 (211)
299 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.5 1.1E-13 2.4E-18 125.9 10.1 82 423-507 2-83 (172)
300 TIGR03596 GTPase_YlqF ribosome 99.5 4.3E-13 9.3E-18 131.3 14.8 89 74-174 13-101 (276)
301 cd04176 Rap2 Rap2 subgroup. T 99.5 1E-13 2.2E-18 124.7 9.6 81 424-507 2-82 (163)
302 COG3596 Predicted GTPase [Gene 99.5 2.3E-13 5.1E-18 127.2 11.8 166 8-176 35-222 (296)
303 cd04138 H_N_K_Ras_like H-Ras/N 99.5 1.2E-13 2.7E-18 123.6 9.8 81 424-507 2-82 (162)
304 cd04106 Rab23_lke Rab23-like s 99.5 1.4E-13 3.1E-18 123.5 10.1 82 424-507 1-84 (162)
305 PF01926 MMR_HSR1: 50S ribosom 99.5 2.2E-13 4.8E-18 115.4 10.8 104 14-124 1-116 (116)
306 PLN03127 Elongation factor Tu; 99.5 3.6E-13 7.7E-18 139.8 14.5 164 8-175 57-251 (447)
307 PRK00049 elongation factor Tu; 99.5 4.4E-13 9.5E-18 137.8 14.9 163 9-175 9-202 (396)
308 cd01856 YlqF YlqF. Proteins o 99.5 5.2E-13 1.1E-17 121.4 13.7 90 73-174 10-99 (171)
309 KOG0088 GTPase Rab21, small G 99.5 1.8E-14 3.9E-19 122.1 3.7 85 421-507 11-95 (218)
310 PTZ00369 Ras-like protein; Pro 99.5 1.5E-13 3.2E-18 127.1 10.0 83 422-507 4-86 (189)
311 cd04125 RabA_like RabA-like su 99.5 1.6E-13 3.5E-18 126.7 10.2 82 424-507 1-82 (188)
312 PRK05124 cysN sulfate adenylyl 99.5 4.6E-13 9.9E-18 140.3 14.7 155 9-167 24-216 (474)
313 PRK09866 hypothetical protein; 99.5 5.3E-12 1.2E-16 131.4 22.2 174 59-245 230-413 (741)
314 cd01871 Rac1_like Rac1-like su 99.5 1.9E-13 4E-18 124.7 10.2 81 424-507 2-82 (174)
315 cd00877 Ran Ran (Ras-related n 99.5 1.7E-13 3.7E-18 123.9 9.8 82 424-507 1-82 (166)
316 cd04118 Rab24 Rab24 subfamily. 99.5 1.8E-13 4E-18 126.8 10.0 82 424-507 1-83 (193)
317 cd04175 Rap1 Rap1 subgroup. T 99.5 1.7E-13 3.6E-18 123.5 9.4 81 424-507 2-82 (164)
318 TIGR02034 CysN sulfate adenyly 99.5 3.8E-13 8.3E-18 138.7 13.3 151 13-167 1-188 (406)
319 cd01861 Rab6 Rab6 subfamily. 99.5 2.3E-13 5E-18 122.0 10.1 82 424-507 1-82 (161)
320 PRK05506 bifunctional sulfate 99.5 2.9E-13 6.3E-18 147.4 12.6 155 8-166 20-211 (632)
321 cd04115 Rab33B_Rab33A Rab33B/R 99.5 2.9E-13 6.3E-18 122.8 10.4 83 423-507 2-85 (170)
322 cd04132 Rho4_like Rho4-like su 99.5 2.6E-13 5.6E-18 125.1 10.1 81 424-507 1-82 (187)
323 cd04113 Rab4 Rab4 subfamily. 99.5 2.6E-13 5.7E-18 121.8 9.9 82 424-507 1-82 (161)
324 cd01860 Rab5_related Rab5-rela 99.5 3E-13 6.6E-18 121.5 10.4 82 424-507 2-83 (163)
325 cd01849 YlqF_related_GTPase Yl 99.5 9.7E-13 2.1E-17 117.5 13.5 82 84-174 1-83 (155)
326 COG0536 Obg Predicted GTPase [ 99.5 7.4E-13 1.6E-17 127.2 13.2 156 14-177 161-334 (369)
327 PLN03126 Elongation factor Tu; 99.5 7.3E-13 1.6E-17 138.2 14.4 152 9-164 78-250 (478)
328 PRK09563 rbgA GTPase YlqF; Rev 99.5 1E-12 2.2E-17 129.3 14.7 89 74-174 16-104 (287)
329 PRK12740 elongation factor G; 99.5 6.9E-13 1.5E-17 145.8 14.5 224 18-249 1-264 (668)
330 cd04144 Ras2 Ras2 subfamily. 99.4 2.1E-13 4.5E-18 126.2 8.7 80 425-507 1-80 (190)
331 COG1163 DRG Predicted GTPase [ 99.4 3.1E-12 6.7E-17 121.9 16.4 150 12-175 63-288 (365)
332 PLN03108 Rab family protein; P 99.4 4.2E-13 9.2E-18 126.2 10.6 84 422-507 5-88 (210)
333 cd04134 Rho3 Rho3 subfamily. 99.4 3.5E-13 7.5E-18 124.6 9.6 80 425-507 2-81 (189)
334 PF09439 SRPRB: Signal recogni 99.4 4.3E-13 9.4E-18 120.8 9.7 119 12-131 3-128 (181)
335 cd04112 Rab26 Rab26 subfamily. 99.4 4.4E-13 9.5E-18 124.1 10.1 82 424-507 1-83 (191)
336 cd01862 Rab7 Rab7 subfamily. 99.4 4.7E-13 1E-17 121.3 10.1 82 424-507 1-82 (172)
337 PRK00098 GTPase RsgA; Reviewed 99.4 1.4E-12 3E-17 128.9 14.1 85 79-170 77-161 (298)
338 PTZ00327 eukaryotic translatio 99.4 1.2E-12 2.7E-17 135.5 14.1 166 10-178 32-235 (460)
339 smart00173 RAS Ras subfamily o 99.4 4.3E-13 9.3E-18 120.7 9.1 81 424-507 1-81 (164)
340 cd04140 ARHI_like ARHI subfami 99.4 5.4E-13 1.2E-17 120.4 9.8 81 424-507 2-82 (165)
341 cd01863 Rab18 Rab18 subfamily. 99.4 7.5E-13 1.6E-17 118.7 10.2 82 424-507 1-82 (161)
342 cd04143 Rhes_like Rhes_like su 99.4 4.8E-13 1E-17 128.5 9.4 81 424-507 1-81 (247)
343 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 3.9E-12 8.4E-17 118.3 15.2 165 13-183 1-191 (196)
344 smart00175 RAB Rab subfamily o 99.4 7.1E-13 1.5E-17 119.1 10.0 82 424-507 1-82 (164)
345 cd04145 M_R_Ras_like M-Ras/R-R 99.4 6.9E-13 1.5E-17 119.2 9.9 82 423-507 2-83 (164)
346 PF00071 Ras: Ras family; Int 99.4 7.7E-13 1.7E-17 118.8 10.1 81 425-507 1-81 (162)
347 cd04130 Wrch_1 Wrch-1 subfamil 99.4 7.1E-13 1.5E-17 120.6 9.6 81 424-507 1-81 (173)
348 cd04142 RRP22 RRP22 subfamily. 99.4 5.6E-13 1.2E-17 124.0 9.0 84 424-507 1-90 (198)
349 PLN03118 Rab family protein; P 99.4 1E-12 2.3E-17 123.6 10.6 83 422-507 13-95 (211)
350 cd04101 RabL4 RabL4 (Rab-like4 99.4 1E-12 2.2E-17 118.2 10.1 82 424-507 1-85 (164)
351 KOG0462 Elongation factor-type 99.4 2.6E-12 5.6E-17 129.7 13.6 163 11-181 59-240 (650)
352 cd01854 YjeQ_engC YjeQ/EngC. 99.4 3.6E-12 7.8E-17 125.3 14.5 83 79-170 75-158 (287)
353 TIGR03597 GTPase_YqeH ribosome 99.4 4.6E-12 1E-16 128.4 15.1 97 70-172 51-149 (360)
354 smart00176 RAN Ran (Ras-relate 99.4 8.9E-13 1.9E-17 122.6 9.1 77 429-507 1-77 (200)
355 KOG0083 GTPase Rab26/Rab37, sm 99.4 6.4E-14 1.4E-18 115.4 1.1 78 428-507 2-80 (192)
356 cd04177 RSR1 RSR1 subgroup. R 99.4 1.2E-12 2.7E-17 118.4 9.6 81 424-507 2-82 (168)
357 COG0532 InfB Translation initi 99.4 1.7E-12 3.8E-17 132.0 11.3 156 11-174 4-168 (509)
358 PRK09602 translation-associate 99.4 2E-11 4.3E-16 124.6 18.7 81 13-93 2-113 (396)
359 PLN00043 elongation factor 1-a 99.4 2.3E-12 4.9E-17 133.9 11.9 154 9-166 4-203 (447)
360 PTZ00141 elongation factor 1- 99.4 4E-12 8.8E-17 132.2 13.6 154 9-166 4-203 (446)
361 smart00174 RHO Rho (Ras homolo 99.4 1.4E-12 3E-17 118.7 8.9 79 426-507 1-79 (174)
362 cd04149 Arf6 Arf6 subfamily. 99.4 2.1E-12 4.7E-17 116.9 9.7 79 422-507 8-86 (168)
363 cd04150 Arf1_5_like Arf1-Arf5- 99.4 2.2E-12 4.8E-17 115.8 9.6 77 424-507 1-77 (159)
364 cd01870 RhoA_like RhoA-like su 99.4 2.7E-12 6E-17 116.8 9.8 81 424-507 2-82 (175)
365 PTZ00132 GTP-binding nuclear p 99.4 3.4E-12 7.3E-17 120.5 10.7 86 420-507 6-91 (215)
366 cd04123 Rab21 Rab21 subfamily. 99.4 3.3E-12 7.2E-17 114.3 10.1 82 424-507 1-82 (162)
367 COG1100 GTPase SAR1 and relate 99.4 2.7E-12 5.9E-17 121.4 9.9 83 423-507 5-87 (219)
368 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 3.3E-12 7.2E-17 117.4 10.2 82 423-507 3-85 (183)
369 cd04126 Rab20 Rab20 subfamily. 99.4 2.6E-12 5.6E-17 121.1 9.5 77 424-507 1-77 (220)
370 KOG0077 Vesicle coat complex C 99.4 4.6E-12 1E-16 108.8 9.9 160 10-173 18-190 (193)
371 KOG1145 Mitochondrial translat 99.3 1.6E-11 3.4E-16 124.0 14.8 155 10-175 151-315 (683)
372 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 2.3E-12 5E-17 116.2 8.0 77 425-507 1-77 (164)
373 cd04135 Tc10 TC10 subfamily. 99.3 3.8E-12 8.3E-17 115.7 9.3 81 424-507 1-81 (174)
374 cd04114 Rab30 Rab30 subfamily. 99.3 7.2E-12 1.6E-16 113.3 10.7 84 422-507 6-89 (169)
375 cd00154 Rab Rab family. Rab G 99.3 5.4E-12 1.2E-16 112.1 9.7 82 424-507 1-82 (159)
376 PTZ00133 ADP-ribosylation fact 99.3 5.3E-12 1.1E-16 116.0 9.8 79 422-507 16-94 (182)
377 PLN00223 ADP-ribosylation fact 99.3 6.2E-12 1.4E-16 115.3 9.8 79 422-507 16-94 (181)
378 smart00177 ARF ARF-like small 99.3 6.5E-12 1.4E-16 114.6 9.8 79 422-507 12-90 (175)
379 COG0481 LepA Membrane GTPase L 99.3 1.1E-11 2.3E-16 123.3 11.5 163 10-180 7-190 (603)
380 COG0486 ThdF Predicted GTPase 99.3 3.1E-12 6.6E-17 128.6 7.8 89 418-507 212-306 (454)
381 KOG1490 GTP-binding protein CR 99.3 1.8E-11 3.9E-16 122.4 12.3 163 10-176 166-341 (620)
382 cd04103 Centaurin_gamma Centau 99.3 1E-11 2.3E-16 111.2 9.4 75 424-507 1-75 (158)
383 KOG1191 Mitochondrial GTPase [ 99.3 3.3E-12 7.2E-17 127.8 6.7 86 421-507 266-358 (531)
384 cd04148 RGK RGK subfamily. Th 99.3 9.6E-12 2.1E-16 117.9 9.6 80 424-507 1-82 (221)
385 cd04146 RERG_RasL11_like RERG/ 99.3 6.4E-12 1.4E-16 113.3 8.0 80 425-507 1-81 (165)
386 cd01850 CDC_Septin CDC/Septin. 99.3 9E-12 1.9E-16 121.6 9.5 140 12-158 4-184 (276)
387 cd00157 Rho Rho (Ras homology) 99.3 1.2E-11 2.5E-16 112.0 9.5 81 424-507 1-81 (171)
388 cd04147 Ras_dva Ras-dva subfam 99.3 9.1E-12 2E-16 116.0 8.9 80 425-507 1-80 (198)
389 PRK13796 GTPase YqeH; Provisio 99.3 5.7E-11 1.2E-15 120.6 15.3 89 78-172 64-155 (365)
390 cd04154 Arl2 Arl2 subfamily. 99.3 1.5E-11 3.3E-16 111.9 9.7 80 421-507 12-91 (173)
391 COG0480 FusA Translation elong 99.3 7.7E-11 1.7E-15 127.0 16.2 232 9-250 7-281 (697)
392 PF08477 Miro: Miro-like prote 99.3 1.7E-11 3.7E-16 104.1 9.1 81 425-507 1-83 (119)
393 cd04178 Nucleostemin_like Nucl 99.3 8E-11 1.7E-15 106.5 13.8 56 423-482 117-172 (172)
394 cd01873 RhoBTB RhoBTB subfamil 99.3 1.7E-11 3.8E-16 113.6 9.5 80 424-507 3-97 (195)
395 KOG0081 GTPase Rab27, small G 99.3 3.6E-13 7.7E-18 114.4 -1.7 85 421-507 7-100 (219)
396 cd01893 Miro1 Miro1 subfamily. 99.3 2E-11 4.4E-16 110.2 9.7 80 424-507 1-80 (166)
397 cd01882 BMS1 Bms1. Bms1 is an 99.3 1.1E-10 2.5E-15 110.6 15.1 144 9-164 36-184 (225)
398 cd04139 RalA_RalB RalA/RalB su 99.3 2E-11 4.3E-16 109.6 9.4 81 424-507 1-81 (164)
399 cd04157 Arl6 Arl6 subfamily. 99.3 1.9E-11 4.2E-16 109.5 8.9 77 425-507 1-78 (162)
400 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 4.6E-11 1E-15 112.5 11.4 163 14-177 1-177 (232)
401 COG4917 EutP Ethanolamine util 99.2 1.8E-11 3.9E-16 100.3 7.3 135 14-173 3-143 (148)
402 KOG0090 Signal recognition par 99.2 5.3E-11 1.2E-15 106.9 10.6 158 13-174 39-237 (238)
403 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.2 3.7E-11 7.9E-16 109.5 9.6 78 423-507 15-92 (174)
404 cd04158 ARD1 ARD1 subfamily. 99.2 3.2E-11 6.9E-16 109.3 9.1 76 425-507 1-76 (169)
405 cd04161 Arl2l1_Arl13_like Arl2 99.2 3.4E-11 7.4E-16 108.9 9.3 76 425-507 1-76 (167)
406 COG1159 Era GTPase [General fu 99.2 1.7E-11 3.8E-16 116.5 7.5 84 423-507 6-95 (298)
407 cd00876 Ras Ras family. The R 99.2 3.9E-11 8.4E-16 107.1 9.0 80 425-507 1-80 (160)
408 cd04171 SelB SelB subfamily. 99.2 3.8E-11 8.3E-16 107.7 8.5 80 425-507 2-84 (164)
409 cd04137 RheB Rheb (Ras Homolog 99.2 5.2E-11 1.1E-15 109.0 9.4 81 424-507 2-82 (180)
410 cd04156 ARLTS1 ARLTS1 subfamil 99.2 4.8E-11 1E-15 106.8 9.0 77 425-507 1-77 (160)
411 KOG4252 GTP-binding protein [S 99.2 2E-12 4.4E-17 112.1 -0.4 84 421-506 18-101 (246)
412 cd04151 Arl1 Arl1 subfamily. 99.2 4.2E-11 9.1E-16 107.2 7.9 76 425-507 1-76 (158)
413 KOG0393 Ras-related small GTPa 99.2 1.8E-11 3.9E-16 110.8 4.9 83 422-507 3-86 (198)
414 PRK13768 GTPase; Provisional 99.2 2.9E-10 6.3E-15 109.7 13.4 118 59-176 97-247 (253)
415 cd04159 Arl10_like Arl10-like 99.2 9.9E-11 2.1E-15 104.0 9.4 76 426-507 2-77 (159)
416 TIGR00490 aEF-2 translation el 99.2 1.6E-10 3.5E-15 127.5 12.5 117 10-130 17-153 (720)
417 cd01891 TypA_BipA TypA (tyrosi 99.2 5.1E-11 1.1E-15 110.6 7.3 81 425-507 4-98 (194)
418 KOG0395 Ras-related GTPase [Ge 99.2 5.3E-11 1.1E-15 110.0 7.0 82 423-507 3-84 (196)
419 PRK14845 translation initiatio 99.2 3.1E-10 6.7E-15 126.9 14.2 147 23-173 472-670 (1049)
420 cd00878 Arf_Arl Arf (ADP-ribos 99.2 1.3E-10 2.7E-15 103.9 9.1 76 425-507 1-76 (158)
421 TIGR00991 3a0901s02IAP34 GTP-b 99.2 4.2E-10 9E-15 109.5 13.3 120 9-130 35-168 (313)
422 smart00178 SAR Sar1p-like memb 99.1 1.7E-10 3.6E-15 106.2 9.8 78 423-507 17-94 (184)
423 TIGR00436 era GTP-binding prot 99.1 9.8E-11 2.1E-15 114.4 8.5 82 425-507 2-89 (270)
424 COG5256 TEF1 Translation elong 99.1 2.5E-10 5.4E-15 112.8 11.1 157 9-167 4-202 (428)
425 PRK15494 era GTPase Era; Provi 99.1 1.5E-10 3.3E-15 116.4 9.2 85 421-507 50-141 (339)
426 cd04160 Arfrp1 Arfrp1 subfamil 99.1 1.9E-10 4.2E-15 103.7 9.0 77 425-507 1-83 (167)
427 cd04129 Rho2 Rho2 subfamily. 99.1 2.5E-10 5.4E-15 105.3 9.8 81 424-507 2-82 (187)
428 PRK09435 membrane ATPase/prote 99.1 7.5E-10 1.6E-14 109.9 13.4 106 57-176 147-260 (332)
429 cd01890 LepA LepA subfamily. 99.1 1.6E-10 3.5E-15 105.5 8.2 81 425-507 2-100 (179)
430 KOG0461 Selenocysteine-specifi 99.1 1E-09 2.2E-14 105.1 13.6 165 10-181 5-198 (522)
431 KOG0073 GTP-binding ADP-ribosy 99.1 2.6E-10 5.7E-15 98.0 8.3 79 422-507 15-93 (185)
432 TIGR00450 mnmE_trmE_thdF tRNA 99.1 1.9E-10 4.1E-15 119.4 9.1 84 422-507 202-292 (442)
433 TIGR03156 GTP_HflX GTP-binding 99.1 1.8E-10 3.9E-15 116.2 8.5 82 422-507 188-278 (351)
434 PTZ00258 GTP-binding protein; 99.1 1E-09 2.2E-14 110.9 13.6 84 9-93 18-126 (390)
435 cd01853 Toc34_like Toc34-like 99.1 9.5E-10 2E-14 105.5 12.4 119 9-130 28-164 (249)
436 cd00879 Sar1 Sar1 subfamily. 99.1 4.6E-10 1E-14 103.6 9.8 78 423-507 19-96 (190)
437 COG1217 TypA Predicted membran 99.1 1.6E-09 3.5E-14 107.8 13.7 164 11-179 4-198 (603)
438 TIGR02528 EutP ethanolamine ut 99.1 1.6E-10 3.4E-15 101.4 6.1 66 425-507 2-72 (142)
439 PRK07560 elongation factor EF- 99.1 1.1E-09 2.5E-14 121.1 14.2 116 10-129 18-153 (731)
440 cd01887 IF2_eIF5B IF2/eIF5B (i 99.1 3.6E-10 7.8E-15 101.9 8.5 81 425-507 2-83 (168)
441 TIGR00101 ureG urease accessor 99.1 1.6E-09 3.6E-14 100.5 13.0 106 58-176 91-196 (199)
442 TIGR00231 small_GTP small GTP- 99.1 5.7E-10 1.2E-14 98.7 9.4 82 424-507 2-83 (161)
443 KOG1424 Predicted GTP-binding 99.1 7.6E-10 1.7E-14 111.6 10.9 56 423-482 314-369 (562)
444 TIGR02836 spore_IV_A stage IV 99.1 2.8E-09 6E-14 106.0 14.1 156 11-174 16-235 (492)
445 KOG1423 Ras-like GTPase ERA [C 99.0 7.7E-10 1.7E-14 104.7 9.4 89 418-507 67-165 (379)
446 smart00010 small_GTPase Small 99.0 4E-10 8.6E-15 96.1 6.9 113 13-165 1-115 (124)
447 PLN00116 translation elongatio 99.0 9.5E-10 2.1E-14 123.2 11.8 116 9-128 16-163 (843)
448 COG4108 PrfC Peptide chain rel 99.0 4.6E-10 9.9E-15 110.9 7.9 228 9-248 9-277 (528)
449 cd01878 HflX HflX subfamily. 99.0 4.2E-10 9.1E-15 105.2 7.4 87 420-507 38-130 (204)
450 cd04155 Arl3 Arl3 subfamily. 99.0 1.1E-09 2.4E-14 99.3 9.9 79 422-507 13-91 (173)
451 PRK05291 trmE tRNA modificatio 99.0 4.5E-10 9.7E-15 117.3 8.0 84 422-507 214-304 (449)
452 PF04548 AIG1: AIG1 family; I 99.0 1.5E-09 3.2E-14 102.2 10.6 164 13-181 1-191 (212)
453 PF00025 Arf: ADP-ribosylation 99.0 9.8E-10 2.1E-14 100.2 9.1 80 421-507 12-91 (175)
454 COG1161 Predicted GTPases [Gen 99.0 3.3E-09 7.2E-14 105.7 13.4 94 65-171 16-112 (322)
455 PTZ00416 elongation factor 2; 99.0 1.1E-09 2.4E-14 122.4 11.1 115 10-128 17-157 (836)
456 KOG1532 GTPase XAB1, interacts 99.0 6.6E-09 1.4E-13 96.9 13.1 166 9-176 16-264 (366)
457 KOG0465 Mitochondrial elongati 99.0 1.8E-09 3.8E-14 110.7 10.0 232 11-250 38-311 (721)
458 cd04105 SR_beta Signal recogni 99.0 1.6E-09 3.5E-14 101.2 9.1 80 425-507 2-82 (203)
459 PF03029 ATP_bind_1: Conserved 99.0 9.8E-10 2.1E-14 104.7 7.8 114 60-175 92-236 (238)
460 PF05049 IIGP: Interferon-indu 99.0 2.9E-09 6.3E-14 106.4 10.7 159 11-176 34-218 (376)
461 PF02421 FeoB_N: Ferrous iron 99.0 1.4E-09 3.1E-14 95.9 7.4 82 424-507 1-88 (156)
462 COG1162 Predicted GTPases [Gen 99.0 9.3E-09 2E-13 99.0 13.1 91 75-171 72-162 (301)
463 PF01926 MMR_HSR1: 50S ribosom 98.9 3.1E-09 6.7E-14 89.9 8.6 81 425-507 1-89 (116)
464 TIGR00750 lao LAO/AO transport 98.9 1.4E-08 3E-13 100.7 14.4 108 57-175 125-237 (300)
465 cd01898 Obg Obg subfamily. Th 98.9 2.1E-09 4.5E-14 97.2 7.7 82 425-507 2-88 (170)
466 COG2895 CysN GTPases - Sulfate 98.9 5.6E-09 1.2E-13 100.8 10.8 154 10-166 4-193 (431)
467 PRK00089 era GTPase Era; Revie 98.9 2.6E-09 5.6E-14 105.8 8.8 84 423-507 5-94 (292)
468 PRK04213 GTP-binding protein; 98.9 3.1E-09 6.6E-14 99.1 8.2 78 422-507 8-100 (201)
469 TIGR03598 GTPase_YsxC ribosome 98.9 4.6E-09 9.9E-14 96.1 9.0 83 420-507 15-110 (179)
470 TIGR00073 hypB hydrogenase acc 98.9 1E-08 2.2E-13 96.2 11.3 150 12-174 22-205 (207)
471 smart00053 DYNc Dynamin, GTPas 98.9 1.3E-08 2.7E-13 96.7 12.0 69 59-130 125-207 (240)
472 cd01879 FeoB Ferrous iron tran 98.9 3.2E-09 7E-14 94.5 7.6 76 428-507 1-84 (158)
473 PRK11058 GTPase HflX; Provisio 98.9 3E-09 6.5E-14 109.8 8.1 83 424-507 198-286 (426)
474 KOG1673 Ras GTPases [General f 98.9 1.5E-09 3.3E-14 92.2 4.5 84 422-507 19-102 (205)
475 PRK09601 GTP-binding protein Y 98.9 3.2E-08 7E-13 98.9 14.7 81 13-93 3-107 (364)
476 cd01895 EngA2 EngA2 subfamily. 98.9 4.9E-09 1.1E-13 94.6 8.1 83 423-507 2-94 (174)
477 PF00350 Dynamin_N: Dynamin fa 98.9 1E-08 2.2E-13 92.7 9.8 64 59-125 101-168 (168)
478 KOG0410 Predicted GTP binding 98.9 1.5E-08 3.3E-13 96.7 11.0 153 9-177 175-342 (410)
479 KOG0096 GTPase Ran/TC4/GSP1 (n 98.9 5.1E-09 1.1E-13 92.3 7.0 84 422-507 9-92 (216)
480 cd01897 NOG NOG1 is a nucleola 98.9 9.7E-09 2.1E-13 92.6 9.1 81 425-507 2-89 (168)
481 cd04163 Era Era subfamily. Er 98.9 1.1E-08 2.3E-13 91.5 9.2 84 423-507 3-92 (168)
482 cd04164 trmE TrmE (MnmE, ThdF, 98.9 8.8E-09 1.9E-13 91.4 8.6 82 424-507 2-90 (157)
483 KOG0070 GTP-binding ADP-ribosy 98.9 3.2E-09 7E-14 93.8 5.5 79 422-507 16-94 (181)
484 COG5126 FRQ1 Ca2+-binding prot 98.9 1.7E-08 3.6E-13 88.5 9.8 143 188-378 12-156 (160)
485 cd00881 GTP_translation_factor 98.8 6.4E-09 1.4E-13 95.5 7.7 79 425-507 1-95 (189)
486 KOG0037 Ca2+-binding protein, 98.8 1.8E-09 4E-14 97.3 3.7 90 309-398 45-157 (221)
487 PRK00454 engB GTP-binding prot 98.8 1.1E-08 2.5E-13 94.7 9.0 82 421-507 22-116 (196)
488 KOG1707 Predicted Ras related/ 98.8 5.3E-08 1.2E-12 99.9 14.4 165 8-180 421-587 (625)
489 cd01889 SelB_euk SelB subfamil 98.8 6.3E-09 1.4E-13 96.3 6.8 82 424-507 1-101 (192)
490 KOG1144 Translation initiation 98.8 4.1E-08 9E-13 102.5 13.1 158 10-174 473-685 (1064)
491 PRK01889 GTPase RsgA; Reviewed 98.8 5.4E-08 1.2E-12 98.5 13.6 83 80-171 110-192 (356)
492 KOG0464 Elongation factor G [T 98.8 1.6E-08 3.4E-13 99.1 8.7 233 9-249 34-320 (753)
493 cd01894 EngA1 EngA1 subfamily. 98.8 8.4E-09 1.8E-13 91.6 6.5 79 427-507 1-86 (157)
494 KOG1486 GTP-binding protein DR 98.8 4E-08 8.7E-13 90.5 10.4 151 12-175 62-287 (364)
495 cd04166 CysN_ATPS CysN_ATPS su 98.8 8.5E-09 1.8E-13 96.8 6.3 80 425-507 1-110 (208)
496 KOG2486 Predicted GTPase [Gene 98.8 1.1E-08 2.3E-13 96.0 6.8 160 10-173 134-313 (320)
497 cd00882 Ras_like_GTPase Ras-li 98.8 2.1E-08 4.5E-13 87.5 8.0 77 428-507 1-78 (157)
498 TIGR00487 IF-2 translation ini 98.8 3.8E-08 8.3E-13 105.5 11.1 83 422-507 86-168 (587)
499 KOG0074 GTP-binding ADP-ribosy 98.8 2.9E-08 6.3E-13 83.2 7.9 81 421-507 15-95 (185)
500 KOG0075 GTP-binding ADP-ribosy 98.8 5.2E-09 1.1E-13 88.3 3.2 79 423-507 20-98 (186)
No 1
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=100.00 E-value=6.2e-92 Score=702.96 Aligned_cols=499 Identities=54% Similarity=0.886 Sum_probs=466.2
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccC
Q 010548 4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83 (507)
Q Consensus 4 m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 83 (507)
|+....++.+||+++|+.||||||||-+|+...|+.++|+..+.++++.++.+..+...|+||+..++........++.|
T Consensus 1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA 80 (625)
T KOG1707|consen 1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKA 80 (625)
T ss_pred CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhc
Confidence 34455778899999999999999999999999999999999999999999999999999999998777777778999999
Q ss_pred CEEEEEEeCCChhhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (507)
Q Consensus 84 d~il~V~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (507)
|++++||+++++.|.+.+..+|++.+++.. .++|||+||||+|+...... +.+..+..++.+|.++..+++|||++
T Consensus 81 ~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~-s~e~~~~pim~~f~EiEtciecSA~~ 159 (625)
T KOG1707|consen 81 DVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN-SDEVNTLPIMIAFAEIETCIECSALT 159 (625)
T ss_pred CEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc-chhHHHHHHHHHhHHHHHHHhhhhhh
Confidence 999999999999999999999999999987 68999999999999876555 44556899999999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCCCCCCccchhcccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHH
Q 010548 161 MIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKR 240 (507)
Q Consensus 161 g~gi~~l~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~ 240 (507)
-.++.++|....+++++|..|+|+...+.+.++|.++|.|+|.+||.|.|+.|+++|++.+|++||+.++++.+++.++.
T Consensus 160 ~~n~~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~ 239 (625)
T KOG1707|consen 160 LANVSELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKN 239 (625)
T ss_pred hhhhHhhhhhhhheeeccCccccccccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHH
Q 010548 241 VVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRG 320 (507)
Q Consensus 241 ~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~ 320 (507)
++.+.+|+|+...++|+.|||+|+++|+++||+||+|++||+|||+|+|+|..+|+|..+.++|+|++|||+.|++||..
T Consensus 240 vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~ 319 (625)
T KOG1707|consen 240 VVQEICPDGVYERGLTLPGFLFLNTLFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVD 319 (625)
T ss_pred HHHhhcCchhhhccccccchHHHHHHHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999548999999999999999999999
Q ss_pred hhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCccccccccCCCCccchHhHHhhhhhhhhcCHHHHHHHHHhhCCCCC-
Q 010548 321 IFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGD- 399 (507)
Q Consensus 321 ~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~d~~~~l~~l~~lg~~~~- 399 (507)
+|++||+|+||+|+++|++++|+++|+.||....+....+.+..|++|++||+|+|.++|++|+..+++||.|+||+..
T Consensus 320 ~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~WsL~Tlld~~~t~~~L~Ylgf~~~~ 399 (625)
T KOG1707|consen 320 VFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQWSLMTLLDPRRTLEYLAYLGFPTDA 399 (625)
T ss_pred HHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHHHHHHhhccHHHHHHHHHhcCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred --ccccceeccccchhhhhccccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEE
Q 010548 400 --PAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477 (507)
Q Consensus 400 --~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 477 (507)
+.+++.++|+|+.+++++++.+++++|.++|+.++|||.+++.|+++.+...+..+...++.++.+... +..+++++
T Consensus 400 ~~~~~ai~vtRkr~~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~-g~~k~LiL 478 (625)
T KOG1707|consen 400 GSQASAIRVTRKRKLDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK-GQQKYLIL 478 (625)
T ss_pred cccccceehhhhhhhhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec-cccceEEE
Confidence 899999999999999889999999999999999999999999999999988666788888999999988 66667776
Q ss_pred ecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548 478 QEIPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 478 Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
-.+|......+.+ .+ ..||+++++||.
T Consensus 479 ~ei~~~~~~~l~~-ke--~~cDv~~~~YDs 505 (625)
T KOG1707|consen 479 REIGEDDQDFLTS-KE--AACDVACLVYDS 505 (625)
T ss_pred eecCccccccccC-cc--ceeeeEEEeccc
Confidence 6666543333332 23 789999999994
No 2
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=4.7e-37 Score=304.55 Aligned_cols=149 Identities=19% Similarity=0.088 Sum_probs=120.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCccch---------hhhHHhh
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLENK---------GKLNEEL 80 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~ 80 (507)
..|+|||+||||||||||||++.+ .+++...+++|. .....+.+..|.++||+|.+... .+...++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r--~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRR--IAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCe--eeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 579999999999999999999999 778888888884 34444678889999999987433 1334688
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (507)
Q Consensus 81 ~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (507)
.+||++|||+|...+.+..+.. +.+.+++. ++|+|+|+||+|.... .....+.+...++ .++++||.|
T Consensus 82 ~eADvilfvVD~~~Git~~D~~--ia~~Lr~~--~kpviLvvNK~D~~~~-----e~~~~efyslG~g---~~~~ISA~H 149 (444)
T COG1160 82 EEADVILFVVDGREGITPADEE--IAKILRRS--KKPVILVVNKIDNLKA-----EELAYEFYSLGFG---EPVPISAEH 149 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHH--HHHHHHhc--CCCEEEEEEcccCchh-----hhhHHHHHhcCCC---CceEeehhh
Confidence 9999999999999887776644 88888855 7999999999997632 3345566667776 479999999
Q ss_pred CCCchHHHHHHHHHH
Q 010548 161 MIQVPDVFYYAQKAV 175 (507)
Q Consensus 161 g~gi~~l~~~i~~~i 175 (507)
|.|+.+|++.+.+.+
T Consensus 150 g~Gi~dLld~v~~~l 164 (444)
T COG1160 150 GRGIGDLLDAVLELL 164 (444)
T ss_pred ccCHHHHHHHHHhhc
Confidence 999999999987754
No 3
>PRK03003 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=2.1e-32 Score=287.10 Aligned_cols=151 Identities=21% Similarity=0.117 Sum_probs=109.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCcc--------chhhhHHh
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEE 79 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~ 79 (507)
...+|+|+|++|||||||+|+|++..+. .....+++| ....+...+..+.+|||||++. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~--~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREA--VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcc--cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 3479999999999999999999987642 222233333 2223334567899999999763 22334567
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
++.||++|+|||++++.++... .|...+++. ++|+++|+||+|+..... +....+...++ .+++|||+
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~~--~i~~~l~~~--~~piilV~NK~Dl~~~~~-----~~~~~~~~g~~---~~~~iSA~ 182 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATDE--AVARVLRRS--GKPVILAANKVDDERGEA-----DAAALWSLGLG---EPHPVSAL 182 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCccch-----hhHHHHhcCCC---CeEEEEcC
Confidence 8999999999999998776543 377777765 799999999999864311 12223333443 35799999
Q ss_pred cCCCchHHHHHHHHHH
Q 010548 160 TMIQVPDVFYYAQKAV 175 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i 175 (507)
+|.|++++++.|.+.+
T Consensus 183 ~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 183 HGRGVGDLLDAVLAAL 198 (472)
T ss_pred CCCCcHHHHHHHHhhc
Confidence 9999999999987653
No 4
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.97 E-value=1.1e-30 Score=272.56 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=106.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCcc--------chhhhHHhhcc
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLE--------NKGKLNEELKR 82 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~ 82 (507)
+|+|+|++|||||||+|+|++... ......+++|. ...+.+.+..+.+|||||... +......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~--~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD--AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc--ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998773 22223333332 223345677899999999742 33345568899
Q ss_pred CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (507)
Q Consensus 83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 162 (507)
+|++++|+|++++.+..+.. +...+++. ++|+++|+||+|+...... ... ...++. .+++++||++|.
T Consensus 79 ad~vl~vvD~~~~~~~~d~~--i~~~l~~~--~~piilVvNK~D~~~~~~~-----~~~--~~~lg~-~~~~~vSa~~g~ 146 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEE--IAKWLRKS--GKPVILVANKIDGKKEDAV-----AAE--FYSLGF-GEPIPISAEHGR 146 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHH--HHHHHHHh--CCCEEEEEECccCCccccc-----HHH--HHhcCC-CCeEEEeCCcCC
Confidence 99999999999876655533 66677766 7999999999998754322 111 123332 268999999999
Q ss_pred CchHHHHHHHHH
Q 010548 163 QVPDVFYYAQKA 174 (507)
Q Consensus 163 gi~~l~~~i~~~ 174 (507)
|+.++++.+.+.
T Consensus 147 gv~~ll~~i~~~ 158 (429)
T TIGR03594 147 GIGDLLDAILEL 158 (429)
T ss_pred ChHHHHHHHHHh
Confidence 999999987654
No 5
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.97 E-value=1.2e-29 Score=265.18 Aligned_cols=147 Identities=15% Similarity=0.066 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCcc--------chhhhHHhhc
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLE--------NKGKLNEELK 81 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~ 81 (507)
.+|+|+|++|||||||+|+|++... ......+++|. .......+..+.+|||||+.. .......+++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~--~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD--AIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc--eeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999998773 22222233331 122334568899999999876 2223446789
Q ss_pred cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (507)
Q Consensus 82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 161 (507)
.+|++|+|+|++++.+..+.. +...+++. ++|+++|+||+|+..... ..... ..++. ..++++||++|
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~--~~~~l~~~--~~piilv~NK~D~~~~~~-----~~~~~--~~lg~-~~~~~iSa~~g 147 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEE--IAKILRKS--NKPVILVVNKVDGPDEEA-----DAYEF--YSLGL-GEPYPISAEHG 147 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCcEEEEEECccCccchh-----hHHHH--HhcCC-CCCEEEEeeCC
Confidence 999999999999875554432 45556665 799999999999754211 11111 22332 24799999999
Q ss_pred CCchHHHHHHHH
Q 010548 162 IQVPDVFYYAQK 173 (507)
Q Consensus 162 ~gi~~l~~~i~~ 173 (507)
.|++++++.+.+
T Consensus 148 ~gv~~l~~~I~~ 159 (435)
T PRK00093 148 RGIGDLLDAILE 159 (435)
T ss_pred CCHHHHHHHHHh
Confidence 999999998865
No 6
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.97 E-value=1.3e-29 Score=277.86 Aligned_cols=150 Identities=19% Similarity=0.098 Sum_probs=108.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCcc--------chhhhHHhh
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEEL 80 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~ 80 (507)
..+|+|+|++|||||||+|+|++... ......+++| ......+.+..+.+|||||... +......++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~--~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRRE--AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 46899999999999999999998763 3333344454 2223334567899999999763 223344678
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (507)
Q Consensus 81 ~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (507)
+.+|++|+|+|++++.+..+ ..|...++.. ++|+|+|+||+|+.... ......+...++ ..++|||++
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d--~~i~~~Lr~~--~~pvIlV~NK~D~~~~~-----~~~~~~~~lg~~---~~~~iSA~~ 420 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTD--ERIVRMLRRA--GKPVVLAVNKIDDQASE-----YDAAEFWKLGLG---EPYPISAMH 420 (712)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHhc--CCCEEEEEECcccccch-----hhHHHHHHcCCC---CeEEEECCC
Confidence 99999999999987644333 3477778765 89999999999986431 122223333333 468999999
Q ss_pred CCCchHHHHHHHHHH
Q 010548 161 MIQVPDVFYYAQKAV 175 (507)
Q Consensus 161 g~gi~~l~~~i~~~i 175 (507)
|.||++++++|.+.+
T Consensus 421 g~GI~eLl~~i~~~l 435 (712)
T PRK09518 421 GRGVGDLLDEALDSL 435 (712)
T ss_pred CCCchHHHHHHHHhc
Confidence 999999999987653
No 7
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.8e-29 Score=222.14 Aligned_cols=168 Identities=18% Similarity=0.287 Sum_probs=145.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (507)
.....+||+|+|++|||||+|+.||..+.|.+.+.+++.- ++ ....++.+.++++||||+|+++|+.....||++|++
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 3556799999999999999999999999998886654432 22 555667788999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548 86 VVLTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (507)
Q Consensus 86 il~V~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 164 (507)
||+|||+++.+||..+.. |+.+++++.. ++|.++||||||+.+.+.+ ..++...++..++.. .++|+|||++.||
T Consensus 85 ii~vyDiT~~~SF~~v~~-Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v--~~~~a~~fa~~~~~~-~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKR-WIQEIDRYASENVPKLLVGNKCDLTEKRVV--STEEAQEFADELGIP-IFLETSAKDSTNV 160 (205)
T ss_pred EEEEEEcccHHHhhhHHH-HHHHhhhhccCCCCeEEEeeccccHhheec--CHHHHHHHHHhcCCc-ceeecccCCccCH
Confidence 999999999999999997 9999999864 6799999999999998887 455678888888763 3999999999999
Q ss_pred hHHHHHHHHHHcCCC
Q 010548 165 PDVFYYAQKAVLHPT 179 (507)
Q Consensus 165 ~~l~~~i~~~i~~~~ 179 (507)
++.|..|...+....
T Consensus 161 e~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 161 EDAFLTLAKELKQRK 175 (205)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999988775443
No 8
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.3e-29 Score=220.53 Aligned_cols=165 Identities=21% Similarity=0.271 Sum_probs=142.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP--TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
...+||+++|+.+||||||+-|+..+.|.+...+++.. .|....++...+++.||||+|+++|.++.+.|+++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35689999999999999999999999998875554432 3355566667899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
+|||+++.+||..++. |..++++.. +++-+.|||||+||...+.+ ..++...++...+. .|+|+|||+|.||++
T Consensus 83 vvYDit~~~SF~~aK~-WvkeL~~~~~~~~vialvGNK~DL~~~R~V--~~~ea~~yAe~~gl--l~~ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKN-WVKELQRQASPNIVIALVGNKADLLERREV--EFEEAQAYAESQGL--LFFETSAKTGENVNE 157 (200)
T ss_pred EEEecccHHHHHHHHH-HHHHHHhhCCCCeEEEEecchhhhhhcccc--cHHHHHHHHHhcCC--EEEEEecccccCHHH
Confidence 9999999999999997 999999875 35667789999999998877 45667888888876 699999999999999
Q ss_pred HHHHHHHHHcCCC
Q 010548 167 VFYYAQKAVLHPT 179 (507)
Q Consensus 167 l~~~i~~~i~~~~ 179 (507)
+|..|.+.+....
T Consensus 158 if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 158 IFQAIAEKLPCSD 170 (200)
T ss_pred HHHHHHHhccCcc
Confidence 9999999886554
No 9
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.6e-29 Score=221.66 Aligned_cols=173 Identities=16% Similarity=0.271 Sum_probs=151.2
Q ss_pred CCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHH
Q 010548 1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNE 78 (507)
Q Consensus 1 m~~m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 78 (507)
+++|+.+.....+||+++|++|||||+|+.|+..+.|...+.++.. +.. ..+..+...+.+++|||+|++++..+...
T Consensus 1 ~~~~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~s 80 (207)
T KOG0078|consen 1 LSAMAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTA 80 (207)
T ss_pred CCccccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHH
Confidence 4678877788899999999999999999999999998777554222 111 33344567889999999999999999999
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (507)
Q Consensus 79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (507)
|+++|+++++|||+++..||+++.. |++.+.++.+ ++|++|||||+|+...+.+ ..+..+.++.++|. +++|+|
T Consensus 81 YyrgA~gi~LvyDitne~Sfeni~~-W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V--~~e~ge~lA~e~G~--~F~EtS 155 (207)
T KOG0078|consen 81 YYRGAMGILLVYDITNEKSFENIRN-WIKNIDEHASDDVVKILVGNKCDLEEKRQV--SKERGEALAREYGI--KFFETS 155 (207)
T ss_pred HHhhcCeeEEEEEccchHHHHHHHH-HHHHHHhhCCCCCcEEEeeccccccccccc--cHHHHHHHHHHhCC--eEEEcc
Confidence 9999999999999999999999997 9999999865 8999999999999998877 56778999999986 799999
Q ss_pred cccCCCchHHHHHHHHHHcCC
Q 010548 158 ATTMIQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 158 A~~g~gi~~l~~~i~~~i~~~ 178 (507)
|++|.||.+.|..|++.++.+
T Consensus 156 Ak~~~NI~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 156 AKTNFNIEEAFLSLARDILQK 176 (207)
T ss_pred ccCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999988753
No 10
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=99.96 E-value=1.6e-29 Score=196.50 Aligned_cols=89 Identities=63% Similarity=1.017 Sum_probs=85.3
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCC
Q 010548 227 NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306 (507)
Q Consensus 227 ~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~ 306 (507)
+.+++++++++++++|++.+|+|++++|||++||++|+++|+++||+||+|+|||+|||+|+|+|.++|++..++++|+|
T Consensus 1 n~pL~~~el~~ik~~v~~~~~~gv~~~GiT~~GFl~L~~lfierGR~ETtW~vLR~FgY~d~L~L~d~~l~p~l~v~~~~ 80 (89)
T PF08356_consen 1 NKPLQPQELEDIKKVVRENIPDGVNDNGITLDGFLFLNKLFIERGRHETTWTVLRKFGYDDDLSLSDDFLYPKLDVPPDQ 80 (89)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCcCCCccchhhHHHHHHHHHHhCcchHHHHHHHHcCCCCcceeccccCCCCccCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999993389999999
Q ss_pred ceecCHhHH
Q 010548 307 SVELASEAV 315 (507)
Q Consensus 307 ~~~~s~~~~ 315 (507)
++|||+.|+
T Consensus 81 svELS~~gy 89 (89)
T PF08356_consen 81 SVELSPEGY 89 (89)
T ss_pred eeecCcCcC
Confidence 999999984
No 11
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.96 E-value=5.9e-28 Score=220.16 Aligned_cols=164 Identities=26% Similarity=0.404 Sum_probs=136.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D 91 (507)
+||+++|++|||||||+.+++.+.|...+.++.. .......++...+++.+|||+|++++..+...+++.+|++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 6999999999999999999999999776555443 333334455567899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC---------ccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN---------ATSLEEVMGPIMQQFREIETCVECSATTMI 162 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 162 (507)
++++.||+.+...|++.+++..++.|++|||||+|+.+.+. . ...++...+++.++. .+++||||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-v~~~~~~~~a~~~~~-~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASP-ITTAQGEELRKQIGA-AAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCC-CCHHHHHHHHHHcCC-CEEEECCCCccc
Confidence 99999999985459999987767899999999999966431 1 245567778877764 259999999999
Q ss_pred CchHHHHHHHHHHcCC
Q 010548 163 QVPDVFYYAQKAVLHP 178 (507)
Q Consensus 163 gi~~l~~~i~~~i~~~ 178 (507)
||+++|+.+++.+..+
T Consensus 160 nV~~~F~~~~~~~~~~ 175 (176)
T cd04133 160 NVKAVFDAAIKVVLQP 175 (176)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999987554
No 12
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.3e-28 Score=213.93 Aligned_cols=166 Identities=18% Similarity=0.233 Sum_probs=141.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
..+.+||+++|+.+|||||||+|++.+.|...+..++.--- ..+.+....+++++|||+|+++|+.+++.|+++++++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 45569999999999999999999999999888876333211 2233446678999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhcC-C-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRLE-I-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 164 (507)
|+|||+++..||++... |++.+++.. . ++-|+|||||.||.+++++ ..++.+..+++++. .|+++||+.|.||
T Consensus 99 viVyDit~~~Sfe~t~k-Wi~dv~~e~gs~~viI~LVGnKtDL~dkrqv--s~eEg~~kAkel~a--~f~etsak~g~NV 173 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSK-WIEDVRRERGSDDVIIFLVGNKTDLSDKRQV--SIEEGERKAKELNA--EFIETSAKAGENV 173 (221)
T ss_pred EEEEeccccchHHHHHH-HHHHHHhccCCCceEEEEEcccccccchhhh--hHHHHHHHHHHhCc--EEEEecccCCCCH
Confidence 99999999999999986 999988764 3 4778899999999999887 45566688888886 6999999999999
Q ss_pred hHHHHHHHHHHcCCC
Q 010548 165 PDVFYYAQKAVLHPT 179 (507)
Q Consensus 165 ~~l~~~i~~~i~~~~ 179 (507)
.++|..|..++....
T Consensus 174 k~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 174 KQLFRRIAAALPGME 188 (221)
T ss_pred HHHHHHHHHhccCcc
Confidence 999999888775543
No 13
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.96 E-value=6.6e-28 Score=221.16 Aligned_cols=164 Identities=26% Similarity=0.378 Sum_probs=137.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
...+||+++|++|||||||+++++.+.|...+.++. ..++....++...+.+.+|||+|++++..+.+.+++++|++|+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 346899999999999999999999999877755433 3334444556667899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEEEe
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVEC 156 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (507)
|||++++.||+.+...|.+.+++..++.|++|||||+|+... +.+ ..++...++++++.. +|+||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v--~~~~~~~~a~~~~~~-~~~E~ 159 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPV--SYDQGANMAKQIGAA-TYIEC 159 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCC--CHHHHHHHHHHcCCC-EEEEC
Confidence 999999999999855599999988788999999999999642 223 456688888888742 69999
Q ss_pred CcccCCC-chHHHHHHHHHHc
Q 010548 157 SATTMIQ-VPDVFYYAQKAVL 176 (507)
Q Consensus 157 SA~~g~g-i~~l~~~i~~~i~ 176 (507)
||++|.| |+++|+.+++.++
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999988654
No 14
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.95 E-value=1.6e-27 Score=220.86 Aligned_cols=168 Identities=26% Similarity=0.398 Sum_probs=136.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
..+||+++|++|||||||+.++..+.|...+.++.. .+.....++...+.+.+|||+|++++..++..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 458999999999999999999999998766544432 2333334556678999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc----------cchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
||++++.||+.+...|...++...++.|++|||||+|+.+.... ....++...++++++.. ++++|||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~-~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAV-KYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCc-EEEEeCCC
Confidence 99999999999976698888776678999999999999754210 01334566777777632 69999999
Q ss_pred cCCCchHHHHHHHHHHcCCC
Q 010548 160 TMIQVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i~~~~ 179 (507)
+|.||+++|+.+++.+..+.
T Consensus 161 ~g~~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred CCCCHHHHHHHHHHHHhccc
Confidence 99999999999999887654
No 15
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=7.3e-28 Score=203.43 Aligned_cols=169 Identities=21% Similarity=0.296 Sum_probs=143.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCC
Q 010548 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (507)
Q Consensus 7 ~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (507)
+.....+||+++|.+|||||||+-+++.+.|....+.++. ++. ..+.++.+.+++.||||+|+++|+.+.+.|+++|.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 3455679999999999999999999999999777665222 222 34556678899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548 85 AVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (507)
Q Consensus 85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 162 (507)
++|+|||++.+++|..+.. |++++.-++ +++-.++||||+|...++.+ ..++...++++++. -++||||++.+
T Consensus 86 GiIlVYDVT~Rdtf~kLd~-W~~Eld~Ystn~diikmlVgNKiDkes~R~V--~reEG~kfAr~h~~--LFiE~SAkt~~ 160 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDI-WLKELDLYSTNPDIIKMLVGNKIDKESERVV--DREEGLKFARKHRC--LFIECSAKTRE 160 (209)
T ss_pred eeEEEEEccchhhHHhHHH-HHHHHHhhcCCccHhHhhhcccccchhcccc--cHHHHHHHHHhhCc--EEEEcchhhhc
Confidence 9999999999999999965 999998875 45677899999998877776 56678888999986 49999999999
Q ss_pred CchHHHHHHHHHHcCCCC
Q 010548 163 QVPDVFYYAQKAVLHPTA 180 (507)
Q Consensus 163 gi~~l~~~i~~~i~~~~~ 180 (507)
||...|+.++..+...+.
T Consensus 161 ~V~~~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 161 NVQCCFEELVEKIIETPS 178 (209)
T ss_pred cHHHHHHHHHHHHhcCcc
Confidence 999999999999876543
No 16
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=1.6e-27 Score=218.09 Aligned_cols=162 Identities=28% Similarity=0.372 Sum_probs=134.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
++||+++|++|||||||++++.++.|...+.++. ..+.....++...+.+.+|||+|++.+..+.+.+++.+|++|+||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 4799999999999999999999999877754433 333334455566789999999999999988999999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVECSA 158 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (507)
|++++.||+++...|.+.+++..++.|+++||||+|+... +.+ ..++...++++++.. +|+||||
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v--~~~e~~~~a~~~~~~-~~~E~SA 157 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPV--SYEQGCAIAKQLGAE-IYLECSA 157 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCC--CHHHHHHHHHHhCCC-EEEECcc
Confidence 9999999999754599999988788999999999999642 223 455678888888742 6999999
Q ss_pred ccCCC-chHHHHHHHHHHc
Q 010548 159 TTMIQ-VPDVFYYAQKAVL 176 (507)
Q Consensus 159 ~~g~g-i~~l~~~i~~~i~ 176 (507)
++|+| |+++|..+++..+
T Consensus 158 ~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 158 FTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CcCCcCHHHHHHHHHHHHh
Confidence 99995 9999999988654
No 17
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.95 E-value=3.1e-27 Score=217.82 Aligned_cols=163 Identities=18% Similarity=0.214 Sum_probs=136.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
...+||+++|++|||||||+.++..+.+...+.++.. .. +....++...+.+.+|||+|++.+..++..+++.+|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 3468999999999999999999999887665543221 11 122344555689999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
+|||++++.||+.+.. |++.+.+..++.|+||||||+|+...+.+ ..+++..+++..+. ++++|||++|.||+++
T Consensus 84 lVfD~t~~~Sf~~~~~-w~~~i~~~~~~~piilVGNK~DL~~~~~v--~~~~~~~~a~~~~~--~~~e~SAk~g~~V~~~ 158 (189)
T cd04121 84 LVYDITNRWSFDGIDR-WIKEIDEHAPGVPKILVGNRLHLAFKRQV--ATEQAQAYAERNGM--TFFEVSPLCNFNITES 158 (189)
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECccchhccCC--CHHHHHHHHHHcCC--EEEEecCCCCCCHHHH
Confidence 9999999999999975 99999887778999999999999876665 35567788877763 7999999999999999
Q ss_pred HHHHHHHHcC
Q 010548 168 FYYAQKAVLH 177 (507)
Q Consensus 168 ~~~i~~~i~~ 177 (507)
|++|++.+..
T Consensus 159 F~~l~~~i~~ 168 (189)
T cd04121 159 FTELARIVLM 168 (189)
T ss_pred HHHHHHHHHH
Confidence 9999987753
No 18
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=4.3e-27 Score=222.63 Aligned_cols=167 Identities=25% Similarity=0.304 Sum_probs=139.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV-HAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
....+||+++|++|||||||+++|+.+.|...+.++ ...++....+....+.+.||||+|++.+..+...++++||++|
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 345789999999999999999999999987775443 3444444555667889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEEE
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVE 155 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (507)
+|||++++.||+.+...|+..+++..++.|+||||||+|+... +.+ ..++...++++++.. .|++
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~V--s~~e~~~~a~~~~~~-~~~E 166 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPI--SYEQGCALAKQLGAE-VYLE 166 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcC--CHHHHHHHHHHcCCC-EEEE
Confidence 9999999999998644599999887778999999999999642 233 445678889888742 5899
Q ss_pred eCcccCC-CchHHHHHHHHHHcCC
Q 010548 156 CSATTMI-QVPDVFYYAQKAVLHP 178 (507)
Q Consensus 156 ~SA~~g~-gi~~l~~~i~~~i~~~ 178 (507)
|||++|. ||+++|+.+++.++..
T Consensus 167 tSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHHHHh
Confidence 9999998 8999999999887654
No 19
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.9e-27 Score=206.50 Aligned_cols=163 Identities=19% Similarity=0.257 Sum_probs=141.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
...+|++++|+.|||||+|+.|++.+.|.+....+..--- ....++.+.++++||||+|++.+.+....||+.|.++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 4568999999999999999999999999777654221111 22345577899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
+|||+++++||..+.. |+..+++.. +|..++|+|||+||...+.+ ..++.+.++++.+- .++++||++++||+|
T Consensus 84 LVydit~r~sF~hL~~-wL~D~rq~~~~NmvImLiGNKsDL~~rR~V--s~EEGeaFA~ehgL--ifmETSakt~~~VEE 158 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTS-WLEDARQHSNENMVIMLIGNKSDLEARREV--SKEEGEAFAREHGL--IFMETSAKTAENVEE 158 (216)
T ss_pred EEEEccchhhHHHHHH-HHHHHHHhcCCCcEEEEEcchhhhhccccc--cHHHHHHHHHHcCc--eeehhhhhhhhhHHH
Confidence 9999999999999997 999999884 78999999999999998877 67789999999886 488999999999999
Q ss_pred HHHHHHHHHcC
Q 010548 167 VFYYAQKAVLH 177 (507)
Q Consensus 167 l~~~i~~~i~~ 177 (507)
.|......+..
T Consensus 159 aF~nta~~Iy~ 169 (216)
T KOG0098|consen 159 AFINTAKEIYR 169 (216)
T ss_pred HHHHHHHHHHH
Confidence 99988776643
No 20
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.95 E-value=4.2e-27 Score=214.97 Aligned_cols=161 Identities=22% Similarity=0.356 Sum_probs=131.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D 91 (507)
+||+++|++|||||||++++..+.|...+.++. ..+.....+....+.+.+|||+|++++...+..+++.+|++|+|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 799999999999999999999999876654443 2333333444556889999999999998888899999999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC-----------ccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----------ATSLEEVMGPIMQQFREIETCVECSATT 160 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (507)
++++.|++.+...|...++...+++|+|+|+||+|+..... . ...++...++++++. ..+++|||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~-v~~~~~~~~a~~~~~-~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP-ITPETGEKLARDLKA-VKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCC-cCHHHHHHHHHHhCC-cEEEEecCCC
Confidence 99999999997669999987767899999999999865411 1 233455667766653 2699999999
Q ss_pred CCCchHHHHHHHHHH
Q 010548 161 MIQVPDVFYYAQKAV 175 (507)
Q Consensus 161 g~gi~~l~~~i~~~i 175 (507)
|.|++++|+.+++++
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998864
No 21
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.95 E-value=1.1e-26 Score=216.23 Aligned_cols=161 Identities=19% Similarity=0.342 Sum_probs=132.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+.|+++|+.|||||||++++..+.|...+.++.. ++. ....+....+.+.+|||+|++.+..++..++++||++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 3699999999999999999999998777655433 221 23444555689999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
|++++.||+.+.. |+..+++.. .+.|+++||||+|+...+.+ .......++++.... .+++|||++|.||+++|+
T Consensus 81 Dvtd~~Sf~~l~~-w~~~i~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~a~~~~~~-~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLPK-WMKMIDKYASEDAELLLVGNKLDCETDREI--SRQQGEKFAQQITGM-RFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHhcCCC-EEEEecCCCCCCHHHHHH
Confidence 9999999999986 999887754 47999999999999876655 344456666665322 699999999999999999
Q ss_pred HHHHHHcC
Q 010548 170 YAQKAVLH 177 (507)
Q Consensus 170 ~i~~~i~~ 177 (507)
++++.+..
T Consensus 157 ~l~~~~~~ 164 (202)
T cd04120 157 KLVDDILK 164 (202)
T ss_pred HHHHHHHH
Confidence 99987754
No 22
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=2.7e-27 Score=205.15 Aligned_cols=173 Identities=21% Similarity=0.272 Sum_probs=142.6
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC--CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhc
Q 010548 4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK 81 (507)
Q Consensus 4 m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 81 (507)
|+.......+||+|+|++|||||||+|++++++|...+..++. -.|....++..-+.++||||+|+++|.++--.+++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 3443445679999999999999999999999999777554332 22344555666789999999999999999999999
Q ss_pred cCCEEEEEEeCCChhhHHHHHHhHHHHHHhc-C----CCCcEEEEEecccCCCCC-CccchhhhhHHHHHHhcccCcEEE
Q 010548 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRL-E----IKVPIIVAGCKLDLRGDH-NATSLEEVMGPIMQQFREIETCVE 155 (507)
Q Consensus 82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~-~----~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 155 (507)
+||++++|||++++.||+.+.. |.+++-.. . ..-|+||+|||+|+.... .+ .....+..++...+.+ ||||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~-VS~~~Aq~WC~s~gni-pyfE 157 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQ-VSEKKAQTWCKSKGNI-PYFE 157 (210)
T ss_pred CCceEEEEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCccce-eeHHHHHHHHHhcCCc-eeEE
Confidence 9999999999999999999997 98875443 2 257999999999998742 23 3667788999999877 8999
Q ss_pred eCcccCCCchHHHHHHHHHHcCCC
Q 010548 156 CSATTMIQVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 156 ~SA~~g~gi~~l~~~i~~~i~~~~ 179 (507)
+|||...||.+.|+.+.+.++..+
T Consensus 158 tSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 158 TSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred ecccccccHHHHHHHHHHHHHhcc
Confidence 999999999999999999886554
No 23
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.95 E-value=1.7e-26 Score=217.43 Aligned_cols=169 Identities=26% Similarity=0.368 Sum_probs=139.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
.+||+|||++|||||||+++|+.+.|...+.+ ....+.....++...+.+.+|||+|++.+..+.+.+++.+|++|+||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 37999999999999999999999998777544 44444444556667789999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC----------ccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN----------ATSLEEVMGPIMQQFREIETCVECSATT 160 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (507)
|+++++||+.+...|...++...++.|+||||||+|+..+.. .....+....+++.++.. +|+||||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~-~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAV-SYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCC-EEEEcCCCc
Confidence 999999999997779988888778999999999999965311 002345677788888743 799999999
Q ss_pred CCC-chHHHHHHHHHHcCCCCC
Q 010548 161 MIQ-VPDVFYYAQKAVLHPTAP 181 (507)
Q Consensus 161 g~g-i~~l~~~i~~~i~~~~~~ 181 (507)
+.| |+++|+.++.+++.+..+
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~~ 181 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGHR 181 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccCC
Confidence 985 999999999987765444
No 24
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=2.2e-26 Score=208.47 Aligned_cols=165 Identities=53% Similarity=0.908 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~ 92 (507)
+||+++|++|||||||+++|.++.+...+++..+.++....+....+++.+|||+|.+.+...+..+++.+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999999987666666666666666667789999999999988877778888999999999999
Q ss_pred CChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHH
Q 010548 93 NQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ 172 (507)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~ 172 (507)
+++.+++.+...|.+.++....++|+++|+||+|+.+.......++....++..+....++++|||++|.|++++|+.+.
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 160 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQ 160 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHH
Confidence 99999999876699988876668999999999999765432112334445555565444799999999999999999999
Q ss_pred HHHcC
Q 010548 173 KAVLH 177 (507)
Q Consensus 173 ~~i~~ 177 (507)
+.++.
T Consensus 161 ~~~~~ 165 (166)
T cd01893 161 KAVLH 165 (166)
T ss_pred HHhcC
Confidence 88764
No 25
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.94 E-value=2.2e-26 Score=209.70 Aligned_cols=162 Identities=17% Similarity=0.306 Sum_probs=133.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
.+||+++|++|||||||++++.++.|...+.++.. .+.....+....+.+.+|||+|++++..++..+++.+|++|+||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 47999999999999999999999998766544433 33334455566788999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
|++++.||+.+.. |...+.+. .+++|+++|+||+|+...+.+ ..+....+++.++. ++++|||++|.||+++|
T Consensus 82 d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v--~~~~~~~~a~~~~~--~~~e~Sa~~~~~v~~~f 156 (172)
T cd04141 82 SVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQRQV--TTEEGRNLAREFNC--PFFETSAALRHYIDDAF 156 (172)
T ss_pred ECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhcCcc--CHHHHHHHHHHhCC--EEEEEecCCCCCHHHHH
Confidence 9999999999986 87777653 347999999999999776555 33455677777763 79999999999999999
Q ss_pred HHHHHHHcCC
Q 010548 169 YYAQKAVLHP 178 (507)
Q Consensus 169 ~~i~~~i~~~ 178 (507)
++|.+.+...
T Consensus 157 ~~l~~~~~~~ 166 (172)
T cd04141 157 HGLVREIRRK 166 (172)
T ss_pred HHHHHHHHHh
Confidence 9999877643
No 26
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.94 E-value=2.6e-26 Score=209.51 Aligned_cols=160 Identities=24% Similarity=0.343 Sum_probs=131.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D 91 (507)
+||+++|++|||||||+.+++.+.|...+.++.. .......++...+.+.+|||+|++.+..++..+++.+|++|+|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 7999999999999999999999988776544333 222333455556889999999999999888999999999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC-----------ccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----------ATSLEEVMGPIMQQFREIETCVECSATT 160 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (507)
++++.||+.+...|...++...++.|+++|+||+|+..... . ...++...++++++.. ++++|||++
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~-~~~e~Sa~~ 159 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP-ITYPQGLAMAKEIGAV-KYLECSALT 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCC-CCHHHHHHHHHHcCCc-EEEEecccc
Confidence 99999999997669888877767899999999999965321 1 2345566778777643 789999999
Q ss_pred CCCchHHHHHHHHH
Q 010548 161 MIQVPDVFYYAQKA 174 (507)
Q Consensus 161 g~gi~~l~~~i~~~ 174 (507)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998764
No 27
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=6e-27 Score=195.11 Aligned_cols=162 Identities=23% Similarity=0.277 Sum_probs=142.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
..-+|.+|+|++|||||||+-++..+.|..++.++.. +.. .+.++.+..+++.||||+|++.|+.+...++++.++++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 3457899999999999999999999999888665332 222 34555677899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
+|||+++.+||.+... |+++++..++..|-++||||+|.+..+.+ ..+.+..++.+.+. .+||+|||.+.|++.+
T Consensus 86 vVYDVTn~ESF~Nv~r-WLeei~~ncdsv~~vLVGNK~d~~~RrvV--~t~dAr~~A~~mgi--e~FETSaKe~~NvE~m 160 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVKR-WLEEIRNNCDSVPKVLVGNKNDDPERRVV--DTEDARAFALQMGI--ELFETSAKENENVEAM 160 (198)
T ss_pred EEEECcchhhhHhHHH-HHHHHHhcCccccceecccCCCCccceee--ehHHHHHHHHhcCc--hheehhhhhcccchHH
Confidence 9999999999999996 99999999999999999999999887666 56778889998885 6999999999999999
Q ss_pred HHHHHHHHc
Q 010548 168 FYYAQKAVL 176 (507)
Q Consensus 168 ~~~i~~~i~ 176 (507)
|.-|.+.++
T Consensus 161 F~cit~qvl 169 (198)
T KOG0079|consen 161 FHCITKQVL 169 (198)
T ss_pred HHHHHHHHH
Confidence 999988764
No 28
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=3.9e-26 Score=211.30 Aligned_cols=167 Identities=22% Similarity=0.269 Sum_probs=132.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D 91 (507)
.||+++|++|||||||+++|.++.|...+.++. ..+.....++...+.+.+|||+|++.+..+...+++.+|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 389999999999999999999998876644432 2322223344456889999999999998888889999999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCcc----------chhhhhHHHHHHhcccCcEEEeCcccC
Q 010548 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT----------SLEEVMGPIMQQFREIETCVECSATTM 161 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~SA~~g 161 (507)
++++.||+.+...|+..++...++.|+++|+||+|+....... ...+....++...+. .+|++|||++|
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~SAk~~ 159 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINA-LRYLECSAKLN 159 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCC-CEEEEccCCcC
Confidence 9999999998766999998877789999999999997653210 122334555555553 36999999999
Q ss_pred CCchHHHHHHHHHHcCCCC
Q 010548 162 IQVPDVFYYAQKAVLHPTA 180 (507)
Q Consensus 162 ~gi~~l~~~i~~~i~~~~~ 180 (507)
.||+++|++|++.+..+..
T Consensus 160 ~~v~e~f~~l~~~~~~~~~ 178 (189)
T cd04134 160 RGVNEAFTEAARVALNVRP 178 (189)
T ss_pred CCHHHHHHHHHHHHhcccc
Confidence 9999999999999876554
No 29
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.94 E-value=1e-25 Score=204.03 Aligned_cols=160 Identities=23% Similarity=0.324 Sum_probs=130.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+||+++|++|||||||++++.++.|...++++.. ... ....+....+.+.+|||||++.+......+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999999988766554332 221 2234455568899999999999999899999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
||++++.+++.+.. |+..++... ++.|+++|+||+|+...+.. ..+....+++..+. ++++|||++|.|++++|
T Consensus 82 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 82 YDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLEAQRDV--TYEEAKQFADENGL--LFLECSAKTGENVEDAF 156 (166)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccccCc--CHHHHHHHHHHcCC--EEEEEECCCCCCHHHHH
Confidence 99999999999986 888876653 47899999999999876555 33455666766653 79999999999999999
Q ss_pred HHHHHHHc
Q 010548 169 YYAQKAVL 176 (507)
Q Consensus 169 ~~i~~~i~ 176 (507)
..+.+.+.
T Consensus 157 ~~l~~~~~ 164 (166)
T cd04122 157 LETAKKIY 164 (166)
T ss_pred HHHHHHHh
Confidence 99987653
No 30
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.94 E-value=2.6e-25 Score=210.29 Aligned_cols=162 Identities=18% Similarity=0.283 Sum_probs=131.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
...+||+++|++|||||||+++++.+.+...+.++..... .........+.+.+|||+|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 6789999999999999999999999888766555433222 22233445689999999999999998999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
+|||++++.|++.+.. |+..+++..++.|+++||||+|+... .+ . .+.. .+....+ .+|++|||++|.||+++
T Consensus 91 lvfD~~~~~s~~~i~~-w~~~i~~~~~~~piilvgNK~Dl~~~-~v-~-~~~~-~~~~~~~--~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 91 IMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR-QV-K-AKQV-TFHRKKN--LQYYEISAKSNYNFEKP 163 (219)
T ss_pred EEEeCCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEEchhhhhc-cC-C-HHHH-HHHHhcC--CEEEEcCCCCCCCHHHH
Confidence 9999999999999986 99999887778999999999999643 22 1 2222 4444443 36999999999999999
Q ss_pred HHHHHHHHcCC
Q 010548 168 FYYAQKAVLHP 178 (507)
Q Consensus 168 ~~~i~~~i~~~ 178 (507)
|++|.+.+...
T Consensus 164 f~~l~~~~~~~ 174 (219)
T PLN03071 164 FLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHcC
Confidence 99999888643
No 31
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.94 E-value=9.3e-26 Score=203.26 Aligned_cols=159 Identities=25% Similarity=0.321 Sum_probs=128.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
.+||+++|++|||||||+++++.+.+...+.++... ......+....+.+.+|||||++++..++..+++.+|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 379999999999999999999998887665554332 2233344455678899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
|++++.+++.+.. |...+.+. ..++|+++|+||+|+...+.. ..+....+++.++ .++++|||++|.|+.++|
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 81 SITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDERVV--SREEGQALARQWG--CPFYETSAKSKINVDEVF 155 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccee--cHHHHHHHHHHcC--CeEEEecCCCCCCHHHHH
Confidence 9999999999886 88877654 247999999999999765444 3344556666666 379999999999999999
Q ss_pred HHHHHHH
Q 010548 169 YYAQKAV 175 (507)
Q Consensus 169 ~~i~~~i 175 (507)
++|.+.+
T Consensus 156 ~~l~~~~ 162 (163)
T cd04136 156 ADLVRQI 162 (163)
T ss_pred HHHHHhc
Confidence 9998754
No 32
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.94 E-value=1e-25 Score=205.42 Aligned_cols=162 Identities=25% Similarity=0.399 Sum_probs=130.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC
Q 010548 15 VVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (507)
Q Consensus 15 V~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~ 93 (507)
|+|+|++|||||||++++.++.+...+.+.. ........++...+.+.+|||+|++.+..+...+++.+|++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 6899999999999999999998866644332 222223344455678999999999999888889999999999999999
Q ss_pred ChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC----------ccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548 94 QQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN----------ATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (507)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 163 (507)
++.|++.+...|+..+.+..+++|+++|+||+|+..... .....++...+++.++.. ++++|||++|.|
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 159 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAV-KYLECSALTQEG 159 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCc-EEEEecCCCCCC
Confidence 999999997679999988777899999999999975321 001234456677777643 699999999999
Q ss_pred chHHHHHHHHHHcC
Q 010548 164 VPDVFYYAQKAVLH 177 (507)
Q Consensus 164 i~~l~~~i~~~i~~ 177 (507)
|+++|+.+.+.++.
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987654
No 33
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.94 E-value=1.8e-25 Score=201.83 Aligned_cols=159 Identities=25% Similarity=0.342 Sum_probs=128.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
++||+++|++|||||||+++++.+.+...+.++... ......+....+.+.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 379999999999999999999988876665544332 2233444455788899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
|++++.+++.+.. |...+.+. ..+.|+++|+||+|+...... ..+....+++.++. ++++|||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVV--GKEQGQNLARQWGC--AFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhccEE--cHHHHHHHHHHhCC--EEEEeeCCCCCCHHHHH
Confidence 9999999999886 77776543 357999999999999775444 23345566666663 79999999999999999
Q ss_pred HHHHHHH
Q 010548 169 YYAQKAV 175 (507)
Q Consensus 169 ~~i~~~i 175 (507)
.++.+.+
T Consensus 156 ~~l~~~l 162 (164)
T cd04175 156 YDLVRQI 162 (164)
T ss_pred HHHHHHh
Confidence 9998754
No 34
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.93 E-value=2.2e-25 Score=201.68 Aligned_cols=156 Identities=22% Similarity=0.269 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D 91 (507)
+||+++|++|||||||+++++++.|...+.++.+... .........+.+.+|||+|++.+..+...+++.+|++|+|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 7999999999999999999999988766555443322 223344556889999999999999888899999999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhcC----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 92 CNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
++++.+++.+.. |+..++... +++|+++|+||+|+...+.+ .......++..++ .++++|||++|.|++++
T Consensus 82 ~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 82 VTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHKREV--SSNEGAACATEWN--CAFMETSAKTNHNVQEL 156 (165)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECccccccCee--cHHHHHHHHHHhC--CcEEEeecCCCCCHHHH
Confidence 999999999886 777776532 47999999999999765544 2333455555554 36999999999999999
Q ss_pred HHHHHH
Q 010548 168 FYYAQK 173 (507)
Q Consensus 168 ~~~i~~ 173 (507)
|++|.+
T Consensus 157 f~~l~~ 162 (165)
T cd04140 157 FQELLN 162 (165)
T ss_pred HHHHHh
Confidence 999875
No 35
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.93 E-value=2.9e-25 Score=208.99 Aligned_cols=159 Identities=25% Similarity=0.287 Sum_probs=125.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~ 92 (507)
+||+|+|.+|||||||+++|+.+.|....++...... ......+.+.+|||+|++.+..+...+++.+|++|+|||+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~---~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv 77 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFY---LKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDV 77 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEE---EEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEEC
Confidence 5899999999999999999999988643333222211 1123467899999999999999999999999999999999
Q ss_pred CChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCC-------------------CCCccchhhhhHHHHHHhccc---
Q 010548 93 NQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG-------------------DHNATSLEEVMGPIMQQFREI--- 150 (507)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~-------------------~~~~~~~~~~~~~~~~~~~~~--- 150 (507)
+++.||+.+...|....+...++.|+|||+||+|+.+ .+.+ ..++...++++++..
T Consensus 78 t~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v--~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 78 SNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQV--TLEDAKAFYKRINKYKML 155 (220)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccC--CHHHHHHHHHHhCccccc
Confidence 9999999998744444433345799999999999975 2333 445677788777532
Q ss_pred ---------CcEEEeCcccCCCchHHHHHHHHHHc
Q 010548 151 ---------ETCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 151 ---------~~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
.+|+||||++|.||+++|..+++.++
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 36999999999999999999998764
No 36
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.93 E-value=2.9e-25 Score=200.84 Aligned_cols=159 Identities=18% Similarity=0.249 Sum_probs=128.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+||+++|++|||||||++++.+..+...+.++... +. .........+.+.+|||+|++.+......+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999987665543321 11 11222344588999999999999888999999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
|++++.+++.+.. |...+++.. .++|+++|+||+|+.+.+.. ..+....++..++. +++++||++|.|++++|+
T Consensus 82 d~~~~~s~~~~~~-~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 82 DITNEESFNAVQD-WSTQIKTYSWDNAQVILVGNKCDMEDERVV--SSERGRQLADQLGF--EFFEASAKENINVKQVFE 156 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCCEEEEEECcccCccccc--CHHHHHHHHHHcCC--EEEEEECCCCCCHHHHHH
Confidence 9999999999986 999887764 47899999999999776544 23445566666653 699999999999999999
Q ss_pred HHHHHHc
Q 010548 170 YAQKAVL 176 (507)
Q Consensus 170 ~i~~~i~ 176 (507)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (165)
T cd01865 157 RLVDIIC 163 (165)
T ss_pred HHHHHHH
Confidence 9987653
No 37
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.93 E-value=3.4e-25 Score=200.81 Aligned_cols=160 Identities=17% Similarity=0.284 Sum_probs=130.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+||+++|++|||||||++++.+..|...+.++..... ....+....+.+.+|||+|++.+......+++.+|++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 58999999999999999999999998777554333221 2233445567899999999998888888999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
||++++.+++.+.. |+..+.+.. .+.|+++|+||+|+.+.+.. ..+....++..++. ++++|||++|.|++++|
T Consensus 83 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~~~ 157 (167)
T cd01867 83 YDITDEKSFENIRN-WMRNIEEHASEDVERMLVGNKCDMEEKRVV--SKEEGEALADEYGI--KFLETSAKANINVEEAF 157 (167)
T ss_pred EECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEECcccccccCC--CHHHHHHHHHHcCC--EEEEEeCCCCCCHHHHH
Confidence 99999999999986 999887753 47899999999999865544 33445566666653 79999999999999999
Q ss_pred HHHHHHHc
Q 010548 169 YYAQKAVL 176 (507)
Q Consensus 169 ~~i~~~i~ 176 (507)
+++.+.+.
T Consensus 158 ~~i~~~~~ 165 (167)
T cd01867 158 FTLAKDIK 165 (167)
T ss_pred HHHHHHHH
Confidence 99998764
No 38
>PTZ00369 Ras-like protein; Provisional
Probab=99.93 E-value=2.7e-25 Score=205.72 Aligned_cols=163 Identities=21% Similarity=0.321 Sum_probs=131.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
..+||+++|++|||||||++++.++.+...+.++.. .+.....++...+.+.+|||+|++++..++..+++.+|++++|
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 458999999999999999999999888766544332 2223344556678899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
||++++.+++.+.. |...+.+.. .+.|+++|+||+|+...+.+ .......+++.++. ++++|||++|.||.++
T Consensus 84 ~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i--~~~~~~~~~~~~~~--~~~e~Sak~~~gi~~~ 158 (189)
T PTZ00369 84 YSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSERQV--STGEGQELAKSFGI--PFLETSAKQRVNVDEA 158 (189)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccc--CHHHHHHHHHHhCC--EEEEeeCCCCCCHHHH
Confidence 99999999999986 888776542 47899999999999765544 23345556666653 7999999999999999
Q ss_pred HHHHHHHHcCC
Q 010548 168 FYYAQKAVLHP 178 (507)
Q Consensus 168 ~~~i~~~i~~~ 178 (507)
|++|.+.+...
T Consensus 159 ~~~l~~~l~~~ 169 (189)
T PTZ00369 159 FYELVREIRKY 169 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999877543
No 39
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.93 E-value=2.7e-25 Score=199.43 Aligned_cols=153 Identities=16% Similarity=0.206 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~ 92 (507)
+||+++|++|||||||+.+++.+.|...+++....+.....++...+.+.+|||+|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 58999999999999999999998887766554444444445555568899999999864 3567899999999999
Q ss_pred CChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCC--CCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRG--DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
+++.||+.+.. |++.+.... ++.|+++||||+|+.. .+.+ ..++...++++.+. +.|++|||++|.||+++|
T Consensus 76 ~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v--~~~~~~~~~~~~~~-~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 76 ENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNPRVI--DDARARQLCADMKR-CSYYETCATYGLNVERVF 151 (158)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCCccc--CHHHHHHHHHHhCC-CcEEEEecCCCCCHHHHH
Confidence 99999999986 988887654 4789999999999854 2333 34455667766543 379999999999999999
Q ss_pred HHHHHH
Q 010548 169 YYAQKA 174 (507)
Q Consensus 169 ~~i~~~ 174 (507)
+.+.+.
T Consensus 152 ~~~~~~ 157 (158)
T cd04103 152 QEAAQK 157 (158)
T ss_pred HHHHhh
Confidence 998764
No 40
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=2.7e-25 Score=207.79 Aligned_cols=162 Identities=18% Similarity=0.230 Sum_probs=130.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCccc-CCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
+||+|+|++|||||||+++|+++.+...+.++.. .+. ....+. ...+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999887666544332 111 223334 4578899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc-----CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~-----~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 164 (507)
||++++.+++.+.. |...+... ..++|+++|+||+|+...+.. ..+.+..+++..+. .++++|||++|.||
T Consensus 81 ~D~t~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLK-WKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK--DGEQMDQFCKENGF-IGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhcccCCCCCcEEEEEECCCccccccc--CHHHHHHHHHHcCC-ceEEEEeCCCCCCH
Confidence 99999999999975 88877643 247899999999999754443 34556777777762 37999999999999
Q ss_pred hHHHHHHHHHHcCC
Q 010548 165 PDVFYYAQKAVLHP 178 (507)
Q Consensus 165 ~~l~~~i~~~i~~~ 178 (507)
+++|++|.+.+...
T Consensus 157 ~e~f~~l~~~l~~~ 170 (201)
T cd04107 157 EEAMRFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887543
No 41
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.93 E-value=3.5e-25 Score=199.50 Aligned_cols=157 Identities=17% Similarity=0.267 Sum_probs=128.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+||+++|++|||||||+++++++.+...+.++.. ... ....+....+.+.+|||+|++.+..+...+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999988766444322 221 22344444678999999999999988999999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
|++++.|++.+.. |+..++.... +.|+++|+||+|+...+.+ ..+....+++.++ +++++|||++|.||+++|+
T Consensus 81 d~~~~~sf~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMK-WVSDVDEYAPEGVQKILIGNKADEEQKRQV--GDEQGNKLAKEYG--MDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHH
Confidence 9999999999986 9998876543 6899999999999876655 3455667777666 3799999999999999999
Q ss_pred HHHHH
Q 010548 170 YAQKA 174 (507)
Q Consensus 170 ~i~~~ 174 (507)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99764
No 42
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.4e-25 Score=186.88 Aligned_cols=163 Identities=17% Similarity=0.271 Sum_probs=138.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcc-cCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
..+|+.|+|+..||||||+.|+++..|..+...+.. .......+ ..+.+++++|||+|++.++.....++++|+++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 367999999999999999999999999887554222 22211111 2456899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
|||++|.+||..++. |.-.|+..+ .+.|+|+|+||||+..++.+ ..+....++.++|. .+||+|||.+.||.++
T Consensus 100 myDitNeeSf~svqd-w~tqIktysw~naqvilvgnKCDmd~eRvi--s~e~g~~l~~~LGf--efFEtSaK~NinVk~~ 174 (193)
T KOG0093|consen 100 MYDITNEESFNSVQD-WITQIKTYSWDNAQVILVGNKCDMDSERVI--SHERGRQLADQLGF--EFFETSAKENINVKQV 174 (193)
T ss_pred EEecCCHHHHHHHHH-HHHHheeeeccCceEEEEecccCCccceee--eHHHHHHHHHHhCh--HHhhhcccccccHHHH
Confidence 999999999999997 999998875 48999999999999988877 55678889999986 6999999999999999
Q ss_pred HHHHHHHHcCC
Q 010548 168 FYYAQKAVLHP 178 (507)
Q Consensus 168 ~~~i~~~i~~~ 178 (507)
|+.+...+...
T Consensus 175 Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 175 FERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHHH
Confidence 99998887554
No 43
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.93 E-value=3.5e-25 Score=203.18 Aligned_cols=161 Identities=17% Similarity=0.247 Sum_probs=130.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCccc----------CCceEEEEEeCCCCccchhhhHH
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFY----------PDRVPVTIIDTSSSLENKGKLNE 78 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~~----------~~~~~~~i~Dt~G~~~~~~~~~~ 78 (507)
..+||+++|++|||||||++++.++.+...+.++... .. ....+. ...+.+.+|||+|++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 4589999999999999999999999887665443321 11 111111 34588999999999999999999
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEe
Q 010548 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC 156 (507)
Q Consensus 79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (507)
+++.+|++++|||++++.|+.++.. |+..+... .++.|+++|+||+|+...+.+ ..+....+++.++. +++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRN-WMSQLQTHAYCENPDIVLCGNKADLEDQRQV--SEEQAKALADKYGI--PYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEeCccchhcCcc--CHHHHHHHHHHcCC--eEEEE
Confidence 9999999999999999999999986 99888764 347899999999999876555 33456777777763 79999
Q ss_pred CcccCCCchHHHHHHHHHHc
Q 010548 157 SATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 157 SA~~g~gi~~l~~~i~~~i~ 176 (507)
||++|.|++++|+.|.+.+.
T Consensus 158 Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988664
No 44
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.93 E-value=4.6e-25 Score=198.97 Aligned_cols=159 Identities=22% Similarity=0.311 Sum_probs=127.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
++||+++|++|||||||+++++.+.+...+.++.... .....+....+.+.+|||+|++++..++..+++.+|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 4799999999999999999999998877655543322 223344455678999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
|++++.|++++.. |...+.+.. .++|+++|+||+|+.....+ .......++..++. ++++|||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 81 SLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESEREV--SSAEGRALAEEWGC--PFMETSAKSKTMVNELF 155 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcCcc--CHHHHHHHHHHhCC--EEEEecCCCCCCHHHHH
Confidence 9999999999986 877776542 47999999999999765443 22335566666653 78999999999999999
Q ss_pred HHHHHHH
Q 010548 169 YYAQKAV 175 (507)
Q Consensus 169 ~~i~~~i 175 (507)
.++.+.+
T Consensus 156 ~~l~~~l 162 (163)
T cd04176 156 AEIVRQM 162 (163)
T ss_pred HHHHHhc
Confidence 9998643
No 45
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.93 E-value=3.4e-25 Score=205.25 Aligned_cols=160 Identities=22% Similarity=0.346 Sum_probs=128.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~ 92 (507)
||+++|.+|||||||+++|+.+.|...+.++... +.....+....+.+.+|||+|++++..+...+++.+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 6899999999999999999998887665554332 222233445567899999999999999999999999999999999
Q ss_pred CChhhHHHHHHhHHHHHHhcC----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 93 NQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~~----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
+++.|++.+.. |+..+.... .++|+++|+||+|+...+.+ .......++..++. +++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYEREV--STEEGAALARRLGC--EFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhccccCcc--CHHHHHHHHHHhCC--EEEEecCCCCCCHHHHH
Confidence 99999999986 887776532 47899999999999765554 23344566666663 69999999999999999
Q ss_pred HHHHHHHcCC
Q 010548 169 YYAQKAVLHP 178 (507)
Q Consensus 169 ~~i~~~i~~~ 178 (507)
+++.+.+...
T Consensus 156 ~~l~~~l~~~ 165 (190)
T cd04144 156 YTLVRALRQQ 165 (190)
T ss_pred HHHHHHHHHh
Confidence 9999877543
No 46
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.93 E-value=5.4e-25 Score=198.26 Aligned_cols=157 Identities=22% Similarity=0.279 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-e-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-T-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+||+++|++|||||||+++++++.+.+...++... . .....+....+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998876654432211 1 122334456788999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 170 (507)
|++++.+++++.. |+..+++..+++|+++|+||+|+... .......+++..+ .+++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSK-WYEELREYRPEIPCIVVANKIDLDPS-----VTQKKFNFAEKHN--LPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEECccCchh-----HHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHH
Confidence 9999999999875 99999877678999999999998532 1222334444444 37899999999999999999
Q ss_pred HHHHHcC
Q 010548 171 AQKAVLH 177 (507)
Q Consensus 171 i~~~i~~ 177 (507)
+.+.+..
T Consensus 153 l~~~~~~ 159 (161)
T cd04124 153 AIKLAVS 159 (161)
T ss_pred HHHHHHh
Confidence 9887653
No 47
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=5.3e-25 Score=204.13 Aligned_cols=157 Identities=28% Similarity=0.401 Sum_probs=122.7
Q ss_pred ceEEEEEcCCCCCHHHHHH-HHhcCCC-----CCCCCCCCC---CeeeCC--------cccCCceEEEEEeCCCCccchh
Q 010548 12 GVRVVVVGDRGTGKSSLIA-AAATESV-----PEKVPPVHA---PTRLPP--------DFYPDRVPVTIIDTSSSLENKG 74 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin-~l~~~~~-----~~~~~~~~~---~~t~~~--------~~~~~~~~~~i~Dt~G~~~~~~ 74 (507)
.+||+++|++|||||||+. ++.++.+ ...+.++.. .+.... .++...+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 6655443 333333331 121111 3455678999999999865 3
Q ss_pred hhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC-------------------CCccc
Q 010548 75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-------------------HNATS 135 (507)
Q Consensus 75 ~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~-------------------~~~~~ 135 (507)
....+++++|++|+|||++++.|++.+...|.+.++...++.|+++||||+|+... +.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V-- 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL-- 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCcc--
Confidence 45568999999999999999999999976699999887678999999999999642 333
Q ss_pred hhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHH
Q 010548 136 LEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKA 174 (507)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~ 174 (507)
..++...++++++. +|+||||++|.||+++|+.+++.
T Consensus 158 ~~~e~~~~a~~~~~--~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGI--PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCC--EEEEcCCCCCCCHHHHHHHHHHh
Confidence 45677888888874 79999999999999999998764
No 48
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.93 E-value=7e-25 Score=198.42 Aligned_cols=160 Identities=18% Similarity=0.284 Sum_probs=129.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+||+++|++|||||||+++++++.+...+.++.. ... ....+....+.+.+|||||++.+......+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999887655433322 111 2233344567899999999999988889999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
||+++++|+..+.. |+..+++.. ++.|+++|+||+|+.....+ ..+....++..++. +++++||++|.|++++|
T Consensus 82 ~d~~~~~s~~~l~~-~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 82 YDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTDKRVV--DYSEAQEFADELGI--PFLETSAKNATNVEQAF 156 (166)
T ss_pred EECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEEChhcccccCC--CHHHHHHHHHHcCC--eEEEEECCCCcCHHHHH
Confidence 99999999999987 999887764 47899999999998765544 23445666666653 79999999999999999
Q ss_pred HHHHHHHc
Q 010548 169 YYAQKAVL 176 (507)
Q Consensus 169 ~~i~~~i~ 176 (507)
+.|.+.+.
T Consensus 157 ~~i~~~~~ 164 (166)
T cd01869 157 MTMAREIK 164 (166)
T ss_pred HHHHHHHH
Confidence 99988653
No 49
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.93 E-value=6.7e-25 Score=198.71 Aligned_cols=158 Identities=18% Similarity=0.280 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+||+++|++|||||||+++++.+.+...+.++..... .........+.+.+|||+|++.+..+...+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999998887655544332221 22223345688999999999988888889999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 170 (507)
|++++.+++.+.. |...+.+...++|+++|+||+|+.... . . .....+.+..+ .++++|||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~piiiv~nK~Dl~~~~-~--~-~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPN-WHRDLVRVCGNIPIVLCGNKVDIKDRK-V--K-AKQITFHRKKN--LQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEEchhccccc-C--C-HHHHHHHHHcC--CEEEEEeCCCCCChHHHHHH
Confidence 9999999999986 999998876689999999999997332 2 1 22233444332 36999999999999999999
Q ss_pred HHHHHcC
Q 010548 171 AQKAVLH 177 (507)
Q Consensus 171 i~~~i~~ 177 (507)
|.+.+..
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9988754
No 50
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.93 E-value=7.1e-25 Score=198.22 Aligned_cols=159 Identities=23% Similarity=0.272 Sum_probs=127.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-e-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-T-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+||+++|++|||||||+++++++.+...+.++... . .....+....+.+++|||+|++.+..+...+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999887665443321 1 122344456789999999999988888889999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcC------CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLE------IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~------~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 164 (507)
|++++.+++.+.. |...+.+.. .+.|+++|+||+|+...... ..+....++...+ .+++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDS-WLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAV--SEDEGRLWAESKG--FKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhccccccCCCceEEEEEEchhccccccc--CHHHHHHHHHHcC--CeEEEEECCCCCCH
Confidence 9999999999876 988887653 36899999999999754333 3344555666665 36999999999999
Q ss_pred hHHHHHHHHHHc
Q 010548 165 PDVFYYAQKAVL 176 (507)
Q Consensus 165 ~~l~~~i~~~i~ 176 (507)
+++|+.|.+.++
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 51
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.93 E-value=8.9e-25 Score=197.05 Aligned_cols=159 Identities=18% Similarity=0.280 Sum_probs=128.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
.+||+++|++|||||||++++++..+...+.++... .+....+....+.+.+|||||++++..++..+++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 489999999999999999999998876665544332 2233344455678999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
|++++.+++.+.. |...+.+. ..+.|+++|+||+|+...... ..+....+++.++. +++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQRKV--SREEGQELARKLKI--PYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCcccccccee--cHHHHHHHHHHcCC--cEEEeeCCCCCCHHHHH
Confidence 9999999999986 77776653 347899999999999765544 23345566666653 79999999999999999
Q ss_pred HHHHHHH
Q 010548 169 YYAQKAV 175 (507)
Q Consensus 169 ~~i~~~i 175 (507)
+.|.+.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998753
No 52
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.6e-25 Score=196.89 Aligned_cols=165 Identities=19% Similarity=0.214 Sum_probs=142.0
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC--CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCC
Q 010548 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (507)
Q Consensus 7 ~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (507)
......+||+++|+++||||-|+.|+..+.|.....+++. -.|....++.+.++.+||||+|+++|+.....|+++|.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 3456689999999999999999999999998766433222 23456677788899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548 85 AVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (507)
Q Consensus 85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 163 (507)
++++|||++.+.||+++.. |+.+++.+. +++++++||||+||...+.+ ..++...+++..+- .++++||..+.|
T Consensus 89 GAllVYDITr~~Tfenv~r-WL~ELRdhad~nivimLvGNK~DL~~lraV--~te~~k~~Ae~~~l--~f~EtSAl~~tN 163 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVER-WLKELRDHADSNIVIMLVGNKSDLNHLRAV--PTEDGKAFAEKEGL--FFLETSALDATN 163 (222)
T ss_pred eeEEEEechhHHHHHHHHH-HHHHHHhcCCCCeEEEEeecchhhhhcccc--chhhhHhHHHhcCc--eEEEeccccccc
Confidence 9999999999999999986 999999885 68999999999999987776 55667778877764 689999999999
Q ss_pred chHHHHHHHHHHc
Q 010548 164 VPDVFYYAQKAVL 176 (507)
Q Consensus 164 i~~l~~~i~~~i~ 176 (507)
+++.|+.++..+.
T Consensus 164 Ve~aF~~~l~~I~ 176 (222)
T KOG0087|consen 164 VEKAFERVLTEIY 176 (222)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887664
No 53
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.93 E-value=6.7e-25 Score=202.65 Aligned_cols=164 Identities=26% Similarity=0.384 Sum_probs=131.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCccc-CCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+||+|+|++|||||||+++|.++.+...+.++. ..+....... ...+.+.+|||+|++++......+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999998876644432 2222222332 45678999999999999888889999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC---ccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN---ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
|++++.|++.+...|+..+....+++|+++|+||+|+..... . ........++..++.. ++++|||++|.||+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-v~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRK-VTPAQAESVAKKQGAF-AYLECSAKTMENVEEV 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCC-cCHHHHHHHHHHcCCc-EEEEccCCCCCCHHHH
Confidence 999999999997669888877666899999999999965421 1 2344566677776642 6899999999999999
Q ss_pred HHHHHHHHcCC
Q 010548 168 FYYAQKAVLHP 178 (507)
Q Consensus 168 ~~~i~~~i~~~ 178 (507)
|+.+.+.+...
T Consensus 159 f~~l~~~~~~~ 169 (187)
T cd04132 159 FDTAIEEALKK 169 (187)
T ss_pred HHHHHHHHHhh
Confidence 99999887644
No 54
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.93 E-value=9.9e-25 Score=196.03 Aligned_cols=158 Identities=20% Similarity=0.326 Sum_probs=125.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
.+||+++|++|||||||+++|+++.+...+.++... ......+....+.+.+|||+|++++..++..+++.+|++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 379999999999999999999998886665544332 2233344455677899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
|++++.+++.+.. |...+.+. ..++|+++|+||+|+... .. .......+++.++. +++++||++|.|++++|
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~-~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~ 154 (162)
T cd04138 81 AINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAAR-TV--SSRQGQDLAKSYGI--PYIETSAKTRQGVEEAF 154 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-ee--cHHHHHHHHHHhCC--eEEEecCCCCCCHHHHH
Confidence 9999999999876 77776654 247899999999999763 22 23445556666653 69999999999999999
Q ss_pred HHHHHHH
Q 010548 169 YYAQKAV 175 (507)
Q Consensus 169 ~~i~~~i 175 (507)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04138 155 YTLVREI 161 (162)
T ss_pred HHHHHHh
Confidence 9998653
No 55
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.93 E-value=7.4e-25 Score=201.27 Aligned_cols=161 Identities=19% Similarity=0.284 Sum_probs=127.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+||+++|++|||||||+++++++.|...+.++.. ... ....+....+.+.+|||+|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999998776555443 221 23344455688999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCC---ccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHN---ATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
|++++.|++++.. |+..+++..+ ..| |+||||+|+..... .....+....+++.++ .++++|||++|.|+++
T Consensus 81 D~t~~~s~~~i~~-~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~e~SAk~g~~v~~ 156 (182)
T cd04128 81 DLTRKSTLNSIKE-WYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK--APLIFCSTSHSINVQK 156 (182)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC--CEEEEEeCCCCCCHHH
Confidence 9999999999986 9998877543 456 68999999963211 0012344556676666 3799999999999999
Q ss_pred HHHHHHHHHcC
Q 010548 167 VFYYAQKAVLH 177 (507)
Q Consensus 167 l~~~i~~~i~~ 177 (507)
+|+++.+.+..
T Consensus 157 lf~~l~~~l~~ 167 (182)
T cd04128 157 IFKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHHh
Confidence 99999987753
No 56
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.93 E-value=9.7e-25 Score=196.95 Aligned_cols=158 Identities=20% Similarity=0.337 Sum_probs=127.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D 91 (507)
+||+|+|++|||||||++++++..+...+.++... ......+....+.+.+|||||++++..++..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999998887665443332 22333444556889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548 92 CNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
++++.+++.+.. |...+.+. ..++|+++|+||+|+...+.. ..+....+++.++ .++++|||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESERVV--STEEGKELARQWG--CPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceE--cHHHHHHHHHHcC--CEEEEeecCCCCCHHHHHH
Confidence 999999999886 77766543 236899999999999765444 3344556666665 3799999999999999999
Q ss_pred HHHHHH
Q 010548 170 YAQKAV 175 (507)
Q Consensus 170 ~i~~~i 175 (507)
+|.+.+
T Consensus 156 ~l~~~~ 161 (164)
T smart00173 156 DLVREI 161 (164)
T ss_pred HHHHHH
Confidence 998765
No 57
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.93 E-value=1e-24 Score=198.34 Aligned_cols=160 Identities=17% Similarity=0.237 Sum_probs=127.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D 91 (507)
||+++|++|||||||+++++++.|...+.++.. .+. ....+....+.+++|||+|++++..+...+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 899999999999999999999998777655433 221 223344556789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhc-CC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548 92 CNQQSTLSRLSSYWLPELRRL-EI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~-~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
++++.++..+.. |++.+.+. .+ +.|+++|+||+|+.........++....++.+++. +++++||++|.|++++|+
T Consensus 82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~e~Sa~~g~~v~~lf~ 158 (170)
T cd04108 82 LTDVASLEHTRQ-WLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA--EYWSVSALSGENVREFFF 158 (170)
T ss_pred CcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC--eEEEEECCCCCCHHHHHH
Confidence 999999999986 99887553 22 47899999999996553321234455666676663 689999999999999999
Q ss_pred HHHHHHc
Q 010548 170 YAQKAVL 176 (507)
Q Consensus 170 ~i~~~i~ 176 (507)
.|.+.+.
T Consensus 159 ~l~~~~~ 165 (170)
T cd04108 159 RVAALTF 165 (170)
T ss_pred HHHHHHH
Confidence 9988763
No 58
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.93 E-value=9e-25 Score=196.68 Aligned_cols=157 Identities=17% Similarity=0.263 Sum_probs=127.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCccc--CCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY--PDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
+||+++|++|||||||+++++++.+...+.++..... ....+. ...+.+.+|||||++.+......+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999887665443222111 112222 456889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
|||++++++++.+.. |...+.....++|+++|+||+|+.....+ ..++...+++.++. +++++||++|.|++++|
T Consensus 81 v~d~~~~~s~~~l~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~l~ 155 (162)
T cd04106 81 VFSTTDRESFEAIES-WKEKVEAECGDIPMVLVQTKIDLLDQAVI--TNEEAEALAKRLQL--PLFRTSVKDDFNVTELF 155 (162)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEEChhcccccCC--CHHHHHHHHHHcCC--eEEEEECCCCCCHHHHH
Confidence 999999999999886 99888877778999999999999776554 23455666777663 79999999999999999
Q ss_pred HHHHHH
Q 010548 169 YYAQKA 174 (507)
Q Consensus 169 ~~i~~~ 174 (507)
++|...
T Consensus 156 ~~l~~~ 161 (162)
T cd04106 156 EYLAEK 161 (162)
T ss_pred HHHHHh
Confidence 998753
No 59
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.93 E-value=1.4e-24 Score=202.50 Aligned_cols=163 Identities=20% Similarity=0.249 Sum_probs=132.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
..+||+|+|++|||||||+++|.+..+...+.++.. .+. ....+....+.+.+|||||++.+..+...+++.+|++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 468999999999999999999999887655444322 111 222333456789999999999999899999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
|||++++.+++.+.. |+..++......|+++|+||+|+...... ..+....++..++ .+++++||++|.||+++|
T Consensus 85 v~D~~~~~s~~~~~~-~~~~i~~~~~~~piivVgNK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~gi~~lf 159 (199)
T cd04110 85 VYDVTNGESFVNVKR-WLQEIEQNCDDVCKVLVGNKNDDPERKVV--ETEDAYKFAGQMG--ISLFETSAKENINVEEMF 159 (199)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEECCCCcCHHHHH
Confidence 999999999999986 99998887778999999999999765444 3344556666665 379999999999999999
Q ss_pred HHHHHHHcCC
Q 010548 169 YYAQKAVLHP 178 (507)
Q Consensus 169 ~~i~~~i~~~ 178 (507)
++|.+.++..
T Consensus 160 ~~l~~~~~~~ 169 (199)
T cd04110 160 NCITELVLRA 169 (199)
T ss_pred HHHHHHHHHh
Confidence 9999988643
No 60
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.93 E-value=1.1e-24 Score=198.71 Aligned_cols=162 Identities=23% Similarity=0.354 Sum_probs=129.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D 91 (507)
+||+++|++|||||||++++.++.+...+.++.. .......+....+.+.+|||+|++.+......+++.+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 5899999999999999999999988665444332 222333444556788999999999988888889999999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc----------cchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSATTM 161 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~SA~~g 161 (507)
++++.+++.+...|.+.++...+++|+++|+||+|+.+.... ....+....+++.++.. ++++|||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAH-CYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCC-EEEEecCCcC
Confidence 999999999977799988876678999999999998654210 01234456677777643 6999999999
Q ss_pred CCchHHHHHHHHHH
Q 010548 162 IQVPDVFYYAQKAV 175 (507)
Q Consensus 162 ~gi~~l~~~i~~~i 175 (507)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
No 61
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=1.8e-24 Score=195.63 Aligned_cols=160 Identities=17% Similarity=0.276 Sum_probs=127.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-e-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-T-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
..+||+++|++|||||||++++..+.+...+.++... . .....+....+.+.+|||||++.+......+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999988876654443321 1 1223334445789999999999888888999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.. ..+....+++.++. ..++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~ 157 (165)
T cd01864 82 AYDITRRSSFESVPH-WIEEVEKYGASNVVLLLIGNKCDLEEQREV--LFEEACTLAEKNGM-LAVLETSAKESQNVEEA 157 (165)
T ss_pred EEECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCC-cEEEEEECCCCCCHHHH
Confidence 999999999999876 988887643 47999999999999866544 33445666666654 36899999999999999
Q ss_pred HHHHHHH
Q 010548 168 FYYAQKA 174 (507)
Q Consensus 168 ~~~i~~~ 174 (507)
|+.+.+.
T Consensus 158 ~~~l~~~ 164 (165)
T cd01864 158 FLLMATE 164 (165)
T ss_pred HHHHHHh
Confidence 9998764
No 62
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.92 E-value=1.5e-24 Score=204.85 Aligned_cols=161 Identities=20% Similarity=0.227 Sum_probs=130.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccC-CceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
+||+++|++|||||||+++|++..|...+.++.. .. .....+.. ..+.+.||||+|++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999888766554332 21 12223322 368999999999998899999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhcC----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 90 YACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~~----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
||++++.|++.+.. |...+.+.. .+.|+++|+||+|+...+.+ ..+....+++.++. ++++|||++|.||+
T Consensus 81 ~D~t~~~s~~~~~~-w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~~~~~--~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLED-WYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV--KDDKHARFAQANGM--ESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhccccCCCceEEEEEECccccccccc--CHHHHHHHHHHcCC--EEEEEECCCCCCHH
Confidence 99999999999986 999887753 24689999999999765554 34456677777763 68999999999999
Q ss_pred HHHHHHHHHHcCC
Q 010548 166 DVFYYAQKAVLHP 178 (507)
Q Consensus 166 ~l~~~i~~~i~~~ 178 (507)
++|++|.+.+...
T Consensus 156 ~lf~~l~~~l~~~ 168 (215)
T cd04109 156 LLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987643
No 63
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.92 E-value=2.2e-24 Score=194.88 Aligned_cols=159 Identities=20% Similarity=0.260 Sum_probs=127.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+||+++|++|||||||++++.++.+.....++.. .. +....+....+.+.+|||||++.+..+...+++.++++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999999887655433222 21 22333444557899999999998888899999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
||++++.++..+.. |+..++.... ++|+++|+||+|+...+.. ..+....++...+ .++++|||++|.|++++|
T Consensus 83 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 83 YDITKKQTFENVER-WLKELRDHADSNIVIMLVGNKSDLRHLRAV--PTEEAKAFAEKNG--LSFIETSALDGTNVEEAF 157 (165)
T ss_pred EECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECccccccccC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence 99999999999986 9988877654 5999999999999775544 2334555555544 369999999999999999
Q ss_pred HHHHHHH
Q 010548 169 YYAQKAV 175 (507)
Q Consensus 169 ~~i~~~i 175 (507)
+.|.+.+
T Consensus 158 ~~l~~~i 164 (165)
T cd01868 158 KQLLTEI 164 (165)
T ss_pred HHHHHHh
Confidence 9998764
No 64
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.92 E-value=9.7e-25 Score=196.55 Aligned_cols=158 Identities=25% Similarity=0.389 Sum_probs=135.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC--CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D 91 (507)
||+++|+++||||||+++|.++.|...+.++.. .......+....+.+.+||++|++.+..+....++.+|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999998777655442 222444555677899999999999998888899999999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHH
Q 010548 92 CNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 170 (507)
++++.|++.+.. |++.+....+ +.|++|||||+|+...+.+ ..+++..++++++ .+|++|||+++.||.++|..
T Consensus 81 ~~~~~S~~~~~~-~~~~i~~~~~~~~~iivvg~K~D~~~~~~v--~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 81 VTDEESFENLKK-WLEEIQKYKPEDIPIIVVGNKSDLSDEREV--SVEEAQEFAKELG--VPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp TTBHHHHHTHHH-HHHHHHHHSTTTSEEEEEEETTTGGGGSSS--CHHHHHHHHHHTT--SEEEEEBTTTTTTHHHHHHH
T ss_pred cccccccccccc-ccccccccccccccceeeeccccccccccc--hhhHHHHHHHHhC--CEEEEEECCCCCCHHHHHHH
Confidence 999999999995 9999998876 6999999999999876655 3456788888888 38999999999999999999
Q ss_pred HHHHHc
Q 010548 171 AQKAVL 176 (507)
Q Consensus 171 i~~~i~ 176 (507)
+++.++
T Consensus 156 ~i~~i~ 161 (162)
T PF00071_consen 156 LIRKIL 161 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 65
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=2.1e-24 Score=200.08 Aligned_cols=161 Identities=21% Similarity=0.316 Sum_probs=129.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
+||+++|++|||||||++++.+..+.. .+.++.. ... ....+....+.+.||||||++.+......+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988754 3333222 222 1234445568899999999998888888999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
||++++.+++++.. |+..+....+ ++|+++|+||+|+...+.+ ..+....+...++. +++++||++|.|++++|
T Consensus 81 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~--~~~~~~~l~~~~~~--~~~e~Sa~~~~~v~~l~ 155 (191)
T cd04112 81 YDITNKASFDNIRA-WLTEIKEYAQEDVVIMLLGNKADMSGERVV--KREDGERLAKEYGV--PFMETSAKTGLNVELAF 155 (191)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEcccchhcccc--CHHHHHHHHHHcCC--eEEEEeCCCCCCHHHHH
Confidence 99999999999986 9988887653 7899999999999765444 33455666666653 79999999999999999
Q ss_pred HHHHHHHcCC
Q 010548 169 YYAQKAVLHP 178 (507)
Q Consensus 169 ~~i~~~i~~~ 178 (507)
++|.+.+...
T Consensus 156 ~~l~~~~~~~ 165 (191)
T cd04112 156 TAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHh
Confidence 9999887544
No 66
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.92 E-value=2.8e-24 Score=199.95 Aligned_cols=163 Identities=19% Similarity=0.240 Sum_probs=121.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchh--------hhHHhhcc
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKG--------KLNEELKR 82 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ 82 (507)
+||+|+|++|||||||+++++++.|...+.++.. ... ....+....+.+.+|||||...+.. ....+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999988766444332 211 2223444558899999999764322 12345799
Q ss_pred CCEEEEEEeCCChhhHHHHHHhHHHHHHhc----CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (507)
Q Consensus 83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~----~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (507)
+|++|+|||++++.|++.+.. |...+.+. ..++|+++|+||+|+...+.+ ..+....++.+... +++++|||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA--PRHVLSVLVRKSWK-CGYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECccccccccc--cHHHHHHHHHHhcC-CcEEEecC
Confidence 999999999999999999886 87776653 357999999999999765444 23344455433222 37999999
Q ss_pred ccCCCchHHHHHHHHHHcCCC
Q 010548 159 TTMIQVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 159 ~~g~gi~~l~~~i~~~i~~~~ 179 (507)
++|.||+++|+.+++.+....
T Consensus 157 k~g~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 157 KYNWHILLLFKELLISATTRG 177 (198)
T ss_pred CCCCCHHHHHHHHHHHhhccC
Confidence 999999999999998876554
No 67
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.92 E-value=1.6e-24 Score=197.57 Aligned_cols=158 Identities=26% Similarity=0.369 Sum_probs=128.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D 91 (507)
+||+++|++|||||||++++.++.|...+.++.. .......+....+.+.+|||||++++..++..+++.+|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 5899999999999999999999888777655432 222334444556889999999999998888889999999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
++++.+++.+...|+..++...++.|+++|+||+|+... +.+ ..+....+++.++. .++++|||+
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~a~~~~~-~~~~e~Sa~ 157 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPV--SQSRAKALAEKIGA-CEYIECSAL 157 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCc--CHHHHHHHHHHhCC-CeEEEEeCC
Confidence 999999999876699888876568999999999998643 222 33456667776653 379999999
Q ss_pred cCCCchHHHHHHHH
Q 010548 160 TMIQVPDVFYYAQK 173 (507)
Q Consensus 160 ~g~gi~~l~~~i~~ 173 (507)
+|.||+++|+.++-
T Consensus 158 ~~~~v~~lf~~~~~ 171 (173)
T cd04130 158 TQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999998764
No 68
>PLN03110 Rab GTPase; Provisional
Probab=99.92 E-value=3.3e-24 Score=202.56 Aligned_cols=172 Identities=20% Similarity=0.241 Sum_probs=136.5
Q ss_pred CCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHH
Q 010548 1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNE 78 (507)
Q Consensus 1 m~~m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 78 (507)
|.-+........+||+++|++|||||||+++|++..+...+.++.. .. .....+....+.+.+|||+|++++..+...
T Consensus 1 ~~~~~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~ 80 (216)
T PLN03110 1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA 80 (216)
T ss_pred CCCCcccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHH
Confidence 3344444455679999999999999999999999887655433222 22 133344455689999999999999999999
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (507)
Q Consensus 79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (507)
+++.++++|+|||++++.+++.+.. |+..++... .+.|+++|+||+|+...+.+ ..+....++..++. +++++|
T Consensus 81 ~~~~~~~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~--~~~~~~~l~~~~~~--~~~e~S 155 (216)
T PLN03110 81 YYRGAVGALLVYDITKRQTFDNVQR-WLRELRDHADSNIVIMMAGNKSDLNHLRSV--AEEDGQALAEKEGL--SFLETS 155 (216)
T ss_pred HhCCCCEEEEEEECCChHHHHHHHH-HHHHHHHhCCCCCeEEEEEEChhcccccCC--CHHHHHHHHHHcCC--EEEEEe
Confidence 9999999999999999999999886 998887754 37999999999999766554 33455666666653 799999
Q ss_pred cccCCCchHHHHHHHHHHcC
Q 010548 158 ATTMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 158 A~~g~gi~~l~~~i~~~i~~ 177 (507)
|++|.|++++|+.|.+.+..
T Consensus 156 A~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 156 ALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 69
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.92 E-value=3.5e-24 Score=194.37 Aligned_cols=160 Identities=20% Similarity=0.272 Sum_probs=128.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+||+|+|++|||||||++++++..+.....++.. .. +....+......+.+|||+|.+++......+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999887555443222 11 12233445567899999999998888888999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
||++++.+++.+.. |+..+++. .+++|+++|+||+|+...... ..+....++...+. +++++||+++.|++++|
T Consensus 84 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 84 YDITRRETFNHLTS-WLEDARQHSNSNMTIMLIGNKCDLESRREV--SYEEGEAFAKEHGL--IFMETSAKTASNVEEAF 158 (168)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccccccCC--CHHHHHHHHHHcCC--EEEEEeCCCCCCHHHHH
Confidence 99999999999986 99888764 357999999999999865444 23445556666653 69999999999999999
Q ss_pred HHHHHHHc
Q 010548 169 YYAQKAVL 176 (507)
Q Consensus 169 ~~i~~~i~ 176 (507)
..+.+.+.
T Consensus 159 ~~~~~~~~ 166 (168)
T cd01866 159 INTAKEIY 166 (168)
T ss_pred HHHHHHHH
Confidence 99988764
No 70
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=2.9e-25 Score=187.12 Aligned_cols=164 Identities=15% Similarity=0.256 Sum_probs=139.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP--TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
..-.+||+++|..-||||||+-|++.++|.....++... .+....+......+.||||+|+++|..+-+.|+++++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 445799999999999999999999999987664332211 123445556678899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
++|||+++++||+.++. |..+++... ..+-+++||||+||..++.+ ..++.+.++...|. .|+++||+.+.||.
T Consensus 90 lLVyDITDrdSFqKVKn-WV~Elr~mlGnei~l~IVGNKiDLEeeR~V--t~qeAe~YAesvGA--~y~eTSAk~N~Gi~ 164 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKN-WVLELRTMLGNEIELLIVGNKIDLEEERQV--TRQEAEAYAESVGA--LYMETSAKDNVGIS 164 (218)
T ss_pred EEEEeccchHHHHHHHH-HHHHHHHHhCCeeEEEEecCcccHHHhhhh--hHHHHHHHHHhhch--hheecccccccCHH
Confidence 99999999999999997 999998863 35888999999999998887 55677888888886 59999999999999
Q ss_pred HHHHHHHHHHcC
Q 010548 166 DVFYYAQKAVLH 177 (507)
Q Consensus 166 ~l~~~i~~~i~~ 177 (507)
++|+.+....+.
T Consensus 165 elFe~Lt~~MiE 176 (218)
T KOG0088|consen 165 ELFESLTAKMIE 176 (218)
T ss_pred HHHHHHHHHHHH
Confidence 999999877643
No 71
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.92 E-value=4.5e-24 Score=204.83 Aligned_cols=164 Identities=15% Similarity=0.212 Sum_probs=127.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D 91 (507)
+||+++|++|||||||+++++++.|...+.++.... .....+....+.+.||||+|.+.+..+...++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 589999999999999999999998877665544332 2233444556889999999998888888888999999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhc----------CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548 92 CNQQSTLSRLSSYWLPELRRL----------EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~----------~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 161 (507)
++++.||+.+.. |...+... ..++|+|+|+||+|+...+.+ .. +++..+..... ...+++|||++|
T Consensus 81 v~~~~Sf~~i~~-~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v-~~-~ei~~~~~~~~-~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCR-LREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV-QR-DEVEQLVGGDE-NCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHH-HHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc-CH-HHHHHHHHhcC-CCEEEEEeCCCC
Confidence 999999999986 87777542 247999999999999765444 22 33334333221 236999999999
Q ss_pred CCchHHHHHHHHHHcCCCC
Q 010548 162 IQVPDVFYYAQKAVLHPTA 180 (507)
Q Consensus 162 ~gi~~l~~~i~~~i~~~~~ 180 (507)
.||+++|++|.+.+..+..
T Consensus 157 ~gI~elf~~L~~~~~~p~e 175 (247)
T cd04143 157 SNLDEMFRALFSLAKLPNE 175 (247)
T ss_pred CCHHHHHHHHHHHhccccc
Confidence 9999999999997755543
No 72
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.92 E-value=7.3e-24 Score=200.74 Aligned_cols=184 Identities=21% Similarity=0.236 Sum_probs=135.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCC--CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhc-cCCEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHA--PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK-RADAVVL 88 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~~--~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-~ad~il~ 88 (507)
+||+++|++|||||||+++|+.+.+. ..+.++.. .......+......+.+|||+|++ ......+++ .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999988875 44444432 222334455567889999999987 223345666 9999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
|||++++.+++.+.. |+..+.... .++|+|+|+||+|+...+.+ . .+....++..++. ++++|||++|.||++
T Consensus 79 V~d~td~~S~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v-~-~~~~~~~a~~~~~--~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASE-LRIQLRRNRQLEDRPIILVGNKSDLARSREV-S-VQEGRACAVVFDC--KFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhcccccee-c-HHHHHHHHHHcCC--eEEEecCCCCCCHHH
Confidence 999999999999886 888887653 47999999999999776555 2 3334566666653 699999999999999
Q ss_pred HHHHHHHHHcCCC------C---C-CCccchhcccHHHHHHHHHHHh
Q 010548 167 VFYYAQKAVLHPT------A---P-LFDHDEQTLKPRCVRALKRIFI 203 (507)
Q Consensus 167 l~~~i~~~i~~~~------~---~-~~~~~~~~~~~~~~~~l~~~~~ 203 (507)
+|++|.+.+.... . + ....+.......+.+.|.++..
T Consensus 154 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~l~~~~~ 200 (221)
T cd04148 154 LLEGIVRQIRLRRDSKEKNERRSRRAYRGRRESLTSKAKRFLGKLVA 200 (221)
T ss_pred HHHHHHHHHHhhhccccccCccccccccCccchHHHHHHHHHHHHhc
Confidence 9999998874221 1 1 1222333455666666666554
No 73
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.92 E-value=4e-24 Score=194.26 Aligned_cols=159 Identities=21% Similarity=0.264 Sum_probs=126.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT--RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
..+||+++|++|||||||+++++++.+.....++.... .....+....+.+.+|||||++++..++..+++.+|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 46899999999999999999999988866543322211 1233445667889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcC-----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 163 (507)
|||++++.+++.+.. |...+.... .+.|+++|+||+|+.. +.. ..+....++.+++. .+++++||++|.|
T Consensus 84 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~--~~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 158 (170)
T cd04116 84 TFAVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVVLGNKNDIPE-RQV--STEEAQAWCRENGD-YPYFETSAKDATN 158 (170)
T ss_pred EEECCCHHHHHhHHH-HHHHHHHhcccccCCCCcEEEEEECccccc-ccc--CHHHHHHHHHHCCC-CeEEEEECCCCCC
Confidence 999999999999876 887765432 3689999999999863 232 34456677777763 3789999999999
Q ss_pred chHHHHHHHHH
Q 010548 164 VPDVFYYAQKA 174 (507)
Q Consensus 164 i~~l~~~i~~~ 174 (507)
+.++|+.+++.
T Consensus 159 v~~~~~~~~~~ 169 (170)
T cd04116 159 VAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999998864
No 74
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.92 E-value=4.1e-24 Score=192.30 Aligned_cols=157 Identities=21% Similarity=0.273 Sum_probs=126.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-e-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-T-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+||+|+|++|||||||+++|++..+.....+.... + +....+....+.+.+|||||++.+......+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999998876554433221 1 123344455688999999999988888899999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
|++++.++..+.. |+..++.. .+++|+++|+||+|+...... ..+....++..++ .+++++||+++.|++++|+
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~ 155 (161)
T cd04113 81 DITNRTSFEALPT-WLSDARALASPNIVVILVGNKSDLADQREV--TFLEASRFAQENG--LLFLETSALTGENVEEAFL 155 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEEchhcchhccC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHHH
Confidence 9999999999886 88887654 358999999999999765444 3444566666666 3799999999999999999
Q ss_pred HHHHH
Q 010548 170 YAQKA 174 (507)
Q Consensus 170 ~i~~~ 174 (507)
++.+.
T Consensus 156 ~~~~~ 160 (161)
T cd04113 156 KCARS 160 (161)
T ss_pred HHHHh
Confidence 99874
No 75
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.92 E-value=5.1e-24 Score=194.43 Aligned_cols=162 Identities=24% Similarity=0.382 Sum_probs=127.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D 91 (507)
.||+|+|++|||||||++++.++.+...+.++.. .......+....+.+.+|||+|++.+......+++.+|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 6899999999999999999999988766544332 222333445556789999999999888888788999999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc----------cchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSATTM 161 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~SA~~g 161 (507)
++++.+++.+...|...+++..+++|+++|+||+|+...... .........++..++.. ++++|||++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa~~~ 160 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAF-GYMECSAKTK 160 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCc-EEEEeccccC
Confidence 999999999977799888876668999999999998653210 01123445556555532 6999999999
Q ss_pred CCchHHHHHHHHHH
Q 010548 162 IQVPDVFYYAQKAV 175 (507)
Q Consensus 162 ~gi~~l~~~i~~~i 175 (507)
.|++++|++|.+.+
T Consensus 161 ~~v~~lf~~l~~~~ 174 (175)
T cd01870 161 EGVREVFEMATRAA 174 (175)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998764
No 76
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.92 E-value=6e-24 Score=191.76 Aligned_cols=158 Identities=16% Similarity=0.253 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCC-Cee-eCCcc-cCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATE--SVPEKVPPVHA-PTR-LPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~--~~~~~~~~~~~-~~t-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
+||+++|++|||||||++++... .+...+.++.. .+. ....+ ....+.+.+|||||++.+..+...+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 55555444332 221 11222 245689999999999888888999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
+|||++++.++..+.. |+..+.....++|+++|+||+|+.+...+ .......+...++ .++++|||++|.|++++
T Consensus 81 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l 155 (164)
T cd04101 81 LVYDVSNKASFENCSR-WVNKVRTASKHMPGVLVGNKMDLADKAEV--TDAQAQAFAQANQ--LKFFKTSALRGVGYEEP 155 (164)
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECcccccccCC--CHHHHHHHHHHcC--CeEEEEeCCCCCChHHH
Confidence 9999999999998875 99888876567999999999999765544 2223344555554 36899999999999999
Q ss_pred HHHHHHHH
Q 010548 168 FYYAQKAV 175 (507)
Q Consensus 168 ~~~i~~~i 175 (507)
|+.+.+.+
T Consensus 156 ~~~l~~~~ 163 (164)
T cd04101 156 FESLARAF 163 (164)
T ss_pred HHHHHHHh
Confidence 99998764
No 77
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=5.8e-24 Score=196.65 Aligned_cols=160 Identities=21% Similarity=0.296 Sum_probs=128.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+||+++|++|||||||+++|.++.+...+.++..... ....+....+.+.+|||+|.+.+...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999988664444332211 22344455688999999999988888999999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
|++++.++..+.. |+..++... .+.|+++|+||+|+.+...+ ..+....++...+. +++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~i~~-~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKF-WINEINRYARENVIKVIVANKSDLVNNKVV--DSNIAKSFCDSLNI--PFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECCCCcccccC--CHHHHHHHHHHcCC--eEEEEeCCCCCCHHHHHH
Confidence 9999999999987 999887753 36899999999999865544 23344555555543 699999999999999999
Q ss_pred HHHHHHcC
Q 010548 170 YAQKAVLH 177 (507)
Q Consensus 170 ~i~~~i~~ 177 (507)
++.+.+..
T Consensus 156 ~l~~~~~~ 163 (188)
T cd04125 156 LLVKLIIK 163 (188)
T ss_pred HHHHHHHH
Confidence 99988754
No 78
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=5.4e-24 Score=193.36 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=127.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCC-CCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVH-APTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~-~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
++.+||+++|++|||||||+++++++.|. ..+.++. .... ....+....+.+.+||++|.+.+..+...+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999987 5554433 2222 2234445567899999999998888888999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
++|||++++.+++.+.. |+..+... .++|+++|+||+|+.+.... .......+++.++.. .++++||++|.|+++
T Consensus 82 llv~d~~~~~s~~~~~~-~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~ 156 (169)
T cd01892 82 CLVYDSSDPKSFSYCAE-VYKKYFML-GEIPCLFVAAKADLDEQQQR--YEVQPDEFCRKLGLP-PPLHFSSKLGDSSNE 156 (169)
T ss_pred EEEEeCCCHHHHHHHHH-HHHHhccC-CCCeEEEEEEcccccccccc--cccCHHHHHHHcCCC-CCEEEEeccCccHHH
Confidence 99999999999998875 77766432 37999999999999654332 122345556666532 469999999999999
Q ss_pred HHHHHHHHHcC
Q 010548 167 VFYYAQKAVLH 177 (507)
Q Consensus 167 l~~~i~~~i~~ 177 (507)
+|+.+.+.+..
T Consensus 157 lf~~l~~~~~~ 167 (169)
T cd01892 157 LFTKLATAAQY 167 (169)
T ss_pred HHHHHHHHhhC
Confidence 99999987754
No 79
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.92 E-value=2.6e-24 Score=195.22 Aligned_cols=157 Identities=9% Similarity=0.069 Sum_probs=115.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
++.+||+++|++|||||||+++|..+.+....++...... .+...++.+.+|||||++.+...+..+++.+|++|+|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~---~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE---TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceE---EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 3568999999999999999999998776433333222211 2224578999999999999988889999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHH--H-hcccCcEEEeCcccCCCch
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ--Q-FREIETCVECSATTMIQVP 165 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~SA~~g~gi~ 165 (507)
||++++.+++.+...|...+... .+++|++||+||+|+..... .+++..... . .....++++|||++|.|++
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMK----PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCC----HHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 99999999998877444444432 34799999999999865321 122222221 1 1111257999999999999
Q ss_pred HHHHHHHH
Q 010548 166 DVFYYAQK 173 (507)
Q Consensus 166 ~l~~~i~~ 173 (507)
++|++|.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999864
No 80
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=7e-24 Score=199.45 Aligned_cols=160 Identities=20% Similarity=0.275 Sum_probs=128.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcc-cCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
.+||+|+|++|||||||+++|++..+.....++.. ... ....+ ....+.+.+|||+|++.+..+...+++.+|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 48999999999999999999999887665443222 111 11222 2345789999999999998888899999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
|||++++.|++.+.. |+..+.+.. ...|+++|+||+|+.....+ ..+....+++.++ .++++|||++|.||++
T Consensus 82 v~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQRQV--TREEAEKLAKDLG--MKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEcccccccccc--CHHHHHHHHHHhC--CEEEEEeCCCCCCHHH
Confidence 999999999999986 888876542 25788999999999875554 3445677777776 3799999999999999
Q ss_pred HHHHHHHHHc
Q 010548 167 VFYYAQKAVL 176 (507)
Q Consensus 167 l~~~i~~~i~ 176 (507)
+|+.|.+.+.
T Consensus 157 ~f~~l~~~~~ 166 (211)
T cd04111 157 AFELLTQEIY 166 (211)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 81
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.92 E-value=4.7e-24 Score=198.23 Aligned_cols=154 Identities=16% Similarity=0.273 Sum_probs=124.9
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCCh
Q 010548 18 VGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQ 95 (507)
Q Consensus 18 vG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~ 95 (507)
+|++|||||||+++++.+.|...+.++.. .. +....++...+++.||||+|++.+..++..+++.+|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998888666554432 11 23334455678999999999999999999999999999999999999
Q ss_pred hhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548 96 STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 96 ~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i 175 (507)
.|++.+.. |+..+++..+++|+++||||+|+... .+ . .+. ..+++..+ .+|++|||++|.||.++|++|++.+
T Consensus 81 ~S~~~i~~-w~~~i~~~~~~~piilvgNK~Dl~~~-~v-~-~~~-~~~~~~~~--~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPN-WHRDLVRVCENIPIVLCGNKVDVKDR-KV-K-AKS-ITFHRKKN--LQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHH-HHHHHHHhCCCCCEEEEEECcccccc-cC-C-HHH-HHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999986 99999887778999999999998643 23 2 222 24555444 3799999999999999999999987
Q ss_pred cCC
Q 010548 176 LHP 178 (507)
Q Consensus 176 ~~~ 178 (507)
...
T Consensus 154 ~~~ 156 (200)
T smart00176 154 IGD 156 (200)
T ss_pred Hhc
Confidence 554
No 82
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.92 E-value=9.3e-24 Score=191.56 Aligned_cols=161 Identities=22% Similarity=0.325 Sum_probs=129.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
.+||+++|++|||||||++++.++.+...+.++.... .....+....+.+.+|||||++.+..+++.+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 3799999999999999999999988866655443322 233344555688999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
|++++.+++.+.. |...+.+. ..++|+++|+||+|+...+.. ..+....+++.++. .+++++||++|.|++++|
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~-~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDDRQV--SREDGVSLSQQWGN-VPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhccccCcc--CHHHHHHHHHHcCC-ceEEEeeCCCCCCHHHHH
Confidence 9999999999986 88877653 347999999999999765544 23345556666653 379999999999999999
Q ss_pred HHHHHHHc
Q 010548 169 YYAQKAVL 176 (507)
Q Consensus 169 ~~i~~~i~ 176 (507)
+++.+.++
T Consensus 157 ~~i~~~~~ 164 (168)
T cd04177 157 IDLVRQII 164 (168)
T ss_pred HHHHHHHh
Confidence 99987653
No 83
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.92 E-value=4.7e-24 Score=192.82 Aligned_cols=157 Identities=23% Similarity=0.322 Sum_probs=123.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCcc-chhhhHHhhccCCEEEEEEe
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLE-NKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad~il~V~D 91 (507)
||+++|++|||||||+++++.+.+...++++.. .......++...+.+.+|||||+.. +......+++.+|++|+|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 689999999999999999998887666554332 2222334455567899999999875 34556788999999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC-CchHH
Q 010548 92 CNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI-QVPDV 167 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~-gi~~l 167 (507)
++++.|++.+.. |...+.... .++|+++|+||+|+...+.+ ..+....+++.++. ++++|||++|. ||+++
T Consensus 81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQ-LKQLIREIKKRDREIPVILVGNKADLLHYRQV--STEEGEKLASELGC--LFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCchHHhCcc--CHHHHHHHHHHcCC--EEEEeCCCCCchhHHHH
Confidence 999999999976 888777643 47999999999998765544 33455667777763 79999999994 99999
Q ss_pred HHHHHHHH
Q 010548 168 FYYAQKAV 175 (507)
Q Consensus 168 ~~~i~~~i 175 (507)
|+.|.+.+
T Consensus 156 f~~l~~~~ 163 (165)
T cd04146 156 FHELCREV 163 (165)
T ss_pred HHHHHHHH
Confidence 99998764
No 84
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.91 E-value=8.4e-25 Score=196.85 Aligned_cols=168 Identities=27% Similarity=0.410 Sum_probs=147.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCccc-CCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
..+|++|||+.+||||+|+..+..+.|... +|+..+++.....++ ...+.+.+|||+|+++|..+++..+..+|+|++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 458999999999999999999999999888 555666777777774 888999999999999999988889999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC-----------CccchhhhhHHHHHHhcccCcEEEeC
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----------NATSLEEVMGPIMQQFREIETCVECS 157 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (507)
||++.++.|++++.++|+++++.++++.|+|+||+|.||..+. .. ...+....++++.|.. .|+|||
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~-Vt~~~g~~lA~~iga~-~y~EcS 160 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEP-VTYEQGLELAKEIGAV-KYLECS 160 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCc-ccHHHHHHHHHHhCcc-eeeeeh
Confidence 9999999999999999999999999999999999999998531 11 2445677888888864 799999
Q ss_pred cccCCCchHHHHHHHHHHcCCCC
Q 010548 158 ATTMIQVPDVFYYAQKAVLHPTA 180 (507)
Q Consensus 158 A~~g~gi~~l~~~i~~~i~~~~~ 180 (507)
|++..|+.++|+..++.++.+..
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhcccc
Confidence 99999999999999999887654
No 85
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.91 E-value=7.2e-24 Score=179.81 Aligned_cols=163 Identities=18% Similarity=0.253 Sum_probs=134.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCccc-CCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (507)
....++++++|++-||||||+..++.++|.+-..++....- .-+++. +..+++++|||+|++++++....|++++-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 34578999999999999999999999998765444221111 111222 447899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcE-EEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548 86 VVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPI-IVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (507)
Q Consensus 86 il~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~pi-ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 162 (507)
+++|||++|+.||+++.. |..+.... +|.+++ .+||+|+|+...+++ ..++.+.++...+. .++|+||++|.
T Consensus 85 vllvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV--t~EEaEklAa~hgM--~FVETSak~g~ 159 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV--TAEEAEKLAASHGM--AFVETSAKNGC 159 (213)
T ss_pred eEEEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhhccc--cHHHHHHHHHhcCc--eEEEecccCCC
Confidence 999999999999999997 99887654 345554 689999999998888 56778999999987 69999999999
Q ss_pred CchHHHHHHHHHHc
Q 010548 163 QVPDVFYYAQKAVL 176 (507)
Q Consensus 163 gi~~l~~~i~~~i~ 176 (507)
||++.|+.|.+.+.
T Consensus 160 NVeEAF~mlaqeIf 173 (213)
T KOG0091|consen 160 NVEEAFDMLAQEIF 173 (213)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999988764
No 86
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.91 E-value=1.5e-23 Score=194.75 Aligned_cols=162 Identities=20% Similarity=0.225 Sum_probs=127.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
+||+|+|++|||||||+++|+++.+.. .+.++..... ....+....+.+.+|||+|++++..+...+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988864 3433332211 2334445567889999999998888888899999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC--ccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN--ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
||++++.+++.+.. |+..++...++.|+++|+||+|+..... .....+....++..++. +++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~-~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~Sa~~~~gv~~l 157 (193)
T cd04118 81 YDLTDSSSFERAKF-WVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKA--QHFETSSKTGQNVDEL 157 (193)
T ss_pred EECCCHHHHHHHHH-HHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCC--eEEEEeCCCCCCHHHH
Confidence 99999999999875 9999887766899999999999864321 10122344555655543 6899999999999999
Q ss_pred HHHHHHHHcC
Q 010548 168 FYYAQKAVLH 177 (507)
Q Consensus 168 ~~~i~~~i~~ 177 (507)
|+.|.+.+..
T Consensus 158 ~~~i~~~~~~ 167 (193)
T cd04118 158 FQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 87
>PLN03118 Rab family protein; Provisional
Probab=99.91 E-value=1.8e-23 Score=197.03 Aligned_cols=166 Identities=21% Similarity=0.314 Sum_probs=129.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
....+||+|+|++|||||||+++|++..+....++...... ....++...+.+.+|||||++.+..++..+++.+|++|
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 44578999999999999999999998876432222222221 22334455688999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
+|||++++.+++.+...|...+.... .+.|+++|+||+|+...... ..+....++...+. ++++|||++|.|++
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i--~~~~~~~~~~~~~~--~~~e~SAk~~~~v~ 166 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDV--SREEGMALAKEHGC--LFLECSAKTRENVE 166 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc--CHHHHHHHHHHcCC--EEEEEeCCCCCCHH
Confidence 99999999999999877877776542 36899999999999765544 23344555555553 68999999999999
Q ss_pred HHHHHHHHHHcCC
Q 010548 166 DVFYYAQKAVLHP 178 (507)
Q Consensus 166 ~l~~~i~~~i~~~ 178 (507)
++|+.|.+.+...
T Consensus 167 ~l~~~l~~~~~~~ 179 (211)
T PLN03118 167 QCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887554
No 88
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.91 E-value=1.9e-23 Score=188.21 Aligned_cols=159 Identities=21% Similarity=0.264 Sum_probs=128.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+||+++|++|||||||+++++++.+.....++.. .. +....+....+.+.+|||||++++......+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999987664333222 12 23445556678999999999988888888899999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
+|++++.++..+.. |+..+.... ++.|+++|+||+|+...... ..+....+....+ .+++++||++|.|+.+++
T Consensus 81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 81 YDITSEESFEKAKS-WVKELQRNASPNIIIALVGNKADLESKRQV--STEEAQEYADENG--LLFFETSAKTGENVNELF 155 (163)
T ss_pred EECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECccccccCcC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence 99999999999886 888877654 57999999999998765443 2334555666665 369999999999999999
Q ss_pred HHHHHHH
Q 010548 169 YYAQKAV 175 (507)
Q Consensus 169 ~~i~~~i 175 (507)
++|.+.+
T Consensus 156 ~~l~~~l 162 (163)
T cd01860 156 TEIAKKL 162 (163)
T ss_pred HHHHHHh
Confidence 9998764
No 89
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.91 E-value=1.9e-23 Score=188.31 Aligned_cols=159 Identities=23% Similarity=0.343 Sum_probs=126.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+||+++|++|||||||++++.+..+.....+.... .. ....+....+.+.+||+||+..+......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988875443332221 11 22333344578999999999988888899999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
|++++.+++.+.. |+..+.... +++|+++|+||+|+...... ..+....+...++. +++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~-~l~~~~~~~~~~~pivvv~nK~D~~~~~~~--~~~~~~~~~~~~~~--~~~e~Sa~~~~~i~~l~~ 155 (164)
T smart00175 81 DITNRESFENLKN-WLKELREYADPNVVIMLVGNKSDLEDQRQV--SREEAEAFAEEHGL--PFFETSAKTNTNVEEAFE 155 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEEchhcccccCC--CHHHHHHHHHHcCC--eEEEEeCCCCCCHHHHHH
Confidence 9999999999886 988877654 57999999999998765443 23445556666653 699999999999999999
Q ss_pred HHHHHHc
Q 010548 170 YAQKAVL 176 (507)
Q Consensus 170 ~i~~~i~ 176 (507)
.|.+.+.
T Consensus 156 ~i~~~~~ 162 (164)
T smart00175 156 ELAREIL 162 (164)
T ss_pred HHHHHHh
Confidence 9988763
No 90
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.91 E-value=1.6e-23 Score=190.38 Aligned_cols=159 Identities=21% Similarity=0.319 Sum_probs=125.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccch-hhhHHhhccCCEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENK-GKLNEELKRADAVVL 88 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~ad~il~ 88 (507)
.+||+++|++|||||||+++++...+.....++.. .. .....+....+.+.+|||+|++.+. .++..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 48999999999999999999998887655433221 11 1223344556899999999998876 467788999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc---CCC
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT---MIQ 163 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~---g~g 163 (507)
|||++++.++..+.. |...+.... .++|+++|+||+|+...+.+ ..+....+++..+ .++++|||++ +.|
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~~~~~ 156 (170)
T cd04115 82 VYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQIQV--PTDLAQRFADAHS--MPLFETSAKDPSENDH 156 (170)
T ss_pred EEECCCHHHHHhHHH-HHHHHHHhcCCCCCCEEEEEECccchhhcCC--CHHHHHHHHHHcC--CcEEEEeccCCcCCCC
Confidence 999999999999986 998887653 47999999999999876555 3344556666654 3799999999 899
Q ss_pred chHHHHHHHHHH
Q 010548 164 VPDVFYYAQKAV 175 (507)
Q Consensus 164 i~~l~~~i~~~i 175 (507)
++++|..+.+.+
T Consensus 157 i~~~f~~l~~~~ 168 (170)
T cd04115 157 VEAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 91
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.91 E-value=2.2e-23 Score=187.48 Aligned_cols=157 Identities=17% Similarity=0.266 Sum_probs=122.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+||+++|++|||||||++++++..+.....+... .. .....+....+.+.+|||||+..+..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999887655333222 11 122233344578999999999999888999999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
|++++.+++.+.. |+..+.... .+.|+++|+||+|+...... ..+....+.+..+ .+++++||+++.|++++++
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDK-WIDDVRDERGNDVIIVLVGNKTDLSDKRQV--STEEGEKKAKELN--AMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEEEChhccccCcc--CHHHHHHHHHHhC--CEEEEEeCCCCCCHHHHHH
Confidence 9999999999886 888776543 36999999999999654443 2334455555554 3699999999999999999
Q ss_pred HHHHH
Q 010548 170 YAQKA 174 (507)
Q Consensus 170 ~i~~~ 174 (507)
+|.+.
T Consensus 156 ~i~~~ 160 (161)
T cd01861 156 KIASA 160 (161)
T ss_pred HHHHh
Confidence 98764
No 92
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.5e-24 Score=178.79 Aligned_cols=162 Identities=20% Similarity=0.278 Sum_probs=132.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
.--+||++||..|||||.|+.+++.+-|++....++. +.. .++.+.+++++++||||+|+++|++....|++.|+++|
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 3468999999999999999999999888665333221 222 44566678999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
+|||++...||+-+.+ |+.+|+.+.. ++--|+||||+|+.+.+++ .....+.+.+.... -++++||+...|++.
T Consensus 85 lvydiscqpsfdclpe-wlreie~yan~kvlkilvgnk~d~~drrev--p~qigeefs~~qdm--yfletsakea~nve~ 159 (213)
T KOG0095|consen 85 LVYDISCQPSFDCLPE-WLREIEQYANNKVLKILVGNKIDLADRREV--PQQIGEEFSEAQDM--YFLETSAKEADNVEK 159 (213)
T ss_pred EEEecccCcchhhhHH-HHHHHHHHhhcceEEEeeccccchhhhhhh--hHHHHHHHHHhhhh--hhhhhcccchhhHHH
Confidence 9999999999999997 9999998753 4556899999999887776 44455556555433 479999999999999
Q ss_pred HHHHHHHHHc
Q 010548 167 VFYYAQKAVL 176 (507)
Q Consensus 167 l~~~i~~~i~ 176 (507)
||..+.-.+.
T Consensus 160 lf~~~a~rli 169 (213)
T KOG0095|consen 160 LFLDLACRLI 169 (213)
T ss_pred HHHHHHHHHH
Confidence 9998876553
No 93
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.91 E-value=1.8e-23 Score=189.93 Aligned_cols=160 Identities=28% Similarity=0.432 Sum_probs=127.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D 91 (507)
+||+++|++|||||||+++|++..+.... ++...............+.+.+|||||++++.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999999874443 33222222333444567889999999999888888888899999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCcc---------chhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT---------SLEEVMGPIMQQFREIETCVECSATTMI 162 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 162 (507)
++++.++......|...+.....++|+++|+||+|+....... ...+....+...++.. +++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAI-GYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCe-EEEEeecCCCC
Confidence 9999999998878998888776689999999999997654220 1234455566666543 79999999999
Q ss_pred CchHHHHHHHH
Q 010548 163 QVPDVFYYAQK 173 (507)
Q Consensus 163 gi~~l~~~i~~ 173 (507)
|+.++++.|++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 94
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-23 Score=176.58 Aligned_cols=166 Identities=20% Similarity=0.278 Sum_probs=134.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT--RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (507)
....-+|++++|+.|.|||+|+.+++.++|......+..-- ..-+.+..+.++++||||+|+++|++..+.|+++|-+
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG 84 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 84 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 34557899999999999999999999998866654421110 0222344667899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548 86 VVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (507)
Q Consensus 86 il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 164 (507)
.++|||+++++||+.+.. |+..++... +++-+|++|||.||..++++ ... +...++++..- .+.++||++|+||
T Consensus 85 AlLVYD~TsrdsfnaLtn-WL~DaR~lAs~nIvviL~GnKkDL~~~R~V-tfl-EAs~FaqEnel--~flETSa~TGeNV 159 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTN-WLTDARTLASPNIVVILCGNKKDLDPEREV-TFL-EASRFAQENEL--MFLETSALTGENV 159 (214)
T ss_pred eEEEEeccchhhHHHHHH-HHHHHHhhCCCcEEEEEeCChhhcChhhhh-hHH-HHHhhhcccce--eeeeecccccccH
Confidence 999999999999999997 999988764 47889999999999999888 444 44555554432 5899999999999
Q ss_pred hHHHHHHHHHHcCC
Q 010548 165 PDVFYYAQKAVLHP 178 (507)
Q Consensus 165 ~~l~~~i~~~i~~~ 178 (507)
++.|-...+.++..
T Consensus 160 EEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 160 EEAFLKCARTILNK 173 (214)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888877543
No 95
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.91 E-value=3.4e-23 Score=191.34 Aligned_cols=162 Identities=27% Similarity=0.365 Sum_probs=126.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D 91 (507)
.||+|+|++|||||||++++..+.+.....++. ........+....+.+.+|||+|++.+......+++.+|++++|||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 699999999999999999999877755433322 2222223334445778999999998887777778899999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC---------CccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH---------NATSLEEVMGPIMQQFREIETCVECSATTMI 162 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 162 (507)
+++.++++.+...|...+++..++.|+++|+||+|+.... .. ...+....+++.++.. ++++|||++|.
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~e~Sa~~~~ 159 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRF-VPIQQGKRVAKEIGAK-KYMECSALTGE 159 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCc-CCHHHHHHHHHHhCCc-EEEEccCCCCC
Confidence 9999999999867999998777789999999999985421 11 1223456677777632 69999999999
Q ss_pred CchHHHHHHHHHHc
Q 010548 163 QVPDVFYYAQKAVL 176 (507)
Q Consensus 163 gi~~l~~~i~~~i~ 176 (507)
||+++|+.+.+.++
T Consensus 160 ~v~~~f~~l~~~~~ 173 (187)
T cd04129 160 GVDDVFEAATRAAL 173 (187)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
No 96
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.91 E-value=1.9e-23 Score=191.76 Aligned_cols=157 Identities=12% Similarity=0.138 Sum_probs=117.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+.+||+++|++|||||||++++..+.+....++.....+ .+...++.+.+|||||++.+..++..+++++|++|+|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~---~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE---EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4568999999999999999999998776543333222221 2344678999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHh-cCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc------CcEEEeCcccCC
Q 010548 90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI------ETCVECSATTMI 162 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~SA~~g~ 162 (507)
||++++.++..+...+...+.. ..+++|++||+||+|+.+.... ..+...++.. ..+++|||++|+
T Consensus 92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~-------~~~~~~l~l~~~~~~~~~~~~~Sa~~g~ 164 (181)
T PLN00223 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-------AEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCH-------HHHHHHhCccccCCCceEEEeccCCCCC
Confidence 9999999998887633333332 2247999999999999764321 1222222211 135689999999
Q ss_pred CchHHHHHHHHHHc
Q 010548 163 QVPDVFYYAQKAVL 176 (507)
Q Consensus 163 gi~~l~~~i~~~i~ 176 (507)
||.++|++|.+.+.
T Consensus 165 gv~e~~~~l~~~~~ 178 (181)
T PLN00223 165 GLYEGLDWLSNNIA 178 (181)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988764
No 97
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.91 E-value=3.9e-23 Score=187.80 Aligned_cols=162 Identities=22% Similarity=0.270 Sum_probs=125.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+||+++|++|||||||++++.+..+.....++.. ... ....+....+.+.+|||||++.+..+...+++.+|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999887555433222 111 22334445678899999999988888899999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcC-----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
|++++.+++.+.. |...+.... .++|+++|+||+|+...... ..+....++...+. .+++++||++|.|++
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDS-WRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQV--STKKAQQWCQSNGN-IPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCccCCCCceEEEEEECccccccccc--CHHHHHHHHHHcCC-ceEEEEECCCCCCHH
Confidence 9999999988875 777654433 27999999999999754333 23445566666653 379999999999999
Q ss_pred HHHHHHHHHHcCC
Q 010548 166 DVFYYAQKAVLHP 178 (507)
Q Consensus 166 ~l~~~i~~~i~~~ 178 (507)
++++.|.+.+...
T Consensus 157 ~l~~~i~~~~~~~ 169 (172)
T cd01862 157 QAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999876543
No 98
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.91 E-value=2.4e-23 Score=190.17 Aligned_cols=160 Identities=12% Similarity=0.116 Sum_probs=115.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
++.+||+++|.+|||||||++++..+.+....++...... .+....+.+.+|||||++.+...+..+++++|++|+|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVE---TVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceE---EEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 4569999999999999999999987776433333222111 2224578999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHH-HHh-cccCcEEEeCcccCCCchH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-QQF-REIETCVECSATTMIQVPD 166 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~SA~~g~gi~~ 166 (507)
||++++.+++...+.|...++.. .+++|++||+||+|+.+.... .+....+. ... .....++++||++|.|+++
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA---AEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCH---HHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 99999999999887344444332 247899999999999754221 11111110 000 1111467899999999999
Q ss_pred HHHHHHHHH
Q 010548 167 VFYYAQKAV 175 (507)
Q Consensus 167 l~~~i~~~i 175 (507)
+|++|.+.+
T Consensus 165 ~~~~l~~~~ 173 (175)
T smart00177 165 GLTWLSNNL 173 (175)
T ss_pred HHHHHHHHh
Confidence 999997754
No 99
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.91 E-value=2e-23 Score=187.63 Aligned_cols=155 Identities=12% Similarity=0.121 Sum_probs=112.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~ 92 (507)
+||+++|.+|||||||++++..+.+....++...... .+....+.+.+|||||++++...+..+++++|++|+|||+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~---~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~ 77 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE---EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 5899999999999999999988777543333222221 1234578899999999999988999999999999999999
Q ss_pred CChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHH-Hh-cccCcEEEeCcccCCCchHHHH
Q 010548 93 NQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ-QF-REIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
+++.+++.+.+.|...++.. ..++|++||+||+|+.+... ..+....+.. .. .....+++|||++|.||+++|+
T Consensus 78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 78 NDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS---AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred CCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC---HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence 99999999887444444332 23689999999999965321 1121222211 11 1111467999999999999999
Q ss_pred HHHH
Q 010548 170 YAQK 173 (507)
Q Consensus 170 ~i~~ 173 (507)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04150 155 WLSN 158 (159)
T ss_pred HHhc
Confidence 9854
No 100
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.90 E-value=3.8e-23 Score=187.81 Aligned_cols=156 Identities=16% Similarity=0.200 Sum_probs=117.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~ 93 (507)
||+++|.+|||||||++++.+..+....++...... .+...++.+.+|||||+..+...+..+++.+|++++|||++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~---~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s 77 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE---TVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS 77 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE---EEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC
Confidence 689999999999999999998876442333222221 23446789999999999988888999999999999999999
Q ss_pred ChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc----ccCcEEEeCcccCCCchHH
Q 010548 94 QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR----EIETCVECSATTMIQVPDV 167 (507)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~SA~~g~gi~~l 167 (507)
++.++.++.. |+..+.+. ..+.|+++|+||+|+.... ..+....++...+ ....+++|||++|.||+++
T Consensus 78 ~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 78 HRDRVSEAHS-ELAKLLTEKELRDALLLIFANKQDVAGAL----SVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred cHHHHHHHHH-HHHHHhcChhhCCCCEEEEEeCcCcccCC----CHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence 9999999876 65555432 2358999999999996532 1233333332111 1125789999999999999
Q ss_pred HHHHHHHHcC
Q 010548 168 FYYAQKAVLH 177 (507)
Q Consensus 168 ~~~i~~~i~~ 177 (507)
|++|.+.+..
T Consensus 153 f~~l~~~~~~ 162 (169)
T cd04158 153 LDWLSRQLVA 162 (169)
T ss_pred HHHHHHHHhh
Confidence 9999887643
No 101
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.90 E-value=6.5e-23 Score=184.67 Aligned_cols=158 Identities=22% Similarity=0.346 Sum_probs=125.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D 91 (507)
+||+++|++|||||||+++++...+...+.+... .......++...+.+.+|||||+..+......+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 5899999999999999999999887666444332 222333445567889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548 92 CNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
++++.++..+.. |...+... ..++|+++|+||+|+...... .......+...++. +++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDKRQV--SSEEAANLARQWGV--PYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEcccccccccc--CHHHHHHHHHHhCC--eEEEeeCCCCCCHHHHHH
Confidence 999999999887 66555543 247999999999999763332 23344555666653 799999999999999999
Q ss_pred HHHHHH
Q 010548 170 YAQKAV 175 (507)
Q Consensus 170 ~i~~~i 175 (507)
.+.+.+
T Consensus 156 ~l~~~~ 161 (164)
T cd04139 156 DLVREI 161 (164)
T ss_pred HHHHHH
Confidence 998765
No 102
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.90 E-value=7.1e-23 Score=183.94 Aligned_cols=158 Identities=20% Similarity=0.304 Sum_probs=124.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+||+++|++|||||||++++++..+.....+.. .... ....+....+.+.+|||+|++.+..+...+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999988755433222 2111 22233344578999999999888888889999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
|++++.+++.+.. |...++.... ++|+++|+||+|+...... ..+....+...++. +++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~--~~~~~s~~~~~gi~~~~~ 155 (162)
T cd04123 81 DITDADSFQKVKK-WIKELKQMRGNNISLVIVGNKIDLERQRVV--SKSEAEEYAKSVGA--KHFETSAKTGKGIEELFL 155 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccccCC--CHHHHHHHHHHcCC--EEEEEeCCCCCCHHHHHH
Confidence 9999999999886 8888776543 6899999999999865443 23344555555553 689999999999999999
Q ss_pred HHHHHH
Q 010548 170 YAQKAV 175 (507)
Q Consensus 170 ~i~~~i 175 (507)
+|.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04123 156 SLAKRM 161 (162)
T ss_pred HHHHHh
Confidence 998764
No 103
>PLN03108 Rab family protein; Provisional
Probab=99.90 E-value=7.2e-23 Score=192.59 Aligned_cols=162 Identities=19% Similarity=0.249 Sum_probs=129.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
..+||+|+|++|||||||+++|++..+.....++... .. ....+....+.+.+|||+|.+.+..+...+++.+|++|+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999998876554332221 11 123344456789999999999888888899999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
|||++++.+++.+.. |+..+... .++.|+++|+||+|+...+.. ..+....+++.++. +++++||+++.||+++
T Consensus 85 v~D~~~~~s~~~l~~-~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~e~Sa~~~~~v~e~ 159 (210)
T PLN03108 85 VYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKEHGL--IFMEASAKTAQNVEEA 159 (210)
T ss_pred EEECCcHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCccccCC--CHHHHHHHHHHcCC--EEEEEeCCCCCCHHHH
Confidence 999999999999876 88776654 347999999999999876554 33456667777653 7999999999999999
Q ss_pred HHHHHHHHcC
Q 010548 168 FYYAQKAVLH 177 (507)
Q Consensus 168 ~~~i~~~i~~ 177 (507)
|+++++.+..
T Consensus 160 f~~l~~~~~~ 169 (210)
T PLN03108 160 FIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHH
Confidence 9999887753
No 104
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.90 E-value=4.9e-23 Score=189.28 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=117.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
++.+||+++|++|||||||++++..+.+....++...... .+...++.+.+|||||++.+..++..+++.+|++|+|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~---~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE---TVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE---EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 4568999999999999999999987777543333222221 2334678999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHH-hc-ccCcEEEeCcccCCCchH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVPD 166 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~SA~~g~gi~~ 166 (507)
||++++.++......+...++.. ..++|++||+||+|+...... .+....+... .. ....++++||++|.|+++
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST---TEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH---HHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 99999999998876444444432 246899999999998653221 1111111110 10 011467999999999999
Q ss_pred HHHHHHHHHc
Q 010548 167 VFYYAQKAVL 176 (507)
Q Consensus 167 l~~~i~~~i~ 176 (507)
+|++|.+.+.
T Consensus 169 ~~~~l~~~i~ 178 (182)
T PTZ00133 169 GLDWLSANIK 178 (182)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 105
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.90 E-value=1.3e-22 Score=182.38 Aligned_cols=156 Identities=21% Similarity=0.290 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+||+++|++|||||||+++|.+..+.....++... .. ....+....+.+.+|||||++.+......+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998875543332222 11 22234455688999999999988888889999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
|++++.+++.+.. |...+.+.. .+.|+++|+||+|+..... ..+....+....+ .+++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~ 154 (161)
T cd01863 81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKENREV---TREEGLKFARKHN--MLFIETSAKTRDGVQQAF 154 (161)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCccccccc---CHHHHHHHHHHcC--CEEEEEecCCCCCHHHHH
Confidence 9999999999887 988887653 4799999999999974322 2234555666554 379999999999999999
Q ss_pred HHHHHH
Q 010548 169 YYAQKA 174 (507)
Q Consensus 169 ~~i~~~ 174 (507)
+.+.+.
T Consensus 155 ~~~~~~ 160 (161)
T cd01863 155 EELVEK 160 (161)
T ss_pred HHHHHh
Confidence 998764
No 106
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.90 E-value=3.7e-23 Score=186.85 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=118.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCC
Q 010548 15 VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ 94 (507)
Q Consensus 15 V~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~ 94 (507)
|+++|++|||||||++++.+..+...+.++..... ..+...++++.+|||+|+..+..++..+++.+|++|+|||+++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence 79999999999999999999877665444332211 2344567899999999999999999999999999999999999
Q ss_pred hhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccch--hhhhHHHHHHhcccCcEEEeCccc------CCCchH
Q 010548 95 QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL--EEVMGPIMQQFREIETCVECSATT------MIQVPD 166 (507)
Q Consensus 95 ~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~SA~~------g~gi~~ 166 (507)
+.++..... |+..+....+++|+++|+||+|+...+..... ......++++.+. .+++|||++ ++||++
T Consensus 80 ~~s~~~~~~-~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 80 SERLPLARQ-ELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRW--ILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred HHHHHHHHH-HHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCce--EEEEeeecCCCChhHHHHHHH
Confidence 999998876 77766554468999999999999776543000 1123444444332 578888888 999999
Q ss_pred HHHHHHH
Q 010548 167 VFYYAQK 173 (507)
Q Consensus 167 l~~~i~~ 173 (507)
+|+.++.
T Consensus 157 ~~~~~~~ 163 (164)
T cd04162 157 LLSQLIN 163 (164)
T ss_pred HHHHHhc
Confidence 9998764
No 107
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=2e-22 Score=182.81 Aligned_cols=161 Identities=19% Similarity=0.264 Sum_probs=123.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
...+||+++|++|||||||++++.++.+.....++.. .. .....+....+.+.+|||+|+..+......+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4568999999999999999999998776544322211 11 112234444578999999999888888889999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
+|||++++.+++.+.. |...++.... +.|+++|+||+|+...+.+ ..+....+.+... .++++|||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i--~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 85 LTYDITCEESFRCLPE-WLREIEQYANNKVITILVGNKIDLAERREV--SQQRAEEFSDAQD--MYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECccccccccc--CHHHHHHHHHHcC--CeEEEeeCCCCCCHHH
Confidence 9999999999998875 8888776543 6999999999999765554 2233344444443 3689999999999999
Q ss_pred HHHHHHHHH
Q 010548 167 VFYYAQKAV 175 (507)
Q Consensus 167 l~~~i~~~i 175 (507)
+|+.|.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998754
No 108
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.89 E-value=6.9e-22 Score=186.77 Aligned_cols=167 Identities=14% Similarity=0.248 Sum_probs=129.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCC
Q 010548 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (507)
Q Consensus 7 ~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (507)
......+||+++|++|||||||+++++.+.+...+.++..... .......+.+.+.+|||+|++.+......+++.++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 3356679999999999999999999988877655544333222 22223456789999999999988888888999999
Q ss_pred EEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548 85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (507)
Q Consensus 85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 164 (507)
++++|||++++.++..+.. |...+.....+.|+++|+||+|+.... . . .+ ...+....+. .++++||++|.|+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~i~lv~nK~Dl~~~~-~-~-~~-~~~~~~~~~~--~~~e~Sa~~~~~v 156 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPN-WHRDIVRVCENIPIVLVGNKVDVKDRQ-V-K-AR-QITFHRKKNL--QYYDISAKSNYNF 156 (215)
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECccCcccc-C-C-HH-HHHHHHHcCC--EEEEEeCCCCCCH
Confidence 9999999999999999985 988887766789999999999986432 2 1 12 2234444432 6899999999999
Q ss_pred hHHHHHHHHHHcCCCC
Q 010548 165 PDVFYYAQKAVLHPTA 180 (507)
Q Consensus 165 ~~l~~~i~~~i~~~~~ 180 (507)
+++|.+|++.+...+.
T Consensus 157 ~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 157 EKPFLWLARRLTNDPN 172 (215)
T ss_pred HHHHHHHHHHHhhccc
Confidence 9999999998865543
No 109
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.89 E-value=1.6e-22 Score=184.33 Aligned_cols=156 Identities=15% Similarity=0.164 Sum_probs=114.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
+..+||+++|++|||||||++++.+..+. .+.++...... .+..+++.+.+|||||++.+..++..+++.+|++++|
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~~~--~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQIK--TLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWV 88 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccceE--EEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 45689999999999999999999987543 22222111111 1223468899999999988888888999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHh--cCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh---cccCcEEEeCcccCCCc
Q 010548 90 YACNQQSTLSRLSSYWLPELRR--LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF---REIETCVECSATTMIQV 164 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~SA~~g~gi 164 (507)
||++++.++..... |+..+.. ...++|+++|+||+|+...... +....+.... ....++++|||++|.|+
T Consensus 89 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 89 VDSSDRLRLDDCKR-ELKELLQEERLAGATLLILANKQDLPGALSE----EEIREALELDKISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred EECCCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcccccCCCH----HHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence 99999999988876 5555432 2247999999999999764321 2223222211 11236999999999999
Q ss_pred hHHHHHHHH
Q 010548 165 PDVFYYAQK 173 (507)
Q Consensus 165 ~~l~~~i~~ 173 (507)
+++|+++..
T Consensus 164 ~~l~~~l~~ 172 (173)
T cd04154 164 LQGIDWLVD 172 (173)
T ss_pred HHHHHHHhc
Confidence 999998853
No 110
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.89 E-value=9.6e-23 Score=183.37 Aligned_cols=153 Identities=18% Similarity=0.215 Sum_probs=111.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~ 92 (507)
+|+++|++|||||||+++|.+..+ ...+.++.. .+. ..+...++++.+|||||.+++..++..+++.+|++|+|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g-~~~-~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~ 78 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG-FNV-ESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDS 78 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccc-cce-EEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeC
Confidence 589999999999999999998753 333333222 111 12334678999999999999999999999999999999999
Q ss_pred CChhhHHHHHHhHHHHHHhc----CCCCcEEEEEecccCCCCCCccchhhhhHHHHH--H-hcccCcEEEeCcccCCCch
Q 010548 93 NQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ--Q-FREIETCVECSATTMIQVP 165 (507)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~----~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~SA~~g~gi~ 165 (507)
+++.++..... |+..+.+. ..++|+++|+||+|+...... ........ . .....++++|||++|.|++
T Consensus 79 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~----~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 79 SDRLRLVVVKD-ELELLLNHPDIKHRRVPILFFANKMDLPDALTA----VKITQLLGLENIKDKPWHIFASNALTGEGLD 153 (162)
T ss_pred CcHHHHHHHHH-HHHHHHcCcccccCCCCEEEEEeCccccCCCCH----HHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence 99999887765 66655432 247999999999999754221 11111110 1 1111258999999999999
Q ss_pred HHHHHHHH
Q 010548 166 DVFYYAQK 173 (507)
Q Consensus 166 ~l~~~i~~ 173 (507)
++|++|.+
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99999854
No 111
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.89 E-value=2.8e-22 Score=184.53 Aligned_cols=160 Identities=13% Similarity=0.166 Sum_probs=118.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcc-cCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+||+++|.+|||||||++++....+....++...... ..... ...++.+.+|||+|++.+..++..+++.+|++++|
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 82 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV 82 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999998887655443222211 22222 23568999999999988888899999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHH--Hhcc--cCcEEEeCcccCCC
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ--QFRE--IETCVECSATTMIQ 163 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~SA~~g~g 163 (507)
||++++.+++.+.. |+..+... ..++|+++|+||+|+...... +....+.. .... ..++++|||++|.|
T Consensus 83 ~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 157 (183)
T cd04152 83 VDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPNALSV----SEVEKLLALHELSASTPWHVQPACAIIGEG 157 (183)
T ss_pred EECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCccccCCH----HHHHHHhCccccCCCCceEEEEeecccCCC
Confidence 99999999888775 66655543 237999999999998653221 22222221 1111 12578999999999
Q ss_pred chHHHHHHHHHHc
Q 010548 164 VPDVFYYAQKAVL 176 (507)
Q Consensus 164 i~~l~~~i~~~i~ 176 (507)
+++++++|.+.+.
T Consensus 158 i~~l~~~l~~~l~ 170 (183)
T cd04152 158 LQEGLEKLYEMIL 170 (183)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998774
No 112
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.89 E-value=3.7e-22 Score=186.09 Aligned_cols=159 Identities=21% Similarity=0.270 Sum_probs=120.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~ 92 (507)
||+++|++|||||||++++++..+...+.++..... ....+....+.+.+|||+|+..+..+...+++.+|++|+|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 699999999999999999999887665544332221 2223333457899999999998888888999999999999999
Q ss_pred CChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCC-CCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548 93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGD-HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
+++.+++.+.. |...+.... .++|+++|+||+|+... ..+ ............++ .+++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v-~~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVER-LREEILEVKEDKFVPIVVVGNKADSLEEERQV-PAKDALSTVELDWN--CGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEccccccccccc-cHHHHHHHHHhhcC--CcEEEecCCCCCCHHHHHH
Confidence 99999999876 777766542 37999999999999763 333 22222212111222 2689999999999999999
Q ss_pred HHHHHHc
Q 010548 170 YAQKAVL 176 (507)
Q Consensus 170 ~i~~~i~ 176 (507)
+|.+.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998764
No 113
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.89 E-value=2.6e-22 Score=180.10 Aligned_cols=154 Identities=12% Similarity=0.133 Sum_probs=111.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~ 93 (507)
||+++|++|||||||++++..+.+....++...... .+...++++.+|||||+..+..++..+++.+|++|+|+|++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~ 77 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE---TVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDST 77 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE---EEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECC
Confidence 689999999999999999988776543333222221 23345789999999999988888899999999999999999
Q ss_pred ChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHH-hc-ccCcEEEeCcccCCCchHHHHH
Q 010548 94 QQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVPDVFYY 170 (507)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~SA~~g~gi~~l~~~ 170 (507)
++.++......|...++.. ..++|+++|+||+|+.+.... .+....+... .. ...++++|||++|.|++++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 154 (158)
T cd04151 78 DRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE---AEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDW 154 (158)
T ss_pred CHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH---HHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHH
Confidence 9988877666455444432 247999999999998754211 1111111110 00 0125899999999999999999
Q ss_pred HHH
Q 010548 171 AQK 173 (507)
Q Consensus 171 i~~ 173 (507)
|.+
T Consensus 155 l~~ 157 (158)
T cd04151 155 LVN 157 (158)
T ss_pred Hhc
Confidence 864
No 114
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.89 E-value=4.2e-22 Score=178.51 Aligned_cols=156 Identities=21% Similarity=0.354 Sum_probs=123.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~ 92 (507)
||+|+|++|||||||++++++..+...+.++.... .....+....+.+.+||+||...+......+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 69999999999999999999888766655543322 12223333467899999999998888888999999999999999
Q ss_pred CChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHH
Q 010548 93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (507)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 170 (507)
+++.++..+.. |...+.... .++|+++|+||+|+...... ..+....+...++ .+++++||+++.|+++++++
T Consensus 81 ~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENERQV--SKEEGKALAKEWG--CPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCccccccee--cHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHH
Confidence 99999999887 665555443 37999999999999874443 3344556666665 37999999999999999999
Q ss_pred HHHH
Q 010548 171 AQKA 174 (507)
Q Consensus 171 i~~~ 174 (507)
|.+.
T Consensus 156 l~~~ 159 (160)
T cd00876 156 LVRE 159 (160)
T ss_pred HHhh
Confidence 9764
No 115
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.89 E-value=5.7e-22 Score=181.85 Aligned_cols=161 Identities=19% Similarity=0.209 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D 91 (507)
.||+++|++|||||||++++.+..+...+.++.. ..+....+....+.+.+|||||+.++......++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 6899999999999999999999887665444332 233333444456788999999999888888899999999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHH
Q 010548 92 CNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 170 (507)
+++..+++.+...|...++... .+.|+|+|+||+|+...+.. .......+...++ .+++++||++|.|+.+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~ 157 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQV--STEEGKELAESWG--AAFLESSARENENVEEAFEL 157 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCcc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHH
Confidence 9999999999874444444332 36899999999999765443 2233455566655 36899999999999999999
Q ss_pred HHHHHcC
Q 010548 171 AQKAVLH 177 (507)
Q Consensus 171 i~~~i~~ 177 (507)
+.+.+..
T Consensus 158 l~~~~~~ 164 (180)
T cd04137 158 LIEEIEK 164 (180)
T ss_pred HHHHHHH
Confidence 9987743
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.88 E-value=3.9e-22 Score=182.06 Aligned_cols=157 Identities=17% Similarity=0.202 Sum_probs=115.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+.+||+++|++|||||||+++++.+.+....++...... .+...+..+.+|||||+..+...+..+++.+|++++|+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~---~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~ 90 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE---EIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI 90 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE---EEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence 468999999999999999999998877654333222221 23345789999999999988888899999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHH-h-cccCcEEEeCcccCCCchHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-F-REIETCVECSATTMIQVPDV 167 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~SA~~g~gi~~l 167 (507)
|++++.++......+...++.. ..++|+++++||+|+..... .++....+... . ....++++|||++|.||+++
T Consensus 91 D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~---~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 91 DSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT---PAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC---HHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence 9999999888776444444332 24699999999999875321 11111222100 0 01125899999999999999
Q ss_pred HHHHHH
Q 010548 168 FYYAQK 173 (507)
Q Consensus 168 ~~~i~~ 173 (507)
|++|.+
T Consensus 168 ~~~l~~ 173 (174)
T cd04153 168 LDWIAS 173 (174)
T ss_pred HHHHhc
Confidence 999864
No 117
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.5e-23 Score=176.96 Aligned_cols=163 Identities=17% Similarity=0.241 Sum_probs=134.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCCCCee-eCCcc-------c--CCceEEEEEeCCCCccchhhhHH
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP-PVHAPTR-LPPDF-------Y--PDRVPVTIIDTSSSLENKGKLNE 78 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~-~~~~~~t-~~~~~-------~--~~~~~~~i~Dt~G~~~~~~~~~~ 78 (507)
..-+|.+.+|++||||||++.+++.++|..... ++.-+.. ....+ . ...+.+++|||+|+++|+++...
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 345788899999999999999999999877633 2221111 00001 1 22577899999999999999999
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEe
Q 010548 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC 156 (507)
Q Consensus 79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (507)
+++.|-+++++||+++..||-++.. |+..++.+ +.+.-|+++|||+|+.+.+.+ .+..+..++.+++- ||||+
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~R~V--s~~qa~~La~kygl--PYfET 161 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQRVV--SEDQAAALADKYGL--PYFET 161 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhhhhh--hHHHHHHHHHHhCC--Ceeee
Confidence 9999999999999999999999997 99998764 668889999999999998887 66778899999985 79999
Q ss_pred CcccCCCchHHHHHHHHHHcC
Q 010548 157 SATTMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 157 SA~~g~gi~~l~~~i~~~i~~ 177 (507)
||-+|.||++..+.+...+++
T Consensus 162 SA~tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 162 SACTGTNVEKAVELLLDLVMK 182 (219)
T ss_pred ccccCcCHHHHHHHHHHHHHH
Confidence 999999999988888776643
No 118
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.88 E-value=6.7e-22 Score=176.38 Aligned_cols=155 Identities=23% Similarity=0.325 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+||+++|++|||||||++++.+..+.....++..... ...........+.+||+||+..+......+++.+|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999887665333222111 22233345688999999999888888899999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
|++++.+++.+.. |+..+.... .++|+++|+||+|+...... ..+....+....+ .+++++||+++.|++++++
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~ 155 (159)
T cd00154 81 DITNRESFENLDK-WLKELKEYAPENIPIILVGNKIDLEDQRQV--STEEAQQFAKENG--LLFFETSAKTGENVEELFQ 155 (159)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEcccccccccc--cHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHH
Confidence 9999999999887 888887764 57999999999999744333 2345556666543 3799999999999999999
Q ss_pred HHH
Q 010548 170 YAQ 172 (507)
Q Consensus 170 ~i~ 172 (507)
+|.
T Consensus 156 ~i~ 158 (159)
T cd00154 156 SLA 158 (159)
T ss_pred HHh
Confidence 875
No 119
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.88 E-value=5.9e-22 Score=182.70 Aligned_cols=162 Identities=24% Similarity=0.300 Sum_probs=139.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
..+||+++|.+|||||+|..+++...|...+.++.+ .++....++...+.+.|+||+|++++..+...+++.+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 468999999999999999999999999999766555 4556667777788999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHh-cC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 90 YACNQQSTLSRLSSYWLPELRR-LE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~-~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
|+++++.||+.+.. +...|.+ .. ...|+++||||+|+...+.+ ..++...++..++. +|+|+||+.+.+++++
T Consensus 82 ysitd~~SF~~~~~-l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V--~~eeg~~la~~~~~--~f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQ-LREQILRVKGRDDVPIILVGNKCDLERERQV--SEEEGKALARSWGC--AFIETSAKLNYNVDEV 156 (196)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhCcCCCCEEEEEEcccchhcccc--CHHHHHHHHHhcCC--cEEEeeccCCcCHHHH
Confidence 99999999999997 6666633 32 35899999999999988777 45567777888874 6999999999999999
Q ss_pred HHHHHHHHcC
Q 010548 168 FYYAQKAVLH 177 (507)
Q Consensus 168 ~~~i~~~i~~ 177 (507)
|..|.+.+..
T Consensus 157 F~~L~r~~~~ 166 (196)
T KOG0395|consen 157 FYELVREIRL 166 (196)
T ss_pred HHHHHHHHHh
Confidence 9999998755
No 120
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.88 E-value=4.1e-22 Score=180.65 Aligned_cols=156 Identities=20% Similarity=0.270 Sum_probs=115.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~ 93 (507)
+|+++|.+|||||||++++.+. +...+.++...... .+...++.+.+|||||+..+..++..+++.+|++|+|||++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s 77 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS 77 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE--EEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence 4899999999999999999976 44443333322222 33346789999999999989999999999999999999999
Q ss_pred ChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhh--hhHHHHHHhcccCcEEEeCcccC------CC
Q 010548 94 QQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEE--VMGPIMQQFREIETCVECSATTM------IQ 163 (507)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~SA~~g------~g 163 (507)
+..+++.+.. |+..+.+.. .++|+++|+||+|+...+......+ ....++.+.+....+++|||++| .|
T Consensus 78 ~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g 156 (167)
T cd04161 78 DDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPS 156 (167)
T ss_pred chhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccC
Confidence 9999998876 776665432 4799999999999987543201111 11222222222236788999998 89
Q ss_pred chHHHHHHHH
Q 010548 164 VPDVFYYAQK 173 (507)
Q Consensus 164 i~~l~~~i~~ 173 (507)
+.+.|+||..
T Consensus 157 ~~~~~~wl~~ 166 (167)
T cd04161 157 IVEGLRWLLA 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.88 E-value=5.4e-22 Score=178.21 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=111.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~ 93 (507)
||+++|++|||||||++++.+..+....++...... ...+ ...+.+.+|||||+..+...+..+++.+|++++|+|++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~ 78 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSS 78 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC
Confidence 689999999999999999999887554433221111 1111 34678999999999888888888999999999999999
Q ss_pred ChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHH-HHhc--ccCcEEEeCcccCCCchHHH
Q 010548 94 QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-QQFR--EIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~SA~~g~gi~~l~ 168 (507)
++.++..... |+..+.+. ..+.|+++|+||+|+...... .+....+. ..+. ...++++|||++|.|++++|
T Consensus 79 ~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 79 DEARLDESQK-ELKHILKNEHIKGVPVVLLANKQDLPGALTA---EEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred cHHHHHHHHH-HHHHHHhchhhcCCCEEEEEECcccccCcCH---HHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 9998888876 55544332 247999999999998643211 11111110 1111 11258999999999999999
Q ss_pred HHHHH
Q 010548 169 YYAQK 173 (507)
Q Consensus 169 ~~i~~ 173 (507)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 122
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.87 E-value=1.6e-21 Score=194.63 Aligned_cols=220 Identities=19% Similarity=0.169 Sum_probs=164.2
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchhhhH------
Q 010548 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGKLN------ 77 (507)
Q Consensus 7 ~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------ 77 (507)
+..+..+||+|+|+||||||||+|.|++.. .++++..+++| +...+..+++.+.++||+|..+..+..+
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d--~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeR 289 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGRD--RAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIER 289 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcCC--ceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHH
Confidence 345678999999999999999999999988 88899999988 5567778899999999999987666544
Q ss_pred --HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEE
Q 010548 78 --EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE 155 (507)
Q Consensus 78 --~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (507)
..+++||.+++|+|.+.+.+-.+.. .+. ....++|+++|.||+|+..+... . .. +...-.+++.
T Consensus 290 s~~~i~~ADlvL~v~D~~~~~~~~d~~--~~~---~~~~~~~~i~v~NK~DL~~~~~~----~---~~--~~~~~~~~i~ 355 (454)
T COG0486 290 AKKAIEEADLVLFVLDASQPLDKEDLA--LIE---LLPKKKPIIVVLNKADLVSKIEL----E---SE--KLANGDAIIS 355 (454)
T ss_pred HHHHHHhCCEEEEEEeCCCCCchhhHH--HHH---hcccCCCEEEEEechhccccccc----c---hh--hccCCCceEE
Confidence 5789999999999999974444433 222 22347999999999999875332 1 01 1111115899
Q ss_pred eCcccCCCchHHHHHHHHHHcCC---C-CCCCccchh-cccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCC
Q 010548 156 CSATTMIQVPDVFYYAQKAVLHP---T-APLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPL 230 (507)
Q Consensus 156 ~SA~~g~gi~~l~~~i~~~i~~~---~-~~~~~~~~~-~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l 230 (507)
+||++|+|++.|.+.|.+.+... . .....+.++ ...+++..++.+.....+...+.++.+++++.++..+.....
T Consensus 356 iSa~t~~Gl~~L~~~i~~~~~~~~~~~~~~~i~~~Rh~~~L~~a~~~l~~a~~~~~~~~~~dl~a~dLr~A~~~LgeItG 435 (454)
T COG0486 356 ISAKTGEGLDALREAIKQLFGKGLGNQEGLFLSNLRHIQLLEQAAEHLEDALQQLELGQPLDLLAEDLRLAQEALGEITG 435 (454)
T ss_pred EEecCccCHHHHHHHHHHHHhhcccccccceeecHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHHHHHHHhhC
Confidence 99999999999999999887544 1 122233444 477888888888888777655889999999999887554433
Q ss_pred CHHHHHHHHHHHH
Q 010548 231 QPAEIVGVKRVVQ 243 (507)
Q Consensus 231 ~~~~~~~l~~~i~ 243 (507)
. ...+++++.+.
T Consensus 436 ~-~~~edlLd~IF 447 (454)
T COG0486 436 E-FVSEDLLDEIF 447 (454)
T ss_pred C-CchHHHHHHHH
Confidence 2 23555555554
No 123
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.9e-22 Score=163.23 Aligned_cols=164 Identities=22% Similarity=0.290 Sum_probs=138.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC--CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
....+|-+|+|+-|||||+|+.++..++|...-|.+.. -.|.-+++...+++++||||+|+++|+...+.+++++-+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 34578999999999999999999999998777555322 1123345667889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
++|||++.+.++..+.. |+...+.. +++..+++++||.|+...+.+ .-++...++.+.+- .++++||++|.||+
T Consensus 88 lmvyditrrstynhlss-wl~dar~ltnpnt~i~lignkadle~qrdv--~yeeak~faeengl--~fle~saktg~nve 162 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLESQRDV--TYEEAKEFAEENGL--MFLEASAKTGQNVE 162 (215)
T ss_pred eEEEEehhhhhhhhHHH-HHhhhhccCCCceEEEEecchhhhhhcccC--cHHHHHHHHhhcCe--EEEEecccccCcHH
Confidence 99999999999999987 98887765 467889999999999998887 44567788888875 58999999999999
Q ss_pred HHHHHHHHHHcC
Q 010548 166 DVFYYAQKAVLH 177 (507)
Q Consensus 166 ~l~~~i~~~i~~ 177 (507)
+.|-...+.+..
T Consensus 163 dafle~akkiyq 174 (215)
T KOG0097|consen 163 DAFLETAKKIYQ 174 (215)
T ss_pred HHHHHHHHHHHH
Confidence 999777776643
No 124
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.87 E-value=3.9e-23 Score=169.37 Aligned_cols=156 Identities=21% Similarity=0.287 Sum_probs=130.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC
Q 010548 17 VVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (507)
Q Consensus 17 ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~ 93 (507)
++|++++|||.|+-|+-.+.|... +.+..-.+. .-++.+..++++++|||+|+++|++....|++.||+.+++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 689999999999999887776443 333222222 33455677899999999999999999999999999999999999
Q ss_pred ChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHH
Q 010548 94 QQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ 172 (507)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~ 172 (507)
++.||++... |+.+|.++.. .+.+.++|||||+..++.+ ..+..+.+++.++. |+.++||++|.||+-.|-.|.
T Consensus 82 nkasfdn~~~-wlsei~ey~k~~v~l~llgnk~d~a~er~v--~~ddg~kla~~y~i--pfmetsaktg~nvd~af~~ia 156 (192)
T KOG0083|consen 82 NKASFDNCQA-WLSEIHEYAKEAVALMLLGNKCDLAHERAV--KRDDGEKLAEAYGI--PFMETSAKTGFNVDLAFLAIA 156 (192)
T ss_pred cchhHHHHHH-HHHHHHHHHHhhHhHhhhccccccchhhcc--ccchHHHHHHHHCC--CceeccccccccHhHHHHHHH
Confidence 9999999997 9999998753 5788999999999887776 45667889999985 799999999999999999998
Q ss_pred HHHcC
Q 010548 173 KAVLH 177 (507)
Q Consensus 173 ~~i~~ 177 (507)
+.+..
T Consensus 157 ~~l~k 161 (192)
T KOG0083|consen 157 EELKK 161 (192)
T ss_pred HHHHH
Confidence 87643
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.87 E-value=2.5e-21 Score=178.29 Aligned_cols=158 Identities=13% Similarity=0.195 Sum_probs=114.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+.+||+++|.+|||||||++++.+..+....++..+. . ..+..+++++.+|||||+..+...+..+++.+|++++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~-~--~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPT-S--EELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccc-e--EEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 45689999999999999999999988764322222221 1 12234568899999999988888899999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh---------cccCcEEEeCc
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF---------REIETCVECSA 158 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~SA 158 (507)
+|++++.++..... ++..+.+. ..++|+++|+||+|+...... ++....+.... .....+++|||
T Consensus 92 vD~~~~~~~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~---~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 92 VDAYDKERFAESKR-ELDALLSDEELATVPFLILGNKIDAPYAASE---DELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EECCcHHHHHHHHH-HHHHHHcChhhcCCCEEEEEeCccccCCCCH---HHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 99999998888776 44444321 247999999999998653221 11111110000 01235899999
Q ss_pred ccCCCchHHHHHHHHH
Q 010548 159 TTMIQVPDVFYYAQKA 174 (507)
Q Consensus 159 ~~g~gi~~l~~~i~~~ 174 (507)
++|.|+++++++|.+.
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999764
No 126
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.87 E-value=2.5e-21 Score=179.23 Aligned_cols=157 Identities=16% Similarity=0.278 Sum_probs=115.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+..||+++|++|||||||++++.+..+....++..+ .. ..+...+..+.+|||||+..+...+..+++.+|++++|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~-~~--~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHP-TS--EELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCc-ce--EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4578999999999999999999998876432222222 11 12334468899999999988888888899999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh--------------cccCcE
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--------------REIETC 153 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 153 (507)
+|+++..++..... |+..+.+. ..+.|+++|+||+|+... + ..+......... .....+
T Consensus 94 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~~pvivv~NK~Dl~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 94 VDAADPERFQESKE-ELDSLLSDEELANVPFLILGNKIDLPGA--V--SEEELRQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EECCcHHHHHHHHH-HHHHHHcCccccCCCEEEEEeCCCCCCC--c--CHHHHHHHhCcccccccccccccccCceeEEE
Confidence 99999988887776 55444332 246999999999998653 1 123333333211 112258
Q ss_pred EEeCcccCCCchHHHHHHHHH
Q 010548 154 VECSATTMIQVPDVFYYAQKA 174 (507)
Q Consensus 154 ~~~SA~~g~gi~~l~~~i~~~ 174 (507)
++|||++|.|++++|++|.+.
T Consensus 169 ~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 169 FMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEeEecCCCChHHHHHHHHhh
Confidence 999999999999999999764
No 127
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.87 E-value=3.5e-21 Score=172.60 Aligned_cols=153 Identities=15% Similarity=0.211 Sum_probs=112.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~ 93 (507)
||+++|.+|||||||++++++..+....++..... . .+......+.+|||||+..+...+..+++.+|++++|||++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~-~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~ 77 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNV-E--TVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSS 77 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcce-E--EEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECC
Confidence 69999999999999999999987433222221111 1 12234688999999999998888999999999999999999
Q ss_pred ChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHH--hcccCcEEEeCcccCCCchHHHH
Q 010548 94 QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ--FREIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
++.++..... |+..+... ..+.|+++|+||+|+...... ++....+... .....+++++||++|.|++++|+
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 78 DRERIEEAKE-ELHKLLNEEELKGVPLLIFANKQDLPGALSV---SELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CHHHHHHHHH-HHHHHHhCcccCCCcEEEEeeccCCccccCH---HHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 9999998876 55544332 247999999999998764322 1111111111 11223799999999999999999
Q ss_pred HHHH
Q 010548 170 YAQK 173 (507)
Q Consensus 170 ~i~~ 173 (507)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9864
No 128
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.86 E-value=3.6e-21 Score=174.12 Aligned_cols=155 Identities=14% Similarity=0.150 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeeC---CcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
+|+++|++|||||||+++|.+..... .........|+. ..+...+..+.+|||||+..+...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 58999999999999999998754211 111111111111 12234578999999999998888888999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh----c-ccCcEEEeCcccCC
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF----R-EIETCVECSATTMI 162 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~SA~~g~ 162 (507)
+|++++.++..... |+..+.+. ..++|+++|+||+|+...... .....+.... + ...+++++||++|.
T Consensus 81 vd~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 155 (167)
T cd04160 81 IDSTDRERFEESKS-ALEKVLRNEALEGVPLLILANKQDLPDALSV----EEIKEVFQDKAEEIGRRDCLVLPVSALEGT 155 (167)
T ss_pred EECchHHHHHHHHH-HHHHHHhChhhcCCCEEEEEEccccccCCCH----HHHHHHhccccccccCCceEEEEeeCCCCc
Confidence 99999988888776 55544332 247999999999998664221 2222222221 1 11269999999999
Q ss_pred CchHHHHHHHH
Q 010548 163 QVPDVFYYAQK 173 (507)
Q Consensus 163 gi~~l~~~i~~ 173 (507)
|+++++++|.+
T Consensus 156 gv~e~~~~l~~ 166 (167)
T cd04160 156 GVREGIEWLVE 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 129
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.86 E-value=5.7e-21 Score=177.44 Aligned_cols=147 Identities=22% Similarity=0.240 Sum_probs=113.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCcc-----cCCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDF-----YPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~-----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (507)
+||+++|++|||||||+++++++.|...+.++... .. ....+ ....+.+.+|||+|++++..+...+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999987765544331 11 11222 1346889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhHHHHHHhc--------------------CCCCcEEEEEecccCCCCCCccchh---hhhHH
Q 010548 86 VVLTYACNQQSTLSRLSSYWLPELRRL--------------------EIKVPIIVAGCKLDLRGDHNATSLE---EVMGP 142 (507)
Q Consensus 86 il~V~D~~~~~s~~~~~~~~~~~l~~~--------------------~~~~piilv~NK~Dl~~~~~~~~~~---~~~~~ 142 (507)
+|+|||++++.|++++.. |+..+... ..++|+||||||+|+.+++.. ... .....
T Consensus 81 iIlVyDvtn~~Sf~~l~~-W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~-~~~~~~~~~~~ 158 (202)
T cd04102 81 IILVHDLTNRKSSQNLQR-WSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES-SGNLVLTARGF 158 (202)
T ss_pred EEEEEECcChHHHHHHHH-HHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc-chHHHhhHhhh
Confidence 999999999999999985 99988652 136899999999999776544 222 23446
Q ss_pred HHHHhcccCcEEEeCcccCCC
Q 010548 143 IMQQFREIETCVECSATTMIQ 163 (507)
Q Consensus 143 ~~~~~~~~~~~~~~SA~~g~g 163 (507)
++++++. +.++.++++...
T Consensus 159 ia~~~~~--~~i~~~c~~~~~ 177 (202)
T cd04102 159 VAEQGNA--EEINLNCTNGRL 177 (202)
T ss_pred HHHhcCC--ceEEEecCCccc
Confidence 6777775 578888876543
No 130
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.86 E-value=6.4e-21 Score=198.23 Aligned_cols=214 Identities=19% Similarity=0.176 Sum_probs=148.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchhh--------hHH
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGK--------LNE 78 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~ 78 (507)
+..++|+++|.+|||||||+|+|++... .+++..+++| ....+..++..+.+|||||+.++... ...
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~--a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEER--AIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 4568999999999999999999998763 2222223333 12233345778999999998765432 224
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (507)
Q Consensus 79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (507)
+++.+|++++|+|++++.+++.... |.. ..++|+++|+||+|+...... . ... ..+++++||
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~~-l~~-----~~~~piiiV~NK~DL~~~~~~-~---------~~~--~~~~i~iSA 352 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDEI-LEE-----LKDKPVIVVLNKADLTGEIDL-E---------EEN--GKPVIRISA 352 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHHH-HHh-----cCCCCcEEEEEhhhccccchh-h---------hcc--CCceEEEEe
Confidence 6899999999999999988776542 332 347899999999999754322 1 111 136899999
Q ss_pred ccCCCchHHHHHHHHHHcCC-----CCCCCccchh-cccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCH
Q 010548 159 TTMIQVPDVFYYAQKAVLHP-----TAPLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQP 232 (507)
Q Consensus 159 ~~g~gi~~l~~~i~~~i~~~-----~~~~~~~~~~-~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~ 232 (507)
++|.|+++++++|.+.+... ........++ ....++.++|.+.........+.++.+++|+.+......... .
T Consensus 353 ktg~GI~~L~~~L~~~l~~~~~~~~~~~~~~~~R~~~~l~~a~~~l~~~~~~~~~~~~~~~~a~~l~~a~~~l~~i~G-~ 431 (449)
T PRK05291 353 KTGEGIDELREAIKELAFGGFGGNQEGVFLTNARHLEALERALEHLERALEGLESGLPLELLAEDLRLALEALGEITG-E 431 (449)
T ss_pred eCCCCHHHHHHHHHHHHhhccccccccceehHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhC-C
Confidence 99999999999999877431 1222223333 366778888887776665555678999999988887554433 3
Q ss_pred HHHHHHHHHHHh
Q 010548 233 AEIVGVKRVVQE 244 (507)
Q Consensus 233 ~~~~~l~~~i~~ 244 (507)
...+++++.|..
T Consensus 432 ~~~e~iLd~iF~ 443 (449)
T PRK05291 432 VTSEDLLDRIFS 443 (449)
T ss_pred CChHHHHHHHHH
Confidence 556666666644
No 131
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.85 E-value=1.4e-20 Score=194.61 Aligned_cols=217 Identities=17% Similarity=0.157 Sum_probs=148.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchhh--------hH
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGK--------LN 77 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~ 77 (507)
....+||+++|++|||||||+|+|++... ...+..+++| ....+..++..+.+|||||+.++... ..
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~--aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDR--AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCC--cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 34578999999999999999999998752 2223334444 22334456788999999998655432 23
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (507)
Q Consensus 78 ~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (507)
.+++.+|++++|||++++.+++.. |+..+... ++|+++|+||+|+... . ...+.+.++. +++++|
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~---~l~~~~~~--~~piIlV~NK~Dl~~~-~-------~~~~~~~~~~--~~~~vS 342 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF---LIIDLNKS--KKPFILVLNKIDLKIN-S-------LEFFVSSKVL--NSSNLS 342 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH---HHHHHhhC--CCCEEEEEECccCCCc-c-------hhhhhhhcCC--ceEEEE
Confidence 578999999999999998887654 66655543 7899999999998643 1 1223334432 589999
Q ss_pred cccCCCchHHHHHHHHHHcCC--------CCCCCccchh-cccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCC
Q 010548 158 ATTMIQVPDVFYYAQKAVLHP--------TAPLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA 228 (507)
Q Consensus 158 A~~g~gi~~l~~~i~~~i~~~--------~~~~~~~~~~-~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~ 228 (507)
|++ .||+++++.+.+.+... ......+.++ ....++..++.+...........++.+++|+.++......
T Consensus 343 ak~-~gI~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~r~~~~l~~a~~~l~~~~~~~~~~~~~el~a~~l~~a~~~l~~i 421 (442)
T TIGR00450 343 AKQ-LKIKALVDLLTQKINAFYSKERVELDDYLISSWQAMILLEKAIAQLQQFLSKLDRQLFLDMLVFHLREAINCLGQV 421 (442)
T ss_pred Eec-CCHHHHHHHHHHHHHHHhcccccccccceEhHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 998 69999988888766322 1111222333 3566777777777766655556789999999888875544
Q ss_pred CCCHHHHHHHHHHHHh
Q 010548 229 PLQPAEIVGVKRVVQE 244 (507)
Q Consensus 229 ~l~~~~~~~l~~~i~~ 244 (507)
.. ....+++++.|..
T Consensus 422 tG-~~~~ediLd~iFs 436 (442)
T TIGR00450 422 TG-EVVTEDVLDEIFS 436 (442)
T ss_pred hC-CCCcHHHHHHHHh
Confidence 33 2345666665543
No 132
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.85 E-value=1.7e-20 Score=171.77 Aligned_cols=154 Identities=17% Similarity=0.169 Sum_probs=110.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCCC-----CCee-----eCCcc---cCCceEEEEEeCCCCccch
Q 010548 14 RVVVVGDRGTGKSSLIAAAATES-------VPEKVPPVH-----APTR-----LPPDF---YPDRVPVTIIDTSSSLENK 73 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~-------~~~~~~~~~-----~~~t-----~~~~~---~~~~~~~~i~Dt~G~~~~~ 73 (507)
+|+++|++|||||||+++|++.. +...+.+.. .+.+ ....+ ...++.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 69999999999999999999743 111111111 0111 11112 3457889999999999999
Q ss_pred hhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc-Cc
Q 010548 74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ET 152 (507)
Q Consensus 74 ~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~ 152 (507)
..+..+++.+|++|+|+|++++.+...... |... ... ++|+++|+||+|+.+.. .......+++.++.. ..
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~-~~~~-~~~--~~~iiiv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~ 153 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLAN-FYLA-LEN--NLEIIPVINKIDLPSAD----PERVKQQIEDVLGLDPSE 153 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHH-HHHH-HHc--CCCEEEEEECCCCCcCC----HHHHHHHHHHHhCCCccc
Confidence 889999999999999999999877766553 4432 233 78999999999986532 122234455554421 24
Q ss_pred EEEeCcccCCCchHHHHHHHHHH
Q 010548 153 CVECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 153 ~~~~SA~~g~gi~~l~~~i~~~i 175 (507)
++++||++|.|+++++++|.+.+
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 154 AILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEEeeccCCCCHHHHHHHHHhhC
Confidence 89999999999999999998875
No 133
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.85 E-value=2e-20 Score=169.36 Aligned_cols=152 Identities=21% Similarity=0.167 Sum_probs=104.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC---cccCCceEEEEEeCCCCccch----h-----hhHHhhc
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP---DFYPDRVPVTIIDTSSSLENK----G-----KLNEELK 81 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~i~Dt~G~~~~~----~-----~~~~~~~ 81 (507)
+|+++|++|||||||+|+|++..+.... .+.+|... .+..+++.+.+|||||+.... . .......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAP---YPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCC---CCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 7999999999999999999998753221 11222221 223356899999999974211 0 0111123
Q ss_pred cCCEEEEEEeCCChhhH--HHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 82 RADAVVLTYACNQQSTL--SRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 82 ~ad~il~V~D~~~~~s~--~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
.+|++|+|+|+++..++ +.... |+..++....++|+++|+||+|+...... . + ...+... + ..++++|||+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~-~~~~l~~~~~~~pvilv~NK~Dl~~~~~~-~--~-~~~~~~~-~-~~~~~~~Sa~ 151 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLS-LFEEIKPLFKNKPVIVVLNKIDLLTFEDL-S--E-IEEEEEL-E-GEEVLKISTL 151 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHH-HHHHHHhhcCcCCeEEEEEccccCchhhH-H--H-HHHhhhh-c-cCceEEEEec
Confidence 46899999999987653 44443 78887765557999999999999765433 1 1 2233322 2 2368999999
Q ss_pred cCCCchHHHHHHHHHH
Q 010548 160 TMIQVPDVFYYAQKAV 175 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i 175 (507)
+|.|++++++++.+.+
T Consensus 152 ~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 152 TEEGVDEVKNKACELL 167 (168)
T ss_pred ccCCHHHHHHHHHHHh
Confidence 9999999999998765
No 134
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.85 E-value=1.7e-20 Score=167.33 Aligned_cols=154 Identities=18% Similarity=0.239 Sum_probs=111.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~ 93 (507)
.|+++|++|||||||++++.+..+.....++...... .+..+++.+.+|||||+..+...+..+++.+|++++|+|++
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 3899999999999999999999876654432221111 12234588999999999988888999999999999999999
Q ss_pred ChhhHHHHHHhHHHHHHh-c-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHH--hcccCcEEEeCcccCCCchHHHH
Q 010548 94 QQSTLSRLSSYWLPELRR-L-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ--FREIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~-~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
+..++..... |+..+.. . ..++|+++|+||+|+.+.... ......+... .....+++++||++|.|++++++
T Consensus 79 ~~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 79 DRTALEAAKN-ELHDLLEKPSLEGIPLLVLGNKNDLPGALSV---DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CHHHHHHHHH-HHHHHHcChhhcCCCEEEEEeCccccCCcCH---HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 9988887765 4444332 1 247899999999998764322 1111111100 11113689999999999999999
Q ss_pred HHHH
Q 010548 170 YAQK 173 (507)
Q Consensus 170 ~i~~ 173 (507)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9864
No 135
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.85 E-value=1e-21 Score=169.15 Aligned_cols=168 Identities=16% Similarity=0.225 Sum_probs=139.9
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhc
Q 010548 4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELK 81 (507)
Q Consensus 4 m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 81 (507)
|.+.....-+|++|+|..+|||||++.|++.+-|...+..++...- ..+.+..+.+++.+|||+|++++......|++
T Consensus 12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr 91 (246)
T KOG4252|consen 12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR 91 (246)
T ss_pred CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 4444556679999999999999999999998888776554222111 22333456778899999999999999999999
Q ss_pred cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (507)
Q Consensus 82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 161 (507)
+|.+.++||+.+|+.||+...+ |.+.+.+....+|.++|-||+|+.++..+ ...+.+.+++.+.. .++.+|++..
T Consensus 92 gaqa~vLVFSTTDr~SFea~~~-w~~kv~~e~~~IPtV~vqNKIDlveds~~--~~~evE~lak~l~~--RlyRtSvked 166 (246)
T KOG4252|consen 92 GAQASVLVFSTTDRYSFEATLE-WYNKVQKETERIPTVFVQNKIDLVEDSQM--DKGEVEGLAKKLHK--RLYRTSVKED 166 (246)
T ss_pred cccceEEEEecccHHHHHHHHH-HHHHHHHHhccCCeEEeeccchhhHhhhc--chHHHHHHHHHhhh--hhhhhhhhhh
Confidence 9999999999999999999997 99999998889999999999999988766 44556777777654 6899999999
Q ss_pred CCchHHHHHHHHHHc
Q 010548 162 IQVPDVFYYAQKAVL 176 (507)
Q Consensus 162 ~gi~~l~~~i~~~i~ 176 (507)
.||..+|.+|+..+.
T Consensus 167 ~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 167 FNVMHVFAYLAEKLT 181 (246)
T ss_pred hhhHHHHHHHHHHHH
Confidence 999999999988764
No 136
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3.8e-21 Score=169.67 Aligned_cols=86 Identities=28% Similarity=0.464 Sum_probs=83.0
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
.++.|||++||++|||||||+.||.++.|...|..|+|+++..+.+.+.|+.++++|||||||+||+++. .+|||+||
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit--~syYR~ah 83 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTIT--SSYYRGAH 83 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhh--HhhccCCC
Confidence 4578999999999999999999999999999999999999999999999999999999999999999998 79999999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
+||+|||+
T Consensus 84 Gii~vyDi 91 (205)
T KOG0084|consen 84 GIIFVYDI 91 (205)
T ss_pred eEEEEEEc
Confidence 99999996
No 137
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.84 E-value=3.7e-20 Score=168.59 Aligned_cols=155 Identities=17% Similarity=0.221 Sum_probs=111.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
..+.+||+++|++|||||||++++.+..+....++. +.+. ..+...+..+.+|||+|...+...+..+++.+|++++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~--g~~~-~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDISHITPTQ--GFNI-KTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCC--Ccce-EEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 345799999999999999999999987653322221 1111 1222346889999999988888888889999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc------cCcEEEeCcccC
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE------IETCVECSATTM 161 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~SA~~g 161 (507)
|+|+++..++......+...++.. ..++|+++++||+|+...... ..+...++. ..+++++||++|
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-------~~i~~~l~~~~~~~~~~~~~~~Sa~~~ 160 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPA-------EEIAEALNLHDLRDRTWHIQACSAKTG 160 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCH-------HHHHHHcCCcccCCCeEEEEEeECCCC
Confidence 999999888887765333333321 236999999999998654222 112222221 114789999999
Q ss_pred CCchHHHHHHHH
Q 010548 162 IQVPDVFYYAQK 173 (507)
Q Consensus 162 ~gi~~l~~~i~~ 173 (507)
.|++++|++|.+
T Consensus 161 ~gi~~~~~~l~~ 172 (173)
T cd04155 161 EGLQEGMNWVCK 172 (173)
T ss_pred CCHHHHHHHHhc
Confidence 999999999865
No 138
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.84 E-value=6.1e-20 Score=166.49 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCc-eEEEEEeCCCCcc----chhhhHH---hhcc
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDR-VPVTIIDTSSSLE----NKGKLNE---ELKR 82 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~-~~~~i~Dt~G~~~----~~~~~~~---~~~~ 82 (507)
.|+++|++|||||||+|+|.+.... +...+..|.. ..+...+ ..+.+|||||+.+ ...+... .++.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~---v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK---IADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc---ccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence 5899999999999999999976531 1111112211 1122233 4899999999742 2222333 3456
Q ss_pred CCEEEEEEeCCCh-hhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548 83 ADAVVLTYACNQQ-STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (507)
Q Consensus 83 ad~il~V~D~~~~-~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (507)
+|++++|+|++++ .+++.+.. |.+.+.... .++|+++|+||+|+...... .+....+..... ..+++++||
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~~~~~~~~~~-~~~~~~~Sa 153 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKT-IRNELELYNPELLEKPRIVVLNKIDLLDEEEL---FELLKELLKELW-GKPVFPISA 153 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHH-HHHHHHHhCccccccccEEEEEchhcCCchhh---HHHHHHHHhhCC-CCCEEEEec
Confidence 9999999999999 78888875 888877653 36899999999998764333 222333333321 136899999
Q ss_pred ccCCCchHHHHHHHHH
Q 010548 159 TTMIQVPDVFYYAQKA 174 (507)
Q Consensus 159 ~~g~gi~~l~~~i~~~ 174 (507)
+++.|+++++++|.+.
T Consensus 154 ~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 154 LTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999998764
No 139
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.84 E-value=8.8e-20 Score=178.20 Aligned_cols=162 Identities=18% Similarity=0.183 Sum_probs=111.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccchh--------hhHHhhcc
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKG--------KLNEELKR 82 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ 82 (507)
+|+++|+||||||||+|+|++.++. ..+..+++|.. ......+.++.+|||||...... ....+++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~--~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS--ITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe--ecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6999999999999999999998742 22222333311 12223456799999999764321 12356899
Q ss_pred CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (507)
Q Consensus 83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 162 (507)
+|++++|+|+++..+.. ..+...++.. ++|+++|+||+|+..... .......+....+ ..+++++||++|.
T Consensus 80 aDvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~-~~~v~~iSA~~g~ 150 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKDK---LLPLIDKYAILED-FKDIVPISALTGD 150 (270)
T ss_pred CCEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHHH---HHHHHHHHHhhcC-CCceEEEecCCCC
Confidence 99999999999876664 2366666665 799999999999964321 1222333333332 2368999999999
Q ss_pred CchHHHHHHHHHHcCCCCCCCccch
Q 010548 163 QVPDVFYYAQKAVLHPTAPLFDHDE 187 (507)
Q Consensus 163 gi~~l~~~i~~~i~~~~~~~~~~~~ 187 (507)
|++++++.|.+.+.. .++.+....
T Consensus 151 gi~~L~~~l~~~l~~-~~~~~~~~~ 174 (270)
T TIGR00436 151 NTSFLAAFIEVHLPE-GPFRYPEDY 174 (270)
T ss_pred CHHHHHHHHHHhCCC-CCCCCCCcc
Confidence 999999999887633 334454433
No 140
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.83 E-value=4.4e-20 Score=166.13 Aligned_cols=158 Identities=16% Similarity=0.063 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCc---ccCC-ceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPD---FYPD-RVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~---~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
+.|+++|++|||||||+++|++...........+++|+... +... +..+.+|||||++.+......+++.+|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 36899999999999999999974311111111112221111 1122 6789999999998887767778899999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc-ccCcEEEeCcccCCCchHH
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSATTMIQVPDV 167 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l 167 (507)
|+|+++....+... .+..++... .+|+++|+||+|+....................+ ...+++++||++|.|++++
T Consensus 81 V~d~~~~~~~~~~~--~~~~~~~~~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 81 VVAADEGIMPQTRE--HLEILELLG-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEEL 157 (164)
T ss_pred EEECCCCccHhHHH--HHHHHHHhC-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHH
Confidence 99998732111111 222233331 3499999999999754211001122222222210 1237999999999999999
Q ss_pred HHHHHH
Q 010548 168 FYYAQK 173 (507)
Q Consensus 168 ~~~i~~ 173 (507)
++.+.+
T Consensus 158 ~~~l~~ 163 (164)
T cd04171 158 KEYLDE 163 (164)
T ss_pred HHHHhh
Confidence 998754
No 141
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=1.9e-19 Score=170.24 Aligned_cols=158 Identities=17% Similarity=0.209 Sum_probs=117.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchhh--------hHH
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGK--------LNE 78 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~ 78 (507)
++.-.|+|+|+||||||||+|++++.+ .++.+..+.+| +..-+..++.++.++||||..+.... ...
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~K--isIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQK--ISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCc--eEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 344679999999999999999999999 66666666666 44445566889999999998754332 235
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (507)
Q Consensus 79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (507)
.+.++|+++||+|++.+....+ +..++.+++. +.|+++++||+|....... .......+...+. ...++++||
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~~--~~pvil~iNKID~~~~~~~--l~~~~~~~~~~~~-f~~ivpiSA 154 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGD--EFILEQLKKT--KTPVILVVNKIDKVKPKTV--LLKLIAFLKKLLP-FKEIVPISA 154 (298)
T ss_pred HhccCcEEEEEEeccccCCccH--HHHHHHHhhc--CCCeEEEEEccccCCcHHH--HHHHHHHHHhhCC-cceEEEeec
Confidence 7899999999999998644433 3366667663 7899999999998765432 1222333333333 337899999
Q ss_pred ccCCCchHHHHHHHHHHc
Q 010548 159 TTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 159 ~~g~gi~~l~~~i~~~i~ 176 (507)
++|.|++.|.+.+...+.
T Consensus 155 ~~g~n~~~L~~~i~~~Lp 172 (298)
T COG1159 155 LKGDNVDTLLEIIKEYLP 172 (298)
T ss_pred cccCCHHHHHHHHHHhCC
Confidence 999999999999887753
No 142
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.83 E-value=2.7e-20 Score=169.84 Aligned_cols=159 Identities=16% Similarity=0.262 Sum_probs=119.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+.+||+++|..|+|||||++++..+......|+..... ..+...++.+.+||.+|+..++..++.+++.+|++|||
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~---~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfV 88 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNI---EEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFV 88 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEE---EEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCccccccc---ceeeeCcEEEEEEeccccccccccceeeccccceeEEE
Confidence 678999999999999999999999766433233221111 12334678999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHH--HHhc--ccCcEEEeCcccCCCc
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM--QQFR--EIETCVECSATTMIQV 164 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~SA~~g~gi 164 (507)
+|+++.+.+......+...+... ..++|+++++||+|+.+.... +++.... ..+. ....++.|||.+|+|+
T Consensus 89 vDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~----~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 89 VDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSE----EEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTH----HHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred EecccceeecccccchhhhcchhhcccceEEEEeccccccCcchh----hHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 99999988888877555555432 247999999999998765322 1122111 1121 2236899999999999
Q ss_pred hHHHHHHHHHH
Q 010548 165 PDVFYYAQKAV 175 (507)
Q Consensus 165 ~~l~~~i~~~i 175 (507)
.+.++||.+.+
T Consensus 165 ~e~l~WL~~~~ 175 (175)
T PF00025_consen 165 DEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999998764
No 143
>PRK15494 era GTPase Era; Provisional
Probab=99.83 E-value=1.5e-19 Score=181.45 Aligned_cols=168 Identities=19% Similarity=0.223 Sum_probs=113.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccc-hhh----h---HH
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLEN-KGK----L---NE 78 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~-~~~----~---~~ 78 (507)
.+.++|+++|++|||||||+|+|++.++... +..+.+| +...+..++.++.+|||||+.+. ..+ . ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~iv--s~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIV--TPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeec--cCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 3456999999999999999999999876321 1122222 11223345678999999998532 221 1 13
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (507)
Q Consensus 79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (507)
+++.||++|+|+|.++ ++......|+..++.. +.|+++|+||+|+... . . ...............++++||
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-~---~-~~~~~~l~~~~~~~~i~~iSA 198 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK-Y---L-NDIKAFLTENHPDSLLFPISA 198 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-c---H-HHHHHHHHhcCCCcEEEEEec
Confidence 5789999999999765 3555544477777665 6788899999998643 1 1 223333333332236899999
Q ss_pred ccCCCchHHHHHHHHHHcCCCCCCCccchhc
Q 010548 159 TTMIQVPDVFYYAQKAVLHPTAPLFDHDEQT 189 (507)
Q Consensus 159 ~~g~gi~~l~~~i~~~i~~~~~~~~~~~~~~ 189 (507)
++|.|+++++++|.+.+. +.++.|......
T Consensus 199 ktg~gv~eL~~~L~~~l~-~~~~~~~~~~~t 228 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAK-ISPWLYAEDDIT 228 (339)
T ss_pred cCccCHHHHHHHHHHhCC-CCCCCCCCCCCC
Confidence 999999999999988764 344555544433
No 144
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.83 E-value=1e-19 Score=164.58 Aligned_cols=154 Identities=17% Similarity=0.125 Sum_probs=106.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccC---CceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYP---DRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
.|+|+|++|||||||+++|.+..+.....+ ..+.. ..+.. .+..+.+|||||+..+...+..+++.+|+++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il 78 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAG---GITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAI 78 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCC---CeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEE
Confidence 589999999999999999998876543211 11211 11122 3678999999999888888888899999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHH----HhcccCcEEEeCcccCCC
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ----QFREIETCVECSATTMIQ 163 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~SA~~g~g 163 (507)
+|+|+++....+... .+..++.. ++|+++|+||+|+...... ........+.. ..+...+++++||++|.|
T Consensus 79 ~v~d~~~~~~~~~~~--~~~~~~~~--~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (168)
T cd01887 79 LVVAADDGVMPQTIE--AIKLAKAA--NVPFIVALNKIDKPNANPE-RVKNELSELGLQGEDEWGGDVQIVPTSAKTGEG 153 (168)
T ss_pred EEEECCCCccHHHHH--HHHHHHHc--CCCEEEEEEceecccccHH-HHHHHHHHhhccccccccCcCcEEEeecccCCC
Confidence 999999854333222 33344444 7899999999998753211 11122222211 122234799999999999
Q ss_pred chHHHHHHHHHH
Q 010548 164 VPDVFYYAQKAV 175 (507)
Q Consensus 164 i~~l~~~i~~~i 175 (507)
+.+++++|.+..
T Consensus 154 i~~l~~~l~~~~ 165 (168)
T cd01887 154 IDDLLEAILLLA 165 (168)
T ss_pred HHHHHHHHHHhh
Confidence 999999998753
No 145
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.82 E-value=4.6e-20 Score=162.35 Aligned_cols=135 Identities=18% Similarity=0.196 Sum_probs=96.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCc-----cchhhhHHhhccCCEEEE
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL-----ENKGKLNEELKRADAVVL 88 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~-----~~~~~~~~~~~~ad~il~ 88 (507)
||+++|++|||||||+|+|++..+. +.+ |...++. -.+|||||.. .+..+. ..++++|++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~-----t~~~~~~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vil 68 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKK-----TQAVEYN-----DGAIDTPGEYVENRRLYSALI-VTAADADVIAL 68 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccc-----ceeEEEc-----CeeecCchhhhhhHHHHHHHH-HHhhcCCEEEE
Confidence 8999999999999999999987642 221 2222222 1689999973 122222 35899999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
|||++++.++... .|...+ ..|+++|+||+|+.+. .. ..+....+.+..+. .+++++||++|.|++++|
T Consensus 69 v~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~-~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 69 VQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEA-DV--DIERAKELLETAGA-EPIFEISSVDEQGLEALV 137 (142)
T ss_pred EecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCc-cc--CHHHHHHHHHHcCC-CcEEEEecCCCCCHHHHH
Confidence 9999999887653 254432 3599999999998653 22 22334455555443 268999999999999999
Q ss_pred HHHH
Q 010548 169 YYAQ 172 (507)
Q Consensus 169 ~~i~ 172 (507)
+++.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 8874
No 146
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=2.3e-19 Score=178.85 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc---c-CCceEEEEEeCCCCccch----h---hhHHhhc
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF---Y-PDRVPVTIIDTSSSLENK----G---KLNEELK 81 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~---~-~~~~~~~i~Dt~G~~~~~----~---~~~~~~~ 81 (507)
..|+|||.||||||||+|+|++.+. . ....+.+|....+ . .+..++.+|||||+.+.. . .+..+++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~--~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie 235 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP--K-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIE 235 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC--c-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence 4699999999999999999998652 2 1222233422221 1 245679999999975321 1 2234677
Q ss_pred cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCC---CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (507)
Q Consensus 82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (507)
.++++|+|+|+++..+++++.. |..++..+.+ ++|+++|+||+|+...... ..+....+....+ .++++|||
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~-~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~--~~~~~~~~~~~~~--~~i~~iSA 310 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKT-IRNELEKYSPELADKPRILVLNKIDLLDEEEE--REKRAALELAALG--GPVFLISA 310 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHH-HHHHHHHhhhhcccCCeEEEEECcccCCchhH--HHHHHHHHHHhcC--CCEEEEEc
Confidence 8999999999998888888875 8888877542 6899999999999764332 1222333333333 26899999
Q ss_pred ccCCCchHHHHHHHHHHc
Q 010548 159 TTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 159 ~~g~gi~~l~~~i~~~i~ 176 (507)
+++.||++++++|.+.+.
T Consensus 311 ktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 311 VTGEGLDELLRALWELLE 328 (335)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 147
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.81 E-value=5.6e-20 Score=161.80 Aligned_cols=145 Identities=17% Similarity=0.207 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccchh------hhHHhh--c
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKG------KLNEEL--K 81 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~ 81 (507)
++|+++|.||||||||||+|++.+.. .+..+++|.. ..+...+..+.++|+||...... ....++ .
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~---v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~ 77 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQK---VGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSE 77 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEE---EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCce---ecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhc
Confidence 58999999999999999999998832 2334445522 33444568999999999643222 223343 6
Q ss_pred cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (507)
Q Consensus 82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 161 (507)
..|++++|+|+++.+ .++ ++..++.+. ++|+++|+||+|....... . .....+.+.++. |++++||+++
T Consensus 78 ~~D~ii~VvDa~~l~--r~l--~l~~ql~e~--g~P~vvvlN~~D~a~~~g~-~--id~~~Ls~~Lg~--pvi~~sa~~~ 146 (156)
T PF02421_consen 78 KPDLIIVVVDATNLE--RNL--YLTLQLLEL--GIPVVVVLNKMDEAERKGI-E--IDAEKLSERLGV--PVIPVSARTG 146 (156)
T ss_dssp SSSEEEEEEEGGGHH--HHH--HHHHHHHHT--TSSEEEEEETHHHHHHTTE-E--E-HHHHHHHHTS---EEEEBTTTT
T ss_pred CCCEEEEECCCCCHH--HHH--HHHHHHHHc--CCCEEEEEeCHHHHHHcCC-E--ECHHHHHHHhCC--CEEEEEeCCC
Confidence 899999999998753 222 255666666 7999999999998765443 2 235667777774 7999999999
Q ss_pred CCchHHHHHH
Q 010548 162 IQVPDVFYYA 171 (507)
Q Consensus 162 ~gi~~l~~~i 171 (507)
+|++++++.|
T Consensus 147 ~g~~~L~~~I 156 (156)
T PF02421_consen 147 EGIDELKDAI 156 (156)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHhhC
Confidence 9999999875
No 148
>PLN00023 GTP-binding protein; Provisional
Probab=99.81 E-value=2.8e-19 Score=173.92 Aligned_cols=141 Identities=23% Similarity=0.270 Sum_probs=110.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCccc-------------CCceEEEEEeCCCCccc
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFY-------------PDRVPVTIIDTSSSLEN 72 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~~-------------~~~~~~~i~Dt~G~~~~ 72 (507)
.....+||+|+|+.|||||||+++|+++.|...+.++... .. ..+.+. ...+.+.||||+|++.+
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 3456799999999999999999999999887665444322 21 112221 24578999999999999
Q ss_pred hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-------------CCCcEEEEEecccCCCCCC--cc--c
Q 010548 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-------------IKVPIIVAGCKLDLRGDHN--AT--S 135 (507)
Q Consensus 73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-------------~~~piilv~NK~Dl~~~~~--~~--~ 135 (507)
..++..+++.+|++|+|||++++.+++++.. |++.+.... .++|++|||||+|+...+. .. .
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~k-Wl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~ 175 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN 175 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence 9999999999999999999999999999986 999988652 2589999999999976432 10 1
Q ss_pred hhhhhHHHHHHhcc
Q 010548 136 LEEVMGPIMQQFRE 149 (507)
Q Consensus 136 ~~~~~~~~~~~~~~ 149 (507)
..+.+..++++.+.
T Consensus 176 ~~e~a~~~A~~~g~ 189 (334)
T PLN00023 176 LVDAARQWVEKQGL 189 (334)
T ss_pred cHHHHHHHHHHcCC
Confidence 35677888887764
No 149
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=5.7e-19 Score=176.05 Aligned_cols=159 Identities=21% Similarity=0.227 Sum_probs=125.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchh-----------hh
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKG-----------KL 76 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~ 76 (507)
..+||+|+|+||||||||+|+|++.. ..+....+++| +...+..++.++.++||+|..+-.. ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgee--R~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEE--RVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCc--eEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 46999999999999999999999988 66777777777 5566667789999999999753221 22
Q ss_pred HHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc--CcEE
Q 010548 77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI--ETCV 154 (507)
Q Consensus 77 ~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 154 (507)
..++..||++++|+|++.+.+-++.. +...+.+. ++++++|.||.|+...... ..++....+...++.. .+.+
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~--ia~~i~~~--g~~~vIvvNKWDl~~~~~~-~~~~~k~~i~~~l~~l~~a~i~ 329 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLR--IAGLIEEA--GRGIVIVVNKWDLVEEDEA-TMEEFKKKLRRKLPFLDFAPIV 329 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHH--HHHHHHHc--CCCeEEEEEccccCCchhh-HHHHHHHHHHHHhccccCCeEE
Confidence 36889999999999999997776655 88888887 8999999999999876333 3333334444444432 3789
Q ss_pred EeCcccCCCchHHHHHHHHHHc
Q 010548 155 ECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 155 ~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
.+||++|.|+.++|+.+.+...
T Consensus 330 ~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 330 FISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred EEEecCCCChHHHHHHHHHHHH
Confidence 9999999999999999987653
No 150
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.80 E-value=9.7e-19 Score=165.62 Aligned_cols=167 Identities=25% Similarity=0.394 Sum_probs=126.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCccc--CCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY--PDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
..+||+++|++|||||||+++|.++.+...++++...-....... ...+++.+|||+|++++...+..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 348999999999999999999999998877665433222221221 226889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCcc----------chhhhhHHHHHHh--cccCcEEE
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNAT----------SLEEVMGPIMQQF--REIETCVE 155 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~----------~~~~~~~~~~~~~--~~~~~~~~ 155 (507)
|+|.++..++..+...|...++.... +.|+++|+||+|+....... ............. ... .+++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 162 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANP-ALLE 162 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccc-ceeE
Confidence 99999977777777779999988763 69999999999998864210 0111111111111 222 3899
Q ss_pred eCcc--cCCCchHHHHHHHHHHcCC
Q 010548 156 CSAT--TMIQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 156 ~SA~--~g~gi~~l~~~i~~~i~~~ 178 (507)
+||+ .+.+|.++|..+.+.+...
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHHh
Confidence 9999 9999999999998877543
No 151
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.80 E-value=1.2e-18 Score=154.85 Aligned_cols=155 Identities=17% Similarity=0.224 Sum_probs=113.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC--CcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP--PDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+||+++|.+|+|||||++++.+..+.....+........ .......+.+.+|||||+..+........+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3799999999999999999999988544433211111122 12222237899999999988888888889999999999
Q ss_pred EeCCCh-hhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 90 YACNQQ-STLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 90 ~D~~~~-~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
+|.... .++......|...+..... +.|+++|+||+|+.... ............+.. +++++||++|.|+.++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~-~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK----LKTHVAFLFAKLNGE-PIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch----hhHHHHHHHhhccCC-ceEEeecCCCCCHHHH
Confidence 999887 6676665446666665544 78999999999997643 122333333444433 6999999999999999
Q ss_pred HHHH
Q 010548 168 FYYA 171 (507)
Q Consensus 168 ~~~i 171 (507)
+++|
T Consensus 156 ~~~l 159 (161)
T TIGR00231 156 FKIV 159 (161)
T ss_pred HHHh
Confidence 9886
No 152
>PRK04213 GTP-binding protein; Provisional
Probab=99.80 E-value=3.5e-19 Score=166.47 Aligned_cols=155 Identities=19% Similarity=0.189 Sum_probs=100.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC-cccCCceEEEEEeCCCC-----------ccchhhh
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP-DFYPDRVPVTIIDTSSS-----------LENKGKL 76 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~i~Dt~G~-----------~~~~~~~ 76 (507)
....++|+++|++|||||||+|+|.+..+.... .++++... .+... .+.+|||||. +.+...+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~---~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGK---RPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCC---CCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 445689999999999999999999987754322 22333221 12122 6899999994 3344444
Q ss_pred HHhh----ccCCEEEEEEeCCChhhHH---------HHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHH
Q 010548 77 NEEL----KRADAVVLTYACNQQSTLS---------RLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI 143 (507)
Q Consensus 77 ~~~~----~~ad~il~V~D~~~~~s~~---------~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 143 (507)
..++ ..++++++|+|.++..... .....+...+... ++|+++|+||+|+.+.. .+....+
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~-----~~~~~~~ 153 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL--GIPPIVAVNKMDKIKNR-----DEVLDEI 153 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc--CCCeEEEEECccccCcH-----HHHHHHH
Confidence 4444 3467888999876532210 0111133444443 79999999999986532 2234445
Q ss_pred HHHhccc-------CcEEEeCcccCCCchHHHHHHHHHHc
Q 010548 144 MQQFREI-------ETCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 144 ~~~~~~~-------~~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
...++.. .++++|||++| |+++++++|.+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 5555421 14799999999 99999999988764
No 153
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=5e-19 Score=186.04 Aligned_cols=157 Identities=19% Similarity=0.115 Sum_probs=109.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCcc----------chhh-h
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLE----------NKGK-L 76 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~----------~~~~-~ 76 (507)
..+||+|+|++|||||||+|+|++..+. .....+++|. ...+..++..+.+|||||... +... .
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~--~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS--VVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc--cccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999988742 1222233331 122334566789999999632 1111 1
Q ss_pred HHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcEE
Q 010548 77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCV 154 (507)
Q Consensus 77 ~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 154 (507)
..+++.||++|+|+|++++.++.++. ++..+... ++|+|+|+||+|+...... ......+...+.. ..+++
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~--~~~~~~~~--~~piIiV~NK~Dl~~~~~~---~~~~~~i~~~l~~~~~~~~~ 360 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR--VLSMVIEA--GRALVLAFNKWDLVDEDRR---YYLEREIDRELAQVPWAPRV 360 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCChhHH---HHHHHHHHHhcccCCCCCEE
Confidence 24678999999999999998888875 66666654 7999999999999753211 1111222222221 24789
Q ss_pred EeCcccCCCchHHHHHHHHHHc
Q 010548 155 ECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 155 ~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
+|||++|.||+++|+.+.+.+.
T Consensus 361 ~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 361 NISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988653
No 154
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.80 E-value=7.5e-19 Score=161.97 Aligned_cols=158 Identities=19% Similarity=0.153 Sum_probs=112.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-------------CCeeeC---CcccCCceEEEEEeCCCCccchhhhH
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-------------APTRLP---PDFYPDRVPVTIIDTSSSLENKGKLN 77 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-------------~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~ 77 (507)
+|+|+|.+|+|||||+|+|++........... .+.+.. ..+...+..+.+|||||...+.....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 48999999999999999999887644332211 111111 12223467899999999988888888
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc---------
Q 010548 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--------- 148 (507)
Q Consensus 78 ~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--------- 148 (507)
.+++.+|++++|+|++++.+..... ++..++.. ++|+++|+||+|+.................+..+
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~--~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTRE--HLRIAREG--GLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHH--HHHHHHHC--CCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 8999999999999999876554433 55555553 7999999999999863222011222333333322
Q ss_pred ---ccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548 149 ---EIETCVECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 149 ---~~~~~~~~SA~~g~gi~~l~~~i~~~i 175 (507)
...+++++||++|.|++++++++.+.+
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 134789999999999999999998876
No 155
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.80 E-value=7.6e-19 Score=164.58 Aligned_cols=154 Identities=21% Similarity=0.198 Sum_probs=105.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceEEEEEeCCCCccch--hh------hHHh
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK--GK------LNEE 79 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~--~~------~~~~ 79 (507)
...++|+|+|++|||||||+|++++..+... ..++.........+ .+...+.+|||||..... .. ....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL-PDGREVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe-cCCceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 3457999999999999999999998764221 11111111111222 123489999999973211 11 1123
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (507)
Q Consensus 80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (507)
+..+|++++|+|++++.++..... |.+.++... .++|+++|+||+|+...... . ...... ..+++++||
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~----~---~~~~~~--~~~~~~~Sa 187 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIET-VEKVLKELGAEDIPMILVLNKIDLLDDEEL----E---ERLEAG--RPDAVFISA 187 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHH-HHHHHHHcCcCCCCEEEEEEccccCChHHH----H---HHhhcC--CCceEEEEc
Confidence 678999999999999988877654 777776643 36899999999999764322 1 122222 236899999
Q ss_pred ccCCCchHHHHHHHHH
Q 010548 159 TTMIQVPDVFYYAQKA 174 (507)
Q Consensus 159 ~~g~gi~~l~~~i~~~ 174 (507)
++|.|+++++++|.+.
T Consensus 188 ~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 188 KTGEGLDELLEAIEEL 203 (204)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999998764
No 156
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.79 E-value=1.5e-18 Score=161.26 Aligned_cols=150 Identities=14% Similarity=0.144 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--CCCCCCCC--CC---------CCCee---eCCcccCCceEEEEEeCCCCccchhhh
Q 010548 13 VRVVVVGDRGTGKSSLIAAAAT--ESVPEKVP--PV---------HAPTR---LPPDFYPDRVPVTIIDTSSSLENKGKL 76 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~--~~~~~~~~--~~---------~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 76 (507)
.+|+++|++|||||||+++|+. +.+..... .. ..+.+ ....+..+++.+.+|||||++++....
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 44433321 00 01111 112344567899999999999999999
Q ss_pred HHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc-----cC
Q 010548 77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-----IE 151 (507)
Q Consensus 77 ~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~ 151 (507)
..+++.+|++++|+|+++... .... .++..+... ++|+++|+||+|+...+.. ...+....+...++. -.
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~~-~~~~-~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGPM-PQTR-FVLKKALEL--GLKPIVVINKIDRPDARPE-EVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCcc-HHHH-HHHHHHHHc--CCCEEEEEECCCCCCCCHH-HHHHHHHHHHHHhCCccccCcc
Confidence 999999999999999988532 2222 244544444 7899999999999754322 122333333322211 12
Q ss_pred cEEEeCcccCCCchHH
Q 010548 152 TCVECSATTMIQVPDV 167 (507)
Q Consensus 152 ~~~~~SA~~g~gi~~l 167 (507)
+++++||++|.|+.++
T Consensus 158 ~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 158 PVLYASAKNGWASLNL 173 (194)
T ss_pred CEEEeehhcccccccc
Confidence 7899999999887554
No 157
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.79 E-value=1.7e-18 Score=154.86 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=101.7
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccchh------hhHHhhc--cCCE
Q 010548 17 VVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKG------KLNEELK--RADA 85 (507)
Q Consensus 17 ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~--~ad~ 85 (507)
|+|++|||||||+|++++..+.... .+++|.. ..+...+..+.+|||||+..+.. +...++. .+|+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGN---WPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDL 77 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccC---CCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcE
Confidence 5899999999999999987633221 1222211 12333457899999999876554 2445554 9999
Q ss_pred EEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 86 il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
+++|+|+++..... .|...+.+. ++|+++|+||+|+.+.... ......+...++. +++++||++|.|+.
T Consensus 78 vi~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~---~~~~~~~~~~~~~--~~~~iSa~~~~~~~ 146 (158)
T cd01879 78 IVNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKRGI---KIDLDKLSELLGV--PVVPTSARKGEGID 146 (158)
T ss_pred EEEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhcccccc---hhhHHHHHHhhCC--CeEEEEccCCCCHH
Confidence 99999998864422 255555554 7999999999999765433 1223455555553 69999999999999
Q ss_pred HHHHHHHHH
Q 010548 166 DVFYYAQKA 174 (507)
Q Consensus 166 ~l~~~i~~~ 174 (507)
++++.+.+.
T Consensus 147 ~l~~~l~~~ 155 (158)
T cd01879 147 ELKDAIAEL 155 (158)
T ss_pred HHHHHHHHH
Confidence 999998775
No 158
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.79 E-value=1.1e-18 Score=175.42 Aligned_cols=152 Identities=20% Similarity=0.189 Sum_probs=105.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCC-CCC-CCCCCeeeCCcccCCceEEEEEeCCCCcc--chhhh------HHhh
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPE-KVP-PVHAPTRLPPDFYPDRVPVTIIDTSSSLE--NKGKL------NEEL 80 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~-~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~--~~~~~------~~~~ 80 (507)
..++|+++|.+|||||||+|+|++..+.. ..+ ++...++....+ .++..+.+|||+|... ..... ...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~-~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDL-PDGGEVLLTDTVGFIRDLPHELVAAFRATLEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEe-CCCceEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence 34899999999999999999999976422 222 222223322222 2456899999999732 11111 1357
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 81 ~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
..||++++|+|++++.+.+.+.. |...++... .++|+++|+||+|+...... ...... ..++++|||+
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-------~~~~~~---~~~~i~iSAk 335 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEA-VEKVLEELGAEDIPQLLVYNKIDLLDEPRI-------ERLEEG---YPEAVFVSAK 335 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHH-HHHHHHHhccCCCCEEEEEEeecCCChHhH-------HHHHhC---CCCEEEEEcc
Confidence 89999999999999988877654 666665543 37899999999998653211 111111 1258999999
Q ss_pred cCCCchHHHHHHHHH
Q 010548 160 TMIQVPDVFYYAQKA 174 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~ 174 (507)
+|.|++++++.|.+.
T Consensus 336 tg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 336 TGEGLDLLLEAIAER 350 (351)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999998653
No 159
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.79 E-value=4.1e-19 Score=150.57 Aligned_cols=85 Identities=27% Similarity=0.420 Sum_probs=81.5
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||++||.+|||||||+.+|+.+.|....+.|+|.+|.++.+.++|+..++-|||||||+||+++. +.|||+|.+
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLT--pSyyRgaqG 86 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLT--PSYYRGAQG 86 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccC--HhHhccCce
Confidence 456999999999999999999999999999999999999999999999999999999999999999998 799999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+|+|||+
T Consensus 87 iIlVYDV 93 (209)
T KOG0080|consen 87 IILVYDV 93 (209)
T ss_pred eEEEEEc
Confidence 9999996
No 160
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.79 E-value=1.6e-18 Score=169.33 Aligned_cols=227 Identities=13% Similarity=0.116 Sum_probs=156.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCC--------------eeeC---CcccCCceEEEEEeCCCCccchhh
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAP--------------TRLP---PDFYPDRVPVTIIDTSSSLENKGK 75 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~-~~~~--------------~t~~---~~~~~~~~~~~i~Dt~G~~~~~~~ 75 (507)
+|+|+|++|+|||||+++|+.......... ...+ .++. ..+.++++.+.+|||||...+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 589999999999999999986432211110 0011 1111 123356789999999998887777
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEE
Q 010548 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE 155 (507)
Q Consensus 76 ~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (507)
...+++.+|++++|+|++++....... .+..+... ++|+++++||+|+... ........+...++..+-.+.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~--~~~~~~~~--~~p~iivvNK~D~~~~----~~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEK--LWEFADEA--GIPRIIFINKMDRERA----DFDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECCccCCC----CHHHHHHHHHHHhCCCeEEEE
Confidence 888999999999999999876554333 34445555 7899999999998764 234455666666765333466
Q ss_pred eCcccCCCchHHHHHHHHHHcCCCC-CCC-----ccchhcccHHHHHHHHHHHhhccCC------CCCccChhhhHHHHh
Q 010548 156 CSATTMIQVPDVFYYAQKAVLHPTA-PLF-----DHDEQTLKPRCVRALKRIFIICDHD------MDGALNDAELNEFQV 223 (507)
Q Consensus 156 ~SA~~g~gi~~l~~~i~~~i~~~~~-~~~-----~~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~~~el~~~~~ 223 (507)
++..+|.|+..+.+.+......... ... .........+++..|.+.....|+. +++.++.+|+....+
T Consensus 153 ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~ 232 (268)
T cd04170 153 LPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLR 232 (268)
T ss_pred ecccCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 7789999998888777665432211 000 0111112234455555555666654 578899999998888
Q ss_pred H----------hcCCCCCHHHHHHHHHHHHhhccC
Q 010548 224 K----------CFNAPLQPAEIVGVKRVVQEKQHD 248 (507)
Q Consensus 224 ~----------~~~~~l~~~~~~~l~~~i~~~~~~ 248 (507)
+ +++++....|++.+++.+.+.+|+
T Consensus 233 ~~~~~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~ 267 (268)
T cd04170 233 RALRAGLLVPVLCGSALTNIGVRELLDALVHLLPS 267 (268)
T ss_pred HHHHhCCEEEEEEeeCCCCcCHHHHHHHHHHhCCC
Confidence 6 899999999999999999999885
No 161
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=4.1e-18 Score=154.46 Aligned_cols=156 Identities=22% Similarity=0.198 Sum_probs=106.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchh-----------hhH
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKG-----------KLN 77 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~ 77 (507)
.++|+++|++|+|||||+|+|++..+... ...++++ ....+...+..+.+|||||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV--SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec--cCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 47999999999999999999998763221 1111122 1122333456789999999753310 112
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcEEE
Q 010548 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVE 155 (507)
Q Consensus 78 ~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 155 (507)
.+++.+|++++|+|++++.+..... +...+... ++|+++|+||+|+...... ........+...++. ..++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~~--~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR--IAGLILEE--GKALVIVVNKWDLVEKDSK-TMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH--HHHHHHhc--CCCEEEEEeccccCCccHH-HHHHHHHHHHhhcccccCCceEE
Confidence 4578999999999999987766543 55555544 6899999999999765322 222223344444432 237999
Q ss_pred eCcccCCCchHHHHHHHHH
Q 010548 156 CSATTMIQVPDVFYYAQKA 174 (507)
Q Consensus 156 ~SA~~g~gi~~l~~~i~~~ 174 (507)
+||+++.|++++++.+.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999998764
No 162
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.78 E-value=1.4e-18 Score=155.80 Aligned_cols=140 Identities=17% Similarity=0.173 Sum_probs=97.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccch----hhhHHhhccCCEEEEE
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK----GKLNEELKRADAVVLT 89 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~ad~il~V 89 (507)
+|+++|++|||||||+|+|.+... .. . .+....+... .+|||||..... ......++++|++++|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~--~----~~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v 71 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LA--R----KTQAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYV 71 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cC--c----cceEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEE
Confidence 799999999999999999886541 11 1 1111222222 269999973222 2223457899999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
+|+++..++.. . |+..+ ..++|+++++||+|+.... .+....+.++.+...+++++||++|.|++++|+
T Consensus 72 ~d~~~~~s~~~--~-~~~~~---~~~~~ii~v~nK~Dl~~~~-----~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 72 HGANDPESRLP--A-GLLDI---GVSKRQIAVISKTDMPDAD-----VAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EeCCCcccccC--H-HHHhc---cCCCCeEEEEEccccCccc-----HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 99998876532 1 33332 2368999999999986521 233445555665434899999999999999999
Q ss_pred HHHHHH
Q 010548 170 YAQKAV 175 (507)
Q Consensus 170 ~i~~~i 175 (507)
.+.+.+
T Consensus 141 ~l~~~~ 146 (158)
T PRK15467 141 YLASLT 146 (158)
T ss_pred HHHHhc
Confidence 998765
No 163
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.78 E-value=5.4e-18 Score=144.72 Aligned_cols=162 Identities=14% Similarity=0.188 Sum_probs=119.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+.++|.|+|..|+||||++++|.+.......|+.....+ ....+++++++||.+|+...++.++.|+..+|++|+|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Ik---tl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIK---TLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeE---EEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 4589999999999999999999998773222222111111 2335689999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchh--hhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLE--EVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
+|++++..+++....+...+... -.+.|+++++||.|+...-...... .....+++... .+++.|||.+|+++.+
T Consensus 91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~--~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH--WRLVKCSAVTGEDLLE 168 (185)
T ss_pred EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC--ceEEEEeccccccHHH
Confidence 99999988887766454444432 2368999999999998543220111 22233332222 3789999999999999
Q ss_pred HHHHHHHHHc
Q 010548 167 VFYYAQKAVL 176 (507)
Q Consensus 167 l~~~i~~~i~ 176 (507)
-++|+...+.
T Consensus 169 gidWL~~~l~ 178 (185)
T KOG0073|consen 169 GIDWLCDDLM 178 (185)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 164
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=2.1e-18 Score=153.95 Aligned_cols=145 Identities=15% Similarity=0.102 Sum_probs=101.0
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCccchh--------hhHHhhccCC
Q 010548 16 VVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLENKG--------KLNEELKRAD 84 (507)
Q Consensus 16 ~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ad 84 (507)
+++|.+|||||||+|+|++.... .....+.+|. .......+..+.+|||||...+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA--IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE--eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 58999999999999999987521 1111122221 122234567899999999877543 3345688999
Q ss_pred EEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548 85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (507)
Q Consensus 85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 164 (507)
++++|+|+.++.+..... +...++.. ++|+++|+||+|+...... ......++. .+++++||++|.|+
T Consensus 79 ~ii~v~d~~~~~~~~~~~--~~~~~~~~--~~piiiv~nK~D~~~~~~~-------~~~~~~~~~-~~~~~~Sa~~~~gv 146 (157)
T cd01894 79 VILFVVDGREGLTPADEE--IAKYLRKS--KKPVILVVNKVDNIKEEDE-------AAEFYSLGF-GEPIPISAEHGRGI 146 (157)
T ss_pred EEEEEEeccccCCccHHH--HHHHHHhc--CCCEEEEEECcccCChHHH-------HHHHHhcCC-CCeEEEecccCCCH
Confidence 999999998775554432 45556555 6999999999999763211 112223332 26899999999999
Q ss_pred hHHHHHHHHH
Q 010548 165 PDVFYYAQKA 174 (507)
Q Consensus 165 ~~l~~~i~~~ 174 (507)
++++++|.+.
T Consensus 147 ~~l~~~l~~~ 156 (157)
T cd01894 147 GDLLDAILEL 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 165
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.78 E-value=1.8e-18 Score=160.51 Aligned_cols=162 Identities=16% Similarity=0.116 Sum_probs=102.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC----CCCCCCCCCCCCeeeCC-----cc------------cCCceEEEEEeCCCCcc
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATE----SVPEKVPPVHAPTRLPP-----DF------------YPDRVPVTIIDTSSSLE 71 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~----~~~~~~~~~~~~~t~~~-----~~------------~~~~~~~~i~Dt~G~~~ 71 (507)
++|+++|++|||||||+++|+.. .+.........+.|+.. .+ ...+..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 11111111111122111 11 12367899999999865
Q ss_pred chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhh-HHHHHHh---
Q 010548 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM-GPIMQQF--- 147 (507)
Q Consensus 72 ~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~-~~~~~~~--- 147 (507)
+........+.+|++++|+|++++.+...... +. ..... ++|+++|+||+|+..........+.. ..+...+
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 54444455677899999999998655444322 22 22223 67999999999987432210011111 1111111
Q ss_pred c-ccCcEEEeCcccCCCchHHHHHHHHHHcCC
Q 010548 148 R-EIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 148 ~-~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~ 178 (507)
+ ...+++++||++|.|+++++++|...+..|
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1 123799999999999999999999887554
No 166
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.78 E-value=2.7e-18 Score=171.16 Aligned_cols=156 Identities=20% Similarity=0.226 Sum_probs=108.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeeCCccc-CCceEEEEEeCCCCccch----hhh---HHhhccC
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENK----GKL---NEELKRA 83 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~~~t~~~~~~-~~~~~~~i~Dt~G~~~~~----~~~---~~~~~~a 83 (507)
..|+|||.||||||||+++|++.+... .++.+.-..++. .+. ....++.+|||||+.+.. .+. ..+++.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig-~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLG-VVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEE-EEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 579999999999999999999875321 122211111111 111 224789999999985322 222 3456689
Q ss_pred CEEEEEEeCCCh---hhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548 84 DAVVLTYACNQQ---STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (507)
Q Consensus 84 d~il~V~D~~~~---~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (507)
+++|+|+|+++. .+++++.. |.+++.... .++|+++|+||+|+..... ..+....+.+.++ .+++++|
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~-l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~---~~~~~~~l~~~~~--~~vi~iS 310 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEI-IRNELKKYSPELAEKPRIVVLNKIDLLDEEE---LAELLKELKKALG--KPVFPIS 310 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHH-HHHHHHHhhhhhccCCEEEEEeCccCCChHH---HHHHHHHHHHHcC--CcEEEEE
Confidence 999999999986 66777765 777776653 3799999999999976422 2333444555544 2689999
Q ss_pred cccCCCchHHHHHHHHHH
Q 010548 158 ATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 158 A~~g~gi~~l~~~i~~~i 175 (507)
|+++.|+++++++|.+.+
T Consensus 311 Aktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 311 ALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCcCHHHHHHHHHHHh
Confidence 999999999999998753
No 167
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.78 E-value=3.9e-18 Score=178.11 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=111.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCccchhh-----------
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLENKGK----------- 75 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 75 (507)
...++|+++|++|||||||+|+|++.... .....+++|. ...+...+..+.+|||||+......
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~--~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERV--IVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCee--ecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHH
Confidence 34689999999999999999999987632 2222233332 1223334568999999997543321
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcE
Q 010548 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETC 153 (507)
Q Consensus 76 ~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~ 153 (507)
...+++.+|++|+|+|++++.+..+.. +...+.+. ++|+++|+||+|+... .. ...+....+...+.. ..++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~~~--~~~iiiv~NK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~~~v 321 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR--IAGLILEA--GKALVIVVNKWDLVKD-EK-TREEFKKELRRKLPFLDFAPI 321 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH--HHHHHHHc--CCcEEEEEECcccCCC-HH-HHHHHHHHHHHhcccCCCCce
Confidence 124789999999999999988877654 66666665 7999999999999721 11 122222333333322 2379
Q ss_pred EEeCcccCCCchHHHHHHHHHHc
Q 010548 154 VECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 154 ~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
++|||++|.|++++|+++.+.+.
T Consensus 322 i~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 322 VFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988653
No 168
>PRK00089 era GTPase Era; Reviewed
Probab=99.77 E-value=1.2e-17 Score=165.40 Aligned_cols=165 Identities=20% Similarity=0.264 Sum_probs=111.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchh--------hhHHh
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKG--------KLNEE 79 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~ 79 (507)
+.-.|+|+|+||||||||+|+|++.+.... +..+.+| +.......+..+.++||||...... ....+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~v--s~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIV--SPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeec--CCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 345799999999999999999999875322 1122222 1111223457899999999764332 22346
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
+..+|++++|+|+++..+.. ...+...++.. ++|+++|+||+|+...... .......+...++ ..+++++||+
T Consensus 82 ~~~~D~il~vvd~~~~~~~~--~~~i~~~l~~~--~~pvilVlNKiDl~~~~~~--l~~~~~~l~~~~~-~~~i~~iSA~ 154 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGPG--DEFILEKLKKV--KTPVILVLNKIDLVKDKEE--LLPLLEELSELMD-FAEIVPISAL 154 (292)
T ss_pred HhcCCEEEEEEeCCCCCChh--HHHHHHHHhhc--CCCEEEEEECCcCCCCHHH--HHHHHHHHHhhCC-CCeEEEecCC
Confidence 78999999999999843322 22255555543 6899999999999743211 2334444544443 3478999999
Q ss_pred cCCCchHHHHHHHHHHcCCCCCCCcc
Q 010548 160 TMIQVPDVFYYAQKAVLHPTAPLFDH 185 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i~~~~~~~~~~ 185 (507)
++.|++++++.|.+.+... ++.+..
T Consensus 155 ~~~gv~~L~~~L~~~l~~~-~~~y~~ 179 (292)
T PRK00089 155 KGDNVDELLDVIAKYLPEG-PPYYPE 179 (292)
T ss_pred CCCCHHHHHHHHHHhCCCC-CCCCCC
Confidence 9999999999998876433 344443
No 169
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.77 E-value=8.4e-18 Score=163.26 Aligned_cols=224 Identities=12% Similarity=0.079 Sum_probs=149.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC---------------CCCCCeeeC---CcccCCceEEEEEeCCCCccchhh
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVP---------------PVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKGK 75 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~---------------~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~~ 75 (507)
+|+|+|++|+|||||+++|+......... ....++|+. ..+.+++.++.++||||...+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 48999999999999999997432111100 011122222 233467889999999999888888
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc--CcE
Q 010548 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI--ETC 153 (507)
Q Consensus 76 ~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~ 153 (507)
+..+++.+|++|+|+|+.++...... .++..++.. ++|+++++||+|+.+.. .......+...++.. ...
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~--~~~~~~~~~--~~p~ivviNK~D~~~a~----~~~~~~~l~~~l~~~~~~~~ 152 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTE--TVWRQADRY--NVPRIAFVNKMDRTGAD----FFRVVEQIREKLGANPVPLQ 152 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCceEEE
Confidence 88999999999999999887443332 255666665 79999999999987532 223344455554432 246
Q ss_pred EEeCcccC-CCchHHHHHHHHHHcCC-C--CC-----CCccchhcccHHHHHHHHHHHhhccCC------CCCccChhhh
Q 010548 154 VECSATTM-IQVPDVFYYAQKAVLHP-T--AP-----LFDHDEQTLKPRCVRALKRIFIICDHD------MDGALNDAEL 218 (507)
Q Consensus 154 ~~~SA~~g-~gi~~l~~~i~~~i~~~-~--~~-----~~~~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~~~el 218 (507)
+++|+..+ .|+-+++ ...+... . .. ..........++++..|.+.....|+. +++.++.+|+
T Consensus 153 ~Pisa~~~f~g~vd~~---~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el 229 (270)
T cd01886 153 LPIGEEDDFRGVVDLI---EMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEI 229 (270)
T ss_pred eccccCCCceEEEEcc---ccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHH
Confidence 88998754 3454444 2222211 1 00 000111223345556666666666554 5778999999
Q ss_pred HHHHhH----------hcCCCCCHHHHHHHHHHHHhhccC
Q 010548 219 NEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHD 248 (507)
Q Consensus 219 ~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~ 248 (507)
...+++ +|++++...|+..+++.+.+.+|+
T Consensus 230 ~~~l~~~~~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~ 269 (270)
T cd01886 230 KAAIRKGTIANKIVPVLCGSAFKNKGVQPLLDAVVDYLPS 269 (270)
T ss_pred HHHHHHHHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCC
Confidence 999887 899999999999999999999886
No 170
>PTZ00099 rab6; Provisional
Probab=99.77 E-value=6.9e-18 Score=153.85 Aligned_cols=139 Identities=13% Similarity=0.129 Sum_probs=108.3
Q ss_pred CCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhc-
Q 010548 36 SVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL- 112 (507)
Q Consensus 36 ~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~- 112 (507)
.|.+.+.++.. .+. ....+....+.+.||||+|++.+..++..+++.||++|+|||++++.||+.+.. |+..+.+.
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~-w~~~i~~~~ 82 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDILNER 82 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHH-HHHHHHHhc
Confidence 45555544433 222 234555667899999999999999999999999999999999999999999975 88877654
Q ss_pred CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHHcCCC
Q 010548 113 EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 113 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~~ 179 (507)
.++.|++||+||+|+...+.+ ..++...++..++. .+++|||++|.||+++|++|.+.+....
T Consensus 83 ~~~~piilVgNK~DL~~~~~v--~~~e~~~~~~~~~~--~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKV--TYEEGMQKAQEYNT--MFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCCCeEEEEEECcccccccCC--CHHHHHHHHHHcCC--EEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 357899999999999765544 23344556666653 5899999999999999999999885543
No 171
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=3e-18 Score=150.56 Aligned_cols=163 Identities=12% Similarity=0.187 Sum_probs=127.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
..+..+|+++|-.|+||||++++|-..++...+|+....+. .+..+++++.+||.+|++.++..++.|++..+++||
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE---~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf 90 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVE---TVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIF 90 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccCCCcccccee---EEEEcceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence 45689999999999999999999998887777666544443 334558999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc-ccCcEEEeCcccCCCchH
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSATTMIQVPD 166 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~ 166 (507)
|+|.+|++.+....+.+...+.... .+.|+++.+||.|+++.-......+.. .+ ..+. ..-.+..|+|.+|+|+.|
T Consensus 91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L-~l-~~l~~~~w~iq~~~a~~G~GL~e 168 (181)
T KOG0070|consen 91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKL-GL-HSLRSRNWHIQSTCAISGEGLYE 168 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHh-hh-hccCCCCcEEeeccccccccHHH
Confidence 9999999999998886777666553 579999999999998764430111111 11 1111 111467899999999999
Q ss_pred HHHHHHHHHc
Q 010548 167 VFYYAQKAVL 176 (507)
Q Consensus 167 l~~~i~~~i~ 176 (507)
.++++.+.+.
T Consensus 169 gl~wl~~~~~ 178 (181)
T KOG0070|consen 169 GLDWLSNNLK 178 (181)
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 172
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.1e-18 Score=145.94 Aligned_cols=85 Identities=25% Similarity=0.418 Sum_probs=81.6
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
+..|||++||..|||||+|++||..+-|++-...|+|++|.++++.++|++++++||||+|++||+++. .+|||.|++
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsit--qsyyrsaha 82 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSIT--QSYYRSAHA 82 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHH--HHHhhhcce
Confidence 457999999999999999999999999999888999999999999999999999999999999999998 899999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
++||||+
T Consensus 83 lilvydi 89 (213)
T KOG0095|consen 83 LILVYDI 89 (213)
T ss_pred EEEEEec
Confidence 9999996
No 173
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.77 E-value=7.4e-18 Score=150.26 Aligned_cols=145 Identities=23% Similarity=0.236 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhh--------hHHhhcc
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNEELKR 82 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~ 82 (507)
++|+++|++|+|||||++++.+..... ..++..... ....+...+.++.+|||||...+... ....+..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDV-IEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccce-EEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 689999999999999999999876421 122211111 11233345678999999997654322 2356789
Q ss_pred CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (507)
Q Consensus 83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 162 (507)
+|++++|+|++++.+...... +.. ..++|+++|+||+|+...... .. .....+++++||+++.
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~-~~~-----~~~~~vi~v~nK~D~~~~~~~---------~~--~~~~~~~~~~Sa~~~~ 143 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEI-LEL-----PADKPIIVVLNKSDLLPDSEL---------LS--LLAGKPIIAISAKTGE 143 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHH-HHh-----hcCCCEEEEEEchhcCCcccc---------cc--ccCCCceEEEECCCCC
Confidence 999999999999877776543 222 337999999999998753221 11 1112379999999999
Q ss_pred CchHHHHHHHHHH
Q 010548 163 QVPDVFYYAQKAV 175 (507)
Q Consensus 163 gi~~l~~~i~~~i 175 (507)
|+.+++++|.+.+
T Consensus 144 ~v~~l~~~l~~~~ 156 (157)
T cd04164 144 GLDELKEALLELA 156 (157)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999987643
No 174
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.77 E-value=6.3e-18 Score=157.16 Aligned_cols=165 Identities=14% Similarity=0.110 Sum_probs=107.1
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCc----------cch
Q 010548 4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL----------ENK 73 (507)
Q Consensus 4 m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~----------~~~ 73 (507)
|.+......++|+++|++|||||||+|+|++..+...+.+.. +.|....+...+..+.+|||||.. .+.
T Consensus 16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~-~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~ 94 (196)
T PRK00454 16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTP-GRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQ 94 (196)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCC-CceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHH
Confidence 444455667899999999999999999999876544433322 233222222224689999999953 222
Q ss_pred hhhHHhhcc---CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548 74 GKLNEELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI 150 (507)
Q Consensus 74 ~~~~~~~~~---ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (507)
.....+++. ++++++|+|.+++.+..... +...+... ++|+++++||+|+..........+.+....... .
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--i~~~l~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~--~ 168 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDLQ--MIEWLKEY--GIPVLIVLTKADKLKKGERKKQLKKVRKALKFG--D 168 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHHHH--HHHHHHHc--CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc--C
Confidence 333445554 46888999988765544322 34445444 789999999999875422201111122222222 2
Q ss_pred CcEEEeCcccCCCchHHHHHHHHHH
Q 010548 151 ETCVECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 151 ~~~~~~SA~~g~gi~~l~~~i~~~i 175 (507)
.+++++||+++.|++++++.|.+.+
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999987765
No 175
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.77 E-value=4.3e-18 Score=156.05 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=97.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCcc----------chhhhHH
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----------NKGKLNE 78 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 78 (507)
..+..+|+|+|++|||||||+|++++..+...+... ++.|....+...+..+.+|||||... +......
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKT-PGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC-CCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 356789999999999999999999987643332222 22222111111112689999999632 2223334
Q ss_pred hhc---cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEE
Q 010548 79 ELK---RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE 155 (507)
Q Consensus 79 ~~~---~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (507)
+++ .++++++|+|++++.+..... +...+... ++|+++|+||+|+..........+.+.......+...++++
T Consensus 94 ~l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~~~--~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~ 169 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRHPLKELDLE--MLEWLRER--GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQL 169 (179)
T ss_pred HHHhChhhcEEEEEecCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEE
Confidence 554 358999999999876655543 45556554 79999999999987532210112223333333322237999
Q ss_pred eCcccCCCch
Q 010548 156 CSATTMIQVP 165 (507)
Q Consensus 156 ~SA~~g~gi~ 165 (507)
+||++|+|++
T Consensus 170 ~Sa~~g~gi~ 179 (179)
T TIGR03598 170 FSSLKKTGID 179 (179)
T ss_pred EECCCCCCCC
Confidence 9999999984
No 176
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.4e-18 Score=152.69 Aligned_cols=84 Identities=18% Similarity=0.413 Sum_probs=80.9
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+|++++|+.+||||||++||+.+.|...|.+|+|.+|-.+.+.+.+..+.+++|||||||||+++. +.|+|++.++
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsli--psY~Rds~va 98 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--PSYIRDSSVA 98 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhh--hhhccCCeEE
Confidence 34899999999999999999999999999999999999999999999999999999999999999999 7999999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
|+|||+
T Consensus 99 viVyDi 104 (221)
T KOG0094|consen 99 VIVYDI 104 (221)
T ss_pred EEEEec
Confidence 999996
No 177
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=1.9e-17 Score=168.41 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=110.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCc---ccC-CceEEEEEeCCCCccch-------hhhHHhhcc
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPD---FYP-DRVPVTIIDTSSSLENK-------GKLNEELKR 82 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~---~~~-~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 82 (507)
.|+|||.||||||||+|+|++.+. ..+..+.+|.... +.. ....+.++||||..+.. .....+++.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~---~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP---KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc---cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 699999999999999999998763 2233344442221 222 23569999999986422 122356899
Q ss_pred CCEEEEEEeCC---ChhhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEe
Q 010548 83 ADAVVLTYACN---QQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC 156 (507)
Q Consensus 83 ad~il~V~D~~---~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (507)
+|++++|+|++ +...++.... |..++.... .++|+++|+||+|+...... .+.+..+...++...+++++
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~-l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el---~~~l~~l~~~~~~~~~Vi~I 313 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARI-IINELEKYSPKLAEKPRWLVFNKIDLLDEEEA---EERAKAIVEALGWEGPVYLI 313 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHH-HHHHHHhhhhhhcCCCEEEEEeCCccCChHHH---HHHHHHHHHHhCCCCCEEEE
Confidence 99999999988 4455666654 777777653 36899999999998653222 23334444444322258999
Q ss_pred CcccCCCchHHHHHHHHHHcC
Q 010548 157 SATTMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 157 SA~~g~gi~~l~~~i~~~i~~ 177 (507)
||+++.|++++++.|.+.+..
T Consensus 314 SA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 314 SAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred ECCCCcCHHHHHHHHHHHhhh
Confidence 999999999999999987743
No 178
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.76 E-value=2.4e-17 Score=157.30 Aligned_cols=202 Identities=15% Similarity=0.164 Sum_probs=137.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC---------C------CCCee---eCCcccCCceEEEEEeCCCCccchhh
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPP---------V------HAPTR---LPPDFYPDRVPVTIIDTSSSLENKGK 75 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~---------~------~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~ 75 (507)
+|+++|++|+|||||+++|+...-...... . ..+.+ ....+.+++.++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 489999999999999999986532111000 0 00111 11233466889999999999999888
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEE
Q 010548 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE 155 (507)
Q Consensus 76 ~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (507)
...+++.+|++++|+|++++..... ..+...+++. ++|+++++||+|+... ........+...++.. +++
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~a----~~~~~~~~i~~~~~~~--~~~ 150 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAGA----DLEKVYQEIKEKLSSD--IVP 150 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccCC----CHHHHHHHHHHHHCCC--eEE
Confidence 8999999999999999998755432 2366667666 7999999999998754 2345666777777652 333
Q ss_pred eCcccCCCchHHHHHHHHHHcCCCCCCCccchhcccHHHHHHHHHHHhhccCC------CCCccChhhhHHHHhH-----
Q 010548 156 CSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHD------MDGALNDAELNEFQVK----- 224 (507)
Q Consensus 156 ~SA~~g~gi~~l~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~~~el~~~~~~----- 224 (507)
+.-- ++...+. ........|.+.....|+. +++.++.+|+....++
T Consensus 151 ~~~p---~~~~~~~--------------------~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~ 207 (237)
T cd04168 151 MQKV---GLAPNIC--------------------ETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKR 207 (237)
T ss_pred EECC---cEeeeee--------------------eeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 2210 0000000 0001112333333333332 5678999999999987
Q ss_pred -----hcCCCCCHHHHHHHHHHHHhhccC
Q 010548 225 -----CFNAPLQPAEIVGVKRVVQEKQHD 248 (507)
Q Consensus 225 -----~~~~~l~~~~~~~l~~~i~~~~~~ 248 (507)
+|++++...|+..|++.+.+.+|+
T Consensus 208 ~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~ 236 (237)
T cd04168 208 KVFPVYHGSALKGIGIEELLEGITKLFPT 236 (237)
T ss_pred CeEEEEEccccCCcCHHHHHHHHHHhcCC
Confidence 899999999999999999999986
No 179
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.76 E-value=6.2e-18 Score=154.04 Aligned_cols=149 Identities=21% Similarity=0.266 Sum_probs=100.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeC---CcccCC-ceEEEEEeCCCCcc----chhh---hHHhhccCC
Q 010548 17 VVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLP---PDFYPD-RVPVTIIDTSSSLE----NKGK---LNEELKRAD 84 (507)
Q Consensus 17 ivG~~~vGKSSLin~l~~~~~~-~~~~~~~~~~t~~---~~~~~~-~~~~~i~Dt~G~~~----~~~~---~~~~~~~ad 84 (507)
|+|++|||||||+|+|++.... ..++ .+|.. ..+... +..+.+|||||..+ ...+ ....++.+|
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d 76 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYP----FTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRAD 76 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCC----ceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccC
Confidence 5899999999999999998641 1121 12211 122344 78899999999742 1222 234678899
Q ss_pred EEEEEEeCCCh------hhHHHHHHhHHHHHHhcC--------CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548 85 AVVLTYACNQQ------STLSRLSSYWLPELRRLE--------IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI 150 (507)
Q Consensus 85 ~il~V~D~~~~------~s~~~~~~~~~~~l~~~~--------~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (507)
++++|+|+++. .++..... |...+.... .++|+++|+||+|+...... . ....... .....
T Consensus 77 ~ii~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~-~~~~~~~--~~~~~ 151 (176)
T cd01881 77 AILHVVDASEDDDIGGVDPLEDYEI-LNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEEL-E-EELVREL--ALEEG 151 (176)
T ss_pred EEEEEEeccCCccccccCHHHHHHH-HHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHH-H-HHHHHHH--hcCCC
Confidence 99999999988 46766654 666655432 36999999999999765333 1 1101111 12222
Q ss_pred CcEEEeCcccCCCchHHHHHHHHH
Q 010548 151 ETCVECSATTMIQVPDVFYYAQKA 174 (507)
Q Consensus 151 ~~~~~~SA~~g~gi~~l~~~i~~~ 174 (507)
.+++++||+++.|++++++.+.+.
T Consensus 152 ~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 152 AEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred CCEEEEehhhhcCHHHHHHHHHhh
Confidence 369999999999999999988653
No 180
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.76 E-value=3.5e-18 Score=145.53 Aligned_cols=113 Identities=33% Similarity=0.492 Sum_probs=85.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeee---CCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
||+|+|++|||||||+++|++..+. ..........++ ..........+.+||++|.+.+.......+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 122222222221 122234445699999999988888777889999999999
Q ss_pred EeCCChhhHHHHHHh--HHHHHHhcCCCCcEEEEEeccc
Q 010548 90 YACNQQSTLSRLSSY--WLPELRRLEIKVPIIVAGCKLD 126 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~--~~~~l~~~~~~~piilv~NK~D 126 (507)
||++++.|++.+.+. |+..+++..+++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999999997652 6777777667899999999998
No 181
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.76 E-value=1.5e-18 Score=145.02 Aligned_cols=155 Identities=17% Similarity=0.245 Sum_probs=122.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
..+.+.++|-.++|||||+|.+..+.+.+. +|+...... .+..+.+.+.+||.||+..++.+++.|+++++++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 357899999999999999999998887666 444333322 4456789999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc------cCcEEEeCcccCC
Q 010548 90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE------IETCVECSATTMI 162 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~SA~~g~ 162 (507)
+|+.+++..+...+.+...+.+.. .++|+++.|||.|++..-.. ..+..+++- -..+|.+||+...
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~-------~~li~rmgL~sitdREvcC~siScke~~ 168 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK-------IALIERMGLSSITDREVCCFSISCKEKV 168 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccH-------HHHHHHhCccccccceEEEEEEEEcCCc
Confidence 999999888877776777766542 47999999999999875222 122222221 1268999999999
Q ss_pred CchHHHHHHHHHH
Q 010548 163 QVPDVFYYAQKAV 175 (507)
Q Consensus 163 gi~~l~~~i~~~i 175 (507)
||+.+.++|++..
T Consensus 169 Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 169 NIDITLDWLIEHS 181 (186)
T ss_pred cHHHHHHHHHHHh
Confidence 9999999998753
No 182
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=1.9e-17 Score=169.18 Aligned_cols=152 Identities=20% Similarity=0.263 Sum_probs=109.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc---cCC-ceEEEEEeCCCCccc----hhhhH---Hhhcc
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF---YPD-RVPVTIIDTSSSLEN----KGKLN---EELKR 82 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~---~~~-~~~~~i~Dt~G~~~~----~~~~~---~~~~~ 82 (507)
.|+|||.||||||||+|+|++.+. .+ ...+.+|....+ ... +..+.+|||||..+. ..+.. .+++.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~--kI-a~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP--KI-ANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC--cc-ccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 799999999999999999998763 22 122333422221 222 578999999997532 12223 34667
Q ss_pred CCEEEEEEeCCCh---hhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEe
Q 010548 83 ADAVVLTYACNQQ---STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC 156 (507)
Q Consensus 83 ad~il~V~D~~~~---~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (507)
++++|+|+|+++. .++++... |..++..+. .++|++||+||+|+... .+....+.+.++ .+++++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~-i~~EL~~y~~~L~~kP~IVV~NK~DL~~~------~e~l~~l~~~l~--~~i~~i 307 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEK-INKELKLYNPRLLERPQIVVANKMDLPEA------EENLEEFKEKLG--PKVFPI 307 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHH-HHHHHhhhchhccCCcEEEEEeCCCCcCC------HHHHHHHHHHhC--CcEEEE
Confidence 9999999999864 56677664 888887754 26999999999998432 223445555555 368999
Q ss_pred CcccCCCchHHHHHHHHHHcC
Q 010548 157 SATTMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 157 SA~~g~gi~~l~~~i~~~i~~ 177 (507)
||+++.|+++++++|.+.+..
T Consensus 308 SA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 308 SALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887744
No 183
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.5e-18 Score=151.28 Aligned_cols=84 Identities=26% Similarity=0.411 Sum_probs=80.4
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+|++++|++|||||||+.||..++|.....+|+|.-|..+.+.+++..+++.||||||++||.++. +.|||+|+++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sla--pMYyRgA~AA 81 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLA--PMYYRGANAA 81 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccc--cceecCCcEE
Confidence 35899999999999999999999999999889999999999999999889999999999999999998 8999999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
|+|||+
T Consensus 82 ivvYDi 87 (200)
T KOG0092|consen 82 IVVYDI 87 (200)
T ss_pred EEEEec
Confidence 999996
No 184
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.75 E-value=2.5e-17 Score=147.97 Aligned_cols=155 Identities=21% Similarity=0.222 Sum_probs=105.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchh--------hhHHh
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKG--------KLNEE 79 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~ 79 (507)
...+|+++|.+|+|||||+|++++........ ...++ ....+...+..+.+|||||...... .....
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP--KPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA 79 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccC--CCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence 35789999999999999999999876422111 11111 1122334467899999999764332 22346
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
+..+|++++|+|++++.+. ....+...+... +.|+++|+||+|+...... ..+....+....+ ..+++++|++
T Consensus 80 ~~~~d~i~~v~d~~~~~~~--~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~-~~~~~~~s~~ 152 (168)
T cd04163 80 LKDVDLVLFVVDASEPIGE--GDEFILELLKKS--KTPVILVLNKIDLVKDKED--LLPLLEKLKELGP-FAEIFPISAL 152 (168)
T ss_pred HHhCCEEEEEEECCCccCc--hHHHHHHHHHHh--CCCEEEEEEchhccccHHH--HHHHHHHHHhccC-CCceEEEEec
Confidence 8899999999999987222 222255556554 6899999999999743221 2333444444443 2378999999
Q ss_pred cCCCchHHHHHHHHH
Q 010548 160 TMIQVPDVFYYAQKA 174 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~ 174 (507)
++.|++++++.|.+.
T Consensus 153 ~~~~~~~l~~~l~~~ 167 (168)
T cd04163 153 KGENVDELLEEIVKY 167 (168)
T ss_pred cCCChHHHHHHHHhh
Confidence 999999999998754
No 185
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=5.4e-18 Score=147.83 Aligned_cols=85 Identities=22% Similarity=0.388 Sum_probs=81.9
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
.+.+|++++|+.|||||+|+.||+.+.|..+++.|+|.+|..+.+.+++++++++||||+|+++|+++. .+|||.|.+
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~--~syYr~a~G 81 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVT--RSYYRGAAG 81 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHH--HHHhccCcc
Confidence 357999999999999999999999999999999999999999999999999999999999999999998 789999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
++||||+
T Consensus 82 alLVydi 88 (216)
T KOG0098|consen 82 ALLVYDI 88 (216)
T ss_pred eEEEEEc
Confidence 9999996
No 186
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.7e-18 Score=144.31 Aligned_cols=87 Identities=25% Similarity=0.457 Sum_probs=83.2
Q ss_pred ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (507)
Q Consensus 419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a 498 (507)
+.++.+|++++|+.|.|||||+++|+.++|...+..|+|++|..+.+.+.++.++++||||+||++|+++. +.|||+|
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVt--RsYYRGA 82 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVT--RSYYRGA 82 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHH--HHHhccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999998 7899999
Q ss_pred cEEEEEEeC
Q 010548 499 DVTIFVYDR 507 (507)
Q Consensus 499 d~vilv~D~ 507 (507)
.+++||||+
T Consensus 83 AGAlLVYD~ 91 (214)
T KOG0086|consen 83 AGALLVYDI 91 (214)
T ss_pred cceEEEEec
Confidence 999999996
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=1.7e-17 Score=173.48 Aligned_cols=156 Identities=22% Similarity=0.210 Sum_probs=110.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchh-----------hh
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKG-----------KL 76 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~ 76 (507)
..++|+|+|++|||||||+|+|++... ...+..+++| +...+...+..+.+|||||...... ..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~--~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEER--VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 469999999999999999999998762 2233333444 2223334567899999999743221 11
Q ss_pred HHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcEE
Q 010548 77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCV 154 (507)
Q Consensus 77 ~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 154 (507)
..+++.+|++|+|+|++++.+..+.. +...+... ++|+++|+||+|+..... ..+....+...+.. ..+++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~~~--~~~~ivv~NK~Dl~~~~~---~~~~~~~~~~~l~~~~~~~i~ 322 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR--IAGLALEA--GRALVIVVNKWDLVDEKT---MEEFKKELRRRLPFLDYAPIV 322 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCcEEEEEECccCCCHHH---HHHHHHHHHHhcccccCCCEE
Confidence 24788999999999999998777654 66666665 799999999999874321 11222223333221 23799
Q ss_pred EeCcccCCCchHHHHHHHHHH
Q 010548 155 ECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 155 ~~SA~~g~gi~~l~~~i~~~i 175 (507)
++||++|.|++++++.+.+..
T Consensus 323 ~~SA~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 323 FISALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999988765
No 188
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.74 E-value=2.9e-17 Score=144.37 Aligned_cols=153 Identities=24% Similarity=0.306 Sum_probs=108.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCC
Q 010548 17 VVGDRGTGKSSLIAAAATESV-PEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ 94 (507)
Q Consensus 17 ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~ 94 (507)
|+|++|+|||||++++.+... .....++... .............+.+||+||...+.......++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998875 2232222211 11222333447889999999988877777888999999999999999
Q ss_pred hhhHHHHHHhH-HHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHH
Q 010548 95 QSTLSRLSSYW-LPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ 172 (507)
Q Consensus 95 ~~s~~~~~~~~-~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~ 172 (507)
+.+.......+ .........++|+++|+||+|+...... . ............. .+++++||+++.|+.+++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~-~-~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV-S-EEELAEQLAKELG-VPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch-H-HHHHHHHHHhhcC-CcEEEEecCCCCChHHHHHHHh
Confidence 99888887621 2222333458999999999998765433 1 1111122222222 3799999999999999999875
No 189
>PRK11058 GTPase HflX; Provisional
Probab=99.74 E-value=3.9e-17 Score=168.04 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCC-CCCCeeeCCcccCCceEEEEEeCCCCccc--hhhhH------Hhhcc
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLEN--KGKLN------EELKR 82 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~-~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~--~~~~~------~~~~~ 82 (507)
.+|+|+|.+|||||||+|+|++..+.. +.+. +...++....+ +....+.+|||+|.... ...+. ..++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l-~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV-ADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe-CCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 589999999999999999999876432 2222 12222212222 22237899999997432 22222 34689
Q ss_pred CCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (507)
Q Consensus 83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 161 (507)
||++|+|+|++++.+++.+.. |...+.... .++|+++|+||+|+...... .... ...+ ...++++||++|
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-----~~~~--~~~~-~~~~v~ISAktG 347 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-----RIDR--DEEN-KPIRVWLSAQTG 347 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchhH-----HHHH--HhcC-CCceEEEeCCCC
Confidence 999999999999988877653 444444432 37999999999998643111 1111 1122 112588999999
Q ss_pred CCchHHHHHHHHHHc
Q 010548 162 IQVPDVFYYAQKAVL 176 (507)
Q Consensus 162 ~gi~~l~~~i~~~i~ 176 (507)
.|++++++.|.+.+.
T Consensus 348 ~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 348 AGIPLLFQALTERLS 362 (426)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998874
No 190
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.73 E-value=1.6e-16 Score=133.87 Aligned_cols=168 Identities=18% Similarity=0.183 Sum_probs=129.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCCeeeCCccc-CCceEEEEEeCCCCccc-hhhhHHhhcc
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLEN-KGKLNEELKR 82 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~---~~~~~~~~t~~~~~~-~~~~~~~i~Dt~G~~~~-~~~~~~~~~~ 82 (507)
.+-+..||+++|..+||||+++.+++.++.... .++....+....+-+ .-...+.++||.|...+ ..+-+.|+.-
T Consensus 5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred hhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence 345678999999999999999999997765433 233323333222222 22467999999999887 4555678899
Q ss_pred CCEEEEEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (507)
Q Consensus 83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (507)
+|++++|||..+++||+.+.. +..+|.+.. ..+||++++||+|+.+.+.+ ..+.+..|++.-+- ..++++|.+
T Consensus 85 aDafVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p~~v--d~d~A~~Wa~rEkv--kl~eVta~d 159 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEPREV--DMDVAQIWAKREKV--KLWEVTAMD 159 (198)
T ss_pred CceEEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccchhc--CHHHHHHHHhhhhe--eEEEEEecc
Confidence 999999999999999999885 777777653 35899999999999877666 34456677766553 689999999
Q ss_pred CCCchHHHHHHHHHHcCCCC
Q 010548 161 MIQVPDVFYYAQKAVLHPTA 180 (507)
Q Consensus 161 g~gi~~l~~~i~~~i~~~~~ 180 (507)
...+-+.|.++...+..|+.
T Consensus 160 R~sL~epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 160 RPSLYEPFTYLASRLHQPQS 179 (198)
T ss_pred chhhhhHHHHHHHhccCCcc
Confidence 99999999999998876654
No 191
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.73 E-value=4.9e-17 Score=157.74 Aligned_cols=223 Identities=13% Similarity=0.056 Sum_probs=132.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-----C--------------ee---eCCcccCCceEEEEEeCCCCc
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-----P--------------TR---LPPDFYPDRVPVTIIDTSSSL 70 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-----~--------------~t---~~~~~~~~~~~~~i~Dt~G~~ 70 (507)
.+|+|+|++|+|||||+++|+...-.....+... + .+ ....+.++++++++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4799999999999999999985432111111000 0 00 112345678999999999998
Q ss_pred cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI 150 (507)
Q Consensus 71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (507)
+|......+++.+|++|+|+|++++..... ..++...... ++|+++++||+|+.... .......+...++..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~~--~~P~iivvNK~D~~~a~----~~~~~~~l~~~l~~~ 154 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRLR--GIPIITFINKLDREGRD----PLELLDEIEEELGID 154 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHhc--CCCEEEEEECCccCCCC----HHHHHHHHHHHHCCC
Confidence 888777888999999999999988643322 2255555554 79999999999986642 223345555556542
Q ss_pred CcEEEeCcccCCCchHHHHHHHHHHcCC-CC--C-CCc----c-chhcccHHHHHHHHHHHhhccCCCCCccChhhhHHH
Q 010548 151 ETCVECSATTMIQVPDVFYYAQKAVLHP-TA--P-LFD----H-DEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEF 221 (507)
Q Consensus 151 ~~~~~~SA~~g~gi~~l~~~i~~~i~~~-~~--~-~~~----~-~~~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~ 221 (507)
.-.+.+....+.++..+.+.+...+... .. . ... + .......+....|-+.+. ++..++.+++...
T Consensus 155 ~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~~~-----e~~~~~~~~~~~~ 229 (267)
T cd04169 155 CTPLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKLDELGGDLAEQLR-----EELELLEGAGPEF 229 (267)
T ss_pred ceeEEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHHHHhcCHHHHHHHh-----CCCccchhhhHHH
Confidence 2122333334444444444444333211 10 0 000 0 000111111112222111 2234555555544
Q ss_pred HhH----------hcCCCCCHHHHHHHHHHHHhhccC
Q 010548 222 QVK----------CFNAPLQPAEIVGVKRVVQEKQHD 248 (507)
Q Consensus 222 ~~~----------~~~~~l~~~~~~~l~~~i~~~~~~ 248 (507)
.++ +|++++...|+..|++.+.+.+|+
T Consensus 230 ~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~ 266 (267)
T cd04169 230 DQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPA 266 (267)
T ss_pred hHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCC
Confidence 444 899999999999999999999986
No 192
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=4.3e-17 Score=162.41 Aligned_cols=231 Identities=21% Similarity=0.221 Sum_probs=154.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCcc-chh--------hhH
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLE-NKG--------KLN 77 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~-~~~--------~~~ 77 (507)
...++|+|+|+||||||||+|.|.+.. ..+++..+++| +...++.+++++.+.||+|..+ ... ...
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~d--rsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSRED--RSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCC--ceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence 456899999999999999999999988 77777788888 6677888999999999999876 222 223
Q ss_pred HhhccCCEEEEEEeCCCh--hhHHHHHHhHHHHHHhc-------CCCCcEEEEEecccCCCC-CCccchhhhhHHHHHHh
Q 010548 78 EELKRADAVVLTYACNQQ--STLSRLSSYWLPELRRL-------EIKVPIIVAGCKLDLRGD-HNATSLEEVMGPIMQQF 147 (507)
Q Consensus 78 ~~~~~ad~il~V~D~~~~--~s~~~~~~~~~~~l~~~-------~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~ 147 (507)
..++.||++++|+|+... ++...+.+ .+...... ....|++++.||+|+... ... ........-....
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~-~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~-~~~~~~~~~~~~~ 421 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIAR-ILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEM-TKIPVVYPSAEGR 421 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHH-HHHHhccceEEEeccccccceEEEechhhccCccccc-cCCceeccccccC
Confidence 678999999999999433 33333222 33322221 124899999999999875 221 1100000001111
Q ss_pred cccCcEEEeCcccCCCchHHHHHHHHHHcC----CC--CCCCccchhc-ccHHHHH-HHHHHHhhccCCCCCccChhhhH
Q 010548 148 REIETCVECSATTMIQVPDVFYYAQKAVLH----PT--APLFDHDEQT-LKPRCVR-ALKRIFIICDHDMDGALNDAELN 219 (507)
Q Consensus 148 ~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~----~~--~~~~~~~~~~-~~~~~~~-~l~~~~~~~d~~~d~~l~~~el~ 219 (507)
+......++|+++++|+.+|...+.+.+.. +. ++...+.+.. ....|.. .+.+.+...+...|..+..++|+
T Consensus 422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~s~~~t~~~~r~~~~~r~~~~~~l~~~~~~k~~~~D~~la~~~lR 501 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTKEGCERLSTALLNIVERLVVSPHSAPPTLSQKRIKELLRTCAAPELERRFLAKQLKEDIDLAGEPLR 501 (531)
T ss_pred cccceEEEeeechhhhHHHHHHHHHHHHHHhhcCCCCCchhhcchhHHHHHHhhhhhhHHHHHHhhhcccchhhccchHH
Confidence 222245779999999999999988887632 21 2233333332 3333333 57777777777789999999999
Q ss_pred HHHhHhcCCCCCHHHHHHHHHHHHhh
Q 010548 220 EFQVKCFNAPLQPAEIVGVKRVVQEK 245 (507)
Q Consensus 220 ~~~~~~~~~~l~~~~~~~l~~~i~~~ 245 (507)
.++...-.... ..+.+.+.+.+...
T Consensus 502 ~a~~~i~r~tg-gggte~vls~ifqk 526 (531)
T KOG1191|consen 502 LAQRSIARITG-GGGTEEVLSSIFQK 526 (531)
T ss_pred HHHhhhcccCC-CCchhhHHHHHHHH
Confidence 99887665555 56666666666543
No 193
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1e-17 Score=150.32 Aligned_cols=87 Identities=23% Similarity=0.397 Sum_probs=83.5
Q ss_pred ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (507)
Q Consensus 419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a 498 (507)
+.++.+||++||++||||||++.||..+.|...+..|+|.+|.++.+.++|..+++++|||+||++|+++. ..|||+|
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~--~sYyrgA 85 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTIT--TAYYRGA 85 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHH--HHHHhhc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999998 7899999
Q ss_pred cEEEEEEeC
Q 010548 499 DVTIFVYDR 507 (507)
Q Consensus 499 d~vilv~D~ 507 (507)
++++||||+
T Consensus 86 ~gi~LvyDi 94 (207)
T KOG0078|consen 86 MGILLVYDI 94 (207)
T ss_pred CeeEEEEEc
Confidence 999999996
No 194
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.73 E-value=5e-18 Score=147.79 Aligned_cols=85 Identities=21% Similarity=0.447 Sum_probs=81.0
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
+..+||+++|++|||||||+|+|++++|...|..|+|.+|..+.+.+++..+.++||||||++||.++. ...||+||+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg--~aFYRgaDc 84 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLG--VAFYRGADC 84 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcc--cceecCCce
Confidence 457999999999999999999999999999999999999999999999888899999999999999998 679999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 85 Cvlvydv 91 (210)
T KOG0394|consen 85 CVLVYDV 91 (210)
T ss_pred EEEEeec
Confidence 9999995
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.72 E-value=5.1e-17 Score=178.70 Aligned_cols=157 Identities=19% Similarity=0.117 Sum_probs=108.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCcc----------chhh-h
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLE----------NKGK-L 76 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~----------~~~~-~ 76 (507)
..+||+++|++|||||||+|+|++.... .+...+++|. ...+..++..+.+|||||+.+ +..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~--~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERA--VVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccc--ccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999988732 1222223331 122334566788999999642 1111 1
Q ss_pred HHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc--ccCcEE
Q 010548 77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--EIETCV 154 (507)
Q Consensus 77 ~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 154 (507)
..+++.+|++++|+|++++.+..+.. +...+... ++|+++|+||+|+.+.... ......+...+. ...+++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~--i~~~~~~~--~~piIiV~NK~DL~~~~~~---~~~~~~~~~~l~~~~~~~ii 599 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK--VMSMAVDA--GRALVLVFNKWDLMDEFRR---QRLERLWKTEFDRVTWARRV 599 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEEchhcCChhHH---HHHHHHHHHhccCCCCCCEE
Confidence 24578999999999999998888765 55666555 7999999999999753221 111112222221 123679
Q ss_pred EeCcccCCCchHHHHHHHHHHc
Q 010548 155 ECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 155 ~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
++||++|.|++++++.+.+.+.
T Consensus 600 ~iSAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 600 NLSAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 196
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.1e-17 Score=149.32 Aligned_cols=88 Identities=26% Similarity=0.376 Sum_probs=83.8
Q ss_pred cccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccc
Q 010548 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (507)
Q Consensus 418 ~~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 497 (507)
+..++.|||++||+|+||||-|+.||..++|...+.+|+|.++....+.++++.++.+|||||||+||+.+. ..|||+
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAit--SaYYrg 86 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAIT--SAYYRG 86 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcccc--chhhcc
Confidence 345789999999999999999999999999999999999999999999999999999999999999999988 689999
Q ss_pred ccEEEEEEeC
Q 010548 498 CDVTIFVYDR 507 (507)
Q Consensus 498 ad~vilv~D~ 507 (507)
|.++++|||+
T Consensus 87 AvGAllVYDI 96 (222)
T KOG0087|consen 87 AVGALLVYDI 96 (222)
T ss_pred cceeEEEEec
Confidence 9999999996
No 197
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=5.1e-17 Score=167.94 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=104.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccch----h---hhHHhhc
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENK----G---KLNEELK 81 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~----~---~~~~~~~ 81 (507)
...|+|||.||||||||+|+|++.+.. + ...+.+|+. ..+...+.++.+|||||+.+.. . ....+++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpk--I-adypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPK--I-ADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCcc--c-cccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 357999999999999999999987632 2 222333422 1233456789999999974321 1 1234678
Q ss_pred cCCEEEEEEeCCCh----hhHHHHHHhHHHHHHhcC------------CCCcEEEEEecccCCCCCCccchhhhhHHHHH
Q 010548 82 RADAVVLTYACNQQ----STLSRLSSYWLPELRRLE------------IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ 145 (507)
Q Consensus 82 ~ad~il~V~D~~~~----~s~~~~~~~~~~~l~~~~------------~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~ 145 (507)
.+|++|+|+|+++. +.++++.. |..++..+. .++|+|+|+||+|+.+.... .+.......
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~-i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el---~e~l~~~l~ 311 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDA-LEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL---AEFVRPELE 311 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHH-HHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH---HHHHHHHHH
Confidence 89999999999853 34444443 444444332 26899999999999754222 111222222
Q ss_pred HhcccCcEEEeCcccCCCchHHHHHHHHHHcC
Q 010548 146 QFREIETCVECSATTMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 146 ~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~ 177 (507)
..+ .++++|||+++.|+++++++|.+.+..
T Consensus 312 ~~g--~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 312 ARG--WPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred HcC--CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 233 268999999999999999999887643
No 198
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.72 E-value=4e-17 Score=150.87 Aligned_cols=157 Identities=22% Similarity=0.290 Sum_probs=111.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------CC--CCCCeee---CCccc--CCceEEEEEeCCCCc
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKV-------------PP--VHAPTRL---PPDFY--PDRVPVTIIDTSSSL 70 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~-------------~~--~~~~~t~---~~~~~--~~~~~~~i~Dt~G~~ 70 (507)
+.++|+++|+.++|||||+++|+........ .+ ...+.|+ ...+. .....+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4578999999999999999999965421110 00 0011111 11222 567899999999999
Q ss_pred cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhH----HHHHH
Q 010548 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG----PIMQQ 146 (507)
Q Consensus 71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~----~~~~~ 146 (507)
.+.......++.+|++|+|+|+.++....... .+..++.. ++|+++|+||+|+... ...+... .+.+.
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~--~l~~~~~~--~~p~ivvlNK~D~~~~----~~~~~~~~~~~~l~~~ 153 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEE--HLKILREL--GIPIIVVLNKMDLIEK----ELEEIIEEIKEKLLKE 153 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHH--HHHHHHHT--T-SEEEEEETCTSSHH----HHHHHHHHHHHHHHHH
T ss_pred ceeecccceecccccceeeeeccccccccccc--cccccccc--ccceEEeeeeccchhh----hHHHHHHHHHHHhccc
Confidence 98888889999999999999999875554433 56667666 7999999999999832 1222333 33333
Q ss_pred hcc----cCcEEEeCcccCCCchHHHHHHHHHH
Q 010548 147 FRE----IETCVECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 147 ~~~----~~~~~~~SA~~g~gi~~l~~~i~~~i 175 (507)
++. ..+++++||++|.|+++|++.|.+.+
T Consensus 154 ~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 154 YGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 322 23799999999999999999998765
No 199
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.72 E-value=5.9e-17 Score=172.54 Aligned_cols=156 Identities=18% Similarity=0.160 Sum_probs=107.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC---cccCC-ceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP---DFYPD-RVPVTIIDTSSSLENKGKLNEELKRADA 85 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~---~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (507)
.+..+|+++|++|+|||||+++|.+.++..... +++|... .+... +..+.+|||||++.|..++...+..+|+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~---~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDi 161 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEA---GGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDI 161 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccC---CceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCE
Confidence 456799999999999999999999877644322 2233211 12222 2389999999999999988889999999
Q ss_pred EEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhH---HHHHHhcccCcEEEeCcccCC
Q 010548 86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG---PIMQQFREIETCVECSATTMI 162 (507)
Q Consensus 86 il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~SA~~g~ 162 (507)
+++|+|++++...+... .+..++.. ++|+++++||+|+...... .....+. .....++...+++++||++|.
T Consensus 162 aILVVda~dgv~~qT~e--~i~~~~~~--~vPiIVviNKiDl~~~~~e-~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIE--AISHAKAA--NVPIIVAINKIDKPEANPD-RVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEEEECCCCCCHhHHH--HHHHHHHc--CCCEEEEEECcccccCCHH-HHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 99999998754333332 22333444 7999999999999653211 0111111 011222222368999999999
Q ss_pred CchHHHHHHHH
Q 010548 163 QVPDVFYYAQK 173 (507)
Q Consensus 163 gi~~l~~~i~~ 173 (507)
|++++++.|..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999998864
No 200
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.72 E-value=4.9e-17 Score=175.42 Aligned_cols=162 Identities=14% Similarity=0.182 Sum_probs=111.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CC---CCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCC
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP-PV---HAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~-~~---~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (507)
..+..+|+|+|++++|||||+++|.+..+..... +. ...+.........+..+.+|||||+..|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 3456799999999999999999999877643321 11 1111111122234689999999999999999989999999
Q ss_pred EEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHH---HHHHhcccCcEEEeCcccC
Q 010548 85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP---IMQQFREIETCVECSATTM 161 (507)
Q Consensus 85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~SA~~g 161 (507)
++|+|+|++++...+... .+..+... ++|+|+|+||+|+...... .....+.. +...++...+++++||++|
T Consensus 321 iaILVVDA~dGv~~QT~E--~I~~~k~~--~iPiIVViNKiDl~~~~~e-~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 321 IAILIIAADDGVKPQTIE--AINYIQAA--NVPIIVAINKIDKANANTE-RIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEEEECcCCCChhhHH--HHHHHHhc--CceEEEEEECCCccccCHH-HHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 999999998864433332 22334444 7999999999999753211 11111111 1223343347999999999
Q ss_pred CCchHHHHHHHHHH
Q 010548 162 IQVPDVFYYAQKAV 175 (507)
Q Consensus 162 ~gi~~l~~~i~~~i 175 (507)
.|++++++.|....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999987653
No 201
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.72 E-value=6.8e-17 Score=151.10 Aligned_cols=164 Identities=17% Similarity=0.136 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCc---ccC---------------------------------
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPD---FYP--------------------------------- 56 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~---~~~--------------------------------- 56 (507)
++|+++|+.|+|||||+..+.+............+.++... +.+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47999999999999999999765211100000011110000 000
Q ss_pred CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccch
Q 010548 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL 136 (507)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~ 136 (507)
....+.+|||||++.+.......+..+|++++|+|++++........ .+..+.... ..|+++|+||+|+.........
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~-~l~~~~~~~-~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSE-HLAALEIMG-LKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHH-HHHHHHHcC-CCcEEEEEEchhccCHHHHHHH
Confidence 12689999999988877777778889999999999987411111111 222233331 3579999999999753211001
Q ss_pred hhhhHHHHHHhc-ccCcEEEeCcccCCCchHHHHHHHHHHcCC
Q 010548 137 EEVMGPIMQQFR-EIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 137 ~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~ 178 (507)
.+.+..+...+. ...+++++||++|.|++++++.|.+.+..|
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 122222222211 123689999999999999999998876554
No 202
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.72 E-value=1e-16 Score=171.57 Aligned_cols=160 Identities=18% Similarity=0.158 Sum_probs=114.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-------CCCCCCC-----CCCeeeC-----Ccc---cCCceEEEEEeCCCCcc
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESV-------PEKVPPV-----HAPTRLP-----PDF---YPDRVPVTIIDTSSSLE 71 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~-------~~~~~~~-----~~~~t~~-----~~~---~~~~~~~~i~Dt~G~~~ 71 (507)
..+|+|+|+.++|||||+++|+.... ...+... ..+.|+. ..+ +...+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 35799999999999999999987531 1111111 1122211 111 23358899999999999
Q ss_pred chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc-
Q 010548 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI- 150 (507)
Q Consensus 72 ~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~- 150 (507)
|...+..+++.+|++|+|+|++++.+.+.... |...+. . ++|+++|+||+|+.... .......+...++..
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~-~~~~~~-~--~ipiIiViNKiDl~~~~----~~~~~~el~~~lg~~~ 154 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLAN-VYLALE-N--DLEIIPVINKIDLPSAD----PERVKKEIEEVIGLDA 154 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHH-HHHHHH-c--CCCEEEEEECcCCCccC----HHHHHHHHHHHhCCCc
Confidence 99889999999999999999999877776654 544332 3 68999999999986532 222334444444421
Q ss_pred CcEEEeCcccCCCchHHHHHHHHHHcCCC
Q 010548 151 ETCVECSATTMIQVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 151 ~~~~~~SA~~g~gi~~l~~~i~~~i~~~~ 179 (507)
..++++||++|.|++++++.|.+.+..|.
T Consensus 155 ~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 155 SEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred ceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 14799999999999999999998876553
No 203
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.71 E-value=8.7e-18 Score=140.55 Aligned_cols=84 Identities=30% Similarity=0.471 Sum_probs=80.4
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+|.+|||+||||||||+.+|..+.|+..|..|+|.++.++++.++|..++++||||||+++|+.+. ..||+..+++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtit--styyrgthgv 84 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTIT--STYYRGTHGV 84 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHH--HHHccCCceE
Confidence 45789999999999999999999999999999999999999999999999999999999999999998 6799999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 85 ~vVYDV 90 (198)
T KOG0079|consen 85 IVVYDV 90 (198)
T ss_pred EEEEEC
Confidence 999996
No 204
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.71 E-value=1.4e-16 Score=173.56 Aligned_cols=157 Identities=19% Similarity=0.177 Sum_probs=110.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC---cccCCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP---DFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (507)
..+...|+|+|+.++|||||+++|.+..+.... ..++|... .+.+.+..++||||||+..|..++...++.+|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e---~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDi 363 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGE---AGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDI 363 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccc---cCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCE
Confidence 456688999999999999999999887654332 12233111 233446789999999999999999889999999
Q ss_pred EEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhh---HHHHHHhcccCcEEEeCcccCC
Q 010548 86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM---GPIMQQFREIETCVECSATTMI 162 (507)
Q Consensus 86 il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~SA~~g~ 162 (507)
+|+|||++++...+... .+..++.. ++|+|+++||+|+...... .....+ ..+...++...+++++||++|.
T Consensus 364 aILVVdAddGv~~qT~e--~i~~a~~~--~vPiIVviNKiDl~~a~~e-~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~ 438 (787)
T PRK05306 364 VVLVVAADDGVMPQTIE--AINHAKAA--GVPIIVAINKIDKPGANPD-RVKQELSEYGLVPEEWGGDTIFVPVSAKTGE 438 (787)
T ss_pred EEEEEECCCCCCHhHHH--HHHHHHhc--CCcEEEEEECccccccCHH-HHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence 99999999854333322 22334444 7999999999999653211 011111 1122333333479999999999
Q ss_pred CchHHHHHHHH
Q 010548 163 QVPDVFYYAQK 173 (507)
Q Consensus 163 gi~~l~~~i~~ 173 (507)
||+++++.|..
T Consensus 439 GI~eLle~I~~ 449 (787)
T PRK05306 439 GIDELLEAILL 449 (787)
T ss_pred CchHHHHhhhh
Confidence 99999998864
No 205
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.71 E-value=2.7e-16 Score=172.20 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=112.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCccchhh----------hH
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLENKGK----------LN 77 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~ 77 (507)
+.++|+++|+||||||||+|+|++.+. .....+++|. ...+...+.++.+|||||...+... ..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~---~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~ 78 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ---RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC---ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHH
Confidence 457999999999999999999998764 2233355553 2334567789999999998755321 12
Q ss_pred Hhh--ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEE
Q 010548 78 EEL--KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE 155 (507)
Q Consensus 78 ~~~--~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (507)
.++ ..+|++++|+|+++.+.. + +|...+.+. ++|+++|+||+|+.+.+.. ....+.+.+.++. ++++
T Consensus 79 ~~l~~~~aD~vI~VvDat~ler~--l--~l~~ql~e~--giPvIvVlNK~Dl~~~~~i---~id~~~L~~~LG~--pVvp 147 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLERN--L--YLTLQLLEL--GIPCIVALNMLDIAEKQNI---RIDIDALSARLGC--PVIP 147 (772)
T ss_pred HHHhccCCCEEEEEecCCcchhh--H--HHHHHHHHc--CCCEEEEEEchhhhhccCc---HHHHHHHHHHhCC--CEEE
Confidence 233 489999999999886432 2 255566665 7999999999998755443 2345667777774 7999
Q ss_pred eCcccCCCchHHHHHHHHHH
Q 010548 156 CSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 156 ~SA~~g~gi~~l~~~i~~~i 175 (507)
+||++|+|++++.+.+.+..
T Consensus 148 iSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 148 LVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEeecCCCHHHHHHHHHHhh
Confidence 99999999999999988765
No 206
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.70 E-value=3.5e-16 Score=146.16 Aligned_cols=117 Identities=19% Similarity=0.275 Sum_probs=89.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee-CCcccCCceEEEEEeCCCCccchhhhHHhhccC-CEEEEEEe
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL-PPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA-DAVVLTYA 91 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a-d~il~V~D 91 (507)
+|+++|++|||||||+++|....+...+++..+.... .......+..+.+|||||+..+...+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998876665554333221 111113467899999999999988888899998 99999999
Q ss_pred CCCh-hhHHHHHHhHHHHHHh---cCCCCcEEEEEecccCCCC
Q 010548 92 CNQQ-STLSRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGD 130 (507)
Q Consensus 92 ~~~~-~s~~~~~~~~~~~l~~---~~~~~piilv~NK~Dl~~~ 130 (507)
+++. .++..+..++...+.. ..+++|+++|+||+|+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9997 6777776644444332 2357999999999998764
No 207
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.70 E-value=1.5e-16 Score=170.22 Aligned_cols=157 Identities=17% Similarity=0.107 Sum_probs=109.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC---cccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP---DFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
+.|+++|++|+|||||+++|++............+.|+.. .+...+..+.+|||||++.|.......+..+|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 4699999999999999999997441111111122333221 1233458899999999998888888889999999999
Q ss_pred EeCCCh---hhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcEEEeCcccCCC
Q 010548 90 YACNQQ---STLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVECSATTMIQ 163 (507)
Q Consensus 90 ~D~~~~---~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~SA~~g~g 163 (507)
+|++++ .+.+.+ ..++.. ++| +++|+||+|+.+........+.+..+...++. ..+++++||++|.|
T Consensus 81 VDa~~G~~~qT~ehl-----~il~~l--gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~G 153 (581)
T TIGR00475 81 VDADEGVMTQTGEHL-----AVLDLL--GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQG 153 (581)
T ss_pred EECCCCCcHHHHHHH-----HHHHHc--CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCC
Confidence 999984 444333 334444 677 99999999997643220123344455554432 24799999999999
Q ss_pred chHHHHHHHHHHc
Q 010548 164 VPDVFYYAQKAVL 176 (507)
Q Consensus 164 i~~l~~~i~~~i~ 176 (507)
++++++.|...+.
T Consensus 154 I~eL~~~L~~l~~ 166 (581)
T TIGR00475 154 IGELKKELKNLLE 166 (581)
T ss_pred chhHHHHHHHHHH
Confidence 9999998877653
No 208
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.6e-16 Score=131.86 Aligned_cols=162 Identities=9% Similarity=0.059 Sum_probs=123.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+.++|+++|-.++||||++..|.-+.....+|++...+. .+..+++.+++||.+|++..+.+++.|+.+..++|||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnve---tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE---TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCcccccccceeEE---EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 4578999999999999999999998775555665443333 3346789999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 168 (507)
+|..+++..+..++.+...|.... .+.|+++.+||.|++..... .......++-.--+..-.+.++||.+|.|+.+-+
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~p-qei~d~leLe~~r~~~W~vqp~~a~~gdgL~egl 170 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKP-QEIQDKLELERIRDRNWYVQPSCALSGDGLKEGL 170 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCH-HHHHHHhccccccCCccEeeccccccchhHHHHH
Confidence 999999888888876776665432 37899999999999987655 1111111111111111146889999999999999
Q ss_pred HHHHHHH
Q 010548 169 YYAQKAV 175 (507)
Q Consensus 169 ~~i~~~i 175 (507)
.++.+.+
T Consensus 171 swlsnn~ 177 (180)
T KOG0071|consen 171 SWLSNNL 177 (180)
T ss_pred HHHHhhc
Confidence 9988754
No 209
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.67 E-value=4.8e-16 Score=148.99 Aligned_cols=94 Identities=13% Similarity=0.113 Sum_probs=72.0
Q ss_pred ccchhhhHHhhccCCEEEEEEeCCChh-hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc
Q 010548 70 LENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR 148 (507)
Q Consensus 70 ~~~~~~~~~~~~~ad~il~V~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 148 (507)
+++..+.+.+++++|++++|||++++. ++..+.. |+..+... ++|+++|+||+||...... ..+....+. ..+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r-~l~~~~~~--~i~~vIV~NK~DL~~~~~~--~~~~~~~~~-~~g 97 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDR-FLVVAEAQ--NIEPIIVLNKIDLLDDEDM--EKEQLDIYR-NIG 97 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHH-HHHHHHHC--CCCEEEEEECcccCCCHHH--HHHHHHHHH-HCC
Confidence 466777778999999999999999887 8888875 88777654 8999999999999754332 222233332 343
Q ss_pred ccCcEEEeCcccCCCchHHHHHH
Q 010548 149 EIETCVECSATTMIQVPDVFYYA 171 (507)
Q Consensus 149 ~~~~~~~~SA~~g~gi~~l~~~i 171 (507)
.+++++||++|.|++++|+.+
T Consensus 98 --~~v~~~SAktg~gi~eLf~~l 118 (245)
T TIGR00157 98 --YQVLMTSSKNQDGLKELIEAL 118 (245)
T ss_pred --CeEEEEecCCchhHHHHHhhh
Confidence 268999999999999988654
No 210
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.67 E-value=7.3e-16 Score=163.89 Aligned_cols=158 Identities=20% Similarity=0.180 Sum_probs=103.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC----CCCCeeeCCccc--------------CCceEEEEEeCCCCccch
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPP----VHAPTRLPPDFY--------------PDRVPVTIIDTSSSLENK 73 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~----~~~~~t~~~~~~--------------~~~~~~~i~Dt~G~~~~~ 73 (507)
...|+++|++|+|||||+|+|.+..+....+. ....+....+.. .....+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 34699999999999999999998876443222 111111111110 011238899999999999
Q ss_pred hhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc---cch--------h---hh
Q 010548 74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA---TSL--------E---EV 139 (507)
Q Consensus 74 ~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~---~~~--------~---~~ 139 (507)
.+...+++.+|++++|+|++++.+.+... .+..++.. ++|+++|+||+|+...... ... . ..
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e--~i~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~ 159 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQE--ALNILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQN 159 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHH--HHHHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHH
Confidence 98888999999999999999843333322 23334444 7899999999999642100 000 0 00
Q ss_pred --------hHHHH------------HHhcccCcEEEeCcccCCCchHHHHHHHH
Q 010548 140 --------MGPIM------------QQFREIETCVECSATTMIQVPDVFYYAQK 173 (507)
Q Consensus 140 --------~~~~~------------~~~~~~~~~~~~SA~~g~gi~~l~~~i~~ 173 (507)
...+. ..++...+++++||++|+|+++|.++|..
T Consensus 160 ~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 160 LDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 00111 02233347999999999999999988764
No 211
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.67 E-value=4.5e-16 Score=146.14 Aligned_cols=151 Identities=17% Similarity=0.054 Sum_probs=97.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--C--------------------------CCCCCCee---eCCcccCCceEEE
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEK--V--------------------------PPVHAPTR---LPPDFYPDRVPVT 62 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~--~--------------------------~~~~~~~t---~~~~~~~~~~~~~ 62 (507)
+|+|+|++|+|||||+++|+...-... . .....++| ....+..++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999986442111 0 00002222 1123335677899
Q ss_pred EEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc--cchhhhh
Q 010548 63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--TSLEEVM 140 (507)
Q Consensus 63 i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~ 140 (507)
+|||||+.++......+++.+|++|+|+|++++..-.... ....++... ..++|+|+||+|+...... ......+
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~--~~~~~~~~~-~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRR--HSYILSLLG-IRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHH--HHHHHHHcC-CCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 9999998877666677889999999999998864322221 333344431 2457889999998753211 0112233
Q ss_pred HHHHHHhcc-cCcEEEeCcccCCCchHH
Q 010548 141 GPIMQQFRE-IETCVECSATTMIQVPDV 167 (507)
Q Consensus 141 ~~~~~~~~~-~~~~~~~SA~~g~gi~~l 167 (507)
..+...++. ..++++|||++|.|+.+.
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 444455542 125899999999999853
No 212
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.67 E-value=6.2e-16 Score=137.42 Aligned_cols=151 Identities=21% Similarity=0.151 Sum_probs=101.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---Cccc-CCceEEEEEeCCCCccchh-------hhHHhhccCCE
Q 010548 17 VVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFY-PDRVPVTIIDTSSSLENKG-------KLNEELKRADA 85 (507)
Q Consensus 17 ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~-~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ad~ 85 (507)
|+|.+|+|||||++++++...... ......+.. .... .....+.+|||||...... ....+++.+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIV--SPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccccc--CCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCE
Confidence 589999999999999998764321 111112211 1111 1267899999999875543 33457899999
Q ss_pred EEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 86 il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
+++|+|+++..+..... +....... +.|+++|+||+|+...... .................+++++||+++.|+.
T Consensus 79 il~v~~~~~~~~~~~~~--~~~~~~~~--~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~ 153 (163)
T cd00880 79 ILFVVDADLRADEEEEK--LLELLRER--GKPVLLVLNKIDLLPEEEE-EELLELRLLILLLLLGLPVIAVSALTGEGID 153 (163)
T ss_pred EEEEEeCCCCCCHHHHH--HHHHHHhc--CCeEEEEEEccccCChhhH-HHHHHHHHhhcccccCCceEEEeeeccCCHH
Confidence 99999999987766654 44444444 7999999999999765433 1110001112222223479999999999999
Q ss_pred HHHHHHHHH
Q 010548 166 DVFYYAQKA 174 (507)
Q Consensus 166 ~l~~~i~~~ 174 (507)
++++.+.+.
T Consensus 154 ~l~~~l~~~ 162 (163)
T cd00880 154 ELREALIEA 162 (163)
T ss_pred HHHHHHHhh
Confidence 999998764
No 213
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.67 E-value=9.2e-16 Score=141.95 Aligned_cols=150 Identities=16% Similarity=0.141 Sum_probs=100.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCC--------C-----CCCCCCCee---eCCcccCCceEEEEEeCCCCccchhh
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPE--------K-----VPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGK 75 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~--------~-----~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~ 75 (507)
.++|+++|+.++|||||+++|+...... . ......+.| ....+..++..+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 5799999999999999999998641000 0 000112223 12234456788999999999888777
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCc-cchhhhhHHHHHHhcc---c
Q 010548 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE---I 150 (507)
Q Consensus 76 ~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~---~ 150 (507)
....+..+|++++|+|+..+...... .++..+... ++| +|+|+||+|+...... ....+++..+...++. .
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTR--EHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 78889999999999999876443332 255566665 676 7899999998643221 0122334444444432 1
Q ss_pred CcEEEeCcccCCCch
Q 010548 151 ETCVECSATTMIQVP 165 (507)
Q Consensus 151 ~~~~~~SA~~g~gi~ 165 (507)
.+++++||++|.|+.
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 379999999999864
No 214
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=99.67 E-value=6.5e-17 Score=122.87 Aligned_cols=70 Identities=47% Similarity=0.877 Sum_probs=66.8
Q ss_pred CCCCCccccccccCCCCccchHhHHhhhhhhhhcCHHHHHHHHHhhCCCC-----Cccccceeccccchhhhhcc
Q 010548 349 PWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGG-----DPAAALRVTRKRSVDRKKQQ 418 (507)
Q Consensus 349 p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~d~~~~l~~l~~lg~~~-----~~~~~~~~~~~~~~~~~~~~ 418 (507)
||....|+.++++|+.|.||++||+|+|.|++++||+.+++||+|+||++ ++..++.|+|+|+.++++++
T Consensus 1 PW~~~~~~~~~~~n~~G~iTl~gfLa~W~l~T~ld~~~tle~L~YLGy~~~~~~~~~~~Ai~VTr~R~~d~~k~~ 75 (76)
T PF08355_consen 1 PWIEPDFPDSVVTNEKGWITLQGFLAQWSLTTLLDPKRTLEYLAYLGYPGLSEQDSQTSAITVTRPRRLDRKKGQ 75 (76)
T ss_pred CCCCCCCcceeEEcCCCcCcHHHHHHHHHHHHHhCHHHHHHHHhhcCCCCccCCCCchhheEEcCchhhhhhccC
Confidence 89889999999999999999999999999999999999999999999998 88999999999999887754
No 215
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.5e-16 Score=137.83 Aligned_cols=163 Identities=17% Similarity=0.301 Sum_probs=130.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCccc-CC-ceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY-PD-RVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~-~~-~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
...+|++++|+.|.||||+++|.+.+.|...++++..-...+..+. +. .+++..|||+|++.+..+...++-.+.+.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 4689999999999999999999999999888766444333332332 22 599999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
++||++.+.++.++.. |...+.+.+.++||+++|||.|....... ...+.. -.+..+.++++||+++.|+..-
T Consensus 88 imFdVtsr~t~~n~~r-whrd~~rv~~NiPiv~cGNKvDi~~r~~k---~k~v~~---~rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPR-WHRDLVRVRENIPIVLCGNKVDIKARKVK---AKPVSF---HRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred EEeeeeehhhhhcchH-HHHHHHHHhcCCCeeeeccceeccccccc---ccccee---eecccceeEEeecccccccccc
Confidence 9999999999999986 99998888889999999999998654211 011111 1111236999999999999999
Q ss_pred HHHHHHHHcCCC
Q 010548 168 FYYAQKAVLHPT 179 (507)
Q Consensus 168 ~~~i~~~i~~~~ 179 (507)
|.++.+.+....
T Consensus 161 Fl~LarKl~G~p 172 (216)
T KOG0096|consen 161 FLWLARKLTGDP 172 (216)
T ss_pred hHHHhhhhcCCC
Confidence 999999886544
No 216
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.9e-15 Score=135.82 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=112.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCc----------cchhhhHH
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL----------ENKGKLNE 78 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 78 (507)
......|+++|++|||||||||+|++++- -+..+..|+.|....+..-+-.+.++|.||.. ....++..
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~-LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKN-LARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcc-eeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 34567899999999999999999999662 23455667777555554333348999999964 23334456
Q ss_pred hhcc---CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccC--c-
Q 010548 79 ELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE--T- 152 (507)
Q Consensus 79 ~~~~---ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~- 152 (507)
|++. -.++++++|+..+....+. ..++.+... ++|+++|+||+|.....+. .......++.+.... .
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~~~---~k~l~~v~~~l~~~~~~~~ 172 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKSER---NKQLNKVAEELKKPPPDDQ 172 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChhHH---HHHHHHHHHHhcCCCCccc
Confidence 6643 4678899998887555443 378888887 8999999999998875433 122333343332211 2
Q ss_pred -EEEeCcccCCCchHHHHHHHHHH
Q 010548 153 -CVECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 153 -~~~~SA~~g~gi~~l~~~i~~~i 175 (507)
++..|+..+.|++++...|.+.+
T Consensus 173 ~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 173 WVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred eEEEEecccccCHHHHHHHHHHHh
Confidence 78899999999999999887765
No 217
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.66 E-value=2.5e-16 Score=133.00 Aligned_cols=164 Identities=19% Similarity=0.255 Sum_probs=126.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
-.+||.++|++.+|||||+-.++++.+.+.+..... +.. ....+....+.+.|||.+|++++.++++.+..++-+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 368999999999999999999999887544322111 111 333444567899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc---cchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA---TSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
+||.+.+.++.++.+ |+...+..+...--|+||+|-|+--.-.. .........+++-++. +.+.||+.+..||.
T Consensus 99 mFDLt~r~TLnSi~~-WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA--sL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKE-WYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNA--SLFFCSTSHSINVQ 175 (205)
T ss_pred EEecCchHHHHHHHH-HHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC--cEEEeeccccccHH
Confidence 999999999999997 99999988654444789999996433211 0223344556666654 78999999999999
Q ss_pred HHHHHHHHHHcC
Q 010548 166 DVFYYAQKAVLH 177 (507)
Q Consensus 166 ~l~~~i~~~i~~ 177 (507)
.+|..+...+..
T Consensus 176 KIFK~vlAklFn 187 (205)
T KOG1673|consen 176 KIFKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHHHhC
Confidence 999988777643
No 218
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.65 E-value=1.7e-15 Score=144.38 Aligned_cols=148 Identities=17% Similarity=0.182 Sum_probs=97.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccch-------hhhHHhhccC
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENK-------GKLNEELKRA 83 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~a 83 (507)
+|+++|.+|||||||+|+|++...... ..+.+| ....+...+..+++|||||+.+.. .....+++.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~---~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVA---AYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc---CCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 799999999999999999998763211 111122 122233457889999999975432 1234578999
Q ss_pred CEEEEEEeCCChhh-HHHHHHhH----------------------------------------HHHHHh-----------
Q 010548 84 DAVVLTYACNQQST-LSRLSSYW----------------------------------------LPELRR----------- 111 (507)
Q Consensus 84 d~il~V~D~~~~~s-~~~~~~~~----------------------------------------~~~l~~----------- 111 (507)
|++++|+|++++.. ...+.+.+ ...+++
T Consensus 79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 99999999987642 22221100 011111
Q ss_pred --------------cCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548 112 --------------LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 112 --------------~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i 175 (507)
....+|+++|+||+|+.... +...++.. .+++++||++|.|++++++.|.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~-------~~~~~~~~----~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIE-------ELDLLARQ----PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCCHH-------HHHHHhcC----CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 11237999999999986432 22233332 2589999999999999999998764
No 219
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.65 E-value=7.3e-16 Score=165.15 Aligned_cols=143 Identities=18% Similarity=0.147 Sum_probs=102.3
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccchhh------hHHhh--ccCCEEE
Q 010548 19 GDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKGK------LNEEL--KRADAVV 87 (507)
Q Consensus 19 G~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~--~~ad~il 87 (507)
|++|||||||+|++++.++. ....+++|.. ..+..++.++++|||||+.++... ...++ +.+|+++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~---v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI 77 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT---VGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV 77 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe---ecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence 89999999999999987642 2223444422 223345677999999998766543 23333 4799999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
+|+|+++.+. .+ ++...+.+. ++|+++|+||+|+.++... . ...+.+.+.++. +++++||++|.|++++
T Consensus 78 ~VvDat~ler--~l--~l~~ql~~~--~~PiIIVlNK~Dl~~~~~i-~--~d~~~L~~~lg~--pvv~tSA~tg~Gi~eL 146 (591)
T TIGR00437 78 NVVDASNLER--NL--YLTLQLLEL--GIPMILALNLVDEAEKKGI-R--IDEEKLEERLGV--PVVPTSATEGRGIERL 146 (591)
T ss_pred EEecCCcchh--hH--HHHHHHHhc--CCCEEEEEehhHHHHhCCC-h--hhHHHHHHHcCC--CEEEEECCCCCCHHHH
Confidence 9999987532 11 144444444 7999999999998765443 2 234566677763 7999999999999999
Q ss_pred HHHHHHHH
Q 010548 168 FYYAQKAV 175 (507)
Q Consensus 168 ~~~i~~~i 175 (507)
++.+.+.+
T Consensus 147 ~~~i~~~~ 154 (591)
T TIGR00437 147 KDAIRKAI 154 (591)
T ss_pred HHHHHHHh
Confidence 99998765
No 220
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.65 E-value=2.3e-15 Score=161.44 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=112.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCC--C-----CCCCC-----CCCeeeC-----Ccc---cCCceEEEEEeCCCCc
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVP--E-----KVPPV-----HAPTRLP-----PDF---YPDRVPVTIIDTSSSL 70 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~--~-----~~~~~-----~~~~t~~-----~~~---~~~~~~~~i~Dt~G~~ 70 (507)
+..+|+|+|+.++|||||+.+|+...-. . .+... ..+.|+. ..+ +..++.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 3458999999999999999999864211 0 01000 1122211 111 2346889999999999
Q ss_pred cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI 150 (507)
Q Consensus 71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (507)
++...+..+++.+|++|+|+|++++...+.... |... ... ++|+++|+||+|+.... .......+...++..
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~-~~~~-~~~--~lpiIvViNKiDl~~a~----~~~v~~ei~~~lg~~ 157 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLA-LEN--DLEIIPVLNKIDLPAAD----PERVKQEIEDVIGID 157 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHH-HHC--CCCEEEEEECCCCCccc----HHHHHHHHHHHhCCC
Confidence 999889999999999999999999866655543 4433 233 78999999999986532 122233444444321
Q ss_pred -CcEEEeCcccCCCchHHHHHHHHHHcCCC
Q 010548 151 -ETCVECSATTMIQVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 151 -~~~~~~SA~~g~gi~~l~~~i~~~i~~~~ 179 (507)
..++++||++|.|+++++++|.+.+..|.
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 14899999999999999999998876553
No 221
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.65 E-value=2e-15 Score=165.72 Aligned_cols=232 Identities=13% Similarity=0.058 Sum_probs=147.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCC--------------CCCeee---CCcccCCceEEEEEeCCCC
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPV--------------HAPTRL---PPDFYPDRVPVTIIDTSSS 69 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~--------------~~~~t~---~~~~~~~~~~~~i~Dt~G~ 69 (507)
...+..+|+|+|++|+|||||+++|+...-... .... ..++|+ ...+.+++.++.+|||||+
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~ 85 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH 85 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence 344567899999999999999999985332111 1000 112221 1233467889999999999
Q ss_pred ccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc
Q 010548 70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE 149 (507)
Q Consensus 70 ~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 149 (507)
.++......+++.+|++++|+|++++....... ++..+++. ++|+++|+||+|+.... .......+...++.
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~~~--~~p~ivviNK~D~~~~~----~~~~~~~i~~~l~~ 157 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET--VWRQANRY--EVPRIAFVNKMDKTGAN----FLRVVNQIKQRLGA 157 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH--HHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCC
Confidence 888888889999999999999999876655433 55556665 79999999999998642 23445555555543
Q ss_pred c--CcEEEeCcccCCCchHHHHHHHHHH-cCCCCCCC-------ccchhcccHHHHHHHHHHHhhccCC------CCCcc
Q 010548 150 I--ETCVECSATTMIQVPDVFYYAQKAV-LHPTAPLF-------DHDEQTLKPRCVRALKRIFIICDHD------MDGAL 213 (507)
Q Consensus 150 ~--~~~~~~SA~~g~gi~~l~~~i~~~i-~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l 213 (507)
. ...+++||.++ +..+++.+.... .++..... .........+++..|.+.....|++ ++..+
T Consensus 158 ~~~~~~ipis~~~~--~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~ 235 (689)
T TIGR00484 158 NAVPIQLPIGAEDN--FIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEEL 235 (689)
T ss_pred CceeEEeccccCCC--ceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCC
Confidence 2 13688898877 333222222211 11110000 0011111123334444444444442 34567
Q ss_pred ChhhhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCC
Q 010548 214 NDAELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDG 249 (507)
Q Consensus 214 ~~~el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~ 249 (507)
+.+++....++ +++++....|+..|++.|.+.+|+-
T Consensus 236 ~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP 281 (689)
T TIGR00484 236 TIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSP 281 (689)
T ss_pred CHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCc
Confidence 88888777665 4788999999999999999999974
No 222
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.65 E-value=1.8e-15 Score=136.27 Aligned_cols=156 Identities=17% Similarity=0.132 Sum_probs=96.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCcc----------chhhhHHhhc--
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----------NKGKLNEELK-- 81 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~-- 81 (507)
.|+++|++|||||||+|++++..+.....+.... +...........+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGK-TQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCc-ceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 4899999999999999999965554433332211 21111111122899999999643 2233334443
Q ss_pred -cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548 82 -RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (507)
Q Consensus 82 -~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (507)
..+++++++|.+...+..... ....+... +.|+++|+||+|+.................+......+++++||++
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~~--~~~~l~~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~ 155 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDLE--MLDWLEEL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLK 155 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHHH--HHHHHHHc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCC
Confidence 457899999988764333222 44445554 6899999999998643222011112222222112223789999999
Q ss_pred CCCchHHHHHHHHH
Q 010548 161 MIQVPDVFYYAQKA 174 (507)
Q Consensus 161 g~gi~~l~~~i~~~ 174 (507)
+.|+.++++.|.+.
T Consensus 156 ~~~~~~l~~~l~~~ 169 (170)
T cd01876 156 GQGIDELRALIEKW 169 (170)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998764
No 223
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.65 E-value=3.4e-15 Score=140.36 Aligned_cols=164 Identities=19% Similarity=0.199 Sum_probs=111.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchh----------
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKG---------- 74 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~---------- 74 (507)
...+.+.|+++|.||||||||.|.+++.+.... +....+| +...+..+...+.++||||...-..
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~v--S~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAV--SRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccc--cccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHh
Confidence 345678999999999999999999999885332 2112222 4445567788999999999752211
Q ss_pred --hhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc----------cchhhhhHH
Q 010548 75 --KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGP 142 (507)
Q Consensus 75 --~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~----------~~~~~~~~~ 142 (507)
....++..||++++|+|+++....-+.. .+..++.+. ++|-|+|.||+|......+ ........+
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 2235788999999999999743333222 555666553 7899999999998764221 000111122
Q ss_pred HHHHhcc---------------cCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548 143 IMQQFRE---------------IETCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 143 ~~~~~~~---------------~~~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
+..++.. ...+|.+||++|+||+++-++|...+.
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 3333322 224899999999999999999988764
No 224
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.65 E-value=1e-15 Score=159.28 Aligned_cols=158 Identities=18% Similarity=0.145 Sum_probs=102.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----------------------------CCCCCeeeC---CcccCCc
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP----------------------------PVHAPTRLP---PDFYPDR 58 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~----------------------------~~~~~~t~~---~~~~~~~ 58 (507)
.+.++|+++|++++|||||+++|+...-..... ....++|+. ..+..++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 467999999999999999999998543211000 002233322 2344668
Q ss_pred eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc--cch
Q 010548 59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--TSL 136 (507)
Q Consensus 59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~--~~~ 136 (507)
+.+.+|||||++.+.......+..+|++++|+|+++..++......++..++... ..|+++|+||+|+...... ...
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccccccHHHHHHH
Confidence 8999999999988776666678899999999999873122221111333444442 2469999999999753211 011
Q ss_pred hhhhHHHHHHhcc---cCcEEEeCcccCCCchHHH
Q 010548 137 EEVMGPIMQQFRE---IETCVECSATTMIQVPDVF 168 (507)
Q Consensus 137 ~~~~~~~~~~~~~---~~~~~~~SA~~g~gi~~l~ 168 (507)
.+.+..+...++. ..+++++||++|.|++++.
T Consensus 163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 2334444444442 1368999999999998754
No 225
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=5.1e-16 Score=129.94 Aligned_cols=88 Identities=22% Similarity=0.349 Sum_probs=82.4
Q ss_pred cccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccc
Q 010548 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (507)
Q Consensus 418 ~~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 497 (507)
+.-++.+|+.|+|++.||||||+.|+++..|.+.+..|.|.+|.++++.-+.+.+++++|||+|+++|+.+. -.|||+
T Consensus 16 qnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiT--TayyRg 93 (193)
T KOG0093|consen 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTIT--TAYYRG 93 (193)
T ss_pred ccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHH--HHHhhc
Confidence 345677999999999999999999999999999999999999999999988889999999999999999988 689999
Q ss_pred ccEEEEEEeC
Q 010548 498 CDVTIFVYDR 507 (507)
Q Consensus 498 ad~vilv~D~ 507 (507)
|+++|||||+
T Consensus 94 amgfiLmyDi 103 (193)
T KOG0093|consen 94 AMGFILMYDI 103 (193)
T ss_pred cceEEEEEec
Confidence 9999999996
No 226
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.64 E-value=2.5e-15 Score=142.04 Aligned_cols=153 Identities=20% Similarity=0.139 Sum_probs=103.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-----------CCCCeee-----CCc----------------------cc
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPP-----------VHAPTRL-----PPD----------------------FY 55 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~-----------~~~~~t~-----~~~----------------------~~ 55 (507)
||+++|+.++|||||+++|..+.+...... ...+.+. ... +.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997665432110 0011111 000 11
Q ss_pred CCceEEEEEeCCCCccchhhhHHhhc--cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc
Q 010548 56 PDRVPVTIIDTSSSLENKGKLNEELK--RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA 133 (507)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~--~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~ 133 (507)
..+..+.++||||++.+.......+. .+|++++|+|++.+.+.... .++..+... ++|+++|+||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~--~~l~~l~~~--~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTK--EHLGLALAL--NIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEECccccCHHHH
Confidence 23567999999999887665555554 78999999999877544333 367777766 7899999999998653222
Q ss_pred cchhhhhHHHHHHh---------------------------cccCcEEEeCcccCCCchHHHHHHHH
Q 010548 134 TSLEEVMGPIMQQF---------------------------REIETCVECSATTMIQVPDVFYYAQK 173 (507)
Q Consensus 134 ~~~~~~~~~~~~~~---------------------------~~~~~~~~~SA~~g~gi~~l~~~i~~ 173 (507)
......+.+.+ +...|++.+||.+|.|+++|...|..
T Consensus 157 ---~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 157 ---QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ---HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 22222222222 22348999999999999999987743
No 227
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.63 E-value=4.2e-15 Score=155.07 Aligned_cols=156 Identities=13% Similarity=0.082 Sum_probs=115.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccc------hhhhHHhh-
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLEN------KGKLNEEL- 80 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~~~- 80 (507)
+..+|+++|+||||||||+|+|++.+. .....+++| ....+..++.+++++|.||.... +...+.++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q---~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll 78 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQ---KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL 78 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCc---eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence 456799999999999999999998763 445555677 33445566778999999996532 22333444
Q ss_pred -ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 81 -KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 81 -~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
...|+++-|+|+++-+.--. +--++.+. ++|++++.|++|....... . -..+.+.+.+|. |++++||+
T Consensus 79 ~~~~D~ivnVvDAtnLeRnLy----ltlQLlE~--g~p~ilaLNm~D~A~~~Gi-~--ID~~~L~~~LGv--PVv~tvA~ 147 (653)
T COG0370 79 EGKPDLIVNVVDATNLERNLY----LTLQLLEL--GIPMILALNMIDEAKKRGI-R--IDIEKLSKLLGV--PVVPTVAK 147 (653)
T ss_pred cCCCCEEEEEcccchHHHHHH----HHHHHHHc--CCCeEEEeccHhhHHhcCC-c--ccHHHHHHHhCC--CEEEEEee
Confidence 46799999999998743221 33345555 8999999999998876554 2 234667777874 79999999
Q ss_pred cCCCchHHHHHHHHHHcCCCC
Q 010548 160 TMIQVPDVFYYAQKAVLHPTA 180 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i~~~~~ 180 (507)
+|.|++++.+.+.+....+..
T Consensus 148 ~g~G~~~l~~~i~~~~~~~~~ 168 (653)
T COG0370 148 RGEGLEELKRAIIELAESKTT 168 (653)
T ss_pred cCCCHHHHHHHHHHhcccccc
Confidence 999999999999887655543
No 228
>PRK10218 GTP-binding protein; Provisional
Probab=99.63 E-value=5.6e-15 Score=157.69 Aligned_cols=164 Identities=13% Similarity=0.111 Sum_probs=113.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCC-----------CCCCeee---CCcccCCceEEEEEeCCCCccchh
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATE--SVPEKVPP-----------VHAPTRL---PPDFYPDRVPVTIIDTSSSLENKG 74 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~--~~~~~~~~-----------~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~~~ 74 (507)
...+|+|+|+.++|||||+++|+.. .+...... ...+.++ ...+.++++++++|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 3468999999999999999999973 33221110 0112221 223446789999999999999999
Q ss_pred hhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc-----
Q 010548 75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE----- 149 (507)
Q Consensus 75 ~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~----- 149 (507)
.+..+++.+|++|+|+|++++...+... ++..+... ++|+++|+||+|+...+.. .....+..+...++.
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~--~l~~a~~~--gip~IVviNKiD~~~a~~~-~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRF--VTKKAFAY--GLKPIVVINKVDRPGARPD-WVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHH--HHHHHHHc--CCCEEEEEECcCCCCCchh-HHHHHHHHHHhccCcccccc
Confidence 9999999999999999998874443322 44455555 7899999999998765332 112222222211111
Q ss_pred cCcEEEeCcccCC----------CchHHHHHHHHHHcCCC
Q 010548 150 IETCVECSATTMI----------QVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 150 ~~~~~~~SA~~g~----------gi~~l~~~i~~~i~~~~ 179 (507)
..+++.+||++|. |+..+++.|...+..|.
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 1368999999998 58899999988876553
No 229
>PRK00007 elongation factor G; Reviewed
Probab=99.63 E-value=4.5e-15 Score=162.73 Aligned_cols=233 Identities=12% Similarity=0.084 Sum_probs=150.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-C--CC------------CCCCeee---CCcccCCceEEEEEeCCCCc
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-V--PP------------VHAPTRL---PPDFYPDRVPVTIIDTSSSL 70 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~--~~------------~~~~~t~---~~~~~~~~~~~~i~Dt~G~~ 70 (507)
..+..+|+|+|++|+|||||+++|+...-... . .. ...++|+ ...+.+.+..++++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 44567999999999999999999974221110 0 00 1122222 12334668899999999988
Q ss_pred cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI 150 (507)
Q Consensus 71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (507)
++.......++.+|++|+|+|+..+...+... .+..+.+. ++|+|+++||+|+.... .......+...++..
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~--~~~~~~~~--~~p~iv~vNK~D~~~~~----~~~~~~~i~~~l~~~ 158 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSET--VWRQADKY--KVPRIAFVNKMDRTGAD----FYRVVEQIKDRLGAN 158 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHH--HHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCC
Confidence 87777788899999999999998875555433 56666666 78999999999988642 334556666666552
Q ss_pred --CcEEEeCcccC-CCchHHHHHHHHHHc-CCCCCCCc-----cchhcccHHHHHHHHHHHhhccCC------CCCccCh
Q 010548 151 --ETCVECSATTM-IQVPDVFYYAQKAVL-HPTAPLFD-----HDEQTLKPRCVRALKRIFIICDHD------MDGALND 215 (507)
Q Consensus 151 --~~~~~~SA~~g-~gi~~l~~~i~~~i~-~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~~ 215 (507)
...+++||..+ .|+.+++........ ......+. ........+++..|-.....+|++ ++..++.
T Consensus 159 ~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~ 238 (693)
T PRK00007 159 PVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTE 238 (693)
T ss_pred eeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCH
Confidence 24688999887 556555532221110 00000000 000111112333333333334322 3567888
Q ss_pred hhhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCC
Q 010548 216 AELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDG 249 (507)
Q Consensus 216 ~el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~ 249 (507)
+++....++ +|+++....|++.+++.|.+.+|+-
T Consensus 239 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP 282 (693)
T PRK00007 239 EEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 282 (693)
T ss_pred HHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCCh
Confidence 898888774 6788999999999999999999974
No 230
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.63 E-value=3.8e-15 Score=159.97 Aligned_cols=159 Identities=14% Similarity=0.132 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc----cCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF----YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
+-|+++|+.++|||||+++|++............+.|+...+ ..++..+.+|||||++.|.......+..+|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 358999999999999999999744211111222344433222 1245678999999998887777788999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCccchhhhhHHHHHHhcc-cCcEEEeCcccCCCchH
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-IETCVECSATTMIQVPD 166 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~SA~~g~gi~~ 166 (507)
|+|++++...+... .+..++.. ++| +|+|+||+|+.+........+.+..+....+. ..+++++||++|.|+++
T Consensus 81 VVda~eg~~~qT~e--hl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 81 VVACDDGVMAQTRE--HLAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 99998853332222 33344444 456 57999999997532220112233333333321 23799999999999999
Q ss_pred HHHHHHHHH
Q 010548 167 VFYYAQKAV 175 (507)
Q Consensus 167 l~~~i~~~i 175 (507)
+++.|.+..
T Consensus 157 L~~~L~~~~ 165 (614)
T PRK10512 157 LREHLLQLP 165 (614)
T ss_pred HHHHHHHhh
Confidence 999998754
No 231
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.63 E-value=2.1e-15 Score=155.50 Aligned_cols=164 Identities=15% Similarity=0.115 Sum_probs=104.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCc-----------------------ccC------CceE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPD-----------------------FYP------DRVP 60 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~-----------------------~~~------~~~~ 60 (507)
++.++|+++|.+++|||||+++|.+............+.|+... .+. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 45789999999999999999999764221111111111111110 011 2468
Q ss_pred EEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChh-hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhh
Q 010548 61 VTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV 139 (507)
Q Consensus 61 ~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~ 139 (507)
+.+|||||+++|...+...+..+|++++|+|++++. ..+. .+ .+..+...+ .+|+++|+||+|+.+........+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt-~e-~l~~l~~~g-i~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-KE-HLMALEIIG-IKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch-HH-HHHHHHHcC-CCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999988887778888999999999999753 1111 11 223333332 3579999999999754221001122
Q ss_pred hHHHHHHh-cccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548 140 MGPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 140 ~~~~~~~~-~~~~~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
+..+.... ....+++++||++|.|++++++.|...+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 22222221 11236899999999999999999987654
No 232
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=6.6e-16 Score=128.17 Aligned_cols=86 Identities=22% Similarity=0.437 Sum_probs=81.8
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
..+.||.+|||+.|||||+|+++|..++|...-+.|+|+.|..+.+.+.|.+++++||||+|+++|+.+. ++|||+|.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravt--rsyyrgaa 85 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT--RSYYRGAA 85 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHH--HHHhcccc
Confidence 3567999999999999999999999999999999999999999999999999999999999999999988 78999999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
+.++|||+
T Consensus 86 galmvydi 93 (215)
T KOG0097|consen 86 GALMVYDI 93 (215)
T ss_pred ceeEEEEe
Confidence 99999996
No 233
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.62 E-value=2.8e-16 Score=133.80 Aligned_cols=84 Identities=27% Similarity=0.408 Sum_probs=77.8
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC-CCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
+.+++++||++-||||||+++|..++|..-++||.|++|..+.+... |..+++++||||||++|+++. .+|||++-+
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsit--ksyyrnsvg 84 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSIT--KSYYRNSVG 84 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHH--HHHhhcccc
Confidence 56899999999999999999999999999999999999887766555 678899999999999999998 789999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 85 vllvydi 91 (213)
T KOG0091|consen 85 VLLVYDI 91 (213)
T ss_pred eEEEEec
Confidence 9999996
No 234
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=9e-16 Score=132.51 Aligned_cols=166 Identities=14% Similarity=0.132 Sum_probs=117.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC---C----CCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhcc
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESV---P----EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR 82 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~---~----~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 82 (507)
...+.|+|+|..|+|||||+.++-.... . ..+.++..- ....+...+..+.+||.+|++..++++..||..
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgL--nig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGL--NIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccce--eecceeeccceeEEEEcCChHHHHHHHHHHHHH
Confidence 3468899999999999999988754321 0 112221111 112233347789999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc-cCcEEEeCccc
Q 010548 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-IETCVECSATT 160 (507)
Q Consensus 83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~SA~~ 160 (507)
++++|+|+|+++++.++.....+-..+.+. -.++|+++.+||.|+.+......... ....+...+. .+++.+|||.+
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~-~~~~~e~~~~rd~~~~pvSal~ 171 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDG-VFGLAELIPRRDNPFQPVSALT 171 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHH-HhhhhhhcCCccCccccchhhh
Confidence 999999999999988887766444444332 24899999999999987644411111 1111223322 24789999999
Q ss_pred CCCchHHHHHHHHHHcCC
Q 010548 161 MIQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 161 g~gi~~l~~~i~~~i~~~ 178 (507)
|+||++-.+|+.+.+...
T Consensus 172 gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 172 GEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cccHHHHHHHHHHHHhhc
Confidence 999999999999887543
No 235
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.62 E-value=1.6e-14 Score=129.45 Aligned_cols=90 Identities=9% Similarity=0.031 Sum_probs=58.4
Q ss_pred HHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEe
Q 010548 77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC 156 (507)
Q Consensus 77 ~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (507)
...++++|++++|+|++++..... ..+...+.....++|+|+|.||+|+..+.. .......+.+.+.. ..+.+
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~---~~~~~~~~~~~~~~--~~~~i 75 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV---TARWVKILSKEYPT--IAFHA 75 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH---HHHHHHHHhcCCcE--EEEEe
Confidence 356789999999999998743222 124455554433689999999999964311 11122222222211 24789
Q ss_pred CcccCCCchHHHHHHHH
Q 010548 157 SATTMIQVPDVFYYAQK 173 (507)
Q Consensus 157 SA~~g~gi~~l~~~i~~ 173 (507)
||+++.|++++++.+..
T Consensus 76 Sa~~~~~~~~L~~~l~~ 92 (157)
T cd01858 76 SINNPFGKGSLIQLLRQ 92 (157)
T ss_pred eccccccHHHHHHHHHH
Confidence 99999999998887643
No 236
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.61 E-value=5.5e-15 Score=157.96 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=113.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC--CCCCC-CC----------CCCCeeeC---CcccCCceEEEEEeCCCCccchhhh
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATES--VPEKV-PP----------VHAPTRLP---PDFYPDRVPVTIIDTSSSLENKGKL 76 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~--~~~~~-~~----------~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~~~ 76 (507)
.+|+|+|+.++|||||+++|+... +.... .. ...+.|+. ..+.++++++++|||||+.+|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 379999999999999999998632 21111 00 01122221 2345678999999999999998888
Q ss_pred HHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc-----cC
Q 010548 77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-----IE 151 (507)
Q Consensus 77 ~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~ 151 (507)
..+++.+|++++|+|++++...+. . .|+..+... ++|+|+|+||+|+...+.. ....++..+...++. ..
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~~qT-~-~~l~~a~~~--~ip~IVviNKiD~~~a~~~-~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPMPQT-R-FVLKKALEL--GLKPIVVINKIDRPSARPD-EVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCcHHH-H-HHHHHHHHC--CCCEEEEEECCCCCCcCHH-HHHHHHHHHHHhhccccccccC
Confidence 999999999999999987643222 2 366666665 7899999999998754322 112222222222211 13
Q ss_pred cEEEeCcccCC----------CchHHHHHHHHHHcCCC
Q 010548 152 TCVECSATTMI----------QVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 152 ~~~~~SA~~g~----------gi~~l~~~i~~~i~~~~ 179 (507)
+++++||++|. |+..+|+.|.+.+..|.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 68999999996 79999999999876553
No 237
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.61 E-value=5.4e-15 Score=139.38 Aligned_cols=157 Identities=15% Similarity=0.114 Sum_probs=101.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CCC-----CCCeeeC---Ccc-----cCCceEEEEEeCCCC
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKV-----------PPV-----HAPTRLP---PDF-----YPDRVPVTIIDTSSS 69 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~-----------~~~-----~~~~t~~---~~~-----~~~~~~~~i~Dt~G~ 69 (507)
+|+|+|+.|+|||||+++|+........ ... ..+.++. ..+ ....+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6999999999999999999976543221 000 0011110 011 134588999999999
Q ss_pred ccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC----------ccchhhh
Q 010548 70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN----------ATSLEEV 139 (507)
Q Consensus 70 ~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~ 139 (507)
.++......++..+|++++|+|+++..+.... .++..+... ++|+++|+||+|+..... .....+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~--~~~~~~~~~--~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~ 157 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE--RLIRHAILE--GLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE 157 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence 98888888899999999999999988766442 255555544 689999999999852110 0001122
Q ss_pred hHHHHHHhcc-----cC----cEEEeCcccCCCch--------HHHHHHHHH
Q 010548 140 MGPIMQQFRE-----IE----TCVECSATTMIQVP--------DVFYYAQKA 174 (507)
Q Consensus 140 ~~~~~~~~~~-----~~----~~~~~SA~~g~gi~--------~l~~~i~~~ 174 (507)
+..++..++. .. .+++.||+.+-++. ++++.|.+.
T Consensus 158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~ 209 (213)
T cd04167 158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSN 209 (213)
T ss_pred HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhh
Confidence 3333333322 01 27789999988776 555555443
No 238
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.61 E-value=8.2e-15 Score=151.04 Aligned_cols=167 Identities=14% Similarity=0.138 Sum_probs=104.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc-----------------c------C------Cc
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF-----------------Y------P------DR 58 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~-----------------~------~------~~ 58 (507)
...+.++|+++|+.++|||||+.+|.+............+.|+...+ . . ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 34567999999999999999999996532111111111122221111 0 0 03
Q ss_pred eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChh-hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchh
Q 010548 59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE 137 (507)
Q Consensus 59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~ 137 (507)
..+.+|||||++++..........+|++++|+|++++. ..+... .+..++... ..|+++|+||+|+.+........
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~--~l~~l~~~~-i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE--HLMALDIIG-IKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH--HHHHHHHcC-CCcEEEEEEeeccccchhHHHHH
Confidence 68999999998877665556667789999999999653 222222 222333331 24799999999997643220111
Q ss_pred hhhHHHHHHh-cccCcEEEeCcccCCCchHHHHHHHHHHcC
Q 010548 138 EVMGPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 138 ~~~~~~~~~~-~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~ 177 (507)
+.+..+.... ....+++++||++|.|++++++.|.+.+..
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 2222332221 112378999999999999999999886643
No 239
>PRK13351 elongation factor G; Reviewed
Probab=99.61 E-value=1.1e-14 Score=160.38 Aligned_cols=232 Identities=13% Similarity=0.091 Sum_probs=144.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC---------CC------CCCeeeC---CcccCCceEEEEEeCCCCcc
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP---------PV------HAPTRLP---PDFYPDRVPVTIIDTSSSLE 71 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~---------~~------~~~~t~~---~~~~~~~~~~~i~Dt~G~~~ 71 (507)
....+|+|+|+.|+|||||+++|+......... .+ ..+.|+. ..+.+.+..+++|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 456799999999999999999998643111000 00 0111211 13346688999999999998
Q ss_pred chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccC
Q 010548 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE 151 (507)
Q Consensus 72 ~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 151 (507)
+......+++.+|++++|+|++++.+..... .+..+... ++|+++|+||+|+... ........+...++...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~--~~~~~~~~--~~p~iiviNK~D~~~~----~~~~~~~~i~~~l~~~~ 157 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTET--VWRQADRY--GIPRLIFINKMDRVGA----DLFKVLEDIEERFGKRP 157 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHhc--CCCEEEEEECCCCCCC----CHHHHHHHHHHHHCCCe
Confidence 8888899999999999999999887666543 44555555 7999999999998764 24455566666666532
Q ss_pred cEEEeCcccCCCchHHHHHHHHHH-cCCCC---CCC-----ccchhcccHHHHHHHHHHHhhccCC------CCCccChh
Q 010548 152 TCVECSATTMIQVPDVFYYAQKAV-LHPTA---PLF-----DHDEQTLKPRCVRALKRIFIICDHD------MDGALNDA 216 (507)
Q Consensus 152 ~~~~~SA~~g~gi~~l~~~i~~~i-~~~~~---~~~-----~~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~~~ 216 (507)
-.+......+.++..+.+.+.... ..... ... .........+++..+-..+..+|++ ++..++.+
T Consensus 158 ~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~ 237 (687)
T PRK13351 158 LPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAE 237 (687)
T ss_pred EEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHH
Confidence 223333333433322222111111 00000 000 0000011112233333333333332 35678888
Q ss_pred hhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCC
Q 010548 217 ELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDG 249 (507)
Q Consensus 217 el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~ 249 (507)
+++...++ +|+++....|++.|++.|...+|+-
T Consensus 238 ~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP 280 (687)
T PRK13351 238 QLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSP 280 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCCh
Confidence 88888775 6788999999999999999999974
No 240
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.61 E-value=1.6e-14 Score=129.32 Aligned_cols=92 Identities=14% Similarity=0.014 Sum_probs=61.4
Q ss_pred hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCc
Q 010548 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIET 152 (507)
Q Consensus 73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (507)
..+.+..++++|++++|+|++++.+.... .+...+... ++|+++|+||+|+...... .....+....+ .+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~~--~~p~iiv~NK~Dl~~~~~~----~~~~~~~~~~~--~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLEL--GKKLLIVLNKADLVPKEVL----EKWKSIKESEG--IP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHhC--CCcEEEEEEhHHhCCHHHH----HHHHHHHHhCC--Cc
Confidence 34566778889999999999886543332 144444433 6899999999998542111 11112222222 26
Q ss_pred EEEeCcccCCCchHHHHHHHHH
Q 010548 153 CVECSATTMIQVPDVFYYAQKA 174 (507)
Q Consensus 153 ~~~~SA~~g~gi~~l~~~i~~~ 174 (507)
++.+||+++.|++++++.+.+.
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~ 94 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKEL 94 (156)
T ss_pred EEEEEccccccHHHHHHHHHHH
Confidence 8999999999999999887553
No 241
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=4.1e-15 Score=124.15 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=120.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+..++.++|--|+|||++..++.-.+.....|+...... .+..++.++++||.+|+-..+..++.|+.+.|++|+|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVV 93 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVV 93 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEEEE
Confidence 678999999999999999999987776666666443332 33457899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCcc--chhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNAT--SLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
|.+|+....-....+...+++.. .+..+++++||.|........ .....+..+.++ +..++++||.+|+|+++.
T Consensus 94 Dssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r---~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 94 DSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDR---IWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred eccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhh---eeEEEeeccccccCCcHH
Confidence 99998766555554666665432 367889999999987642220 011111222222 237899999999999999
Q ss_pred HHHHHHHHc
Q 010548 168 FYYAQKAVL 176 (507)
Q Consensus 168 ~~~i~~~i~ 176 (507)
++|+++.+.
T Consensus 171 ~DWL~~~l~ 179 (182)
T KOG0072|consen 171 MDWLQRPLK 179 (182)
T ss_pred HHHHHHHHh
Confidence 999988653
No 242
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.60 E-value=5.3e-15 Score=123.07 Aligned_cols=161 Identities=15% Similarity=0.209 Sum_probs=118.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
..+.+||.++|-.|+|||||+..|.+.....-.++.... +..+.+ .+.+++++||.+|+...+..+..|+.+.|++|+
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn-~k~v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFN-TKKVEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcc-eEEEee-cCcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 467899999999999999999999887632223332222 222222 346899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHH--HHHhcccCcEEEeCcccCCCch
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPI--MQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
|+|.+|..-|+++.+.+.+.+.... ..+|+++.+||.|+.....+ ++....+ ..--.....+-+|||.+++|+.
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~---eeia~klnl~~lrdRswhIq~csals~eg~~ 168 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV---EEIALKLNLAGLRDRSWHIQECSALSLEGST 168 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch---HHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence 9999999999988876666665432 36999999999998765443 1111111 1000111257899999999999
Q ss_pred HHHHHHHHH
Q 010548 166 DVFYYAQKA 174 (507)
Q Consensus 166 ~l~~~i~~~ 174 (507)
.-.+++++.
T Consensus 169 dg~~wv~sn 177 (185)
T KOG0074|consen 169 DGSDWVQSN 177 (185)
T ss_pred CcchhhhcC
Confidence 999988764
No 243
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=3.8e-14 Score=124.50 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=119.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCC----CCCCeeeCCccc----CCceEEEEEeCCCCccchhhhH
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPP----VHAPTRLPPDFY----PDRVPVTIIDTSSSLENKGKLN 77 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~---~~~----~~~~~t~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~ 77 (507)
.....||+|+|+.++||||++.++........ .+. ....+|...++. .++..+.++||||++++..++.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 45678999999999999999999998763111 111 112355555554 3457899999999999999999
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (507)
Q Consensus 78 ~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (507)
.+.+++.++|+++|.+.+.++ +... +++.+....+ +|+++++||.|+.+.... +.+.++.+.-....+.++++
T Consensus 87 ~l~~ga~gaivlVDss~~~~~-~a~~-ii~f~~~~~~-ip~vVa~NK~DL~~a~pp----e~i~e~l~~~~~~~~vi~~~ 159 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF-HAEE-IIDFLTSRNP-IPVVVAINKQDLFDALPP----EKIREALKLELLSVPVIEID 159 (187)
T ss_pred HHhCCcceEEEEEecCCCcch-HHHH-HHHHHhhccC-CCEEEEeeccccCCCCCH----HHHHHHHHhccCCCceeeee
Confidence 999999999999999999988 3332 7777776632 999999999999886544 33333332221123799999
Q ss_pred cccCCCchHHHHHHHHH
Q 010548 158 ATTMIQVPDVFYYAQKA 174 (507)
Q Consensus 158 A~~g~gi~~l~~~i~~~ 174 (507)
|..++|..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999988887765
No 244
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.60 E-value=3.7e-15 Score=138.80 Aligned_cols=82 Identities=22% Similarity=0.420 Sum_probs=76.1
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
++|+++|++|||||||+++|+++.|...+.+|.+.++..+.+.+++...++.+|||+|+++|.+++ ..|+++||++++
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~--~~y~~~ad~iIl 78 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT--SAYYRSAKGIIL 78 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHH--HHHhcCCCEEEE
Confidence 379999999999999999999999999999999988888888888778899999999999999988 789999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 VfDv 82 (202)
T cd04120 79 VYDI 82 (202)
T ss_pred EEEC
Confidence 9996
No 245
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.59 E-value=4.3e-15 Score=154.54 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=102.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC--CCCCC----------C----------------CCCCCeee---CCcccCC
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKV----------P----------------PVHAPTRL---PPDFYPD 57 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~--~~~~~----------~----------------~~~~~~t~---~~~~~~~ 57 (507)
..+.++|+++|+.++|||||+++|+... ..... . ....++|+ ...+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 4567899999999999999999998632 11000 0 00112221 1234456
Q ss_pred ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHH-hHHHHHHhcCCCCcEEEEEecccCCCCCCc--c
Q 010548 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSS-YWLPELRRLEIKVPIIVAGCKLDLRGDHNA--T 134 (507)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~-~~~~~l~~~~~~~piilv~NK~Dl~~~~~~--~ 134 (507)
++.+.+|||||++++.......+..+|++++|+|++++.+...... .+....+.. ...|+|+|+||+|+.+.... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHHH
Confidence 7899999999988877666677899999999999998854321111 122223333 23579999999999742211 0
Q ss_pred chhhhhHHHHHHhcc---cCcEEEeCcccCCCchHHH
Q 010548 135 SLEEVMGPIMQQFRE---IETCVECSATTMIQVPDVF 168 (507)
Q Consensus 135 ~~~~~~~~~~~~~~~---~~~~~~~SA~~g~gi~~l~ 168 (507)
....++..+.+..+. ..++++|||++|.|+.+.+
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 112344455555542 2378999999999998744
No 246
>PRK12739 elongation factor G; Reviewed
Probab=99.58 E-value=3.6e-14 Score=155.81 Aligned_cols=230 Identities=12% Similarity=0.100 Sum_probs=143.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-C--CC------------CCCCeeeC---CcccCCceEEEEEeCCCCcc
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-V--PP------------VHAPTRLP---PDFYPDRVPVTIIDTSSSLE 71 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~--~~------------~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~ 71 (507)
.+..+|+|+|++|+|||||+++|+...-... . .. ...++|+. ..+.+++.++.++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 4567899999999999999999985321110 0 00 11222321 23346788999999999988
Q ss_pred chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc-
Q 010548 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI- 150 (507)
Q Consensus 72 ~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~- 150 (507)
+...+..+++.+|++|+|+|+.++...... .++..+.+. ++|+|+++||+|+.... .......+...++..
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~~~----~~~~~~~i~~~l~~~~ 157 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIGAD----FFRSVEQIKDRLGANA 157 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCc
Confidence 877888899999999999999887544433 356666665 78999999999998642 334445555555431
Q ss_pred -CcEEEeCcccCCC-chHHHHHHHHHHcCCCC---CCCc--cchhcccH---HHHHHHHHHHhhccCC------CCCccC
Q 010548 151 -ETCVECSATTMIQ-VPDVFYYAQKAVLHPTA---PLFD--HDEQTLKP---RCVRALKRIFIICDHD------MDGALN 214 (507)
Q Consensus 151 -~~~~~~SA~~g~g-i~~l~~~i~~~i~~~~~---~~~~--~~~~~~~~---~~~~~l~~~~~~~d~~------~d~~l~ 214 (507)
...+++|+..+.+ +-++...-.. ..... ..+. .......+ +++..|-+....+|.+ ++..++
T Consensus 158 ~~~~iPis~~~~f~g~vd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~ 235 (691)
T PRK12739 158 VPIQLPIGAEDDFKGVIDLIKMKAI--IWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEIT 235 (691)
T ss_pred eeEEecccccccceEEEEcchhhhh--hccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCC
Confidence 2357889877642 2222221111 11110 0000 00001111 2222333333333332 234577
Q ss_pred hhhhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCC
Q 010548 215 DAELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDG 249 (507)
Q Consensus 215 ~~el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~ 249 (507)
.++++...++ +++++....+++.+++.|.+.+|+-
T Consensus 236 ~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP 280 (691)
T PRK12739 236 EEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSP 280 (691)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCCh
Confidence 7888877774 7788999999999999999999974
No 247
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.58 E-value=3.6e-14 Score=132.00 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=99.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCC-ccc-CCceEEEEEeCCCCccchhhhHH-----hhcc
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPP-DFY-PDRVPVTIIDTSSSLENKGKLNE-----ELKR 82 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t~~~-~~~-~~~~~~~i~Dt~G~~~~~~~~~~-----~~~~ 82 (507)
.+||+++|++|||||||+|+|++..+... .+.....++... .+. .....+.+|||||.......... .+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 37999999999999999999998664332 111111112111 111 11346899999998643332222 2577
Q ss_pred CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCcc------chhhhhH----HHHHHhc----
Q 010548 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT------SLEEVMG----PIMQQFR---- 148 (507)
Q Consensus 83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~------~~~~~~~----~~~~~~~---- 148 (507)
+|++++|.| ++ +...+..|++.+++. ++|+++|+||+|+....... ...+... .+...++
T Consensus 81 ~d~~l~v~~--~~--~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~ 154 (197)
T cd04104 81 YDFFIIISS--TR--FSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV 154 (197)
T ss_pred cCEEEEEeC--CC--CCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 899999854 22 444444588888877 78999999999985321100 0111111 2222221
Q ss_pred ccCcEEEeCcc--cCCCchHHHHHHHHHHc
Q 010548 149 EIETCVECSAT--TMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 149 ~~~~~~~~SA~--~g~gi~~l~~~i~~~i~ 176 (507)
...++|.+|+. .+.|+..+.+.+...+.
T Consensus 155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~ 184 (197)
T cd04104 155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLP 184 (197)
T ss_pred CCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence 22378999998 67999999999988764
No 248
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.58 E-value=9e-15 Score=134.13 Aligned_cols=83 Identities=20% Similarity=0.310 Sum_probs=74.6
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+||+++|++|||||||+++|+++.|...+.||.+..+ .+.+.+++...++.+|||+|+++|..++ ..++++||++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~--~~~~~~ad~~ 80 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVR--PLSYPDSDAV 80 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhh--hhhcCCCCEE
Confidence 458999999999999999999999999999999988666 4567777788899999999999999887 6899999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 81 ilvyDi 86 (182)
T cd04172 81 LICFDI 86 (182)
T ss_pred EEEEEC
Confidence 999996
No 249
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.57 E-value=3.3e-14 Score=151.98 Aligned_cols=156 Identities=22% Similarity=0.254 Sum_probs=100.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC----CCCeeeCCccc----CCc-----e-----EEEEEeCCCCccc
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV----HAPTRLPPDFY----PDR-----V-----PVTIIDTSSSLEN 72 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~----~~~~t~~~~~~----~~~-----~-----~~~i~Dt~G~~~~ 72 (507)
+...|+++|++|+|||||+++|.+.......+.. ...+..+.... ... . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 3457999999999999999999876543322211 11111111100 000 1 2789999999999
Q ss_pred hhhhHHhhccCCEEEEEEeCCC---hhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc--c-c-----------
Q 010548 73 KGKLNEELKRADAVVLTYACNQ---QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--T-S----------- 135 (507)
Q Consensus 73 ~~~~~~~~~~ad~il~V~D~~~---~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~--~-~----------- 135 (507)
..++...++.+|++++|+|+++ +.+++.+ ..++.. ++|+++++||+|+...... . .
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~~--~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKRR--KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHHc--CCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 8888888899999999999998 4444443 334444 7999999999998521000 0 0
Q ss_pred hhh----hhHH---HHH-------------HhcccCcEEEeCcccCCCchHHHHHHHH
Q 010548 136 LEE----VMGP---IMQ-------------QFREIETCVECSATTMIQVPDVFYYAQK 173 (507)
Q Consensus 136 ~~~----~~~~---~~~-------------~~~~~~~~~~~SA~~g~gi~~l~~~i~~ 173 (507)
... .... ... .++...+++++||++|.|++++++.+..
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 000 0000 111 1122237899999999999999988754
No 250
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.57 E-value=5.6e-15 Score=139.78 Aligned_cols=149 Identities=16% Similarity=0.090 Sum_probs=93.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------------CC--CCCCCee---eCCcccCCceEEE
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEK--------------------------VP--PVHAPTR---LPPDFYPDRVPVT 62 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~--------------------------~~--~~~~~~t---~~~~~~~~~~~~~ 62 (507)
+|+++|++++|||||+.+|+...-... .. ....++| ....+...+.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999974321100 00 0011122 1123345788999
Q ss_pred EEeCCCCccchhhhHHhhccCCEEEEEEeCCChh-------hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC--Cc
Q 010548 63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-------TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH--NA 133 (507)
Q Consensus 63 i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~-------s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~--~~ 133 (507)
+|||||+..+.......++.+|++|+|+|++++. ..+. .. ........ ..+|+++|+||+|+.... ..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~-~~-~~~~~~~~-~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQT-RE-HALLARTL-GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccch-HH-HHHHHHHc-CCCeEEEEEEccccccccccHH
Confidence 9999998777766667788999999999999852 1111 11 22233333 137899999999997421 11
Q ss_pred --cchhhhhHHHHHHhcc---cCcEEEeCcccCCCch
Q 010548 134 --TSLEEVMGPIMQQFRE---IETCVECSATTMIQVP 165 (507)
Q Consensus 134 --~~~~~~~~~~~~~~~~---~~~~~~~SA~~g~gi~ 165 (507)
......+..+...++. ..++++|||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 0111222223333332 1369999999999988
No 251
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.57 E-value=3.6e-14 Score=131.30 Aligned_cols=93 Identities=17% Similarity=0.114 Sum_probs=61.9
Q ss_pred chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHH-----HH
Q 010548 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-----QQ 146 (507)
Q Consensus 72 ~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-----~~ 146 (507)
+..++..+++++|++++|+|+++.... |...+.....++|+++|+||+|+...... ......+. ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~ 94 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLPKDKN---LVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCCCCCC---HHHHHHHHHHHHHhh
Confidence 466778899999999999999876421 22222222347899999999999753222 11122222 11
Q ss_pred hcc-cCcEEEeCcccCCCchHHHHHHHH
Q 010548 147 FRE-IETCVECSATTMIQVPDVFYYAQK 173 (507)
Q Consensus 147 ~~~-~~~~~~~SA~~g~gi~~l~~~i~~ 173 (507)
.+. ...++++||++|.|++++++.|.+
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~ 122 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKK 122 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 111 125899999999999999988754
No 252
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.57 E-value=1.4e-14 Score=124.72 Aligned_cols=136 Identities=21% Similarity=0.256 Sum_probs=91.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCcc----chhhhHHhhccCCEEEEE
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----NKGKLNEELKRADAVVLT 89 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~----~~~~~~~~~~~ad~il~V 89 (507)
||++||+.|+|||||+++|.+... .+.. |....+ .=.++||||--- +...+.....+||+|++|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~K-----Tq~i~~-----~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll 70 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKK-----TQAIEY-----YDNTIDTPGEYIENPRFYHALIVTAQDADVVLLL 70 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCc-----cceeEe-----cccEEECChhheeCHHHHHHHHHHHhhCCEEEEE
Confidence 799999999999999999998662 2211 111111 124599999321 111222445799999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
.|++++.+.-. +.+.+.. ++|+|=|+||+|+...... .+....+.+.-|. ..+|++|+.+|+||++|.+
T Consensus 71 ~dat~~~~~~p------P~fa~~f-~~pvIGVITK~Dl~~~~~~---i~~a~~~L~~aG~-~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 71 QDATEPRSVFP------PGFASMF-NKPVIGVITKIDLPSDDAN---IERAKKWLKNAGV-KEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred ecCCCCCccCC------chhhccc-CCCEEEEEECccCccchhh---HHHHHHHHHHcCC-CCeEEEECCCCcCHHHHHH
Confidence 99998754322 2222222 6899999999999843221 2334445555554 3679999999999999999
Q ss_pred HHH
Q 010548 170 YAQ 172 (507)
Q Consensus 170 ~i~ 172 (507)
+|.
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 874
No 253
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.57 E-value=1.2e-14 Score=131.97 Aligned_cols=85 Identities=42% Similarity=0.698 Sum_probs=76.7
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCC-CCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
++++||+++|++|||||||+++|+++.+. ..|.+|.+.++..+.+.+++....+.+||++|++++..++ ..++++||
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~--~~~~~~~d 79 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLN--DAELAACD 79 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccc--hhhhhcCC
Confidence 57899999999999999999999999998 8888999988887888888777788999999999988776 67889999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 80 ~~llv~d~ 87 (169)
T cd01892 80 VACLVYDS 87 (169)
T ss_pred EEEEEEeC
Confidence 99999995
No 254
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.57 E-value=1.3e-14 Score=133.80 Aligned_cols=85 Identities=20% Similarity=0.302 Sum_probs=77.1
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
.+.+||+++|++|||||||+++|.++++...+.++.+.++....+..++...++.+|||+|+++|..++ ..++++||+
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~--~~~~~~ad~ 81 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIF--RSYSRGAQG 81 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHhcCCCE
Confidence 356999999999999999999999999988888888888877778888778899999999999999988 689999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 82 illVfD~ 88 (189)
T cd04121 82 IILVYDI 88 (189)
T ss_pred EEEEEEC
Confidence 9999995
No 255
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.57 E-value=1.2e-14 Score=133.57 Aligned_cols=82 Identities=20% Similarity=0.331 Sum_probs=75.6
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|+++++...+.+|.+.++..+.+..++...++.+|||+|+++|..++ ..++++||++++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~--~~~~~~a~~iil 78 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINML--PLVCNDAVAILF 78 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhh--HHHCcCCCEEEE
Confidence 589999999999999999999999998899999988877788888778899999999999999887 679999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~D~ 82 (182)
T cd04128 79 MFDL 82 (182)
T ss_pred EEEC
Confidence 9995
No 256
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.57 E-value=3e-14 Score=134.94 Aligned_cols=151 Identities=20% Similarity=0.263 Sum_probs=109.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc---cCC-ceEEEEEeCCCCccchhhh-------HHhhc
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF---YPD-RVPVTIIDTSSSLENKGKL-------NEELK 81 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~---~~~-~~~~~i~Dt~G~~~~~~~~-------~~~~~ 81 (507)
..|.+||-||+|||||+|+|...+ +.+. ..+-+|+...+ ..+ ...+.+-|.||..+...+. -..++
T Consensus 197 advGLVG~PNAGKSTLL~als~AK--pkVa-~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAK--PKVA-HYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccC--Cccc-ccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH
Confidence 458899999999999999999877 3222 22223322222 122 3349999999987544433 26789
Q ss_pred cCCEEEEEEeCCCh---hhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEE
Q 010548 82 RADAVVLTYACNQQ---STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE 155 (507)
Q Consensus 82 ~ad~il~V~D~~~~---~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (507)
.|+..+||+|++.+ ..++.+.. +..+++.+. .+.|.++|+||+|+++. ....+..++..+... .+++
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~ea-----e~~~l~~L~~~lq~~-~V~p 346 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEA-----EKNLLSSLAKRLQNP-HVVP 346 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhH-----HHHHHHHHHHHcCCC-cEEE
Confidence 99999999999998 77777775 666666543 47999999999998642 222346677777653 4899
Q ss_pred eCcccCCCchHHHHHHHH
Q 010548 156 CSATTMIQVPDVFYYAQK 173 (507)
Q Consensus 156 ~SA~~g~gi~~l~~~i~~ 173 (507)
+||++++|+.++.+.|.+
T Consensus 347 vsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 347 VSAKSGEGLEELLNGLRE 364 (366)
T ss_pred eeeccccchHHHHHHHhh
Confidence 999999999999988754
No 257
>PRK12736 elongation factor Tu; Reviewed
Probab=99.56 E-value=4.2e-14 Score=145.28 Aligned_cols=164 Identities=14% Similarity=0.177 Sum_probs=108.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCC---C----------CCCCCCCeee---CCcccCCceEEEEEeCCCCccc
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPE---K----------VPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLEN 72 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~---~----------~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~ 72 (507)
..+.++|+++|+.++|||||+++|++..... . ......+.|+ ...+..++..+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 4567999999999999999999998632100 0 0001122231 1233345678999999998888
Q ss_pred hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCcc-chhhhhHHHHHHhcc-
Q 010548 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFRE- 149 (507)
Q Consensus 73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~- 149 (507)
.......+..+|++++|+|++.+....... ++..+... ++| +|+|+||+|+.+..... ...+++..+...++.
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~~--~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTRE--HILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHH--HHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 776677778999999999998764333322 45556655 678 67899999987432220 112234444444442
Q ss_pred --cCcEEEeCcccCC--------CchHHHHHHHHHHc
Q 010548 150 --IETCVECSATTMI--------QVPDVFYYAQKAVL 176 (507)
Q Consensus 150 --~~~~~~~SA~~g~--------gi~~l~~~i~~~i~ 176 (507)
..+++++||++|. ++.++++.+.+.+.
T Consensus 165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 1379999999983 56777777776554
No 258
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.56 E-value=1.5e-14 Score=132.30 Aligned_cols=81 Identities=19% Similarity=0.304 Sum_probs=73.0
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|+++.|...+.||.+..+. +.+.+++...++.+|||+|+++|..+. +.++++||++++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~--~~~~~~a~~~il 78 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVR--PLCYPDSDAVLI 78 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcc--hhhcCCCCEEEE
Confidence 69999999999999999999999999889898876664 567777788899999999999999887 679999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 vfdi 82 (178)
T cd04131 79 CFDI 82 (178)
T ss_pred EEEC
Confidence 9995
No 259
>PRK12289 GTPase RsgA; Reviewed
Probab=99.56 E-value=4.3e-14 Score=141.49 Aligned_cols=89 Identities=18% Similarity=0.139 Sum_probs=61.2
Q ss_pred hhhHHhhccCCEEEEEEeCCChh-hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCc
Q 010548 74 GKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIET 152 (507)
Q Consensus 74 ~~~~~~~~~ad~il~V~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (507)
.+.+.++.++|.+++|+|+.++. +...+.. |+..+... ++|+++|+||+||...... .........++. .
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR-~L~~a~~~--~ip~ILVlNK~DLv~~~~~----~~~~~~~~~~g~--~ 151 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSR-FLVKAEST--GLEIVLCLNKADLVSPTEQ----QQWQDRLQQWGY--Q 151 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHH-HHHHHHHC--CCCEEEEEEchhcCChHHH----HHHHHHHHhcCC--e
Confidence 34456789999999999998775 4444454 66655444 7999999999999643111 111122223342 6
Q ss_pred EEEeCcccCCCchHHHHHH
Q 010548 153 CVECSATTMIQVPDVFYYA 171 (507)
Q Consensus 153 ~~~~SA~~g~gi~~l~~~i 171 (507)
++.+||+++.|++++++.+
T Consensus 152 v~~iSA~tg~GI~eL~~~L 170 (352)
T PRK12289 152 PLFISVETGIGLEALLEQL 170 (352)
T ss_pred EEEEEcCCCCCHHHHhhhh
Confidence 8999999999998877654
No 260
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.56 E-value=1.4e-14 Score=131.98 Aligned_cols=81 Identities=17% Similarity=0.374 Sum_probs=72.9
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|+++||||||+.+|+++.|...+.+|.+..+ .+.+..++...++.||||+|+++|..++ ..++++||++++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~--~~~~~~a~~~il 78 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLR--PLSYRGADVFVL 78 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccc--hhhcCCCcEEEE
Confidence 6999999999999999999999999988999998666 4456677778899999999999999987 679999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 vyd~ 82 (176)
T cd04133 79 AFSL 82 (176)
T ss_pred EEEc
Confidence 9995
No 261
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.55 E-value=1.6e-14 Score=134.88 Aligned_cols=82 Identities=18% Similarity=0.358 Sum_probs=75.2
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC-CCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
+||+++|++|||||||+++|+++.+...+.+|.+.++..+.+..+ +....+.+|||+|++++..++ ..++++||+++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~a~~~i 78 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMT--RVYYRGAVGAI 78 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhH--HHHhCCCCEEE
Confidence 589999999999999999999999998899999988887777777 678899999999999999887 78999999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 79 lv~D~ 83 (201)
T cd04107 79 IVFDV 83 (201)
T ss_pred EEEEC
Confidence 99995
No 262
>PRK12735 elongation factor Tu; Reviewed
Probab=99.55 E-value=4.5e-14 Score=145.18 Aligned_cols=164 Identities=13% Similarity=0.161 Sum_probs=106.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCC---CC------CC----CCCCCeeeC---CcccCCceEEEEEeCCCCcc
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVP---EK------VP----PVHAPTRLP---PDFYPDRVPVTIIDTSSSLE 71 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~---~~------~~----~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~ 71 (507)
..++.++|+++|++++|||||+++|++.... .. .. ....+.|+. ..+..++..+.++||||+.+
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 3466799999999999999999999862100 00 00 011223311 22334567899999999987
Q ss_pred chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEE-EEEecccCCCCCCc-cchhhhhHHHHHHhcc
Q 010548 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII-VAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE 149 (507)
Q Consensus 72 ~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~pii-lv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~ 149 (507)
|.......+..+|++++|+|+.++...+.. + ++..+... ++|.+ +++||+|+.+.... .....++..+...++.
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~-e-~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQTR-E-HILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhHH-H-HHHHHHHc--CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 777677778899999999999876433322 2 44555555 68865 57999999743221 0122244455555442
Q ss_pred ---cCcEEEeCcccCC----------CchHHHHHHHHHH
Q 010548 150 ---IETCVECSATTMI----------QVPDVFYYAQKAV 175 (507)
Q Consensus 150 ---~~~~~~~SA~~g~----------gi~~l~~~i~~~i 175 (507)
..+++++||++|. ++.+|++.|...+
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 1378999999995 4566666665543
No 263
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.55 E-value=2e-14 Score=129.87 Aligned_cols=83 Identities=23% Similarity=0.465 Sum_probs=75.2
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+||+++|++|||||||+++|+++++...+.++.+.++..+.+...+...++.+|||+|++++..++ ..+++++|+++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~i 79 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVT--RSYYRGAAGAL 79 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhcCCCEEE
Confidence 4899999999999999999999999988888888888877777777777889999999999999887 68999999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 80 lv~d~ 84 (166)
T cd04122 80 MVYDI 84 (166)
T ss_pred EEEEC
Confidence 99995
No 264
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.55 E-value=2e-14 Score=130.08 Aligned_cols=84 Identities=27% Similarity=0.431 Sum_probs=76.4
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||+++|.+.++...+.++.+.++..+.+..++...++.+|||+|++++..+. ..++++||++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--~~~~~~ad~~ 79 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTIT--TAYYRGAMGI 79 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHH--HHHhCCCCEE
Confidence 45899999999999999999999999999999999988877788888777899999999999998877 6889999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 80 i~v~d~ 85 (167)
T cd01867 80 ILVYDI 85 (167)
T ss_pred EEEEEC
Confidence 999995
No 265
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.55 E-value=2e-14 Score=151.68 Aligned_cols=132 Identities=13% Similarity=0.097 Sum_probs=91.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-------------------CCeee---CCcccCCceEEEEEeCC
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-------------------APTRL---PPDFYPDRVPVTIIDTS 67 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-------------------~~~t~---~~~~~~~~~~~~i~Dt~ 67 (507)
.+..+|+|+|++++|||||+++|+...-.....+.. .+.++ ...+.++++.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 356799999999999999999997422111111000 01111 12244678899999999
Q ss_pred CCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh
Q 010548 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF 147 (507)
Q Consensus 68 G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 147 (507)
|+.++......+++.+|++|+|+|++++..... ..++...+.. ++|+++++||+|+.... ..+.+..+...+
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~~--~iPiiv~iNK~D~~~a~----~~~~l~~i~~~l 159 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRLR--DTPIFTFINKLDRDGRE----PLELLDEIEEVL 159 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHhc--CCCEEEEEECCcccccC----HHHHHHHHHHHh
Confidence 998888878889999999999999988643322 2355555555 79999999999987642 223445555656
Q ss_pred cc
Q 010548 148 RE 149 (507)
Q Consensus 148 ~~ 149 (507)
+.
T Consensus 160 ~~ 161 (526)
T PRK00741 160 GI 161 (526)
T ss_pred CC
Confidence 54
No 266
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.55 E-value=2e-14 Score=136.21 Aligned_cols=82 Identities=17% Similarity=0.290 Sum_probs=74.4
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+||++||++|||||||+++|+++.|...|.||.+..+. ..+.+++..+++.||||+|+++|..+. ..+|++||+++
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~--~~~~~~ad~vI 89 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVR--PLCYSDSDAVL 89 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHH--HHHcCCCcEEE
Confidence 589999999999999999999999999999999887764 456777788899999999999999887 68999999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 90 lVyDi 94 (232)
T cd04174 90 LCFDI 94 (232)
T ss_pred EEEEC
Confidence 99996
No 267
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.55 E-value=1.1e-13 Score=132.38 Aligned_cols=160 Identities=21% Similarity=0.239 Sum_probs=109.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCcc----chhhhH----Hhh
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----NKGKLN----EEL 80 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~----~~~~~~----~~~ 80 (507)
.....|+|.|.||||||||++++++.+...+ ||-+.-+.. -..+..+..+++++||||.-+ ..+.++ .++
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~-vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIH-VGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCcccccee-EeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 3467899999999999999999999884322 443222221 234445677999999999742 111111 233
Q ss_pred -ccCCEEEEEEeCCC--hhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548 81 -KRADAVVLTYACNQ--QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (507)
Q Consensus 81 -~~ad~il~V~D~~~--~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (507)
.-+++|+|+||++. +.+.+.... ++..++.... .|+++|.||+|....... +........-+. .....+|
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~f~-~p~v~V~nK~D~~~~e~~----~~~~~~~~~~~~-~~~~~~~ 317 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQIS-LLEEIKELFK-APIVVVINKIDIADEEKL----EEIEASVLEEGG-EEPLKIS 317 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHH-HHHHHHHhcC-CCeEEEEecccccchhHH----HHHHHHHHhhcc-cccccee
Confidence 34689999999975 467777665 7888887764 899999999998865333 222222222222 1467899
Q ss_pred cccCCCchHHHHHHHHHHcC
Q 010548 158 ATTMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 158 A~~g~gi~~l~~~i~~~i~~ 177 (507)
+..+.+++.+.+.+...+..
T Consensus 318 ~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 318 ATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred eeehhhHHHHHHHHHHHhhc
Confidence 99999999998888776543
No 268
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.54 E-value=2.4e-14 Score=129.98 Aligned_cols=81 Identities=22% Similarity=0.373 Sum_probs=74.7
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv 504 (507)
||+++|++|||||||+++|+++.|...|.+|.+..+..+.+...|...++.+|||+|+++|..++ ..+++++|++++|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~~ilv 79 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIA--STYYRGAQAIIIV 79 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhH--HHHhcCCCEEEEE
Confidence 79999999999999999999999999999999988877777788778899999999999999887 7899999999999
Q ss_pred EeC
Q 010548 505 YDR 507 (507)
Q Consensus 505 ~D~ 507 (507)
||+
T Consensus 80 ~d~ 82 (170)
T cd04108 80 FDL 82 (170)
T ss_pred EEC
Confidence 996
No 269
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.54 E-value=1.3e-13 Score=129.86 Aligned_cols=111 Identities=11% Similarity=0.156 Sum_probs=80.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--CCC-----------CCCCeee-----CCccc--------CCceEEEEEeCC
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEK--VPP-----------VHAPTRL-----PPDFY--------PDRVPVTIIDTS 67 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~-----------~~~~~t~-----~~~~~--------~~~~~~~i~Dt~ 67 (507)
+|+|+|+.++|||||+.+|+....... ... ...+.|+ ...+. ..++.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 699999999999999999986432111 000 0001111 11122 237889999999
Q ss_pred CCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCC
Q 010548 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128 (507)
Q Consensus 68 G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 128 (507)
|+.+|......+++.+|++++|+|++++.+.+... ++...... ++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~--~l~~~~~~--~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET--VLRQALKE--RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEECCCcc
Confidence 99999999999999999999999999987666533 44444444 68999999999986
No 270
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.54 E-value=2.3e-14 Score=132.75 Aligned_cols=82 Identities=18% Similarity=0.372 Sum_probs=73.2
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+||+++|++|||||||+++|+.+.|...+.||.+..+. +.+.++++.+.+.+|||+|+++|..++ ..++++||+++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~--~~~~~~a~~~i 79 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLR--TLSYPQTNVFI 79 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhh--hhhccCCCEEE
Confidence 489999999999999999999999999899999886554 445667778899999999999999988 68999999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 80 lvydi 84 (191)
T cd01875 80 ICFSI 84 (191)
T ss_pred EEEEC
Confidence 99996
No 271
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.54 E-value=3e-14 Score=128.60 Aligned_cols=82 Identities=22% Similarity=0.368 Sum_probs=74.5
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|+++++...+.++.+.++....+..+++...+.+|||+|++++..++ ..+++++|++++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~--~~~~~~~~~~l~ 79 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT--TAYYRGAMGFIL 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHccCCcEEEE
Confidence 799999999999999999999999988888998888877777777667889999999999999887 688999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 80 v~d~ 83 (165)
T cd01865 80 MYDI 83 (165)
T ss_pred EEEC
Confidence 9995
No 272
>CHL00071 tufA elongation factor Tu
Probab=99.53 E-value=1e-13 Score=143.18 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=101.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-------------CCCCCCCeeeC---CcccCCceEEEEEeCCCCccc
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-------------VPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLEN 72 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-------------~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~ 72 (507)
..+.++|+++|++++|||||+++|++...... ......++|+. ..+..++..+.++||||+..+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 45679999999999999999999997421100 00011333322 223356778999999998887
Q ss_pred hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCc-cchhhhhHHHHHHhcc-
Q 010548 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE- 149 (507)
Q Consensus 73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~- 149 (507)
.......+..+|++++|+|+..+...+... .+..+... ++| +|+++||+|+.+.... ......+..+....+.
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~~--~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQTKE--HILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 777778889999999999998764433322 55556655 678 7789999999753221 0122234444444432
Q ss_pred --cCcEEEeCcccCCCc
Q 010548 150 --IETCVECSATTMIQV 164 (507)
Q Consensus 150 --~~~~~~~SA~~g~gi 164 (507)
..+++++||.+|.|+
T Consensus 165 ~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 165 GDDIPIVSGSALLALEA 181 (409)
T ss_pred CCcceEEEcchhhcccc
Confidence 137999999999754
No 273
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.53 E-value=6.3e-16 Score=134.70 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=127.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCccc-----C---CceEEEEEeCCCCccchhhhHHhhccC
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY-----P---DRVPVTIIDTSSSLENKGKLNEELKRA 83 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~-----~---~~~~~~i~Dt~G~~~~~~~~~~~~~~a 83 (507)
-+|+.|+|..+|||||++.+++...|...+.. |+..++. + .-+++.+||..|++++..+..-+++++
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRA-----tIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea 99 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRA-----TIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEA 99 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHH-----HHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCC
Confidence 58999999999999999999998887655544 2222221 2 246789999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHhHHHHHHhc-----CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548 84 DAVVLTYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (507)
Q Consensus 84 d~il~V~D~~~~~s~~~~~~~~~~~l~~~-----~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (507)
++..+|||+++..+|+.... |...+... +...|+++..||||....... .....+..+.++.+. ..++++|+
T Consensus 100 ~~~~iVfdvt~s~tfe~~sk-wkqdldsk~qLpng~Pv~~vllankCd~e~~a~~-~~~~~~d~f~kengf-~gwtets~ 176 (229)
T KOG4423|consen 100 HGAFIVFDVTRSLTFEPVSK-WKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN-EATRQFDNFKKENGF-EGWTETSA 176 (229)
T ss_pred cceEEEEEccccccccHHHH-HHHhccCcccCCCCCcchheeccchhccChHhhh-hhHHHHHHHHhccCc-cceeeecc
Confidence 99999999999999999886 98887543 234789999999998765433 233556666666664 37899999
Q ss_pred ccCCCchHHHHHHHHHHcCCC
Q 010548 159 TTMIQVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 159 ~~g~gi~~l~~~i~~~i~~~~ 179 (507)
|.+.++.|..+.+++.++-..
T Consensus 177 Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 177 KENKNIPEAQRELVEKILVND 197 (229)
T ss_pred ccccChhHHHHHHHHHHHhhc
Confidence 999999999999998876444
No 274
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.53 E-value=4.3e-14 Score=127.63 Aligned_cols=83 Identities=28% Similarity=0.476 Sum_probs=75.2
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+||+++|++|||||||+++++++++...+.++.+.++..+.+...+...++.+|||+|++++..++ ..+++.+|+++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~ii 79 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT--SSYYRGAHGII 79 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHH--HHHhCcCCEEE
Confidence 4899999999999999999999999988888888888887878777777889999999999998887 67899999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 80 ~v~d~ 84 (166)
T cd01869 80 IVYDV 84 (166)
T ss_pred EEEEC
Confidence 99995
No 275
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.53 E-value=8e-14 Score=143.44 Aligned_cols=150 Identities=15% Similarity=0.165 Sum_probs=97.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC------CC-C------CCCCCCCeee---CCcccCCceEEEEEeCCCCccc
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESV------PE-K------VPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLEN 72 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~------~~-~------~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~ 72 (507)
..+.++|+++|+.++|||||+++|++... .. . ......+.|+ ...+..++..+.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 46679999999999999999999984310 00 0 0001122231 1233355678999999999888
Q ss_pred hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEE-EEEecccCCCCCCc-cchhhhhHHHHHHhcc-
Q 010548 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII-VAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE- 149 (507)
Q Consensus 73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~pii-lv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~- 149 (507)
.......+..+|++++|+|++.+...+... .+..+... ++|.+ +|+||+|+.+.... ....+++..+...++.
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e--~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~ 164 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTRE--HILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 766666778899999999998854333322 44445555 67755 68999998753221 0112344555555542
Q ss_pred --cCcEEEeCcccCC
Q 010548 150 --IETCVECSATTMI 162 (507)
Q Consensus 150 --~~~~~~~SA~~g~ 162 (507)
..+++++||++|.
T Consensus 165 ~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 165 GDDTPIIRGSALKAL 179 (394)
T ss_pred ccCccEEECcccccc
Confidence 1479999999885
No 276
>COG2262 HflX GTPases [General function prediction only]
Probab=99.53 E-value=1.8e-13 Score=134.92 Aligned_cols=155 Identities=21% Similarity=0.156 Sum_probs=111.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceEEEEEeCCCCccchh--hhH------Hhh
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--KLN------EEL 80 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~------~~~ 80 (507)
.-..|+++|-.|+|||||+|+|++...... ...+..++|....+.. +..+.+.||.|....-. +.. ...
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 456899999999999999999997664322 4445555555444433 67899999999754322 111 346
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 81 ~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
..||+++.|+|++++...+.+.. ..+.+...+ .++|+|+|.||+|+..+... ...+....+ ..+.+||+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~~------~~~~~~~~~---~~v~iSA~ 339 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEEI------LAELERGSP---NPVFISAK 339 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchhh------hhhhhhcCC---CeEEEEec
Confidence 78999999999999977776665 566666653 36999999999997654221 112222221 47999999
Q ss_pred cCCCchHHHHHHHHHHc
Q 010548 160 TMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i~ 176 (507)
+|.|++.|.+.|...+.
T Consensus 340 ~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 340 TGEGLDLLRERIIELLS 356 (411)
T ss_pred cCcCHHHHHHHHHHHhh
Confidence 99999999999988774
No 277
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.52 E-value=4.6e-14 Score=131.21 Aligned_cols=82 Identities=20% Similarity=0.104 Sum_probs=73.3
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC-----CCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-----GGNKKTLILQEIPEEGVKKILSNKEALASC 498 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a 498 (507)
+||+++|+++||||||+++|+++.+...+.+|.+.++..+.+.++ +....+.||||+|+++|..++ ..+|+++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~--~~~yr~a 78 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTR--AVFYNQV 78 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHH--HHHhCcC
Confidence 589999999999999999999999998888999887777776664 356789999999999999887 7899999
Q ss_pred cEEEEEEeC
Q 010548 499 DVTIFVYDR 507 (507)
Q Consensus 499 d~vilv~D~ 507 (507)
|++|+|||+
T Consensus 79 d~iIlVyDv 87 (202)
T cd04102 79 NGIILVHDL 87 (202)
T ss_pred CEEEEEEEC
Confidence 999999995
No 278
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.52 E-value=5e-14 Score=126.98 Aligned_cols=82 Identities=21% Similarity=0.361 Sum_probs=75.0
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|+++++...+.++.+.++..+.+...+....+.+|||+|++++..++ ..+++++|++++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~il 78 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVR--NEFYKDTQGVLL 78 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHH--HHHhccCCEEEE
Confidence 589999999999999999999999998888999988877778888788899999999999998877 688999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~D~ 82 (168)
T cd04119 79 VYDV 82 (168)
T ss_pred EEEC
Confidence 9995
No 279
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.52 E-value=6.4e-14 Score=127.04 Aligned_cols=84 Identities=17% Similarity=0.329 Sum_probs=75.9
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+||+++|++|||||||+++|+++.+...+.++.+.++..+.+..+++..++.+|||+|++++..++ ..+++.+|++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~~d~~ 81 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLR--TPFYRGSDCC 81 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhH--HHHhcCCCEE
Confidence 46899999999999999999999999988888888887777777888788899999999999999887 6799999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 82 i~v~d~ 87 (170)
T cd04116 82 LLTFAV 87 (170)
T ss_pred EEEEEC
Confidence 999985
No 280
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.52 E-value=1.1e-13 Score=146.03 Aligned_cols=117 Identities=12% Similarity=0.084 Sum_probs=82.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-------------------CCeee---CCcccCCceEEEEEeCC
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-------------------APTRL---PPDFYPDRVPVTIIDTS 67 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-------------------~~~t~---~~~~~~~~~~~~i~Dt~ 67 (507)
.+..+|+|+|++++|||||+++|+...-.....+.. .+.++ ...+.++++.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 456799999999999999999996422111111000 01111 12344678999999999
Q ss_pred CCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (507)
Q Consensus 68 G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 130 (507)
|+..+......+++.+|++|+|+|++++.. .....++...+.. ++|+++++||+|+...
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~--~~t~~l~~~~~~~--~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE--TRTRKLMEVTRLR--DTPIFTFMNKLDRDIR 147 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC--HHHHHHHHHHHhc--CCCEEEEEECccccCC
Confidence 998888777889999999999999987632 2222355555554 7999999999998653
No 281
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.52 E-value=6.1e-14 Score=126.47 Aligned_cols=84 Identities=25% Similarity=0.388 Sum_probs=76.0
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+||+++|++|||||||+++++++++...+.++.+.++....+..++...++.+|||+|++++..+. ..++++|+++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~ 79 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAIT--SAYYRGAVGA 79 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHH--HHHHCCCCEE
Confidence 35899999999999999999999999998888999988888888888667789999999999999887 6789999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 80 i~v~d~ 85 (165)
T cd01868 80 LLVYDI 85 (165)
T ss_pred EEEEEC
Confidence 999995
No 282
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.52 E-value=1.4e-13 Score=120.85 Aligned_cols=54 Identities=17% Similarity=0.086 Sum_probs=42.6
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCc
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 482 (507)
+++++|.+|||||||+|++++.++...+..++.++. ...+.+.+ .+.+|||+|.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKH-FQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccc-eEEEEeCC---CEEEEECCCc
Confidence 789999999999999999999988766666665554 44555542 4688999995
No 283
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.52 E-value=4.4e-14 Score=126.95 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=70.9
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|+++.+...+.+|.+. ...+.+..++....+.+|||+|+++|..++ ..+++++|++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~il 78 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVDGQQCMLEILDTAGTEQFTAMR--DLYIKNGQGFVL 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCccccchHH--HHHhhcCCEEEE
Confidence 79999999999999999999999998888887763 345566777677788999999999999888 678999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~d~ 82 (163)
T cd04136 79 VYSI 82 (163)
T ss_pred EEEC
Confidence 9995
No 284
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.51 E-value=5.6e-14 Score=128.24 Aligned_cols=81 Identities=23% Similarity=0.413 Sum_probs=71.4
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|++++|...+.||.+..+.. .+..++...++.+|||+|+++|..++ ..+++.+|++++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~a~~~il 78 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLR--PLSYPQTDVFLV 78 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEECCCccchhhhh--hhhcccCCEEEE
Confidence 799999999999999999999999988888988866643 45666677889999999999998877 679999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~d~ 82 (175)
T cd01874 79 CFSV 82 (175)
T ss_pred EEEC
Confidence 9995
No 285
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.51 E-value=6.7e-14 Score=125.88 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=71.7
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|.+|||||||+++|+++++...+.++.+.......+..++....+.+|||+|+++|..++ ..+++++|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~i~ 78 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMH--ASYYHKAHACIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhh--HHHhCCCCEEEE
Confidence 589999999999999999999999988777776666655566667677789999999999999888 689999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~d~ 82 (161)
T cd04124 79 VFDV 82 (161)
T ss_pred EEEC
Confidence 9995
No 286
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.51 E-value=7.4e-14 Score=130.21 Aligned_cols=84 Identities=29% Similarity=0.462 Sum_probs=76.3
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||+++|++..+...+.+|.+.++....+.+++....+.+|||+|++++..++ ..++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--~~~~~~a~~i 82 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTIT--STYYRGTHGV 82 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHH--HHHhCCCcEE
Confidence 46999999999999999999999999988888999888887888887777789999999999999887 6899999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 83 ilv~D~ 88 (199)
T cd04110 83 IVVYDV 88 (199)
T ss_pred EEEEEC
Confidence 999996
No 287
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.51 E-value=8.2e-14 Score=126.18 Aligned_cols=84 Identities=23% Similarity=0.399 Sum_probs=75.6
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||++++++.++...+.++.+.++....+...++...+.+|||+|++++..+. ..+++.+|++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~i 80 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSIT--RSYYRGAAGA 80 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhccCCEE
Confidence 45899999999999999999999999988888888888877777777777789999999999998877 6889999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 81 l~v~d~ 86 (168)
T cd01866 81 LLVYDI 86 (168)
T ss_pred EEEEEC
Confidence 999995
No 288
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.51 E-value=8.2e-14 Score=131.79 Aligned_cols=85 Identities=16% Similarity=0.257 Sum_probs=76.3
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||+++|++|||||||+++|+.+++...+.+|.+..+....+..+++..++.+|||+|+++|..++ ..+++++|+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~ 88 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--DGYYIHGQC 88 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHcccccE
Confidence 456999999999999999999999999998899999887776667677677899999999999999887 678999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+|+|||+
T Consensus 89 ~ilvfD~ 95 (219)
T PLN03071 89 AIIMFDV 95 (219)
T ss_pred EEEEEeC
Confidence 9999995
No 289
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.51 E-value=6.9e-14 Score=131.90 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=73.2
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||++||++|||||||+++|+++.|...|.||.+..+. ..+.+++....+.+|||+|++.|..++ +.+|+++|++++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~--~~~~~~~d~ill 78 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVR--PLAYPDSDAVLI 78 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHh--HHhccCCCEEEE
Confidence 69999999999999999999999999999999887665 456677778899999999999999887 689999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 vfdi 82 (222)
T cd04173 79 CFDI 82 (222)
T ss_pred EEEC
Confidence 9996
No 290
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.51 E-value=9.5e-14 Score=127.13 Aligned_cols=84 Identities=14% Similarity=0.300 Sum_probs=73.5
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC----------CCeEEEEEEecCCchhhhhhccc
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP----------GGNKKTLILQEIPEEGVKKILSN 491 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~----------~~~~~~~i~Dt~G~~~~~~~~~~ 491 (507)
+.+||+++|++|||||||+++|.++.+...+.+|.+.++..+.+... +...++.+|||+|++++..++
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-- 80 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT-- 80 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH--
Confidence 56899999999999999999999999999888998877766655543 356789999999999999887
Q ss_pred hhhcccccEEEEEEeC
Q 010548 492 KEALASCDVTIFVYDR 507 (507)
Q Consensus 492 ~~~~~~ad~vilv~D~ 507 (507)
..+++++|++++|||+
T Consensus 81 ~~~~~~~~~~i~v~d~ 96 (180)
T cd04127 81 TAFFRDAMGFLLIFDL 96 (180)
T ss_pred HHHhCCCCEEEEEEEC
Confidence 6899999999999995
No 291
>PLN00023 GTP-binding protein; Provisional
Probab=99.50 E-value=8.7e-14 Score=135.72 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=76.5
Q ss_pred ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCC-------------CeEEEEEEecCCchhh
Q 010548 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-------------GNKKTLILQEIPEEGV 485 (507)
Q Consensus 419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~~~i~Dt~G~~~~ 485 (507)
.....+||+++|+.|||||||+++|+++.+...+.+|++..+.++.+.+.+ ..+.+.||||+|+++|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 344569999999999999999999999999988899999888777776542 3567899999999999
Q ss_pred hhhccchhhcccccEEEEEEeC
Q 010548 486 KKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 486 ~~~~~~~~~~~~ad~vilv~D~ 507 (507)
..++ ..+|++++++|+|||+
T Consensus 97 rsL~--~~yyr~AdgiILVyDI 116 (334)
T PLN00023 97 KDCR--SLFYSQINGVIFVHDL 116 (334)
T ss_pred hhhh--HHhccCCCEEEEEEeC
Confidence 9988 7899999999999996
No 292
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.50 E-value=7.4e-13 Score=131.08 Aligned_cols=80 Identities=28% Similarity=0.346 Sum_probs=53.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCC--CCee---eCC-----------------ccc-CCceEEEEEeCCCC-
Q 010548 15 VVVVGDRGTGKSSLIAAAATESVPEK-VPPVH--APTR---LPP-----------------DFY-PDRVPVTIIDTSSS- 69 (507)
Q Consensus 15 V~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~--~~~t---~~~-----------------~~~-~~~~~~~i~Dt~G~- 69 (507)
|+++|.||||||||+|+|++.....+ ++... +..- ... ..+ ...+.+++|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 58999999999999999998774221 22211 1110 000 011 13478999999998
Q ss_pred ---ccchhhhH---HhhccCCEEEEEEeCCC
Q 010548 70 ---LENKGKLN---EELKRADAVVLTYACNQ 94 (507)
Q Consensus 70 ---~~~~~~~~---~~~~~ad~il~V~D~~~ 94 (507)
.++..+.. ..++.||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 33444433 35899999999999973
No 293
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.50 E-value=8e-14 Score=131.64 Aligned_cols=82 Identities=23% Similarity=0.368 Sum_probs=74.3
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCC-CeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-GNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
+||+++|++|||||||+++|+++.+...+.+|.+.++..+.+.+++ ...++.+|||+|++.+..++ ..++++||+++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~--~~~~~~ad~ii 78 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKML--DKYIYGAHAVF 78 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHH--HHHhhcCCEEE
Confidence 5899999999999999999999999999999999888887787764 46789999999999999887 67899999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 79 lV~D~ 83 (215)
T cd04109 79 LVYDV 83 (215)
T ss_pred EEEEC
Confidence 99995
No 294
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.50 E-value=1.1e-13 Score=124.97 Aligned_cols=84 Identities=25% Similarity=0.423 Sum_probs=75.1
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||++++.++.+...+.++.+.++..+.+..++....+.+|||+|++++.... ..+++.+|++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~~d~~ 79 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTIT--QSYYRSANGA 79 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHhccCCEE
Confidence 45899999999999999999999999988888888888877888887666789999999999998877 6789999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 80 llv~d~ 85 (165)
T cd01864 80 IIAYDI 85 (165)
T ss_pred EEEEEC
Confidence 999995
No 295
>PLN03110 Rab GTPase; Provisional
Probab=99.50 E-value=1.1e-13 Score=130.81 Aligned_cols=85 Identities=24% Similarity=0.372 Sum_probs=77.8
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
.+.+||+++|++|||||||+++|++..+...+.+|.+.++..+.+...+...++.+|||+|++++.+++ ..+++.+++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~~~ 87 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAIT--SAYYRGAVG 87 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhCCCCE
Confidence 457999999999999999999999999988888999988888888888777899999999999999887 689999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 88 ~ilv~d~ 94 (216)
T PLN03110 88 ALLVYDI 94 (216)
T ss_pred EEEEEEC
Confidence 9999995
No 296
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.50 E-value=9.3e-14 Score=124.96 Aligned_cols=82 Identities=26% Similarity=0.416 Sum_probs=74.0
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|+++++...+.++.+.++..+.+..++...++.+|||+|++++..+. ..+++.+|++++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--~~~~~~~~~~i~ 78 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTIT--KQYYRRAQGIFL 78 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhH--HHHhcCCcEEEE
Confidence 589999999999999999999999988888888888777778887667889999999999999887 678999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~d~ 82 (161)
T cd04117 79 VYDI 82 (161)
T ss_pred EEEC
Confidence 9995
No 297
>PRK12288 GTPase RsgA; Reviewed
Probab=99.50 E-value=3.5e-13 Score=135.00 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=61.5
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
..++|.+++|+++....++..+.. |+..+... ++|+++|+||+|+...... .............+ .+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr-~L~~a~~~--~i~~VIVlNK~DL~~~~~~-~~~~~~~~~y~~~g--~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDR-YLVACETL--GIEPLIVLNKIDLLDDEGR-AFVNEQLDIYRNIG--YRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHH-HHHHHHhc--CCCEEEEEECccCCCcHHH-HHHHHHHHHHHhCC--CeEEEEeCC
Confidence 356899999999988888988876 77666554 7999999999999754211 01111112222333 278999999
Q ss_pred cCCCchHHHHHH
Q 010548 160 TMIQVPDVFYYA 171 (507)
Q Consensus 160 ~g~gi~~l~~~i 171 (507)
++.|++++++.|
T Consensus 192 tg~GideL~~~L 203 (347)
T PRK12288 192 TGEGLEELEAAL 203 (347)
T ss_pred CCcCHHHHHHHH
Confidence 999999988765
No 298
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.50 E-value=1.1e-13 Score=130.30 Aligned_cols=83 Identities=25% Similarity=0.415 Sum_probs=74.4
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC-CCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
.+||+++|++|||||||+++|+++++...+.+|.+.++..+.+.+. +...++.+|||+|++++..+. ..+++++|++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~i 79 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSIT--RSYYRNSVGV 79 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHH--HHHhcCCcEE
Confidence 4899999999999999999999999999888999888887777664 456789999999999999877 6899999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 80 ilv~D~ 85 (211)
T cd04111 80 LLVFDI 85 (211)
T ss_pred EEEEEC
Confidence 999995
No 299
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.49 E-value=1.1e-13 Score=125.90 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=72.3
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+||+++|++|||||||+++|+++++...+.++.+..+ .+.+..++....+.+|||+|+++|..++ ..+++.+|+++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~--~~~~~~~d~~i 78 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMR--DQYMRCGEGFI 78 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHh--HHHhhcCCEEE
Confidence 37999999999999999999999999888888888655 3446677677889999999999999988 68999999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 79 lv~d~ 83 (172)
T cd04141 79 ICYSV 83 (172)
T ss_pred EEEEC
Confidence 99995
No 300
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.49 E-value=4.3e-13 Score=131.28 Aligned_cols=89 Identities=15% Similarity=0.045 Sum_probs=59.2
Q ss_pred hhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcE
Q 010548 74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC 153 (507)
Q Consensus 74 ~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (507)
..+...++.||++++|+|+..+.+..... +.+.+ .++|+|+|.||+|+.+... .......+ ...+ .++
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~~~--i~~~l----~~kp~IiVlNK~DL~~~~~---~~~~~~~~-~~~~--~~v 80 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRNPM--IDEIR----GNKPRLIVLNKADLADPAV---TKQWLKYF-EEKG--IKA 80 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCChh--HHHHH----CCCCEEEEEEccccCCHHH---HHHHHHHH-HHcC--CeE
Confidence 44567899999999999998875543321 33333 2689999999999854211 11111112 2222 257
Q ss_pred EEeCcccCCCchHHHHHHHHH
Q 010548 154 VECSATTMIQVPDVFYYAQKA 174 (507)
Q Consensus 154 ~~~SA~~g~gi~~l~~~i~~~ 174 (507)
+.+||+++.|++++.+.+.+.
T Consensus 81 i~iSa~~~~gi~~L~~~i~~~ 101 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKKL 101 (276)
T ss_pred EEEECCCcccHHHHHHHHHHH
Confidence 999999999999998877554
No 301
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.49 E-value=1e-13 Score=124.68 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=71.2
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++++.+.+...+.++.+ .+....+..++....+.+|||+|+++|..++ ..++++||++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~~i~ 78 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMR--DLYIKNGQGFIV 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchH--HHHHhhCCEEEE
Confidence 7999999999999999999999999888877776 3445667777777789999999999999888 689999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~d~ 82 (163)
T cd04176 79 VYSL 82 (163)
T ss_pred EEEC
Confidence 9995
No 302
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.49 E-value=2.3e-13 Score=127.18 Aligned_cols=166 Identities=19% Similarity=0.192 Sum_probs=113.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceEEEEEeCCCCcc-------chhhhHH
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE-------NKGKLNE 78 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~ 78 (507)
.....++|.++|..|||||||||+|..+...+. .....+..+ ..........+.+|||||.++ +......
T Consensus 35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~-~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITT-RLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred cccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchh-hHHhhccccceEEecCCCcccchhhhHHHHHHHHH
Confidence 345679999999999999999999997553222 111111112 111223346799999999875 4445667
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC--------Cc-----cchhhhhHHHHH
Q 010548 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH--------NA-----TSLEEVMGPIMQ 145 (507)
Q Consensus 79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~--------~~-----~~~~~~~~~~~~ 145 (507)
++.+.|+++.+.++.++.--. ..+++..+...+-+.|+++++|.+|..... .. ...++....+.+
T Consensus 114 ~l~~~DLvL~l~~~~draL~~--d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGT--DEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccccC--CHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 889999999999999884332 333555555555579999999999976541 00 011222333444
Q ss_pred HhcccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548 146 QFREIETCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 146 ~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
.+....|++..|...+.|++++...+++.+.
T Consensus 192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 192 LFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 4455558899999999999999999999875
No 303
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.49 E-value=1.2e-13 Score=123.63 Aligned_cols=81 Identities=21% Similarity=0.334 Sum_probs=70.9
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|+++++...+.++.+..+ .+.+.+++....+.+|||+|++++..++ ..+++++|++++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~--~~~~~~~~~~i~ 78 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR--DQYMRTGEGFLC 78 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHH--HHHHhcCCEEEE
Confidence 6999999999999999999999999888888877655 4556667667788899999999999888 689999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~~~ 82 (162)
T cd04138 79 VFAI 82 (162)
T ss_pred EEEC
Confidence 9985
No 304
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.48 E-value=1.4e-13 Score=123.55 Aligned_cols=82 Identities=18% Similarity=0.386 Sum_probs=73.3
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC--CCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP--GGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+||+++|++|||||||+++|+++.+...+.++.+.++..+.+... +...++.+|||+|++++..++ ..+++.+|++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~~ 78 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAIT--KAYYRGAQAC 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhH--HHHhcCCCEE
Confidence 589999999999999999999999988888888888766666666 677899999999999999887 6899999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 79 v~v~d~ 84 (162)
T cd04106 79 ILVFST 84 (162)
T ss_pred EEEEEC
Confidence 999995
No 305
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.48 E-value=2.2e-13 Score=115.40 Aligned_cols=104 Identities=24% Similarity=0.302 Sum_probs=70.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccchh---------hhHHhhc
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKG---------KLNEELK 81 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~~~ 81 (507)
+|+|+|.+|||||||+|+|++.+. ......+..|.. ..+...+..+.++||||...... .....+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~--~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKL--AKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTS--SEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhcccc--ccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 699999999999999999998652 222222233322 22234567788999999854211 1224458
Q ss_pred cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEec
Q 010548 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCK 124 (507)
Q Consensus 82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK 124 (507)
.+|++++|+|++++.. +... .++..++ . ++|+++|.||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~-~~~~~l~-~--~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDK-NILRELK-N--KKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHH-HHHHHHH-T--TSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHH-HHHHHHh-c--CCCEEEEEcC
Confidence 9999999999887433 2222 2666665 3 8999999998
No 306
>PLN03127 Elongation factor Tu; Provisional
Probab=99.48 E-value=3.6e-13 Score=139.79 Aligned_cols=164 Identities=13% Similarity=0.136 Sum_probs=103.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcC------CCCCCC-------CCCCCCeeeC---CcccCCceEEEEEeCCCCcc
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATE------SVPEKV-------PPVHAPTRLP---PDFYPDRVPVTIIDTSSSLE 71 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~------~~~~~~-------~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~ 71 (507)
..++.++|+++|+.++|||||+++|.+. .....+ .....++|+. ..+..++.++.++||||+..
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 3456799999999999999999999732 100000 0011233322 23445667899999999988
Q ss_pred chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCcc-chhhhhHHHHHHhcc
Q 010548 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFRE 149 (507)
Q Consensus 72 ~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~ 149 (507)
+.......+..+|++++|+|++++...+.. ..+..+... ++| +|+++||+|+.+..... ....++..+...++.
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt~--e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 877666777889999999999876443332 255556666 688 57899999997532210 011122233332221
Q ss_pred ---cCcEEEeCcc---cCCC-------chHHHHHHHHHH
Q 010548 150 ---IETCVECSAT---TMIQ-------VPDVFYYAQKAV 175 (507)
Q Consensus 150 ---~~~~~~~SA~---~g~g-------i~~l~~~i~~~i 175 (507)
..+++++||. +|.| +.+|++.+.+.+
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 2378888886 4555 566777666554
No 307
>PRK00049 elongation factor Tu; Reviewed
Probab=99.48 E-value=4.4e-13 Score=137.78 Aligned_cols=163 Identities=13% Similarity=0.166 Sum_probs=105.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC---CC----------CCCCCCCeeeC---CcccCCceEEEEEeCCCCccc
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP---EK----------VPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLEN 72 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~---~~----------~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~ 72 (507)
..+.++|+++|+.++|||||+++|++.... .. ......+.|+. ..+..++..+.++||||+.++
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 356799999999999999999999873110 00 00012233322 223345678999999999877
Q ss_pred hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEE-EEEecccCCCCCCc-cchhhhhHHHHHHhcc-
Q 010548 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII-VAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE- 149 (507)
Q Consensus 73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~pii-lv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~- 149 (507)
.......+..+|++++|+|+..+....... ++..+... ++|++ +++||+|+.+.... .....++..+...++.
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt~~--~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQTRE--HILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchHHHH--HHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 777777889999999999998764433322 55666665 68976 58999999753221 0112233334333332
Q ss_pred --cCcEEEeCcccCC----------CchHHHHHHHHHH
Q 010548 150 --IETCVECSATTMI----------QVPDVFYYAQKAV 175 (507)
Q Consensus 150 --~~~~~~~SA~~g~----------gi~~l~~~i~~~i 175 (507)
..+++++||++|. |+..+++.|...+
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 2378999999975 4556666665543
No 308
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.48 E-value=5.2e-13 Score=121.35 Aligned_cols=90 Identities=18% Similarity=0.083 Sum_probs=58.6
Q ss_pred hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCc
Q 010548 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIET 152 (507)
Q Consensus 73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (507)
.......+++||++++|+|++++....... +...+ .++|+++|.||+|+..... .....+.+ ...+ ..
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~~--i~~~~----~~k~~ilVlNK~Dl~~~~~---~~~~~~~~-~~~~--~~ 77 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNPL--LEKIL----GNKPRIIVLNKADLADPKK---TKKWLKYF-ESKG--EK 77 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCChh--hHhHh----cCCCEEEEEehhhcCChHH---HHHHHHHH-HhcC--Ce
Confidence 345567889999999999998765432211 32222 2579999999999964211 11111111 1111 25
Q ss_pred EEEeCcccCCCchHHHHHHHHH
Q 010548 153 CVECSATTMIQVPDVFYYAQKA 174 (507)
Q Consensus 153 ~~~~SA~~g~gi~~l~~~i~~~ 174 (507)
++.+||+++.|++++.+.+...
T Consensus 78 vi~iSa~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 78 VLFVNAKSGKGVKKLLKAAKKL 99 (171)
T ss_pred EEEEECCCcccHHHHHHHHHHH
Confidence 7999999999999998887654
No 309
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.48 E-value=1.8e-14 Score=122.10 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=78.2
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...||++++|...||||||+-||+.++|.-..-.|....|..+.+.+.+....+.|||||||++|..+- +.|||++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALG--PIYYRgSnG 88 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALG--PIYYRGSNG 88 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccC--ceEEeCCCc
Confidence 356999999999999999999999999998888888888888888888888899999999999999988 799999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
++||||+
T Consensus 89 alLVyDI 95 (218)
T KOG0088|consen 89 ALLVYDI 95 (218)
T ss_pred eEEEEec
Confidence 9999996
No 310
>PTZ00369 Ras-like protein; Provisional
Probab=99.48 E-value=1.5e-13 Score=127.08 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=73.3
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+||+++|++|||||||+++|+++++...+.+|.+..+ .+.+.++++...+.+|||+|+++|..++ ..+++.+|++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~--~~~~~~~d~i 80 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMR--DQYMRTGQGF 80 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhH--HHHhhcCCEE
Confidence 358999999999999999999999999888888887666 4556677777889999999999999888 6899999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 81 ilv~D~ 86 (189)
T PTZ00369 81 LCVYSI 86 (189)
T ss_pred EEEEEC
Confidence 999995
No 311
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.48 E-value=1.6e-13 Score=126.68 Aligned_cols=82 Identities=26% Similarity=0.370 Sum_probs=74.4
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|+++.+...+.+|.+.++..+.+..+++...+.+|||+|++++..++ ..+++++|++++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~--~~~~~~~d~iil 78 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLN--NSYYRGAHGYLL 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhH--HHHccCCCEEEE
Confidence 589999999999999999999999988888898888877778887777889999999999998877 789999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~d~ 82 (188)
T cd04125 79 VYDV 82 (188)
T ss_pred EEEC
Confidence 9995
No 312
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.48 E-value=4.6e-13 Score=140.27 Aligned_cols=155 Identities=16% Similarity=0.073 Sum_probs=98.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CCCC------------------CCeeeCC---ccc
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV------------PPVH------------------APTRLPP---DFY 55 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~------------~~~~------------------~~~t~~~---~~~ 55 (507)
.+..++|+++|++++|||||+++|+...-.... .... .+.|+.. .+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 466799999999999999999999865421110 0000 1111111 133
Q ss_pred CCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccc
Q 010548 56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS 135 (507)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~ 135 (507)
.++..+.++||||++.+.......+..+|++++|+|++.+....... ....+.... ..|+|+|+||+|+.+.... .
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~--~~~l~~~lg-~~~iIvvvNKiD~~~~~~~-~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR--HSFIATLLG-IKHLVVAVNKMDLVDYSEE-V 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchH--HHHHHHHhC-CCceEEEEEeeccccchhH-H
Confidence 55778999999998887666666789999999999998764322211 122233332 2578999999999753221 1
Q ss_pred hhh---hhHHHHHHhc--ccCcEEEeCcccCCCchHH
Q 010548 136 LEE---VMGPIMQQFR--EIETCVECSATTMIQVPDV 167 (507)
Q Consensus 136 ~~~---~~~~~~~~~~--~~~~~~~~SA~~g~gi~~l 167 (507)
..+ .+..+...++ ...+++++||++|.|+.++
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 222 2222233332 1237899999999999864
No 313
>PRK09866 hypothetical protein; Provisional
Probab=99.48 E-value=5.3e-12 Score=131.44 Aligned_cols=174 Identities=14% Similarity=0.097 Sum_probs=103.3
Q ss_pred eEEEEEeCCCCccc-----hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc
Q 010548 59 VPVTIIDTSSSLEN-----KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA 133 (507)
Q Consensus 59 ~~~~i~Dt~G~~~~-----~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~ 133 (507)
..+.++||||.... ...+...+.++|+|+||+|++...+..+.. +.+.+++.+.+.|+++|+||+|+.+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~Dee--Ilk~Lkk~~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEE--VREAILAVGQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHH--HHHHHHhcCCCCCEEEEEEcccCCCcccc
Confidence 45679999998642 223446899999999999998865555532 67777776434699999999998643221
Q ss_pred cchhhhhHHHHH-H----hcccCcEEEeCcccCCCchHHHHHHHHHHcCCCCCCCccchhcccHHHHHHHHHHHhhccCC
Q 010548 134 TSLEEVMGPIMQ-Q----FREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHD 208 (507)
Q Consensus 134 ~~~~~~~~~~~~-~----~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~ 208 (507)
..+.+..+.. . ......++++||+.|.|++++++.|.+.-.-|. .. ..+..+.+...+-.-.-.
T Consensus 308 --dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~~l~~-----~~----~~~wv~dfa~~~~gr~w~ 376 (741)
T PRK09866 308 --DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNGKLPP-----PE----QQRWVEDFAHAALGRRWR 376 (741)
T ss_pred --hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCCCCCc-----hh----hhHHHHHHHHHHhccccc
Confidence 1223333322 1 112336899999999999999999876421110 00 011222222222222211
Q ss_pred CCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhh
Q 010548 209 MDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEK 245 (507)
Q Consensus 209 ~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~ 245 (507)
++..-..+.++....+.+.-.+-+.-++.+..++-+.
T Consensus 377 e~d~~d~e~l~~~A~~lwedS~~~~~i~~~i~~~~~~ 413 (741)
T PRK09866 377 HADLADLEHIRHAADQLWEDSLFAQPIQALLHAAYAN 413 (741)
T ss_pred cccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHh
Confidence 2222226677777777666655555555555554443
No 314
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.47 E-value=1.9e-13 Score=124.67 Aligned_cols=81 Identities=21% Similarity=0.379 Sum_probs=70.6
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+.+|+++.+...+.++.+..+. ..+..++...++.+|||+|+++|..++ ..+++++|++|+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~il 78 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLR--PLSYPQTDVFLI 78 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEECCEEEEEEEEECCCchhhhhhh--hhhcCCCCEEEE
Confidence 69999999999999999999999998888888765443 345666677889999999999999887 678999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~d~ 82 (174)
T cd01871 79 CFSL 82 (174)
T ss_pred EEEC
Confidence 9995
No 315
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.47 E-value=1.7e-13 Score=123.90 Aligned_cols=82 Identities=17% Similarity=0.286 Sum_probs=72.2
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++++++.+...+.++.+.++....+...++...+.+|||+|++++..++ ..+++.+|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~i~ 78 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR--DGYYIGGQCAII 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc--HHHhcCCCEEEE
Confidence 589999999999999999999999888888888877766666666677899999999999988776 678999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~d~ 82 (166)
T cd00877 79 MFDV 82 (166)
T ss_pred EEEC
Confidence 9995
No 316
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.47 E-value=1.8e-13 Score=126.83 Aligned_cols=82 Identities=16% Similarity=0.277 Sum_probs=72.5
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCC-CCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
+||+++|++|||||||+++|+++++.. .+.+|.+..+..+.+..++...++.+|||+|++++..+. ..+++++|+++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~~d~ii 78 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS--RIYYRGAKAAI 78 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhh--HhhcCCCCEEE
Confidence 489999999999999999999999874 577888877777778888777889999999999998877 67889999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 79 lv~d~ 83 (193)
T cd04118 79 VCYDL 83 (193)
T ss_pred EEEEC
Confidence 99995
No 317
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.47 E-value=1.7e-13 Score=123.50 Aligned_cols=81 Identities=25% Similarity=0.382 Sum_probs=71.1
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++++++.+...+.+|.+..+ .+.+...+....+.+|||+|++++..++ ..+++.+|++++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~il 78 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMR--DLYMKNGQGFVL 78 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHH--HHHHhhCCEEEE
Confidence 6999999999999999999999998888888877655 3556677667788999999999999988 689999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~d~ 82 (164)
T cd04175 79 VYSI 82 (164)
T ss_pred EEEC
Confidence 9995
No 318
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.47 E-value=3.8e-13 Score=138.68 Aligned_cols=151 Identities=17% Similarity=0.083 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CCC------------------CCCeee---CCcccCCce
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKV------------PPV------------------HAPTRL---PPDFYPDRV 59 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~------------~~~------------------~~~~t~---~~~~~~~~~ 59 (507)
++|+++|+.++|||||+++|+...-.... ... ..+.|+ ...+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999754321110 000 011111 112235677
Q ss_pred EEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccch---
Q 010548 60 PVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL--- 136 (507)
Q Consensus 60 ~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~--- 136 (507)
++.++||||++.|.......+..+|++++|+|+..+...+... ....++... ..++|+|+||+|+...... ..
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~--~~~~~~~~~-~~~iivviNK~D~~~~~~~-~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR--HSYIASLLG-IRHVVLAVNKMDLVDYDEE-VFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH--HHHHHHHcC-CCcEEEEEEecccccchHH-HHHHH
Confidence 8999999999888777777899999999999998764333222 223333432 3468999999998753221 11
Q ss_pred hhhhHHHHHHhccc-CcEEEeCcccCCCchHH
Q 010548 137 EEVMGPIMQQFREI-ETCVECSATTMIQVPDV 167 (507)
Q Consensus 137 ~~~~~~~~~~~~~~-~~~~~~SA~~g~gi~~l 167 (507)
.+....+...++.. .+++++||++|.|+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 12223333433321 26899999999999863
No 319
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.47 E-value=2.3e-13 Score=122.02 Aligned_cols=82 Identities=17% Similarity=0.400 Sum_probs=73.9
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++++++++...+.++.+.++..+.+..++...++.+|||+|++++.... ..+++++|++++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~--~~~~~~~~~ii~ 78 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLI--PSYIRDSSVAVV 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhccCCEEEE
Confidence 489999999999999999999999988888888888888888887666789999999999998877 678999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~d~ 82 (161)
T cd01861 79 VYDI 82 (161)
T ss_pred EEEC
Confidence 9995
No 320
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.46 E-value=2.9e-13 Score=147.43 Aligned_cols=155 Identities=14% Similarity=0.068 Sum_probs=99.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC------------CCCC------------------CCCeeeC---Ccc
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK------------VPPV------------------HAPTRLP---PDF 54 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~------------~~~~------------------~~~~t~~---~~~ 54 (507)
..+..++|+|+|++|+|||||+++|+...-... .... ..+.|+. ..+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 345678999999999999999999996542111 0000 0111111 123
Q ss_pred cCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCcc
Q 010548 55 YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT 134 (507)
Q Consensus 55 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~ 134 (507)
..++.++.++||||++.+.......+..+|++++|+|++.+...+... ....+...+ .+|+|+|+||+|+.+....
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e--~~~~~~~~~-~~~iivvvNK~D~~~~~~~- 175 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR--HSFIASLLG-IRHVVLAVNKMDLVDYDQE- 175 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH--HHHHHHHhC-CCeEEEEEEecccccchhH-
Confidence 355678999999998877666667789999999999998764332221 233344332 3678999999999752211
Q ss_pred chh---hhhHHHHHHhccc-CcEEEeCcccCCCchH
Q 010548 135 SLE---EVMGPIMQQFREI-ETCVECSATTMIQVPD 166 (507)
Q Consensus 135 ~~~---~~~~~~~~~~~~~-~~~~~~SA~~g~gi~~ 166 (507)
... ..+..+...++.. .+++++||++|.|+.+
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 111 2222333343321 2589999999999984
No 321
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.46 E-value=2.9e-13 Score=122.83 Aligned_cols=83 Identities=23% Similarity=0.441 Sum_probs=73.6
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh-hhccchhhcccccEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-KILSNKEALASCDVT 501 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~~~ad~v 501 (507)
.+||+++|++|||||||+++|+++.+...+.++.+.++..+.+...+....+.+|||+|++++. .+. ..+++++|++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--~~~~~~~d~~ 79 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMV--QHYYRNVHAV 79 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhH--HHhhcCCCEE
Confidence 4799999999999999999999999988888888888877778888777899999999999887 455 5788999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 80 i~v~d~ 85 (170)
T cd04115 80 VFVYDV 85 (170)
T ss_pred EEEEEC
Confidence 999995
No 322
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.46 E-value=2.6e-13 Score=125.12 Aligned_cols=81 Identities=22% Similarity=0.387 Sum_probs=69.9
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC-CCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
+||+++|++|||||||+++|+++.+...+.++.+.++.. .+... +....+.+|||+|++++..++ ..++++||+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~ii 77 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLR--PLSYPDVDVLL 77 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHH--HHhCCCCCEEE
Confidence 489999999999999999999999988888887766644 34554 567789999999999999887 67899999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 78 ~v~d~ 82 (187)
T cd04132 78 ICYAV 82 (187)
T ss_pred EEEEC
Confidence 99995
No 323
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.46 E-value=2.6e-13 Score=121.76 Aligned_cols=82 Identities=24% Similarity=0.468 Sum_probs=73.5
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||++++++.++...+.++.+.++....+..++....+.+|||+|++++...+ ..+++++|++++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--~~~~~~~~~~i~ 78 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVT--RSYYRGAAGALL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhH--HHHhcCCCEEEE
Confidence 589999999999999999999999988888888887777777777667789999999999998877 678999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~d~ 82 (161)
T cd04113 79 VYDI 82 (161)
T ss_pred EEEC
Confidence 9995
No 324
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.46 E-value=3e-13 Score=121.49 Aligned_cols=82 Identities=27% Similarity=0.403 Sum_probs=74.0
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++++++++...+.++.+..+..+.+..++...++.+||++|++++...+ ..+++++|++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~~i~ 79 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA--PMYYRGAAAAIV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH--HHHhccCCEEEE
Confidence 799999999999999999999999988778888877777788888778899999999999988877 678999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 80 v~d~ 83 (163)
T cd01860 80 VYDI 83 (163)
T ss_pred EEEC
Confidence 9995
No 325
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.46 E-value=9.7e-13 Score=117.53 Aligned_cols=82 Identities=11% Similarity=-0.008 Sum_probs=53.5
Q ss_pred CEEEEEEeCCChhhHHHHHHhHH-HHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548 84 DAVVLTYACNQQSTLSRLSSYWL-PELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (507)
Q Consensus 84 d~il~V~D~~~~~s~~~~~~~~~-~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 162 (507)
|++++|+|++++.+..... +. ..+... ++|+|+|+||+|+...... ......+....+ ..++.+||++|.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~--i~~~~~~~~--~~p~IiVlNK~Dl~~~~~~---~~~~~~~~~~~~--~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRSPD--IERVLIKEK--GKKLILVLNKADLVPKEVL---RKWLAYLRHSYP--TIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccCHH--HHHHHHhcC--CCCEEEEEechhcCCHHHH---HHHHHHHHhhCC--ceEEEEeccCCc
Confidence 7899999999886554321 22 233333 7999999999999642111 111112222222 357999999999
Q ss_pred CchHHHHHHHHH
Q 010548 163 QVPDVFYYAQKA 174 (507)
Q Consensus 163 gi~~l~~~i~~~ 174 (507)
|++++.+.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999887553
No 326
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.46 E-value=7.4e-13 Score=127.22 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=107.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcc----cCCceEEEEEeCCCCccchh-------hhHHhhc
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDF----YPDRVPVTIIDTSSSLENKG-------KLNEELK 81 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~----~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~ 81 (507)
-|.+||-||+|||||++.+...+-..+ |+ -+|+.... ......|.+-|.||..+-.. ..-.+++
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYp----FTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE 236 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYP----FTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIE 236 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCc----cccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHH
Confidence 477899999999999999998763222 32 23322111 14456799999999765332 2336789
Q ss_pred cCCEEEEEEeCCChhh---HHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEE
Q 010548 82 RADAVVLTYACNQQST---LSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE 155 (507)
Q Consensus 82 ~ad~il~V~D~~~~~s---~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (507)
++-++++|+|++..+. .++... +..++.++. .++|.+||+||+|+....+. .+.....+.+..+....++
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~-i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~--~~~~~~~l~~~~~~~~~~~- 312 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQT-IRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE--LEELKKALAEALGWEVFYL- 312 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHH-HHHHHHHhhHHhccCceEEEEeccCCCcCHHH--HHHHHHHHHHhcCCCccee-
Confidence 9999999999986543 555554 667777764 37999999999997654322 2333344444444432333
Q ss_pred eCcccCCCchHHHHHHHHHHcC
Q 010548 156 CSATTMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 156 ~SA~~g~gi~~l~~~i~~~i~~ 177 (507)
+||.++.|++++...+.+.+..
T Consensus 313 ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 313 ISALTREGLDELLRALAELLEE 334 (369)
T ss_pred eehhcccCHHHHHHHHHHHHHH
Confidence 9999999999999988877643
No 327
>PLN03126 Elongation factor Tu; Provisional
Probab=99.46 E-value=7.3e-13 Score=138.18 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=101.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC------CCC-------CCCCCCeee---CCcccCCceEEEEEeCCCCccc
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP------EKV-------PPVHAPTRL---PPDFYPDRVPVTIIDTSSSLEN 72 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~------~~~-------~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~ 72 (507)
.++.++|+++|++++|||||+++|+..... ..+ .....+.|+ ...+..++.++.++||||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 456789999999999999999999963210 000 001112221 1123456778999999999988
Q ss_pred hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCc-cchhhhhHHHHHHhcc-
Q 010548 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE- 149 (507)
Q Consensus 73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~- 149 (507)
.......+..+|++++|+|+.++...+... ++..+... ++| +|+++||+|+.+.... ....+++..+...++.
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt~e--~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQTKE--HILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 877778889999999999999875444322 55556665 678 7889999999753211 0122234444444321
Q ss_pred --cCcEEEeCcccCCCc
Q 010548 150 --IETCVECSATTMIQV 164 (507)
Q Consensus 150 --~~~~~~~SA~~g~gi 164 (507)
..+++++||.+|.++
T Consensus 234 ~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 234 GDDIPIISGSALLALEA 250 (478)
T ss_pred cCcceEEEEEccccccc
Confidence 237899999998654
No 328
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.46 E-value=1e-12 Score=129.27 Aligned_cols=89 Identities=15% Similarity=0.062 Sum_probs=58.6
Q ss_pred hhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcE
Q 010548 74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC 153 (507)
Q Consensus 74 ~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (507)
..+...++.||++|+|+|+..+.+..... +...+ .++|+++|.||+|+.+... .......+ ...+ .++
T Consensus 16 ~~l~~~l~~aDvIL~VvDar~p~~~~~~~--l~~~~----~~kp~iiVlNK~DL~~~~~---~~~~~~~~-~~~~--~~v 83 (287)
T PRK09563 16 REIKENLKLVDVVIEVLDARIPLSSENPM--IDKII----GNKPRLLILNKSDLADPEV---TKKWIEYF-EEQG--IKA 83 (287)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCCCChh--HHHHh----CCCCEEEEEEchhcCCHHH---HHHHHHHH-HHcC--CeE
Confidence 34567899999999999998875543311 22222 2689999999999854210 11111111 2222 257
Q ss_pred EEeCcccCCCchHHHHHHHHH
Q 010548 154 VECSATTMIQVPDVFYYAQKA 174 (507)
Q Consensus 154 ~~~SA~~g~gi~~l~~~i~~~ 174 (507)
+.+||+++.|++++.+.+.+.
T Consensus 84 i~vSa~~~~gi~~L~~~l~~~ 104 (287)
T PRK09563 84 LAINAKKGQGVKKILKAAKKL 104 (287)
T ss_pred EEEECCCcccHHHHHHHHHHH
Confidence 999999999999988877554
No 329
>PRK12740 elongation factor G; Reviewed
Probab=99.45 E-value=6.9e-13 Score=145.81 Aligned_cols=224 Identities=13% Similarity=0.095 Sum_probs=139.5
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCCC---------------CCCeeeC---CcccCCceEEEEEeCCCCccchhhhHHh
Q 010548 18 VGDRGTGKSSLIAAAATESVPEKVPPV---------------HAPTRLP---PDFYPDRVPVTIIDTSSSLENKGKLNEE 79 (507)
Q Consensus 18 vG~~~vGKSSLin~l~~~~~~~~~~~~---------------~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 79 (507)
+|++|+|||||+++|+...-....... ..+.|+. ..+.++++.+.+|||||+.++......+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999754321111000 0111111 1233568899999999998877778889
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
++.+|++++|+|++.+.+..... ++..+... ++|+++|+||+|+.... .......+...++...-...+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~--~~~~~~~~--~~p~iiv~NK~D~~~~~----~~~~~~~l~~~l~~~~~~~~~p~~ 152 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTET--VWRQAEKY--GVPRIIFVNKMDRAGAD----FFRVLAQLQEKLGAPVVPLQLPIG 152 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHH--HHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHHCCCceeEEeccc
Confidence 99999999999999876665543 44455554 79999999999987642 334555666666543334556666
Q ss_pred cCCCchHHHHHHHHHHcCCC-CCCCc----c-chhcccHHHHHHHHHHHhhccCC------CCCccChhhhHHHHhH---
Q 010548 160 TMIQVPDVFYYAQKAVLHPT-APLFD----H-DEQTLKPRCVRALKRIFIICDHD------MDGALNDAELNEFQVK--- 224 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i~~~~-~~~~~----~-~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~~~el~~~~~~--- 224 (507)
.|.++..+.+.+........ ..... + .........+..+-+....+|++ ++..++.++++...++
T Consensus 153 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~ 232 (668)
T PRK12740 153 EGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATL 232 (668)
T ss_pred CCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 77776555443332211110 00000 0 00000112222222223333332 3456788888877664
Q ss_pred -------hcCCCCCHHHHHHHHHHHHhhccCC
Q 010548 225 -------CFNAPLQPAEIVGVKRVVQEKQHDG 249 (507)
Q Consensus 225 -------~~~~~l~~~~~~~l~~~i~~~~~~~ 249 (507)
+++++....|++.+++.+...+|+-
T Consensus 233 ~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp 264 (668)
T PRK12740 233 AGEIVPVFCGSALKNKGVQRLLDAVVDYLPSP 264 (668)
T ss_pred cCCEEEEEeccccCCccHHHHHHHHHHHCCCh
Confidence 7899999999999999999999975
No 330
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.45 E-value=2.1e-13 Score=126.21 Aligned_cols=80 Identities=23% Similarity=0.310 Sum_probs=69.8
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv 504 (507)
||+++|++|||||||+++|+++++...+.++.+..+. +.+...+....+.+|||+|+++|..++ ..+++.+|++++|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~~ilv 77 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALR--DQWIREGEGFILV 77 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHH--HHHHHhCCEEEEE
Confidence 6899999999999999999999998888888876653 445566666789999999999999887 6899999999999
Q ss_pred EeC
Q 010548 505 YDR 507 (507)
Q Consensus 505 ~D~ 507 (507)
||+
T Consensus 78 ~d~ 80 (190)
T cd04144 78 YSI 80 (190)
T ss_pred EEC
Confidence 995
No 331
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.45 E-value=3.1e-12 Score=121.94 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=106.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchh-------hhHHhhc
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKG-------KLNEELK 81 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~ 81 (507)
..+|++||.|+||||||+++|++.+...+ ..+-+| ++..+..++..++++|+||.-+..+ ..-...+
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva---~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVA---DYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCcccc---ccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 46899999999999999999998773222 112223 5666778899999999999764332 2335789
Q ss_pred cCCEEEEEEeCCChhh-HHHHHHh----------------------------------------HHHHHHh---------
Q 010548 82 RADAVVLTYACNQQST-LSRLSSY----------------------------------------WLPELRR--------- 111 (507)
Q Consensus 82 ~ad~il~V~D~~~~~s-~~~~~~~----------------------------------------~~~~l~~--------- 111 (507)
.||++++|+|+....+ .+.+... ....++.
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999986654 3222221 1111111
Q ss_pred ----------------cCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548 112 ----------------LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 112 ----------------~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i 175 (507)
...-+|.+.|.||+|+... +....+.+.. .++.+||+.+.|+++|.+.|.+.+
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-------e~~~~l~~~~----~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-------EELERLARKP----NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-------HHHHHHHhcc----ceEEEecccCCCHHHHHHHHHHhh
Confidence 1113899999999998762 3334444443 589999999999999999999876
No 332
>PLN03108 Rab family protein; Provisional
Probab=99.45 E-value=4.2e-13 Score=126.16 Aligned_cols=84 Identities=21% Similarity=0.368 Sum_probs=76.3
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||+++|++.++...+.++.+.++....+.+.+....+.+|||+|++++..++ ..+++.+|++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~--~~~~~~ad~~ 82 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSIT--RSYYRGAAGA 82 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHhccCCEE
Confidence 46899999999999999999999999998888999988887778888777789999999999998877 6889999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 83 vlv~D~ 88 (210)
T PLN03108 83 LLVYDI 88 (210)
T ss_pred EEEEEC
Confidence 999995
No 333
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.44 E-value=3.5e-13 Score=124.63 Aligned_cols=80 Identities=23% Similarity=0.374 Sum_probs=70.5
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv 504 (507)
||+++|++|||||||+++|.++.+...+.+|.+..+. +.+..++....+.+|||+|+++|..++ ..+++++|++++|
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~--~~~~~~a~~~ilv 78 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLR--SLSYADTDVIMLC 78 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccc--cccccCCCEEEEE
Confidence 8999999999999999999999999888888887664 455666667889999999999998887 5789999999999
Q ss_pred EeC
Q 010548 505 YDR 507 (507)
Q Consensus 505 ~D~ 507 (507)
||+
T Consensus 79 ~dv 81 (189)
T cd04134 79 FSV 81 (189)
T ss_pred EEC
Confidence 995
No 334
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.44 E-value=4.3e-13 Score=120.79 Aligned_cols=119 Identities=20% Similarity=0.275 Sum_probs=78.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHH---hhccCCEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNE---ELKRADAVVL 88 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~~~ad~il~ 88 (507)
.-.|+|+|+.|+|||+|+.+|..+.....+.+..+...... -...+..+.++|+||+.+.+..... +...+.+|||
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf 81 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF 81 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence 34699999999999999999999876666665544433222 1234567999999999887764444 4889999999
Q ss_pred EEeCCC-hhhHHHHHHhHHHHHHhc---CCCCcEEEEEecccCCCCC
Q 010548 89 TYACNQ-QSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDH 131 (507)
Q Consensus 89 V~D~~~-~~s~~~~~~~~~~~l~~~---~~~~piilv~NK~Dl~~~~ 131 (507)
|+|++. .....++.++++..+... ...+|++|++||.|+....
T Consensus 82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 999974 445666666566555432 2479999999999997653
No 335
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.44 E-value=4.4e-13 Score=124.14 Aligned_cols=82 Identities=24% Similarity=0.435 Sum_probs=71.3
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCC-CCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
+||+++|++|||||||+++|+++++.. .+.++.+..+..+.+.+++....+.+|||+|++++..+. ..+++.+|+++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~ad~~i 78 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVT--HAYYRDAHALL 78 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhh--HHHccCCCEEE
Confidence 589999999999999999999999864 566777777766667777777899999999999998877 67899999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 79 ~v~D~ 83 (191)
T cd04112 79 LLYDI 83 (191)
T ss_pred EEEEC
Confidence 99995
No 336
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.44 E-value=4.7e-13 Score=121.31 Aligned_cols=82 Identities=21% Similarity=0.412 Sum_probs=73.8
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||++++++..+...+.++.+.++..+.+..++....+.+||++|++.+..++ ..++++||++++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--~~~~~~~d~~i~ 78 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLG--VAFYRGADCCVL 78 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHH--HHHhcCCCEEEE
Confidence 589999999999999999999999888888888888877778888777888999999999998887 689999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~d~ 82 (172)
T cd01862 79 VYDV 82 (172)
T ss_pred EEEC
Confidence 9996
No 337
>PRK00098 GTPase RsgA; Reviewed
Probab=99.44 E-value=1.4e-12 Score=128.88 Aligned_cols=85 Identities=16% Similarity=0.120 Sum_probs=61.0
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (507)
Q Consensus 79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (507)
...++|++++|+|++++.+.......|+..++.. ++|+++|+||+|+...... ........+.++. +++++||
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~~~---~~~~~~~~~~~g~--~v~~vSA 149 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDLEE---ARELLALYRAIGY--DVLELSA 149 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCHHH---HHHHHHHHHHCCC--eEEEEeC
Confidence 3589999999999998876666544587777665 7999999999999632111 1122223334442 6899999
Q ss_pred ccCCCchHHHHH
Q 010548 159 TTMIQVPDVFYY 170 (507)
Q Consensus 159 ~~g~gi~~l~~~ 170 (507)
+++.|++++++.
T Consensus 150 ~~g~gi~~L~~~ 161 (298)
T PRK00098 150 KEGEGLDELKPL 161 (298)
T ss_pred CCCccHHHHHhh
Confidence 999999887754
No 338
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.43 E-value=1.2e-12 Score=135.55 Aligned_cols=166 Identities=15% Similarity=0.148 Sum_probs=104.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCccc----------------------------------
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY---------------------------------- 55 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~---------------------------------- 55 (507)
...++|+++|+-..|||||+.+|++..-..-......+.|+..-|.
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4568999999999999999999997432111111111112111000
Q ss_pred --CCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCCh-hhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC
Q 010548 56 --PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQ-STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132 (507)
Q Consensus 56 --~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~-~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~ 132 (507)
.....+.++||||++.|.......+..+|++++|+|++.+ ...+.. + .+..+...+ -.|+|+|+||+|+.+...
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-e-hl~i~~~lg-i~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-E-HLAAVEIMK-LKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-H-HHHHHHHcC-CCcEEEEEecccccCHHH
Confidence 0024689999999988877777888899999999999874 222222 2 223333332 246899999999975322
Q ss_pred ccchhhhhHHHHHH-hcccCcEEEeCcccCCCchHHHHHHHHHHcCC
Q 010548 133 ATSLEEVMGPIMQQ-FREIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 133 ~~~~~~~~~~~~~~-~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~ 178 (507)
.....+++..+... .....+++++||++|.|++.|++.|.+.+..+
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 10111222222222 12234799999999999999999998765433
No 339
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.43 E-value=4.3e-13 Score=120.72 Aligned_cols=81 Identities=22% Similarity=0.400 Sum_probs=70.1
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|+++.+...+.++.+..+ .+.+..++...++.+|||+|++++..++ ..+++.+|++++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~--~~~~~~~~~~i~ 77 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMR--DQYMRTGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHH--HHHHhhCCEEEE
Confidence 5899999999999999999999999888888776544 4456666677889999999999998887 678999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 78 v~d~ 81 (164)
T smart00173 78 VYSI 81 (164)
T ss_pred EEEC
Confidence 9995
No 340
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.43 E-value=5.4e-13 Score=120.43 Aligned_cols=81 Identities=23% Similarity=0.419 Sum_probs=69.6
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|+++++...+.++.+..+ .+.+...++...+.+|||+|++++..+. ..+++.+|++++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~il 78 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQ--RLSISKGHAFIL 78 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHH--HHHhhcCCEEEE
Confidence 7999999999999999999999999888888877555 3445555567789999999999998877 678899999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~d~ 82 (165)
T cd04140 79 VYSV 82 (165)
T ss_pred EEEC
Confidence 9995
No 341
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.42 E-value=7.5e-13 Score=118.74 Aligned_cols=82 Identities=27% Similarity=0.427 Sum_probs=72.9
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|++..+...+.++.+.++....+...+...++.+|||+|++++.... ..+++.+|++++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~d~~i~ 78 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT--SSYYRGAQGVIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhh--HHHhCCCCEEEE
Confidence 589999999999999999999999988788888888877777777667889999999999988776 678999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~d~ 82 (161)
T cd01863 79 VYDV 82 (161)
T ss_pred EEEC
Confidence 9995
No 342
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.42 E-value=4.8e-13 Score=128.53 Aligned_cols=81 Identities=23% Similarity=0.428 Sum_probs=70.4
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|+++++...+.+|++ ++..+.+.+++...++.||||+|++.|..++ ..+++.+|++|+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~--~~~~~~ad~iIl 77 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMR--RLSILTGDVFIL 77 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHH--HHHhccCCEEEE
Confidence 5899999999999999999999999888877776 4555667777777889999999999998876 567899999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 78 Vfdv 81 (247)
T cd04143 78 VFSL 81 (247)
T ss_pred EEeC
Confidence 9995
No 343
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.42 E-value=3.9e-12 Score=118.31 Aligned_cols=165 Identities=18% Similarity=0.105 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccchh---hh--------HH
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKG---KL--------NE 78 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~---~~--------~~ 78 (507)
++|+++|.+|||||||+|++++......... ..+.|.. ......+..+.++||||...... .. ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~-~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLS-ASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccC-CCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 4799999999999999999998764322211 1122211 12224577899999999765421 11 12
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCC---CCcEEEEEecccCCCCCCccc----hhhhhHHHHHHhcccC
Q 010548 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGDHNATS----LEEVMGPIMQQFREIE 151 (507)
Q Consensus 79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~ 151 (507)
...++|++|+|+++.+ .+-.+. ..++.+++... -.++++|.||+|......... .......+.+..+.
T Consensus 80 ~~~g~~~illVi~~~~-~t~~d~--~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~-- 154 (196)
T cd01852 80 SAPGPHAFLLVVPLGR-FTEEEE--QAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG-- 154 (196)
T ss_pred cCCCCEEEEEEEECCC-cCHHHH--HHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC--
Confidence 3467899999999887 343332 25556655422 268899999999765432200 11344555555543
Q ss_pred cEEEe-----CcccCCCchHHHHHHHHHHcCCCCCCC
Q 010548 152 TCVEC-----SATTMIQVPDVFYYAQKAVLHPTAPLF 183 (507)
Q Consensus 152 ~~~~~-----SA~~g~gi~~l~~~i~~~i~~~~~~~~ 183 (507)
.++.. |+..+.++.+|++.|.+.+.....+.|
T Consensus 155 r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~ 191 (196)
T cd01852 155 RYVAFNNKAKGEEQEQQVKELLAKVESMVKENGGKPY 191 (196)
T ss_pred eEEEEeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCC
Confidence 23333 356788999999999888765444333
No 344
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.42 E-value=7.1e-13 Score=119.07 Aligned_cols=82 Identities=28% Similarity=0.475 Sum_probs=73.2
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||++++++..+...+.++.+.++....+..++....+.+||++|++++.... ..+++.||++++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~~il 78 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSIT--SSYYRGAVGALL 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHhCCCCEEEE
Confidence 589999999999999999999999988888888888877777777666789999999999988777 688999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~d~ 82 (164)
T smart00175 79 VYDI 82 (164)
T ss_pred EEEC
Confidence 9995
No 345
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.42 E-value=6.9e-13 Score=119.23 Aligned_cols=82 Identities=21% Similarity=0.360 Sum_probs=70.5
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+||+++|++|||||||+++++++.+...+.++.+..+ .+...+.+...++.+|||+|++++..++ ..+++++|+++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~i 78 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMR--EQYMRTGEGFL 78 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHH--HHHHhhCCEEE
Confidence 47999999999999999999999998877777776544 4455667667789999999999999887 68899999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 79 lv~d~ 83 (164)
T cd04145 79 LVFSV 83 (164)
T ss_pred EEEEC
Confidence 99995
No 346
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.42 E-value=7.7e-13 Score=118.81 Aligned_cols=81 Identities=25% Similarity=0.381 Sum_probs=74.8
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv 504 (507)
||+++|+++||||||+++|.++.+...+.+|.+.+...+.+...+....+.+||++|++++..+. ...++++|++++|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--~~~~~~~~~~ii~ 78 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLR--DIFYRNSDAIIIV 78 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHH--HHHHTTESEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 89999999999999999999999999999999888888888888888899999999999998877 6789999999999
Q ss_pred EeC
Q 010548 505 YDR 507 (507)
Q Consensus 505 ~D~ 507 (507)
||+
T Consensus 79 fd~ 81 (162)
T PF00071_consen 79 FDV 81 (162)
T ss_dssp EET
T ss_pred ccc
Confidence 985
No 347
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.41 E-value=7.1e-13 Score=120.64 Aligned_cols=81 Identities=20% Similarity=0.397 Sum_probs=69.6
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|.++.+...+.+|+...+ ...+..++...++.+|||+|++++..++ ..+++++|++++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~a~~~i~ 77 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNF-SVVVLVDGKPVRLQLCDTAGQDEFDKLR--PLCYPDTDVFLL 77 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCEEEEEEEEECCCChhhcccc--ccccCCCcEEEE
Confidence 5899999999999999999999999888888775444 4456677667889999999999999887 568999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 78 v~d~ 81 (173)
T cd04130 78 CFSV 81 (173)
T ss_pred EEEC
Confidence 9995
No 348
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.41 E-value=5.6e-13 Score=124.00 Aligned_cols=84 Identities=25% Similarity=0.339 Sum_probs=67.5
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhcc------chhhccc
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS------NKEALAS 497 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~ 497 (507)
+||+++|++|||||||+++|++++|...+.|+.+.+.....+..+|....+.+|||+|.+++..... ...+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999988888887666556666776778899999999765432110 1345789
Q ss_pred ccEEEEEEeC
Q 010548 498 CDVTIFVYDR 507 (507)
Q Consensus 498 ad~vilv~D~ 507 (507)
||++++|||+
T Consensus 81 ad~iilv~D~ 90 (198)
T cd04142 81 SRAFILVYDI 90 (198)
T ss_pred CCEEEEEEEC
Confidence 9999999996
No 349
>PLN03118 Rab family protein; Provisional
Probab=99.41 E-value=1e-12 Score=123.64 Aligned_cols=83 Identities=28% Similarity=0.434 Sum_probs=72.1
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+||+++|++|||||||+++|+++.+. .+.++.+.++.+..+..++....+.+|||+|+++|..++ ..+++.+|++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d~~ 89 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLT--SSYYRNAQGI 89 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHH--HHHHhcCCEE
Confidence 4589999999999999999999998874 456777777777777777667789999999999999887 6899999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 90 vlv~D~ 95 (211)
T PLN03118 90 ILVYDV 95 (211)
T ss_pred EEEEEC
Confidence 999995
No 350
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.41 E-value=1e-12 Score=118.20 Aligned_cols=82 Identities=28% Similarity=0.442 Sum_probs=70.3
Q ss_pred EEEEEecCCCCchHHHHHHHhcC--CCCCCCCCCccceeEEEEEEcC-CCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~--~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
+||+++|++|||||||++++.++ .+...+.++.+.++..+.+... +...++.+|||+|++++..+. ..+++++|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~ 78 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMV--SNYWESPSV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHH--HHHhCCCCE
Confidence 58999999999999999999865 6778888888877766666554 466899999999999998877 678999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 79 ii~v~d~ 85 (164)
T cd04101 79 FILVYDV 85 (164)
T ss_pred EEEEEEC
Confidence 9999995
No 351
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=2.6e-12 Score=129.68 Aligned_cols=163 Identities=16% Similarity=0.222 Sum_probs=118.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CC----------CCCCCeeeCC---ccc---CCceEEEEEeCCCCccc
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK--VP----------PVHAPTRLPP---DFY---PDRVPVTIIDTSSSLEN 72 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~----------~~~~~~t~~~---~~~---~~~~~~~i~Dt~G~~~~ 72 (507)
+..+++||-+-.-|||||..||+...-... .. .-..++|+.. .+. ...+.++++||||+-+|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 345799999999999999999986442111 00 1222344221 111 34589999999999999
Q ss_pred hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccC-
Q 010548 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE- 151 (507)
Q Consensus 73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~- 151 (507)
.......+..||++|+|+|+..+-.-+.+...|+. ++ .+.-+|.|+||+|++..+.. ....++.+-|....
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lA-fe---~~L~iIpVlNKIDlp~adpe----~V~~q~~~lF~~~~~ 210 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLA-FE---AGLAIIPVLNKIDLPSADPE----RVENQLFELFDIPPA 210 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHHHHHHHH-HH---cCCeEEEeeeccCCCCCCHH----HHHHHHHHHhcCCcc
Confidence 99999999999999999999998666665543322 22 26889999999999987433 44445555554332
Q ss_pred cEEEeCcccCCCchHHHHHHHHHHcCCCCC
Q 010548 152 TCVECSATTMIQVPDVFYYAQKAVLHPTAP 181 (507)
Q Consensus 152 ~~~~~SA~~g~gi~~l~~~i~~~i~~~~~~ 181 (507)
+++.+|||+|.|+.+++++|++.+..|...
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~rVPpP~~~ 240 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIRRVPPPKGI 240 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHhhCCCCCCC
Confidence 689999999999999999999998776543
No 352
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.41 E-value=3.6e-12 Score=125.27 Aligned_cols=83 Identities=18% Similarity=0.129 Sum_probs=61.6
Q ss_pred hhccCCEEEEEEeCCChh-hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548 79 ELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (507)
Q Consensus 79 ~~~~ad~il~V~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (507)
.+.++|++++|+|++++. ++..+.. |+..+... ++|+++|+||+|+..... ...........+ .+++.+|
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr-~L~~~~~~--~ip~iIVlNK~DL~~~~~----~~~~~~~~~~~g--~~v~~vS 145 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDR-YLVAAEAA--GIEPVIVLTKADLLDDEE----EELELVEALALG--YPVLAVS 145 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHH-HHHHHHHc--CCCEEEEEEHHHCCChHH----HHHHHHHHHhCC--CeEEEEE
Confidence 478999999999999987 7787775 87777765 799999999999965311 111122223333 2689999
Q ss_pred cccCCCchHHHHH
Q 010548 158 ATTMIQVPDVFYY 170 (507)
Q Consensus 158 A~~g~gi~~l~~~ 170 (507)
|+++.|+++++..
T Consensus 146 A~~g~gi~~L~~~ 158 (287)
T cd01854 146 AKTGEGLDELREY 158 (287)
T ss_pred CCCCccHHHHHhh
Confidence 9999999887654
No 353
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.40 E-value=4.6e-12 Score=128.42 Aligned_cols=97 Identities=16% Similarity=0.134 Sum_probs=65.7
Q ss_pred ccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc-cchhhhhHHHHHHhc
Q 010548 70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFR 148 (507)
Q Consensus 70 ~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~ 148 (507)
+++..+...+.+.++++++|+|+.+... .|.+.+.+...++|+++|+||+|+...... ......+..+.+..+
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g 124 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG 124 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence 4566777788899999999999977532 255555555447899999999999753221 001111222344444
Q ss_pred cc-CcEEEeCcccCCCchHHHHHHH
Q 010548 149 EI-ETCVECSATTMIQVPDVFYYAQ 172 (507)
Q Consensus 149 ~~-~~~~~~SA~~g~gi~~l~~~i~ 172 (507)
.. ..++.+||++|.|++++++.|.
T Consensus 125 ~~~~~i~~vSAk~g~gv~eL~~~l~ 149 (360)
T TIGR03597 125 LKPVDIILVSAKKGNGIDELLDKIK 149 (360)
T ss_pred CCcCcEEEecCCCCCCHHHHHHHHH
Confidence 21 2489999999999999998763
No 354
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.40 E-value=8.9e-13 Score=122.59 Aligned_cols=77 Identities=17% Similarity=0.263 Sum_probs=70.6
Q ss_pred ecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548 429 FGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 429 vG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
||++|||||||+++|+++.+...+.+|.+.++....+.++++..++.||||+|+++|..++ ..+|+++|++++|||+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~--~~~~~~ad~~ilV~D~ 77 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLR--DGYYIQGQCAIIMFDV 77 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhh--HHHhcCCCEEEEEEEC
Confidence 6999999999999999999988888999888877778888788899999999999999888 6899999999999996
No 355
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.39 E-value=6.4e-14 Score=115.37 Aligned_cols=78 Identities=22% Similarity=0.390 Sum_probs=70.7
Q ss_pred EecCCCCchHHHHHHHhcCCCCCC-CCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEEEe
Q 010548 428 LFGPQNAGKSALLNSFLERPFSEN-YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYD 506 (507)
Q Consensus 428 ivG~~~vGKSsll~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D 506 (507)
++|++++|||+|+-||-.+.|... ...|.|.+|..+.+..++.++++++|||+||++|+++. ..|||+||+.+++||
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt--~ayyrda~allllyd 79 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVT--HAYYRDADALLLLYD 79 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhh--Hhhhcccceeeeeee
Confidence 689999999999999988877543 34688999999999999999999999999999999998 789999999999999
Q ss_pred C
Q 010548 507 R 507 (507)
Q Consensus 507 ~ 507 (507)
+
T Consensus 80 i 80 (192)
T KOG0083|consen 80 I 80 (192)
T ss_pred c
Confidence 6
No 356
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.39 E-value=1.2e-12 Score=118.44 Aligned_cols=81 Identities=26% Similarity=0.404 Sum_probs=71.6
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|+++.+...+.++.+..+ .+.+..++...++.+|||+|+++|..++ ..+++.++++++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~vl 78 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMR--ELYIKSGQGFLL 78 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhh--HHHHhhCCEEEE
Confidence 7999999999999999999999999888888877555 5666777677899999999999999888 688999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~~~ 82 (168)
T cd04177 79 VYSV 82 (168)
T ss_pred EEEC
Confidence 9985
No 357
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.7e-12 Score=132.05 Aligned_cols=156 Identities=16% Similarity=0.142 Sum_probs=112.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-----eCCcccC-CceEEEEEeCCCCccchhhhHHhhccCC
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-----LPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRAD 84 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-----~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (507)
+..-|+++|+-.-|||||+..+-+.+...... .++| +....+. ....+.++||||++-|..+...-..-+|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~Ea---GGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtD 80 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEA---GGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTD 80 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccC---CceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCcccc
Confidence 34579999999999999999998766433322 2233 1111111 3467999999999999999988889999
Q ss_pred EEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchh---hhhHHHHHHhcccCcEEEeCcccC
Q 010548 85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE---EVMGPIMQQFREIETCVECSATTM 161 (507)
Q Consensus 85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~SA~~g 161 (507)
++++|+|++++--.+.++ -++.++.. +.|+++++||+|.++.... ... .+.......++....++++||++|
T Consensus 81 IaILVVa~dDGv~pQTiE--AI~hak~a--~vP~iVAiNKiDk~~~np~-~v~~el~~~gl~~E~~gg~v~~VpvSA~tg 155 (509)
T COG0532 81 IAILVVAADDGVMPQTIE--AINHAKAA--GVPIVVAINKIDKPEANPD-KVKQELQEYGLVPEEWGGDVIFVPVSAKTG 155 (509)
T ss_pred EEEEEEEccCCcchhHHH--HHHHHHHC--CCCEEEEEecccCCCCCHH-HHHHHHHHcCCCHhhcCCceEEEEeeccCC
Confidence 999999999975555544 34445555 8999999999999865322 111 111223444555557999999999
Q ss_pred CCchHHHHHHHHH
Q 010548 162 IQVPDVFYYAQKA 174 (507)
Q Consensus 162 ~gi~~l~~~i~~~ 174 (507)
+|+++|++.+.-.
T Consensus 156 ~Gi~eLL~~ill~ 168 (509)
T COG0532 156 EGIDELLELILLL 168 (509)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999987654
No 358
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.38 E-value=2e-11 Score=124.62 Aligned_cols=81 Identities=23% Similarity=0.384 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCC--CCee---eCCc-----------------cc-CCceEEEEEeCCC
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVH--APTR---LPPD-----------------FY-PDRVPVTIIDTSS 68 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~--~~~t---~~~~-----------------~~-~~~~~~~i~Dt~G 68 (507)
++|+|||.||||||||+|+|++..+.. +++... +..- +... .. .....+++|||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999877533 233211 1110 1000 00 1236789999999
Q ss_pred Ccc----chhhhH---HhhccCCEEEEEEeCC
Q 010548 69 SLE----NKGKLN---EELKRADAVVLTYACN 93 (507)
Q Consensus 69 ~~~----~~~~~~---~~~~~ad~il~V~D~~ 93 (507)
... ...+.. ..++.||++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 642 233333 3489999999999997
No 359
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.38 E-value=2.3e-12 Score=133.95 Aligned_cols=154 Identities=14% Similarity=0.110 Sum_probs=101.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC------C------------------C----CCCCCeeeC---CcccCC
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK------V------------------P----PVHAPTRLP---PDFYPD 57 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~------~------------------~----~~~~~~t~~---~~~~~~ 57 (507)
..+.++|+++|+.++|||||+.+|+...-... + . ....+.|+. ..+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 35678999999999999999999974321000 0 0 001112211 123456
Q ss_pred ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhH-------HHHHHhHHHHHHhcCCCC-cEEEEEecccCCC
Q 010548 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTL-------SRLSSYWLPELRRLEIKV-PIIVAGCKLDLRG 129 (507)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~-------~~~~~~~~~~l~~~~~~~-piilv~NK~Dl~~ 129 (507)
+..++++||||+++|.......+..+|++|+|+|++++. + ....+ .+..++.. ++ ++|+++||+|+..
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~e-h~~~~~~~--gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTRE-HALLAFTL--GVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHH-HHHHHHHc--CCCcEEEEEEcccCCc
Confidence 789999999999999998899999999999999998741 2 12222 33334444 56 4788999999862
Q ss_pred CC--Cc--cchhhhhHHHHHHhcc---cCcEEEeCcccCCCchH
Q 010548 130 DH--NA--TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPD 166 (507)
Q Consensus 130 ~~--~~--~~~~~~~~~~~~~~~~---~~~~~~~SA~~g~gi~~ 166 (507)
.. .. ....+++..+.++.+. ..+++++||++|.|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 11 10 0123344555555542 13799999999999864
No 360
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.38 E-value=4e-12 Score=132.17 Aligned_cols=154 Identities=15% Similarity=0.108 Sum_probs=99.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------------C--CCCCCCeeeC---CcccCC
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--------------------------V--PPVHAPTRLP---PDFYPD 57 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--------------------------~--~~~~~~~t~~---~~~~~~ 57 (507)
..+.++|+++|+.++|||||+.+|+...-... . .....+.|+. ..+..+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 35678999999999999999999985221000 0 0011122211 223466
Q ss_pred ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhh---H---HHHHHhHHHHHHhcCCCCc-EEEEEecccCCC-
Q 010548 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQST---L---SRLSSYWLPELRRLEIKVP-IIVAGCKLDLRG- 129 (507)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s---~---~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~- 129 (507)
+..+.++||||+.+|.......+..+|++++|+|++.+.- + ....+ .+..++.. ++| +|+++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~e-h~~~~~~~--gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTRE-HALLAFTL--GVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHH-HHHHHHHc--CCCeEEEEEEccccccc
Confidence 7899999999999998888888999999999999987531 0 12222 33345555 666 679999999542
Q ss_pred -CCCccchh---hhhHHHHHHhcc---cCcEEEeCcccCCCchH
Q 010548 130 -DHNATSLE---EVMGPIMQQFRE---IETCVECSATTMIQVPD 166 (507)
Q Consensus 130 -~~~~~~~~---~~~~~~~~~~~~---~~~~~~~SA~~g~gi~~ 166 (507)
..+. ..+ .++..+....+. ..+++++||.+|.|+.+
T Consensus 161 ~~~~~-~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQE-RYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHH-HHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1111 122 233333333332 23789999999999964
No 361
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.38 E-value=1.4e-12 Score=118.67 Aligned_cols=79 Identities=23% Similarity=0.375 Sum_probs=68.3
Q ss_pred EEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEEE
Q 010548 426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVY 505 (507)
Q Consensus 426 v~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~ 505 (507)
|+++|++|||||||+++|+++.+...+.++....+. ..+..++....+.+|||+|+++|..++ ..+++++|++++||
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~ilv~ 77 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRLR--PLSYPDTDVFLICF 77 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchhc--hhhcCCCCEEEEEE
Confidence 589999999999999999999998888888776554 455667677789999999999998877 67899999999999
Q ss_pred eC
Q 010548 506 DR 507 (507)
Q Consensus 506 D~ 507 (507)
|+
T Consensus 78 d~ 79 (174)
T smart00174 78 SV 79 (174)
T ss_pred EC
Confidence 95
No 362
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.37 E-value=2.1e-12 Score=116.95 Aligned_cols=79 Identities=22% Similarity=0.261 Sum_probs=65.2
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|.+|||||||++++..+++.. +.||.+.++. .+.. ...++.+|||+|++++..++ ..++++||++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~--~~~~~~a~~i 80 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLW--RHYYTGTQGL 80 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHH--HHHhccCCEE
Confidence 35899999999999999999999888753 5566665443 2322 56789999999999999887 6899999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 81 i~v~D~ 86 (168)
T cd04149 81 IFVVDS 86 (168)
T ss_pred EEEEeC
Confidence 999996
No 363
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.37 E-value=2.2e-12 Score=115.76 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=64.5
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|.+|||||||++++..+++. .+.||.+.... .+.. ...++.+|||+|++++..++ ..++++||++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~--~~~~~~ad~~i~ 73 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLW--RHYFQNTQGLIF 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHH--HHHhcCCCEEEE
Confidence 58999999999999999999988886 46677665442 2332 56789999999999999888 689999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 74 v~D~ 77 (159)
T cd04150 74 VVDS 77 (159)
T ss_pred EEeC
Confidence 9995
No 364
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.36 E-value=2.7e-12 Score=116.80 Aligned_cols=81 Identities=21% Similarity=0.365 Sum_probs=69.7
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
.||+++|++|||||||+++|+++.+...+.++.+..+. ..+...++...+.+|||+|++++..++ ..+++++|++++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~i~ 78 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLR--PLSYPDTDVILM 78 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhcc--ccccCCCCEEEE
Confidence 48999999999999999999999998888888876664 345666677789999999999998776 568899999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~~~ 82 (175)
T cd01870 79 CFSI 82 (175)
T ss_pred EEEC
Confidence 9985
No 365
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.36 E-value=3.4e-12 Score=120.54 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=76.3
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
....+||+++|++|||||||+++++.+.+...+.+|.+.++....+...++.+.+.+|||+|++++..++ ..+++.++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~--~~~~~~~~ 83 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR--DGYYIKGQ 83 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHhccCC
Confidence 3456899999999999999999999999988899999988877777667788899999999999998887 67899999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 84 ~~i~v~d~ 91 (215)
T PTZ00132 84 CAIIMFDV 91 (215)
T ss_pred EEEEEEEC
Confidence 99999995
No 366
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.36 E-value=3.3e-12 Score=114.30 Aligned_cols=82 Identities=24% Similarity=0.362 Sum_probs=70.7
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|++..+...+.++.+..+....+...+....+.+||++|++.+..++ ..+++.+|++++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--~~~~~~~~~~i~ 78 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALG--PIYYRDADGAIL 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhh--HHHhccCCEEEE
Confidence 589999999999999999999999887777777666666667666666788999999999998877 678899999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~d~ 82 (162)
T cd04123 79 VYDI 82 (162)
T ss_pred EEEC
Confidence 9995
No 367
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.36 E-value=2.7e-12 Score=121.41 Aligned_cols=83 Identities=24% Similarity=0.424 Sum_probs=75.7
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+||+++|++|||||||+++|.++.+...+.++++..+........+...++.+|||+|+++|+.++ ..|++++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~--~~y~~~~~~~l 82 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLR--PEYYRGANGIL 82 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHH--HHHhcCCCEEE
Confidence 3899999999999999999999999999999999988877777666567889999999999999998 78999999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||.
T Consensus 83 ~~~d~ 87 (219)
T COG1100 83 IVYDS 87 (219)
T ss_pred EEEec
Confidence 99985
No 368
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.36 E-value=3.3e-12 Score=117.41 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=66.4
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEc-CCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ-PGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
.+||+++|.+|||||||+++++.+++... .||.+.......+.. ++....+.+|||+|++++..++ ..++++||++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d~i 79 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLW--KSYTRCTDGI 79 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHH--HHHhccCCEE
Confidence 48999999999999999999999888654 566654444333333 3356789999999999998887 6789999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 80 i~v~D~ 85 (183)
T cd04152 80 VFVVDS 85 (183)
T ss_pred EEEEEC
Confidence 999996
No 369
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.35 E-value=2.6e-12 Score=121.15 Aligned_cols=77 Identities=23% Similarity=0.396 Sum_probs=65.0
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|.+|||||||+++|+++++.. +.+|.+..+..... +...+.+|||+|+++|..++ ..+++++|++|+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~--~~~~~~ad~~Il 73 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLG--SMYCRGAAAVIL 73 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhH--HHHhccCCEEEE
Confidence 589999999999999999999999874 56677665543322 45678999999999999887 679999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 74 V~Dv 77 (220)
T cd04126 74 TYDV 77 (220)
T ss_pred EEEC
Confidence 9996
No 370
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=4.6e-12 Score=108.82 Aligned_cols=160 Identities=14% Similarity=0.199 Sum_probs=113.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+.-|++++|-.|+|||||++.|-.++...-.|+..|... .....+.+++.+|.+|+..-+..+..++..+|++++.
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE---~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE---ELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChH---HheecCceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 4556999999999999999999988775444554333322 4456789999999999988888899999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc------------ccCcEEEe
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR------------EIETCVEC 156 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 156 (507)
+|+-+.+.+.+....+-..+... -.+.|+++.+||+|.+..... ........+.+..+ .+...+.|
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se-~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc 173 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASE-DELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC 173 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccH-HHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence 99999988887766443333322 247999999999999876322 11111111111111 11246888
Q ss_pred CcccCCCchHHHHHHHH
Q 010548 157 SATTMIQVPDVFYYAQK 173 (507)
Q Consensus 157 SA~~g~gi~~l~~~i~~ 173 (507)
|...+.|..+.|.++..
T Consensus 174 si~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 174 SIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred EEEccCccceeeeehhh
Confidence 98888887777776644
No 371
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.6e-11 Score=124.03 Aligned_cols=155 Identities=19% Similarity=0.164 Sum_probs=113.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK----VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~----~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (507)
++..-|.|+|+-.-|||||+..|-+...... +...+..++++.. .+.++++.||||+.-|..+...-..-+|+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p---~G~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP---SGKSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC---CCCEEEEecCCcHHHHHHHHhccCccccE
Confidence 4456799999999999999999987664322 2222233333333 56889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHH------HHHhcccCcEEEeCcc
Q 010548 86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI------MQQFREIETCVECSAT 159 (507)
Q Consensus 86 il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~SA~ 159 (507)
+++|+.+.|+--.+.++ -+...+.. +.|+|+++||||.+... .+..++++ ...+|.-.+++++||+
T Consensus 228 vVLVVAadDGVmpQT~E--aIkhAk~A--~VpiVvAinKiDkp~a~----pekv~~eL~~~gi~~E~~GGdVQvipiSAl 299 (683)
T KOG1145|consen 228 VVLVVAADDGVMPQTLE--AIKHAKSA--NVPIVVAINKIDKPGAN----PEKVKRELLSQGIVVEDLGGDVQVIPISAL 299 (683)
T ss_pred EEEEEEccCCccHhHHH--HHHHHHhc--CCCEEEEEeccCCCCCC----HHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence 99999999975444443 33344444 89999999999988653 23333333 2345555589999999
Q ss_pred cCCCchHHHHHHHHHH
Q 010548 160 TMIQVPDVFYYAQKAV 175 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i 175 (507)
+|+|++.|-+.+.-.+
T Consensus 300 ~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 300 TGENLDLLEEAILLLA 315 (683)
T ss_pred cCCChHHHHHHHHHHH
Confidence 9999999998876543
No 372
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.34 E-value=2.3e-12 Score=116.24 Aligned_cols=77 Identities=30% Similarity=0.368 Sum_probs=65.9
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv 504 (507)
+|+++|++|||||||+++|+++.+...+.||.+... ..+.++..++.+|||+|++++..++ ..++++||++++|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~ii~V 74 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYW--KRYLSGSQGLIFV 74 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHH--HHHHhhCCEEEEE
Confidence 379999999999999999999988877888877543 2334467889999999999999888 6899999999999
Q ss_pred EeC
Q 010548 505 YDR 507 (507)
Q Consensus 505 ~D~ 507 (507)
||+
T Consensus 75 ~D~ 77 (164)
T cd04162 75 VDS 77 (164)
T ss_pred EEC
Confidence 995
No 373
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.34 E-value=3.8e-12 Score=115.71 Aligned_cols=81 Identities=23% Similarity=0.413 Sum_probs=68.4
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|+++++...+.++.+..+. ..+..++....+.+|||+|++.|..++ ..+++++|++++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~il 77 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTVGGKQYLLGLYDTAGQEDYDRLR--PLSYPMTDVFLI 77 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEeCCCcccccccc--cccCCCCCEEEE
Confidence 58999999999999999999999998777777664443 345666666778899999999998877 578999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 78 v~~~ 81 (174)
T cd04135 78 CFSV 81 (174)
T ss_pred EEEC
Confidence 9985
No 374
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.33 E-value=7.2e-12 Score=113.30 Aligned_cols=84 Identities=24% Similarity=0.409 Sum_probs=73.3
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+||+++|++|||||||+++++++.+...+.++.+.++....+...+....+.+||++|++.+.... ..+++.+|++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--~~~~~~~d~~ 83 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSIT--QSYYRSANAL 83 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhcCCCEE
Confidence 45899999999999999999999888877777787777777777777667789999999999988876 6789999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 84 i~v~d~ 89 (169)
T cd04114 84 ILTYDI 89 (169)
T ss_pred EEEEEC
Confidence 999995
No 375
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.33 E-value=5.4e-12 Score=112.08 Aligned_cols=82 Identities=28% Similarity=0.481 Sum_probs=73.1
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||++++.+..+...+.++.+.++....+...+....+.+||++|++.+.... ..+++++|++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~d~ii~ 78 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSIT--PSYYRGAHGAIL 78 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHH--HHHhcCCCEEEE
Confidence 589999999999999999999999998888888888877777777667889999999999988877 678899999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|+|+
T Consensus 79 v~d~ 82 (159)
T cd00154 79 VYDI 82 (159)
T ss_pred EEEC
Confidence 9985
No 376
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.33 E-value=5.3e-12 Score=115.96 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=65.5
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||++++..+++.. +.||.+..+. .+.. ....+.+|||+|++++..++ ..+++++|++
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~--~~~~~~ad~i 88 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLW--RHYYQNTNGL 88 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHH--HHHhcCCCEE
Confidence 34899999999999999999999888764 5667665443 2332 56789999999999999887 7899999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
|+|||+
T Consensus 89 I~v~D~ 94 (182)
T PTZ00133 89 IFVVDS 94 (182)
T ss_pred EEEEeC
Confidence 999996
No 377
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.32 E-value=6.2e-12 Score=115.35 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=65.6
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||++++..+++. .+.||.+... ..+.. +...+.+||++|++++..++ ..++++||++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~--~~~~~~i~D~~Gq~~~~~~~--~~~~~~a~~i 88 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLW--RHYFQNTQGL 88 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEE--CCEEEEEEECCCCHHHHHHH--HHHhccCCEE
Confidence 3489999999999999999999988876 4567766443 23332 56789999999999999988 7899999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
|+|||+
T Consensus 89 I~V~D~ 94 (181)
T PLN00223 89 IFVVDS 94 (181)
T ss_pred EEEEeC
Confidence 999996
No 378
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.32 E-value=6.5e-12 Score=114.60 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=65.1
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+||+++|.+|||||||+++|..+++. .+.||.+.++. .+.. +..++.+|||+|++++..++ ..++++||++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~--~~~~~~ad~i 84 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLW--RHYYTNTQGL 84 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHH--HHHhCCCCEE
Confidence 3589999999999999999999887774 45677665443 2332 46789999999999999887 6889999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 85 i~v~D~ 90 (175)
T smart00177 85 IFVVDS 90 (175)
T ss_pred EEEEEC
Confidence 999995
No 379
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=1.1e-11 Score=123.35 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=117.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-------C-C----CCCCCeeeC-----Ccc---cCCceEEEEEeCCCC
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-------V-P----PVHAPTRLP-----PDF---YPDRVPVTIIDTSSS 69 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-------~-~----~~~~~~t~~-----~~~---~~~~~~~~i~Dt~G~ 69 (507)
.+..+..|+-+-.-|||||..||+.....-+ . . ....++|+. ..+ +++.+.++++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 3445689999999999999999986442111 0 0 012233322 112 235789999999999
Q ss_pred ccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc
Q 010548 70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE 149 (507)
Q Consensus 70 ~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 149 (507)
-.|.......+..|.++++|+|++.+-.-+.+.+ .+-.+.. +.-+|-|.||+||+..... ....++..-+|-
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN-~YlAle~---~LeIiPViNKIDLP~Adpe----rvk~eIe~~iGi 158 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLALEN---NLEIIPVLNKIDLPAADPE----RVKQEIEDIIGI 158 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHH-HHHHHHc---CcEEEEeeecccCCCCCHH----HHHHHHHHHhCC
Confidence 9999888999999999999999999865555554 3333332 6889999999999986433 334444444443
Q ss_pred cC-cEEEeCcccCCCchHHHHHHHHHHcCCCC
Q 010548 150 IE-TCVECSATTMIQVPDVFYYAQKAVLHPTA 180 (507)
Q Consensus 150 ~~-~~~~~SA~~g~gi~~l~~~i~~~i~~~~~ 180 (507)
.. ..+.||||+|.||+++++.|++.+..|..
T Consensus 159 d~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 159 DASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred CcchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 21 47999999999999999999999877653
No 380
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.31 E-value=3.1e-12 Score=128.56 Aligned_cols=89 Identities=20% Similarity=0.249 Sum_probs=74.2
Q ss_pred cccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh------hccc
Q 010548 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSN 491 (507)
Q Consensus 418 ~~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~ 491 (507)
+.-+..+|++++|+||||||||+|.++++++.++++.+||||+.+.....- +++.+.++||||.+.-.. +.++
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~iGIeRs 290 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVERIGIERA 290 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHHHHHHHH
Confidence 334556999999999999999999999999999999999999988754444 678899999999865332 2345
Q ss_pred hhhcccccEEEEEEeC
Q 010548 492 KEALASCDVTIFVYDR 507 (507)
Q Consensus 492 ~~~~~~ad~vilv~D~ 507 (507)
...+++||.+++|+|+
T Consensus 291 ~~~i~~ADlvL~v~D~ 306 (454)
T COG0486 291 KKAIEEADLVLFVLDA 306 (454)
T ss_pred HHHHHhCCEEEEEEeC
Confidence 6788999999999996
No 381
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.30 E-value=1.8e-11 Score=122.40 Aligned_cols=163 Identities=17% Similarity=0.144 Sum_probs=112.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCcc----chhhhHH-----
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLE----NKGKLNE----- 78 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~----~~~~~~~----- 78 (507)
+....++|+|-||||||||+|.++... ..+.+...++. ....++.+-.+++++||||.-. ..+.++.
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtrad--vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRAD--DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccc--cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 445689999999999999999888766 33333222222 3445556677899999999753 2222221
Q ss_pred hhccCCEEEEEEeCCC--hhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEe
Q 010548 79 ELKRADAVVLTYACNQ--QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC 156 (507)
Q Consensus 79 ~~~~ad~il~V~D~~~--~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (507)
..+--.+|++++|++. +.|...... ++..|+....|+|.|+|+||+|+..............+....-+.+ +++++
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~Qvk-LfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v-~v~~t 321 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQVK-LYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV-KVVQT 321 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHHH-HHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCc-eEEEe
Confidence 1122357899999886 467776664 8888888888999999999999988766512222333333333332 78999
Q ss_pred CcccCCCchHHHHHHHHHHc
Q 010548 157 SATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 157 SA~~g~gi~~l~~~i~~~i~ 176 (507)
|+.+.+||.++.......++
T Consensus 322 S~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred cccchhceeeHHHHHHHHHH
Confidence 99999999998887776653
No 382
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.30 E-value=1e-11 Score=111.22 Aligned_cols=75 Identities=24% Similarity=0.348 Sum_probs=62.0
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|+++.|...+.|+.+ .+ .+.+.++|....+.+|||+|++. ..+++++|++++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-------~~~~~~~~~~il 71 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-------AQFASWVDAVIF 71 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-------hhHHhcCCEEEE
Confidence 4899999999999999999999998877655533 44 46677877777899999999964 246788999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 72 v~d~ 75 (158)
T cd04103 72 VFSL 75 (158)
T ss_pred EEEC
Confidence 9995
No 383
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.3e-12 Score=127.85 Aligned_cols=86 Identities=17% Similarity=0.154 Sum_probs=73.5
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhh-------hhhccchh
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-------KKILSNKE 493 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~ 493 (507)
+..++|+|+|+||||||||+|.+.++++.++++.+++|++.+...... .+.++.+.||||.++- -.+.++..
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTV-NGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeec-CCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 345899999999999999999999999999999999999999876655 6778899999998761 12344567
Q ss_pred hcccccEEEEEEeC
Q 010548 494 ALASCDVTIFVYDR 507 (507)
Q Consensus 494 ~~~~ad~vilv~D~ 507 (507)
.+++||++++|+|+
T Consensus 345 ~~~~advi~~vvda 358 (531)
T KOG1191|consen 345 RIERADVILLVVDA 358 (531)
T ss_pred HHhhcCEEEEEecc
Confidence 78899999999996
No 384
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.29 E-value=9.6e-12 Score=117.85 Aligned_cols=80 Identities=18% Similarity=0.353 Sum_probs=66.4
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCC-CCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcc-cccEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALA-SCDVT 501 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~-~ad~v 501 (507)
+||+++|++|||||||+++|+++.+. ..+.++++.++..+.+.+.++...+.+|||+|++.+ +. ..+++ ++|++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~--~~~~~~~ad~i 76 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TE--DSCMQYQGDAF 76 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HH--hHHhhcCCCEE
Confidence 58999999999999999999988886 677778776676777888777888999999999832 22 34566 89999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 77 ilV~d~ 82 (221)
T cd04148 77 VVVYSV 82 (221)
T ss_pred EEEEEC
Confidence 999996
No 385
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.29 E-value=6.4e-12 Score=113.30 Aligned_cols=80 Identities=25% Similarity=0.397 Sum_probs=65.4
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhh-hhhccchhhcccccEEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-KKILSNKEALASCDVTIF 503 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-~~~~~~~~~~~~ad~vil 503 (507)
||+++|++|||||||+++++++.+...+.++....+ ...+..+++..++.+|||+|++++ .... ..+++++|++++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--~~~~~~~d~~i~ 77 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQL--ERSIRWADGFVL 77 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchH--HHHHHhCCEEEE
Confidence 689999999999999999999998877877776555 344566667778999999999863 3233 578899999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 78 v~d~ 81 (165)
T cd04146 78 VYSI 81 (165)
T ss_pred EEEC
Confidence 9995
No 386
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.29 E-value=9e-12 Score=121.62 Aligned_cols=140 Identities=16% Similarity=0.212 Sum_probs=82.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-------CCCCee---eCCccc--CCceEEEEEeCCCCccchhh----
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-------VHAPTR---LPPDFY--PDRVPVTIIDTSSSLENKGK---- 75 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~-------~~~~~t---~~~~~~--~~~~~~~i~Dt~G~~~~~~~---- 75 (507)
.++|+++|++|+|||||+|+|++..+...... ...... ....+. +..+++.+|||||.......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999998876443111 111111 111222 33468999999996533210
Q ss_pred ----------hH------------Hhhc--cCCEEEEEEeCCC-hhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548 76 ----------LN------------EELK--RADAVVLTYACNQ-QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (507)
Q Consensus 76 ----------~~------------~~~~--~ad~il~V~D~~~-~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 130 (507)
.. ..+. .+|+++++++.+. +.+..++. +++.+.. ++|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~--~lk~l~~---~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIE--FMKRLSK---RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHH--HHHHHhc---cCCEEEEEECCCcCCH
Confidence 00 1122 4788899888765 22222222 5555543 6899999999999653
Q ss_pred CCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548 131 HNATSLEEVMGPIMQQFREIETCVECSA 158 (507)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (507)
.+...........+..++. +++..+.
T Consensus 159 ~e~~~~k~~i~~~l~~~~i--~~~~~~~ 184 (276)
T cd01850 159 EELKEFKQRIMEDIEEHNI--KIYKFPE 184 (276)
T ss_pred HHHHHHHHHHHHHHHHcCC--ceECCCC
Confidence 2221223334444444442 4565554
No 387
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.29 E-value=1.2e-11 Score=112.05 Aligned_cols=81 Identities=20% Similarity=0.353 Sum_probs=67.4
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|+++.+...+.++....+. ..+...+...++.+|||+|++.+.... ..+++.+|++++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~D~~g~~~~~~~~--~~~~~~~~~~i~ 77 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYS-ATVTVDGKQVNLGLWDTAGQEEYDRLR--PLSYPNTDVFLI 77 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEeCCCcccccccc--hhhcCCCCEEEE
Confidence 58999999999999999999999987677676664443 345556678899999999999887666 567899999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 78 v~d~ 81 (171)
T cd00157 78 CFSV 81 (171)
T ss_pred EEEC
Confidence 9995
No 388
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.29 E-value=9.1e-12 Score=116.03 Aligned_cols=80 Identities=24% Similarity=0.317 Sum_probs=68.1
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv 504 (507)
||+++|++|||||||+++|+++++...+.++... .....+.+.+...++.+|||+|+.+|..++ ..+++.||++++|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~ad~vilv 77 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEVGGVSLTLDILDTSGSYSFPAMR--KLSIQNSDAFALV 77 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEECCEEEEEEEEECCCchhhhHHH--HHHhhcCCEEEEE
Confidence 6899999999999999999999998777777653 445556667666789999999999998877 5789999999999
Q ss_pred EeC
Q 010548 505 YDR 507 (507)
Q Consensus 505 ~D~ 507 (507)
||+
T Consensus 78 ~d~ 80 (198)
T cd04147 78 YAV 80 (198)
T ss_pred EEC
Confidence 995
No 389
>PRK13796 GTPase YqeH; Provisional
Probab=99.29 E-value=5.7e-11 Score=120.60 Aligned_cols=89 Identities=17% Similarity=0.197 Sum_probs=57.3
Q ss_pred HhhccCC-EEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc-cchhhhhHHHHHHhcc-cCcEE
Q 010548 78 EELKRAD-AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE-IETCV 154 (507)
Q Consensus 78 ~~~~~ad-~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~-~~~~~ 154 (507)
..+..++ +|++|+|+.+... .|.+.+.+...++|+++|+||+|+...... ....+....+.+.++. ...++
T Consensus 64 ~~i~~~~~lIv~VVD~~D~~~------s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~ 137 (365)
T PRK13796 64 NGIGDSDALVVNVVDIFDFNG------SWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVV 137 (365)
T ss_pred HhhcccCcEEEEEEECccCCC------chhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence 4455555 9999999987531 256666654447899999999999653211 0011112223333332 12579
Q ss_pred EeCcccCCCchHHHHHHH
Q 010548 155 ECSATTMIQVPDVFYYAQ 172 (507)
Q Consensus 155 ~~SA~~g~gi~~l~~~i~ 172 (507)
.+||+++.|++++++.|.
T Consensus 138 ~vSAk~g~gI~eL~~~I~ 155 (365)
T PRK13796 138 LISAQKGHGIDELLEAIE 155 (365)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999988763
No 390
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.28 E-value=1.5e-11 Score=111.86 Aligned_cols=80 Identities=24% Similarity=0.411 Sum_probs=64.1
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||+++|++|||||||++++.+..+. .+.+|.+ +....+... ..++.+|||+|++++...+ ..+++++|+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~--~~~l~l~D~~G~~~~~~~~--~~~~~~~d~ 84 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYE--GYKLNIWDVGGQKTLRPYW--RNYFESTDA 84 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEEC--CEEEEEEECCCCHHHHHHH--HHHhCCCCE
Confidence 34589999999999999999999988653 4455555 333444443 5778999999999988877 678999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 85 ~i~v~d~ 91 (173)
T cd04154 85 LIWVVDS 91 (173)
T ss_pred EEEEEEC
Confidence 9999995
No 391
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=7.7e-11 Score=127.00 Aligned_cols=232 Identities=11% Similarity=0.077 Sum_probs=147.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC---------------CCeeeC---CcccCCc-eEEEEEeCCCC
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH---------------APTRLP---PDFYPDR-VPVTIIDTSSS 69 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~---------------~~~t~~---~~~~~~~-~~~~i~Dt~G~ 69 (507)
..+..+|.|+|+-.+|||||..+++...-........ .+.|+. ..+.+++ +.++++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 3456789999999999999999998544222211111 111211 1233664 99999999999
Q ss_pred ccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc
Q 010548 70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE 149 (507)
Q Consensus 70 ~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 149 (507)
-+|......+++-+|++++|+|+..+-..+.-. .++...++ ++|.++++||+|....+ .......+...++.
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEt--v~rqa~~~--~vp~i~fiNKmDR~~a~----~~~~~~~l~~~l~~ 158 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTET--VWRQADKY--GVPRILFVNKMDRLGAD----FYLVVEQLKERLGA 158 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHH--HHHHHhhc--CCCeEEEEECccccccC----hhhhHHHHHHHhCC
Confidence 999999999999999999999999885554433 55556665 79999999999987653 33444555566654
Q ss_pred cCcE--EEeCcccCCCchHHHHHHHHHHcCCC-CCCCc-----cchhcccHHHHHHHHHHHhhccCC------CCCccCh
Q 010548 150 IETC--VECSATTMIQVPDVFYYAQKAVLHPT-APLFD-----HDEQTLKPRCVRALKRIFIICDHD------MDGALND 215 (507)
Q Consensus 150 ~~~~--~~~SA~~g~gi~~l~~~i~~~i~~~~-~~~~~-----~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~~ 215 (507)
.... +++.+ ...+....+.+........ ...+. ........+++..+.......|++ ++..++.
T Consensus 159 ~~~~v~~pIg~--~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~ 236 (697)
T COG0480 159 NPVPVQLPIGA--EEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTE 236 (697)
T ss_pred CceeeeccccC--ccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccH
Confidence 3212 22333 2222222222222221111 11110 111122234555555444444432 3445788
Q ss_pred hhhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCCc
Q 010548 216 AELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGV 250 (507)
Q Consensus 216 ~el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~~ 250 (507)
+++....++ .+++++...+++.+++.+.+.+|+=.
T Consensus 237 ~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~ 281 (697)
T COG0480 237 EEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPL 281 (697)
T ss_pred HHHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChh
Confidence 888888776 78889999999999999999999843
No 392
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.27 E-value=1.7e-11 Score=104.06 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=62.0
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCC--CCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFS--ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
||+|+|++|||||||+++|++..+. ..+.++.+..+........+....+.+||++|++.+...+ ...+.++|+++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--~~~~~~~d~~i 78 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQH--QFFLKKADAVI 78 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTS--HHHHHHSCEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccc--cchhhcCcEEE
Confidence 7999999999999999999999886 2333444555655666666566678999999998888765 45589999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 79 lv~D~ 83 (119)
T PF08477_consen 79 LVYDL 83 (119)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 99995
No 393
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.27 E-value=8e-11 Score=106.55 Aligned_cols=56 Identities=23% Similarity=0.159 Sum_probs=43.8
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCc
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 482 (507)
.++++++|.||||||||+|++.+.+...++..+++|+. ...+... ..+.++||+|.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~-~~~~~~~---~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS-MQEVHLD---KKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc-eEEEEeC---CCEEEEECcCC
Confidence 47999999999999999999999887777777776665 3344443 24678999984
No 394
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.27 E-value=1.7e-11 Score=113.62 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=60.3
Q ss_pred EEEEEecCCCCchHHHHH-HHhcCC-----CCCCCCCCccc-e-eEEE-------EEEcCCCeEEEEEEecCCchhhhhh
Q 010548 424 FRCLLFGPQNAGKSALLN-SFLERP-----FSENYAPTTGE-Q-YAVN-------VVDQPGGNKKTLILQEIPEEGVKKI 488 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~-~l~~~~-----~~~~~~~t~~~-~-~~~~-------~~~~~~~~~~~~i~Dt~G~~~~~~~ 488 (507)
+||+++|++|||||||+. ++.++. +...+.||.+. + +... .+.++|..+++.+|||+|++++ +
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--~ 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--D 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--h
Confidence 799999999999999996 666543 44566777752 2 3222 1245667889999999999762 3
Q ss_pred ccchhhcccccEEEEEEeC
Q 010548 489 LSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 489 ~~~~~~~~~ad~vilv~D~ 507 (507)
. ..+|++||++++|||+
T Consensus 81 ~--~~~~~~ad~iilv~d~ 97 (195)
T cd01873 81 R--RFAYGRSDVVLLCFSI 97 (195)
T ss_pred h--cccCCCCCEEEEEEEC
Confidence 3 4689999999999995
No 395
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=3.6e-13 Score=114.39 Aligned_cols=85 Identities=14% Similarity=0.292 Sum_probs=74.8
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC---------CCeEEEEEEecCCchhhhhhccc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP---------GGNKKTLILQEIPEEGVKKILSN 491 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~---------~~~~~~~i~Dt~G~~~~~~~~~~ 491 (507)
++.||.+.+|++||||||++.+|..++|......|.|++|..+.+..+ +..+.+++||||||++|+++.
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT-- 84 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT-- 84 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH--
Confidence 467899999999999999999999999998888999999987766554 134578899999999999998
Q ss_pred hhhcccccEEEEEEeC
Q 010548 492 KEALASCDVTIFVYDR 507 (507)
Q Consensus 492 ~~~~~~ad~vilv~D~ 507 (507)
-..+|+|-+++++||.
T Consensus 85 TAFfRDAMGFlLiFDl 100 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDL 100 (219)
T ss_pred HHHHHhhccceEEEec
Confidence 6799999999999995
No 396
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.26 E-value=2e-11 Score=110.23 Aligned_cols=80 Identities=23% Similarity=0.306 Sum_probs=62.6
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|+++++...+..+. ..+ .......+...++.+|||+|.+.+...+ ..+++.+|++++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~ad~~il 76 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVTPERVPTTIVDTSSRPQDRANL--AAEIRKANVICL 76 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cce-EeeeeecCCeEEEEEEeCCCchhhhHHH--hhhcccCCEEEE
Confidence 489999999999999999999999876544332 222 2223445577889999999998877665 567899999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 77 v~d~ 80 (166)
T cd01893 77 VYSV 80 (166)
T ss_pred EEEC
Confidence 9995
No 397
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.26 E-value=1.1e-10 Score=110.64 Aligned_cols=144 Identities=17% Similarity=0.201 Sum_probs=90.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
..+...|+|+|.+|+|||||++.+.+..-...........++ ....+.++.++||||.. ......++.+|++++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i~i---~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVll 109 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITV---VTGKKRRLTFIECPNDI---NAMIDIAKVADLVLL 109 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccEEE---EecCCceEEEEeCCchH---HHHHHHHHhcCEEEE
Confidence 345678999999999999999999875321111111111121 12356789999999843 333356789999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCCCCcE-EEEEecccCCCCCCccchhhhhHH----HHHHhcccCcEEEeCcccCCC
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPI-IVAGCKLDLRGDHNATSLEEVMGP----IMQQFREIETCVECSATTMIQ 163 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~SA~~g~g 163 (507)
|+|++.+...... .++..++.. ++|. ++|+||+|+.+.... ..+.... +...+....+++.+||++.-.
T Consensus 110 viDa~~~~~~~~~--~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~--~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 110 LIDASFGFEMETF--EFLNILQVH--GFPRVMGVLTHLDLFKKNKT--LRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEecCcCCCHHHH--HHHHHHHHc--CCCeEEEEEeccccCCcHHH--HHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 9999876544432 266666665 5775 459999998743221 1121222 222222234899999998754
Q ss_pred c
Q 010548 164 V 164 (507)
Q Consensus 164 i 164 (507)
+
T Consensus 184 ~ 184 (225)
T cd01882 184 Y 184 (225)
T ss_pred C
Confidence 4
No 398
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.26 E-value=2e-11 Score=109.55 Aligned_cols=81 Identities=26% Similarity=0.398 Sum_probs=69.2
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++++..++...+.++.+..+ .+....+++...+.+|||+|++++.... ..+++.++++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~~~i~ 77 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIR--DNYHRSGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHH--HHHhhcCCEEEE
Confidence 5899999999999999999999999887777766544 3445666677889999999999998877 679999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 78 v~d~ 81 (164)
T cd04139 78 VFSI 81 (164)
T ss_pred EEEC
Confidence 9985
No 399
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.25 E-value=1.9e-11 Score=109.55 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=62.8
Q ss_pred EEEEecCCCCchHHHHHHHhcCCC-CCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+|+++|++|||||||+++|.+..+ ...+.||.+.... .+. .+..++.+|||+|++++..++ ..+++.+|++++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ii~ 74 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLW--EHYYKNIQGIIF 74 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHH--HHHHccCCEEEE
Confidence 589999999999999999998763 4556677764432 222 256788999999999999888 688999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 75 v~D~ 78 (162)
T cd04157 75 VIDS 78 (162)
T ss_pred EEeC
Confidence 9996
No 400
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.25 E-value=4.6e-11 Score=112.54 Aligned_cols=163 Identities=12% Similarity=0.198 Sum_probs=96.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC-cc-cCCceEEEEEeCCCCccchh-----hhHHhhccCCEE
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP-DF-YPDRVPVTIIDTSSSLENKG-----KLNEELKRADAV 86 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~-~~-~~~~~~~~i~Dt~G~~~~~~-----~~~~~~~~ad~i 86 (507)
||+++|++++||||+.+-+..+..+.......++..+.. .+ ......+++||+||+..+.. .....++++.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 799999999999999988876653222211111111111 11 14567999999999975543 345778999999
Q ss_pred EEEEeCCChhhHHHHHH--hHHHHHHhcCCCCcEEEEEecccCCCCCCcc-chhhhhHHHHHHhcc----cCcEEEeCcc
Q 010548 87 VLTYACNQQSTLSRLSS--YWLPELRRLEIKVPIIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFRE----IETCVECSAT 159 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~--~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~SA~ 159 (507)
|+|+|+.+.+-.+++.. ..+..+.+..+++.+.+.++|+|+..+.... ......+.+...... ...++.+|.-
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~ 160 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIW 160 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TT
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCc
Confidence 99999995543333332 1445566677899999999999997642210 111122222222221 1257888887
Q ss_pred cCCCchHHHHHHHHHHcC
Q 010548 160 TMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i~~ 177 (507)
+ +.+-+.+..++..+..
T Consensus 161 D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 161 D-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp S-THHHHHHHHHHHTTST
T ss_pred C-cHHHHHHHHHHHHHcc
Confidence 7 5788888887777653
No 401
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.25 E-value=1.8e-11 Score=100.34 Aligned_cols=135 Identities=21% Similarity=0.245 Sum_probs=93.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhh--h----HHhhccCCEEE
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--L----NEELKRADAVV 87 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~--~----~~~~~~ad~il 87 (507)
|+++||..|+|||||+++|.+.... +. .|..+++... -.+|||| +|... + .....++|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--yk-----KTQAve~~d~----~~IDTPG--Ey~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YK-----KTQAVEFNDK----GDIDTPG--EYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hc-----ccceeeccCc----cccCCch--hhhhhhHHHHHHHHHhhccceee
Confidence 7999999999999999999987621 11 1222222221 2589999 33322 2 23458899999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
+|-.+++++|.-. +.+.... .+|+|-|++|+|+..+..+ .....+..+-| ..++|++|+.++.|++++
T Consensus 70 ~v~~and~~s~f~------p~f~~~~-~k~vIgvVTK~DLaed~dI----~~~~~~L~eaG-a~~IF~~s~~d~~gv~~l 137 (148)
T COG4917 70 YVHAANDPESRFP------PGFLDIG-VKKVIGVVTKADLAEDADI----SLVKRWLREAG-AEPIFETSAVDNQGVEEL 137 (148)
T ss_pred eeecccCccccCC------ccccccc-ccceEEEEecccccchHhH----HHHHHHHHHcC-CcceEEEeccCcccHHHH
Confidence 9999999865322 2222222 4679999999999864333 34455666666 348999999999999999
Q ss_pred HHHHHH
Q 010548 168 FYYAQK 173 (507)
Q Consensus 168 ~~~i~~ 173 (507)
++.+..
T Consensus 138 ~~~L~~ 143 (148)
T COG4917 138 VDYLAS 143 (148)
T ss_pred HHHHHh
Confidence 998864
No 402
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=5.3e-11 Score=106.94 Aligned_cols=158 Identities=23% Similarity=0.250 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhc---cCCEEEEE
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK---RADAVVLT 89 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---~ad~il~V 89 (507)
-.|.++|..++|||+|+-+|..+.+...+++..|..- .+..+.-..+++|.||+.+-+.....++. .+-+++||
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a---~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV 115 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEA---TYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV 115 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeecccee---eEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence 4699999999999999999998876555555444322 22233344899999999887777777776 79999999
Q ss_pred EeCCC-hhhHHHHHHhHHHHHHhc---CCCCcEEEEEecccCCCCCCcc----chhhhhHHHHHHhc-------------
Q 010548 90 YACNQ-QSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNAT----SLEEVMGPIMQQFR------------- 148 (507)
Q Consensus 90 ~D~~~-~~s~~~~~~~~~~~l~~~---~~~~piilv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~------------- 148 (507)
+|... .....++.++++..+... ...+|+++++||.|+....... ..+.++..+...-.
T Consensus 116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~ 195 (238)
T KOG0090|consen 116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKD 195 (238)
T ss_pred EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 99764 344555555566655544 2368999999999997653210 11122222211111
Q ss_pred -----------------ccCcEEEeCcccCCCchHHHHHHHHH
Q 010548 149 -----------------EIETCVECSATTMIQVPDVFYYAQKA 174 (507)
Q Consensus 149 -----------------~~~~~~~~SA~~g~gi~~l~~~i~~~ 174 (507)
....+.++|++++ +++++-+||.+.
T Consensus 196 ~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 196 FTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 1125788899888 899988888654
No 403
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.23 E-value=3.7e-11 Score=109.50 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=64.2
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+||+++|++|||||||+++++++++.. +.++.+..+. .+.. +..++.+|||+|++++...+ ..++++||+++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~vi 87 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSSW--NTYYTNTDAVI 87 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHHH--HHHhhcCCEEE
Confidence 4799999999999999999999988875 4566665443 2333 36789999999999998877 67899999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 88 ~V~D~ 92 (174)
T cd04153 88 LVIDS 92 (174)
T ss_pred EEEEC
Confidence 99996
No 404
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.23 E-value=3.2e-11 Score=109.33 Aligned_cols=76 Identities=24% Similarity=0.321 Sum_probs=62.6
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv 504 (507)
||+++|.+|||||||+++|.+..+.. +.+|.+.++. .+.. ...++.+|||+|++++...+ ..+++++|++++|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~--~~~~~~ad~ii~V 73 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLW--KHYYLNTQAVVFV 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHH--HHHhccCCEEEEE
Confidence 68999999999999999999987754 5666665443 2322 56789999999999988877 6789999999999
Q ss_pred EeC
Q 010548 505 YDR 507 (507)
Q Consensus 505 ~D~ 507 (507)
||+
T Consensus 74 ~D~ 76 (169)
T cd04158 74 VDS 76 (169)
T ss_pred EeC
Confidence 995
No 405
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.23 E-value=3.4e-11 Score=108.93 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=63.4
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv 504 (507)
+|+++|.+|||||||+++|.++ +...+.||.+.. ...+.. +..++.+||++|+++++.++ ..++++||++++|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~--~~~~~~i~D~~G~~~~~~~~--~~~~~~a~~ii~V 73 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRL--DKYEVCIFDLGGGANFRGIW--VNYYAEAHGLVFV 73 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEE--CCEEEEEEECCCcHHHHHHH--HHHHcCCCEEEEE
Confidence 4799999999999999999977 666777777753 233443 46788999999999999888 7899999999999
Q ss_pred EeC
Q 010548 505 YDR 507 (507)
Q Consensus 505 ~D~ 507 (507)
||+
T Consensus 74 ~D~ 76 (167)
T cd04161 74 VDS 76 (167)
T ss_pred EEC
Confidence 995
No 406
>COG1159 Era GTPase [General function prediction only]
Probab=99.23 E-value=1.7e-11 Score=116.46 Aligned_cols=84 Identities=20% Similarity=0.238 Sum_probs=70.9
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh------hccchhhcc
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEALA 496 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~~~ 496 (507)
.-.|++||+||||||||+|++++.+.+++++.+.|||..+..+... +..++.++||+|..+-+. ...+...+.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 4579999999999999999999999999999999999999988888 677899999999643211 112256789
Q ss_pred cccEEEEEEeC
Q 010548 497 SCDVTIFVYDR 507 (507)
Q Consensus 497 ~ad~vilv~D~ 507 (507)
.+|++++|+|+
T Consensus 85 dvDlilfvvd~ 95 (298)
T COG1159 85 DVDLILFVVDA 95 (298)
T ss_pred cCcEEEEEEec
Confidence 99999999996
No 407
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.22 E-value=3.9e-11 Score=107.09 Aligned_cols=80 Identities=24% Similarity=0.326 Sum_probs=67.4
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv 504 (507)
||+++|++|||||||++++++..+...+.++.. ..........+...++.+||++|++.+.... ..+++.+|++++|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~i~v 77 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMR--DLYIRQGDGFILV 77 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHHhcCCEEEEE
Confidence 689999999999999999999988877777766 3444555666556788999999999988877 6788999999999
Q ss_pred EeC
Q 010548 505 YDR 507 (507)
Q Consensus 505 ~D~ 507 (507)
||+
T Consensus 78 ~d~ 80 (160)
T cd00876 78 YSI 80 (160)
T ss_pred EEC
Confidence 995
No 408
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.21 E-value=3.8e-11 Score=107.70 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=57.5
Q ss_pred EEEEecCCCCchHHHHHHHhcCC---CCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERP---FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
-|+++|++|||||||+++|++.. +...+.++.+.......+... ...++.+|||+|+++|.... ..+++.||++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~--~~~~~~ad~i 78 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP-SGKRLGFIDVPGHEKFIKNM--LAGAGGIDLV 78 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec-CCcEEEEEECCChHHHHHHH--HhhhhcCCEE
Confidence 58999999999999999999753 222222333333333334443 24578899999999887554 5678899999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 79 i~V~d~ 84 (164)
T cd04171 79 LLVVAA 84 (164)
T ss_pred EEEEEC
Confidence 999995
No 409
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.21 E-value=5.2e-11 Score=108.97 Aligned_cols=81 Identities=21% Similarity=0.347 Sum_probs=67.5
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
.||+++|.+|||||||+++|.+..+...+.++.+..+ ...+...+....+.+|||+|++++..++ ..++..++++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~i~ 78 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILP--QKYSIGIHGYIL 78 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHH--HHHHhhCCEEEE
Confidence 5899999999999999999999988777777665444 4455666566678899999999988776 678899999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~d~ 82 (180)
T cd04137 79 VYSV 82 (180)
T ss_pred EEEC
Confidence 9985
No 410
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.21 E-value=4.8e-11 Score=106.81 Aligned_cols=77 Identities=25% Similarity=0.341 Sum_probs=62.8
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv 504 (507)
||+++|++|||||||+++|.++++... .+|.+.. ...+..+ +...+.+|||+|++++...+ ..+++.+|++++|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~--~~~~~~~-~~~~l~i~D~~G~~~~~~~~--~~~~~~~~~iv~v 74 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFN--VEMLQLE-KHLSLTVWDVGGQEKMRTVW--KCYLENTDGLVYV 74 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcc--eEEEEeC-CceEEEEEECCCCHhHHHHH--HHHhccCCEEEEE
Confidence 589999999999999999999988643 4555533 3344444 56789999999999988877 6789999999999
Q ss_pred EeC
Q 010548 505 YDR 507 (507)
Q Consensus 505 ~D~ 507 (507)
||+
T Consensus 75 ~D~ 77 (160)
T cd04156 75 VDS 77 (160)
T ss_pred EEC
Confidence 995
No 411
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.20 E-value=2e-12 Score=112.06 Aligned_cols=84 Identities=14% Similarity=0.356 Sum_probs=77.9
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...||++|+|..+|||||+++||+.+-|...|..++++++..+.+.+.++.+.+.+|||+|++.|..+. ..|||+|.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaIt--kAyyrgaqa 95 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAIT--KAYYRGAQA 95 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHH--HHHhccccc
Confidence 356999999999999999999999999999999999999988888888888888999999999999987 689999999
Q ss_pred EEEEEe
Q 010548 501 TIFVYD 506 (507)
Q Consensus 501 vilv~D 506 (507)
.+|||.
T Consensus 96 ~vLVFS 101 (246)
T KOG4252|consen 96 SVLVFS 101 (246)
T ss_pred eEEEEe
Confidence 999985
No 412
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.20 E-value=4.2e-11 Score=107.16 Aligned_cols=76 Identities=24% Similarity=0.291 Sum_probs=61.4
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv 504 (507)
||+++|++|||||||++++..+.+.. +.+|.+.+.. .+.. ...++.+|||+|++++..++ ..+++.+|++++|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~ii~v 73 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYW--RCYYSNTDAIIYV 73 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHH--HHHhcCCCEEEEE
Confidence 68999999999999999998887753 4455554432 2322 45788999999999998887 6789999999999
Q ss_pred EeC
Q 010548 505 YDR 507 (507)
Q Consensus 505 ~D~ 507 (507)
||+
T Consensus 74 ~d~ 76 (158)
T cd04151 74 VDS 76 (158)
T ss_pred EEC
Confidence 995
No 413
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.18 E-value=1.8e-11 Score=110.79 Aligned_cols=83 Identities=23% Similarity=0.429 Sum_probs=73.6
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEc-CCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ-PGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
..+||+|||+.+||||+|+..|..+.|...|.||.-..|+.. +.+ .|+.+.+-+||||||+.|..++ +-.|.++|+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~-v~V~dg~~v~L~LwDTAGqedYDrlR--plsY~~tdv 79 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN-VTVDDGKPVELGLWDTAGQEDYDRLR--PLSYPQTDV 79 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-EEecCCCEEEEeeeecCCCccccccc--ccCCCCCCE
Confidence 358999999999999999999999999999999998767554 566 4789999999999999999877 568999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
++++|++
T Consensus 80 fl~cfsv 86 (198)
T KOG0393|consen 80 FLLCFSV 86 (198)
T ss_pred EEEEEEc
Confidence 9999974
No 414
>PRK13768 GTPase; Provisional
Probab=99.18 E-value=2.9e-10 Score=109.71 Aligned_cols=118 Identities=18% Similarity=0.132 Sum_probs=73.7
Q ss_pred eEEEEEeCCCCccch---hhhH---Hhhcc--CCEEEEEEeCCChhhHHHHHHh-HHHHHHhcCCCCcEEEEEecccCCC
Q 010548 59 VPVTIIDTSSSLENK---GKLN---EELKR--ADAVVLTYACNQQSTLSRLSSY-WLPELRRLEIKVPIIVAGCKLDLRG 129 (507)
Q Consensus 59 ~~~~i~Dt~G~~~~~---~~~~---~~~~~--ad~il~V~D~~~~~s~~~~~~~-~~~~l~~~~~~~piilv~NK~Dl~~ 129 (507)
..+.+|||||+.+.. .... ..+.. ++++++|+|++...+..+.... |+........++|+++|+||+|+..
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 368999999976532 2222 22333 8999999999766544443321 3332222223799999999999976
Q ss_pred CCCccchhhhhH------------------------HHHHHhcccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548 130 DHNATSLEEVMG------------------------PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 130 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
..+......... .....++...+++++||+++.|+++++++|.+.+.
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 533201111011 11222332337899999999999999999988763
No 415
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.18 E-value=9.9e-11 Score=103.99 Aligned_cols=76 Identities=25% Similarity=0.347 Sum_probs=65.0
Q ss_pred EEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEEE
Q 010548 426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVY 505 (507)
Q Consensus 426 v~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~ 505 (507)
|+++|++|||||||++++.+.++...+.++.+..+. .+.. +...+.+||++|++++...+ ..+++.+|++++|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~--~~~~~~~d~ii~v~ 75 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTK--GNVTLKVWDLGGQPRFRSMW--ERYCRGVNAIVYVV 75 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHH--HHHHhcCCEEEEEE
Confidence 799999999999999999999998888888776553 2333 34789999999999998877 68899999999999
Q ss_pred eC
Q 010548 506 DR 507 (507)
Q Consensus 506 D~ 507 (507)
|+
T Consensus 76 d~ 77 (159)
T cd04159 76 DA 77 (159)
T ss_pred EC
Confidence 95
No 416
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.17 E-value=1.6e-10 Score=127.49 Aligned_cols=117 Identities=11% Similarity=0.110 Sum_probs=82.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCC-----------CCCC--CCCCeeeC-------CcccCCceEEEEEeCCCC
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPE-----------KVPP--VHAPTRLP-------PDFYPDRVPVTIIDTSSS 69 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~-----------~~~~--~~~~~t~~-------~~~~~~~~~~~i~Dt~G~ 69 (507)
....+|+|+|+.++|||||+++|+...-.. ...+ ...+.|+. ..+.+.++.+++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 345799999999999999999998532100 0000 00112211 124567899999999999
Q ss_pred ccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548 70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (507)
Q Consensus 70 ~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 130 (507)
.++......+++.+|++|+|+|+..+...+... .+..+.+. ++|+++++||+|....
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~--~~~~~~~~--~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTET--VLRQALKE--NVKPVLFINKVDRLIN 153 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHH--HHHHHHHc--CCCEEEEEEChhcccc
Confidence 988888889999999999999998864433322 33334344 6788999999998653
No 417
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.17 E-value=5.1e-11 Score=110.56 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=62.8
Q ss_pred EEEEecCCCCchHHHHHHHhc--CCCCCCC------------CCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhcc
Q 010548 425 RCLLFGPQNAGKSALLNSFLE--RPFSENY------------APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS 490 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 490 (507)
+|+++|.+|||||||+++|++ +.+...+ ..+.++.+..+...+.++..++.+|||+|+++|....
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~- 82 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV- 82 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH-
Confidence 799999999999999999997 4554332 1223444444444445567889999999999998877
Q ss_pred chhhcccccEEEEEEeC
Q 010548 491 NKEALASCDVTIFVYDR 507 (507)
Q Consensus 491 ~~~~~~~ad~vilv~D~ 507 (507)
..+++++|++++|||+
T Consensus 83 -~~~~~~~d~~ilV~d~ 98 (194)
T cd01891 83 -ERVLSMVDGVLLLVDA 98 (194)
T ss_pred -HHHHHhcCEEEEEEEC
Confidence 6899999999999996
No 418
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.16 E-value=5.3e-11 Score=109.96 Aligned_cols=82 Identities=26% Similarity=0.378 Sum_probs=74.3
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+||+++|.+|||||+|+.+|+++.|...|+||+...| .+.+.++++...+.|+||+|++.|..+. ..+++++|+++
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y-~k~~~v~~~~~~l~ilDt~g~~~~~~~~--~~~~~~~~gF~ 79 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSY-RKELTVDGEVCMLEILDTAGQEEFSAMR--DLYIRNGDGFL 79 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCccccc-eEEEEECCEEEEEEEEcCCCcccChHHH--HHhhccCcEEE
Confidence 47999999999999999999999999999999999655 5567777788899999999999999887 68999999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+||++
T Consensus 80 lVysi 84 (196)
T KOG0395|consen 80 LVYSI 84 (196)
T ss_pred EEEEC
Confidence 99985
No 419
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.16 E-value=3.1e-10 Score=126.93 Aligned_cols=147 Identities=21% Similarity=0.219 Sum_probs=92.2
Q ss_pred CCHHHHHHHHhcCCCCCCC----CCCCCCeeeCCccc--------------CCceEEEEEeCCCCccchhhhHHhhccCC
Q 010548 23 TGKSSLIAAAATESVPEKV----PPVHAPTRLPPDFY--------------PDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (507)
Q Consensus 23 vGKSSLin~l~~~~~~~~~----~~~~~~~t~~~~~~--------------~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (507)
|+||||+.++.+.+..... ......+.++.... ...-.+.+|||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 4599999999987653321 11111121221110 01123899999999988887778889999
Q ss_pred EEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccc-----------hhhhhHHH----------
Q 010548 85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS-----------LEEVMGPI---------- 143 (507)
Q Consensus 85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~-----------~~~~~~~~---------- 143 (507)
++++|+|++++.+.+... .+..++.. ++|+++|+||+|+........ .+....++
T Consensus 552 ivlLVVDa~~Gi~~qT~e--~I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~ 627 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIE--AINILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGK 627 (1049)
T ss_pred EEEEEEECcccCCHhHHH--HHHHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence 999999999743333222 33445554 789999999999964211000 01111111
Q ss_pred -H------------HHhcccCcEEEeCcccCCCchHHHHHHHH
Q 010548 144 -M------------QQFREIETCVECSATTMIQVPDVFYYAQK 173 (507)
Q Consensus 144 -~------------~~~~~~~~~~~~SA~~g~gi~~l~~~i~~ 173 (507)
+ ..++...+++++||++|+||++|...|..
T Consensus 628 L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 628 LYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 0 12333448999999999999999987754
No 420
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.16 E-value=1.3e-10 Score=103.90 Aligned_cols=76 Identities=22% Similarity=0.303 Sum_probs=61.0
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv 504 (507)
||+++|.+|||||||++++++++.. .+.++.+... ..+.. ....+.+||++|++++...+ ..+++.+|++++|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~~i~v 73 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLW--KHYYENTNGIIFV 73 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEE--CCEEEEEEECCCChhhHHHH--HHHhccCCEEEEE
Confidence 6899999999999999999999843 3445555333 23333 35788999999999998887 6788999999999
Q ss_pred EeC
Q 010548 505 YDR 507 (507)
Q Consensus 505 ~D~ 507 (507)
||+
T Consensus 74 ~D~ 76 (158)
T cd00878 74 VDS 76 (158)
T ss_pred EEC
Confidence 996
No 421
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.16 E-value=4.2e-10 Score=109.48 Aligned_cols=120 Identities=14% Similarity=0.123 Sum_probs=74.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhH---Hhh---
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN---EEL--- 80 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---~~~--- 80 (507)
....++|+++|.+||||||++|+|++..... ...+..... ........+.++.+|||||..+...... ..+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~-~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRP-MMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeE-EEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 3567899999999999999999999876322 121111111 1112224578999999999875432211 122
Q ss_pred ---ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCC---CCcEEEEEecccCCCC
Q 010548 81 ---KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGD 130 (507)
Q Consensus 81 ---~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~ 130 (507)
...|++|+|..++.. .+...+..+++.++.... -.++|+|.|++|....
T Consensus 114 l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred hhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 268999999665432 122222225555554321 3679999999997643
No 422
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.15 E-value=1.7e-10 Score=106.17 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=62.2
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+||+++|.+|||||||++++.++.+.. +.||.+.. ...+.. +..++.+||++|++++...+ ..+++++|+++
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~G~~~~~~~~--~~~~~~ad~ii 89 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAI--GNIKFTTFDLGGHQQARRLW--KDYFPEVNGIV 89 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEE--CCEEEEEEECCCCHHHHHHH--HHHhCCCCEEE
Confidence 4899999999999999999999987753 34444322 223333 35788899999999988888 68999999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|+|+
T Consensus 90 ~vvD~ 94 (184)
T smart00178 90 YLVDA 94 (184)
T ss_pred EEEEC
Confidence 99995
No 423
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.15 E-value=9.8e-11 Score=114.44 Aligned_cols=82 Identities=20% Similarity=0.331 Sum_probs=64.7
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh-h----hc-cchhhcccc
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-K----IL-SNKEALASC 498 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~----~~-~~~~~~~~a 498 (507)
+|+++|+||||||||+|+|++.+...+++.+++|+..+..+... +..++.+|||+|..... . +. ....+++.|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999999888888888888777666655 34568999999974321 1 11 124577899
Q ss_pred cEEEEEEeC
Q 010548 499 DVTIFVYDR 507 (507)
Q Consensus 499 d~vilv~D~ 507 (507)
|++++|+|+
T Consensus 81 Dvvl~VvD~ 89 (270)
T TIGR00436 81 DLILFVVDS 89 (270)
T ss_pred CEEEEEEEC
Confidence 999999996
No 424
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=2.5e-10 Score=112.79 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=101.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCC---------------C---------C----CCCCeeeC---CcccCC
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV---------------P---------P----VHAPTRLP---PDFYPD 57 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~---------------~---------~----~~~~~t~~---~~~~~~ 57 (507)
..+.++++++|+..+|||||+-+|+.+.-..+. . . -..+.|+. ..+..+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 456799999999999999999999754311100 0 0 11122211 223355
Q ss_pred ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhh-----HHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC
Q 010548 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQST-----LSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132 (507)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s-----~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~ 132 (507)
.+.++|+|+||+..|...+-.-...||+.|+|+|+++.+. ........+-..+-.+ -..+|+++||+|+.+-++
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wde 162 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccCH
Confidence 7789999999988887777778899999999999988731 1111111111222222 356899999999987544
Q ss_pred ccchhhh---hHHHHHHhccc---CcEEEeCcccCCCchHH
Q 010548 133 ATSLEEV---MGPIMQQFREI---ETCVECSATTMIQVPDV 167 (507)
Q Consensus 133 ~~~~~~~---~~~~~~~~~~~---~~~~~~SA~~g~gi~~l 167 (507)
. ..++. +..+.+.++.. .+|++|||..|.|+.+-
T Consensus 163 ~-rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 163 E-RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred H-HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 3 33332 33344555543 26999999999998763
No 425
>PRK15494 era GTPase Era; Provisional
Probab=99.13 E-value=1.5e-10 Score=116.43 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=62.1
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEE-EEEcCCCeEEEEEEecCCchh-hhhhc-----cchh
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVN-VVDQPGGNKKTLILQEIPEEG-VKKIL-----SNKE 493 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~-~~~~~-----~~~~ 493 (507)
.+.++|+++|+||||||||+|+|+++++..+++.+++|+.... .+.. +..++.+|||+|... +..+. ....
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~--~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL--KDTQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe--CCeEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 4568999999999999999999999998876666666554433 3333 345789999999843 22211 1124
Q ss_pred hcccccEEEEEEeC
Q 010548 494 ALASCDVTIFVYDR 507 (507)
Q Consensus 494 ~~~~ad~vilv~D~ 507 (507)
++++||++++|+|+
T Consensus 128 ~l~~aDvil~VvD~ 141 (339)
T PRK15494 128 SLHSADLVLLIIDS 141 (339)
T ss_pred HhhhCCEEEEEEEC
Confidence 57899999999985
No 426
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.13 E-value=1.9e-10 Score=103.68 Aligned_cols=77 Identities=23% Similarity=0.407 Sum_probs=58.9
Q ss_pred EEEEecCCCCchHHHHHHHhcCCC------CCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPF------SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a 498 (507)
+|+++|++|||||||++++.+... ...+.+|.+..+. .+.. +..++.+|||+|++.+..++ ..+++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~--~~~~~~~ 74 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV--GNARLKFWDLGGQESLRSLW--DKYYAEC 74 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE--CCEEEEEEECCCChhhHHHH--HHHhCCC
Confidence 589999999999999999986432 2233445554442 3333 35788999999999998877 6789999
Q ss_pred cEEEEEEeC
Q 010548 499 DVTIFVYDR 507 (507)
Q Consensus 499 d~vilv~D~ 507 (507)
|++++|||+
T Consensus 75 ~~~v~vvd~ 83 (167)
T cd04160 75 HAIIYVIDS 83 (167)
T ss_pred CEEEEEEEC
Confidence 999999995
No 427
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.12 E-value=2.5e-10 Score=105.28 Aligned_cols=81 Identities=21% Similarity=0.331 Sum_probs=66.4
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
.||+++|++|||||||++++..+.+...+.++....+ ...+...+....+.+|||+|++.+.... ..+++.+|++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~--~~~~~~a~~~ll 78 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLR--PLSYSKAHVILI 78 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccc--hhhcCCCCEEEE
Confidence 4899999999999999999998888777767665544 3455666666788999999999887655 467899999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 79 v~~i 82 (187)
T cd04129 79 GFAV 82 (187)
T ss_pred EEEC
Confidence 9985
No 428
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.12 E-value=7.5e-10 Score=109.88 Aligned_cols=106 Identities=11% Similarity=0.080 Sum_probs=69.1
Q ss_pred CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccch
Q 010548 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL 136 (507)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~ 136 (507)
.++.+.|+||+|....... ....||.+++|.+...++....+.. .+- ...-++|+||+|+......
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~----gi~----E~aDIiVVNKaDl~~~~~a--- 212 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK----GIM----ELADLIVINKADGDNKTAA--- 212 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh----hhh----hhhheEEeehhcccchhHH---
Confidence 4688999999997643322 5678999999987555544433221 111 2234899999998764321
Q ss_pred hhhhHHHHHHhc--------ccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548 137 EEVMGPIMQQFR--------EIETCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 137 ~~~~~~~~~~~~--------~~~~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
......+...+. ...+++.+||+++.||+++++.|.+.+.
T Consensus 213 ~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 213 RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 111222222221 1137899999999999999999998754
No 429
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.12 E-value=1.6e-10 Score=105.48 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=59.4
Q ss_pred EEEEecCCCCchHHHHHHHhcCCC-------CCCCCC------CccceeEEEEEEc-----CCCeEEEEEEecCCchhhh
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPF-------SENYAP------TTGEQYAVNVVDQ-----PGGNKKTLILQEIPEEGVK 486 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~-------~~~~~~------t~~~~~~~~~~~~-----~~~~~~~~i~Dt~G~~~~~ 486 (507)
+|+++|.+|||||||+++|++... ...+.+ +.++.+..+.+.. +++..++.+|||+|++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 589999999999999999997531 112222 1233333332222 4567788999999999998
Q ss_pred hhccchhhcccccEEEEEEeC
Q 010548 487 KILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 487 ~~~~~~~~~~~ad~vilv~D~ 507 (507)
... ..+++.+|++++|||+
T Consensus 82 ~~~--~~~~~~ad~~i~v~D~ 100 (179)
T cd01890 82 YEV--SRSLAACEGALLLVDA 100 (179)
T ss_pred HHH--HHHHHhcCeEEEEEEC
Confidence 877 6789999999999995
No 430
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1e-09 Score=105.06 Aligned_cols=165 Identities=13% Similarity=0.196 Sum_probs=109.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC----CCCCCCCCCCCeeeCCccc------------CCceEEEEEeCCCCccch
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATES----VPEKVPPVHAPTRLPPDFY------------PDRVPVTIIDTSSSLENK 73 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~----~~~~~~~~~~~~t~~~~~~------------~~~~~~~i~Dt~G~~~~~ 73 (507)
+..+++.++|+-.+|||||.++|..-. |.....+...+.|...-+. .+...+.++|+||+ .
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH---a 81 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH---A 81 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc---H
Confidence 345999999999999999999997533 3344444555555333322 34578899999994 4
Q ss_pred hhhHHhh---ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc-cchhhhhHHHHHHh--
Q 010548 74 GKLNEEL---KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-TSLEEVMGPIMQQF-- 147 (507)
Q Consensus 74 ~~~~~~~---~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~-- 147 (507)
++++..+ .-.|..++|+|+..+..-+..+-.++..+- -+..++|+||+|+..+.+. ...++....+.+.+
T Consensus 82 sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~ 157 (522)
T KOG0461|consen 82 SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES 157 (522)
T ss_pred HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence 4555554 445888999999887555554433333332 2456888899887655222 02333334444333
Q ss_pred ---cccCcEEEeCcccC----CCchHHHHHHHHHHcCCCCC
Q 010548 148 ---REIETCVECSATTM----IQVPDVFYYAQKAVLHPTAP 181 (507)
Q Consensus 148 ---~~~~~~~~~SA~~g----~gi~~l~~~i~~~i~~~~~~ 181 (507)
+...|++++||+.| ++|.+|.+.|...+..|.+.
T Consensus 158 t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd 198 (522)
T KOG0461|consen 158 TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD 198 (522)
T ss_pred cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence 33348999999999 89999999999988777643
No 431
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.11 E-value=2.6e-10 Score=98.01 Aligned_cols=79 Identities=22% Similarity=0.364 Sum_probs=67.7
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..++|.++|..|+||||++++|.+..- ....||.+ |.++++.. +..++.+||..||...++.| ..||..+|++
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~g--f~Iktl~~--~~~~L~iwDvGGq~~lr~~W--~nYfestdgl 87 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLG--FQIKTLEY--KGYTLNIWDVGGQKTLRSYW--KNYFESTDGL 87 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCc-cccCCccc--eeeEEEEe--cceEEEEEEcCCcchhHHHH--HHhhhccCeE
Confidence 479999999999999999999999883 34446665 66666666 47789999999999999999 7899999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
|+|+|.
T Consensus 88 IwvvDs 93 (185)
T KOG0073|consen 88 IWVVDS 93 (185)
T ss_pred EEEEEC
Confidence 999995
No 432
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.11 E-value=1.9e-10 Score=119.40 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=63.6
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEE-EEEEcCCCeEEEEEEecCCchhhhhhc------cchhh
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAV-NVVDQPGGNKKTLILQEIPEEGVKKIL------SNKEA 494 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~------~~~~~ 494 (507)
..+||+++|+||||||||+|+|++.++..++..++++++.. ..+.++ +..+.+|||+|.+.+.... .+..+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~--g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN--GILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC--CEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 45899999999999999999999988766666666655443 344454 4567899999986543221 23568
Q ss_pred cccccEEEEEEeC
Q 010548 495 LASCDVTIFVYDR 507 (507)
Q Consensus 495 ~~~ad~vilv~D~ 507 (507)
++.||++++|||+
T Consensus 280 ~~~aD~il~V~D~ 292 (442)
T TIGR00450 280 IKQADLVIYVLDA 292 (442)
T ss_pred HhhCCEEEEEEEC
Confidence 8999999999995
No 433
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.10 E-value=1.8e-10 Score=116.16 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=61.1
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCc---------hhhhhhccch
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE---------EGVKKILSNK 492 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------~~~~~~~~~~ 492 (507)
..++|+++|.||||||||+|+|++.+......+..|.+.....+.++ ++..+.+|||+|. +.|.+ +.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~-~~~~i~l~DT~G~~~~l~~~lie~f~~---tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP-DGGEVLLTDTVGFIRDLPHELVAAFRA---TL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC-CCceEEEEecCcccccCCHHHHHHHHH---HH
Confidence 45899999999999999999999987543333344445555666665 3457889999997 22332 34
Q ss_pred hhcccccEEEEEEeC
Q 010548 493 EALASCDVTIFVYDR 507 (507)
Q Consensus 493 ~~~~~ad~vilv~D~ 507 (507)
..+++||++++|||+
T Consensus 264 e~~~~ADlil~VvD~ 278 (351)
T TIGR03156 264 EEVREADLLLHVVDA 278 (351)
T ss_pred HHHHhCCEEEEEEEC
Confidence 578899999999996
No 434
>PTZ00258 GTP-binding protein; Provisional
Probab=99.10 E-value=1e-09 Score=110.85 Aligned_cols=84 Identities=17% Similarity=0.246 Sum_probs=54.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCC--CCeeeCCccc------------C---CceEEEEEeCCCCc
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVH--APTRLPPDFY------------P---DRVPVTIIDTSSSL 70 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~--~~~t~~~~~~------------~---~~~~~~i~Dt~G~~ 70 (507)
....++|+|||.||||||||+|+|++...... +|.+. +.... ..+. . ...++.++||||..
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~-v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTAR-VNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEE-EecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 34578999999999999999999987663221 33211 11110 1111 0 13458999999975
Q ss_pred cchh-------hhHHhhccCCEEEEEEeCC
Q 010548 71 ENKG-------KLNEELKRADAVVLTYACN 93 (507)
Q Consensus 71 ~~~~-------~~~~~~~~ad~il~V~D~~ 93 (507)
.... .....++.+|++++|+|+.
T Consensus 97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 3221 2235678999999999974
No 435
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.09 E-value=9.5e-10 Score=105.48 Aligned_cols=119 Identities=21% Similarity=0.126 Sum_probs=75.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccch--h-h-------h
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENK--G-K-------L 76 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~--~-~-------~ 76 (507)
....++|+++|.+|||||||+|+|++....... ...+.++ ........+.++.+|||||..+.. . . .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 455799999999999999999999997642221 1111122 112223457889999999987552 1 1 1
Q ss_pred HHhhc--cCCEEEEEEeCCCh-hhHHHHHHhHHHHHHhcCC---CCcEEEEEecccCCCC
Q 010548 77 NEELK--RADAVVLTYACNQQ-STLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGD 130 (507)
Q Consensus 77 ~~~~~--~ad~il~V~D~~~~-~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~ 130 (507)
..++. ..|++++|..++.. .+..+. .+++.++.... -.++++|.||+|....
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~--~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDL--PLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHH--HHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 12332 57889988766542 223322 25555555321 2679999999998654
No 436
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.09 E-value=4.6e-10 Score=103.63 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=62.4
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+||+++|++|||||||++++.++++. .+.+|.+.. ...+... ...+.+||++|++++...+ ..+++++|+++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~--~~~~~l~D~~G~~~~~~~~--~~~~~~ad~ii 91 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIG--NIKFKTFDLGGHEQARRLW--KDYFPEVDGIV 91 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEEC--CEEEEEEECCCCHHHHHHH--HHHhccCCEEE
Confidence 479999999999999999999998874 455555432 2334443 4678899999999888777 67889999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|+|+
T Consensus 92 lV~D~ 96 (190)
T cd00879 92 FLVDA 96 (190)
T ss_pred EEEEC
Confidence 99995
No 437
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.08 E-value=1.6e-09 Score=107.76 Aligned_cols=164 Identities=16% Similarity=0.173 Sum_probs=115.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC--CCCC--CC---------CCCCCee---eCCcccCCceEEEEEeCCCCccchh
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATES--VPEK--VP---------PVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKG 74 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~--~~~~--~~---------~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~ 74 (507)
+..+|+|+-+-.-|||||+..|+.+. |... .. ....++| ....+.+++++++|+||||+-.|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 34579999999999999999999754 2111 00 1122344 3345568899999999999999999
Q ss_pred hhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc----
Q 010548 75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI---- 150 (507)
Q Consensus 75 ~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~---- 150 (507)
..+..+.-.|.+++++|+..+.-.+. .+..+..-.. +.+.|+|+||+|.+..+.. ..-++...+...++..
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQT--rFVlkKAl~~--gL~PIVVvNKiDrp~Arp~-~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQT--RFVLKKALAL--GLKPIVVINKIDRPDARPD-EVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCch--hhhHHHHHHc--CCCcEEEEeCCCCCCCCHH-HHHHHHHHHHHHhCCChhhC
Confidence 99999999999999999998744332 2233333333 6777899999999887654 2222333333333321
Q ss_pred -CcEEEeCcccCC----------CchHHHHHHHHHHcCCC
Q 010548 151 -ETCVECSATTMI----------QVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 151 -~~~~~~SA~~g~----------gi~~l~~~i~~~i~~~~ 179 (507)
.|++..||+.|. ++.-||+.|.+.+..|.
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 278999999874 57889999999886665
No 438
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.08 E-value=1.6e-10 Score=101.39 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=50.0
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCc-----hhhhhhccchhhccccc
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE-----EGVKKILSNKEALASCD 499 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----~~~~~~~~~~~~~~~ad 499 (507)
||+++|++|||||||+|+|+++.+. +.+|.+.++ . . .+|||+|+ +.+..+. ..+++||
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~-~----~~iDt~G~~~~~~~~~~~~~---~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------N-D----GAIDTPGEYVENRRLYSALI---VTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------c-C----eeecCchhhhhhHHHHHHHH---HHhhcCC
Confidence 8999999999999999999988763 444443332 1 1 46999997 3455443 3589999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 65 ~vilv~d~ 72 (142)
T TIGR02528 65 VIALVQSA 72 (142)
T ss_pred EEEEEecC
Confidence 99999996
No 439
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.08 E-value=1.1e-09 Score=121.08 Aligned_cols=116 Identities=11% Similarity=0.084 Sum_probs=80.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--C-----------CCCCeeeCC-----c--ccCCceEEEEEeCCCC
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP--P-----------VHAPTRLPP-----D--FYPDRVPVTIIDTSSS 69 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~--~-----------~~~~~t~~~-----~--~~~~~~~~~i~Dt~G~ 69 (507)
.+..+|+|+|+.++|||||+.+|+...-..... . ...+.|+.. . +..+++.++++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 345679999999999999999998643211100 0 000111111 1 1234788999999999
Q ss_pred ccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCC
Q 010548 70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129 (507)
Q Consensus 70 ~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 129 (507)
.++.......++.+|++|+|+|+..+....... .+..+.+. ++|+|+++||+|+..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~--~~~~~~~~--~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTET--VLRQALRE--RVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHH--HHHHHHHc--CCCeEEEEECchhhc
Confidence 998888889999999999999998874443322 33333444 578899999999764
No 440
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.08 E-value=3.6e-10 Score=101.89 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=61.9
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC-CCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
.|+++|.+|||||||+++|.+.++...+.++.+.......+... +....+.+|||+|++.+...+ ..+++.+|++++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~--~~~~~~~d~il~ 79 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMR--ARGASLTDIAIL 79 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHH--HHHHhhcCEEEE
Confidence 48999999999999999999988776544444433333333332 145678899999999888776 567899999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|+|+
T Consensus 80 v~d~ 83 (168)
T cd01887 80 VVAA 83 (168)
T ss_pred EEEC
Confidence 9995
No 441
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.08 E-value=1.6e-09 Score=100.52 Aligned_cols=106 Identities=16% Similarity=0.107 Sum_probs=66.2
Q ss_pred ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchh
Q 010548 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE 137 (507)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~ 137 (507)
+....+++|.|..-..... ..+ +|.+|.|+|+.+..+... .....+. ..=++++||+|+.+.... ..
T Consensus 91 ~~D~iiIEt~G~~l~~~~~-~~l--~~~~i~vvD~~~~~~~~~---~~~~qi~-----~ad~~~~~k~d~~~~~~~--~~ 157 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFS-PEL--ADLTIFVIDVAAGDKIPR---KGGPGIT-----RSDLLVINKIDLAPMVGA--DL 157 (199)
T ss_pred CCCEEEEECCCCCcccccc-hhh--hCcEEEEEEcchhhhhhh---hhHhHhh-----hccEEEEEhhhccccccc--cH
Confidence 4567788998843222221 122 688999999988765322 1112221 223899999999853111 11
Q ss_pred hhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548 138 EVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
+......+.+....+++++||++|+|+++++++|.+.++
T Consensus 158 ~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 158 GVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 223334444444458999999999999999999987653
No 442
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.07 E-value=5.7e-10 Score=98.67 Aligned_cols=82 Identities=27% Similarity=0.466 Sum_probs=67.1
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|.+|+|||||++++++..+...+.++.+..+....+..++....+.+||++|+.++...+ ..+++.++.++.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--~~~~~~~~~~i~ 79 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIR--RLYYRAVESSLR 79 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHH--HHHHhhhhEEEE
Confidence 799999999999999999999999766676777766666556666445778899999998888776 567788888888
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
++|.
T Consensus 80 ~~d~ 83 (161)
T TIGR00231 80 VFDI 83 (161)
T ss_pred EEEE
Confidence 8873
No 443
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.07 E-value=7.6e-10 Score=111.58 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=46.4
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCc
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 482 (507)
.+-|.+||-|||||||.||.+.|.+...++.++|-|.. ..++.+. .. +.+.|++|.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKH-FQTi~ls-~~--v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKH-FQTIFLS-PS--VCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcce-eEEEEcC-CC--ceecCCCCc
Confidence 58899999999999999999999999999998888776 4455554 33 456899986
No 444
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.05 E-value=2.8e-09 Score=106.03 Aligned_cols=156 Identities=15% Similarity=0.183 Sum_probs=101.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC----CCC---------CCCCCCCCC---eeeCCcc--------c---CCceEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATE----SVP---------EKVPPVHAP---TRLPPDF--------Y---PDRVPVTI 63 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~----~~~---------~~~~~~~~~---~t~~~~~--------~---~~~~~~~i 63 (507)
..+.|.|+|+.++|||||+|+|.+. +.. ...+...++ +|....+ . .-..++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3588999999999999999999998 321 014444555 2211112 1 22478999
Q ss_pred EeCCCCccch-------hh----------------------hHHhhc-cCCEEEEEE-eCC----ChhhHHHHHHhHHHH
Q 010548 64 IDTSSSLENK-------GK----------------------LNEELK-RADAVVLTY-ACN----QQSTLSRLSSYWLPE 108 (507)
Q Consensus 64 ~Dt~G~~~~~-------~~----------------------~~~~~~-~ad~il~V~-D~~----~~~s~~~~~~~~~~~ 108 (507)
+||+|..... .. .+..+. .+|+.|+|. |.+ .++.+......++..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 9999964211 01 235566 899999998 764 234466666679999
Q ss_pred HHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc--CCCchHHHHHHHHH
Q 010548 109 LRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT--MIQVPDVFYYAQKA 174 (507)
Q Consensus 109 l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~--g~gi~~l~~~i~~~ 174 (507)
+++. ++|+++|.||+|-.... .......+..+++. +++.+|+.. ...|..+++.+...
T Consensus 176 Lk~~--~kPfiivlN~~dp~~~e----t~~l~~~l~eky~v--pvl~v~c~~l~~~DI~~il~~vL~E 235 (492)
T TIGR02836 176 LKEL--NKPFIILLNSTHPYHPE----TEALRQELEEKYDV--PVLAMDVESMRESDILSVLEEVLYE 235 (492)
T ss_pred HHhc--CCCEEEEEECcCCCCch----hHHHHHHHHHHhCC--ceEEEEHHHcCHHHHHHHHHHHHhc
Confidence 9998 89999999999943221 22233455666763 667777753 34566666555443
No 445
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.05 E-value=7.7e-10 Score=104.69 Aligned_cols=89 Identities=15% Similarity=0.199 Sum_probs=71.9
Q ss_pred cccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchh------hhh----
Q 010548 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------VKK---- 487 (507)
Q Consensus 418 ~~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~---- 487 (507)
....+.++|++||.||||||||.|.+++.+...++..+.||+..+-.+... +..++.++||+|.-. +.-
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHh
Confidence 445678999999999999999999999999999999999988887777776 778899999999522 111
Q ss_pred hccchhhcccccEEEEEEeC
Q 010548 488 ILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 488 ~~~~~~~~~~ad~vilv~D~ 507 (507)
+......+..||++++|+|+
T Consensus 146 lq~~~~a~q~AD~vvVv~Da 165 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDA 165 (379)
T ss_pred hhCHHHHHhhCCEEEEEEec
Confidence 11124566789999999996
No 446
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.04 E-value=4e-10 Score=96.11 Aligned_cols=113 Identities=19% Similarity=0.139 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVP-PVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D 91 (507)
+||+++|+.|||||+|+.++....+..... + ++. +......+.+.++.+++|++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~-----t~~--------------------~~~~~~~~~~s~~~~~~v~~ 55 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVF-----TIG--------------------IDVYDPTSYESFDVVLQCWR 55 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCcee-----hhh--------------------hhhccccccCCCCEEEEEEE
Confidence 589999999999999999998777543221 1 111 22223456778999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 92 CNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
.++..+++.+ |.+.+.... .+.|.++++||.|+...... . .+... .++++|+++|.|+.
T Consensus 56 ~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~--~--------~~~~~--~~~~~s~~~~~~~~ 115 (124)
T smart00010 56 VDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQV--A--------TEEGL--EFAETSAKTPEEGE 115 (124)
T ss_pred ccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCcC--C--------HHHHH--HHHHHhCCCcchhh
Confidence 9999998764 666655432 46889999999998543322 1 11111 35679999999984
No 447
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.04 E-value=9.5e-10 Score=123.18 Aligned_cols=116 Identities=11% Similarity=0.135 Sum_probs=82.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CC-----C------CCCeeeC-----Ccc--------------cC
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV--PP-----V------HAPTRLP-----PDF--------------YP 56 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~--~~-----~------~~~~t~~-----~~~--------------~~ 56 (507)
..+..+|+|+|+.++|||||+++|+...-.... .. + ..+.|+. ..+ ..
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 345678999999999999999999865421110 00 0 0011111 111 11
Q ss_pred CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCC
Q 010548 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128 (507)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 128 (507)
.++.++++||||+.+|.......++.+|++|+|+|+..+-...... .+..+... ++|+|+++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~--~~~~~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET--VLRQALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH--HHHHHHHC--CCCEEEEEECCccc
Confidence 3678999999999999888889999999999999999875544433 44455555 79999999999987
No 448
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=4.6e-10 Score=110.95 Aligned_cols=228 Identities=14% Similarity=0.086 Sum_probs=134.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC----CCC------------------CCCCeeeCCcccCCceEEEEEeC
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK----VPP------------------VHAPTRLPPDFYPDRVPVTIIDT 66 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~----~~~------------------~~~~~t~~~~~~~~~~~~~i~Dt 66 (507)
..++...+||-+|.+|||||-.+|+---.... +.. -+.-++....++..++.+++.||
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT 88 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT 88 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence 34556899999999999999999873211010 000 00111233456678899999999
Q ss_pred CCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHH
Q 010548 67 SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ 146 (507)
Q Consensus 67 ~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 146 (507)
||++.|..-....+..+|.+|+|+|+..+-..+.++ +.+-.+-. ++||+-.+||.|....... +.+.++.+.
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K--LfeVcrlR--~iPI~TFiNKlDR~~rdP~----ELLdEiE~~ 160 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK--LFEVCRLR--DIPIFTFINKLDREGRDPL----ELLDEIEEE 160 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCccHHHHH--HHHHHhhc--CCceEEEeeccccccCChH----HHHHHHHHH
Confidence 999999998889999999999999999885555544 66655555 8999999999998765443 444555555
Q ss_pred hcccCcE--EEeCc-ccCCCchHHHHHHHHHHcCC----------CCCCCccchhccc-HHHHHHHHHHHhhccCCCCCc
Q 010548 147 FREIETC--VECSA-TTMIQVPDVFYYAQKAVLHP----------TAPLFDHDEQTLK-PRCVRALKRIFIICDHDMDGA 212 (507)
Q Consensus 147 ~~~~~~~--~~~SA-~~g~gi~~l~~~i~~~i~~~----------~~~~~~~~~~~~~-~~~~~~l~~~~~~~d~~~d~~ 212 (507)
++--+.. +++.+ +.-.|+-.+....+...... ...+.+++..... +.....+.+-..+....
T Consensus 161 L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a---- 236 (528)
T COG4108 161 LGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGA---- 236 (528)
T ss_pred hCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhh----
Confidence 5532211 23322 33344444333211111000 0011111121111 12222222222222111
Q ss_pred cChhhhHHHHhH-----hcCCCCCHHHHHHHHHHHHhhccC
Q 010548 213 LNDAELNEFQVK-----CFNAPLQPAEIVGVKRVVQEKQHD 248 (507)
Q Consensus 213 l~~~el~~~~~~-----~~~~~l~~~~~~~l~~~i~~~~~~ 248 (507)
-..-++..++.. .|++++.+-|++.+++.+-+..|+
T Consensus 237 ~~~Fd~~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~ 277 (528)
T COG4108 237 GNEFDLEAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPS 277 (528)
T ss_pred ccccCHHHHhcCCccceEehhhhhccCHHHHHHHHHhhCCC
Confidence 111112222222 899999999999999999999986
No 449
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.04 E-value=4.2e-10 Score=105.24 Aligned_cols=87 Identities=20% Similarity=0.200 Sum_probs=58.8
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhh------hhhccchh
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV------KKILSNKE 493 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~~~ 493 (507)
.++.++|+++|++|||||||+|++++..+.....+..+.......+... +...+.+|||+|.... ........
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 116 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP-DGREVLLTDTVGFIRDLPHQLVEAFRSTLE 116 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec-CCceEEEeCCCccccCCCHHHHHHHHHHHH
Confidence 3456899999999999999999999987544333333334444445554 3347889999997221 11111123
Q ss_pred hcccccEEEEEEeC
Q 010548 494 ALASCDVTIFVYDR 507 (507)
Q Consensus 494 ~~~~ad~vilv~D~ 507 (507)
.++.+|++++|+|+
T Consensus 117 ~~~~~d~ii~v~D~ 130 (204)
T cd01878 117 EVAEADLLLHVVDA 130 (204)
T ss_pred HHhcCCeEEEEEEC
Confidence 46789999999995
No 450
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.03 E-value=1.1e-09 Score=99.30 Aligned_cols=79 Identities=23% Similarity=0.358 Sum_probs=62.2
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+||+++|++|||||||++++.+..+.. +.++.+.. ...+... +..+.+||++|++++...+ ..+++.+|++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~--~~~i~~~--~~~~~~~D~~G~~~~~~~~--~~~~~~~~~i 85 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFN--IKTVQSD--GFKLNVWDIGGQRAIRPYW--RNYFENTDCL 85 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcc--eEEEEEC--CEEEEEEECCCCHHHHHHH--HHHhcCCCEE
Confidence 35899999999999999999999987653 44555532 2334443 4678899999998887776 5788999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 86 i~v~D~ 91 (173)
T cd04155 86 IYVIDS 91 (173)
T ss_pred EEEEeC
Confidence 999995
No 451
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.03 E-value=4.5e-10 Score=117.26 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=62.9
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeE-EEEEEcCCCeEEEEEEecCCchhhhhh------ccchhh
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYA-VNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKEA 494 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~~ 494 (507)
..+||+++|.||||||||+|+|++.++..+++.+++|++. ...+..+ +..+.+|||+|.+.+... .++..+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD--GIPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC--CeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3489999999999999999999998876666555555443 3344444 456889999998654321 223467
Q ss_pred cccccEEEEEEeC
Q 010548 495 LASCDVTIFVYDR 507 (507)
Q Consensus 495 ~~~ad~vilv~D~ 507 (507)
++.||++++|||+
T Consensus 292 ~~~aD~il~VvD~ 304 (449)
T PRK05291 292 IEEADLVLLVLDA 304 (449)
T ss_pred HHhCCEEEEEecC
Confidence 8999999999996
No 452
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.03 E-value=1.5e-09 Score=102.16 Aligned_cols=164 Identities=18% Similarity=0.148 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchh----h---hH----Hh
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG----K---LN----EE 79 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~----~~ 79 (507)
++|+++|..|+||||++|.+++...........+.+. ........+..+.++||||..+... . +. ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 5899999999999999999999875333211111111 1111235678999999999753221 1 11 12
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-C--CCcEEEEEecccCCCCCCccch-----hhhhHHHHHHhcccC
Q 010548 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-I--KVPIIVAGCKLDLRGDHNATSL-----EEVMGPIMQQFREIE 151 (507)
Q Consensus 80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~--~~piilv~NK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~~ 151 (507)
..+.|++|+|+... +-+-.+.. .++.+.+.. + -.-++||.+..|.......... ...+..+.+..+.
T Consensus 81 ~~g~ha~llVi~~~-r~t~~~~~--~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~-- 155 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG-RFTEEDRE--VLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG-- 155 (212)
T ss_dssp TT-ESEEEEEEETT-B-SHHHHH--HHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred cCCCeEEEEEEecC-cchHHHHH--HHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC--
Confidence 45689999999988 43333322 444444432 1 2568889998887665432000 1224455555654
Q ss_pred cEEEeCcc------cCCCchHHHHHHHHHHcCCCCC
Q 010548 152 TCVECSAT------TMIQVPDVFYYAQKAVLHPTAP 181 (507)
Q Consensus 152 ~~~~~SA~------~g~gi~~l~~~i~~~i~~~~~~ 181 (507)
.|...+.+ ....+.+|++.|-+.+......
T Consensus 156 R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~ 191 (212)
T PF04548_consen 156 RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQ 191 (212)
T ss_dssp CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence 46655555 3345777777777666544433
No 453
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.02 E-value=9.8e-10 Score=100.17 Aligned_cols=80 Identities=25% Similarity=0.395 Sum_probs=65.7
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
++.+||+++|.+|+||||+++++..++... ..||.+ +.+..+.. +...+.+||..|+..++.+| ..|++++|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~--~~~~~~~~d~gG~~~~~~~w--~~y~~~~~~ 84 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKY--KGYSLTIWDLGGQESFRPLW--KSYFQNADG 84 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEE--TTEEEEEEEESSSGGGGGGG--GGGHTTESE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeee--CcEEEEEEeccccccccccc--eeeccccce
Confidence 456899999999999999999999876543 445655 33444555 45778999999999999999 689999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+|+|+|+
T Consensus 85 iIfVvDs 91 (175)
T PF00025_consen 85 IIFVVDS 91 (175)
T ss_dssp EEEEEET
T ss_pred eEEEEec
Confidence 9999995
No 454
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.02 E-value=3.3e-09 Score=105.74 Aligned_cols=94 Identities=20% Similarity=0.118 Sum_probs=62.2
Q ss_pred eCCCCc-cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHH
Q 010548 65 DTSSSL-ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI 143 (507)
Q Consensus 65 Dt~G~~-~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 143 (507)
+.+|+. .+.......+..+|+|+-|+|+.++.+.... .+.+...++|.++|+||+|+.... ....+
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~------~l~~~v~~k~~i~vlNK~DL~~~~-------~~~~W 82 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP------ELERIVKEKPKLLVLNKADLAPKE-------VTKKW 82 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc------cHHHHHccCCcEEEEehhhcCCHH-------HHHHH
Confidence 345543 4455677889999999999999998665432 222323356779999999997642 23344
Q ss_pred HHHhccc--CcEEEeCcccCCCchHHHHHH
Q 010548 144 MQQFREI--ETCVECSATTMIQVPDVFYYA 171 (507)
Q Consensus 144 ~~~~~~~--~~~~~~SA~~g~gi~~l~~~i 171 (507)
.+.+... ...+.+|++.+.+...+...+
T Consensus 83 ~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~ 112 (322)
T COG1161 83 KKYFKKEEGIKPIFVSAKSRQGGKKIRKAL 112 (322)
T ss_pred HHHHHhcCCCccEEEEeecccCccchHHHH
Confidence 4433322 146889999888877766554
No 455
>PTZ00416 elongation factor 2; Provisional
Probab=99.02 E-value=1.1e-09 Score=122.41 Aligned_cols=115 Identities=11% Similarity=0.137 Sum_probs=81.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-------------CCCCeeeC-----Cccc--------CCceEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-------------VHAPTRLP-----PDFY--------PDRVPVTI 63 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~-------------~~~~~t~~-----~~~~--------~~~~~~~i 63 (507)
.+..+|+|+|+.++|||||+++|+...-...... ...+.|+. ..+. ..++.+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4456899999999999999999987432111000 00111111 1111 12577999
Q ss_pred EeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCC
Q 010548 64 IDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128 (507)
Q Consensus 64 ~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 128 (507)
+||||+.++.......++.+|++|+|+|+..+-...... ++..+... ++|+|+++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~--~~~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTET--VLRQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHH--HHHHHHHc--CCCEEEEEEChhhh
Confidence 999999998888889999999999999999875544332 55556555 68999999999987
No 456
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.99 E-value=6.6e-09 Score=96.90 Aligned_cols=166 Identities=22% Similarity=0.288 Sum_probs=95.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-------CCCCeeeCCccc--------------------------
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-------VHAPTRLPPDFY-------------------------- 55 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~-------~~~~~t~~~~~~-------------------------- 55 (507)
..+++-|+++|..|+||||++.||...-.....++ .......+..++
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 44567899999999999999999975332111111 000000111110
Q ss_pred -----------------CCceEEEEEeCCCCccch------hhhHHhh--ccCCEEEEEEeCCCh---hhHHHHHHhHHH
Q 010548 56 -----------------PDRVPVTIIDTSSSLENK------GKLNEEL--KRADAVVLTYACNQQ---STLSRLSSYWLP 107 (507)
Q Consensus 56 -----------------~~~~~~~i~Dt~G~~~~~------~~~~~~~--~~ad~il~V~D~~~~---~s~~~~~~~~~~ 107 (507)
.......++||||+.+-. ..+...+ ...-++++|+|.... .+|-+-.-+--.
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 134668999999986421 1222222 334578888887543 344332212223
Q ss_pred HHHhcCCCCcEEEEEecccCCCCCCcc-------chhhhhH---------------HHHHHhcccCcEEEeCcccCCCch
Q 010548 108 ELRRLEIKVPIIVAGCKLDLRGDHNAT-------SLEEVMG---------------PIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 108 ~l~~~~~~~piilv~NK~Dl~~~~~~~-------~~~~~~~---------------~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
.+.+. ..|.|+|.||+|+.+..-.. ...+.+. -...+|-.....+.|||.+|.|.+
T Consensus 176 ilykt--klp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d 253 (366)
T KOG1532|consen 176 ILYKT--KLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD 253 (366)
T ss_pred HHHhc--cCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence 34444 79999999999998752100 0011111 011112122257899999999999
Q ss_pred HHHHHHHHHHc
Q 010548 166 DVFYYAQKAVL 176 (507)
Q Consensus 166 ~l~~~i~~~i~ 176 (507)
++|..+.+.+.
T Consensus 254 df~~av~~~vd 264 (366)
T KOG1532|consen 254 DFFTAVDESVD 264 (366)
T ss_pred HHHHHHHHHHH
Confidence 99999888764
No 457
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.8e-09 Score=110.67 Aligned_cols=232 Identities=13% Similarity=0.070 Sum_probs=159.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC---------------CCCeeeC---CcccCCceEEEEEeCCCCccc
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV---------------HAPTRLP---PDFYPDRVPVTIIDTSSSLEN 72 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~---------------~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~ 72 (507)
+..+|.++-+-.+||||+-+|.+........... ..++|+. ..+.|.+++++++||||+-.|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 3456888889999999999999854321111110 0111211 123477899999999999999
Q ss_pred hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCc
Q 010548 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIET 152 (507)
Q Consensus 73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (507)
.-..+.+++--|++++|+|...+-.-+... ....++++ ++|.|..+||+|....... ..+..+..+++...-
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~t--V~rQ~~ry--~vP~i~FiNKmDRmGa~~~----~~l~~i~~kl~~~~a 189 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTET--VWRQMKRY--NVPRICFINKMDRMGASPF----RTLNQIRTKLNHKPA 189 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHH--HHHHHHhc--CCCeEEEEehhhhcCCChH----HHHHHHHhhcCCchh
Confidence 999999999999999999988774333333 55567777 8999999999998776433 455666666664334
Q ss_pred EEEeCcccCCCchHHHHHHHHHHcCCCCCCC--------ccchhcccHHHHHHHHHHHhhccCC------CCCccChhhh
Q 010548 153 CVECSATTMIQVPDVFYYAQKAVLHPTAPLF--------DHDEQTLKPRCVRALKRIFIICDHD------MDGALNDAEL 218 (507)
Q Consensus 153 ~~~~SA~~g~gi~~l~~~i~~~i~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~~~el 218 (507)
++.+......++..+.+.+...+........ .........+++++|.+.....|+. ++...+.++|
T Consensus 190 ~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l 269 (721)
T KOG0465|consen 190 VVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQL 269 (721)
T ss_pred eeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHH
Confidence 5666665555666666666554432221111 1112224456666666666666654 5667888889
Q ss_pred HHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCCc
Q 010548 219 NEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGV 250 (507)
Q Consensus 219 ~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~~ 250 (507)
..+.++ .+++++.+.+++.+++.|-+.+|+-+
T Consensus 270 ~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~ 311 (721)
T KOG0465|consen 270 KAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPS 311 (721)
T ss_pred HHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChh
Confidence 998887 78999999999999999999999743
No 458
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.99 E-value=1.6e-09 Score=101.17 Aligned_cols=80 Identities=23% Similarity=0.373 Sum_probs=60.1
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc-cEEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC-DVTIF 503 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a-d~vil 503 (507)
+|+++|++|||||||+++|.++++...+.++ ............+....+.+|||+|+++++..+ ..+++.+ +++|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~--~~~~~~~~~~vV~ 78 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKL--LETLKNSAKGIVF 78 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHH--HHHHhccCCEEEE
Confidence 5899999999999999999999876654333 211111111111345678999999999998776 6789998 99999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|+|+
T Consensus 79 VvD~ 82 (203)
T cd04105 79 VVDS 82 (203)
T ss_pred EEEC
Confidence 9996
No 459
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.99 E-value=9.8e-10 Score=104.70 Aligned_cols=114 Identities=19% Similarity=0.188 Sum_probs=59.7
Q ss_pred EEEEEeCCCCccchhhhHH------hh--ccCCEEEEEEeCCChhhHHHHHHhH-HHH--HHhcCCCCcEEEEEecccCC
Q 010548 60 PVTIIDTSSSLENKGKLNE------EL--KRADAVVLTYACNQQSTLSRLSSYW-LPE--LRRLEIKVPIIVAGCKLDLR 128 (507)
Q Consensus 60 ~~~i~Dt~G~~~~~~~~~~------~~--~~ad~il~V~D~~~~~s~~~~~~~~-~~~--l~~~~~~~piilv~NK~Dl~ 128 (507)
.+.++|||||.+....+.. .+ ...-++++++|+....+.......+ ... .-+. +.|.|.|.||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~--~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL--ELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH--TSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhC--CCCEEEeeeccCcc
Confidence 7899999999876554442 22 3456889999987544433222111 111 1223 79999999999998
Q ss_pred CCCCc--------------------cchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548 129 GDHNA--------------------TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 129 ~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i 175 (507)
..... ....+.+..+...++...+++++|+++++|+.+++..|.+++
T Consensus 170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 72100 001111222222233333789999999999999999887764
No 460
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.97 E-value=2.9e-09 Score=106.40 Aligned_cols=159 Identities=19% Similarity=0.209 Sum_probs=83.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC--CCCCC-CCCCCeeeCCccc-CCceEEEEEeCCCCccchhhhHHh-----hc
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESV--PEKVP-PVHAPTRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEE-----LK 81 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~--~~~~~-~~~~~~t~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~-----~~ 81 (507)
..++|+|+|.+|+|||||||+|.+-.. ..+.+ +..+.++....+. ++--.+.+||.||..........| +.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~ 113 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY 113 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence 358999999999999999999976332 12222 2222222222222 333469999999975433333333 56
Q ss_pred cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCC--C-----CCCccchhhhhHHH----HHHh---
Q 010548 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR--G-----DHNATSLEEVMGPI----MQQF--- 147 (507)
Q Consensus 82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~--~-----~~~~~~~~~~~~~~----~~~~--- 147 (507)
..|.+|++.+ .+-+..++. +...+++. ++|+.+|-+|+|.. + .+.. ..++....+ .+.+
T Consensus 114 ~yD~fiii~s--~rf~~ndv~--La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f-~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 114 RYDFFIIISS--ERFTENDVQ--LAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTF-NEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp G-SEEEEEES--SS--HHHHH--HHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT---HHTHHHHHHHHHHHHHHCT
T ss_pred ccCEEEEEeC--CCCchhhHH--HHHHHHHc--CCcEEEEEecccccHhhhhccCCccc-CHHHHHHHHHHHHHHHHHHc
Confidence 7899998887 443334433 77888888 89999999999951 1 1111 111112221 1111
Q ss_pred c-ccCcEEEeCcccC--CCchHHHHHHHHHHc
Q 010548 148 R-EIETCVECSATTM--IQVPDVFYYAQKAVL 176 (507)
Q Consensus 148 ~-~~~~~~~~SA~~g--~gi~~l~~~i~~~i~ 176 (507)
+ ...++|-+|+.+- ..+..|.+.+.+.+.
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 1 1126889998764 457778888877653
No 461
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.96 E-value=1.4e-09 Score=95.94 Aligned_cols=82 Identities=20% Similarity=0.199 Sum_probs=54.4
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhcc----chhhc--cc
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS----NKEAL--AS 497 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----~~~~~--~~ 497 (507)
|+|+++|.||||||||+|++++.+......|..|++.....+... ...+.++|++|.-...+... +..++ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~--~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLG--DQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEET--TEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEec--CceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 689999999999999999999999654444555555555555554 37788999999633221110 12333 58
Q ss_pred ccEEEEEEeC
Q 010548 498 CDVTIFVYDR 507 (507)
Q Consensus 498 ad~vilv~D~ 507 (507)
.|++++|+|+
T Consensus 79 ~D~ii~VvDa 88 (156)
T PF02421_consen 79 PDLIIVVVDA 88 (156)
T ss_dssp SSEEEEEEEG
T ss_pred CCEEEEECCC
Confidence 9999999996
No 462
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.96 E-value=9.3e-09 Score=99.02 Aligned_cols=91 Identities=11% Similarity=0.059 Sum_probs=60.2
Q ss_pred hhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEE
Q 010548 75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCV 154 (507)
Q Consensus 75 ~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (507)
+.+..+.+.|-+++|+.+.+++--..+.++++-..... ++..+||.||+||.+.... .. ++...+...++. +.+
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~~-~~-~~~~~~y~~~gy--~v~ 145 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEEA-AV-KELLREYEDIGY--PVL 145 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchHH-HH-HHHHHHHHhCCe--eEE
Confidence 34445556888888888888753333333355555555 7777888999999876443 11 234444444553 689
Q ss_pred EeCcccCCCchHHHHHH
Q 010548 155 ECSATTMIQVPDVFYYA 171 (507)
Q Consensus 155 ~~SA~~g~gi~~l~~~i 171 (507)
.+|++++.|++++.+.+
T Consensus 146 ~~s~~~~~~~~~l~~~l 162 (301)
T COG1162 146 FVSAKNGDGLEELAELL 162 (301)
T ss_pred EecCcCcccHHHHHHHh
Confidence 99999999988877653
No 463
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.95 E-value=3.1e-09 Score=89.86 Aligned_cols=81 Identities=22% Similarity=0.311 Sum_probs=55.7
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEE-EEEEcCCCeEEEEEEecCCchhh---h----hhccchhhcc
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAV-NVVDQPGGNKKTLILQEIPEEGV---K----KILSNKEALA 496 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~---~----~~~~~~~~~~ 496 (507)
||+++|.+|||||||+|++++.+....+..+.+++... ..+.. ....+.++||+|...- . ........++
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~--~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY--NNKKFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE--TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee--ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 68999999999999999999976655665555554442 23333 4555679999996321 0 1111234558
Q ss_pred cccEEEEEEeC
Q 010548 497 SCDVTIFVYDR 507 (507)
Q Consensus 497 ~ad~vilv~D~ 507 (507)
.+|++++|+|+
T Consensus 79 ~~d~ii~vv~~ 89 (116)
T PF01926_consen 79 KSDLIIYVVDA 89 (116)
T ss_dssp TESEEEEEEET
T ss_pred HCCEEEEEEEC
Confidence 89999999985
No 464
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.94 E-value=1.4e-08 Score=100.75 Aligned_cols=108 Identities=16% Similarity=0.088 Sum_probs=66.6
Q ss_pred CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccch
Q 010548 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL 136 (507)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~ 136 (507)
.++.+.|+||+|..... ...+..+|.++++.+...+ +++.. ....+ .++|.++|+||+|+.........
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~-~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQG-IKAGL----MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHH-HHHHH----hhhccEEEEEcccccchhHHHHH
Confidence 47889999999964322 2356778999988654433 33332 22222 25788999999999764221000
Q ss_pred hhh----hHHHHHHh-cccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548 137 EEV----MGPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 137 ~~~----~~~~~~~~-~~~~~~~~~SA~~g~gi~~l~~~i~~~i 175 (507)
... ...+.... +...++++|||+++.|+++++++|.+..
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 000 01111111 1112589999999999999999998864
No 465
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.94 E-value=2.1e-09 Score=97.17 Aligned_cols=82 Identities=20% Similarity=0.079 Sum_probs=52.0
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchh----hhhhcc-chhhccccc
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKILS-NKEALASCD 499 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----~~~~~~-~~~~~~~ad 499 (507)
.|+++|++|||||||+|++.+.+......+..+....+..+... +..++.+|||+|... ...+.. ....++.||
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 58999999999999999999876532222222223333334443 334789999999632 111210 012345699
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|+|+
T Consensus 81 ~vi~v~D~ 88 (170)
T cd01898 81 LLLHVIDL 88 (170)
T ss_pred EEEEEEec
Confidence 99999996
No 466
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.94 E-value=5.6e-09 Score=100.75 Aligned_cols=154 Identities=16% Similarity=0.104 Sum_probs=101.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCC------------CC-CCC-----------------CCCCeeeCC---cccC
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVP------------EK-VPP-----------------VHAPTRLPP---DFYP 56 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~------------~~-~~~-----------------~~~~~t~~~---~~~~ 56 (507)
...++++-+|.-.-||||||-||+...-. .. ..+ -..++|+.+ .|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 45689999999999999999999865410 00 000 011222211 2224
Q ss_pred CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc--c
Q 010548 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--T 134 (507)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~--~ 134 (507)
.+.+|.+.||||+++|...+-.-...||++|+++|+..+- ..... -...|...-.=..+++++||+||.+-.+. .
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv--l~QTr-RHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV--LEQTR-RHSFIASLLGIRHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh--HHHhH-HHHHHHHHhCCcEEEEEEeeecccccCHHHHH
Confidence 5788999999999999888888889999999999987652 22111 22222222223568999999999986443 0
Q ss_pred chhhhhHHHHHHhccc-CcEEEeCcccCCCchH
Q 010548 135 SLEEVMGPIMQQFREI-ETCVECSATTMIQVPD 166 (507)
Q Consensus 135 ~~~~~~~~~~~~~~~~-~~~~~~SA~~g~gi~~ 166 (507)
.+..+...++.+++.. ..++++||..|.||..
T Consensus 161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 1223445556665532 2689999999999754
No 467
>PRK00089 era GTPase Era; Reviewed
Probab=98.93 E-value=2.6e-09 Score=105.77 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=64.6
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhh------ccchhhcc
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKEALA 496 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~~~~ 496 (507)
.-.|+++|+||||||||+|++++.+...++..+.+++.....+... +..++.+|||+|....... ......+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 3569999999999999999999999888887777777766655554 4478899999996432210 11135678
Q ss_pred cccEEEEEEeC
Q 010548 497 SCDVTIFVYDR 507 (507)
Q Consensus 497 ~ad~vilv~D~ 507 (507)
.+|++++|+|+
T Consensus 84 ~~D~il~vvd~ 94 (292)
T PRK00089 84 DVDLVLFVVDA 94 (292)
T ss_pred cCCEEEEEEeC
Confidence 99999999996
No 468
>PRK04213 GTP-binding protein; Provisional
Probab=98.92 E-value=3.1e-09 Score=99.13 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=54.7
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCC-----------chhhhhhcc
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-----------EEGVKKILS 490 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G-----------~~~~~~~~~ 490 (507)
..++|+++|++|||||||+|++.+..+...+.+ +.+.. ...+... .+.+|||+| +++++..+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~-~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~- 80 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP-GVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI- 80 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC-ceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH-
Confidence 347999999999999999999999887544444 33322 2233322 578999999 56676655
Q ss_pred chhhcc----cccEEEEEEeC
Q 010548 491 NKEALA----SCDVTIFVYDR 507 (507)
Q Consensus 491 ~~~~~~----~ad~vilv~D~ 507 (507)
..+++ .++++++|+|+
T Consensus 81 -~~~~~~~~~~~~~vi~v~d~ 100 (201)
T PRK04213 81 -VRYIEDNADRILAAVLVVDG 100 (201)
T ss_pred -HHHHHhhhhhheEEEEEEeC
Confidence 34443 45788888884
No 469
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.91 E-value=4.6e-09 Score=96.11 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=55.4
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCch----------hhhhhc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE----------GVKKIL 489 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~ 489 (507)
.....+|+++|++|||||||+|++++..+...+.++.++.........+ + .+.+|||+|.. .+..+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-D--GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-C--cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 3456899999999999999999999987544433444333333333333 2 58899999942 233332
Q ss_pred cchhhcc---cccEEEEEEeC
Q 010548 490 SNKEALA---SCDVTIFVYDR 507 (507)
Q Consensus 490 ~~~~~~~---~ad~vilv~D~ 507 (507)
..+++ .++++++|+|+
T Consensus 92 --~~~l~~~~~~~~ii~vvd~ 110 (179)
T TIGR03598 92 --EEYLEKRENLKGVVLLMDI 110 (179)
T ss_pred --HHHHHhChhhcEEEEEecC
Confidence 24554 35899999985
No 470
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.91 E-value=1e-08 Score=96.16 Aligned_cols=150 Identities=14% Similarity=0.082 Sum_probs=84.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCC-CC---CCCC----CCCee----------eCC---------cc-------cCC
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVP-EK---VPPV----HAPTR----------LPP---------DF-------YPD 57 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~-~~---~~~~----~~~~t----------~~~---------~~-------~~~ 57 (507)
...|+++|..|+|||||+++++..... .. +... ..... ... .+ ...
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~~ 101 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPLD 101 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhccC
Confidence 467999999999999999999864110 00 0000 00000 000 00 011
Q ss_pred ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchh
Q 010548 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE 137 (507)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~ 137 (507)
+..+.+++|.|.-.... .+....+..+.|+|+.+..... ....... ..|.++++||+|+.+.... ...
T Consensus 102 ~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~------~~~~~~~--~~a~iiv~NK~Dl~~~~~~-~~~ 169 (207)
T TIGR00073 102 DIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP------LKYPGMF--KEADLIVINKADLAEAVGF-DVE 169 (207)
T ss_pred CCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh------hhhHhHH--hhCCEEEEEHHHccccchh-hHH
Confidence 45677888888211111 1112345566788877653211 1111112 4688999999999754222 112
Q ss_pred hhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHH
Q 010548 138 EVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKA 174 (507)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~ 174 (507)
. .....++.....+++++||++|.|++++++++.+.
T Consensus 170 ~-~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 170 K-MKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred H-HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 2 22223333333479999999999999999999764
No 471
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.91 E-value=1.3e-08 Score=96.70 Aligned_cols=69 Identities=17% Similarity=0.112 Sum_probs=49.0
Q ss_pred eEEEEEeCCCCccc-------------hhhhHHhhc-cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEec
Q 010548 59 VPVTIIDTSSSLEN-------------KGKLNEELK-RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCK 124 (507)
Q Consensus 59 ~~~~i~Dt~G~~~~-------------~~~~~~~~~-~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK 124 (507)
..+.++||||.... ..+...|++ ..+++++|+|++...+-.+..+ +.+.++.. ++|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~-ia~~ld~~--~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK-LAKEVDPQ--GERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH-HHHHHHHc--CCcEEEEEEC
Confidence 56889999998521 123446777 5569999999876544434322 66666665 7999999999
Q ss_pred ccCCCC
Q 010548 125 LDLRGD 130 (507)
Q Consensus 125 ~Dl~~~ 130 (507)
+|....
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998753
No 472
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.90 E-value=3.2e-09 Score=94.51 Aligned_cols=76 Identities=18% Similarity=0.163 Sum_probs=56.1
Q ss_pred EecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhh------ccchhhc--cccc
Q 010548 428 LFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKEAL--ASCD 499 (507)
Q Consensus 428 ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~~~--~~ad 499 (507)
++|.+|||||||++++++......+.++.+.......+.+. +..+.+|||+|++.+... . ..++ +.+|
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~--~~~~~~~~~d 76 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG--GKEIEIVDLPGTYSLSPYSEDEKVA--RDFLLGEKPD 76 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC--CeEEEEEECCCccccCCCChhHHHH--HHHhcCCCCc
Confidence 58999999999999999987554444555555545556655 357889999999776532 2 3445 4899
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|+|+
T Consensus 77 ~vi~v~d~ 84 (158)
T cd01879 77 LIVNVVDA 84 (158)
T ss_pred EEEEEeeC
Confidence 99999995
No 473
>PRK11058 GTPase HflX; Provisional
Probab=98.90 E-value=3e-09 Score=109.84 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=59.7
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhh--h----hhccchhhccc
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV--K----KILSNKEALAS 497 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~----~~~~~~~~~~~ 497 (507)
.+|+++|.||||||||+|++++.++.....+..|.+.....+.++ +...+.+|||+|..+. . .+..+...++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~-~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVA-DVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeC-CCCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 589999999999999999999988764444444444545556565 3336789999997331 1 12223466789
Q ss_pred ccEEEEEEeC
Q 010548 498 CDVTIFVYDR 507 (507)
Q Consensus 498 ad~vilv~D~ 507 (507)
||++++|+|+
T Consensus 277 ADlIL~VvDa 286 (426)
T PRK11058 277 ATLLLHVVDA 286 (426)
T ss_pred CCEEEEEEeC
Confidence 9999999996
No 474
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.89 E-value=1.5e-09 Score=92.19 Aligned_cols=84 Identities=19% Similarity=0.316 Sum_probs=78.5
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
-.+||.++|++.+|||||+..|+++++.+.+..+.|..+..+.+.+.|..+.+.|||..|++++.... +..++++-++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~l--Piac~dsvaI 96 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINML--PIACKDSVAI 96 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccC--ceeecCcEEE
Confidence 45899999999999999999999999998898999999999999999999999999999999998887 7889999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||.
T Consensus 97 lFmFDL 102 (205)
T KOG1673|consen 97 LFMFDL 102 (205)
T ss_pred EEEEec
Confidence 999993
No 475
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.89 E-value=3.2e-08 Score=98.93 Aligned_cols=81 Identities=21% Similarity=0.407 Sum_probs=52.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCC-CCee----eCCc--------ccCC---ceEEEEEeCCCCccch--
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVH-APTR----LPPD--------FYPD---RVPVTIIDTSSSLENK-- 73 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~-~~~t----~~~~--------~~~~---~~~~~i~Dt~G~~~~~-- 73 (507)
++|+|||.||||||||+|+|++.+... ++|.+. .... .... +.+. ..++.++|+||.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 799999999999999999999877321 122211 1110 0000 0111 1358999999975421
Q ss_pred --h---hhHHhhccCCEEEEEEeCC
Q 010548 74 --G---KLNEELKRADAVVLTYACN 93 (507)
Q Consensus 74 --~---~~~~~~~~ad~il~V~D~~ 93 (507)
. ..-..++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 2224678999999999984
No 476
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.89 E-value=4.9e-09 Score=94.57 Aligned_cols=83 Identities=22% Similarity=0.261 Sum_probs=56.6
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEE-EEEEcCCCeEEEEEEecCCchhhhh---------hccch
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAV-NVVDQPGGNKKTLILQEIPEEGVKK---------ILSNK 492 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~ 492 (507)
.++|+++|.+|+|||||++++++......+..++++.... ..+.. +...+.+|||+|...... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY--DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE--CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 4799999999999999999999987655444444433332 22333 344578999999643211 01123
Q ss_pred hhcccccEEEEEEeC
Q 010548 493 EALASCDVTIFVYDR 507 (507)
Q Consensus 493 ~~~~~ad~vilv~D~ 507 (507)
..++.+|++++|+|+
T Consensus 80 ~~~~~~d~vi~v~d~ 94 (174)
T cd01895 80 KAIERADVVLLVIDA 94 (174)
T ss_pred HHHhhcCeEEEEEeC
Confidence 466899999999995
No 477
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.87 E-value=1e-08 Score=92.66 Aligned_cols=64 Identities=25% Similarity=0.168 Sum_probs=46.4
Q ss_pred eEEEEEeCCCCcc----chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecc
Q 010548 59 VPVTIIDTSSSLE----NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKL 125 (507)
Q Consensus 59 ~~~~i~Dt~G~~~----~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~ 125 (507)
..+.|+||||... ....+..+++.+|++|+|.+++...+-..... +.+..... ...+++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTTT--CSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcCC--CCeEEEEEcCC
Confidence 4578999999853 22456688899999999999998766555442 55555555 45599999995
No 478
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.87 E-value=1.5e-08 Score=96.67 Aligned_cols=153 Identities=21% Similarity=0.223 Sum_probs=100.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceEEEEEeCCCCccchhh--h------HH
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--L------NE 78 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~--~------~~ 78 (507)
..+..-|++||-.|+|||||+++|++...... .-.+...++..... +.+..+.+.||-|....-.+ + -.
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~L-psg~~vlltDTvGFisdLP~~LvaAF~ATLe 253 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHL-PSGNFVLLTDTVGFISDLPIQLVAAFQATLE 253 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccC-CCCcEEEEeechhhhhhCcHHHHHHHHHHHH
Confidence 34456799999999999999999996543222 22222223322222 45677999999996432221 1 13
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCC-CCc----EEEEEecccCCCCCCccchhhhhHHHHHHhcccCcE
Q 010548 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI-KVP----IIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC 153 (507)
Q Consensus 79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~-~~p----iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (507)
.+.++|+++.|.|+++|.--..... .+.-++..+- ..| ++=|=||+|....... . ... .-
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~-Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e---~-------E~n----~~ 318 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRET-VLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE---E-------EKN----LD 318 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHH-HHHHHHhcCCCcHHHHhHHHhhccccccccccCc---c-------ccC----Cc
Confidence 4678999999999999977666554 6666666531 223 4667788886543221 1 111 14
Q ss_pred EEeCcccCCCchHHHHHHHHHHcC
Q 010548 154 VECSATTMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 154 ~~~SA~~g~gi~~l~~~i~~~i~~ 177 (507)
+.+||++|.|++++.+.+-..+..
T Consensus 319 v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 319 VGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cccccccCccHHHHHHHHHHHhhh
Confidence 789999999999999988776643
No 479
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=5.1e-09 Score=92.35 Aligned_cols=84 Identities=18% Similarity=0.294 Sum_probs=74.1
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+|++++|+.|.|||++++|.+.++|...+.+|.|.....-....+.+.+++..|||+|++++..+. ..||-++.++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglr--dgyyI~~qcA 86 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLR--DGYYIQGQCA 86 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccc--cccEEeccee
Confidence 46899999999999999999999999999999999987765555555456899999999999999887 6888889999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 87 iimFdV 92 (216)
T KOG0096|consen 87 IIMFDV 92 (216)
T ss_pred EEEeee
Confidence 999985
No 480
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.86 E-value=9.7e-09 Score=92.60 Aligned_cols=81 Identities=19% Similarity=0.152 Sum_probs=50.6
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh-----h-ccchhh-ccc
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----I-LSNKEA-LAS 497 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----~-~~~~~~-~~~ 497 (507)
+|+++|.+|||||||+++|.+.++.....+..+.......+.. +..++.+|||+|...... + ...... ...
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 6999999999999999999998875332222222232222222 457899999999732110 0 000111 123
Q ss_pred ccEEEEEEeC
Q 010548 498 CDVTIFVYDR 507 (507)
Q Consensus 498 ad~vilv~D~ 507 (507)
+|++++|||+
T Consensus 80 ~d~~l~v~d~ 89 (168)
T cd01897 80 RAAVLFLFDP 89 (168)
T ss_pred cCcEEEEEeC
Confidence 6899999996
No 481
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.86 E-value=1.1e-08 Score=91.54 Aligned_cols=84 Identities=21% Similarity=0.240 Sum_probs=60.3
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhc------cchhhcc
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL------SNKEALA 496 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~ 496 (507)
..+|+++|.+|+|||||+|++++.+....+..+.+++......... +...+.+|||+|........ .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEc-CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999987665555555555544444333 56788899999964432211 1134678
Q ss_pred cccEEEEEEeC
Q 010548 497 SCDVTIFVYDR 507 (507)
Q Consensus 497 ~ad~vilv~D~ 507 (507)
.+|++++|+|+
T Consensus 82 ~~d~i~~v~d~ 92 (168)
T cd04163 82 DVDLVLFVVDA 92 (168)
T ss_pred hCCEEEEEEEC
Confidence 89999999985
No 482
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.86 E-value=8.8e-09 Score=91.38 Aligned_cols=82 Identities=21% Similarity=0.292 Sum_probs=56.4
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccc-eeEEEEEEcCCCeEEEEEEecCCchhhhhh------ccchhhcc
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGE-QYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKEALA 496 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~~~~ 496 (507)
++|+++|++|+|||||++++.+.........++++ ......+.. ...++.+|||+|...+... ......++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI--GGIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe--CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999988764433333333 332223333 3457889999997554321 11235678
Q ss_pred cccEEEEEEeC
Q 010548 497 SCDVTIFVYDR 507 (507)
Q Consensus 497 ~ad~vilv~D~ 507 (507)
++|++++|+|+
T Consensus 80 ~~~~~v~v~d~ 90 (157)
T cd04164 80 EADLVLFVIDA 90 (157)
T ss_pred hCCEEEEEEEC
Confidence 99999999996
No 483
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=3.2e-09 Score=93.84 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=69.4
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
...+|+++|--|+||||++.++-.++.... .||+| +.+..+.+. .+++.+||..|+++++.+| ..|+++.+++
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~yk--n~~f~vWDvGGq~k~R~lW--~~Y~~~t~~l 88 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYK--NISFTVWDVGGQEKLRPLW--KHYFQNTQGL 88 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEc--ceEEEEEecCCCcccccch--hhhccCCcEE
Confidence 458999999999999999999998887766 68887 556666664 7889999999999999999 7999999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
|+|+|.
T Consensus 89 IfVvDS 94 (181)
T KOG0070|consen 89 IFVVDS 94 (181)
T ss_pred EEEEeC
Confidence 999995
No 484
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.85 E-value=1.7e-08 Score=88.45 Aligned_cols=143 Identities=22% Similarity=0.297 Sum_probs=121.4
Q ss_pred hcccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548 188 QTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF 267 (507)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~ 267 (507)
....++..+.++..|...|.+.+|.++-.+|....+ .++...+..++..+...+.. ....|+++.|+.++-..
T Consensus 12 ~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr-~lg~~~s~~ei~~l~~~~d~------~~~~idf~~Fl~~ms~~ 84 (160)
T COG5126 12 TQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILR-SLGFNPSEAEINKLFEEIDA------GNETVDFPEFLTVMSVK 84 (160)
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHH-HcCCCCcHHHHHHHHHhccC------CCCccCHHHHHHHHHHH
Confidence 345678889999999999999999999999999999 99999999999999888764 34689999999999888
Q ss_pred HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548 268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE 347 (507)
Q Consensus 268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~ 347 (507)
+.++-. .+-|+..|+.||.|+||.++..||.++..+...
T Consensus 85 ~~~~~~-----------------------------------------~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge 123 (160)
T COG5126 85 LKRGDK-----------------------------------------EEELREAFKLFDKDHDGYISIGELRRVLKSLGE 123 (160)
T ss_pred hccCCc-----------------------------------------HHHHHHHHHHhCCCCCceecHHHHHHHHHhhcc
Confidence 764443 467888899999999999999999999997543
Q ss_pred --CCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548 348 --SPWDEAPYKDAAETTALGNLTLKGFVSKWAL 378 (507)
Q Consensus 348 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 378 (507)
.+...+.+...++.+.+|.|+.+.|+.+|..
T Consensus 124 ~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 124 RLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 2244556777788999999999999998864
No 485
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.85 E-value=6.4e-09 Score=95.47 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=58.6
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCc----------------cceeEEEEEEcCCCeEEEEEEecCCchhhhhh
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTT----------------GEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI 488 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~----------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 488 (507)
+|+++|.+|+|||||+|++++.........+. +..... .........+.+|||+|...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGV--ATFEWPDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecce--EEEeeCCEEEEEEeCCCcHHHHHH
Confidence 48999999999999999999988765442211 112211 122224567889999999888776
Q ss_pred ccchhhcccccEEEEEEeC
Q 010548 489 LSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 489 ~~~~~~~~~ad~vilv~D~ 507 (507)
+ ..+++.+|++++|+|+
T Consensus 79 ~--~~~~~~~d~~i~v~d~ 95 (189)
T cd00881 79 V--IRGLSVSDGAILVVDA 95 (189)
T ss_pred H--HHHHHhcCEEEEEEEC
Confidence 6 6788999999999995
No 486
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.84 E-value=1.8e-09 Score=97.33 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=84.0
Q ss_pred ecCHhHHH-----HHHHhhhhhcCCCCCCCCHHHHHhhhcc---CCCCCCCCCccccccccCCCCccchHhHHhhhhhhh
Q 010548 309 ELASEAVE-----FLRGIFGLYDIDNDGAVRPAELEDLFLT---APESPWDEAPYKDAAETTALGNLTLKGFVSKWALMT 380 (507)
Q Consensus 309 ~~s~~~~~-----fl~~~f~~~d~d~dg~l~~~el~~~f~~---~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 380 (507)
.+|+++.+ +++++|+.+|+|+.|.++.+||+.++++ .|+++.+|+.++.+++.+.+|.|.+.+|.+||.+++
T Consensus 45 ~~~~~~~~~~~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~ 124 (221)
T KOG0037|consen 45 SASPSVRQPPTFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN 124 (221)
T ss_pred CcCcccccCcccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH
Confidence 56677766 8999999999999999999999999995 588888999999999999999999999999999999
Q ss_pred ---------------hcCHHHHHHHHHhhCCCC
Q 010548 381 ---------------LLDPRHSLANLIYVGYGG 398 (507)
Q Consensus 381 ---------------~~d~~~~l~~l~~lg~~~ 398 (507)
.+|..++..+|..+||+=
T Consensus 125 ~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~L 157 (221)
T KOG0037|consen 125 QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRL 157 (221)
T ss_pred HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCC
Confidence 999999999999999983
No 487
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.84 E-value=1.1e-08 Score=94.72 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=55.2
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCc----------hhhhhhcc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE----------EGVKKILS 490 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~ 490 (507)
+...+|+++|.+|||||||++++++.++...+.++.++...+..... ..++.+|||+|. +++..+.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~- 97 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI- 97 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH-
Confidence 45689999999999999999999998754444444443333333332 257889999994 3444443
Q ss_pred chhhcccc---cEEEEEEeC
Q 010548 491 NKEALASC---DVTIFVYDR 507 (507)
Q Consensus 491 ~~~~~~~a---d~vilv~D~ 507 (507)
..+++.+ +++++|+|+
T Consensus 98 -~~~~~~~~~~~~~~~v~d~ 116 (196)
T PRK00454 98 -EEYLRTRENLKGVVLLIDS 116 (196)
T ss_pred -HHHHHhCccceEEEEEEec
Confidence 3455544 678888874
No 488
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.84 E-value=5.3e-08 Score=99.86 Aligned_cols=165 Identities=16% Similarity=0.216 Sum_probs=111.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCeeeC-CcccCCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLP-PDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~-~~~~~~~t~~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (507)
..++.+.+.++|+.++|||.|++.++++.+..+. .+..+.+.+. .........+.+-|.+-. ....+.... ..||+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 3456789999999999999999999998876642 3333333322 222234445566665543 222222222 78999
Q ss_pred EEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 86 il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
++++||++++.+|.-+.. ..+.-... ...|+++|+.|+|+....+...... ..++.+++- .+.+.+|.+.... .
T Consensus 499 ~~~~YDsS~p~sf~~~a~-v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqp--de~~~~~~i-~~P~~~S~~~~~s-~ 572 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAE-VYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQP--DEFCRQLGL-PPPIHISSKTLSS-N 572 (625)
T ss_pred EEEecccCCchHHHHHHH-HHHHhhhc-cCCceEEEeeccccchhhhccCCCh--HHHHHhcCC-CCCeeeccCCCCC-c
Confidence 999999999999988775 33332222 4799999999999987643312222 667777764 4678888886333 8
Q ss_pred HHHHHHHHHHcCCCC
Q 010548 166 DVFYYAQKAVLHPTA 180 (507)
Q Consensus 166 ~l~~~i~~~i~~~~~ 180 (507)
++|..|..++..|..
T Consensus 573 ~lf~kL~~~A~~Ph~ 587 (625)
T KOG1707|consen 573 ELFIKLATMAQYPHI 587 (625)
T ss_pred hHHHHHHHhhhCCCc
Confidence 999999999888873
No 489
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.83 E-value=6.3e-09 Score=96.34 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=51.9
Q ss_pred EEEEEecCCCCchHHHHHHHhcCC----CCCCC---C--CCccceeEEEEEEc----------CCCeEEEEEEecCCchh
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERP----FSENY---A--PTTGEQYAVNVVDQ----------PGGNKKTLILQEIPEEG 484 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~----~~~~~---~--~t~~~~~~~~~~~~----------~~~~~~~~i~Dt~G~~~ 484 (507)
++|+++|++|||||||+++|++.. +...+ . .|....+....+.. .++...+.+|||+|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999999731 11111 1 12222222222210 12356889999999976
Q ss_pred hhhhccchhhcccccEEEEEEeC
Q 010548 485 VKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 485 ~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
+.... ....+.+|++++|+|+
T Consensus 81 ~~~~~--~~~~~~~d~vi~VvD~ 101 (192)
T cd01889 81 LIRTI--IGGAQIIDLMLLVVDA 101 (192)
T ss_pred HHHHH--HHHHhhCCEEEEEEEC
Confidence 53222 2345678999999996
No 490
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=4.1e-08 Score=102.48 Aligned_cols=158 Identities=19% Similarity=0.194 Sum_probs=105.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCccc-------------------CCceEEEEEeCCC
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY-------------------PDRVPVTIIDTSS 68 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~-------------------~~~~~~~i~Dt~G 68 (507)
.+..-+||+|+-..|||-|+..+-+.+.... ...++| +...+. ..---+.+|||||
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqeg---eaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg 549 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEG---EAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG 549 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccc---cccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence 3455699999999999999999987554222 111222 222221 1112478999999
Q ss_pred CccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC-----C-c---------
Q 010548 69 SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----N-A--------- 133 (507)
Q Consensus 69 ~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~-----~-~--------- 133 (507)
++.|.++......-||++|+|+|+..+...+.+. -++.++.. +.|+||+.||+|....- . +
T Consensus 550 hEsFtnlRsrgsslC~~aIlvvdImhGlepqtiE--Si~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k 625 (1064)
T KOG1144|consen 550 HESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIE--SINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK 625 (1064)
T ss_pred chhhhhhhhccccccceEEEEeehhccCCcchhH--HHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence 9999999999999999999999998875444444 34566666 89999999999965320 0 0
Q ss_pred ---cchhhhhHHHHHHh----------------cccCcEEEeCcccCCCchHHHHHHHHH
Q 010548 134 ---TSLEEVMGPIMQQF----------------REIETCVECSATTMIQVPDVFYYAQKA 174 (507)
Q Consensus 134 ---~~~~~~~~~~~~~~----------------~~~~~~~~~SA~~g~gi~~l~~~i~~~ 174 (507)
......+..+..+| +....++++||.+|+||.+|+.+|++.
T Consensus 626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 626 DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 00001111111111 122367999999999999999988865
No 491
>PRK01889 GTPase RsgA; Reviewed
Probab=98.81 E-value=5.4e-08 Score=98.52 Aligned_cols=83 Identities=17% Similarity=0.138 Sum_probs=57.1
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
..++|.+++|+++..+-....++. ++..+... ++|.+||.||+||.+. ..+....+.. +..-.+++.+||+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr-~L~~a~~~--~i~piIVLNK~DL~~~-----~~~~~~~~~~-~~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIER-YLALAWES--GAEPVIVLTKADLCED-----AEEKIAEVEA-LAPGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHH-HHHHHHHc--CCCEEEEEEChhcCCC-----HHHHHHHHHH-hCCCCcEEEEECC
Confidence 578899999999975555555553 66666666 7888999999999753 1111222222 2222378999999
Q ss_pred cCCCchHHHHHH
Q 010548 160 TMIQVPDVFYYA 171 (507)
Q Consensus 160 ~g~gi~~l~~~i 171 (507)
++.|+++|..++
T Consensus 181 ~g~gl~~L~~~L 192 (356)
T PRK01889 181 DGEGLDVLAAWL 192 (356)
T ss_pred CCccHHHHHHHh
Confidence 999988877654
No 492
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.6e-08 Score=99.11 Aligned_cols=233 Identities=12% Similarity=0.104 Sum_probs=150.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCC------------CCCee---eCCcccCCceEEEEEeCCCCc
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPV------------HAPTR---LPPDFYPDRVPVTIIDTSSSL 70 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~---~~~~------------~~~~t---~~~~~~~~~~~~~i~Dt~G~~ 70 (507)
..+..+|.|+..-.+||||...|++.-..... .... ..++| -.+.++|++++++++||||+-
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence 33456799999999999999999875321111 1111 11222 234677999999999999999
Q ss_pred cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI 150 (507)
Q Consensus 71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (507)
.|.-..+..++--|+++.|||.+.+-..+.+.- |. ...+. ++|-+..+||+|.... ..+.....+.++++..
T Consensus 114 df~leverclrvldgavav~dasagve~qtltv-wr-qadk~--~ip~~~finkmdk~~a----nfe~avdsi~ekl~ak 185 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTV-WR-QADKF--KIPAHCFINKMDKLAA----NFENAVDSIEEKLGAK 185 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCcccceeee-eh-hcccc--CCchhhhhhhhhhhhh----hhhhHHHHHHHHhCCc
Confidence 999999999999999999999998755555542 43 33334 7999999999998764 3455666666777653
Q ss_pred CcEEEeCcccCCCchH-HHHHHHHH-HcC----------CCCCCCc---cchhcccHHHHHHHHHHHhhccCC-------
Q 010548 151 ETCVECSATTMIQVPD-VFYYAQKA-VLH----------PTAPLFD---HDEQTLKPRCVRALKRIFIICDHD------- 208 (507)
Q Consensus 151 ~~~~~~SA~~g~gi~~-l~~~i~~~-i~~----------~~~~~~~---~~~~~~~~~~~~~l~~~~~~~d~~------- 208 (507)
.-.+.+.--...|+.. +++.+.+. ++. ..+|+.. ++......++..+|-......|.+
T Consensus 186 ~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ld 265 (753)
T KOG0464|consen 186 ALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLD 265 (753)
T ss_pred eEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 2223333334444422 23333322 211 1123222 121223345555555554444433
Q ss_pred ----CCCccChhhhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCC
Q 010548 209 ----MDGALNDAELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDG 249 (507)
Q Consensus 209 ----~d~~l~~~el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~ 249 (507)
+-..+.++++....++ .+++++.+.+++.+++.+.-.+|+-
T Consensus 266 ef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpsp 320 (753)
T KOG0464|consen 266 EFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSP 320 (753)
T ss_pred HhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCCh
Confidence 2345777777766654 6889999999999999999999974
No 493
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.80 E-value=8.4e-09 Score=91.56 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=52.9
Q ss_pred EEecCCCCchHHHHHHHhcCCCCCCCC-CCccceeEEEEEEcCCCeEEEEEEecCCchhhhh-----hc-cchhhccccc
Q 010548 427 LLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----IL-SNKEALASCD 499 (507)
Q Consensus 427 ~ivG~~~vGKSsll~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----~~-~~~~~~~~ad 499 (507)
+++|.+|||||||++++++......+. +..+.+........ ....+.+|||+|...+.. +. .....++++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW--GGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE--CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999876432222 22222232333333 346788999999877543 11 1135678899
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|+|+
T Consensus 79 ~ii~v~d~ 86 (157)
T cd01894 79 VILFVVDG 86 (157)
T ss_pred EEEEEEec
Confidence 99999985
No 494
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.79 E-value=4e-08 Score=90.53 Aligned_cols=151 Identities=13% Similarity=0.191 Sum_probs=100.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--eeeCCcccCCceEEEEEeCCCCccchhh-------hHHhhcc
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP--TRLPPDFYPDRVPVTIIDTSSSLENKGK-------LNEELKR 82 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~ 82 (507)
.-+|+++|-|.||||||+..++.... ........ +.++..+..++..+++.|.||..+..++ .-...+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 46999999999999999999987652 21111111 1266677778889999999997654332 2245688
Q ss_pred CCEEEEEEeCCChhhHHHHHHh----------------------------------------------------------
Q 010548 83 ADAVVLTYACNQQSTLSRLSSY---------------------------------------------------------- 104 (507)
Q Consensus 83 ad~il~V~D~~~~~s~~~~~~~---------------------------------------------------------- 104 (507)
||+|++|.|++..+.-..+.++
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 9999999999876443322221
Q ss_pred --------HHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548 105 --------WLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 105 --------~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i 175 (507)
+++.+.....-+|++.|-||+|... .++...++.+- .-+-+|+..+-|++.+++.|...+
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs-------~eevdrlAr~P----nsvViSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVS-------IEEVDRLARQP----NSVVISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccceec-------HHHHHHHhcCC----CcEEEEeccccCHHHHHHHHHHHh
Confidence 1111111111267888999998643 23344444333 357899999999999999998876
No 495
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.79 E-value=8.5e-09 Score=96.76 Aligned_cols=80 Identities=19% Similarity=0.145 Sum_probs=55.7
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCC------------------------------CCccceeEEEEEEcCCCeEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYA------------------------------PTTGEQYAVNVVDQPGGNKKT 474 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~------------------------------~t~~~~~~~~~~~~~~~~~~~ 474 (507)
+|+++|.+|+|||||+++++.....+... ..+.+...... ....+..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~-~~~~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYR-YFSTPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeeccee-EEecCCceE
Confidence 58999999999999999998755443310 02222222222 222245678
Q ss_pred EEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548 475 LILQEIPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 475 ~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
.+|||+|.++|.... ...++.+|++++|+|+
T Consensus 80 ~liDTpG~~~~~~~~--~~~~~~ad~~llVvD~ 110 (208)
T cd04166 80 IIADTPGHEQYTRNM--VTGASTADLAILLVDA 110 (208)
T ss_pred EEEECCcHHHHHHHH--HHhhhhCCEEEEEEEC
Confidence 899999998876544 4578999999999996
No 496
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.78 E-value=1.1e-08 Score=95.97 Aligned_cols=160 Identities=11% Similarity=0.005 Sum_probs=100.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCc----------cchhhhHHh
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL----------ENKGKLNEE 79 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~ 79 (507)
.+..+++++|.+|||||||+|.++..+.........++.|..+....-+..+.++|.||.. ++......|
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 4568999999999999999999998764333333345556555555567789999999932 233344455
Q ss_pred hccCC---EEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC--ccchhhhhH----HHHHH-hcc
Q 010548 80 LKRAD---AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN--ATSLEEVMG----PIMQQ-FRE 149 (507)
Q Consensus 80 ~~~ad---~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~----~~~~~-~~~ 149 (507)
+.+-+ .+.+.+|++-+... .+...+.++.+. ++|..+|.||||...... .......+. .+..+ +..
T Consensus 214 ~leR~nLv~~FLLvd~sv~i~~--~D~~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~ 289 (320)
T KOG2486|consen 214 LLERENLVRVFLLVDASVPIQP--TDNPEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLV 289 (320)
T ss_pred HHhhhhhheeeeeeeccCCCCC--CChHHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccceeehhhccccceec
Confidence 53332 35556676665322 222356666666 899999999999865422 000001111 11111 111
Q ss_pred cCcEEEeCcccCCCchHHHHHHHH
Q 010548 150 IETCVECSATTMIQVPDVFYYAQK 173 (507)
Q Consensus 150 ~~~~~~~SA~~g~gi~~l~~~i~~ 173 (507)
..|++.+|+.++.|+++|+-.+..
T Consensus 290 ~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 290 DLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cCCceeeecccccCceeeeeehhh
Confidence 226788999999999998766654
No 497
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.77 E-value=2.1e-08 Score=87.52 Aligned_cols=77 Identities=26% Similarity=0.415 Sum_probs=61.1
Q ss_pred EecCCCCchHHHHHHHhcCCC-CCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEEEe
Q 010548 428 LFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYD 506 (507)
Q Consensus 428 ivG~~~vGKSsll~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D 506 (507)
++|++|+|||||++++++... ...+.++. .+.........+....+.+||++|...+.... ...++.+|++++|+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~i~v~d 77 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLR--RLYYRGADGIILVYD 77 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHH--HHHhcCCCEEEEEEE
Confidence 589999999999999999887 44555555 55555555555567788999999998877655 568899999999998
Q ss_pred C
Q 010548 507 R 507 (507)
Q Consensus 507 ~ 507 (507)
+
T Consensus 78 ~ 78 (157)
T cd00882 78 V 78 (157)
T ss_pred C
Confidence 5
No 498
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.76 E-value=3.8e-08 Score=105.47 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=64.6
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+..+|+++|.+|+|||||+++|.+.++...+.+..|.......+.+. +..++.+|||+|++.|..++ ...++.+|++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~-~~~~i~~iDTPGhe~F~~~r--~rga~~aDia 162 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENE-DGKMITFLDTPGHEAFTSMR--ARGAKVTDIV 162 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEEC-CCcEEEEEECCCCcchhhHH--HhhhccCCEE
Confidence 45689999999999999999999988766554444434333344444 23378899999999999887 5678999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 163 ILVVda 168 (587)
T TIGR00487 163 VLVVAA 168 (587)
T ss_pred EEEEEC
Confidence 999985
No 499
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.76 E-value=2.9e-08 Score=83.20 Aligned_cols=81 Identities=25% Similarity=0.371 Sum_probs=68.6
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
+..+|+.++|-.|+|||||++++...+.... .||.| |.++.+... +..++.+||..|++..+..| ..||.+.|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hl-tpT~G--Fn~k~v~~~-g~f~LnvwDiGGqr~IRpyW--sNYyenvd~ 88 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHL-TPTNG--FNTKKVEYD-GTFHLNVWDIGGQRGIRPYW--SNYYENVDG 88 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhc-cccCC--cceEEEeec-CcEEEEEEecCCccccchhh--hhhhhccce
Confidence 4569999999999999999999988775332 24444 777788777 77889999999999999999 689999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+|+|+|.
T Consensus 89 lIyVIDS 95 (185)
T KOG0074|consen 89 LIYVIDS 95 (185)
T ss_pred EEEEEeC
Confidence 9999994
No 500
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.75 E-value=5.2e-09 Score=88.25 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=68.2
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+.+.++|-.++|||||+|....+++...--||.|.+.. .+..+.+.+.+||..|+++|++.| ..|+|++++++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmW--erycR~v~aiv 93 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMW--ERYCRGVSAIV 93 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHH--HHHhhcCcEEE
Confidence 378999999999999999999998888777788874432 334467888999999999999999 78999999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|+|+
T Consensus 94 Y~VDa 98 (186)
T KOG0075|consen 94 YVVDA 98 (186)
T ss_pred EEeec
Confidence 99996
Done!