Query 010548
Match_columns 507
No_of_seqs 589 out of 4019
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 09:10:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjg_A GTP-binding protein ENG 100.0 7.1E-34 2.4E-38 295.4 13.3 150 12-175 3-163 (436)
2 1mky_A Probable GTP-binding pr 100.0 9.4E-32 3.2E-36 279.6 18.9 150 13-175 2-164 (439)
3 4dcu_A GTP-binding protein ENG 100.0 7.7E-32 2.6E-36 281.7 12.9 151 9-173 20-181 (456)
4 4dkx_A RAS-related protein RAB 100.0 2.8E-29 9.6E-34 235.6 16.8 164 9-177 10-176 (216)
5 2atx_A Small GTP binding prote 99.9 2E-26 6.9E-31 212.4 19.7 172 4-178 10-194 (194)
6 3reg_A RHO-like small GTPase; 99.9 4.3E-26 1.5E-30 210.2 17.4 170 9-179 20-190 (194)
7 3q3j_B RHO-related GTP-binding 99.9 2.3E-26 7.9E-31 215.9 15.7 170 8-180 23-206 (214)
8 3ihw_A Centg3; RAS, centaurin, 99.9 6.7E-26 2.3E-30 207.5 17.6 160 8-176 16-179 (184)
9 1m7b_A RND3/RHOE small GTP-bin 99.9 4.7E-26 1.6E-30 208.2 15.4 166 9-177 4-183 (184)
10 3bwd_D RAC-like GTP-binding pr 99.9 5.3E-26 1.8E-30 206.9 15.7 168 10-178 6-182 (182)
11 1mh1_A RAC1; GTP-binding, GTPa 99.9 1.2E-25 4.1E-30 205.1 17.9 167 10-179 3-182 (186)
12 1c1y_A RAS-related protein RAP 99.9 1.1E-25 3.8E-30 201.5 17.0 161 11-175 2-165 (167)
13 3q72_A GTP-binding protein RAD 99.9 1.2E-25 4E-30 201.4 16.2 160 12-176 2-163 (166)
14 2iwr_A Centaurin gamma 1; ANK 99.9 2.1E-25 7.1E-30 202.4 17.4 158 10-176 5-168 (178)
15 2ew1_A RAS-related protein RAB 99.9 1.5E-25 5E-30 208.3 16.6 168 4-176 18-188 (201)
16 1u8z_A RAS-related protein RAL 99.9 2.4E-25 8.3E-30 199.1 17.5 162 10-176 2-166 (168)
17 2j0v_A RAC-like GTP-binding pr 99.9 1.9E-25 6.6E-30 208.8 17.6 169 10-179 7-182 (212)
18 3kkq_A RAS-related protein M-R 99.9 2.9E-25 9.8E-30 202.4 18.2 164 8-176 14-181 (183)
19 2gco_A H9, RHO-related GTP-bin 99.9 3.7E-25 1.3E-29 205.3 19.1 163 11-176 24-199 (201)
20 2gf9_A RAS-related protein RAB 99.9 3.6E-25 1.2E-29 203.2 18.2 163 9-176 19-184 (189)
21 2j1l_A RHO-related GTP-binding 99.9 1.1E-25 3.6E-30 211.3 14.8 169 9-178 31-210 (214)
22 2q3h_A RAS homolog gene family 99.9 2.7E-25 9.1E-30 206.0 17.2 166 9-177 17-195 (201)
23 1z0f_A RAB14, member RAS oncog 99.9 3.7E-25 1.3E-29 200.4 17.8 163 9-176 12-177 (179)
24 2nzj_A GTP-binding protein REM 99.9 4.5E-25 1.6E-29 199.2 18.2 162 10-176 2-168 (175)
25 2efe_B Small GTP-binding prote 99.9 6.5E-25 2.2E-29 199.4 19.2 164 9-177 9-175 (181)
26 4gzl_A RAS-related C3 botulinu 99.9 1.2E-25 4.1E-30 209.3 14.6 166 9-175 27-203 (204)
27 1gwn_A RHO-related GTP-binding 99.9 1.3E-25 4.3E-30 209.4 14.7 164 10-176 26-203 (205)
28 3bc1_A RAS-related protein RAB 99.9 4.4E-25 1.5E-29 202.6 18.1 169 3-176 2-184 (195)
29 3c5c_A RAS-like protein 12; GD 99.9 2.3E-25 8E-30 204.3 16.2 161 10-176 19-185 (187)
30 3tw8_B RAS-related protein RAB 99.9 2.5E-25 8.7E-30 201.9 16.2 163 9-176 6-170 (181)
31 1r2q_A RAS-related protein RAB 99.9 3.9E-25 1.3E-29 198.3 17.0 161 10-175 4-167 (170)
32 2a5j_A RAS-related protein RAB 99.9 5.1E-25 1.7E-29 202.6 18.0 165 7-176 16-183 (191)
33 2il1_A RAB12; G-protein, GDP, 99.9 1.7E-25 5.8E-30 206.1 14.7 165 8-176 22-189 (192)
34 1z0j_A RAB-22, RAS-related pro 99.9 5.1E-25 1.8E-29 197.7 17.5 162 10-176 4-168 (170)
35 1kao_A RAP2A; GTP-binding prot 99.9 3.7E-25 1.3E-29 197.7 16.4 160 11-175 2-164 (167)
36 2hup_A RAS-related protein RAB 99.9 2.7E-25 9.3E-30 206.4 16.0 165 9-177 26-193 (201)
37 3tkl_A RAS-related protein RAB 99.9 6.8E-25 2.3E-29 202.1 18.5 164 10-178 14-180 (196)
38 1z2a_A RAS-related protein RAB 99.9 4.3E-25 1.5E-29 197.8 16.6 162 10-176 3-166 (168)
39 3t5g_A GTP-binding protein RHE 99.9 3.3E-25 1.1E-29 201.6 16.1 164 11-179 5-171 (181)
40 1ek0_A Protein (GTP-binding pr 99.9 5.9E-25 2E-29 197.2 17.2 160 11-175 2-167 (170)
41 2a9k_A RAS-related protein RAL 99.9 5.7E-25 2E-29 200.6 17.3 163 9-176 15-180 (187)
42 2fg5_A RAB-22B, RAS-related pr 99.9 5.2E-25 1.8E-29 202.8 17.0 164 9-177 20-186 (192)
43 3gj0_A GTP-binding nuclear pro 99.9 2.4E-25 8.2E-30 209.7 15.0 172 1-179 4-177 (221)
44 2bov_A RAla, RAS-related prote 99.9 1E-24 3.5E-29 202.5 18.6 163 9-176 11-176 (206)
45 1z08_A RAS-related protein RAB 99.9 4.8E-25 1.6E-29 198.1 15.8 162 10-176 4-168 (170)
46 3cbq_A GTP-binding protein REM 99.9 6.1E-25 2.1E-29 203.0 16.8 165 9-178 20-189 (195)
47 3oes_A GTPase rhebl1; small GT 99.9 2.3E-25 8E-30 206.6 13.9 166 9-179 21-189 (201)
48 2hxs_A RAB-26, RAS-related pro 99.9 2.6E-25 8.8E-30 201.5 13.8 165 9-178 3-174 (178)
49 3q85_A GTP-binding protein REM 99.9 4.4E-25 1.5E-29 198.3 15.2 160 12-176 2-166 (169)
50 2fv8_A H6, RHO-related GTP-bin 99.9 9E-25 3.1E-29 203.7 17.7 166 10-178 23-201 (207)
51 2oil_A CATX-8, RAS-related pro 99.9 8.4E-25 2.9E-29 201.3 17.3 163 9-176 22-187 (193)
52 2fn4_A P23, RAS-related protei 99.9 9.5E-25 3.2E-29 198.1 17.2 163 9-176 6-171 (181)
53 1zbd_A Rabphilin-3A; G protein 99.9 1.5E-24 5.2E-29 201.2 18.7 162 10-176 6-170 (203)
54 2g3y_A GTP-binding protein GEM 99.9 8.3E-25 2.9E-29 204.5 16.8 163 9-176 34-202 (211)
55 2g6b_A RAS-related protein RAB 99.9 1.5E-24 5.3E-29 196.8 18.1 165 8-177 6-174 (180)
56 2erx_A GTP-binding protein DI- 99.9 7.3E-25 2.5E-29 197.0 15.7 161 11-176 2-166 (172)
57 2y8e_A RAB-protein 6, GH09086P 99.9 8.9E-25 3.1E-29 197.9 16.1 162 9-175 11-175 (179)
58 2bcg_Y Protein YP2, GTP-bindin 99.9 2.3E-24 7.8E-29 200.6 18.8 163 9-176 5-170 (206)
59 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.8E-24 6.1E-29 195.8 17.4 164 9-177 4-174 (177)
60 4bas_A ADP-ribosylation factor 99.9 1.2E-24 4E-29 201.0 16.3 165 5-177 10-189 (199)
61 2p5s_A RAS and EF-hand domain 99.9 1.3E-24 4.3E-29 201.4 16.5 163 9-176 25-196 (199)
62 3dz8_A RAS-related protein RAB 99.9 2E-25 6.9E-30 205.3 10.5 162 10-176 21-185 (191)
63 2atv_A RERG, RAS-like estrogen 99.9 1.6E-24 5.4E-29 200.1 16.4 161 10-176 26-190 (196)
64 2fu5_C RAS-related protein RAB 99.9 3.5E-25 1.2E-29 201.8 11.8 162 10-176 6-170 (183)
65 1z06_A RAS-related protein RAB 99.9 1.6E-24 5.6E-29 198.7 16.3 162 9-175 17-186 (189)
66 1g16_A RAS-related protein SEC 99.9 2.1E-24 7.2E-29 193.7 16.7 160 11-176 2-164 (170)
67 2ce2_X GTPase HRAS; signaling 99.9 4.5E-24 1.5E-28 190.3 18.5 160 11-176 2-164 (166)
68 1ky3_A GTP-binding protein YPT 99.9 1.5E-24 5.2E-29 196.9 15.6 165 9-176 5-177 (182)
69 2bme_A RAB4A, RAS-related prot 99.9 1.8E-24 6E-29 197.6 16.1 163 9-176 7-172 (186)
70 4dsu_A GTPase KRAS, isoform 2B 99.9 4.8E-24 1.6E-28 195.0 18.9 161 10-176 2-165 (189)
71 3con_A GTPase NRAS; structural 99.9 2.8E-24 9.7E-29 197.1 17.4 164 7-176 16-182 (190)
72 3clv_A RAB5 protein, putative; 99.9 9.3E-24 3.2E-28 195.3 20.6 160 10-176 5-203 (208)
73 3t1o_A Gliding protein MGLA; G 99.9 8.7E-25 3E-29 201.3 13.1 164 6-176 8-191 (198)
74 2o52_A RAS-related protein RAB 99.9 1.5E-24 5.3E-29 201.0 14.6 162 10-176 23-187 (200)
75 1x3s_A RAS-related protein RAB 99.9 4.5E-24 1.5E-28 196.3 17.1 163 10-178 13-179 (195)
76 2yc2_C IFT27, small RAB-relate 99.9 6.9E-25 2.3E-29 203.9 11.6 161 11-176 19-191 (208)
77 1upt_A ARL1, ADP-ribosylation 99.9 6.2E-24 2.1E-28 190.9 16.8 163 8-177 3-169 (171)
78 3cpj_B GTP-binding protein YPT 99.9 4.4E-24 1.5E-28 201.5 16.3 164 10-178 11-177 (223)
79 1r8s_A ADP-ribosylation factor 99.9 5.9E-24 2E-28 189.9 16.3 157 13-176 1-161 (164)
80 4djt_A GTP-binding nuclear pro 99.9 1.2E-24 4.2E-29 204.2 12.1 167 9-180 8-178 (218)
81 1vg8_A RAS-related protein RAB 99.9 5.9E-24 2E-28 197.6 16.5 163 9-176 5-174 (207)
82 1f6b_A SAR1; gtpases, N-termin 99.9 4.1E-24 1.4E-28 197.9 15.3 157 10-174 23-196 (198)
83 2gf0_A GTP-binding protein DI- 99.9 4.7E-24 1.6E-28 197.0 15.5 164 10-179 6-173 (199)
84 3cph_A RAS-related protein SEC 99.9 1E-23 3.5E-28 197.0 17.9 162 9-176 17-181 (213)
85 2h17_A ADP-ribosylation factor 99.9 2.2E-24 7.5E-29 196.6 12.3 160 7-174 16-180 (181)
86 1zd9_A ADP-ribosylation factor 99.9 6.2E-24 2.1E-28 194.8 15.4 161 10-176 20-184 (188)
87 1zj6_A ADP-ribosylation factor 99.9 6.5E-24 2.2E-28 194.4 15.2 164 10-180 14-181 (187)
88 1m2o_B GTP-binding protein SAR 99.9 8.2E-24 2.8E-28 194.5 15.8 157 10-174 21-189 (190)
89 2cjw_A GTP-binding protein GEM 99.9 1.2E-23 4.2E-28 193.7 16.7 162 10-176 4-171 (192)
90 2h57_A ADP-ribosylation factor 99.9 8.7E-24 3E-28 194.1 15.3 160 9-175 18-185 (190)
91 1ksh_A ARF-like protein 2; sma 99.9 1.2E-23 4.1E-28 192.3 15.9 161 10-177 16-180 (186)
92 2f7s_A C25KG, RAS-related prot 99.9 2.8E-24 9.6E-29 201.7 11.3 162 10-176 23-198 (217)
93 1fzq_A ADP-ribosylation factor 99.9 6.8E-24 2.3E-28 193.5 13.0 160 10-176 14-177 (181)
94 2b6h_A ADP-ribosylation factor 99.9 8.8E-24 3E-28 194.7 13.1 160 10-176 27-190 (192)
95 3llu_A RAS-related GTP-binding 99.9 1.7E-23 5.9E-28 193.2 14.2 162 8-175 16-195 (196)
96 2fh5_B SR-beta, signal recogni 99.9 6.9E-23 2.3E-27 191.7 17.4 161 10-174 5-213 (214)
97 3l0i_B RAS-related protein RAB 99.9 4.2E-25 1.4E-29 204.6 1.8 162 10-176 31-195 (199)
98 3th5_A RAS-related C3 botulinu 99.8 3.1E-25 1.1E-29 206.3 0.0 165 10-175 28-203 (204)
99 2wkq_A NPH1-1, RAS-related C3 99.9 5.8E-23 2E-27 205.3 16.1 166 10-178 153-331 (332)
100 2x77_A ADP-ribosylation factor 99.9 3.1E-23 1.1E-27 190.1 12.7 160 10-176 20-183 (189)
101 1moz_A ARL1, ADP-ribosylation 99.9 2.6E-23 8.8E-28 189.3 11.0 159 10-176 16-179 (183)
102 2wji_A Ferrous iron transport 99.9 1.1E-22 3.7E-27 182.5 14.0 151 11-175 2-163 (165)
103 3dpu_A RAB family protein; roc 99.9 8.4E-22 2.9E-26 209.8 22.5 163 9-179 38-210 (535)
104 2lkc_A Translation initiation 99.9 2.3E-22 7.7E-27 182.0 15.4 159 9-176 5-170 (178)
105 2zej_A Dardarin, leucine-rich 99.9 3E-23 1E-27 189.7 9.6 164 12-177 2-178 (184)
106 3pqc_A Probable GTP-binding pr 99.9 4E-22 1.4E-26 183.0 14.6 165 5-176 16-193 (195)
107 3gee_A MNME, tRNA modification 99.9 5.7E-22 1.9E-26 206.5 16.6 203 11-224 232-451 (476)
108 3o47_A ADP-ribosylation factor 99.9 1.2E-22 3.9E-27 203.0 10.8 162 10-177 163-327 (329)
109 3iev_A GTP-binding protein ERA 99.9 1.7E-21 5.7E-26 192.8 18.8 163 8-177 6-182 (308)
110 2qu8_A Putative nucleolar GTP- 99.9 8.4E-22 2.9E-26 186.5 15.8 163 10-176 27-204 (228)
111 1svi_A GTP-binding protein YSX 99.9 5.2E-22 1.8E-26 182.6 13.0 159 9-175 20-193 (195)
112 2wjg_A FEOB, ferrous iron tran 99.9 8E-22 2.7E-26 180.3 12.7 159 9-179 4-171 (188)
113 3lvq_E ARF-GAP with SH3 domain 99.9 1E-21 3.5E-26 207.6 15.0 158 10-178 320-485 (497)
114 2gj8_A MNME, tRNA modification 99.9 7.8E-22 2.7E-26 178.3 11.7 151 11-175 3-164 (172)
115 3c5h_A Glucocorticoid receptor 99.9 1E-21 3.5E-26 189.2 12.9 162 8-175 15-253 (255)
116 3r7w_A Gtpase1, GTP-binding pr 99.9 1.8E-21 6.3E-26 192.5 14.6 163 11-176 2-180 (307)
117 4dhe_A Probable GTP-binding pr 99.9 1.4E-21 4.8E-26 183.9 12.2 166 8-178 25-212 (223)
118 3b1v_A Ferrous iron uptake tra 99.9 4.2E-21 1.4E-25 186.2 15.3 153 12-177 3-164 (272)
119 3a1s_A Iron(II) transport prot 99.9 3.3E-21 1.1E-25 185.7 14.4 156 10-177 3-167 (258)
120 2dyk_A GTP-binding protein; GT 99.9 3E-21 1E-25 171.5 12.9 150 13-175 2-160 (161)
121 1xzp_A Probable tRNA modificat 99.9 1.3E-21 4.5E-26 203.8 12.0 198 12-224 243-457 (482)
122 1wf3_A GTP-binding protein; GT 99.9 9.8E-21 3.3E-25 186.4 17.1 157 10-176 5-172 (301)
123 3geh_A MNME, tRNA modification 99.9 5.7E-21 1.9E-25 198.2 15.9 198 11-224 223-437 (462)
124 2f9l_A RAB11B, member RAS onco 99.8 1.3E-20 4.5E-25 174.2 16.5 161 11-176 4-167 (199)
125 1oix_A RAS-related protein RAB 99.8 2.1E-20 7.1E-25 171.9 17.1 161 10-175 27-190 (191)
126 2cxx_A Probable GTP-binding pr 99.8 4.8E-21 1.6E-25 175.2 12.1 155 13-177 2-184 (190)
127 3r7w_B Gtpase2, GTP-binding pr 99.8 1.9E-21 6.4E-26 190.8 9.8 159 14-176 1-173 (331)
128 3iby_A Ferrous iron transport 99.8 7.4E-21 2.5E-25 183.0 11.4 150 13-174 2-164 (256)
129 3i8s_A Ferrous iron transport 99.8 1.4E-20 4.8E-25 183.1 12.4 156 11-178 2-170 (274)
130 3k53_A Ferrous iron transport 99.8 2.9E-20 1E-24 180.7 14.0 157 11-178 2-167 (271)
131 2hjg_A GTP-binding protein ENG 99.8 1.2E-20 4E-25 195.8 11.4 161 11-177 174-349 (436)
132 1nrj_B SR-beta, signal recogni 99.8 6.1E-20 2.1E-24 172.1 11.5 152 5-163 5-170 (218)
133 4dcu_A GTP-binding protein ENG 99.8 1E-19 3.6E-24 189.8 13.8 161 10-177 193-369 (456)
134 1lnz_A SPO0B-associated GTP-bi 99.8 4.3E-19 1.5E-23 177.2 12.2 160 13-180 159-333 (342)
135 3qq5_A Small GTP-binding prote 99.8 2.2E-19 7.4E-24 184.0 7.7 160 4-178 26-197 (423)
136 3sjy_A Translation initiation 99.8 3E-18 1E-22 175.9 16.2 170 8-179 4-194 (403)
137 1mky_A Probable GTP-binding pr 99.8 2.6E-18 9E-23 178.3 15.1 158 11-175 179-353 (439)
138 3izy_P Translation initiation 99.8 1.8E-19 6.3E-24 189.1 5.1 158 11-176 3-167 (537)
139 2e87_A Hypothetical protein PH 99.8 3.9E-18 1.3E-22 172.2 14.5 158 10-175 165-334 (357)
140 1ega_A Protein (GTP-binding pr 99.8 2E-18 6.9E-23 170.1 11.9 157 10-176 6-174 (301)
141 2xtp_A GTPase IMAP family memb 99.7 3E-18 1E-22 165.3 11.2 170 9-184 19-215 (260)
142 1wb1_A Translation elongation 99.7 6.3E-18 2.2E-22 176.9 13.2 164 9-176 16-188 (482)
143 2ged_A SR-beta, signal recogni 99.7 1.3E-17 4.6E-22 152.8 12.2 120 9-133 45-174 (193)
144 1s0u_A EIF-2-gamma, translatio 99.7 3.3E-17 1.1E-21 168.4 16.3 164 10-179 6-200 (408)
145 3j2k_7 ERF3, eukaryotic polype 99.7 2.1E-17 7.2E-22 171.1 14.0 158 9-169 14-217 (439)
146 3lxw_A GTPase IMAP family memb 99.7 9.1E-18 3.1E-22 160.7 10.3 168 10-184 19-215 (247)
147 2qtf_A Protein HFLX, GTP-bindi 99.7 2.2E-17 7.5E-22 166.4 13.5 163 12-178 178-355 (364)
148 3lxx_A GTPase IMAP family memb 99.7 2.4E-17 8.2E-22 156.9 13.0 163 10-178 27-215 (239)
149 3tr5_A RF-3, peptide chain rel 99.7 1E-17 3.6E-22 176.5 11.1 116 11-130 12-149 (528)
150 2aka_B Dynamin-1; fusion prote 99.7 3.9E-17 1.3E-21 160.7 13.9 160 10-174 24-250 (299)
151 1zo1_I IF2, translation initia 99.7 3E-18 1E-22 178.5 5.7 157 10-174 2-164 (501)
152 1u0l_A Probable GTPase ENGC; p 99.7 5.4E-18 1.8E-22 167.0 7.2 134 27-171 32-167 (301)
153 3cb4_D GTP-binding protein LEP 99.7 7.9E-17 2.7E-21 171.7 15.1 161 11-179 3-184 (599)
154 2ywe_A GTP-binding protein LEP 99.7 1.2E-16 4.1E-21 169.9 16.0 161 11-179 5-186 (600)
155 1kk1_A EIF2gamma; initiation o 99.7 4.7E-17 1.6E-21 167.4 12.4 165 9-179 7-202 (410)
156 2c78_A Elongation factor TU-A; 99.7 3.8E-17 1.3E-21 167.8 11.4 166 9-178 8-213 (405)
157 1zun_B Sulfate adenylate trans 99.7 1.6E-16 5.6E-21 164.5 15.6 156 9-168 21-215 (434)
158 3p26_A Elongation factor 1 alp 99.7 9.2E-17 3.1E-21 168.6 13.6 156 10-167 31-228 (483)
159 2xex_A Elongation factor G; GT 99.7 6.8E-17 2.3E-21 176.1 12.8 232 9-250 7-282 (693)
160 1g7s_A Translation initiation 99.7 1E-16 3.5E-21 171.0 13.4 159 11-176 4-217 (594)
161 1d2e_A Elongation factor TU (E 99.7 3.3E-17 1.1E-21 167.8 8.8 164 11-178 2-196 (397)
162 4dkx_A RAS-related protein RAB 99.7 1.2E-16 4E-21 149.6 10.1 84 422-507 12-95 (216)
163 3t5d_A Septin-7; GTP-binding p 99.7 1.2E-16 4.1E-21 155.3 10.1 158 11-175 7-202 (274)
164 1dar_A EF-G, elongation factor 99.7 1.3E-16 4.4E-21 173.9 11.3 232 9-250 9-284 (691)
165 1pui_A ENGB, probable GTP-bind 99.7 1.7E-16 5.8E-21 147.5 10.4 161 10-176 24-198 (210)
166 3izq_1 HBS1P, elongation facto 99.7 2.9E-16 1E-20 168.4 13.6 155 10-167 165-362 (611)
167 2elf_A Protein translation elo 99.7 1.7E-16 5.8E-21 160.4 10.9 145 14-175 23-178 (370)
168 2rdo_7 EF-G, elongation factor 99.7 1.9E-15 6.6E-20 164.8 19.7 234 9-250 7-290 (704)
169 1jny_A EF-1-alpha, elongation 99.6 1.3E-16 4.6E-21 165.1 8.6 156 10-168 4-204 (435)
170 3avx_A Elongation factor TS, e 99.6 3.5E-16 1.2E-20 173.8 12.4 166 9-178 293-487 (1289)
171 2dy1_A Elongation factor G; tr 99.6 1.9E-15 6.5E-20 164.1 15.7 116 9-128 6-139 (665)
172 3mca_A HBS1, elongation factor 99.6 4.9E-17 1.7E-21 174.0 3.2 163 9-174 174-394 (592)
173 1f60_A Elongation factor EEF1A 99.6 3.1E-16 1.1E-20 163.2 9.1 155 10-167 5-202 (458)
174 2j69_A Bacterial dynamin-like 99.6 1.3E-15 4.6E-20 166.0 13.0 162 11-176 68-324 (695)
175 2h5e_A Peptide chain release f 99.6 3.6E-15 1.2E-19 157.3 15.9 117 10-130 11-149 (529)
176 1jwy_B Dynamin A GTPase domain 99.6 2.1E-15 7.3E-20 149.4 11.4 160 10-177 22-262 (315)
177 3def_A T7I23.11 protein; chlor 99.6 4.1E-15 1.4E-19 143.5 12.1 120 10-131 34-167 (262)
178 1r5b_A Eukaryotic peptide chai 99.6 7.9E-16 2.7E-20 160.5 7.2 156 10-168 41-243 (467)
179 2qag_A Septin-2, protein NEDD5 99.6 2.2E-16 7.6E-21 159.2 2.4 159 12-176 37-232 (361)
180 1h65_A Chloroplast outer envel 99.6 1E-14 3.6E-19 141.3 11.6 120 10-131 37-170 (270)
181 2x2e_A Dynamin-1; nitration, h 99.6 3.9E-15 1.3E-19 150.0 8.7 157 11-173 30-254 (353)
182 1puj_A YLQF, conserved hypothe 99.6 1.1E-14 3.8E-19 141.6 11.4 98 63-174 3-103 (282)
183 4fid_A G protein alpha subunit 99.5 1.9E-14 6.4E-19 142.5 11.5 119 56-176 158-327 (340)
184 3ohm_A Guanine nucleotide-bind 99.5 2.3E-14 8E-19 141.3 12.0 119 57-177 165-318 (327)
185 3t34_A Dynamin-related protein 99.5 9.7E-15 3.3E-19 147.5 9.3 153 11-170 33-254 (360)
186 2ew1_A RAS-related protein RAB 99.5 5.2E-14 1.8E-18 130.1 11.6 86 420-507 23-108 (201)
187 3q3j_B RHO-related GTP-binding 99.5 5E-14 1.7E-18 131.5 11.5 85 420-507 24-108 (214)
188 2hup_A RAS-related protein RAB 99.5 3.1E-14 1.1E-18 131.5 10.0 88 418-507 24-111 (201)
189 2oil_A CATX-8, RAS-related pro 99.5 5.5E-14 1.9E-18 128.6 11.2 88 418-507 20-107 (193)
190 1udx_A The GTP-binding protein 99.5 1.3E-13 4.3E-18 140.8 14.9 158 13-179 158-327 (416)
191 2yv5_A YJEQ protein; hydrolase 99.5 1.1E-13 3.8E-18 136.1 13.9 108 57-170 48-162 (302)
192 3tw8_B RAS-related protein RAB 99.5 6.4E-14 2.2E-18 126.3 11.0 86 420-507 6-91 (181)
193 3vqt_A RF-3, peptide chain rel 99.5 6.7E-14 2.3E-18 148.3 12.4 116 11-130 30-167 (548)
194 1r2q_A RAS-related protein RAB 99.5 8.6E-14 2.9E-18 123.9 11.3 84 422-507 5-88 (170)
195 2a5j_A RAS-related protein RAB 99.5 6.4E-14 2.2E-18 128.1 10.5 87 419-507 17-103 (191)
196 3ec1_A YQEH GTPase; atnos1, at 99.5 1.4E-13 4.8E-18 139.1 13.9 100 68-173 57-158 (369)
197 2bme_A RAB4A, RAS-related prot 99.5 9.2E-14 3.2E-18 126.1 11.4 85 421-507 8-92 (186)
198 2gf9_A RAS-related protein RAB 99.5 9E-14 3.1E-18 126.8 11.4 87 419-507 18-104 (189)
199 1z08_A RAS-related protein RAB 99.5 1E-13 3.5E-18 123.6 11.2 85 421-507 4-88 (170)
200 1ek0_A Protein (GTP-binding pr 99.5 1.2E-13 4E-18 123.1 11.5 83 423-507 3-85 (170)
201 1zbd_A Rabphilin-3A; G protein 99.5 1.3E-13 4.6E-18 127.1 12.2 85 421-507 6-90 (203)
202 1z2a_A RAS-related protein RAB 99.5 1E-13 3.5E-18 123.3 11.0 84 422-507 4-87 (168)
203 2il1_A RAB12; G-protein, GDP, 99.5 6.9E-14 2.4E-18 128.1 10.0 87 419-507 22-108 (192)
204 1wxq_A GTP-binding protein; st 99.5 2.5E-14 8.7E-19 145.6 7.6 83 13-95 1-114 (397)
205 1g16_A RAS-related protein SEC 99.5 8E-14 2.8E-18 124.2 10.0 84 422-507 2-85 (170)
206 1z06_A RAS-related protein RAB 99.5 1.1E-13 3.7E-18 126.2 11.0 85 421-507 18-103 (189)
207 2efe_B Small GTP-binding prote 99.5 1.4E-13 4.8E-18 124.2 11.7 85 421-507 10-94 (181)
208 3h2y_A GTPase family protein; 99.5 3.2E-13 1.1E-17 136.4 15.4 99 69-173 56-156 (368)
209 2bcg_Y Protein YP2, GTP-bindin 99.5 1.2E-13 4.3E-18 127.7 11.4 85 421-507 6-90 (206)
210 2qnr_A Septin-2, protein NEDD5 99.5 1.7E-14 5.9E-19 141.8 5.7 160 12-178 18-215 (301)
211 3tkl_A RAS-related protein RAB 99.5 1.4E-13 4.9E-18 125.9 11.5 85 421-507 14-98 (196)
212 1wms_A RAB-9, RAB9, RAS-relate 99.5 1.5E-13 5E-18 123.6 11.3 85 421-507 5-89 (177)
213 1m7b_A RND3/RHOE small GTP-bin 99.5 1.7E-13 5.9E-18 124.4 11.8 84 421-507 5-88 (184)
214 1z0j_A RAB-22, RAS-related pro 99.5 1.8E-13 6.1E-18 122.0 11.6 84 422-507 5-88 (170)
215 1n0u_A EF-2, elongation factor 99.5 3.4E-13 1.2E-17 149.9 16.2 116 10-129 17-164 (842)
216 1z0f_A RAB14, member RAS oncog 99.5 1.6E-13 5.5E-18 123.3 11.1 86 420-507 12-97 (179)
217 2fg5_A RAB-22B, RAS-related pr 99.5 2E-13 6.9E-18 124.9 11.9 85 421-507 21-105 (192)
218 2y8e_A RAB-protein 6, GH09086P 99.5 1.7E-13 5.9E-18 123.2 11.3 84 422-507 13-96 (179)
219 2o52_A RAS-related protein RAB 99.5 7.8E-14 2.7E-18 128.7 9.1 86 420-507 22-107 (200)
220 1vg8_A RAS-related protein RAB 99.5 2E-13 6.7E-18 126.2 11.8 85 421-507 6-90 (207)
221 2hxs_A RAB-26, RAS-related pro 99.5 5.2E-14 1.8E-18 126.7 7.7 85 421-507 4-89 (178)
222 2p5s_A RAS and EF-hand domain 99.5 8.1E-14 2.8E-18 128.3 9.0 87 419-507 24-110 (199)
223 3cpj_B GTP-binding protein YPT 99.5 1.2E-13 4E-18 129.7 10.2 85 421-507 11-95 (223)
224 2qpt_A EH domain-containing pr 99.5 9.3E-14 3.2E-18 147.3 10.6 120 8-130 61-233 (550)
225 3reg_A RHO-like small GTPase; 99.5 2.2E-13 7.5E-18 124.8 11.6 85 420-507 20-104 (194)
226 1x3s_A RAS-related protein RAB 99.5 1.7E-13 5.8E-18 125.2 10.7 84 422-507 14-97 (195)
227 3clv_A RAB5 protein, putative; 99.5 2.4E-13 8E-18 124.9 11.6 85 421-507 5-126 (208)
228 1gwn_A RHO-related GTP-binding 99.5 2.6E-13 8.8E-18 125.8 11.8 84 421-507 26-109 (205)
229 3cph_A RAS-related protein SEC 99.5 2E-13 6.9E-18 126.7 11.0 86 420-507 17-102 (213)
230 3bc1_A RAS-related protein RAB 99.5 3.4E-13 1.2E-17 122.9 12.2 85 421-507 9-103 (195)
231 3oes_A GTPase rhebl1; small GT 99.5 1.5E-13 5.2E-18 126.7 9.9 86 419-507 20-105 (201)
232 3t5g_A GTP-binding protein RHE 99.5 2.1E-13 7.1E-18 123.2 10.5 83 422-507 5-87 (181)
233 2fu5_C RAS-related protein RAB 99.5 4.6E-14 1.6E-18 127.8 6.1 85 421-507 6-90 (183)
234 3dz8_A RAS-related protein RAB 99.5 4.2E-14 1.4E-18 129.3 5.7 86 420-507 20-105 (191)
235 2g6b_A RAS-related protein RAB 99.4 3.5E-13 1.2E-17 121.4 11.3 85 421-507 8-93 (180)
236 3kkq_A RAS-related protein M-R 99.4 2.8E-13 9.7E-18 122.6 10.6 85 420-507 15-99 (183)
237 1ky3_A GTP-binding protein YPT 99.4 2.1E-13 7E-18 123.0 9.5 85 421-507 6-91 (182)
238 2www_A Methylmalonic aciduria 99.4 3.8E-14 1.3E-18 142.2 4.9 151 11-175 73-277 (349)
239 3cbq_A GTP-binding protein REM 99.4 1.6E-13 5.5E-18 126.1 8.7 86 420-507 20-106 (195)
240 1c1y_A RAS-related protein RAP 99.4 3.6E-13 1.2E-17 119.5 10.4 82 423-507 3-84 (167)
241 3p32_A Probable GTPase RV1496/ 99.4 1.9E-14 6.5E-19 145.0 2.1 106 57-176 170-283 (355)
242 3c5c_A RAS-like protein 12; GD 99.4 3.5E-13 1.2E-17 122.9 10.2 84 420-507 18-101 (187)
243 2fn4_A P23, RAS-related protei 99.4 4.3E-13 1.5E-17 120.7 10.2 84 421-507 7-90 (181)
244 2j0v_A RAC-like GTP-binding pr 99.4 5.1E-13 1.8E-17 124.1 11.0 84 421-507 7-90 (212)
245 2wsm_A Hydrogenase expression/ 99.4 9E-14 3.1E-18 130.2 5.7 154 11-177 29-214 (221)
246 2q3h_A RAS homolog gene family 99.4 4.1E-13 1.4E-17 123.5 10.1 86 419-507 16-101 (201)
247 2atx_A Small GTP binding prote 99.4 5.8E-13 2E-17 121.8 10.9 84 421-507 16-99 (194)
248 1kao_A RAP2A; GTP-binding prot 99.4 5E-13 1.7E-17 118.4 10.1 82 423-507 3-84 (167)
249 3q85_A GTP-binding protein REM 99.4 3.4E-13 1.2E-17 120.2 9.0 84 423-507 2-85 (169)
250 2f7s_A C25KG, RAS-related prot 99.4 2.4E-13 8.3E-18 126.8 8.4 87 419-507 21-117 (217)
251 1mh1_A RAC1; GTP-binding, GTPa 99.4 9.1E-13 3.1E-17 119.2 11.7 83 422-507 4-86 (186)
252 2gco_A H9, RHO-related GTP-bin 99.4 7.8E-13 2.7E-17 121.9 11.2 84 421-507 23-106 (201)
253 3ihw_A Centg3; RAS, centaurin, 99.4 5.9E-13 2E-17 121.1 10.2 80 419-507 16-95 (184)
254 2iwr_A Centaurin gamma 1; ANK 99.4 5.4E-13 1.8E-17 120.1 9.6 77 422-507 6-82 (178)
255 3j25_A Tetracycline resistance 99.4 3.6E-13 1.2E-17 145.5 9.6 115 12-130 2-134 (638)
256 1u8z_A RAS-related protein RAL 99.4 8.1E-13 2.8E-17 117.2 10.1 83 422-507 3-85 (168)
257 2qag_C Septin-7; cell cycle, c 99.4 2.3E-13 7.8E-18 138.9 7.2 158 12-175 31-225 (418)
258 2f9l_A RAB11B, member RAS onco 99.4 1E-12 3.4E-17 121.0 10.9 84 422-507 4-87 (199)
259 1jal_A YCHF protein; nucleotid 99.4 6.6E-12 2.3E-16 125.3 17.4 83 12-94 2-108 (363)
260 2bov_A RAla, RAS-related prote 99.4 8.7E-13 3E-17 121.6 10.4 86 419-507 10-95 (206)
261 4gzl_A RAS-related C3 botulinu 99.4 1.2E-12 4.1E-17 121.1 11.3 84 421-507 28-111 (204)
262 1zd9_A ADP-ribosylation factor 99.4 6.7E-13 2.3E-17 121.0 9.4 82 420-507 19-100 (188)
263 4bas_A ADP-ribosylation factor 99.4 1E-12 3.5E-17 120.4 10.4 83 419-507 13-96 (199)
264 3zvr_A Dynamin-1; hydrolase, D 99.4 8.6E-13 2.9E-17 142.9 11.4 159 10-174 49-275 (772)
265 2j1l_A RHO-related GTP-binding 99.4 6.6E-13 2.2E-17 123.8 9.1 83 422-507 33-115 (214)
266 2nzj_A GTP-binding protein REM 99.4 1.1E-12 3.6E-17 117.5 10.1 83 422-507 3-87 (175)
267 2fv8_A H6, RHO-related GTP-bin 99.4 1E-12 3.4E-17 121.8 10.2 83 422-507 24-106 (207)
268 2xtz_A Guanine nucleotide-bind 99.4 6.6E-13 2.2E-17 132.8 9.4 119 57-176 181-344 (354)
269 4dsu_A GTPase KRAS, isoform 2B 99.4 1.1E-12 3.7E-17 119.1 10.0 83 422-507 3-85 (189)
270 1oix_A RAS-related protein RAB 99.4 1.3E-12 4.4E-17 119.5 10.5 85 421-507 27-111 (191)
271 2yc2_C IFT27, small RAB-relate 99.4 3.3E-13 1.1E-17 124.6 6.6 85 421-507 18-106 (208)
272 1yrb_A ATP(GTP)binding protein 99.4 3.4E-12 1.1E-16 122.7 13.8 115 58-175 108-255 (262)
273 2erx_A GTP-binding protein DI- 99.4 1.5E-12 5.1E-17 116.0 10.4 82 423-507 3-84 (172)
274 3gj0_A GTP-binding nuclear pro 99.4 3.4E-13 1.2E-17 126.3 6.4 86 420-507 12-97 (221)
275 2a9k_A RAS-related protein RAL 99.4 1.4E-12 4.7E-17 118.1 10.2 84 421-507 16-99 (187)
276 3l0i_B RAS-related protein RAB 99.4 8.6E-14 2.9E-18 128.1 2.0 86 420-507 30-115 (199)
277 1cip_A Protein (guanine nucleo 99.4 9E-13 3.1E-17 131.9 9.5 118 56-176 190-343 (353)
278 2g3y_A GTP-binding protein GEM 99.4 1.8E-12 6.1E-17 120.6 10.9 85 420-507 34-121 (211)
279 2zej_A Dardarin, leucine-rich 99.4 4.9E-13 1.7E-17 121.5 6.9 83 423-507 2-89 (184)
280 3q72_A GTP-binding protein RAD 99.4 8.6E-13 2.9E-17 117.2 8.1 81 423-507 2-82 (166)
281 3bwd_D RAC-like GTP-binding pr 99.4 3.9E-13 1.3E-17 121.4 5.6 83 422-507 7-89 (182)
282 2p67_A LAO/AO transport system 99.4 2.3E-13 7.7E-18 136.3 4.4 107 56-176 146-260 (341)
283 2atv_A RERG, RAS-like estrogen 99.4 1.7E-12 5.9E-17 119.0 9.8 83 421-507 26-108 (196)
284 4djt_A GTP-binding nuclear pro 99.3 1.2E-12 4.2E-17 122.1 8.3 85 421-507 9-94 (218)
285 4fn5_A EF-G 1, elongation fact 99.3 6.9E-13 2.4E-17 145.2 7.6 235 4-249 4-292 (709)
286 2gf0_A GTP-binding protein DI- 99.3 2.1E-12 7.3E-17 118.3 9.8 83 422-507 7-89 (199)
287 3con_A GTPase NRAS; structural 99.3 3.1E-12 1.1E-16 116.4 10.5 84 421-507 19-102 (190)
288 2h57_A ADP-ribosylation factor 99.3 3E-12 1E-16 116.6 10.2 81 421-507 19-100 (190)
289 1upt_A ARL1, ADP-ribosylation 99.3 5.9E-12 2E-16 112.2 11.8 80 421-507 5-84 (171)
290 3cnl_A YLQF, putative uncharac 99.3 5E-13 1.7E-17 128.5 4.8 89 67-170 5-94 (262)
291 2h17_A ADP-ribosylation factor 99.3 2.3E-12 8E-17 116.5 9.0 81 420-507 18-98 (181)
292 2fh5_B SR-beta, signal recogni 99.3 2.7E-12 9.2E-17 119.4 9.5 81 422-507 6-88 (214)
293 2cjw_A GTP-binding protein GEM 99.3 3E-12 1E-16 117.2 9.5 83 422-507 5-90 (192)
294 2ce2_X GTPase HRAS; signaling 99.3 3.5E-12 1.2E-16 112.7 9.7 82 423-507 3-84 (166)
295 1ksh_A ARF-like protein 2; sma 99.3 5.6E-12 1.9E-16 114.3 11.2 79 422-507 17-95 (186)
296 1zcb_A G alpha I/13; GTP-bindi 99.3 2E-12 6.9E-17 129.8 8.7 119 56-176 198-352 (362)
297 3t1o_A Gliding protein MGLA; G 99.3 6.4E-13 2.2E-17 121.4 4.6 84 421-507 12-107 (198)
298 1r8s_A ADP-ribosylation factor 99.3 3.2E-12 1.1E-16 113.2 8.8 77 424-507 1-77 (164)
299 2lkc_A Translation initiation 99.3 2E-12 6.9E-17 116.2 7.4 83 421-507 6-88 (178)
300 2dby_A GTP-binding protein; GD 99.3 1.3E-11 4.5E-16 123.9 13.7 81 13-94 2-111 (368)
301 1f6b_A SAR1; gtpases, N-termin 99.3 3.5E-12 1.2E-16 117.4 8.8 79 422-507 24-102 (198)
302 1m2o_B GTP-binding protein SAR 99.3 7.1E-12 2.4E-16 114.4 10.8 79 422-507 22-100 (190)
303 1zj6_A ADP-ribosylation factor 99.3 4.5E-12 1.5E-16 115.2 8.9 79 422-507 15-93 (187)
304 1azs_C GS-alpha; complex (lyas 99.3 2E-12 7E-17 130.8 7.0 119 57-176 215-384 (402)
305 1fzq_A ADP-ribosylation factor 99.3 5E-12 1.7E-16 114.5 8.5 80 421-507 14-93 (181)
306 2wji_A Ferrous iron transport 99.3 1.1E-11 3.6E-16 110.5 9.4 81 423-507 3-91 (165)
307 2hf9_A Probable hydrogenase ni 99.3 6E-12 2.1E-16 118.1 8.1 152 11-175 37-222 (226)
308 1wf3_A GTP-binding protein; GT 99.3 9.3E-12 3.2E-16 122.2 9.7 82 423-507 7-96 (301)
309 2b6h_A ADP-ribosylation factor 99.3 6.7E-12 2.3E-16 114.8 7.8 80 421-507 27-106 (192)
310 2x77_A ADP-ribosylation factor 99.2 9.1E-12 3.1E-16 113.3 7.7 79 422-507 21-99 (189)
311 1moz_A ARL1, ADP-ribosylation 99.2 6.8E-12 2.3E-16 113.3 6.5 80 421-507 16-95 (183)
312 3th5_A RAS-related C3 botulinu 98.9 7.6E-13 2.6E-17 122.2 0.0 84 421-507 28-111 (204)
313 3llu_A RAS-related GTP-binding 99.2 9.6E-12 3.3E-16 114.1 7.4 86 419-507 16-105 (196)
314 3r7w_A Gtpase1, GTP-binding pr 99.2 1.8E-11 6E-16 120.7 9.7 81 422-507 2-90 (307)
315 3r7w_B Gtpase2, GTP-binding pr 99.2 8.6E-12 2.9E-16 122.3 6.2 76 425-507 1-82 (331)
316 2wkq_A NPH1-1, RAS-related C3 99.2 4.2E-11 1.4E-15 119.0 11.2 84 421-507 153-236 (332)
317 2gj8_A MNME, tRNA modification 99.2 2.6E-11 8.8E-16 108.8 8.4 83 423-507 4-93 (172)
318 4a9a_A Ribosome-interacting GT 99.2 1.9E-11 6.5E-16 122.7 7.7 112 12-129 72-196 (376)
319 2wjg_A FEOB, ferrous iron tran 99.2 4.7E-11 1.6E-15 108.3 8.7 82 422-507 6-95 (188)
320 3iev_A GTP-binding protein ERA 99.2 5.9E-11 2E-15 117.0 9.7 86 420-507 7-102 (308)
321 1svi_A GTP-binding protein YSX 99.1 4.8E-11 1.7E-15 108.9 7.0 82 421-507 21-115 (195)
322 2dyk_A GTP-binding protein; GT 99.1 8E-11 2.7E-15 103.6 7.9 80 424-507 2-89 (161)
323 2qm8_A GTPase/ATPase; G protei 99.1 8.6E-11 2.9E-15 117.1 8.6 106 57-175 146-259 (337)
324 3lvq_E ARF-GAP with SH3 domain 99.1 1.9E-10 6.4E-15 121.1 11.3 80 421-507 320-399 (497)
325 3lxx_A GTPase IMAP family memb 99.1 1E-10 3.5E-15 110.9 8.0 83 421-507 27-122 (239)
326 3o47_A ADP-ribosylation factor 99.1 6.2E-11 2.1E-15 117.9 6.5 80 421-507 163-242 (329)
327 3lxw_A GTPase IMAP family memb 99.1 1E-10 3.4E-15 111.6 7.6 85 421-507 19-115 (247)
328 3c5h_A Glucocorticoid receptor 99.1 1.2E-11 4.2E-16 118.5 1.2 86 420-507 16-172 (255)
329 1nrj_B SR-beta, signal recogni 99.1 7E-11 2.4E-15 110.0 5.3 76 421-507 10-92 (218)
330 2qu8_A Putative nucleolar GTP- 99.1 2.2E-10 7.6E-15 107.6 8.6 82 421-507 27-118 (228)
331 3a1s_A Iron(II) transport prot 99.1 2.7E-10 9.2E-15 109.3 9.0 84 422-507 4-93 (258)
332 3iby_A Ferrous iron transport 99.1 1.8E-10 6.1E-15 110.4 7.5 80 424-507 2-93 (256)
333 3b1v_A Ferrous iron uptake tra 99.1 1.4E-10 4.9E-15 111.9 6.6 80 423-507 3-90 (272)
334 2ged_A SR-beta, signal recogni 99.1 5.5E-11 1.9E-15 108.4 3.4 76 421-507 46-128 (193)
335 2xtp_A GTPase IMAP family memb 99.0 3.7E-10 1.3E-14 108.4 9.0 85 421-507 20-115 (260)
336 3gee_A MNME, tRNA modification 99.0 9.2E-11 3.2E-15 122.0 5.0 84 422-507 232-322 (476)
337 4dhe_A Probable GTP-binding pr 99.0 1.9E-10 6.3E-15 107.5 6.6 84 421-507 27-125 (223)
338 3dpu_A RAB family protein; roc 99.0 2E-10 6.7E-15 122.0 7.5 86 420-507 38-131 (535)
339 3i8s_A Ferrous iron transport 99.0 3.3E-10 1.1E-14 109.7 7.5 83 423-507 3-95 (274)
340 3k53_A Ferrous iron transport 99.0 3.9E-10 1.3E-14 109.0 8.0 81 423-507 3-91 (271)
341 3def_A T7I23.11 protein; chlor 99.0 6.4E-10 2.2E-14 106.9 8.7 82 422-507 35-126 (262)
342 3pqc_A Probable GTP-binding pr 99.0 8E-10 2.7E-14 100.4 8.5 81 421-507 21-114 (195)
343 1ega_A Protein (GTP-binding pr 99.0 5.5E-10 1.9E-14 109.6 7.8 84 423-507 8-98 (301)
344 2cxx_A Probable GTP-binding pr 99.0 3.1E-10 1E-14 102.9 4.6 75 424-506 2-91 (190)
345 1xzp_A Probable tRNA modificat 98.9 2.1E-10 7.3E-15 119.3 3.3 84 422-507 242-333 (482)
346 1h65_A Chloroplast outer envel 98.9 1.7E-09 5.7E-14 104.5 8.6 86 421-507 37-129 (270)
347 1t9h_A YLOQ, probable GTPase E 98.9 5E-10 1.7E-14 109.5 4.2 90 74-168 78-168 (307)
348 3geh_A MNME, tRNA modification 98.9 2.9E-10 9.9E-15 117.8 1.4 84 422-507 223-313 (462)
349 1jal_A YCHF protein; nucleotid 98.9 1.6E-09 5.6E-14 108.0 6.3 84 424-507 3-106 (363)
350 3j2k_7 ERF3, eukaryotic polype 98.9 4.8E-09 1.6E-13 108.3 9.3 83 421-507 15-128 (439)
351 2ohf_A Protein OLA1, GTP-bindi 98.9 2.5E-09 8.7E-14 107.7 7.0 88 10-100 20-134 (396)
352 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 2.9E-08 9.9E-13 100.2 14.2 85 10-94 18-127 (392)
353 3l82_B F-box only protein 4; T 98.8 2.1E-09 7E-14 97.5 5.1 106 67-176 110-222 (227)
354 2ohf_A Protein OLA1, GTP-bindi 98.8 2.2E-09 7.5E-14 108.2 5.9 86 422-507 21-126 (396)
355 3p26_A Elongation factor 1 alp 98.8 3.7E-09 1.3E-13 110.6 6.3 83 421-507 31-144 (483)
356 3qq5_A Small GTP-binding prote 98.8 1.5E-09 5.3E-14 110.9 2.9 86 421-507 32-123 (423)
357 2mys_B Myosin; muscle protein, 98.8 2.7E-08 9.4E-13 87.9 10.6 138 190-378 19-159 (166)
358 2qtf_A Protein HFLX, GTP-bindi 98.8 9.3E-09 3.2E-13 103.3 8.4 79 424-507 179-267 (364)
359 3izq_1 HBS1P, elongation facto 98.8 7E-09 2.4E-13 111.2 7.6 83 421-507 165-278 (611)
360 2rcn_A Probable GTPase ENGC; Y 98.8 3E-08 1E-12 98.7 11.5 83 79-169 127-211 (358)
361 2obh_A Centrin-2; DNA repair c 98.8 1.7E-08 5.9E-13 87.1 8.2 137 193-376 3-141 (143)
362 3ec1_A YQEH GTPase; atnos1, at 98.8 2.2E-10 7.4E-15 115.6 -4.7 145 12-165 162-319 (369)
363 3fwb_A Cell division control p 98.7 3.7E-08 1.3E-12 86.3 10.2 143 188-377 15-159 (161)
364 1wxq_A GTP-binding protein; st 98.7 8.8E-09 3E-13 104.7 6.6 83 424-507 1-111 (397)
365 3izy_P Translation initiation 98.7 4.6E-10 1.6E-14 117.9 -3.3 82 423-507 4-85 (537)
366 3t5d_A Septin-7; GTP-binding p 98.7 2.7E-08 9.2E-13 96.2 9.4 61 422-482 7-75 (274)
367 3j04_B Myosin regulatory light 98.7 1.4E-08 4.7E-13 87.3 6.4 135 192-377 3-139 (143)
368 3u0k_A Rcamp; fluorescent prot 98.7 1.3E-08 4.4E-13 102.0 6.5 146 183-375 289-436 (440)
369 3qrx_A Centrin; calcium-bindin 98.7 3.8E-08 1.3E-12 87.1 8.8 144 188-378 20-165 (169)
370 2j37_W Signal recognition part 98.7 3.4E-08 1.2E-12 102.9 9.7 151 11-174 100-310 (504)
371 1dtl_A Cardiac troponin C; hel 98.7 5.2E-08 1.8E-12 85.4 9.4 149 186-378 8-159 (161)
372 3i5g_B Myosin regulatory light 98.7 3.6E-08 1.2E-12 86.5 8.0 139 186-376 6-146 (153)
373 2aka_B Dynamin-1; fusion prote 98.7 3.3E-08 1.1E-12 96.5 8.6 28 422-449 25-52 (299)
374 2lmt_A Calmodulin-related prot 98.7 2.5E-08 8.4E-13 86.8 6.8 139 190-375 4-144 (148)
375 1q80_A SCP, sarcoplasmic calci 98.7 5.4E-08 1.9E-12 86.5 9.0 145 193-377 3-155 (174)
376 3akb_A Putative calcium bindin 98.7 3.8E-08 1.3E-12 86.6 7.8 148 195-379 3-161 (166)
377 1zun_B Sulfate adenylate trans 98.7 3.2E-08 1.1E-12 102.1 8.4 83 421-507 22-137 (434)
378 3sjy_A Translation initiation 98.7 2E-08 6.7E-13 102.7 6.5 85 421-507 6-108 (403)
379 1jwy_B Dynamin A GTPase domain 98.7 1.8E-08 6.2E-13 99.3 5.8 27 422-448 23-49 (315)
380 1pui_A ENGB, probable GTP-bind 98.7 1.8E-08 6E-13 92.9 5.4 82 421-507 24-118 (210)
381 3l2o_B F-box only protein 4; s 98.7 3.3E-08 1.1E-12 94.1 7.2 109 66-177 194-308 (312)
382 1nya_A Calerythrin; EF-hand, m 98.6 6.6E-08 2.3E-12 86.0 8.8 151 192-378 3-164 (176)
383 2aao_A CDPK, calcium-dependent 98.6 1.6E-07 5.4E-12 82.8 11.2 141 190-378 21-161 (166)
384 1lnz_A SPO0B-associated GTP-bi 98.6 1.5E-08 5.2E-13 100.8 5.0 83 424-507 159-246 (342)
385 3ox6_A Calcium-binding protein 98.6 6.8E-08 2.3E-12 83.6 8.6 145 190-377 5-152 (153)
386 1jny_A EF-1-alpha, elongation 98.6 2.2E-08 7.4E-13 103.4 6.0 82 422-507 5-117 (435)
387 2bl0_C Myosin regulatory light 98.6 4.7E-08 1.6E-12 83.8 7.1 137 193-377 3-141 (142)
388 2c78_A Elongation factor TU-A; 98.6 1.7E-08 5.9E-13 103.2 5.1 83 421-507 9-108 (405)
389 2sas_A Sarcoplasmic calcium-bi 98.6 2.5E-07 8.7E-12 82.8 12.3 153 192-379 4-168 (185)
390 1exr_A Calmodulin; high resolu 98.6 9.3E-08 3.2E-12 82.8 9.0 139 191-376 5-145 (148)
391 1wb1_A Translation elongation 98.6 3.8E-08 1.3E-12 102.8 7.6 83 421-507 17-106 (482)
392 3h2y_A GTPase family protein; 98.6 3E-10 1E-14 114.5 -8.1 143 12-163 160-316 (368)
393 2mys_C Myosin; muscle protein, 98.6 1.9E-07 6.4E-12 80.4 10.7 143 191-377 3-147 (149)
394 4a9a_A Ribosome-interacting GT 98.6 6.3E-08 2.2E-12 97.1 8.5 84 422-507 71-159 (376)
395 2dby_A GTP-binding protein; GD 98.6 2.7E-08 9.3E-13 99.8 5.8 84 424-507 2-109 (368)
396 1d2e_A Elongation factor TU (E 98.6 3.2E-08 1.1E-12 100.9 6.2 83 423-507 3-99 (397)
397 4ds7_A Calmodulin, CAM; protei 98.6 1.2E-07 4.2E-12 81.4 9.1 140 190-377 5-146 (147)
398 3dtp_E RLC, myosin regulatory 98.6 2.5E-08 8.6E-13 91.2 4.9 136 190-377 51-188 (196)
399 1wdc_B Scallop myosin; calcium 98.6 7.8E-08 2.7E-12 84.0 7.8 136 190-377 12-149 (156)
400 2ovk_B RLC, myosin regulatory 98.6 2.9E-08 9.9E-13 86.5 5.0 138 188-377 8-147 (153)
401 1f60_A Elongation factor EEF1A 98.6 4.3E-08 1.5E-12 101.8 7.0 82 422-507 6-118 (458)
402 2ccm_A Calexcitin; EF hand, ca 98.6 2.4E-07 8.2E-12 83.8 11.2 155 191-378 7-171 (191)
403 1kk1_A EIF2gamma; initiation o 98.6 1.5E-07 5.3E-12 96.2 11.0 85 421-507 8-116 (410)
404 2lvv_A Flagellar calcium-bindi 98.6 7.5E-08 2.6E-12 90.1 7.6 147 190-378 45-198 (226)
405 2h5e_A Peptide chain release f 98.6 3.9E-08 1.3E-12 103.6 6.1 84 422-507 12-115 (529)
406 2hpk_A Photoprotein berovin; s 98.6 1.4E-07 4.8E-12 86.8 9.1 156 192-379 32-191 (208)
407 1s0u_A EIF-2-gamma, translatio 98.6 1.9E-07 6.5E-12 95.5 10.9 84 422-507 7-114 (408)
408 1tq4_A IIGP1, interferon-induc 98.6 6.9E-07 2.4E-11 90.7 14.8 159 12-176 69-252 (413)
409 2qpt_A EH domain-containing pr 98.6 6E-08 2E-12 102.7 7.3 82 422-507 64-198 (550)
410 2e87_A Hypothetical protein PH 98.6 1.3E-07 4.5E-12 94.9 9.1 84 422-507 166-256 (357)
411 2j69_A Bacterial dynamin-like 98.6 9E-08 3.1E-12 104.3 8.5 86 422-507 68-210 (695)
412 2qag_B Septin-6, protein NEDD5 98.6 6.6E-08 2.3E-12 98.2 6.8 113 13-130 43-191 (427)
413 2lhi_A Calmodulin, serine/thre 98.6 6.2E-08 2.1E-12 87.1 5.9 137 192-376 7-145 (176)
414 3i5g_C Myosin catalytic light 98.5 2.6E-08 9E-13 88.0 3.2 139 190-374 3-147 (159)
415 2ovk_C Myosin catalytic light 98.5 5.2E-08 1.8E-12 85.4 4.9 144 190-379 3-152 (159)
416 3sjs_A URE3-BP sequence specif 98.5 1.6E-07 5.4E-12 87.6 8.5 139 187-380 42-182 (220)
417 2qag_A Septin-2, protein NEDD5 98.5 2.6E-08 8.9E-13 100.1 3.3 69 421-489 35-119 (361)
418 3tr5_A RF-3, peptide chain rel 98.5 2E-08 7E-13 105.7 2.5 82 422-507 12-115 (528)
419 3t34_A Dynamin-related protein 98.5 1.2E-07 4.2E-12 95.3 8.1 29 424-452 35-63 (360)
420 1top_A Troponin C; contractIle 98.5 2.6E-07 8.8E-12 80.9 9.2 144 190-377 14-159 (162)
421 3mca_A HBS1, elongation factor 98.5 1.8E-08 6.2E-13 107.7 1.9 84 420-507 174-288 (592)
422 1zo1_I IF2, translation initia 98.5 1.5E-08 5.1E-13 105.5 0.6 81 423-507 4-84 (501)
423 3e3r_A Calcyphosin, calcyphosi 98.5 3.1E-07 1.1E-11 83.9 9.4 150 194-391 35-195 (204)
424 2bl0_B Myosin regulatory light 98.5 1.5E-07 5.1E-12 80.8 6.7 131 198-377 7-139 (145)
425 3pm8_A PFCDPK2, calcium-depend 98.5 2.7E-08 9.3E-13 91.0 2.1 139 191-377 52-194 (197)
426 1y1x_A Leishmania major homolo 98.5 5.8E-07 2E-11 81.5 10.9 131 195-379 26-158 (191)
427 3cs1_A Flagellar calcium-bindi 98.5 7.8E-08 2.7E-12 89.5 4.9 146 191-378 43-195 (219)
428 2jnf_A Troponin C; stretch act 98.5 2.3E-07 7.8E-12 81.0 7.7 145 190-377 7-154 (158)
429 1r5b_A Eukaryotic peptide chai 98.5 1.2E-07 3.9E-12 98.8 6.6 83 421-507 41-154 (467)
430 1m45_A MLC1P, myosin light cha 98.5 8.8E-08 3E-12 82.7 4.7 139 198-377 6-146 (148)
431 2znd_A Programmed cell death p 98.5 4.1E-07 1.4E-11 80.8 9.0 132 195-379 6-139 (172)
432 1g7s_A Translation initiation 98.5 8.3E-08 2.8E-12 102.3 4.9 83 423-507 5-103 (594)
433 1n0u_A EF-2, elongation factor 98.5 2.5E-07 8.4E-12 102.9 8.8 85 421-507 17-131 (842)
434 2f2o_A Calmodulin fused with c 98.5 2.7E-07 9.3E-12 82.4 7.4 141 192-379 7-149 (179)
435 3k21_A PFCDPK3, calcium-depend 98.5 3.4E-07 1.2E-11 83.2 8.1 137 191-377 47-190 (191)
436 2elf_A Protein translation elo 98.4 1.1E-07 3.6E-12 95.9 4.7 70 425-506 23-92 (370)
437 3avx_A Elongation factor TS, e 98.4 1.4E-07 4.8E-12 105.6 5.7 85 421-507 294-392 (1289)
438 1ggw_A Protein (CDC4P); light 98.4 2.1E-07 7.3E-12 79.5 5.5 131 197-377 6-138 (140)
439 1wdc_C Scallop myosin; calcium 98.4 2E-07 6.7E-12 81.3 5.0 141 191-378 4-150 (156)
440 3cb4_D GTP-binding protein LEP 98.4 3E-07 1E-11 97.9 7.3 84 422-507 3-104 (599)
441 3sop_A Neuronal-specific septi 98.4 5.3E-07 1.8E-11 86.7 8.3 114 12-130 2-155 (270)
442 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 3.7E-07 1.3E-11 92.1 7.4 83 423-507 20-125 (392)
443 3khe_A Calmodulin-like domain 98.4 1.3E-07 4.4E-12 85.5 3.7 141 193-380 37-187 (191)
444 3sg6_A Gcamp2, myosin light ch 98.4 3.8E-07 1.3E-11 93.3 7.4 143 188-377 304-448 (450)
445 3mse_B Calcium-dependent prote 98.4 4.8E-07 1.6E-11 81.2 7.2 135 192-377 35-177 (180)
446 1qv0_A Obelin, OBL; photoprote 98.4 7.3E-07 2.5E-11 80.7 8.5 156 190-378 14-177 (195)
447 1alv_A Calpain, S-camld; calci 98.4 1.1E-06 3.9E-11 78.0 9.3 130 195-379 3-141 (173)
448 2ywe_A GTP-binding protein LEP 98.4 6.1E-07 2.1E-11 95.4 8.7 84 422-507 5-106 (600)
449 4fid_A G protein alpha subunit 98.4 9E-07 3.1E-11 87.4 9.0 36 470-507 159-194 (340)
450 3ll8_B Calcineurin subunit B t 98.4 2.8E-07 9.5E-12 80.0 4.8 137 193-380 3-146 (155)
451 1s6i_A CDPK, calcium-dependent 98.4 3E-07 1E-11 83.3 5.1 134 196-377 10-143 (188)
452 3ohm_A Guanine nucleotide-bind 98.4 1.2E-06 4.2E-11 86.1 9.8 36 470-507 165-200 (327)
453 2xex_A Elongation factor G; GT 98.3 5E-07 1.7E-11 98.4 7.5 83 421-507 8-108 (693)
454 1dar_A EF-G, elongation factor 98.3 2.8E-07 9.5E-12 100.4 5.5 81 421-507 10-110 (691)
455 1uhk_A Aequorin 2, aequorin; E 98.3 6E-07 2E-11 80.9 6.7 154 191-378 11-173 (191)
456 2dy1_A Elongation factor G; tr 98.3 5.6E-07 1.9E-11 97.6 7.6 84 422-507 8-107 (665)
457 2x2e_A Dynamin-1; nitration, h 98.3 6.4E-07 2.2E-11 89.7 7.5 28 422-449 30-57 (353)
458 2bec_A Calcineurin B homologou 98.3 5.8E-07 2E-11 82.2 6.1 154 190-378 23-183 (202)
459 2rdo_7 EF-G, elongation factor 98.3 1E-06 3.5E-11 96.1 8.9 84 422-507 9-115 (704)
460 2qac_A Myosin A tail domain in 98.3 3.7E-07 1.3E-11 78.6 4.4 129 194-376 12-144 (146)
461 1puj_A YLQF, conserved hypothe 98.3 4.1E-07 1.4E-11 88.1 4.7 59 10-70 118-176 (282)
462 3q5i_A Protein kinase; CDPK, m 98.3 1E-06 3.5E-11 92.6 7.9 142 191-379 350-498 (504)
463 3lij_A Calcium/calmodulin depe 98.3 1.3E-06 4.4E-11 91.6 8.4 142 191-379 341-489 (494)
464 1w7j_B Myosin light chain 1; m 98.3 1.3E-07 4.4E-12 82.0 0.5 142 192-377 6-149 (151)
465 1gjy_A Sorcin, CP-22, V19; cal 98.2 5.5E-06 1.9E-10 73.1 10.6 125 200-379 5-135 (167)
466 2v3c_C SRP54, signal recogniti 98.2 1.3E-06 4.4E-11 89.6 6.1 111 12-129 99-252 (432)
467 3mwu_A Calmodulin-domain prote 98.2 2.3E-06 7.7E-11 89.5 7.8 141 192-379 327-482 (486)
468 3a8r_A Putative uncharacterize 98.2 1.2E-06 4.2E-11 78.7 4.9 134 196-379 28-171 (179)
469 2qag_C Septin-7; cell cycle, c 98.2 3.1E-06 1E-10 86.3 7.9 64 422-485 30-101 (418)
470 3cnl_A YLQF, putative uncharac 98.1 8.4E-07 2.9E-11 84.9 3.4 57 13-71 100-156 (262)
471 2qnr_A Septin-2, protein NEDD5 98.1 1E-06 3.5E-11 86.1 3.9 61 422-482 17-86 (301)
472 1jfj_A Ehcabp, calcium-binding 98.1 3.4E-06 1.2E-10 70.8 6.4 132 198-376 2-133 (134)
473 1juo_A Sorcin; calcium-binding 98.1 7.5E-06 2.6E-10 74.5 8.8 127 197-379 34-166 (198)
474 2f33_A Calbindin; EF-hand, Ca2 98.1 7.6E-06 2.6E-10 77.6 9.0 147 195-376 102-258 (263)
475 3nyv_A Calmodulin-domain prote 98.1 3.2E-06 1.1E-10 88.3 6.9 139 192-377 331-479 (484)
476 1k94_A Grancalcin; penta-EF-ha 98.1 1.1E-05 3.8E-10 70.9 9.4 124 201-379 4-133 (165)
477 3dm5_A SRP54, signal recogniti 98.1 2.9E-05 9.8E-10 79.3 13.6 141 11-167 99-281 (443)
478 2ct9_A Calcium-binding protein 98.1 6.6E-06 2.3E-10 75.5 8.1 165 190-391 23-194 (208)
479 1f5n_A Interferon-induced guan 98.1 3.7E-06 1.3E-10 89.0 6.7 62 10-71 36-103 (592)
480 3dd4_A KV channel-interacting 98.0 1.7E-05 5.7E-10 74.1 9.9 135 194-377 65-213 (229)
481 2i7a_A Calpain 13; calcium-dep 98.0 1.1E-05 3.8E-10 72.0 8.1 119 206-379 14-143 (174)
482 3fs7_A Parvalbumin, thymic; ca 98.0 3E-06 1E-10 69.1 3.9 100 227-377 4-108 (109)
483 2be4_A Hypothetical protein LO 98.0 7.7E-06 2.6E-10 78.0 7.2 151 195-378 10-176 (272)
484 2pvb_A Protein (parvalbumin); 98.0 4.6E-06 1.6E-10 67.8 4.5 99 227-377 4-107 (108)
485 2zfd_A Calcineurin B-like prot 98.0 1.3E-05 4.3E-10 74.7 7.9 140 190-377 42-193 (226)
486 1udx_A The GTP-binding protein 98.0 1.2E-05 4.1E-10 81.8 7.9 83 424-507 158-245 (416)
487 1jba_A GCAP-2, protein (guanyl 98.0 8.7E-06 3E-10 74.3 6.2 138 192-377 18-175 (204)
488 2lv7_A Calcium-binding protein 98.0 6.5E-06 2.2E-10 66.3 4.6 71 305-375 25-97 (100)
489 1ij5_A Plasmodial specific LAV 97.9 7.7E-06 2.6E-10 80.7 6.0 129 194-378 186-318 (323)
490 1pva_A Parvalbumin; calcium bi 97.9 2.4E-06 8.3E-11 69.7 1.9 99 228-377 5-108 (110)
491 2ehb_A Calcineurin B-like prot 97.9 1.2E-05 4.1E-10 73.5 6.7 140 191-378 32-183 (207)
492 1dgu_A Calcium-saturated CIB; 97.9 1.1E-05 3.9E-10 72.1 6.1 137 190-377 14-170 (183)
493 1s6c_A KV4 potassium channel-i 97.9 1.1E-05 3.9E-10 72.0 6.0 135 194-377 19-167 (183)
494 1bu3_A Calcium-binding protein 97.9 5.6E-06 1.9E-10 67.4 3.0 101 226-377 3-108 (109)
495 1qxp_A MU-like calpain; M-calp 97.9 4.1E-05 1.4E-09 86.1 10.7 172 195-380 606-804 (900)
496 5pal_A Parvalbumin; calcium-bi 97.9 5.8E-06 2E-10 67.3 2.7 98 229-377 5-107 (109)
497 2be4_A Hypothetical protein LO 97.8 1E-05 3.6E-10 77.0 4.7 149 196-377 104-267 (272)
498 2kgr_A Intersectin-1; structur 97.8 5.1E-06 1.7E-10 68.3 1.8 77 304-380 2-78 (111)
499 2pmy_A RAS and EF-hand domain- 97.8 2.3E-06 7.7E-11 67.6 -0.4 77 302-378 13-89 (91)
500 1rro_A RAT oncomodulin; calciu 97.8 7.3E-06 2.5E-10 66.6 2.7 98 229-377 5-107 (108)
No 1
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=7.1e-34 Score=295.39 Aligned_cols=150 Identities=17% Similarity=0.120 Sum_probs=100.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCc--------cchhhhHHhh
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSL--------ENKGKLNEEL 80 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~~ 80 (507)
..+|+|+|++|||||||+|+|++..+. .....+++| ....+.+.+..+.+|||||+. .+..+...++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~--~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS--IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce--eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 369999999999999999999988743 223334444 223344567889999999986 4455667889
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (507)
Q Consensus 81 ~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (507)
+.||++|+|+|++++.+..+.. +...+++. ++|+++|+||+|+...... . ...+ .++. .+++++||++
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~~--~~~~l~~~--~~pvilv~NK~D~~~~~~~--~---~~~~--~lg~-~~~~~iSA~~ 148 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADEE--VAKILYRT--KKPVVLAVNKLDNTEMRAN--I---YDFY--SLGF-GEPYPISGTH 148 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHHH--HHHHHTTC--CSCEEEEEECCCC-----C--C---CSSG--GGSS-CCCEECBTTT
T ss_pred HhCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECccCccchhh--H---HHHH--HcCC-CCeEEEeCcC
Confidence 9999999999999987766532 66666654 7999999999998754221 1 1111 2221 2579999999
Q ss_pred CCCchHHHHHHHHHH
Q 010548 161 MIQVPDVFYYAQKAV 175 (507)
Q Consensus 161 g~gi~~l~~~i~~~i 175 (507)
|.|+.++++++.+.+
T Consensus 149 g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 149 GLGLGDLLDAVAEHF 163 (436)
T ss_dssp TBTHHHHHHHHHHTG
T ss_pred CCChHHHHHHHHHhc
Confidence 999999999987643
No 2
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.97 E-value=9.4e-32 Score=279.65 Aligned_cols=150 Identities=17% Similarity=0.149 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccc---------hhhhHHhh
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLEN---------KGKLNEEL 80 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 80 (507)
.+|+|+|+||||||||+|+|++.+. +.....+++|.. ..+.+.+..+.+|||||++.. ..+...++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~--~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK--AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC----------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--ceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 3899999999999999999998873 223333444422 233456778999999997642 23456789
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhh-HHHHHHhcccCcEEEeCcc
Q 010548 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM-GPIMQQFREIETCVECSAT 159 (507)
Q Consensus 81 ~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~SA~ 159 (507)
++||++|+|+|++++.+..+.. +...+++. ++|+++|+||+|+... ..... ..+. .++. .+++++||+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~--i~~~l~~~--~~p~ilv~NK~D~~~~-----~~~~~~~~~~-~lg~-~~~~~iSA~ 148 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDES--LADFLRKS--TVDTILVANKAENLRE-----FEREVKPELY-SLGF-GEPIPVSAE 148 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHH--HHHHHHHH--TCCEEEEEESCCSHHH-----HHHHTHHHHG-GGSS-CSCEECBTT
T ss_pred HhCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEeCCCCccc-----cHHHHHHHHH-hcCC-CCEEEEecc
Confidence 9999999999999876665422 45556655 7999999999997531 01111 2222 2332 257999999
Q ss_pred cCCCchHHHHHHHHHH
Q 010548 160 TMIQVPDVFYYAQKAV 175 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i 175 (507)
+|.|+.++++.|.+.+
T Consensus 149 ~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 149 HNINLDTMLETIIKKL 164 (439)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999987654
No 3
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.97 E-value=7.7e-32 Score=281.67 Aligned_cols=151 Identities=17% Similarity=0.126 Sum_probs=101.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCC--------CccchhhhH
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSS--------SLENKGKLN 77 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G--------~~~~~~~~~ 77 (507)
.+...+|+|+|++|||||||+|+|++..+. .....+++| ....+.+.+..+.+||||| ++.+.....
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~--~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERIS--IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCc--ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 345679999999999999999999998753 222233344 2234446678999999999 445556677
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (507)
Q Consensus 78 ~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (507)
.+++.+|++|+|+|.+++.+..+. .+...+++. ++|+++|+||+|+...... ....+...++ .++++|
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~~d~--~l~~~l~~~--~~pvilV~NK~D~~~~~~~-----~~e~~~lg~~---~~~~iS 165 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTAADE--EVAKILYRT--KKPVVLAVNKLDNTEMRAN-----IYDFYSLGFG---EPYPIS 165 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCHHHH--HHHHHHTTC--CSCEEEEEECC--------------CCSGGGSSS---SEEECC
T ss_pred hhHhhCCEEEEEEeCCCCCChHHH--HHHHHHHHc--CCCEEEEEECccchhhhhh-----HHHHHHcCCC---ceEEee
Confidence 889999999999998876555443 266667664 8999999999998753221 1122222333 468999
Q ss_pred cccCCCchHHHHHHHH
Q 010548 158 ATTMIQVPDVFYYAQK 173 (507)
Q Consensus 158 A~~g~gi~~l~~~i~~ 173 (507)
|++|.|+.++++.+.+
T Consensus 166 A~~g~gv~~L~~~i~~ 181 (456)
T 4dcu_A 166 GTHGLGLGDLLDAVAE 181 (456)
T ss_dssp TTTCTTHHHHHHHHHT
T ss_pred cccccchHHHHHHHHh
Confidence 9999999999998754
No 4
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.96 E-value=2.8e-29 Score=235.57 Aligned_cols=164 Identities=17% Similarity=0.231 Sum_probs=133.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-C-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-P-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
+++.+||+|+|++|||||||++||+.+.|...+.++.. . ......+....+++.||||+|++++..+...+++.++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 46789999999999999999999999999877655433 2 223445556778999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
++|||++++.||+.+.. |+..++.. .+++|++|||||+|+...+.+ ..++...++++++. +|++|||++|.||+
T Consensus 90 ilv~di~~~~Sf~~i~~-~~~~i~~~~~~~~piilVgNK~Dl~~~r~V--~~~e~~~~a~~~~~--~~~e~SAktg~nV~ 164 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTK-WIDDVRTERGSDVIIMLVGNKTDLADKRQV--SIEEGERKAKELNV--MFIETSAKAGYNVK 164 (216)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEEEBTTTTBSHH
T ss_pred EEEeecchhHHHHHHHH-HHHHHHHhcCCCCeEEEEeeccchHhcCcc--cHHHHhhHHHHhCC--eeEEEeCCCCcCHH
Confidence 99999999999999987 88887654 468999999999999887776 45567888888874 69999999999999
Q ss_pred HHHHHHHHHHcC
Q 010548 166 DVFYYAQKAVLH 177 (507)
Q Consensus 166 ~l~~~i~~~i~~ 177 (507)
++|+.|++.+..
T Consensus 165 e~F~~i~~~i~~ 176 (216)
T 4dkx_A 165 QLFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 5
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2e-26 Score=212.36 Aligned_cols=172 Identities=23% Similarity=0.339 Sum_probs=138.5
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhcc
Q 010548 4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR 82 (507)
Q Consensus 4 m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 82 (507)
|........+||+++|++|||||||+++|++..+...+.++. ........+....+.+.+|||||++++......+++.
T Consensus 10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 89 (194)
T 2atx_A 10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM 89 (194)
T ss_dssp CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCC
Confidence 433333457899999999999999999999988766644433 3333334445556899999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC------------CccchhhhhHHHHHHhccc
Q 010548 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH------------NATSLEEVMGPIMQQFREI 150 (507)
Q Consensus 83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~ 150 (507)
+|++++|||++++.++..+...|+..++...+++|+++|+||+|+.... .+ ..+....++..++.
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~- 166 (194)
T 2atx_A 90 TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPI--CVEQGQKLAKEIGA- 166 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCC--CHHHHHHHHHHHTC-
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCccc--CHHHHHHHHHHcCC-
Confidence 9999999999999999999856999998877789999999999997641 22 33456677777764
Q ss_pred CcEEEeCcccCCCchHHHHHHHHHHcCC
Q 010548 151 ETCVECSATTMIQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 151 ~~~~~~SA~~g~gi~~l~~~i~~~i~~~ 178 (507)
.++++|||++|.||+++|++|.+.++.|
T Consensus 167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~p 194 (194)
T 2atx_A 167 CCYVECSALTQKGLKTVFDEAIIAILTP 194 (194)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHhcC
Confidence 2699999999999999999999887653
No 6
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.94 E-value=4.3e-26 Score=210.23 Aligned_cols=170 Identities=21% Similarity=0.346 Sum_probs=138.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
..+.+||+++|++|||||||+++|++..+...+.++... +.....+....+.+.+|||||++.+......+++.+|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 345799999999999999999999999876665443322 2233344456778899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
+|||++++.++..+...|...++...+++|+++|+||+|+..........+....++..++.. .+++|||++|.||+++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l 178 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCV-AYIEASSVAKIGLNEV 178 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCS-CEEECBTTTTBSHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCC-EEEEeecCCCCCHHHH
Confidence 999999999999986669999988877899999999999986422112455667777777642 4999999999999999
Q ss_pred HHHHHHHHcCCC
Q 010548 168 FYYAQKAVLHPT 179 (507)
Q Consensus 168 ~~~i~~~i~~~~ 179 (507)
|++|.+.+....
T Consensus 179 ~~~l~~~i~~~~ 190 (194)
T 3reg_A 179 FEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHCSC
T ss_pred HHHHHHHHHhcC
Confidence 999999886543
No 7
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.94 E-value=2.3e-26 Score=215.86 Aligned_cols=170 Identities=24% Similarity=0.283 Sum_probs=135.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
..++.+||+|+|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||+|++.+..++..+++.+|++
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 445689999999999999999999999988766444332 2233344556678999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEE
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCV 154 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 154 (507)
|+|||++++.++..+...|+..++...+++|+++|+||+|+..+ +.+ ..+....++..++. .+++
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~ 179 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPI--SYEQGCAIAKQLGA-EIYL 179 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCC--CHHHHHHHHHHHTC-SEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCcc--CHHHHHHHHHHcCC-CEEE
Confidence 99999999999999544599999988788999999999999763 333 44566777888764 2699
Q ss_pred EeCcccCCC-chHHHHHHHHHHcCCCC
Q 010548 155 ECSATTMIQ-VPDVFYYAQKAVLHPTA 180 (507)
Q Consensus 155 ~~SA~~g~g-i~~l~~~i~~~i~~~~~ 180 (507)
+|||++|.| |+++|+.|.+.+.....
T Consensus 180 e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 180 EGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred EeccCCCcccHHHHHHHHHHHHhccCc
Confidence 999999998 99999999998876543
No 8
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.94 E-value=6.7e-26 Score=207.48 Aligned_cols=160 Identities=18% Similarity=0.212 Sum_probs=130.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
..++.+||+|+|++|||||||+++|+++.+...+.++...+.....+....+.+.+|||+|++.+. +++.+|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 346689999999999999999999999998776655544344444555667889999999987765 788999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCC--CCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRG--DHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 163 (507)
+|||++++.+++.+.. |+..+.... .++|+++|+||+|+.. .+.+ ..+....++..++.. ++++|||++|.|
T Consensus 91 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v--~~~~~~~~~~~~~~~-~~~e~Sa~~~~g 166 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANPRVI--DDSRARKLSTDLKRC-TYYETCATYGLN 166 (184)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCS--CHHHHHHHHHHTTTC-EEEEEBTTTTBT
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccccc--CHHHHHHHHHHcCCC-eEEEecCCCCCC
Confidence 9999999999999886 999888753 4799999999999953 2333 445667788877633 799999999999
Q ss_pred chHHHHHHHHHHc
Q 010548 164 VPDVFYYAQKAVL 176 (507)
Q Consensus 164 i~~l~~~i~~~i~ 176 (507)
|+++|++|.+.+.
T Consensus 167 v~~lf~~l~~~i~ 179 (184)
T 3ihw_A 167 VERVFQDVAQKVV 179 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 9
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.94 E-value=4.7e-26 Score=208.23 Aligned_cols=166 Identities=25% Similarity=0.379 Sum_probs=133.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
....+||+++|++|||||||+++|++..+...+.++. ..++....+....+.+.+|||||++.+......+++.+|++|
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 4567999999999999999999999988765543322 233333445566789999999999999888899999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEEE
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVE 155 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (507)
+|||++++.+++.+...|...++...+++|+++|+||+|+... +.+ ..+....+++.++. .++++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~e 160 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV--SYDQGANMAKQIGA-ATYIE 160 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTC-SEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCC--CHHHHHHHHHHcCC-cEEEE
Confidence 9999999999999855699999887778999999999999753 222 33456677777763 27999
Q ss_pred eCcc-cCCCchHHHHHHHHHHcC
Q 010548 156 CSAT-TMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 156 ~SA~-~g~gi~~l~~~i~~~i~~ 177 (507)
|||+ +|.||+++|+.|.+.++.
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred eeecCCCcCHHHHHHHHHHHHhc
Confidence 9999 689999999999987753
No 10
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.94 E-value=5.3e-26 Score=206.85 Aligned_cols=168 Identities=24% Similarity=0.367 Sum_probs=125.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
++.+||+++|++|||||||+++++++.+...+.++. ........+....+.+.+|||||++.+...+..+++.+|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 456999999999999999999999988766544432 2222333444556788899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc--------cchhhhhHHHHHHhcccCcEEEeCccc
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--------TSLEEVMGPIMQQFREIETCVECSATT 160 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (507)
|||++++.+++.+...|...++...+++|+++|+||+|+...+.. ....+....++..++. .++++|||++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~ 164 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA-PAYIECSSKS 164 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC-SEEEECCTTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC-CEEEEEECCC
Confidence 999999999999986699999887778999999999999764321 0123445667777763 2799999999
Q ss_pred CCCchHHHHHHHHHHcCC
Q 010548 161 MIQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 161 g~gi~~l~~~i~~~i~~~ 178 (507)
|.|++++|+.|.+.++.|
T Consensus 165 ~~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 165 QENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp CTTHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999887653
No 11
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.94 E-value=1.2e-25 Score=205.08 Aligned_cols=167 Identities=25% Similarity=0.338 Sum_probs=135.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
++.+||+++|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||||++.+......+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 4679999999999999999999998887665444332 223334445567889999999999999888899999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC------------CccchhhhhHHHHHHhcccCcEEEe
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH------------NATSLEEVMGPIMQQFREIETCVEC 156 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (507)
|||++++.++..+...|+..++...+++|+++|+||+|+.... .+ ..+....++..++. .++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~~~ 159 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI--TYPQGLAMAKEIGA-VKYLEC 159 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCC--CHHHHHHHHHHTTC-SEEEEC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccC--CHHHHHHHHHhcCC-cEEEEe
Confidence 9999999999998856999998876789999999999997642 22 23445566666653 279999
Q ss_pred CcccCCCchHHHHHHHHHHcCCC
Q 010548 157 SATTMIQVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 157 SA~~g~gi~~l~~~i~~~i~~~~ 179 (507)
||++|.|++++|+.|.+.+..+.
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 160 SALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHSCCC
T ss_pred cCCCccCHHHHHHHHHHHHhccc
Confidence 99999999999999999887653
No 12
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.93 E-value=1.1e-25 Score=201.46 Aligned_cols=161 Identities=24% Similarity=0.332 Sum_probs=129.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
+.+||+++|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||||++.+......+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 568999999999999999999999887655444322 2223334455678999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
||++++.+++.+.. |...+... ..++|+++|+||+|+.+.+.+ ..+....++..++. .++++|||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVV--GKEQGQNLARQWCN-CAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTS-CEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECccccccccC--CHHHHHHHHHHccC-CcEEEecCCCCCCHHHH
Confidence 99999999999886 77776653 347999999999999765544 34455667776633 37999999999999999
Q ss_pred HHHHHHHH
Q 010548 168 FYYAQKAV 175 (507)
Q Consensus 168 ~~~i~~~i 175 (507)
+++|.+.+
T Consensus 158 ~~~l~~~i 165 (167)
T 1c1y_A 158 FYDLVRQI 165 (167)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 13
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.93 E-value=1.2e-25 Score=201.39 Aligned_cols=160 Identities=19% Similarity=0.178 Sum_probs=110.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D 91 (507)
.+||+++|++|||||||+++|++..+....++..........+....+.+.+|||+|++.+......+++.+|++++|||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 58999999999999999999998765433332222222334455667899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548 92 CNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 169 (507)
++++.+++.+.. |...+... ..++|+++|+||+|+...+.+ ..+....++..++. ++++|||++|.|++++|+
T Consensus 82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~~ 156 (166)
T 3q72_A 82 VTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREV--SVDEGRACAVVFDC--KFIETSAALHHNVQALFE 156 (166)
T ss_dssp TTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSSCCS--CHHHHHHHHHHTTC--EEEECBGGGTBSHHHHHH
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEecccccccccc--CHHHHHHHHHHhCC--cEEEeccCCCCCHHHHHH
Confidence 999999999887 77777664 347999999999999876655 34445666666663 799999999999999999
Q ss_pred HHHHHHc
Q 010548 170 YAQKAVL 176 (507)
Q Consensus 170 ~i~~~i~ 176 (507)
+|.+.+.
T Consensus 157 ~l~~~~~ 163 (166)
T 3q72_A 157 GVVRQIR 163 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988763
No 14
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.93 E-value=2.1e-25 Score=202.40 Aligned_cols=158 Identities=18% Similarity=0.171 Sum_probs=122.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
++.+||+++|++|||||||+++|+++.+....++..........+....+.+.+|||+|++. ..+++.+|++|+|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 46799999999999999999999999886633333322333344445568899999999875 5678999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc----CCCCcEEEEEecccCCC--CCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRG--DHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~----~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 163 (507)
||++++.+++.+.. |+..+... .+++|+++|+||+|+.. .+.+ ..+....++..++.. ++++|||++|.|
T Consensus 80 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v--~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 80 FSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV--GDARARALXADMKRC-SYYETXATYGLN 155 (178)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCS--CHHHHHHHHHHHSSE-EEEEEBTTTTBT
T ss_pred EECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccCcC--CHHHHHHHHHhhcCC-eEEEEeccccCC
Confidence 99999999999886 76555443 24799999999999953 2333 344556666666432 799999999999
Q ss_pred chHHHHHHHHHHc
Q 010548 164 VPDVFYYAQKAVL 176 (507)
Q Consensus 164 i~~l~~~i~~~i~ 176 (507)
++++|+.|.+.+.
T Consensus 156 i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 156 VDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 15
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.5e-25 Score=208.29 Aligned_cols=168 Identities=20% Similarity=0.270 Sum_probs=130.9
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhc
Q 010548 4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELK 81 (507)
Q Consensus 4 m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 81 (507)
+........+||+|+|++|||||||+++|++..+.....++.. ... ....+....+.+.+|||||++.+......+++
T Consensus 18 ~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 97 (201)
T 2ew1_A 18 GSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYR 97 (201)
T ss_dssp ----CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGST
T ss_pred CCccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHh
Confidence 3333445679999999999999999999999887654333222 111 22334445678999999999999988999999
Q ss_pred cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (507)
Q Consensus 82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (507)
.+|++|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....++...+. ++++|||++
T Consensus 98 ~~d~~i~v~D~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~ 172 (201)
T 2ew1_A 98 SANALILTYDITCEESFRCLPE-WLREIEQYASNKVITVLVGNKIDLAERREV--SQQRAEEFSEAQDM--YYLETSAKE 172 (201)
T ss_dssp TCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHTC--CEEECCTTT
T ss_pred cCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcCC--EEEEEeCCC
Confidence 9999999999999999999876 888887754 47999999999999765554 33445666666653 799999999
Q ss_pred CCCchHHHHHHHHHHc
Q 010548 161 MIQVPDVFYYAQKAVL 176 (507)
Q Consensus 161 g~gi~~l~~~i~~~i~ 176 (507)
|.||+++|++|.+.+.
T Consensus 173 g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 173 SDNVEKLFLDLACRLI 188 (201)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 16
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.93 E-value=2.4e-25 Score=199.13 Aligned_cols=162 Identities=20% Similarity=0.298 Sum_probs=128.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
++.+||+++|++|||||||+++|++..+...+.++... ......+....+.+.+|||||++++......+++.+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 35699999999999999999999998876555443332 22333444556789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.. ..+....++..++. +++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRADQWNV--NYVETSAKTRANVDK 156 (168)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCS--CHHHHHHHHHHHTC--EEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccccccCcc--CHHHHHHHHHHcCC--eEEEeCCCCCCCHHH
Confidence 999999999999876 887776653 37999999999999765554 33455666666663 799999999999999
Q ss_pred HHHHHHHHHc
Q 010548 167 VFYYAQKAVL 176 (507)
Q Consensus 167 l~~~i~~~i~ 176 (507)
+|++|.+.+.
T Consensus 157 l~~~l~~~i~ 166 (168)
T 1u8z_A 157 VFFDLMREIR 166 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 17
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.93 E-value=1.9e-25 Score=208.84 Aligned_cols=169 Identities=26% Similarity=0.384 Sum_probs=135.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
.+.+||+|+|++|||||||+++|+++.+...+.++. ..+.....+....+.+.+|||||++.+..++..+++.+|++|+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 467999999999999999999999988766644433 3333334455667899999999999999989999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc------cchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA------TSLEEVMGPIMQQFREIETCVECSATTMI 162 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 162 (507)
|||++++.+++.+...|+..++...+++|+++|+||+|+...... ....+....++..++. .++++|||++|.
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~g~ 165 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGA-AAYIECSSKTQQ 165 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC-SEEEECCTTTCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCC-ceEEEccCCCCC
Confidence 999999999999875699999887778999999999999764321 0123455667777763 279999999999
Q ss_pred CchHHHHHHHHHHcCCC
Q 010548 163 QVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 163 gi~~l~~~i~~~i~~~~ 179 (507)
||+++|++|.+.+....
T Consensus 166 gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 166 NVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp THHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHhhhh
Confidence 99999999999887653
No 18
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.93 E-value=2.9e-25 Score=202.42 Aligned_cols=164 Identities=16% Similarity=0.255 Sum_probs=133.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
...+.+||+|+|++|||||||+++|++..+...+.++... ......+....+.+.+|||||++.+......+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 3456899999999999999999999998876665443332 223334445567788999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc-cCCC
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT-TMIQ 163 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~-~g~g 163 (507)
++|||++++.+++.+.. |...+... ..++|+++|+||+|+...+.+ ..+....++..++. ++++|||+ +|.|
T Consensus 94 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKV--TRDQGKEMATKYNI--PYIETSAKDPPLN 168 (183)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCS--CHHHHHHHHHHHTC--CEEEEBCSSSCBS
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCCchhccCc--CHHHHHHHHHHhCC--eEEEeccCCCCCC
Confidence 99999999999999886 87777552 347999999999999876655 44556778888873 79999999 9999
Q ss_pred chHHHHHHHHHHc
Q 010548 164 VPDVFYYAQKAVL 176 (507)
Q Consensus 164 i~~l~~~i~~~i~ 176 (507)
++++|+.|.+.+.
T Consensus 169 v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 169 VDKTFHDLVRVIR 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988763
No 19
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.93 E-value=3.7e-25 Score=205.33 Aligned_cols=163 Identities=25% Similarity=0.389 Sum_probs=132.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
..+||+|+|++|||||||+++|.+..+...+.+ ..........+....+.+.+|||||++.+......+++.+|++++|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 103 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 103 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEE
Confidence 468999999999999999999999887655433 2223323334445567999999999999999899999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC------------CccchhhhhHHHHHHhcccCcEEEeC
Q 010548 90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH------------NATSLEEVMGPIMQQFREIETCVECS 157 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (507)
||++++.+++.+...|...++...+++|+++|+||+|+.... .+ ..+....++..++.. ++++||
T Consensus 104 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~-~~~~~S 180 (201)
T 2gco_A 104 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPV--RSEEGRDMANRISAF-GYLECS 180 (201)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCC--CHHHHHHHHHHTTCS-EEEECC
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcC--CHHHHHHHHHhCCCc-EEEEee
Confidence 999999999999666999998877789999999999997651 22 234455666666542 689999
Q ss_pred cccCCCchHHHHHHHHHHc
Q 010548 158 ATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 158 A~~g~gi~~l~~~i~~~i~ 176 (507)
|++|.||+++|++|.+.++
T Consensus 181 A~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999988764
No 20
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.93 E-value=3.6e-25 Score=203.16 Aligned_cols=163 Identities=18% Similarity=0.222 Sum_probs=132.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
....+||+|+|++|||||||+++|++..+.....++..... ....+....+.+.+|||||++.+......+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 34568999999999999999999999887655443332211 2233345578999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....+++.++. ++++|||++|.|++
T Consensus 99 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~ 173 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQD-WATQIKTYSWDNAQVILVGNKCDLEDERVV--PAEDGRRLADDLGF--EFFEASAKENINVK 173 (189)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccccccCC--CHHHHHHHHHHcCC--eEEEEECCCCCCHH
Confidence 99999999999999886 888887754 47999999999999765544 33456677777764 79999999999999
Q ss_pred HHHHHHHHHHc
Q 010548 166 DVFYYAQKAVL 176 (507)
Q Consensus 166 ~l~~~i~~~i~ 176 (507)
++|++|.+.+.
T Consensus 174 ~l~~~l~~~i~ 184 (189)
T 2gf9_A 174 QVFERLVDVIC 184 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988763
No 21
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=211.25 Aligned_cols=169 Identities=27% Similarity=0.367 Sum_probs=116.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
..+.+||+|+|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||||++.+...+..+++.+|+++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 34579999999999999999999999887655444332 22233344455678999999999999998999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc----------cchhhhhHHHHHHhcccCcEEEeC
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECS 157 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~S 157 (507)
+|||++++.+++.+...|+..++...+++|+++|+||+|+...... ....+....+++.++. .++++||
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGA-VAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-SEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCC-CEEEEec
Confidence 9999999999999976699999887778999999999999765310 0123445666777663 2699999
Q ss_pred cccCCCchHHHHHHHHHHcCC
Q 010548 158 ATTMIQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 158 A~~g~gi~~l~~~i~~~i~~~ 178 (507)
|++|.||+++|+.|.+.+...
T Consensus 190 A~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999887543
No 22
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.93 E-value=2.7e-25 Score=206.01 Aligned_cols=166 Identities=27% Similarity=0.373 Sum_probs=127.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
..+.+||+|+|++|||||||+++|++..+...+.++.. .+.....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 45689999999999999999999999887665544332 22223334445678899999999999998999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEEE
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVE 155 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (507)
+|||++++.++..+...|+..+....+++|+++|+||+|+... +.+ ..+....++..++. .++++
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~~ 173 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPV--PEEAAKLLAEEIKA-ASYIE 173 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTC-SEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccC--CHHHHHHHHHhcCC-cEEEE
Confidence 9999999999999975699999887778999999999999753 222 33456667777663 26999
Q ss_pred eCcccCCCchHHHHHHHHHHcC
Q 010548 156 CSATTMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 156 ~SA~~g~gi~~l~~~i~~~i~~ 177 (507)
|||++|.||+++|++|.+.+..
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999987753
No 23
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.93 E-value=3.7e-25 Score=200.41 Aligned_cols=163 Identities=23% Similarity=0.299 Sum_probs=132.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
....+||+|+|++|||||||+++|++..+...+.++.. .. .....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 44579999999999999999999999887665444332 21 12234445568999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
++|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....++..++. ++++|||++|.|++
T Consensus 92 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~ 166 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSS-WLTDARNLTNPNTVIILIGNKADLEAQRDV--TYEEAKQFAEENGL--LFLEASAKTGENVE 166 (179)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHH
T ss_pred EEEEeCcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCC--EEEEEeCCCCCCHH
Confidence 99999999999999886 888877654 58999999999999765544 33456667777663 79999999999999
Q ss_pred HHHHHHHHHHc
Q 010548 166 DVFYYAQKAVL 176 (507)
Q Consensus 166 ~l~~~i~~~i~ 176 (507)
++|++|.+.+.
T Consensus 167 ~l~~~l~~~i~ 177 (179)
T 1z0f_A 167 DAFLEAAKKIY 177 (179)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 24
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.93 E-value=4.5e-25 Score=199.19 Aligned_cols=162 Identities=23% Similarity=0.244 Sum_probs=119.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCcc--chhhhHHhhccCCEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLE--NKGKLNEELKRADAV 86 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~--~~~~~~~~~~~ad~i 86 (507)
.+.+||+|+|++|||||||+++|++..+....++..... .....+....+.+.+|||||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 356899999999999999999999988755444432222 12234445567899999999887 455667788999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 164 (507)
++|||++++.+++.+.. |...+... ..++|+++|+||+|+...+.+ . .+....++..++. ++++|||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v-~-~~~~~~~~~~~~~--~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKADLARCREV-S-VEEGRACAVVFDC--KFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHCC----CCEEEEEECTTCTTTCCS-C-HHHHHHHHHHHTS--EEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhhccCCCCEEEEEEChhhcccccc-C-HHHHHHHHHHcCC--eEEEEecCCCCCH
Confidence 99999999999999886 88877764 247999999999999876655 2 3445566666663 7999999999999
Q ss_pred hHHHHHHHHHHc
Q 010548 165 PDVFYYAQKAVL 176 (507)
Q Consensus 165 ~~l~~~i~~~i~ 176 (507)
+++|++|.+.+.
T Consensus 157 ~~l~~~l~~~~~ 168 (175)
T 2nzj_A 157 AELFEGVVRQLR 168 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988763
No 25
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.93 E-value=6.5e-25 Score=199.42 Aligned_cols=164 Identities=22% Similarity=0.263 Sum_probs=131.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
....+||+++|++|||||||+++|++..+.....++. .... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 4557999999999999999999999988765533322 2221 2233445568999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
|+|||++++.+++.+.. |+..+.... +++|+++|+||+|+...+.+ ..+....++...+. ++++|||++|.|++
T Consensus 89 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~ 163 (181)
T 2efe_B 89 IIVFDVTNQASFERAKK-WVQELQAQGNPNMVMALAGNKSDLLDARKV--TAEDAQTYAQENGL--FFMETSAKTATNVK 163 (181)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTTC--EEEECCSSSCTTHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCcccccccC--CHHHHHHHHHHcCC--EEEEEECCCCCCHH
Confidence 99999999999999886 888877653 47999999999999776554 33456667766653 69999999999999
Q ss_pred HHHHHHHHHHcC
Q 010548 166 DVFYYAQKAVLH 177 (507)
Q Consensus 166 ~l~~~i~~~i~~ 177 (507)
++|++|.+.+..
T Consensus 164 ~l~~~l~~~~~~ 175 (181)
T 2efe_B 164 EIFYEIARRLPR 175 (181)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999987643
No 26
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.93 E-value=1.2e-25 Score=209.28 Aligned_cols=166 Identities=23% Similarity=0.332 Sum_probs=131.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
..+.+||+++|++|||||||+++|+++.+.....++.. .......+....+.+.+|||||++.+......+++.+|+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 35679999999999999999999999887666444332 22233445566788889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc----------cchhhhhHHHHHHhcccCcEEEeC
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECS 157 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~S 157 (507)
+|||++++.+++.+...|...++...+++|+++|+||+|+...... ....+....+++.++.. ++++||
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV-KYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS-EEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCc-EEEEee
Confidence 9999999999999986699999888778999999999999765320 01234455666666642 699999
Q ss_pred cccCCCchHHHHHHHHHH
Q 010548 158 ATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 158 A~~g~gi~~l~~~i~~~i 175 (507)
|++|.||+++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 27
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.93 E-value=1.3e-25 Score=209.40 Aligned_cols=164 Identities=26% Similarity=0.379 Sum_probs=132.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
...+||+|+|++|||||||+++|++..+...+.++. ..++....+....+.+.+|||+|++.+......+++.+|++|+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 457999999999999999999999998866543322 2233334445667899999999999999888999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEEEe
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVEC 156 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (507)
|||++++.+++.+...|+..++...+++|+++|+||+|+... +.+ ..+....+++.++.. ++++|
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~-~~~e~ 182 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV--SYDQGANMAKQIGAA-TYIEC 182 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTCS-EEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCC--CHHHHHHHHHHcCCC-EEEEe
Confidence 999999999999855699999887778999999999999742 222 334566777777632 79999
Q ss_pred Ccc-cCCCchHHHHHHHHHHc
Q 010548 157 SAT-TMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 157 SA~-~g~gi~~l~~~i~~~i~ 176 (507)
||+ +|.||+++|+.|.+.++
T Consensus 183 SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHHHh
Confidence 999 68999999999988764
No 28
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.93 E-value=4.4e-25 Score=202.60 Aligned_cols=169 Identities=15% Similarity=0.203 Sum_probs=131.8
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee--eCCcccCC---------ceEEEEEeCCCCc
Q 010548 3 GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR--LPPDFYPD---------RVPVTIIDTSSSL 70 (507)
Q Consensus 3 ~m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t--~~~~~~~~---------~~~~~i~Dt~G~~ 70 (507)
+|+.+.....+||+|+|++|||||||+++|++..+.....++... +. ....+... .+.+.+|||||++
T Consensus 2 ~m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 81 (195)
T 3bc1_A 2 SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE 81 (195)
T ss_dssp ----CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred CCcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence 466555667899999999999999999999998876554333221 11 11122222 5799999999999
Q ss_pred cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc
Q 010548 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR 148 (507)
Q Consensus 71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 148 (507)
.+......+++.+|++|+|||++++.++..+.. |+..+.... .++|+++|+||+|+...+.+ ..+....++..++
T Consensus 82 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~ 158 (195)
T 3bc1_A 82 RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQMHAYSENPDIVLCGNKSDLEDQRAV--KEEEARELAEKYG 158 (195)
T ss_dssp GGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSSSSSCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccc--CHHHHHHHHHHcC
Confidence 999999999999999999999999999999875 888887654 47999999999999765444 3345666777766
Q ss_pred ccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548 149 EIETCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 149 ~~~~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
. ++++|||++|.|++++|++|.+.+.
T Consensus 159 ~--~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 159 I--PYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp C--CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred C--CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3 7999999999999999999988763
No 29
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.93 E-value=2.3e-25 Score=204.33 Aligned_cols=161 Identities=22% Similarity=0.256 Sum_probs=128.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
.+.+||+|+|++|||||||+++|+++.+...+.++.... .....+....+.+.+|||+|++.+... ..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il 97 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV 97 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence 457999999999999999999999998776655544322 233344556789999999999888764 679999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcC----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc-ccCCC
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA-TTMIQ 163 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA-~~g~g 163 (507)
|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....++..++. ++++||| ++|.|
T Consensus 98 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~Sa~~~g~g 172 (187)
T 3c5c_A 98 VYSVDSRQSFDSSSS-YLELLALHAKETQRSIPALLLGNKLDMAQYRQV--TKAEGVALAGRFGC--LFFEVSACLDFEH 172 (187)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHTC--EEEECCSSSCSHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHHhhccCCCCCEEEEEECcchhhcCcc--CHHHHHHHHHHcCC--cEEEEeecCcccc
Confidence 999999999999886 888877642 58999999999999765555 34556777777764 7999999 89999
Q ss_pred chHHHHHHHHHHc
Q 010548 164 VPDVFYYAQKAVL 176 (507)
Q Consensus 164 i~~l~~~i~~~i~ 176 (507)
|+++|+.|.+.+.
T Consensus 173 v~~lf~~l~~~i~ 185 (187)
T 3c5c_A 173 VQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 30
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.93 E-value=2.5e-25 Score=201.86 Aligned_cols=163 Identities=20% Similarity=0.232 Sum_probs=130.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
..+.+||+|+|++|||||||+++|++..+.....+.... .. ....+....+.+.+|||||.+.+......+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 456799999999999999999999998876543332221 11 2223334458899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
++|||++++.++..+.. |+..+....+++|+++|+||+|+...+.. ..+....++..++. ++++|||++|.|+++
T Consensus 86 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKR-WLHEINQNCDDVCRILVGNKNDDPERKVV--ETEDAYKFAGQMGI--QLFETSAKENVNVEE 160 (181)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHCTTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--CEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECCCCchhccc--CHHHHHHHHHHcCC--eEEEEECCCCCCHHH
Confidence 99999999999999876 99988887778999999999999876554 33455666776664 799999999999999
Q ss_pred HHHHHHHHHc
Q 010548 167 VFYYAQKAVL 176 (507)
Q Consensus 167 l~~~i~~~i~ 176 (507)
+|++|.+.+.
T Consensus 161 l~~~l~~~~~ 170 (181)
T 3tw8_B 161 MFNCITELVL 170 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 31
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.93 E-value=3.9e-25 Score=198.34 Aligned_cols=161 Identities=20% Similarity=0.241 Sum_probs=129.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
++.+||+++|++|||||||+++|+++.+.....++..... ....+....+.+.+|||||++.+......+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 4578999999999999999999999887655433322211 22334455789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
+|||++++.+++.+.. |+..+... .+++|+++|+||+|+...+.. ..+....++...+. +++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 84 VVYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLANKRAV--DFQEAQSYADDNSL--LFMETSAKTSMNVNE 158 (170)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCcccccc--CHHHHHHHHHHcCC--eEEEEeCCCCCCHHH
Confidence 9999999999999886 88777664 458999999999999765444 23445566666653 799999999999999
Q ss_pred HHHHHHHHH
Q 010548 167 VFYYAQKAV 175 (507)
Q Consensus 167 l~~~i~~~i 175 (507)
++++|.+.+
T Consensus 159 l~~~i~~~~ 167 (170)
T 1r2q_A 159 IFMAIAKKL 167 (170)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHHH
Confidence 999998765
No 32
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.93 E-value=5.1e-25 Score=202.56 Aligned_cols=165 Identities=19% Similarity=0.271 Sum_probs=130.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCC
Q 010548 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV-HAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (507)
Q Consensus 7 ~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~-~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (507)
......+||+|+|++|||||||+++|++..+.....++ ..... ....+....+.+.+|||||++.+...+..+++.+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 34456799999999999999999999998876553332 22222 22334445689999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548 85 AVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (507)
Q Consensus 85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 163 (507)
++|+|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+ ..+....++..++. ++++|||++|.|
T Consensus 96 ~ii~v~d~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~g 170 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTS-WLEDARQHSSSNMVIMLIGNKSDLESRRDV--KREEGEAFAREHGL--IFMETSAKTACN 170 (191)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEEECTTTCTT
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccCCcccc--CHHHHHHHHHHcCC--EEEEEeCCCCCC
Confidence 9999999999999999886 88888765 347999999999999765554 34456667777664 799999999999
Q ss_pred chHHHHHHHHHHc
Q 010548 164 VPDVFYYAQKAVL 176 (507)
Q Consensus 164 i~~l~~~i~~~i~ 176 (507)
|+++|++|.+.+.
T Consensus 171 i~~l~~~l~~~i~ 183 (191)
T 2a5j_A 171 VEEAFINTAKEIY 183 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 33
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.7e-25 Score=206.08 Aligned_cols=165 Identities=19% Similarity=0.329 Sum_probs=125.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (507)
.....+||+|+|++|||||||+++|++..+.....++.. ... ....+....+.+.+|||||++.+...+..+++.+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 344578999999999999999999999887655433222 111 223334456789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548 86 VVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (507)
Q Consensus 86 il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 164 (507)
+|+|||++++.+++.+.. |+..++... .++|+++|+||+|+...+.+ ..+....+++.+.. .++++|||++|.||
T Consensus 102 iilV~D~~~~~s~~~~~~-~~~~i~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~-~~~~~~SA~~g~gi 177 (192)
T 2il1_A 102 IILVYDITKKETFDDLPK-WMKMIDKYASEDAELLLVGNKLDCETDREI--TRQQGEKFAQQITG-MRFCEASAKDNFNV 177 (192)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTSTT-CEEEECBTTTTBSH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHhcCC-CeEEEEeCCCCCCH
Confidence 999999999999999875 888887754 37999999999999765554 23445666666433 27999999999999
Q ss_pred hHHHHHHHHHHc
Q 010548 165 PDVFYYAQKAVL 176 (507)
Q Consensus 165 ~~l~~~i~~~i~ 176 (507)
+++|++|.+.+.
T Consensus 178 ~~l~~~l~~~i~ 189 (192)
T 2il1_A 178 DEIFLKLVDDIL 189 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 34
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.93 E-value=5.1e-25 Score=197.73 Aligned_cols=162 Identities=21% Similarity=0.317 Sum_probs=131.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
.+.+||+++|++|||||||+++|++..+...+.++..... ....+......+.+|||||++.+......+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 4569999999999999999999999887655444332211 23344455688999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
+|||++++.+++.+.. |+..+... .++.|+++|+||+|+...+.+ ..+....++..++. +++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 84 IVYDITKEETFSTLKN-WVRELRQHGPPSIVVAIAGNKCDLTDVREV--MERDAKDYADSIHA--IFVETSAKNAININE 158 (170)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCTTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--EEEECBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECCcccccccc--CHHHHHHHHHHcCC--EEEEEeCCCCcCHHH
Confidence 9999999999999875 88888775 457999999999999865544 34456667766663 799999999999999
Q ss_pred HHHHHHHHHc
Q 010548 167 VFYYAQKAVL 176 (507)
Q Consensus 167 l~~~i~~~i~ 176 (507)
++++|.+.+.
T Consensus 159 l~~~i~~~i~ 168 (170)
T 1z0j_A 159 LFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9999988753
No 35
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.93 E-value=3.7e-25 Score=197.73 Aligned_cols=160 Identities=22% Similarity=0.311 Sum_probs=128.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
+.+||+++|++|||||||+++|+++.+...+.++.... .....+....+.+.+|||||++.+......+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 56899999999999999999999988766544433222 23334445567899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
||++++.+++.+.. |...+.... .++|+++|+||+|+...+.+ ..+....++..++. ++++|||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREV--SSSEGRALAEEWGC--PFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHTS--CEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcccccccC--CHHHHHHHHHHhCC--CEEEecCCCCcCHHHH
Confidence 99999999999886 766665532 47999999999999765554 33455667777663 7999999999999999
Q ss_pred HHHHHHHH
Q 010548 168 FYYAQKAV 175 (507)
Q Consensus 168 ~~~i~~~i 175 (507)
+++|.+.+
T Consensus 157 ~~~l~~~~ 164 (167)
T 1kao_A 157 FAEIVRQM 164 (167)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 36
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.93 E-value=2.7e-25 Score=206.37 Aligned_cols=165 Identities=17% Similarity=0.260 Sum_probs=128.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
....+||+|+|++|||||||+++|++..+.....++.. .. .....+....+.+.+|||||++++...+..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 34469999999999999999999999887554433221 22 12233344458999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....++..++. .++++|||++|.||+
T Consensus 106 ilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~~-~~~~~~SA~~g~gi~ 181 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPH-WIEDVRKYAGSNIVQLLIGNKSDLSELREV--SLAEAQSLAEHYDI-LCAIETSAKDSSNVE 181 (201)
T ss_dssp EEEEETTBHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC-SEEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCcccccccc--CHHHHHHHHHHcCC-CEEEEEeCCCCCCHH
Confidence 99999999999999885 888887754 57999999999999865554 33456667777663 268999999999999
Q ss_pred HHHHHHHHHHcC
Q 010548 166 DVFYYAQKAVLH 177 (507)
Q Consensus 166 ~l~~~i~~~i~~ 177 (507)
++|++|.+.+..
T Consensus 182 ~l~~~l~~~i~~ 193 (201)
T 2hup_A 182 EAFLRVATELIM 193 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988753
No 37
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.93 E-value=6.8e-25 Score=202.09 Aligned_cols=164 Identities=18% Similarity=0.249 Sum_probs=133.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
...+||+|+|++|||||||+++|++..+.....+...... ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 4578999999999999999999999887665443322111 22333444578999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ .......++..++. ++++|||++|.|+++
T Consensus 94 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTKKVV--DYTTAKEFADSLGI--PFLETSAKNATNVEQ 168 (196)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTTC--CEEEECTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECccccccccc--CHHHHHHHHHHcCC--cEEEEeCCCCCCHHH
Confidence 9999999999999886 888887653 47999999999999876655 33456677777764 799999999999999
Q ss_pred HHHHHHHHHcCC
Q 010548 167 VFYYAQKAVLHP 178 (507)
Q Consensus 167 l~~~i~~~i~~~ 178 (507)
+|++|.+.+...
T Consensus 169 l~~~l~~~i~~~ 180 (196)
T 3tkl_A 169 SFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887543
No 38
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.93 E-value=4.3e-25 Score=197.83 Aligned_cols=162 Identities=20% Similarity=0.270 Sum_probs=130.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
...+||+++|++|||||||+++|++..+.....++.. .. .....+....+.+.+|||||++++......+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 3578999999999999999999999887655443322 21 122333445679999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
+|||++++.+++.+.. |+..+.....+.|+++|+||+|+...+.+ ..+....++..++. +++++||++|.|++++
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~l 157 (168)
T 1z2a_A 83 LVFSTTDRESFEAISS-WREKVVAEVGDIPTALVQNKIDLLDDSCI--KNEEAEGLAKRLKL--RFYRTSVKEDLNVSEV 157 (168)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHHCSCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHTC--EEEECBTTTTBSSHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECcccCccccc--CHHHHHHHHHHcCC--eEEEEecCCCCCHHHH
Confidence 9999999999999886 88887765568999999999999765544 33455667777764 7999999999999999
Q ss_pred HHHHHHHHc
Q 010548 168 FYYAQKAVL 176 (507)
Q Consensus 168 ~~~i~~~i~ 176 (507)
+++|.+.+.
T Consensus 158 ~~~l~~~~~ 166 (168)
T 1z2a_A 158 FKYLAEKHL 166 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
No 39
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.93 E-value=3.3e-25 Score=201.60 Aligned_cols=164 Identities=17% Similarity=0.170 Sum_probs=133.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
+.+||+|+|++|||||||+++|+++.+...+.++..... ....+....+.+.+|||||++.+......+++.+|++++|
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v 84 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV 84 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEE
Confidence 568999999999999999999998887666555433322 2233444568899999999999988899999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
||++++.+++.+.. |...+.... .++|+++|+||+|+...+.+ ..+....++..++. +++++||++|.|++++
T Consensus 85 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~l 159 (181)
T 3t5g_A 85 YSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVI--SYEEGKALAESWNA--AFLESSAKENQTAVDV 159 (181)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTTCCS--CHHHHHHHHHHTTC--EEEECCTTSHHHHHHH
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhccee--cHHHHHHHHHHhCC--cEEEEecCCCCCHHHH
Confidence 99999999999986 887775542 37999999999999776655 44566777777764 7999999999999999
Q ss_pred HHHHHHHHcCCC
Q 010548 168 FYYAQKAVLHPT 179 (507)
Q Consensus 168 ~~~i~~~i~~~~ 179 (507)
|+.|.+.+....
T Consensus 160 ~~~l~~~~~~~~ 171 (181)
T 3t5g_A 160 FRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999886554
No 40
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=5.9e-25 Score=197.19 Aligned_cols=160 Identities=20% Similarity=0.277 Sum_probs=128.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT--RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
+.+||+++|++|||||||+++|++..+.....++.... .....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999988765543332221 1223344556799999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCC---CCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGD---HNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 164 (507)
|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.+ ..+....++...+. +++++||++|.|+
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi 156 (170)
T 1ek0_A 82 VYDVTKPQSFIKARH-WVKELHEQASKDIIIALVGNKIDXLQEGGERKV--AREEGEKLAEEKGL--LFFETSAKTGENV 156 (170)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCS--CHHHHHHHHHHHTC--EEEECCTTTCTTH
T ss_pred EEecCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCCccccccccCC--CHHHHHHHHHHcCC--EEEEEeCCCCCCH
Confidence 999999999999886 887776653 57999999999999765 333 33455666666653 7999999999999
Q ss_pred hHHHHHHHHHH
Q 010548 165 PDVFYYAQKAV 175 (507)
Q Consensus 165 ~~l~~~i~~~i 175 (507)
+++|++|.+.+
T Consensus 157 ~~l~~~l~~~i 167 (170)
T 1ek0_A 157 NDVFLGIGEKI 167 (170)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 41
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.93 E-value=5.7e-25 Score=200.60 Aligned_cols=163 Identities=21% Similarity=0.310 Sum_probs=130.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
.++.+||+|+|++|||||||+++|++..+...+.++.... .....+....+.+.+|||||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 4567999999999999999999999988766554433322 222344455678999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
+|||++++.++..+.. |+..+.... .++|+++|+||+|+...+.+ ..+....+++.++. ++++|||++|.|++
T Consensus 95 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 95 CVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWNV--NYVETSAKTRANVD 169 (187)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHHCCTTCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccCcc--CHHHHHHHHHHcCC--eEEEeCCCCCCCHH
Confidence 9999999999999876 877776653 37999999999999765544 33455666666663 79999999999999
Q ss_pred HHHHHHHHHHc
Q 010548 166 DVFYYAQKAVL 176 (507)
Q Consensus 166 ~l~~~i~~~i~ 176 (507)
++|++|.+.+.
T Consensus 170 ~l~~~l~~~i~ 180 (187)
T 2a9k_A 170 KVFFDLMREIR 180 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988763
No 42
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=5.2e-25 Score=202.78 Aligned_cols=164 Identities=19% Similarity=0.261 Sum_probs=132.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
..+.+||+|+|++|||||||+++|++..+...+.++..... ....+....+.+.+|||||++.+......+++.+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 35579999999999999999999999887655444332221 2234445678999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....+++.++. ++++|||++|.|++
T Consensus 100 ilV~d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKK-WVKELKEHGPENIVMAIAGNKCDLSDIREV--PLKDAKEYAESIGA--IVVETSAKNAINIE 174 (192)
T ss_dssp EEEEETTCTHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTTTC--EEEECBTTTTBSHH
T ss_pred EEEEeCCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCC--EEEEEeCCCCcCHH
Confidence 99999999999999876 888887764 47999999999999764444 33456677777763 79999999999999
Q ss_pred HHHHHHHHHHcC
Q 010548 166 DVFYYAQKAVLH 177 (507)
Q Consensus 166 ~l~~~i~~~i~~ 177 (507)
+++++|.+.+..
T Consensus 175 ~l~~~l~~~i~~ 186 (192)
T 2fg5_A 175 ELFQGISRQIPP 186 (192)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999987643
No 43
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.93 E-value=2.4e-25 Score=209.73 Aligned_cols=172 Identities=16% Similarity=0.264 Sum_probs=136.1
Q ss_pred CCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHH
Q 010548 1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNE 78 (507)
Q Consensus 1 m~~m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 78 (507)
|.+|........+||+|+|++|||||||+++|+.+.+...+.++..... ....+....+.+.+|||||++.+......
T Consensus 4 ~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 83 (221)
T 3gj0_A 4 MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 83 (221)
T ss_dssp --CCSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHH
T ss_pred cccccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHH
Confidence 4456666677789999999999999999999776665444333222111 33344556789999999999999999999
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (507)
Q Consensus 79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (507)
+++.+|++|+|||++++.++..+.. |+..+.....++|+++|+||+|+.+.... .....++...+. ++++|||
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~~--~~~~~Sa 156 (221)
T 3gj0_A 84 YYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHRKKNL--QYYDISA 156 (221)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHH-HHHHHHHHSTTCCEEEEEECTTSSSCSSC----GGGCCHHHHHTC--EEEECBG
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECCcccccccc----HHHHHHHHHcCC--EEEEEeC
Confidence 9999999999999999999999886 99998887778999999999999765433 234455555553 7999999
Q ss_pred ccCCCchHHHHHHHHHHcCCC
Q 010548 159 TTMIQVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 159 ~~g~gi~~l~~~i~~~i~~~~ 179 (507)
++|.||+++|++|.+.+....
T Consensus 157 ~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 157 KSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp GGTBTTTHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHHHHHhCc
Confidence 999999999999999886543
No 44
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.93 E-value=1e-24 Score=202.53 Aligned_cols=163 Identities=21% Similarity=0.310 Sum_probs=133.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
.++.+||+|+|++|||||||+++|++..+...+.++.... .....+....+.+.+|||||++.+......+++.+|+++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 4567999999999999999999999988766655443322 233344455678999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcCC--CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLEI--KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~--~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
+|||++++.++..+.. |+..+..... ++|+++|+||+|+...+.+ ..+....++..++. +++++||++|.||+
T Consensus 91 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~ 165 (206)
T 2bov_A 91 CVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWNV--NYVETSAKTRANVD 165 (206)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccCccccccc--cHHHHHHHHHHhCC--eEEEEeCCCCCCHH
Confidence 9999999999999876 8888776543 7999999999999875554 33455666666663 79999999999999
Q ss_pred HHHHHHHHHHc
Q 010548 166 DVFYYAQKAVL 176 (507)
Q Consensus 166 ~l~~~i~~~i~ 176 (507)
++|++|.+.+.
T Consensus 166 ~l~~~l~~~i~ 176 (206)
T 2bov_A 166 KVFFDLMREIR 176 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998774
No 45
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.93 E-value=4.8e-25 Score=198.06 Aligned_cols=162 Identities=17% Similarity=0.253 Sum_probs=124.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
.+.+||+++|++|||||||+++|++..+.....++.. ... ....+....+.+.+|||||++.+......+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 4579999999999999999999999887655433322 222 23344556788999999999988888888999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
+|||++++.+++.+.. |+..++... .++|+++|+||+|+...+.+ ..+....+++.++. +++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 84 LVYDITDEDSFQKVKN-WVKELRKMLGNEICLCIVGNKIDLEKERHV--SIQEAESYAESVGA--KHYHTSAKQNKGIEE 158 (170)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHHGGGSEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEEEBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECccccccccc--CHHHHHHHHHHcCC--eEEEecCCCCCCHHH
Confidence 9999999999999885 888776643 47999999999999775554 33456667777763 799999999999999
Q ss_pred HHHHHHHHHc
Q 010548 167 VFYYAQKAVL 176 (507)
Q Consensus 167 l~~~i~~~i~ 176 (507)
+|++|.+.+.
T Consensus 159 l~~~l~~~~~ 168 (170)
T 1z08_A 159 LFLDLCKRMI 168 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 46
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.93 E-value=6.1e-25 Score=203.04 Aligned_cols=165 Identities=19% Similarity=0.212 Sum_probs=127.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCC-eeeCCcccCCceEEEEEeCCCCccchh-hhHHhhccCCE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKG-KLNEELKRADA 85 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~ 85 (507)
....+||+|+|++|||||||+++|++..+... .++.... ......++...+.+.+|||+|++.+.. +...+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 34579999999999999999999986543222 2222222 222334455578899999999987765 66788999999
Q ss_pred EEEEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548 86 VVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (507)
Q Consensus 86 il~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 163 (507)
+|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....++..++. ++++|||++|.|
T Consensus 100 ~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~a~~~~~--~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREV--SLEEGRHLAGTLSC--KHIETSAALHHN 174 (195)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTTCCS--CHHHHHHHHHHTTC--EEEEEBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhccccCCc--CHHHHHHHHHHhCC--EEEEEcCCCCCC
Confidence 999999999999999886 888887653 37999999999999876555 33455667777763 799999999999
Q ss_pred chHHHHHHHHHHcCC
Q 010548 164 VPDVFYYAQKAVLHP 178 (507)
Q Consensus 164 i~~l~~~i~~~i~~~ 178 (507)
|+++|+.|.+.+...
T Consensus 175 v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 175 TRELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887543
No 47
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=2.3e-25 Score=206.63 Aligned_cols=166 Identities=18% Similarity=0.190 Sum_probs=131.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
..+.+||+|+|++|||||||+++|++..+...+.++... ......+....+.+.+|||||++.+......+++.+|+++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 346799999999999999999999999877665443322 2233344456789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
+|||++++.+++.+.. |...+... ..++|+++|+||+|+...+.+ .......++..++. ++++|||++|.||+
T Consensus 101 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~ 175 (201)
T 3oes_A 101 LVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVGNKADLSPEREV--QAVEGKKLAESWGA--TFMESSARENQLTQ 175 (201)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHC-----CCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEECCTTCHHHHH
T ss_pred EEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccCcccccc--CHHHHHHHHHHhCC--eEEEEeCCCCCCHH
Confidence 9999999999999986 88887664 247899999999999876555 34456677777764 79999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 010548 166 DVFYYAQKAVLHPT 179 (507)
Q Consensus 166 ~l~~~i~~~i~~~~ 179 (507)
++|+.|.+.+....
T Consensus 176 ~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 176 GIFTKVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999876543
No 48
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.92 E-value=2.6e-25 Score=201.54 Aligned_cols=165 Identities=20% Similarity=0.195 Sum_probs=128.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCee-eCCcccC-CceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTR-LPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADA 85 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t-~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (507)
..+.+||+|+|++|||||||+++|++..+...+.++. .... ....+.. ..+.+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 3567999999999999999999999988654432222 1221 2223322 25899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhHHHHHHhcC---CCCc-EEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548 86 VVLTYACNQQSTLSRLSSYWLPELRRLE---IKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (507)
Q Consensus 86 il~V~D~~~~~s~~~~~~~~~~~l~~~~---~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 161 (507)
+++|||++++.+++.+.. |+..+.... .+.| +++|+||+|+...+.+ ..+....++..++. ++++|||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALVGNKIDLEHMRTI--KPEKHLRFCQENGF--SSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHTC--EEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHHhcccCCCCeEEEEEEcccccccccc--CHHHHHHHHHHcCC--cEEEEeCCCC
Confidence 999999999999998875 888877632 1455 8999999999765544 33455667777663 7999999999
Q ss_pred CCchHHHHHHHHHHcCC
Q 010548 162 IQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 162 ~gi~~l~~~i~~~i~~~ 178 (507)
.||+++|++|.+.+...
T Consensus 158 ~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGI 174 (178)
T ss_dssp TTHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999987543
No 49
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.92 E-value=4.4e-25 Score=198.26 Aligned_cols=160 Identities=19% Similarity=0.214 Sum_probs=118.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCC-C-CCCCCeeeCCcccCCceEEEEEeCCCCccchh-hhHHhhccCCEEEE
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKV-P-PVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-KLNEELKRADAVVL 88 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~il~ 88 (507)
.+||+++|++|||||||+++|++..+.... + +..........+....+.+.+|||+|++.+.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 479999999999999999999977654332 2 22222223344555678899999999988776 56677899999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCC--CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEI--KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~--~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
|||++++.+++.+.. |+..+..... ++|+++|+||+|+.+.+.+ ..+....+++.++. ++++|||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREV--SLEEGRHLAGTLSC--KHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--EEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhcccC--CHHHHHHHHHHcCC--cEEEecCccCCCHHH
Confidence 999999999999986 7777766543 7999999999999866555 34556677777764 799999999999999
Q ss_pred HHHHHHHHHc
Q 010548 167 VFYYAQKAVL 176 (507)
Q Consensus 167 l~~~i~~~i~ 176 (507)
+|+.|.+.+.
T Consensus 157 l~~~l~~~i~ 166 (169)
T 3q85_A 157 LFEGAVRQIR 166 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 50
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=9e-25 Score=203.72 Aligned_cols=166 Identities=23% Similarity=0.360 Sum_probs=130.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
+..+||+|+|++|||||||+++|++..+...+.++.. .......+....+.+.+|||||++.+......+++.+|++|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 3468999999999999999999999887655433322 222223444456789999999999999888999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC------------CccchhhhhHHHHHHhcccCcEEEe
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH------------NATSLEEVMGPIMQQFREIETCVEC 156 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (507)
|||++++.+++.+...|...++...+++|+++|+||+|+.... .+ ..+....++..++. .++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~~~ 179 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPV--RTDDGRAMAVRIQA-YDYLEC 179 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCC--CHHHHHHHHHHTTC-SEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCC--CHHHHHHHHHhcCC-CEEEEe
Confidence 9999999999999666999998877789999999999997641 12 23344556666653 268999
Q ss_pred CcccCCCchHHHHHHHHHHcCC
Q 010548 157 SATTMIQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 157 SA~~g~gi~~l~~~i~~~i~~~ 178 (507)
||++|.||+++|++|.+.++.+
T Consensus 180 SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSC
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 51
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.92 E-value=8.4e-25 Score=201.30 Aligned_cols=163 Identities=18% Similarity=0.201 Sum_probs=130.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-e-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-T-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
....+||+|+|++|||||||+++|++..+.....++... . +....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 445799999999999999999999998876554332221 1 13334445678999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
|+|||++++.++..+.. |+..+.... .++|+++|+||+|+...+.+ ..+....++...+. ++++|||++|.|++
T Consensus 102 i~v~D~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVER-WLKELYDHAEATIVVMLVGNKSDLSQAREV--PTEEARMFAENNGL--LFLETSALDSTNVE 176 (193)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHTTSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEEECTTTCTTHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECCCccccccc--CHHHHHHHHHHcCC--EEEEEeCCCCCCHH
Confidence 99999999999998886 888887653 47999999999999765544 33445666666653 79999999999999
Q ss_pred HHHHHHHHHHc
Q 010548 166 DVFYYAQKAVL 176 (507)
Q Consensus 166 ~l~~~i~~~i~ 176 (507)
++|++|.+.+.
T Consensus 177 ~l~~~l~~~i~ 187 (193)
T 2oil_A 177 LAFETVLKEIF 187 (193)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 52
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.92 E-value=9.5e-25 Score=198.08 Aligned_cols=163 Identities=18% Similarity=0.238 Sum_probs=130.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
..+.+||+|+|++|||||||+++|++..+...+.++.... .....+....+.+.+|||||++++......+++.+|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 4567999999999999999999999988766655433322 222333444578999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHH-Hhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 88 LTYACNQQSTLSRLSSYWLPEL-RRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l-~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
+|||++++.++..+.. |+..+ +.. ..++|+++|+||+|+...+.+ ..+....++...+. ++++|||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~gv~ 160 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQV--PRSEASAFGASHHV--AYFEASAKLRLNVD 160 (181)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEECBTTTTBSHH
T ss_pred EEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccc--CHHHHHHHHHHcCC--eEEEecCCCCCCHH
Confidence 9999999999999886 77766 333 347999999999999775554 23445566666653 79999999999999
Q ss_pred HHHHHHHHHHc
Q 010548 166 DVFYYAQKAVL 176 (507)
Q Consensus 166 ~l~~~i~~~i~ 176 (507)
++|++|.+.+.
T Consensus 161 ~l~~~l~~~~~ 171 (181)
T 2fn4_A 161 EAFEQLVRAVR 171 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998774
No 53
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.92 E-value=1.5e-24 Score=201.24 Aligned_cols=162 Identities=15% Similarity=0.213 Sum_probs=132.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
...+||+|+|++|||||||+++|++..+...+.++..... ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 3568999999999999999999999887665444332111 22333455789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....++..++. ++++|||++|.|+++
T Consensus 86 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~ 160 (203)
T 1zbd_A 86 LMYDITNEESFNAVQD-WSTQIKTYSWDNAQVLLVGNKCDMEDERVV--SSERGRQLADHLGF--EFFEASAKDNINVKQ 160 (203)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCSSCEEEEEEECTTCTTSCCS--CHHHHHHHHHHHTC--EEEECBTTTTBSSHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccCccccc--CHHHHHHHHHHCCC--eEEEEECCCCCCHHH
Confidence 9999999999999886 888887754 47999999999999876554 34556677777764 799999999999999
Q ss_pred HHHHHHHHHc
Q 010548 167 VFYYAQKAVL 176 (507)
Q Consensus 167 l~~~i~~~i~ 176 (507)
+|++|.+.+.
T Consensus 161 l~~~l~~~i~ 170 (203)
T 1zbd_A 161 TFERLVDVIC 170 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 54
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=8.3e-25 Score=204.48 Aligned_cols=163 Identities=22% Similarity=0.249 Sum_probs=122.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCcc-chhhhHHhhccCC
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLE-NKGKLNEELKRAD 84 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~--~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad 84 (507)
....+||+|+|++|||||||+++|++.. +...++++...+ .....++...+.+.+|||+|... +..+...+++.+|
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 3456999999999999999999999754 233334433332 23334445567889999999876 4445566788999
Q ss_pred EEEEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548 85 AVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (507)
Q Consensus 85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 162 (507)
++|+|||++++.+|+.+.. |...+.+. ..++|+|+|+||+|+...+.+ . .+....++..++. ++++|||++|.
T Consensus 114 ~~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~r~v-~-~~e~~~~a~~~~~--~~~e~SAk~g~ 188 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREV-S-VSEGRACAVVFDC--KFIETSAAVQH 188 (211)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCS-C-HHHHHHHHHHHTC--EEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcCceE-e-HHHHHHHHHHcCC--EEEEEeCCCCC
Confidence 9999999999999999886 88777653 247999999999999765555 2 3344556666653 79999999999
Q ss_pred CchHHHHHHHHHHc
Q 010548 163 QVPDVFYYAQKAVL 176 (507)
Q Consensus 163 gi~~l~~~i~~~i~ 176 (507)
||+++|+.|.+.+.
T Consensus 189 ~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 189 NVKELFEGIVRQVR 202 (211)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998763
No 55
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.5e-24 Score=196.76 Aligned_cols=165 Identities=19% Similarity=0.267 Sum_probs=124.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCC-CCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCC
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVH-APTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~-~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (507)
...+.+||+++|++|||||||+++|++..+... +.++. .... ....+....+.+.+|||||++.+...+..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 345679999999999999999999999887432 22222 2211 11233445678999999999999888889999999
Q ss_pred EEEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548 85 AVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (507)
Q Consensus 85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 163 (507)
++++|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....+++.++. ++++|||++|.|
T Consensus 86 ~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~g 160 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQA-WLTEIHEYAQHDVALMLLGNKVDSAHERVV--KREDGEKLAKEYGL--PFMETSAKTGLN 160 (180)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECCSTTSCCCS--CHHHHHHHHHHHTC--CEEECCTTTCTT
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccCccccc--CHHHHHHHHHHcCC--eEEEEeCCCCCC
Confidence 9999999999999999876 888887754 47999999999999876554 33455667776663 799999999999
Q ss_pred chHHHHHHHHHHcC
Q 010548 164 VPDVFYYAQKAVLH 177 (507)
Q Consensus 164 i~~l~~~i~~~i~~ 177 (507)
++++|++|.+.+..
T Consensus 161 i~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 161 VDLAFTAIAKELKR 174 (180)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 56
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=7.3e-25 Score=196.96 Aligned_cols=161 Identities=20% Similarity=0.240 Sum_probs=127.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
+.+||+++|++|||||||+++|+++.+...+.++....+ .........+.+.+|||||++++......+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 458999999999999999999999887655444433332 2233344567899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc---CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~---~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
||++++.+++.+.. |...+.+. .+++|+++|+||+|+...+.+ .......++..++. +++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREV--QSSEAEALARTWKC--AFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHTC--EEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEcccccccccc--CHHHHHHHHHHhCC--eEEEecCCCCcCHHH
Confidence 99999999988876 76666653 247999999999999765554 23345556666653 799999999999999
Q ss_pred HHHHHHHHHc
Q 010548 167 VFYYAQKAVL 176 (507)
Q Consensus 167 l~~~i~~~i~ 176 (507)
++++|.+.+.
T Consensus 157 l~~~l~~~~~ 166 (172)
T 2erx_A 157 LFQELLNLEK 166 (172)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 57
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.92 E-value=8.9e-25 Score=197.87 Aligned_cols=162 Identities=18% Similarity=0.251 Sum_probs=128.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
+++.+||+|+|++|||||||+++|++..+.....+... .. .....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999998887655433222 11 12233344567899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
++|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+ ..+....++...+. ++++|||++|.|++
T Consensus 91 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSK-WIDDVRTERGSDVIIMLVGNKTDLSDKRQV--STEEGERKAKELNV--MFIETSAKAGYNVK 165 (179)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECGGGGGGCCS--CHHHHHHHHHHHTC--EEEEEBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCcccccCcC--CHHHHHHHHHHcCC--eEEEEeCCCCCCHH
Confidence 99999999999998876 87777654 347999999999999765554 23445556666653 79999999999999
Q ss_pred HHHHHHHHHH
Q 010548 166 DVFYYAQKAV 175 (507)
Q Consensus 166 ~l~~~i~~~i 175 (507)
+++++|.+.+
T Consensus 166 ~l~~~l~~~~ 175 (179)
T 2y8e_A 166 QLFRRVAAAL 175 (179)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 58
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.92 E-value=2.3e-24 Score=200.59 Aligned_cols=163 Identities=17% Similarity=0.270 Sum_probs=131.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
....+||+|+|++|||||||+++|++..+...+.++. .... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 3557999999999999999999999988765543322 2222 2233444567899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
|+|||++++.++..+.. |+..+.... .++|+++|+||+|+...+.+ ..+....++...+. +++++||++|.||+
T Consensus 85 ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKM-WLQEIDRYATSTVLKLLVGNKCDLKDKRVV--EYDVAKEFADANKM--PFLETSALDSTNVE 159 (206)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTTC--CEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcCC--eEEEEeCCCCCCHH
Confidence 99999999999999886 888887653 47999999999999876554 33455666666663 79999999999999
Q ss_pred HHHHHHHHHHc
Q 010548 166 DVFYYAQKAVL 176 (507)
Q Consensus 166 ~l~~~i~~~i~ 176 (507)
++|++|.+.+.
T Consensus 160 ~l~~~l~~~i~ 170 (206)
T 2bcg_Y 160 DAFLTMARQIK 170 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998774
No 59
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.92 E-value=1.8e-24 Score=195.79 Aligned_cols=164 Identities=21% Similarity=0.266 Sum_probs=126.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
....+||+++|++|||||||+++|++..+.....++..... ....+....+.+.+|||||++.+......+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 34579999999999999999999999887655433322111 2223344457999999999999999899999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhcC-----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 161 (507)
++|||++++.+++.+.. |...+.... .++|+++|+||+|+.. +.. ..+....++..... .++++|||++|
T Consensus 84 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~ 158 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDISE-RQV--STEEAQAWCRDNGD-YPYFETSAKDA 158 (177)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSS--CHHHHHHHHHHTTC-CCEEECCTTTC
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHHccccccCCCcEEEEEECCcccc-ccc--CHHHHHHHHHhcCC-ceEEEEeCCCC
Confidence 99999999999999875 888776532 4789999999999973 333 23445556653433 27999999999
Q ss_pred CCchHHHHHHHHHHcC
Q 010548 162 IQVPDVFYYAQKAVLH 177 (507)
Q Consensus 162 ~gi~~l~~~i~~~i~~ 177 (507)
.|++++|++|.+.+..
T Consensus 159 ~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 159 TNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988764
No 60
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.92 E-value=1.2e-24 Score=201.02 Aligned_cols=165 Identities=18% Similarity=0.224 Sum_probs=121.6
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccC
Q 010548 5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83 (507)
Q Consensus 5 ~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 83 (507)
..+......||+|+|++|||||||+++|++..+.. .+.++...... .+....+.+.+|||||++.+...+..+++.+
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEKGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 33445668999999999999999999999998876 44443332221 2346688999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHhHHHHHHhc------C---CCCcEEEEEecccCCCCCCccchhhhhHHHH-----HHhcc
Q 010548 84 DAVVLTYACNQQSTLSRLSSYWLPELRRL------E---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-----QQFRE 149 (507)
Q Consensus 84 d~il~V~D~~~~~s~~~~~~~~~~~l~~~------~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-----~~~~~ 149 (507)
|++|+|||++++.++..+.. |+..+... . .++|+++|+||+|+...... .+....+. ...+
T Consensus 88 d~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~- 162 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKS-EIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA---AELVEILDLTTLMGDHP- 162 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHH-HHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH---HHHHHHHTHHHHHTTSC-
T ss_pred CEEEEEEECCcHHHHHHHHH-HHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH---HHHHHHhcchhhccCCe-
Confidence 99999999999999999986 66655432 1 27999999999999875332 11111111 2222
Q ss_pred cCcEEEeCcccCCCchHHHHHHHHHHcC
Q 010548 150 IETCVECSATTMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 150 ~~~~~~~SA~~g~gi~~l~~~i~~~i~~ 177 (507)
.++++|||++|.||+++|++|.+.+..
T Consensus 163 -~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 163 -FVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp -EEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred -eEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 278999999999999999999987743
No 61
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=201.36 Aligned_cols=163 Identities=18% Similarity=0.271 Sum_probs=124.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
..+.+||+|+|++|||||||+++|++..+...+.++.. .. .....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 34579999999999999999999999887554333222 11 12334445568899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCC------CCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRG------DHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
|+|||++++.+++.+.. |+..++... .++|+++|+||+|+.. .+.+ ..+....++..++. ++++|||+
T Consensus 105 ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v--~~~~~~~~~~~~~~--~~~~~SA~ 179 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIRE-WVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCV--PGHFGEKLAMTYGA--LFCETSAK 179 (199)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCC--CHHHHHHHHHHHTC--EEEECCTT
T ss_pred EEEEECCChHHHHHHHH-HHHHHHHhcCCCCCEEEEEECccccccccccccccc--CHHHHHHHHHHcCC--eEEEeeCC
Confidence 99999999999999886 888887653 4799999999999962 2333 34455667777664 79999999
Q ss_pred cCCCchHHHHHHHHHHc
Q 010548 160 TMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i~ 176 (507)
+|.||+++|++|.+.+.
T Consensus 180 ~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 180 DGSNIVEAVLHLAREVK 196 (199)
T ss_dssp TCTTHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998774
No 62
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2e-25 Score=205.25 Aligned_cols=162 Identities=17% Similarity=0.222 Sum_probs=132.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
...+||+|+|++|||||||+++|++..+.....++.. .. .....+....+.+.+|||||++.+......+++.+|++|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 3468999999999999999999999887655333221 11 133344566789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....++..++. ++++|||++|.||++
T Consensus 101 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 101 LMYDITNEESFNAVQD-WATQIKTYSWDNAQVILVGNKCDMEEERVV--PTEKGQLLAEQLGF--DFFEASAKENISVRQ 175 (191)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEECBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcCC--eEEEEECCCCCCHHH
Confidence 9999999999999886 998888754 57999999999999766554 34556677777764 799999999999999
Q ss_pred HHHHHHHHHc
Q 010548 167 VFYYAQKAVL 176 (507)
Q Consensus 167 l~~~i~~~i~ 176 (507)
+|++|.+.+.
T Consensus 176 l~~~l~~~i~ 185 (191)
T 3dz8_A 176 AFERLVDAIC 185 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 63
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.6e-24 Score=200.11 Aligned_cols=161 Identities=20% Similarity=0.303 Sum_probs=129.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
.+.+||+|+|++|||||||+++|++..+...+.++... ......+....+.+.+|||||++. ......+++.+|++++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL 104 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence 56799999999999999999999998876665443332 222234445578899999999887 6777889999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC-Cch
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI-QVP 165 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~-gi~ 165 (507)
|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+ ..+....++..++. ++++|||++|. |++
T Consensus 105 v~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~g~~gi~ 179 (196)
T 2atv_A 105 VYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQV--STEEGEKLATELAC--AFYECSACTGEGNIT 179 (196)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHTS--EEEECCTTTCTTCHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHHhhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHhCC--eEEEECCCcCCcCHH
Confidence 999999999999886 88777653 247999999999999775554 33455667777653 79999999999 999
Q ss_pred HHHHHHHHHHc
Q 010548 166 DVFYYAQKAVL 176 (507)
Q Consensus 166 ~l~~~i~~~i~ 176 (507)
++|++|.+.+.
T Consensus 180 ~l~~~l~~~i~ 190 (196)
T 2atv_A 180 EIFYELCREVR 190 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 64
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.92 E-value=3.5e-25 Score=201.83 Aligned_cols=162 Identities=15% Similarity=0.279 Sum_probs=102.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
...+||+|+|++|||||||+++|++..+.....++.. ... ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4579999999999999999999998876544222111 111 22233344589999999999998888889999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
+|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+ ..+....++..++. ++++|||++|.||++
T Consensus 86 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~ 160 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRN-WIRNIEEHASADVEKMILGNKCDVNDKRQV--SKERGEKLALDYGI--KFMETSAKANINVEN 160 (183)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEEC--CCSCCCS--CHHHHHHHHHHHTC--EEEECCC---CCHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECccCCccCcC--CHHHHHHHHHHcCC--eEEEEeCCCCCCHHH
Confidence 9999999999999886 88888765 347999999999999876554 34456677777763 799999999999999
Q ss_pred HHHHHHHHHc
Q 010548 167 VFYYAQKAVL 176 (507)
Q Consensus 167 l~~~i~~~i~ 176 (507)
+|++|.+.+.
T Consensus 161 l~~~l~~~i~ 170 (183)
T 2fu5_C 161 AFFTLARDIK 170 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 65
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.92 E-value=1.6e-24 Score=198.72 Aligned_cols=162 Identities=19% Similarity=0.323 Sum_probs=126.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccch-hhhHHhhccCCE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENK-GKLNEELKRADA 85 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~ad~ 85 (507)
.++.+||+|+|++|||||||+++|+++.+.....++.. ... ....+....+.+.+|||||++.+. ..+..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 34579999999999999999999999887655433222 221 223344456899999999998887 788899999999
Q ss_pred EEEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC--
Q 010548 86 VVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM-- 161 (507)
Q Consensus 86 il~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-- 161 (507)
+|+|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+ ..+....++..++. ++++|||++|
T Consensus 97 iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~~ 171 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQV--PTDLAQKFADTHSM--PLFETSAKNPND 171 (189)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--CEEECCSSSGGG
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccee--CHHHHHHHHHHcCC--EEEEEeCCcCCc
Confidence 999999999999999886 88887765 357999999999999765554 33456667777663 7999999999
Q ss_pred -CCchHHHHHHHHHH
Q 010548 162 -IQVPDVFYYAQKAV 175 (507)
Q Consensus 162 -~gi~~l~~~i~~~i 175 (507)
.||+++|++|.+.+
T Consensus 172 ~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 172 NDHVEAIFMTLAHKL 186 (189)
T ss_dssp GSCHHHHHHHHC---
T ss_pred ccCHHHHHHHHHHHH
Confidence 99999999987765
No 66
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.92 E-value=2.1e-24 Score=193.70 Aligned_cols=160 Identities=16% Similarity=0.295 Sum_probs=126.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~-~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
..+||+++|++|||||||+++|++..+.....+ ...... ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 358999999999999999999999887554333 222222 223344556889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
|||++++.+++.+.. |+..+.... .++|+++|+||+|+.. +.. ..+....+++.++. +++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~-~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQ-WFKTVNEHANDEAQLLLVGNKSDMET-RVV--TADQGEALAKELGI--PFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCTT-CCS--CHHHHHHHHHHHTC--CEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCCc-Ccc--CHHHHHHHHHHcCC--eEEEEECCCCCCHHHH
Confidence 999999999998876 888877654 4799999999999943 233 34456667777763 7999999999999999
Q ss_pred HHHHHHHHc
Q 010548 168 FYYAQKAVL 176 (507)
Q Consensus 168 ~~~i~~~i~ 176 (507)
|++|.+.+.
T Consensus 156 ~~~l~~~~~ 164 (170)
T 1g16_A 156 FFTLAKLIQ 164 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998774
No 67
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.92 E-value=4.5e-24 Score=190.31 Aligned_cols=160 Identities=21% Similarity=0.329 Sum_probs=129.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
+.+||+++|++|||||||+++|++..+.....++... ......+....+.+.+|||||++++......+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 4589999999999999999999998876554443322 223333445567899999999999888899999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
||++++.++..+.. |...+.... .++|+++|+||+|+... .. ..+....++..++. +++++||++|.|++++
T Consensus 82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~nK~Dl~~~-~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l 155 (166)
T 2ce2_X 82 FAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLAAR-TV--ESRQAQDLARSYGI--PYIETSAKTRQGVEDA 155 (166)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSCC-CS--CHHHHHHHHHHHTC--CEEEECTTTCTTHHHH
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEchhhhhc-cc--CHHHHHHHHHHcCC--eEEEecCCCCCCHHHH
Confidence 99999999999875 888877653 37999999999999763 22 34556677777764 7999999999999999
Q ss_pred HHHHHHHHc
Q 010548 168 FYYAQKAVL 176 (507)
Q Consensus 168 ~~~i~~~i~ 176 (507)
+++|.+.+.
T Consensus 156 ~~~l~~~~~ 164 (166)
T 2ce2_X 156 FYTLVREIR 164 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 68
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.92 E-value=1.5e-24 Score=196.89 Aligned_cols=165 Identities=18% Similarity=0.261 Sum_probs=117.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-C-eeeCCccc-CCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-P-TRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~-~t~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (507)
..+.+||+++|++|||||||+++|++..+...+.++.. . ......+. ...+.+.+|||||++.+......+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 34679999999999999999999999887655433222 1 12223333 346789999999999988888899999999
Q ss_pred EEEEEeCCChhhHHHHHHhHHHHHHhcC-----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548 86 VVLTYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (507)
Q Consensus 86 il~V~D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (507)
+|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...... ...+....++..... .++++|||++
T Consensus 85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-v~~~~~~~~~~~~~~-~~~~~~Sa~~ 161 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-VSEKSAQELAKSLGD-IPLFLTSAKN 161 (182)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC-SCHHHHHHHHHHTTS-CCEEEEBTTT
T ss_pred EEEEEECCChHHHHHHHH-HHHHHHHHhcccCcCCCcEEEEEECCcccccccc-CCHHHHHHHHHhcCC-CeEEEEecCC
Confidence 999999999999999876 887776532 47999999999999644322 234455666664433 3799999999
Q ss_pred CCCchHHHHHHHHHHc
Q 010548 161 MIQVPDVFYYAQKAVL 176 (507)
Q Consensus 161 g~gi~~l~~~i~~~i~ 176 (507)
|.|++++|++|.+.+.
T Consensus 162 ~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 162 AINVDTAFEEIARSAL 177 (182)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 69
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.92 E-value=1.8e-24 Score=197.58 Aligned_cols=163 Identities=22% Similarity=0.258 Sum_probs=129.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
..+.+||+|+|++|||||||+++|++..+.....++.. .. .....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 45679999999999999999999999887655433222 11 12223334457899999999999999899999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
|+|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+ .......++...+. ++++|||++|.|++
T Consensus 87 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 87 LLVYDITSRETYNALTN-WLTDARMLASQNIVIILCGNKKDLDADREV--TFLEASRFAQENEL--MFLETSALTGENVE 161 (186)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCC--EEEEecCCCCCCHH
Confidence 99999999999999886 88877664 357999999999999765544 23445566666653 79999999999999
Q ss_pred HHHHHHHHHHc
Q 010548 166 DVFYYAQKAVL 176 (507)
Q Consensus 166 ~l~~~i~~~i~ 176 (507)
++|++|.+.+.
T Consensus 162 ~l~~~l~~~~~ 172 (186)
T 2bme_A 162 EAFVQCARKIL 172 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 70
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.92 E-value=4.8e-24 Score=194.97 Aligned_cols=161 Identities=20% Similarity=0.310 Sum_probs=128.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
.+.+||+|+|++|||||||+|+|++..+...+.++..... ....+....+.+.+|||||++.+......+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 3568999999999999999999999887666555443222 333344556789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
|||++++.+++.+.. |...+... ..++|+++|+||+|+..... ..+....++..++. ++++|||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~---~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~~ 155 (189)
T 4dsu_A 82 VFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLPSRTV---DTKQAQDLARSYGI--PFIETSAKTRQGVDD 155 (189)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTSSSCSS---CHHHHHHHHHHHTC--CEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccCccccc---CHHHHHHHHHHcCC--eEEEEeCCCCCCHHH
Confidence 999999999999886 87777664 24799999999999974322 34556777777764 799999999999999
Q ss_pred HHHHHHHHHc
Q 010548 167 VFYYAQKAVL 176 (507)
Q Consensus 167 l~~~i~~~i~ 176 (507)
+|++|.+.+.
T Consensus 156 l~~~l~~~~~ 165 (189)
T 4dsu_A 156 AFYTLVREIR 165 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 71
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.92 E-value=2.8e-24 Score=197.11 Aligned_cols=164 Identities=20% Similarity=0.306 Sum_probs=120.0
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (507)
Q Consensus 7 ~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (507)
...++.+||+++|.+|||||||+++|+++.+...+.++... ......+....+.+.+|||||++.+......+++.+|+
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 34566799999999999999999999998876554443322 12223344456789999999999888888999999999
Q ss_pred EEEEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548 86 VVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (507)
Q Consensus 86 il~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 163 (507)
+++|||++++.++..+.. |...+.... .++|+++|+||+|+... .. ..+....+++.++. ++++|||++|.|
T Consensus 96 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~g 169 (190)
T 3con_A 96 FLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNKCDLPTR-TV--DTKQAHELAKSYGI--PFIETSAKTRQG 169 (190)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSCC-CS--CHHHHHHHHHHHTC--CEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCcCCcc-cC--CHHHHHHHHHHcCC--eEEEEeCCCCCC
Confidence 999999999999999875 888777643 37999999999999762 22 34556677777764 799999999999
Q ss_pred chHHHHHHHHHHc
Q 010548 164 VPDVFYYAQKAVL 176 (507)
Q Consensus 164 i~~l~~~i~~~i~ 176 (507)
+++++++|.+.+.
T Consensus 170 i~~l~~~l~~~~~ 182 (190)
T 3con_A 170 VEDAFYTLVREIR 182 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 72
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.92 E-value=9.3e-24 Score=195.32 Aligned_cols=160 Identities=16% Similarity=0.260 Sum_probs=125.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCcccCCc-----------------------------
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFYPDR----------------------------- 58 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~~~~~----------------------------- 58 (507)
.+.+||+|+|++|||||||+++|++..+...+.++... .. ....+....
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 45799999999999999999999999876554443321 11 111222212
Q ss_pred --------eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548 59 --------VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (507)
Q Consensus 59 --------~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 130 (507)
..+.+|||||++.+......+++.+|++|+|||++++.++..+.. |+..+.... ++|+++|+||+| ...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~-~~~~i~~~~-~~piilv~NK~D-~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKT-WVNQLKISS-NYIIILVANKID-KNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHH-HHHHHHHHS-CCEEEEEEECTT-CC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHH-HHHHHHhhC-CCcEEEEEECCC-ccc
Confidence 889999999999999999999999999999999999999999875 888887754 499999999999 433
Q ss_pred CCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548 131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
+.. ..+....++...+. ++++|||++|.|++++|++|.+.+.
T Consensus 162 ~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 162 FQV--DILEVQKYAQDNNL--LFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp CCS--CHHHHHHHHHHTTC--EEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ccC--CHHHHHHHHHHcCC--cEEEEecCCCCCHHHHHHHHHHHHH
Confidence 333 33456667776653 7999999999999999999988763
No 73
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.92 E-value=8.7e-25 Score=201.31 Aligned_cols=164 Identities=16% Similarity=0.130 Sum_probs=123.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC------CCee-------eCC-cccCCceEEEEEeCCCCcc
Q 010548 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH------APTR-------LPP-DFYPDRVPVTIIDTSSSLE 71 (507)
Q Consensus 6 ~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~------~~~t-------~~~-~~~~~~~~~~i~Dt~G~~~ 71 (507)
.......+||+|+|++|||||||++.+.+. +...+.+.. ...| ... .+....+.+.+|||||++.
T Consensus 8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 8 FANREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF 86 (198)
T ss_dssp TTTTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred hhccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence 334456799999999999999999766654 333321110 0111 112 3445678999999999999
Q ss_pred chhhhHHhhccCCEEEEEEeCC------ChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHH
Q 010548 72 NKGKLNEELKRADAVVLTYACN------QQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ 145 (507)
Q Consensus 72 ~~~~~~~~~~~ad~il~V~D~~------~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~ 145 (507)
+...+..+++.+|++|+|||++ +..++..+.. |+..++....++|+++|+||+|+.+.. ..++...++.
T Consensus 87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~-~l~~~~~~~~~~piilv~NK~Dl~~~~----~~~~~~~~~~ 161 (198)
T 3t1o_A 87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYGLTLDDVPIVIQVNKRDLPDAL----PVEMVRAVVD 161 (198)
T ss_dssp CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHH-HHHHTTCCTTSSCEEEEEECTTSTTCC----CHHHHHHHHC
T ss_pred HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHH-HHHhhccccCCCCEEEEEEchhccccc----CHHHHHHHHH
Confidence 9999999999999999999999 5566777664 777775555689999999999997652 3345666676
Q ss_pred HhcccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548 146 QFREIETCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 146 ~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
.++. .++++|||++|.|++++|++|.+.+.
T Consensus 162 ~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 162 PEGK-FPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp TTCC-SCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred hcCC-ceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 6663 26999999999999999999998764
No 74
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.92 E-value=1.5e-24 Score=201.04 Aligned_cols=162 Identities=21% Similarity=0.259 Sum_probs=123.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
...+||+|+|++|||||||+++|++..+.....++.. .. .....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 4579999999999999999999999887554333221 21 122333444589999999999888888999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
+|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+ .......++...+. ++++|||++|.||++
T Consensus 103 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 103 LVYDITSRETYNSLAA-WLTDARTLASPNIVVILCGNKKDLDPEREV--TFLEASRFAQENEL--MFLETSALTGENVEE 177 (200)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHTCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEEECTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCCccccccc--CHHHHHHHHHHcCC--EEEEEeCCCCCCHHH
Confidence 9999999999999886 88877664 357999999999999765544 23445566666653 799999999999999
Q ss_pred HHHHHHHHHc
Q 010548 167 VFYYAQKAVL 176 (507)
Q Consensus 167 l~~~i~~~i~ 176 (507)
+|++|.+.+.
T Consensus 178 l~~~l~~~i~ 187 (200)
T 2o52_A 178 AFLKCARTIL 187 (200)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 75
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=4.5e-24 Score=196.31 Aligned_cols=163 Identities=18% Similarity=0.257 Sum_probs=130.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
.+.+||+|+|++|||||||+++|++..+...+.++..... ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 4568999999999999999999999887655444322111 22344455789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
+|||++++.++..+.. |+..+.... .++|+++|+||+|+... .+ ..+....++...+. ++++|||++|.|++
T Consensus 93 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~ 166 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKENR-EV--DRNEGLKFARKHSM--LFIEASAKTCDGVQ 166 (195)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSSSC-CS--CHHHHHHHHHHTTC--EEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCcCCCcEEEEEECCcCccc-cc--CHHHHHHHHHHcCC--EEEEecCCCCCCHH
Confidence 9999999999999885 888887753 47999999999999542 22 23445666666653 69999999999999
Q ss_pred HHHHHHHHHHcCC
Q 010548 166 DVFYYAQKAVLHP 178 (507)
Q Consensus 166 ~l~~~i~~~i~~~ 178 (507)
++|++|.+.+...
T Consensus 167 ~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 167 CAFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987643
No 76
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.91 E-value=6.9e-25 Score=203.91 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=97.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCC-C-eeeCCcccCC--ceEEEEEeCCCCccchhhhHHhhccCC
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATE--SVPEKVPPVHA-P-TRLPPDFYPD--RVPVTIIDTSSSLENKGKLNEELKRAD 84 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~--~~~~~~~~~~~-~-~t~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (507)
..+||+|+|++|||||||+++|++. .+...+.++.. . ......+... .+.+.+|||||++.+...+..+++.+|
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 4589999999999999999999988 66544444332 1 1122333344 689999999999988888889999999
Q ss_pred EEEEEEeCCChhhHHHHHHhHHHHHHhcCC----CCcEEEEEecccCCC-CCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 85 AVVLTYACNQQSTLSRLSSYWLPELRRLEI----KVPIIVAGCKLDLRG-DHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~~~----~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
++|+|||++++.+++.+.. |+..+..... ++|+++|+||+|+.. .+.+ ..+....++..++. ++++|||+
T Consensus 99 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~ 173 (208)
T 2yc2_C 99 YAILVFDVSSMESFESCKA-WFELLKSARPDRERPLRAVLVANKTDLPPQRHQV--RLDMAQDWATTNTL--DFFDVSAN 173 (208)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHHHCSCTTSCCEEEEEEECC-------CC--CHHHHHHHHHHTTC--EEEECCC-
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhhcccccCCcEEEEEECcccchhhccC--CHHHHHHHHHHcCC--EEEEeccC
Confidence 9999999999999999885 9988887543 799999999999987 5544 34556777777763 79999999
Q ss_pred c-CCCchHHHHHHHHHHc
Q 010548 160 T-MIQVPDVFYYAQKAVL 176 (507)
Q Consensus 160 ~-g~gi~~l~~~i~~~i~ 176 (507)
+ |.|++++|++|.+.+.
T Consensus 174 ~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 174 PPGKDADAPFLSIATTFY 191 (208)
T ss_dssp ------CHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 9 9999999999988764
No 77
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.91 E-value=6.2e-24 Score=190.95 Aligned_cols=163 Identities=13% Similarity=0.124 Sum_probs=121.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
...+.+||+++|++|||||||+++|+++.+....++. ..... .+...+..+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~-~~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 3 HMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTI-GFNVE--TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCS-SEEEE--EEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcC-ccceE--EEEECCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 3456799999999999999999999988875433332 11111 22234789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh-c-ccCcEEEeCcccCCC
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-R-EIETCVECSATTMIQ 163 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~SA~~g~g 163 (507)
+|||++++.++..+.. |+..+... ..++|+++|+||+|+...... .+....+.... . ...++++|||++|.|
T Consensus 80 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (171)
T 1upt_A 80 YVVDSCDRDRIGISKS-ELVAMLEEEELRKAILVVFANKQDMEQAMTS---SEMANSLGLPALKDRKWQIFKTSATKGTG 155 (171)
T ss_dssp EEEETTCCTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCTTSCEEEEECCTTTCTT
T ss_pred EEEECCCHHHHHHHHH-HHHHHHhchhhCCCEEEEEEECCCCcCCCCH---HHHHHHhCchhccCCceEEEECcCCCCcC
Confidence 9999999999998886 55554432 247999999999999765322 11111111111 0 012689999999999
Q ss_pred chHHHHHHHHHHcC
Q 010548 164 VPDVFYYAQKAVLH 177 (507)
Q Consensus 164 i~~l~~~i~~~i~~ 177 (507)
+++++++|.+.+..
T Consensus 156 i~~l~~~l~~~i~~ 169 (171)
T 1upt_A 156 LDEAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987743
No 78
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.4e-24 Score=201.48 Aligned_cols=164 Identities=20% Similarity=0.219 Sum_probs=127.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
...+||+|+|++|||||||+++|++..+.....++. .... ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 456999999999999999999999988765533322 2222 22334444589999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....++..++. +++++||++|.||++
T Consensus 91 lV~D~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~ 165 (223)
T 3cpj_B 91 IVYDISKSSSYENCNH-WLSELRENADDNVAVGLIGNKSDLAHLRAV--PTEESKTFAQENQL--LFTETSALNSENVDK 165 (223)
T ss_dssp EEEC-CCHHHHHHHHH-HHHHHHHHCC--CEEEEEECCGGGGGGCCS--CHHHHHHHHHHTTC--EEEECCCC-CCCHHH
T ss_pred EEEeCCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECccccccccc--CHHHHHHHHHHcCC--EEEEEeCCCCCCHHH
Confidence 9999999999999886 888887653 47999999999999865554 23455666766653 799999999999999
Q ss_pred HHHHHHHHHcCC
Q 010548 167 VFYYAQKAVLHP 178 (507)
Q Consensus 167 l~~~i~~~i~~~ 178 (507)
+|++|.+.+...
T Consensus 166 l~~~l~~~i~~~ 177 (223)
T 3cpj_B 166 AFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 79
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.91 E-value=5.9e-24 Score=189.85 Aligned_cols=157 Identities=13% Similarity=0.134 Sum_probs=117.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~ 92 (507)
+||+++|++|||||||+++|+++.+....++..... ..+...++.+.+|||||++.+...+..+++.+|++++|||+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 77 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE---EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeE---EEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 589999999999999999999888765433322111 12334678999999999999998889999999999999999
Q ss_pred CChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh-c-ccCcEEEeCcccCCCchHHH
Q 010548 93 NQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-R-EIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~SA~~g~gi~~l~ 168 (507)
+++.++..+.. |+..+... ..++|+++|+||+|+...... .+....+.... . ...++++|||++|.|++++|
T Consensus 78 ~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 78 NDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp TCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred CCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCCCCH---HHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 99999999886 66665442 247999999999999764221 11111111110 0 11258999999999999999
Q ss_pred HHHHHHHc
Q 010548 169 YYAQKAVL 176 (507)
Q Consensus 169 ~~i~~~i~ 176 (507)
++|.+.+.
T Consensus 154 ~~l~~~i~ 161 (164)
T 1r8s_A 154 DWLSNQLR 161 (164)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99988753
No 80
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.91 E-value=1.2e-24 Score=204.25 Aligned_cols=167 Identities=16% Similarity=0.241 Sum_probs=127.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc--c-CCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF--Y-PDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~--~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (507)
....+||+|+|++|||||||+|+|++..+...+.++.........+ . ...+.+.+|||||++.+......+++.+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 4567999999999999999999999888765444433322222221 1 223789999999999999899999999999
Q ss_pred EEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548 86 VVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (507)
Q Consensus 86 il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 164 (507)
+|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....++...+. ++++|||++|.|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~g~gv 162 (218)
T 4djt_A 88 AILFFDVTSRITCQNLAR-WVKEFQAVVGNEAPIVVCANKIDIKNRQKI--SKKLVMEVLKGKNY--EYFEISAKTAHNF 162 (218)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHCSSSCEEEEEECTTCC----C--CHHHHHHHTTTCCC--EEEEEBTTTTBTT
T ss_pred EEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcCC--cEEEEecCCCCCH
Confidence 999999999999999885 888877653 35899999999999875444 33444455555543 7999999999999
Q ss_pred hHHHHHHHHHHcCCCC
Q 010548 165 PDVFYYAQKAVLHPTA 180 (507)
Q Consensus 165 ~~l~~~i~~~i~~~~~ 180 (507)
+++|++|.+.+.....
T Consensus 163 ~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 163 GLPFLHLARIFTGRPD 178 (218)
T ss_dssp THHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999866544
No 81
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.91 E-value=5.9e-24 Score=197.64 Aligned_cols=163 Identities=21% Similarity=0.263 Sum_probs=126.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT--RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
..+.+||+|+|++|||||||+++|++..+...+.++.... .....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 4567999999999999999999999988765544433211 12333445568999999999999988888999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhcC-----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 161 (507)
|+|||++++.++..+.. |+..+.... .++|+++|+||+|+.. +.. ..+....++..... .+++++||++|
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~g 159 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQV--ATKRAQAWCYSKNN-IPYFETSAKEA 159 (207)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCS--CHHHHHHHHHHTTS-CCEEECBTTTT
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcccccCCCCcEEEEEECCCCcc-ccc--CHHHHHHHHHhcCC-ceEEEEeCCCC
Confidence 99999999999999875 887766542 3789999999999973 232 23444555553332 27999999999
Q ss_pred CCchHHHHHHHHHHc
Q 010548 162 IQVPDVFYYAQKAVL 176 (507)
Q Consensus 162 ~gi~~l~~~i~~~i~ 176 (507)
.|++++|++|.+.+.
T Consensus 160 ~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 160 INVEQAFQTIARNAL 174 (207)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998774
No 82
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.91 E-value=4.1e-24 Score=197.92 Aligned_cols=157 Identities=18% Similarity=0.268 Sum_probs=113.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+.+||+++|++|||||||+++|.++.+....++ ..... ..+..+++.+.+|||||++.+...+..+++.+|++++|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t-~~~~~--~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT-LHPTS--EELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFL 99 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CC-CCCSC--EEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCC-CCcee--EEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence 4568999999999999999999998876432222 22211 12233458999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc---------------ccCc
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR---------------EIET 152 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 152 (507)
||++++.+++.+.. |+..+.+. ..++|+++|+||+|+... . ..+.......... ...+
T Consensus 100 ~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (198)
T 1f6b_A 100 VDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPEA--I--SEERLREMFGLYGQTTGKGSVSLKELNARPLE 174 (198)
T ss_dssp EETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTTC--C--CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred EECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCcccc--C--CHHHHHHHhCcccccccccccccccccCceEE
Confidence 99999999999886 77666543 247999999999999762 2 2233333333211 1236
Q ss_pred EEEeCcccCCCchHHHHHHHHH
Q 010548 153 CVECSATTMIQVPDVFYYAQKA 174 (507)
Q Consensus 153 ~~~~SA~~g~gi~~l~~~i~~~ 174 (507)
+++|||++|.||+++|++|.+.
T Consensus 175 ~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 175 VFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EEECBTTTTBSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999999998764
No 83
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=4.7e-24 Score=196.95 Aligned_cols=164 Identities=19% Similarity=0.235 Sum_probs=129.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
...+||+|+|++|||||||+++|++..+...+.++..... ....+....+.+.+|||||++.+......+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 4569999999999999999999999887655444433322 223334556789999999999999889999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhc---CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~---~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
|||++++.+++.+.. |+..+... .+++|+++|+||+|+... .+ ..+....++..++. ++++|||++|.|++
T Consensus 86 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~~-~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~ 159 (199)
T 2gf0_A 86 VFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQR-EV--DTREAQAVAQEWKC--AFMETSAKMNYNVK 159 (199)
T ss_dssp EEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSSC-SS--CHHHHHHHHHHHTC--EEEECBTTTTBSHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCcc-cc--CHHHHHHHHHHhCC--eEEEEecCCCCCHH
Confidence 999999999998876 66666543 237899999999999753 22 23445566666663 69999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 010548 166 DVFYYAQKAVLHPT 179 (507)
Q Consensus 166 ~l~~~i~~~i~~~~ 179 (507)
+++++|.+.+....
T Consensus 160 ~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 160 ELFQELLTLETRRN 173 (199)
T ss_dssp HHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999875543
No 84
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=1e-23 Score=196.97 Aligned_cols=162 Identities=15% Similarity=0.282 Sum_probs=126.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
....+||+|+|++|||||||+++|++..+.....+... ... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45579999999999999999999999887554333222 222 2223334457899999999999998999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 165 (507)
|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+.. +.. ..+....++..++. ++++|||++|.||+
T Consensus 97 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~-~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~ 170 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQ-WFKTVNEHANDEAQLLLVGNKSDMET-RVV--TADQGEALAKELGI--PFIESSAKNDDNVN 170 (213)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHTTTCSEEEEEEECTTCSS-CCS--CHHHHHHHHHHHTC--CEEECBTTTTBSSH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCcc-ccc--CHHHHHHHHHHcCC--EEEEEeCCCCCCHH
Confidence 99999999999998875 888877654 3699999999999943 333 33455667777663 79999999999999
Q ss_pred HHHHHHHHHHc
Q 010548 166 DVFYYAQKAVL 176 (507)
Q Consensus 166 ~l~~~i~~~i~ 176 (507)
++|++|.+.+.
T Consensus 171 ~l~~~l~~~~~ 181 (213)
T 3cph_A 171 EIFFTLAKLIQ 181 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988763
No 85
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.91 E-value=2.2e-24 Score=196.56 Aligned_cols=160 Identities=11% Similarity=0.126 Sum_probs=115.7
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 7 ~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
....+.+||+|+|++|||||||+++|+++.+....++ ...... .+..++..+.+|||||++.+...+..+++.+|++
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 92 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-IGSNVE--EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFV 92 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECC-SSSSCE--EEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEE
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCc-CceeeE--EEEECCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 3445689999999999999999999999887222222 111111 2223568999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHH-HH-hc-ccCcEEEeCcccC
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-QQ-FR-EIETCVECSATTM 161 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~SA~~g 161 (507)
++|||++++.+++.+.. |+..+.+. ..++|+++|+||+|+...... +...... .. .. ...++++|||++|
T Consensus 93 i~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~Sa~~g 167 (181)
T 2h17_A 93 IVVVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECMTV----AEISQFLKLTSIKDHQWHIQACCALTG 167 (181)
T ss_dssp EEEEETTCTTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH----HHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHhChhhCCCeEEEEEECCCcccCCCH----HHHHHHhCcccccCCceEEEEccCCCC
Confidence 99999999999999886 66555443 358999999999999764222 1111111 11 01 1126899999999
Q ss_pred CCchHHHHHHHHH
Q 010548 162 IQVPDVFYYAQKA 174 (507)
Q Consensus 162 ~gi~~l~~~i~~~ 174 (507)
.|++++|++|.+.
T Consensus 168 ~gi~~l~~~l~~~ 180 (181)
T 2h17_A 168 EGLCQGLEWMMSR 180 (181)
T ss_dssp BTHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhh
Confidence 9999999998753
No 86
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.91 E-value=6.2e-24 Score=194.83 Aligned_cols=161 Identities=15% Similarity=0.187 Sum_probs=121.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
++.+||+|+|++|||||||+++|++..+...+.++...... .+...++.+.+|||||++++...+..+++.+|++|+|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 45799999999999999999999998876544432222211 2345678999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh--cccCcEEEeCcccCCCch
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVP 165 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~g~gi~ 165 (507)
||++++.+++.+.. |+..+... ..++|+++|+||+|+...... .+....+.... ....++++|||++|.||+
T Consensus 98 ~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 98 VDAADQEKIEASKN-ELHNLLDKPQLQGIPVLVLGNKRDLPGALDE---KELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EECCCHHHHHHHHH-HHHHHHhCcccCCCCEEEEEECCCCccCCCH---HHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 99999999999886 66555442 248999999999999764221 11111111110 011268999999999999
Q ss_pred HHHHHHHHHHc
Q 010548 166 DVFYYAQKAVL 176 (507)
Q Consensus 166 ~l~~~i~~~i~ 176 (507)
++|++|.+.+.
T Consensus 174 ~l~~~l~~~~~ 184 (188)
T 1zd9_A 174 ITLQWLIQHSK 184 (188)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 87
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=6.5e-24 Score=194.37 Aligned_cols=164 Identities=12% Similarity=0.108 Sum_probs=117.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+.+||+++|++|||||||+++|+++.+....++ ...... .+..+++.+.+|||||++++...+..+++.+|++++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-IGSNVE--EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECC-SCSSCE--EEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCC-CccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 4579999999999999999999998876522222 111111 2223468999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHH-hc-ccCcEEEeCcccCCCch
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVP 165 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~SA~~g~gi~ 165 (507)
||++++.+++.+.. |+..+.+. ..++|+++|+||+|+...... ++....+... +. ...++++|||++|.|++
T Consensus 91 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 91 VDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECMTV---AEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCCCCH---HHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 99999999999886 77666553 248999999999999764221 1211111111 11 11268999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q 010548 166 DVFYYAQKAVLHPTA 180 (507)
Q Consensus 166 ~l~~~i~~~i~~~~~ 180 (507)
+++++|.+.+..+..
T Consensus 167 ~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 167 QGLEWMMSRLKIRLE 181 (187)
T ss_dssp HHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998865543
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.91 E-value=8.2e-24 Score=194.52 Aligned_cols=157 Identities=13% Similarity=0.228 Sum_probs=117.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+.+||+++|++|||||||++++.++.+... .++...... .+..+++.+.+|||||++.+...+..+++.+|++++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 97 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWHPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFL 97 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-CCCCSCEEE--EEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-ccCCCCCeE--EEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 4568999999999999999999999886533 332222222 2233458999999999999998888999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc----------ccCcEEEeC
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR----------EIETCVECS 157 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~S 157 (507)
||++++.+++.+.. |+..+.+. ..++|+++|+||+|+... . ..++......... ...++++||
T Consensus 98 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 172 (190)
T 1m2o_B 98 VDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNA--V--SEAELRSALGLLNTTGSQRIEGQRPVEVFMCS 172 (190)
T ss_dssp EETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTC--C--CHHHHHHHTTCSSCCC---CCSSCCEEEEECB
T ss_pred EECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcCC--C--CHHHHHHHhCCccccccccccccceEEEEEeE
Confidence 99999999999886 77666542 247999999999999762 2 1222222222110 123699999
Q ss_pred cccCCCchHHHHHHHHH
Q 010548 158 ATTMIQVPDVFYYAQKA 174 (507)
Q Consensus 158 A~~g~gi~~l~~~i~~~ 174 (507)
|++|.||+++|++|.+.
T Consensus 173 a~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 173 VVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTTBSHHHHHHHHHTT
T ss_pred CCcCCCHHHHHHHHHhh
Confidence 99999999999998753
No 89
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.91 E-value=1.2e-23 Score=193.73 Aligned_cols=162 Identities=22% Similarity=0.261 Sum_probs=119.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCcc-chhhhHHhhccCCE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLE-NKGKLNEELKRADA 85 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~--~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad~ 85 (507)
...+||+|+|++|||||||+|+|++.. +...++++...+ .....++...+.+.+|||+|... +..+...+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 346899999999999999999999643 333333332222 23334455567889999999875 45566778899999
Q ss_pred EEEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548 86 VVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (507)
Q Consensus 86 il~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 163 (507)
+++|||++++.||+.+.. |...+... ..++|+++|+||+|+...+.+ . .+....++..++. ++++|||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v-~-~~~~~~~a~~~~~--~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRXREV-S-VSEGRAXAVVFDX--KFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECTTCGGGCCS-C-HHHHHHHHHHTTC--EEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCeEEEEEechhhhccccc-c-HHHHHHHHHHhCC--ceEEeccccCCC
Confidence 999999999999999886 87777653 247999999999999765444 2 2334455555553 699999999999
Q ss_pred chHHHHHHHHHHc
Q 010548 164 VPDVFYYAQKAVL 176 (507)
Q Consensus 164 i~~l~~~i~~~i~ 176 (507)
|+++|+.|.+.+.
T Consensus 159 v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 159 VKELFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.91 E-value=8.7e-24 Score=194.06 Aligned_cols=160 Identities=14% Similarity=0.212 Sum_probs=119.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
..+.+||+|+|++|||||||+++|++.. +...+.++...... .+..++..+.+|||||++.+...+..+++.+|++|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE--KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEE--EEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEE--EEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 4567999999999999999999999887 44444433322212 22334689999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcC----CCCcEEEEEecccCCCCCCccchhhhhHHHH--HHhc-ccCcEEEeCccc
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIM--QQFR-EIETCVECSATT 160 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~SA~~ 160 (507)
+|||++++.++..+.. |+..+.... .++|+++|+||+|+...... +...... ..+. ...++++|||++
T Consensus 96 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDAVTS----VKVSQLLCLENIKDKPWHICASDAIK 170 (190)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCH----HHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred EEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccCCCH----HHHHHHhChhhccCCceEEEEccCCC
Confidence 9999999999999886 666555432 47999999999999764222 2222222 1111 112689999999
Q ss_pred CCCchHHHHHHHHHH
Q 010548 161 MIQVPDVFYYAQKAV 175 (507)
Q Consensus 161 g~gi~~l~~~i~~~i 175 (507)
|.||+++|++|.+.+
T Consensus 171 ~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 171 GEGLQEGVDWLQDQI 185 (190)
T ss_dssp TBTHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998865
No 91
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.91 E-value=1.2e-23 Score=192.26 Aligned_cols=161 Identities=12% Similarity=0.143 Sum_probs=120.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+.+||+++|++|||||||+++++++. ...+.++...... .+..++..+.+|||||++++...+..+++.+|++++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIK--TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 92 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEE--EEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 567999999999999999999999887 3333333222212 2223578999999999999988899999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHH-h-cccCcEEEeCcccCCCch
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-F-REIETCVECSATTMIQVP 165 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~SA~~g~gi~ 165 (507)
||++++.+++.+.. |+..+.+. ..++|+++|+||+|+...... .+....+... . ....++++|||++|.|++
T Consensus 93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 93 VDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGALSC---NAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCCCCH---HHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 99999999999886 66655443 247999999999999765322 1111111110 0 111268999999999999
Q ss_pred HHHHHHHHHHcC
Q 010548 166 DVFYYAQKAVLH 177 (507)
Q Consensus 166 ~l~~~i~~~i~~ 177 (507)
+++++|.+.+..
T Consensus 169 ~l~~~l~~~i~~ 180 (186)
T 1ksh_A 169 PGIDWLLDDISS 180 (186)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 92
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.90 E-value=2.8e-24 Score=201.67 Aligned_cols=162 Identities=16% Similarity=0.237 Sum_probs=127.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCC----------ceEEEEEeCCCCccchhhhH
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPD----------RVPVTIIDTSSSLENKGKLN 77 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~----------~~~~~i~Dt~G~~~~~~~~~ 77 (507)
...+||+|+|++|||||||+++|++..+...+.++.. .+. ....+... .+.+.+|||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 4569999999999999999999999886443222111 111 11222333 67899999999998888899
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEE
Q 010548 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE 155 (507)
Q Consensus 78 ~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (507)
.+++.+|++|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....++..++. ++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREV--NERQARELADKYGI--PYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--CEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCCEEEEEECCcccccccc--CHHHHHHHHHHCCC--cEEE
Confidence 99999999999999999999999885 888776543 47999999999999765544 34556677777663 7999
Q ss_pred eCcccCCCchHHHHHHHHHHc
Q 010548 156 CSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 156 ~SA~~g~gi~~l~~~i~~~i~ 176 (507)
|||++|.||+++|++|.+.+.
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.90 E-value=6.8e-24 Score=193.47 Aligned_cols=160 Identities=18% Similarity=0.223 Sum_probs=117.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+.+||+++|++|||||||+++|.+..+.. +.++...... .+...++.+.+|||||++.+...+..+++.+|++++|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t~g~~~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 90 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIK--SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTEEEE--EEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCcCCeEEE--EEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 467999999999999999999999876422 2222111111 2223478999999999999998889999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh--cccCcEEEeCcccCCCch
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVP 165 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~g~gi~ 165 (507)
||++++.+++.+.. |+..+... ..++|+++|+||+|+...... ++....+.... ....++++|||++|.||+
T Consensus 91 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 91 IDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTAAPA---SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EECcCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcCcccCCCH---HHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 99999999999876 66655332 247999999999999765332 11111111100 011268999999999999
Q ss_pred HHHHHHHHHHc
Q 010548 166 DVFYYAQKAVL 176 (507)
Q Consensus 166 ~l~~~i~~~i~ 176 (507)
++|++|.+.+.
T Consensus 167 ~l~~~l~~~~~ 177 (181)
T 1fzq_A 167 DGMNWVCKNVN 177 (181)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.90 E-value=8.8e-24 Score=194.67 Aligned_cols=160 Identities=11% Similarity=0.136 Sum_probs=114.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
++.+||+|+|++|||||||+++|+++.+....++. . .. ...+...++.+.+|||||++.+...+..+++.+|++++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~-~-~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv 103 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI-G-FN-VETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 103 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEET-T-EE-EEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCCcC-c-ee-EEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 56799999999999999999999988765332221 1 11 112334678999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh--cccCcEEEeCcccCCCch
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVP 165 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~g~gi~ 165 (507)
||++++.+++.+.. |+..+... ..++|+++|+||+|+.+.... .+....+.... ....++++|||++|.|++
T Consensus 104 ~D~~~~~s~~~~~~-~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 104 VDSNDRERVQESAD-ELQKMLQEDELRDAVLLVFANKQDMPNAMPV---SELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EECCCHHHHHHHHH-HHHHHhcccccCCCeEEEEEECCCCCCCCCH---HHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 99999999999886 66665442 247999999999999764221 11111111111 011258999999999999
Q ss_pred HHHHHHHHHHc
Q 010548 166 DVFYYAQKAVL 176 (507)
Q Consensus 166 ~l~~~i~~~i~ 176 (507)
++|++|.+.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988763
No 95
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.90 E-value=1.7e-23 Score=193.24 Aligned_cols=162 Identities=13% Similarity=0.128 Sum_probs=115.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCccc-CCceEEEEEeCCCCccchhhh---HHhh
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFY-PDRVPVTIIDTSSSLENKGKL---NEEL 80 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~-~~~~~~~i~Dt~G~~~~~~~~---~~~~ 80 (507)
...+.+||+++|++|||||||++++.+... .. ++.....+ ....+. ...+.+.+|||+|++.+.... ..++
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PN-ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCC-GG-GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCC-Cc-ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 345689999999999999999998887542 22 11111111 111122 456899999999999987777 8999
Q ss_pred ccCCEEEEEEeCCCh--hhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc-----cchhhhhHHHHH----Hhcc
Q 010548 81 KRADAVVLTYACNQQ--STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-----TSLEEVMGPIMQ----QFRE 149 (507)
Q Consensus 81 ~~ad~il~V~D~~~~--~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~-----~~~~~~~~~~~~----~~~~ 149 (507)
+.+|++|+|||++++ +++..+.. |+..+....+++|+++|+||+|+...... .........++. .++
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~-~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~- 171 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHI-TVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH- 171 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHH-HHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC-
T ss_pred ccCCEEEEEEECCCchHHHHHHHHH-HHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC-
Confidence 999999999999997 66666664 77766555668999999999998753110 012223444555 233
Q ss_pred cCcEEEeCcccCCCchHHHHHHHHHH
Q 010548 150 IETCVECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 150 ~~~~~~~SA~~g~gi~~l~~~i~~~i 175 (507)
.++++|||++ .||+++|+.|++.+
T Consensus 172 -~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 -LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp -EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred -cceEEEEech-hhHHHHHHHHHHHh
Confidence 3799999999 99999999998765
No 96
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.90 E-value=6.9e-23 Score=191.73 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=115.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCC-ceEEEEEeCCCCccchh-hhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLENKG-KLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~il 87 (507)
.+.+||+++|++|||||||+++|++..+...++++...... ..+... ++.+.+|||||++.+.. ++..+++.+|++|
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI-YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE-EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE-EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 45789999999999999999999998887766654433322 333333 68999999999998887 7788899999999
Q ss_pred EEEeCCChh-hHHHHHHhHHHHHHhc---CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc---------------
Q 010548 88 LTYACNQQS-TLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--------------- 148 (507)
Q Consensus 88 ~V~D~~~~~-s~~~~~~~~~~~l~~~---~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--------------- 148 (507)
+|||+++.. ++......|...+... ..++|+++|+||+|+...... ......+...++
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA---KLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH---HHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH---HHHHHHHHHHHHHHhccchhccccccC
Confidence 999999853 4666665566665542 347999999999999865432 111111111111
Q ss_pred ---------------------ccCcEEEeCcccC------CCchHHHHHHHHH
Q 010548 149 ---------------------EIETCVECSATTM------IQVPDVFYYAQKA 174 (507)
Q Consensus 149 ---------------------~~~~~~~~SA~~g------~gi~~l~~~i~~~ 174 (507)
...+|++|||++| .||+++|++|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0236999999999 9999999999875
No 97
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.90 E-value=4.2e-25 Score=204.56 Aligned_cols=162 Identities=18% Similarity=0.270 Sum_probs=120.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP-PVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~-~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
...+||+|+|++|||||||+|+|++..+..... +...... ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 456999999999999999999999887654422 2111111 22333445578999999999999988999999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....++..++. ++++|||++|.||++
T Consensus 111 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTKKVV--DYTTAKEFADSLGI--PFLETSAKNATNVEQ 185 (199)
T ss_dssp ECC-CCCSHHHHHHHH-HHHHHHSCC-CCSEEEEC-CCSSCC--CCC--CSCC-CHHHHTTTC--CBCCCCC---HHHHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhccCCCCEEEEEECccCCccccC--CHHHHHHHHHHcCC--eEEEEECCCCCCHHH
Confidence 9999999999999986 988887764 37999999999999876554 22345666777763 699999999999999
Q ss_pred HHHHHHHHHc
Q 010548 167 VFYYAQKAVL 176 (507)
Q Consensus 167 l~~~i~~~i~ 176 (507)
+|++|.+.+.
T Consensus 186 l~~~l~~~l~ 195 (199)
T 3l0i_B 186 SFMTMAAEIK 195 (199)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.82 E-value=3.1e-25 Score=206.25 Aligned_cols=165 Identities=24% Similarity=0.332 Sum_probs=128.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
.+.+||+++|++|||||||+++|+++.+.....++. ........+....+.+.+|||||++++......+++.+|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 457999999999999999999999888755543322 2222333444556788899999999999889999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc----------cchhhhhHHHHHHhcccCcEEEeCc
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSA 158 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~SA 158 (507)
|||++++.+++.+...|+..++...+++|+++|+||+|+...... ....+....+++.++. .++++|||
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~vSA 186 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-VKYLECSA 186 (204)
Confidence 999999999999875598888877668999999999999764311 0122334455555543 26899999
Q ss_pred ccCCCchHHHHHHHHHH
Q 010548 159 TTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 159 ~~g~gi~~l~~~i~~~i 175 (507)
++|.||+++|+.|.+.+
T Consensus 187 ~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 187 LTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999987754
No 99
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.89 E-value=5.8e-23 Score=205.33 Aligned_cols=166 Identities=25% Similarity=0.333 Sum_probs=133.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
...+||+++|.+|||||||+++++++.+...+.++... ......+....+.+.+|||||++.+......+++.+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 34689999999999999999999998876665443322 22233444556778899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEEEe
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVEC 156 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (507)
|||++++.+++.+...|...++...+++|+++|+||+|+... +.+ ..+....+++.++. .++++|
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~~~ 309 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI--TYPQGLAMAKEIGA-VKYLEC 309 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCC--CHHHHHHHHHHTTC-SEEEEC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccc--cHHHHHHHHHHcCC-cEEEEe
Confidence 999999999999886699999887778999999999999654 222 33455666776653 269999
Q ss_pred CcccCCCchHHHHHHHHHHcCC
Q 010548 157 SATTMIQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 157 SA~~g~gi~~l~~~i~~~i~~~ 178 (507)
||++|.||+++|+.|.+.++.+
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999988654
No 100
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.89 E-value=3.1e-23 Score=190.09 Aligned_cols=160 Identities=16% Similarity=0.116 Sum_probs=119.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+.+||+++|++|||||||+++|+++.+....++.. .... .+...+..+.+|||||++.+...+..+++.+|++++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~-~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 96 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG-VNLE--TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV 96 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTT-CCEE--EEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCc-eEEE--EEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence 468999999999999999999999877654333222 1111 1223478999999999999988888999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh-c-ccCcEEEeCcccCCCch
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-R-EIETCVECSATTMIQVP 165 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~SA~~g~gi~ 165 (507)
||++++.++..+.. |+..+... ..++|+++|+||+|+...... .+....+.... . ...++++|||++|.|++
T Consensus 97 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 97 VDSTDRDRMGVAKH-ELYALLDEDELRKSLLLIFANKQDLPDAASE---AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EETTCCTTHHHHHH-HHHHHHTCSTTTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EeCCCHHHHHHHHH-HHHHHHhhhhcCCCeEEEEEECCCCcCCCCH---HHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 99999999998886 65555443 247999999999999765322 11111111111 0 01268999999999999
Q ss_pred HHHHHHHHHHc
Q 010548 166 DVFYYAQKAVL 176 (507)
Q Consensus 166 ~l~~~i~~~i~ 176 (507)
+++++|.+.+.
T Consensus 173 ~l~~~l~~~i~ 183 (189)
T 2x77_A 173 EGMDWLVERLR 183 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=2.6e-23 Score=189.31 Aligned_cols=159 Identities=13% Similarity=0.128 Sum_probs=114.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+.+||+++|++|||||||+++++++.+....++ ...... .+...+..+.+|||||++.+...+..+++.+|++++|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPT-IGFNVE--TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFV 92 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSS-TTCCEE--EEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCc-CccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 5679999999999999999999998776222222 221111 1223468999999999999888899999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh--c-ccCcEEEeCcccCCCc
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--R-EIETCVECSATTMIQV 164 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~SA~~g~gi 164 (507)
+|++++.+++.+.. |+..+... ..++|+++|+||+|+...... +......... . ...++++|||++|.|+
T Consensus 93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (183)
T 1moz_A 93 VDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGALSA----SEVSKELNLVELKDRSWSIVASSAIKGEGI 167 (183)
T ss_dssp EETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTCCCH----HHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred EECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCCCCH----HHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 99999999999886 66666543 357999999999999764221 1111111110 0 1126899999999999
Q ss_pred hHHHHHHHHHHc
Q 010548 165 PDVFYYAQKAVL 176 (507)
Q Consensus 165 ~~l~~~i~~~i~ 176 (507)
++++++|.+.+.
T Consensus 168 ~~l~~~l~~~~~ 179 (183)
T 1moz_A 168 TEGLDWLIDVIK 179 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988763
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.89 E-value=1.1e-22 Score=182.50 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=109.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccch------hhhHHhhc
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENK------GKLNEELK 81 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~ 81 (507)
+.++|+++|++|||||||+++|++..+.... .++++.. ..+...+..+.+|||||+..+. .....+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~---~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 78 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGN---WPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII 78 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC--------CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccC---CCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence 4589999999999999999999987653321 1122211 1122346789999999988764 23345554
Q ss_pred --cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 82 --RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 82 --~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
.+|++++|+|+++... ... |+..+.+. ++|+++|+||+|+...+.+ . .....++..++. ++++|||+
T Consensus 79 ~~~~~~~i~v~D~~~~~~---~~~-~~~~~~~~--~~p~ilv~nK~Dl~~~~~~-~--~~~~~~~~~~~~--~~~~~SA~ 147 (165)
T 2wji_A 79 NEKPDLVVNIVDATALER---NLY-LTLQLMEM--GANLLLALNKMDLAKSLGI-E--IDVDKLEKILGV--KVVPLSAA 147 (165)
T ss_dssp HHCCSEEEEEEETTCHHH---HHH-HHHHHHHT--TCCEEEEEECHHHHHHTTC-C--CCHHHHHHHHTS--CEEECBGG
T ss_pred cCCCCEEEEEecCCchhH---hHH-HHHHHHhc--CCCEEEEEEchHhccccCh-h--hHHHHHHHHhCC--CEEEEEcC
Confidence 8999999999988643 232 77777665 7999999999998654433 2 134566676663 79999999
Q ss_pred cCCCchHHHHHHHHHH
Q 010548 160 TMIQVPDVFYYAQKAV 175 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i 175 (507)
+|.|++++|++|.+.+
T Consensus 148 ~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 148 KKMGIEELKKAISIAV 163 (165)
T ss_dssp GTBSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998764
No 103
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.88 E-value=8.4e-22 Score=209.84 Aligned_cols=163 Identities=19% Similarity=0.205 Sum_probs=116.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee--------CCcc--cCCceEEEEEeCCCCccchhhhHH
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL--------PPDF--YPDRVPVTIIDTSSSLENKGKLNE 78 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~--------~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~ 78 (507)
....+||+++|.+|||||||+++|++..+.....++...... ...+ ....+.+.+|||||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456799999999999999999999998876554433322111 1222 234789999999999999999999
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (507)
Q Consensus 79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (507)
+++.+|++|+|+|+++.+. .. .|...+....+++|+|+|+||+|+...+.+ ..+.........+. ++++|||
T Consensus 118 ~l~~~d~ii~V~D~s~~~~---~~-~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~vSA 189 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSN---KH-YWLRHIEKYGGKSPVIVVMNKIDENPSYNI--EQKKINERFPAIEN--RFHRISC 189 (535)
T ss_dssp HHHSSEEEEEEECGGGGGG---HH-HHHHHHHHHSSSCCEEEEECCTTTCTTCCC--CHHHHHHHCGGGTT--CEEECCC
T ss_pred HccCCcEEEEEEeCCCchh---HH-HHHHHHHHhCCCCCEEEEEECCCccccccc--CHHHHHHHHHhcCC--ceEEEec
Confidence 9999999999999987643 33 388899888778999999999999876554 23334444455543 6999999
Q ss_pred ccCCCchHHHHHHHHHHcCCC
Q 010548 159 TTMIQVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 159 ~~g~gi~~l~~~i~~~i~~~~ 179 (507)
++|.||+++++.|.+.+....
T Consensus 190 ~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 190 KNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp -----CTTHHHHHHHHHTCTT
T ss_pred CcccCHHHHHHHHHHHHhccc
Confidence 999999999999999886543
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.88 E-value=2.3e-22 Score=182.04 Aligned_cols=159 Identities=16% Similarity=0.115 Sum_probs=113.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
..+.++|+++|++|||||||+++|++..+.....+..........+...+..+.+|||||++.+......+++.+|++++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 45678999999999999999999999887554322111111112233456788999999999998888889999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh-------cccCcEEEeCcccC
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-------REIETCVECSATTM 161 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~SA~~g 161 (507)
|+|++++....... ++..+... ++|+++|+||+|+..... +......... +...++++|||++|
T Consensus 85 v~d~~~~~~~~~~~--~l~~~~~~--~~p~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 85 VVAADDGVMPQTVE--AINHAKAA--NVPIIVAINKMDKPEANP-----DRVMQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp EEETTCCCCHHHHH--HHHHHGGG--SCCEEEEEETTTSSCSCH-----HHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred EEECCCCCcHHHHH--HHHHHHhC--CCCEEEEEECccCCcCCH-----HHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 99999854443333 33344443 799999999999976321 1111111221 11137999999999
Q ss_pred CCchHHHHHHHHHHc
Q 010548 162 IQVPDVFYYAQKAVL 176 (507)
Q Consensus 162 ~gi~~l~~~i~~~i~ 176 (507)
.|++++|++|.+.+.
T Consensus 156 ~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 156 EGLDHLLEMILLVSE 170 (178)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhh
Confidence 999999999988764
No 105
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.88 E-value=3e-23 Score=189.68 Aligned_cols=164 Identities=13% Similarity=0.220 Sum_probs=114.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCC-Cee-eCCcc---cCCceEEEEEeCCCCccchhhhHHhhccCC
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATE--SVPEKVPPVHA-PTR-LPPDF---YPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~--~~~~~~~~~~~-~~t-~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (507)
.+||+|+|++|||||||+++|++. .+...+.++.. ... ....+ ....+.+.+|||+|++++......+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 33333222211 111 11111 224678999999999988888899999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccc--hhhhhHHHHHHhccc--CcEEEeCcc
Q 010548 85 AVVLTYACNQQ-STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEVMGPIMQQFREI--ETCVECSAT 159 (507)
Q Consensus 85 ~il~V~D~~~~-~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~SA~ 159 (507)
++++|||++++ .++..+.. |+..+....++.|+++|+||+|+...+.. . .......++..++.. .+++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~-~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKP-WLFNIKARASSSPVILVGTHLDVSDEKQR-KACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHH-HHHHHHHHCTTCEEEEEEECGGGCCHHHH-HHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHH-HHHHHHhhCCCCcEEEEEECCCcccchhh-HHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999997 57888875 99888776668999999999999764322 1 012223333333321 138999999
Q ss_pred cCC-CchHHHHHHHHHHcC
Q 010548 160 TMI-QVPDVFYYAQKAVLH 177 (507)
Q Consensus 160 ~g~-gi~~l~~~i~~~i~~ 177 (507)
+|. |++++++.|.+.+..
T Consensus 160 ~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 160 EESDALAKLRKTIINESLN 178 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHHHHHhc
Confidence 997 999999999887754
No 106
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.88 E-value=4e-22 Score=183.02 Aligned_cols=165 Identities=16% Similarity=0.145 Sum_probs=113.5
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCC----------Cccchh
Q 010548 5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSS----------SLENKG 74 (507)
Q Consensus 5 ~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G----------~~~~~~ 74 (507)
........+||+|+|++|||||||+|+|++..+....+ .++++....+...+..+.+||||| .+.+..
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSK--TPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCS--SCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccC--CCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHH
Confidence 33344567899999999999999999999987322222 222332222222345688999999 444556
Q ss_pred hhHHhhccC---CEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccC
Q 010548 75 KLNEELKRA---DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE 151 (507)
Q Consensus 75 ~~~~~~~~a---d~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 151 (507)
....+++.+ |++++|+|+++..+..... +...+... ++|+++|+||+|+..........+....+...++. .
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~ 168 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE-Y 168 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC-S
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHHc--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC-C
Confidence 666677666 9999999998875554432 44555555 79999999999997643321122333444443332 3
Q ss_pred cEEEeCcccCCCchHHHHHHHHHHc
Q 010548 152 TCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 152 ~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
++++|||++|.||+++|++|.+.+.
T Consensus 169 ~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 169 TIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ceEEEecCCCCCHHHHHHHHHHHhh
Confidence 7999999999999999999988763
No 107
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.87 E-value=5.7e-22 Score=206.46 Aligned_cols=203 Identities=16% Similarity=0.135 Sum_probs=130.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchhhhH--------Hh
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGKLN--------EE 79 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~~ 79 (507)
..+||+|+|.+|||||||+|+|++... ...+..+++| ....+...++.+.+|||||+.++...+. .+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~--a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQER--AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC--------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 468999999999999999999998752 2222233333 2223345678999999999877654432 36
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
++.+|++|+|+|++++.+++.+.. +...++... ++|+++|+||+|+...... ....+... + ..++++|||+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l~-~~piIvV~NK~Dl~~~~~~-----~~~~l~~~-~-~~~~i~vSAk 380 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTE-IRELKAAHP-AAKFLTVANKLDRAANADA-----LIRAIADG-T-GTEVIGISAL 380 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHCT-TSEEEEEEECTTSCTTTHH-----HHHHHHHH-H-TSCEEECBTT
T ss_pred cccCCEEEEEEECCCCcchhhhHH-HHHHHHhcC-CCCEEEEEECcCCCCccch-----hHHHHHhc-C-CCceEEEEEC
Confidence 799999999999999988754332 333343333 7999999999999765432 11223332 1 1379999999
Q ss_pred cCCCchHHHHHHHHHHc-CCC----CCCCccchh-cccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhH
Q 010548 160 TMIQVPDVFYYAQKAVL-HPT----APLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVK 224 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i~-~~~----~~~~~~~~~-~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~ 224 (507)
+|.||++++++|.+.+. .+. .+.....++ .....+..+|.+.....+...+..+.+++++.++..
T Consensus 381 tg~GI~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~~~~dl~a~~lr~a~~~ 451 (476)
T 3gee_A 381 NGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQNALELIAHESETELIAFELRAALDY 451 (476)
T ss_dssp TTBSHHHHHHHHTHHHHSSCCCCTTSCCCCSHHHHHHHHHHHHHHHHHHTTTTTTCCSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999886 332 222333333 356788888888888777777778899998877665
No 108
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=202.98 Aligned_cols=162 Identities=12% Similarity=0.127 Sum_probs=116.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
.+.+||+|+|++|||||||+++|++..+....++.... ...+...++.+.||||||++.+..+...+++.+|++|+|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~---~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN---VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEE---EEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceE---EEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 45689999999999999999999988865443321111 112345678999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh--cccCcEEEeCcccCCCchH
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVPD 166 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~g~gi~~ 166 (507)
||++++.++..+...|...+... .+++|+++|+||+|+.+.... .+....+.... ....++++|||++|.||++
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCH---HHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 99999999999887455544433 247999999999999765322 11111111111 0112689999999999999
Q ss_pred HHHHHHHHHcC
Q 010548 167 VFYYAQKAVLH 177 (507)
Q Consensus 167 l~~~i~~~i~~ 177 (507)
+|+.|.+.+..
T Consensus 317 l~~~l~~~l~~ 327 (329)
T 3o47_A 317 GLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999987753
No 109
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.87 E-value=1.7e-21 Score=192.82 Aligned_cols=163 Identities=18% Similarity=0.158 Sum_probs=124.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCC-ceEEEEEeCCCCccch----------
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPD-RVPVTIIDTSSSLENK---------- 73 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~-~~~~~i~Dt~G~~~~~---------- 73 (507)
.+++.-.|+|+|++|||||||+|+|++.++... +..+++|. ...+... +..+.+|||||+....
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~--s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII--SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC--CSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCcccc--CCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence 455678999999999999999999999886422 22222331 1222344 7899999999986544
Q ss_pred hhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcE
Q 010548 74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC 153 (507)
Q Consensus 74 ~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (507)
.....+++.+|++++|+|++++.++.+... |+..++.. ++|+++|+||+|+...... .......+...++...++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~-~~~~l~~~--~~pvilV~NK~Dl~~~~~~--~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEI-YQNFIKPL--NKPVIVVINKIDKIGPAKN--VLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHTGGG--CCCEEEEEECGGGSSSGGG--GHHHHHHHHHHCTTCCCE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHH-HHHHHHhc--CCCEEEEEECccCCCCHHH--HHHHHHHHHHhccCCCeE
Confidence 445678899999999999999988888664 78888875 7999999999999743222 345566677776544579
Q ss_pred EEeCcccCCCchHHHHHHHHHHcC
Q 010548 154 VECSATTMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 154 ~~~SA~~g~gi~~l~~~i~~~i~~ 177 (507)
+++||++|.|++++++.|.+.+..
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEEeCCCCCCHHHHHHHHHHhCcc
Confidence 999999999999999999998753
No 110
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.87 E-value=8.4e-22 Score=186.46 Aligned_cols=163 Identities=15% Similarity=0.135 Sum_probs=112.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC---cccCCceEEEEEeCCCCcc------c---hhhhH
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP---DFYPDRVPVTIIDTSSSLE------N---KGKLN 77 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~i~Dt~G~~~------~---~~~~~ 77 (507)
.+.+||+|+|++|||||||+|+|++..+.... .+.++... .+...+..+.+|||||+.. . ...+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQS---YSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTIT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEEC---C-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC---CCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHH
Confidence 45799999999999999999999998764211 12222211 1223467899999999832 1 11223
Q ss_pred HhhccCCEEEEEEeCCChhhHHHH-HHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchh--hhhHHHHHHhcccCcEE
Q 010548 78 EELKRADAVVLTYACNQQSTLSRL-SSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE--EVMGPIMQQFREIETCV 154 (507)
Q Consensus 78 ~~~~~ad~il~V~D~~~~~s~~~~-~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 154 (507)
.++..+|++|+|||++++.++... ...|+..++...+++|+++|+||+|+...+.+ ... .....++...+...+++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSL-SIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CC-CHHHHHHHHHHHHHCCSCEEEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhh-HHHHHHHHHHHHHhcCCCceEE
Confidence 457889999999999998776522 12377777765558999999999999876554 221 23445555544223799
Q ss_pred EeCcccCCCchHHHHHHHHHHc
Q 010548 155 ECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 155 ~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
+|||++|.||+++|++|.+.+.
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 111
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.87 E-value=5.2e-22 Score=182.62 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=108.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCC----------CccchhhhHH
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSS----------SLENKGKLNE 78 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G----------~~~~~~~~~~ 78 (507)
....++|+|+|++|||||||+|+|++..+...+.+. ++.|........+..+.+||||| .+.+......
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSK-PGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCC-CCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 445799999999999999999999998754433222 22222111111123689999999 4555666677
Q ss_pred hhccC---CEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcE
Q 010548 79 ELKRA---DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETC 153 (507)
Q Consensus 79 ~~~~a---d~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~ 153 (507)
+++.+ |++++|+|++++.++.... +...+... ++|+++|+||+|+...+.. ......+...+.. ..++
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~--~~p~i~v~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKYY--GIPVIVIATKADKIPKGKW---DKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCGGGH---HHHHHHHHHHHTCCTTSEE
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCChHHH---HHHHHHHHHHHcccCCCce
Confidence 77777 9999999999988877653 45555554 7999999999999865433 1222333333321 2379
Q ss_pred EEeCcccCCCchHHHHHHHHHH
Q 010548 154 VECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 154 ~~~SA~~g~gi~~l~~~i~~~i 175 (507)
++|||++|.|+++++++|.+.+
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.86 E-value=8e-22 Score=180.28 Aligned_cols=159 Identities=16% Similarity=0.148 Sum_probs=115.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccch------hhhHHhhc
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------GKLNEELK 81 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~ 81 (507)
.++.+||+++|++|||||||+++|++..+... .++.... .....+...+..+.+|||||+..+. .....+++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVE-KKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCE-EEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeecc-ceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 45679999999999999999999998764322 2221111 1122233456889999999988764 33445554
Q ss_pred --cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 82 --RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 82 --~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
.+|++++|+|.++ ++.... |...+... ++|+++|+||+|+.....+ . .....+++.++. ++++|||+
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~-~~~~~~~~--~~piilv~nK~Dl~~~~~~-~--~~~~~~~~~~~~--~~~~~Sa~ 151 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLY-LTLQLMEM--GANLLLALNKMDLAKSLGI-E--IDVDKLEKILGV--KVVPLSAA 151 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHH-HHHHHHTT--TCCEEEEEECHHHHHHTTC-C--CCHHHHHHHHTS--CEEECBGG
T ss_pred ccCCCEEEEEecchh---HHHHHH-HHHHHHhc--CCCEEEEEEhhhccccccc-h--HHHHHHHHHhCC--CeEEEEec
Confidence 5999999999876 444443 77777664 7999999999998754433 1 345666777663 79999999
Q ss_pred cCCCchHHHHHHHHHHcCCC
Q 010548 160 TMIQVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i~~~~ 179 (507)
+|.|++++|++|.+.+....
T Consensus 152 ~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 152 KKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GTBSHHHHHHHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999886554
No 113
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=1e-21 Score=207.56 Aligned_cols=158 Identities=11% Similarity=0.105 Sum_probs=121.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V 89 (507)
++.+||+|+|++|||||||+|+|++..+....++.. .+ ...+...++.+.+|||+|++.+...+..+++.+|++|+|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~--~~-~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V 396 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FN-VETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 396 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS--EE-EEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccc--ee-EEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 456999999999999999999999988655444322 11 123445678999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc------cCcEEEeCcccC
Q 010548 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE------IETCVECSATTM 161 (507)
Q Consensus 90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~SA~~g 161 (507)
||++++.++..+.. |+..+.+. ..++|+|||+||+|+...... . .+...++. ..++++|||++|
T Consensus 397 ~D~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~SA~~g 468 (497)
T 3lvq_E 397 VDCADRDRIDEARQ-ELHRIINDREMRDAIILIFANKQDLPDAMKP---H----EIQEKLGLTRIRDRNWYVQPSCATSG 468 (497)
T ss_dssp EETTCGGGHHHHHH-HHHHHHTSGGGTTCEEEEEEECCSSSSCCCH---H----HHHHHTTCTTCCSSCEEEEECBTTTT
T ss_pred EECcchhHHHHHHH-HHHHHhhhhhcCCCcEEEEEECCCCCcCCCH---H----HHHHHhchhhhhcCCeEEEEEECCCC
Confidence 99999999999987 55555332 247999999999999764322 1 11222211 125899999999
Q ss_pred CCchHHHHHHHHHHcCC
Q 010548 162 IQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 162 ~gi~~l~~~i~~~i~~~ 178 (507)
.||+++|++|.+.+...
T Consensus 469 ~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 469 DGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp BTHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999887443
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.86 E-value=7.8e-22 Score=178.28 Aligned_cols=151 Identities=24% Similarity=0.291 Sum_probs=106.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhh--------hHHhh
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNEEL 80 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 80 (507)
+..||+|+|++|||||||+|+|++..+. ...+++.... ....+...+..+.+|||||+..+... ...++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV-LREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSC-EEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceece-eeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 4689999999999999999999987642 2222221111 11122334567999999998654221 12468
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 81 ~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
+.+|++++|||++++.+++.. .|+..+.... .++|+++|+||+|+...... .. ...+ .++++|||+
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--~~-------~~~~--~~~~~~SA~ 148 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDPA--EIWPEFIARLPAKLPITVVRNKADITGETLG--MS-------EVNG--HALIRLSAR 148 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSHH--HHCHHHHHHSCTTCCEEEEEECHHHHCCCCE--EE-------EETT--EEEEECCTT
T ss_pred HhCCEEEEEEECCCCCCHHHH--HHHHHHHHhcccCCCEEEEEECccCCcchhh--hh-------hccC--CceEEEeCC
Confidence 999999999999999887643 3777766543 47999999999998643211 00 0111 268999999
Q ss_pred cCCCchHHHHHHHHHH
Q 010548 160 TMIQVPDVFYYAQKAV 175 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i 175 (507)
+|.||+++|+.|.+.+
T Consensus 149 ~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 149 TGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TCTTHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998865
No 115
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=189.23 Aligned_cols=162 Identities=15% Similarity=0.084 Sum_probs=111.9
Q ss_pred CCCCceEEEEEcCC---------CCCHHHHHHHHhcC---CCCCCCCCCCC--Cee-eCCc--------------ccCCc
Q 010548 8 SSRTGVRVVVVGDR---------GTGKSSLIAAAATE---SVPEKVPPVHA--PTR-LPPD--------------FYPDR 58 (507)
Q Consensus 8 ~~~~~~kV~ivG~~---------~vGKSSLin~l~~~---~~~~~~~~~~~--~~t-~~~~--------------~~~~~ 58 (507)
...+.+||+|+|++ |||||||+++|++. .+...+.++.. ... .... ++...
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 35567999999999 99999999999994 44333332110 000 1111 23456
Q ss_pred eEEEEEe-----------------------CCCCccchhhhHHhhc---------------------cCCEEEEEEeCCC
Q 010548 59 VPVTIID-----------------------TSSSLENKGKLNEELK---------------------RADAVVLTYACNQ 94 (507)
Q Consensus 59 ~~~~i~D-----------------------t~G~~~~~~~~~~~~~---------------------~ad~il~V~D~~~ 94 (507)
+.+.||| ++|++.+..+...+++ +||++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 5555555555555555 7999999999999
Q ss_pred h--hhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHH
Q 010548 95 Q--STLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (507)
Q Consensus 95 ~--~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 170 (507)
+ .+++.+.. |+..+... ..++|+++|+||+|+...+.+ +....++..... .++++|||++|.||+++|++
T Consensus 175 ~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v----~~~~~~~~~~~~-~~~~e~SAk~g~gv~elf~~ 248 (255)
T 3c5h_A 175 GMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVERYI----RDAHTFALSKKN-LQVVETSARSNVNVDLAFST 248 (255)
T ss_dssp ----CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCHHHH----HHHHHHHHTSSS-CCEEECBTTTTBSHHHHHHH
T ss_pred CchhhHHHHHH-HHHHHHHHhccCCCCEEEEEEcccccccHHH----HHHHHHHHhcCC-CeEEEEECCCCCCHHHHHHH
Confidence 8 99999886 88877653 247999999999999654322 344555554322 27999999999999999999
Q ss_pred HHHHH
Q 010548 171 AQKAV 175 (507)
Q Consensus 171 i~~~i 175 (507)
|.+.+
T Consensus 249 l~~~l 253 (255)
T 3c5h_A 249 LVQLI 253 (255)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98765
No 116
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.86 E-value=1.8e-21 Score=192.47 Aligned_cols=163 Identities=12% Similarity=0.157 Sum_probs=120.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC--CCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccc-----hhhhHHhhcc
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESV--PEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN-----KGKLNEELKR 82 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~--~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~-----~~~~~~~~~~ 82 (507)
..+||+++|++|||||||+++++++.. ... +.++.........+ .+++.+.+|||||++.+ ......+++.
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEE-TTTEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEe-CCceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 468999999999999999999998742 111 11111111111122 24789999999999887 6677889999
Q ss_pred CCEEEEEEeCCChhhHHHHHHhH---HHHHHhcCCCCcEEEEEecccCCC--CCCc--cchhhhhHHHHHHhcc-cCcEE
Q 010548 83 ADAVVLTYACNQQSTLSRLSSYW---LPELRRLEIKVPIIVAGCKLDLRG--DHNA--TSLEEVMGPIMQQFRE-IETCV 154 (507)
Q Consensus 83 ad~il~V~D~~~~~s~~~~~~~~---~~~l~~~~~~~piilv~NK~Dl~~--~~~~--~~~~~~~~~~~~~~~~-~~~~~ 154 (507)
+|++|+|||++++.+++++.. | +..++...+++|+++|+||+|+.. .+.. ....+....++..++. ..+++
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~-~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~ 159 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEI-FAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF 159 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHH-HHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred CCEEEEEEECCChhhHHHHHH-HHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 999999999999999999864 5 444555566899999999999986 2220 0123456677777763 24799
Q ss_pred EeCcccCCCchHHHHHHHHHHc
Q 010548 155 ECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 155 ~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
+|||++ .|+.++|..+.+.+.
T Consensus 160 ~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHHTTC
T ss_pred EeeecC-ChHHHHHHHHHHHHc
Confidence 999999 899999999887654
No 117
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.86 E-value=1.4e-21 Score=183.90 Aligned_cols=166 Identities=11% Similarity=-0.008 Sum_probs=111.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---Cccc-CCceEEEEEeCCCCcc----------ch
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFY-PDRVPVTIIDTSSSLE----------NK 73 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~-~~~~~~~i~Dt~G~~~----------~~ 73 (507)
.....++|+|+|.+|||||||+|+|++..+.... ...+++|.. ..+. ..+..+.+|||||... +.
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFA-SKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCT-TCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceee-cCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 3455789999999999999999999988632111 111222211 1222 4467899999999532 34
Q ss_pred hhhHHhhcc---CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh---
Q 010548 74 GKLNEELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--- 147 (507)
Q Consensus 74 ~~~~~~~~~---ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--- 147 (507)
.....+++. +|++++|+|++++.+.... .|+..++.. ++|+++|+||+|+..........+........+
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTELDR--RMIEWFAPT--GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHGGG--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHHHH--HHHHHHHhc--CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 455566655 7889999999987554433 377777775 799999999999976432201111222222222
Q ss_pred --cccCcEEEeCcccCCCchHHHHHHHHHHcCC
Q 010548 148 --REIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 148 --~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~ 178 (507)
....++++|||++|.||++++++|.+.+..+
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 2234799999999999999999999987544
No 118
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.85 E-value=4.2e-21 Score=186.17 Aligned_cols=153 Identities=16% Similarity=0.144 Sum_probs=112.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccch------hhhHHhhc--c
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------GKLNEELK--R 82 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~--~ 82 (507)
.+||+++|++|||||||+|+|++..+ ..++++..-.. ....+.. +..+.+|||||+..+. .....++. .
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~-~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER-KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC-EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE-EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 57999999999999999999998763 23333211111 1122333 6789999999988765 34455665 6
Q ss_pred CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (507)
Q Consensus 83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 162 (507)
+|++++|+|+++.++.. +|...+... ++|+++|+||+|+...+.. . .....++..++. ++++|||++|.
T Consensus 81 ~d~vi~V~D~t~~e~~~----~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~-~--~~~~~l~~~lg~--~vi~~SA~~g~ 149 (272)
T 3b1v_A 81 ADSILNVVDATNLERNL----YLTTQLIET--GIPVTIALNMIDVLDGQGK-K--INVDKLSYHLGV--PVVATSALKQT 149 (272)
T ss_dssp CSEEEEEEEGGGHHHHH----HHHHHHHHT--CSCEEEEEECHHHHHHTTC-C--CCHHHHHHHHTS--CEEECBTTTTB
T ss_pred CCEEEEEecCCchHhHH----HHHHHHHhc--CCCEEEEEEChhhCCcCCc-H--HHHHHHHHHcCC--CEEEEEccCCC
Confidence 99999999998865432 266666665 7999999999998654433 1 234566777764 79999999999
Q ss_pred CchHHHHHHHHHHcC
Q 010548 163 QVPDVFYYAQKAVLH 177 (507)
Q Consensus 163 gi~~l~~~i~~~i~~ 177 (507)
|++++|+.|.+.+..
T Consensus 150 gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 150 GVDQVVKKAAHTTTS 164 (272)
T ss_dssp SHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999887543
No 119
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.85 E-value=3.3e-21 Score=185.74 Aligned_cols=156 Identities=17% Similarity=0.105 Sum_probs=115.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccchhh------hHHhh--
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK------LNEEL-- 80 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~-- 80 (507)
++.+||+++|++|||||||+|+|++..+... .++.... .....+...+..+.+|||||...+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVE-KKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCE-EEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEE-EEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 4568999999999999999999998775322 3321111 122233345689999999998766542 24555
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (507)
Q Consensus 81 ~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (507)
..+|++++|+|+++.++.. +|...+... ++|+++|+||+|+...+.. . .....+++.++. +++++||++
T Consensus 82 ~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~i-~--~~~~~l~~~lg~--~vi~~SA~~ 150 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTGM-K--IDRYELQKHLGI--PVVFTSSVT 150 (258)
T ss_dssp SCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTTC-C--BCHHHHHHHHCS--CEEECCTTT
T ss_pred cCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccch-H--HHHHHHHHHcCC--CEEEEEeeC
Confidence 5899999999999875432 266666665 7999999999998765444 2 235667777774 799999999
Q ss_pred CCCchHHHHHHHHHHcC
Q 010548 161 MIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 161 g~gi~~l~~~i~~~i~~ 177 (507)
|.|++++++.|.+.+..
T Consensus 151 g~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 151 GEGLEELKEKIVEYAQK 167 (258)
T ss_dssp CTTHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhhc
Confidence 99999999999987753
No 120
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.85 E-value=3e-21 Score=171.54 Aligned_cols=150 Identities=21% Similarity=0.232 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCCCCeeeCCcccCCceEEEEEeCCCCccc-------hhhhHHhhccC
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN-------KGKLNEELKRA 83 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~a 83 (507)
.||+++|++|||||||+++|.+..+.. ..++..... ....+...+..+.+|||||...+ ......+++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDL-KEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CC-EEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecc-eEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 689999999999999999999887431 122211111 11122234568999999998762 34455688999
Q ss_pred CEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (507)
Q Consensus 84 d~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 163 (507)
|++++|+|++++.+... ..+...++.. ++|+++|+||+|+.... +....++ .++. .++++|||++|.|
T Consensus 81 ~~~i~v~d~~~~~~~~~--~~~~~~~~~~--~~p~ilv~nK~Dl~~~~------~~~~~~~-~~~~-~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQAD--YEVAEYLRRK--GKPVILVATKVDDPKHE------LYLGPLY-GLGF-GDPIPTSSEHARG 148 (161)
T ss_dssp SEEEEEEESSSCCCHHH--HHHHHHHHHH--TCCEEEEEECCCSGGGG------GGCGGGG-GGSS-CSCEECBTTTTBS
T ss_pred CEEEEEEECCCcccHhH--HHHHHHHHhc--CCCEEEEEECcccccch------HhHHHHH-hCCC-CCeEEEecccCCC
Confidence 99999999998755443 2245555554 79999999999997542 2223333 3442 2689999999999
Q ss_pred chHHHHHHHHHH
Q 010548 164 VPDVFYYAQKAV 175 (507)
Q Consensus 164 i~~l~~~i~~~i 175 (507)
++++|++|.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998764
No 121
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.85 E-value=1.3e-21 Score=203.81 Aligned_cols=198 Identities=17% Similarity=0.144 Sum_probs=140.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCc-cchh--------hhHHh
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSL-ENKG--------KLNEE 79 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~-~~~~--------~~~~~ 79 (507)
.++|+|+|.||||||||+|+|++..+. +.+..+++|. ...+..++..+.+|||||+. ++.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a--~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRA--IVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBC--CCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCC--ccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999987631 2222233331 12233457889999999987 5542 23468
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
++.+|++|+|+|++++.++++.. +++.+ .++|+++|+||+|+... . .. +....+ .+...++++|||+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~--il~~l----~~~piivV~NK~DL~~~--~-~~-~~~~~~---~~~~~~~i~iSAk 387 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK--ILERI----KNKRYLVVINKVDVVEK--I-NE-EEIKNK---LGTDRHMVKISAL 387 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH--HHHHH----TTSSEEEEEEECSSCCC--C-CH-HHHHHH---HTCSTTEEEEEGG
T ss_pred hhcccEEEEEecCCCCCCHHHHH--HHHHh----cCCCEEEEEECcccccc--c-CH-HHHHHH---hcCCCcEEEEECC
Confidence 89999999999999988877643 44444 37899999999999753 2 11 222222 2221379999999
Q ss_pred cCCCchHHHHHHHHHHcC----CCCCCCccchh-cccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhH
Q 010548 160 TMIQVPDVFYYAQKAVLH----PTAPLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVK 224 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i~~----~~~~~~~~~~~-~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~ 224 (507)
+|.|++++++.|.+.+.. ...+...+.++ ....++..+|.+.......+....+.+++++.++..
T Consensus 388 tg~Gi~eL~~~l~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~~~~~l~a~~lr~a~~~ 457 (482)
T 1xzp_A 388 KGEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKEGMPVDMASIDLERALNL 457 (482)
T ss_dssp GTCCHHHHHHHHHHHTHHHHHHHTTCSCCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhhcCCCCcceEhhHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999999999999987542 12233333343 466788888888877766666668889999888765
No 122
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.85 E-value=9.8e-21 Score=186.38 Aligned_cols=157 Identities=22% Similarity=0.153 Sum_probs=112.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCcc--------chhhhHH
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLE--------NKGKLNE 78 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~ 78 (507)
.+..+|+|+|++|||||||+|+|++.++... +..+.+| +...+...+.++.+|||||+.. +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~iv--s~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPI--SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCC--CSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeee--cCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 4557899999999999999999999886421 1122222 1112334578999999999876 3344557
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (507)
Q Consensus 79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (507)
+++.+|++++|+|++++.+... ..+...+++..+++|+++|+||+|+..... . .......+....+++++||
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-----~-~~~~~~~~~~~~~~~~iSA 154 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE-----E-AMKAYHELLPEAEPRMLSA 154 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH-----H-HHHHHHHTSTTSEEEECCT
T ss_pred HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH-----H-HHHHHHHhcCcCcEEEEeC
Confidence 8999999999999998765543 324566776555799999999999975322 0 1222233322236899999
Q ss_pred ccCCCchHHHHHHHHHHc
Q 010548 159 TTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 159 ~~g~gi~~l~~~i~~~i~ 176 (507)
++|.|++++++.|.+.+.
T Consensus 155 ~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 155 LDERQVAELKADLLALMP 172 (301)
T ss_dssp TCHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhcc
Confidence 999999999999988653
No 123
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.85 E-value=5.7e-21 Score=198.20 Aligned_cols=198 Identities=18% Similarity=0.198 Sum_probs=135.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchhhhH--------Hh
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGKLN--------EE 79 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~~ 79 (507)
..+||+|+|++|||||||+|+|++..+ .+.+..+++| ....+..++..+.+|||||+.++....+ .+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~--a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDR--AIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHB--SCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCc--ccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 468999999999999999999998753 2222233343 2223344678899999999866544333 36
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
++.+|++++|+|++++.+..... |+..+. ++|+++|+||+|+...... . ... .+....++++|||+
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~~~--i~~~l~----~~piivV~NK~Dl~~~~~~-~---~~~----~~~~~~~~i~iSAk 366 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGDQE--IYEQVK----HRPLILVMNKIDLVEKQLI-T---SLE----YPENITQIVHTAAA 366 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHHHH--HHHHHT----TSCEEEEEECTTSSCGGGS-T---TCC----CCTTCCCEEEEBTT
T ss_pred hhcCCEEEEEeccCCCCCHHHHH--HHHhcc----CCcEEEEEECCCCCcchhh-H---HHH----HhccCCcEEEEECC
Confidence 78999999999999987766532 666553 3799999999999865433 1 111 11122379999999
Q ss_pred cCCCchHHHHHHHHHHcCCC-----CCCCccchh-cccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhH
Q 010548 160 TMIQVPDVFYYAQKAVLHPT-----APLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVK 224 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i~~~~-----~~~~~~~~~-~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~ 224 (507)
+|.|++++++.|.+.+.... .+...+.++ ....++..+|.+.....+.+.+..+.+++++.++..
T Consensus 367 tg~Gi~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~L~~a~~~L~~~~~~l~~~~~~dl~a~~Lr~a~~~ 437 (462)
T 3geh_A 367 QKQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAKMSLEQVQATITQQLPLDFWTIDLRGAIQA 437 (462)
T ss_dssp TTBSHHHHHHHHHHHHTTSSSSSCCSSCCCCHHHHHHHHHHHHHHHHHHHHTTTTCCGGGTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCCCCcccceechHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999886543 122233333 466788999999888887777889999999988775
No 124
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.85 E-value=1.3e-20 Score=174.25 Aligned_cols=161 Identities=20% Similarity=0.249 Sum_probs=125.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (507)
..+||+|+|++|||||||+++|++..+.....++.. .. .....+....+.+.+|||+|++.+......+++.++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 358999999999999999999999887555433221 11 1223344556788999999999888888899999999999
Q ss_pred EEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 89 V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
|+|+++..+++.+.. |+..+.... .+.|+++|+||+|+...+.. ....+..++...+. .++++||+++.|++++
T Consensus 84 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~--~~~~a~~l~~~~~~--~~~d~Sal~~~~i~~l 158 (199)
T 2f9l_A 84 VYDIAKHLTYENVER-WLKELRDHADSNIVIMLVGNKSDLRHLRAV--PTDEARAFAEKNNL--SFIETSALDSTNVEEA 158 (199)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECcccccccCc--CHHHHHHHHHHcCC--eEEEEeCCCCCCHHHH
Confidence 999999999988775 887776542 47899999999999765444 23345666666653 6899999999999999
Q ss_pred HHHHHHHHc
Q 010548 168 FYYAQKAVL 176 (507)
Q Consensus 168 ~~~i~~~i~ 176 (507)
++.|.+.+.
T Consensus 159 ~~~l~~~~~ 167 (199)
T 2f9l_A 159 FKNILTEIY 167 (199)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 125
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.85 E-value=2.1e-20 Score=171.90 Aligned_cols=161 Identities=20% Similarity=0.241 Sum_probs=125.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-e-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-T-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (507)
...+||+|+|++|||||||+++|++..+.....++... . .....+....+.+.+|||+|++++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 34689999999999999999999998876554332221 1 122334444567888999999988888899999999999
Q ss_pred EEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548 88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (507)
Q Consensus 88 ~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 166 (507)
+|+|+++..+++.+.. |...++.. ..+.|+++|+||+|+...+.. ....+..++.+.+. .++++||+++.|+++
T Consensus 107 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~--~~~~a~~l~~~~~~--~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 107 LVYDIAKHLTYENVER-WLKELRDHADSNIVIMLVGNKSDLRHLRAV--PTDEARAFAEKNGL--SFIETSALDSTNVEA 181 (191)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCC--EEEEEeCCCCCCHHH
Confidence 9999999999988775 87777653 347899999999999765444 23445666666653 689999999999999
Q ss_pred HHHHHHHHH
Q 010548 167 VFYYAQKAV 175 (507)
Q Consensus 167 l~~~i~~~i 175 (507)
+++.|.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 126
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.84 E-value=4.8e-21 Score=175.19 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC-cccCCceEEEEEeCCC-----------CccchhhhHHhh
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP-DFYPDRVPVTIIDTSS-----------SLENKGKLNEEL 80 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~i~Dt~G-----------~~~~~~~~~~~~ 80 (507)
+||+++|++|||||||+++|++..+.....+ +++... .+... .+.+||||| ++.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~---~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRP---GVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSST---TCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCC---CccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 6999999999999999999999886544322 122110 11111 689999999 445556666777
Q ss_pred cc-CCEEEEEEeCCChhhHHHHHHhHHHH---------HHh-cCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc
Q 010548 81 KR-ADAVVLTYACNQQSTLSRLSSYWLPE---------LRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE 149 (507)
Q Consensus 81 ~~-ad~il~V~D~~~~~s~~~~~~~~~~~---------l~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 149 (507)
+. ++++++|+++.+..++..+...|... ++. ...++|+++|+||+|+.... .+....++..++.
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-----QEVINFLAEKFEV 151 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-----HHHHHHHHHHHTC
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-----HHHHHHHHHHhhh
Confidence 76 77777777777777887764446542 111 12379999999999997642 3455667777664
Q ss_pred c-----CcEEEeCcccCCCchHHHHHHHHHHcC
Q 010548 150 I-----ETCVECSATTMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 150 ~-----~~~~~~SA~~g~gi~~l~~~i~~~i~~ 177 (507)
. .++++|||++|.|++++|++|.+.+..
T Consensus 152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 2 147999999999999999999987743
No 127
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.84 E-value=1.9e-21 Score=190.81 Aligned_cols=159 Identities=13% Similarity=0.129 Sum_probs=107.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCccc--CCceEEEEEeCCCCccchh---hhHHhhccCCEEEE
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY--PDRVPVTIIDTSSSLENKG---KLNEELKRADAVVL 88 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~i~Dt~G~~~~~~---~~~~~~~~ad~il~ 88 (507)
||+++|+.|||||||++++.++.+........+ |+..++. ...++++||||+|+++|.. ....++++++++|+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~--Tig~~~~~v~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~Il 78 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLES--TSNPSLEHFSTLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVY 78 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCC--CCSCCCEEECSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecC--eeeeeeEEEccEEEEEEEECCCchhccchhhhhhhhccCCCEEEE
Confidence 799999999999999999886643322111111 1111111 2358899999999999964 46789999999999
Q ss_pred EEeCCCh--hhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc-----cchhhhhHHHHHHh--cccCcEEEeCcc
Q 010548 89 TYACNQQ--STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-----TSLEEVMGPIMQQF--REIETCVECSAT 159 (507)
Q Consensus 89 V~D~~~~--~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~SA~ 159 (507)
|||++++ .+...+.+ |+..++...+++|+++||||+|+..+... ....+....+++.. +.-.+|++|||+
T Consensus 79 V~Ditd~~~~~~~~l~~-~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 79 VIDSQDEYINAITNLAM-IIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp ECCCSSCTTHHHHHHHH-HHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EEECCchHHHHHHHHHH-HHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 9999998 22333322 45555555678999999999999764210 01222333444421 011279999999
Q ss_pred cCCCchHHHHHHHHHHc
Q 010548 160 TMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i~ 176 (507)
+ .+|.+.|..|++.+.
T Consensus 158 d-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp S-SHHHHHHHHHHTTSS
T ss_pred C-CcHHHHHHHHHHHHH
Confidence 8 589999999987664
No 128
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.84 E-value=7.4e-21 Score=183.01 Aligned_cols=150 Identities=13% Similarity=0.148 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccchh----------hhHHhh-
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG----------KLNEEL- 80 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~~- 80 (507)
.+|+++|.+|||||||+|+|++..+... .++.... .....+...+..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~-~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVE-KKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSE-EEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEE-EEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 4899999999999999999998764222 3221111 12223334567899999999876653 344566
Q ss_pred -ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548 81 -KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (507)
Q Consensus 81 -~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (507)
+.+|++|+|+|+++.++... +...+... ++|+++|+||+|+...+.. ......+...++. +++++||+
T Consensus 81 ~~~~d~vi~VvDas~~~~~~~----l~~~l~~~--~~pvilv~NK~Dl~~~~~~---~~~~~~l~~~lg~--~vi~~SA~ 149 (256)
T 3iby_A 81 DLEYDCIINVIDACHLERHLY----LTSQLFEL--GKPVVVALNMMDIAEHRGI---SIDTEKLESLLGC--SVIPIQAH 149 (256)
T ss_dssp HSCCSEEEEEEEGGGHHHHHH----HHHHHTTS--CSCEEEEEECHHHHHHTTC---EECHHHHHHHHCS--CEEECBGG
T ss_pred hCCCCEEEEEeeCCCchhHHH----HHHHHHHc--CCCEEEEEEChhcCCcCCc---HHHHHHHHHHcCC--CEEEEECC
Confidence 89999999999998654433 44555555 7999999999998765433 1234556677763 79999999
Q ss_pred cCCCchHHHHHHHHH
Q 010548 160 TMIQVPDVFYYAQKA 174 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~ 174 (507)
+|.|++++++.|.+.
T Consensus 150 ~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 150 KNIGIPALQQSLLHC 164 (256)
T ss_dssp GTBSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999999887
No 129
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.83 E-value=1.4e-20 Score=183.06 Aligned_cols=156 Identities=14% Similarity=0.116 Sum_probs=112.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccchh----------hhHHh
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG----------KLNEE 79 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~ 79 (507)
+.++|+++|++|||||||+|+|++..+... .+++... .....+...+..+.+|||||+..+.. ....+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~-~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVE-RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSE-EEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEE-EEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 468999999999999999999998874222 2221111 12223344567899999999876552 12223
Q ss_pred --hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548 80 --LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (507)
Q Consensus 80 --~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (507)
.+.+|++|+|+|+++.++... |...+... ++|+++|+||+|+...... ......+.+.++. +++++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~----~~~~l~~~--~~p~ivv~NK~Dl~~~~~~---~~~~~~l~~~lg~--~~i~~S 149 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLY----LTLQLLEL--GIPCIVALNMLDIAEKQNI---RIEIDALSARLGC--PVIPLV 149 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHH----HHHHHHHH--TCCEEEEEECHHHHHHTTE---EECHHHHHHHHTS--CEEECC
T ss_pred HhhcCCCEEEEEecCCChHHHHH----HHHHHHhc--CCCEEEEEECccchhhhhH---HHHHHHHHHhcCC--CEEEEE
Confidence 379999999999998654332 55556555 7999999999998754333 1234566677763 799999
Q ss_pred cccCCCchHHHHHHHHHHcCC
Q 010548 158 ATTMIQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 158 A~~g~gi~~l~~~i~~~i~~~ 178 (507)
|++|.|++++++.|.+.+...
T Consensus 150 A~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 150 STRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp CGGGHHHHHHHHHHHTCCCCC
T ss_pred cCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999998876543
No 130
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.83 E-value=2.9e-20 Score=180.66 Aligned_cols=157 Identities=15% Similarity=0.070 Sum_probs=113.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccchh------hhHHhh--c
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG------KLNEEL--K 81 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~ 81 (507)
+.+||+++|++|||||||+|+|++..+... .++.... .....+...+..+.+|||||+..+.. ....++ .
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVE-KKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCE-EEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEE-eeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 468999999999999999999998875222 2221111 12223334567899999999887655 344555 7
Q ss_pred cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (507)
Q Consensus 82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 161 (507)
.+|++++|+|+++... . . +|...+.... .+|+++|+||+|+...... . .....+.+.++. +++++||++|
T Consensus 81 ~~d~vi~v~D~~~~~~--~-~-~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~-~--~~~~~l~~~lg~--~~~~~Sa~~g 150 (271)
T 3k53_A 81 NADVIVDIVDSTCLMR--N-L-FLTLELFEME-VKNIILVLNKFDLLKKKGA-K--IDIKKMRKELGV--PVIPTNAKKG 150 (271)
T ss_dssp CCSEEEEEEEGGGHHH--H-H-HHHHHHHHTT-CCSEEEEEECHHHHHHHTC-C--CCHHHHHHHHSS--CEEECBGGGT
T ss_pred CCcEEEEEecCCcchh--h-H-HHHHHHHhcC-CCCEEEEEEChhcCccccc-H--HHHHHHHHHcCC--cEEEEEeCCC
Confidence 8999999999988632 2 2 2555555541 3999999999998654333 1 125667777774 7999999999
Q ss_pred CCchHHHHHHHHHHcCC
Q 010548 162 IQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 162 ~gi~~l~~~i~~~i~~~ 178 (507)
.|++++++.+.+.+...
T Consensus 151 ~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 151 EGVEELKRMIALMAEGK 167 (271)
T ss_dssp BTHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999987544
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.83 E-value=1.2e-20 Score=195.82 Aligned_cols=161 Identities=16% Similarity=0.144 Sum_probs=115.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceEEEEEeCCCCc----------cchhhhH-
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL----------ENKGKLN- 77 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~- 77 (507)
..+||+++|++|||||||+|+|++..+. ..++++.... ....+...+..+.+|||||+. .+.....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~-~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA-VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeee-eEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 4689999999999999999999988752 2223211110 122333456789999999973 3333322
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcEEE
Q 010548 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVE 155 (507)
Q Consensus 78 ~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 155 (507)
.+++.+|++++|+|++++.++++.. |...+... ++|+++|+||+|+...+.. ...+....+...+.. ..++++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~~--~~~~~~~~--~~~iiiv~NK~Dl~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDKR--IAGYAHEA--GKAVVIVVNKWDAVDKDES-TMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHH--HHHHHHHT--TCEEEEEEECGGGSCCCTT-HHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHHH--HHHHHHHc--CCcEEEEEECccCCCcchH-HHHHHHHHHHHhcccCCCCCEEE
Confidence 5789999999999999999888864 88877765 7999999999999876544 233333444444432 237999
Q ss_pred eCcccCCCchHHHHHHHHHHcC
Q 010548 156 CSATTMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 156 ~SA~~g~gi~~l~~~i~~~i~~ 177 (507)
|||++|.|++++|+.+.+.+..
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887643
No 132
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=6.1e-20 Score=172.10 Aligned_cols=152 Identities=18% Similarity=0.275 Sum_probs=102.7
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhcc--
Q 010548 5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR-- 82 (507)
Q Consensus 5 ~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-- 82 (507)
......+.++|+++|++|||||||+++|++..+....+...+.++. .+ ....+.+|||||++.+...+..+++.
T Consensus 5 ~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~--~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 5 GIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--DY--DGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp -----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET--TG--GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred CCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE--Ee--eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 3333456799999999999999999999998865433333333322 22 56789999999999998888888877
Q ss_pred --CCEEEEEEeCC-ChhhHHHHHHhHHHHHHh-----cCCCCcEEEEEecccCCCCCCccch----hhhhHHHHHHhccc
Q 010548 83 --ADAVVLTYACN-QQSTLSRLSSYWLPELRR-----LEIKVPIIVAGCKLDLRGDHNATSL----EEVMGPIMQQFREI 150 (507)
Q Consensus 83 --ad~il~V~D~~-~~~s~~~~~~~~~~~l~~-----~~~~~piilv~NK~Dl~~~~~~~~~----~~~~~~~~~~~~~~ 150 (507)
+|++|+|||++ ++.++..... |+..+.. ...++|+++|+||+|+......... .+....++...+.
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~- 158 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK- 158 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccCCEEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc-
Confidence 99999999999 8888888876 5555433 2347999999999999876543111 2334445444442
Q ss_pred CcEEEeCcccCCC
Q 010548 151 ETCVECSATTMIQ 163 (507)
Q Consensus 151 ~~~~~~SA~~g~g 163 (507)
+++++||++|.+
T Consensus 159 -~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 -SLNEVERKINEE 170 (218)
T ss_dssp -HHHC--------
T ss_pred -cccccccccccc
Confidence 689999998875
No 133
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.81 E-value=1e-19 Score=189.77 Aligned_cols=161 Identities=16% Similarity=0.135 Sum_probs=114.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCC----------Cccchhhh
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSS----------SLENKGKL 76 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G----------~~~~~~~~ 76 (507)
...+||+++|++|||||||+|+|++... ......+++|. ...+...+..+.+||||| ++.+....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~--~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEER--VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTT--EEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCc--cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4578999999999999999999997652 11222222331 123334567899999999 45555444
Q ss_pred H-HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcE
Q 010548 77 N-EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETC 153 (507)
Q Consensus 77 ~-~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~ 153 (507)
. .+++.+|++|+|+|++++.+.... .|...+... ++|+++|+||+|+...+.. ..++....+...+.. ..++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~~--~~~~~~~~~--~~~~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKDES-TMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCCSS-HHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHHH--HHHHHHHHc--CCCEEEEEEChhcCCCchH-HHHHHHHHHHHhcccCCCCCE
Confidence 4 478999999999999987654443 377777775 7999999999999876554 333333333333321 2379
Q ss_pred EEeCcccCCCchHHHHHHHHHHcC
Q 010548 154 VECSATTMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 154 ~~~SA~~g~gi~~l~~~i~~~i~~ 177 (507)
++|||++|.||+++|+.|.+.+..
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999999987643
No 134
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.78 E-value=4.3e-19 Score=177.17 Aligned_cols=160 Identities=15% Similarity=0.166 Sum_probs=114.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeeCCcccCC-ceEEEEEeCCCCcc----chhhhHHh---hccC
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLE----NKGKLNEE---LKRA 83 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~~~t~~~~~~~~-~~~~~i~Dt~G~~~----~~~~~~~~---~~~a 83 (507)
.+|+|+|.+|||||||+|+|++.+... .++.+.-..+.. .+... ...+.+|||||+.+ +..+...+ ++.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g-~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG-MVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE-EEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE-EEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 368999999999999999999876321 222111110110 12222 36899999999643 33343444 4569
Q ss_pred CEEEEEEeCCC---hhhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548 84 DAVVLTYACNQ---QSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (507)
Q Consensus 84 d~il~V~D~~~---~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (507)
|++|+|+|+++ +.+++++.. |..++.... .++|+++|+||+|+... .+....+.+.+....++++||
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~-~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~------~e~~~~l~~~l~~~~~v~~iS 310 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLT-INQELSEYNLRLTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPIS 310 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHH-HHHHHHHSCSSTTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCCS
T ss_pred cEEEEEEECCcccccChHHHHHH-HHHHHHHhhhhhcCCCEEEEEECccCCCC------HHHHHHHHHHhhcCCCEEEEE
Confidence 99999999998 788888875 888888764 37999999999998742 233455666665323689999
Q ss_pred cccCCCchHHHHHHHHHHcCCCC
Q 010548 158 ATTMIQVPDVFYYAQKAVLHPTA 180 (507)
Q Consensus 158 A~~g~gi~~l~~~i~~~i~~~~~ 180 (507)
|+++.|++++++.|.+.+.....
T Consensus 311 A~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 311 AVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp SCCSSTTHHHHHHHHHHHTSCCC
T ss_pred CCCCcCHHHHHHHHHHHHhhCcc
Confidence 99999999999999998865443
No 135
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.77 E-value=2.2e-19 Score=183.96 Aligned_cols=160 Identities=19% Similarity=0.187 Sum_probs=109.3
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-----eCCcccCCceEEEEEeCCCCccchhh---
Q 010548 4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-----LPPDFYPDRVPVTIIDTSSSLENKGK--- 75 (507)
Q Consensus 4 m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-----~~~~~~~~~~~~~i~Dt~G~~~~~~~--- 75 (507)
|........++|+|+|++|||||||+|+|++..+... ...+++| ....+. ....+.+|||||+..+...
T Consensus 26 m~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~--~~~~gtT~d~~~~~~~~~-~~~~l~liDTpG~~d~~~l~~~ 102 (423)
T 3qq5_A 26 MRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV--SDYAGTTTDPVYKSMELH-PIGPVTLVDTPGLDDVGELGRL 102 (423)
T ss_dssp CCC---CCCEEEEEECSCSTTTTTTTTSSCC---------------CCCCEEEEEET-TTEEEEEEECSSTTCCCTTCCC
T ss_pred cccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc--CCCCCeeeeeEEEEEEEC-CCCeEEEEECcCCCcccchhHH
Confidence 3333445678999999999999999999998875321 1112222 111221 2238999999999876543
Q ss_pred ----hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccC
Q 010548 76 ----LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE 151 (507)
Q Consensus 76 ----~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 151 (507)
...+++.+|++|+|+|++... ....|+..+++. ++|+++|+||+|+...... +....+...++.
T Consensus 103 ~~~~~~~~l~~aD~vllVvD~~~~~----~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~----~~~~~l~~~~g~-- 170 (423)
T 3qq5_A 103 RVEKARRVFYRADCGILVTDSAPTP----YEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAE----ELKGLYESRYEA-- 170 (423)
T ss_dssp CHHHHHHHHTSCSEEEEECSSSCCH----HHHHHHHHHHHT--TCCEEEECCCCTTTTCCCT----HHHHHSSCCTTC--
T ss_pred HHHHHHHHHhcCCEEEEEEeCCChH----HHHHHHHHHHhc--CCCEEEEEeCcCCCCccHH----HHHHHHHHHcCC--
Confidence 346889999999999983322 223488888887 8999999999999876443 333444444543
Q ss_pred cEEEeCcccCCCchHHHHHHHHHHcCC
Q 010548 152 TCVECSATTMIQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 152 ~~~~~SA~~g~gi~~l~~~i~~~i~~~ 178 (507)
+++++||++|.|++++++.|.+.+...
T Consensus 171 ~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 171 KVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 789999999999999999999988543
No 136
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.77 E-value=3e-18 Score=175.93 Aligned_cols=170 Identities=16% Similarity=0.126 Sum_probs=116.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCC--C----------CCCCCeeeCC---ccc-----CCceEEEEEeCC
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV--P----------PVHAPTRLPP---DFY-----PDRVPVTIIDTS 67 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~--~----------~~~~~~t~~~---~~~-----~~~~~~~i~Dt~ 67 (507)
...+.++|+++|++|+|||||+++|++....... . ......+... ... .....+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 3456799999999999999999999985432210 0 0001111100 001 112789999999
Q ss_pred CCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh
Q 010548 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF 147 (507)
Q Consensus 68 G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 147 (507)
|++.+.......+..+|++|+|+|++++.+.....+ |+..++... .+|+++|+||+|+.+........+.+..+...+
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~-~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGIIG-VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHH-HHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHH-HHHHHHHcC-CCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999875665554 666666553 369999999999976422100111222222221
Q ss_pred c-ccCcEEEeCcccCCCchHHHHHHHHHHcCCC
Q 010548 148 R-EIETCVECSATTMIQVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 148 ~-~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~~ 179 (507)
+ ...+++++||++|.|++++++.|.+.+..+.
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 1 1237999999999999999999998775443
No 137
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=2.6e-18 Score=178.30 Aligned_cols=158 Identities=17% Similarity=0.159 Sum_probs=108.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchhh------------
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGK------------ 75 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~------------ 75 (507)
..+||+|+|++|||||||+|+|++.... .....+++| ....+...+..+.+|||+|+......
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~--~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERA--LVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTE--EECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCccc--ccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 4689999999999999999999987641 122222233 12233345668999999997533221
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcE
Q 010548 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETC 153 (507)
Q Consensus 76 ~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~ 153 (507)
...+++.+|++++|+|++++.+..+.. +...+... ++|+++|+||+|+...+.. ...+....+...+.. ..++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~--i~~~l~~~--~~~~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQR--MAGLMERR--GRASVVVFNKWDLVVHREK-RYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHHHT--TCEEEEEEECGGGSTTGGG-CHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECccCCCchhh-HHHHHHHHHHHHhccCCCCcE
Confidence 135788999999999999887766532 55556655 7999999999999765432 222223333344332 2379
Q ss_pred EEeCcccCCCchHHHHHHHHHH
Q 010548 154 VECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 154 ~~~SA~~g~gi~~l~~~i~~~i 175 (507)
+++||++|.|++++|+.+.+.+
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998765
No 138
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.76 E-value=1.8e-19 Score=189.10 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=114.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC---ccc-CCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP---DFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~---~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
+..+|+++|++|+|||||+++|.+..+..... +++|... .+. ..+..+.+|||||++.|..++..+++.+|++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~---~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~v 79 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEA---GGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIV 79 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSS---CCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC---CceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEE
Confidence 45789999999999999999999766533321 1222111 111 2456899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHH---HHHhcccCcEEEeCcccCCC
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI---MQQFREIETCVECSATTMIQ 163 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~SA~~g~g 163 (507)
|+|+|++++...+... ++..+... ++|+++|+||+|+...... ........+ ...++...+++++||++|.|
T Consensus 80 ILVVDa~dg~~~qt~e--~l~~~~~~--~vPiIVViNKiDl~~~~~~-~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~G 154 (537)
T 3izy_P 80 ILVVAADDGVMKQTVE--SIQHAKDA--HVPIVLAINKCDKAEADPE-KVKKELLAYDVVCEDYGGDVQAVHVSALTGEN 154 (537)
T ss_dssp EEECBSSSCCCHHHHH--HHHHHHTT--TCCEEECCBSGGGTTTSCC-SSSSHHHHTTSCCCCSSSSEEECCCCSSSSCS
T ss_pred EEEEECCCCccHHHHH--HHHHHHHc--CCcEEEEEecccccccchH-HHHHHHHhhhhhHHhcCCCceEEEEECCCCCC
Confidence 9999999987666654 44555554 7899999999999764322 111111111 12222223789999999999
Q ss_pred chHHHHHHHHHHc
Q 010548 164 VPDVFYYAQKAVL 176 (507)
Q Consensus 164 i~~l~~~i~~~i~ 176 (507)
++++++.|...+.
T Consensus 155 I~eLle~I~~l~~ 167 (537)
T 3izy_P 155 MMALAEATIALAE 167 (537)
T ss_dssp SHHHHHHHHHHHT
T ss_pred chhHHHHHHHhhh
Confidence 9999999988764
No 139
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.76 E-value=3.9e-18 Score=172.25 Aligned_cols=158 Identities=17% Similarity=0.144 Sum_probs=110.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccchh---------hhHHh
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG---------KLNEE 79 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~ 79 (507)
...++|+++|.+|||||||+|+|++..+... .+........ ..+...+..+.+|||||...... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINV-GQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEE-EEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeE-EEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 4568999999999999999999998764211 2221111111 12223467899999999854321 11233
Q ss_pred hccCCEEEEEEeCCChh--hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548 80 LKRADAVVLTYACNQQS--TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (507)
Q Consensus 80 ~~~ad~il~V~D~~~~~--s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (507)
...+|++++|+|++++. +++.... |+..+.....++|+++|+||+|+...... +....++...+ .++++||
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~-~~~~i~~~~~~~piilV~NK~Dl~~~~~~----~~~~~~~~~~~--~~~~~iS 316 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIH-LFEEVHGEFKDLPFLVVINKIDVADEENI----KRLEKFVKEKG--LNPIKIS 316 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHH-HHHHHHHHTTTSCEEEEECCTTTCCHHHH----HHHHHHHHHTT--CCCEECB
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHH-HHHHHHHhcCCCCEEEEEECcccCChHHH----HHHHHHHHhcC--CCeEEEe
Confidence 45799999999999876 6777664 88888775447999999999999753221 22333333433 2689999
Q ss_pred cccCCCchHHHHHHHHHH
Q 010548 158 ATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 158 A~~g~gi~~l~~~i~~~i 175 (507)
|++|.|+++++++|.+.+
T Consensus 317 A~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 317 ALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 999999999999998876
No 140
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.76 E-value=2e-18 Score=170.05 Aligned_cols=157 Identities=19% Similarity=0.146 Sum_probs=108.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCc-c--------chhhhH
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSL-E--------NKGKLN 77 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~-~--------~~~~~~ 77 (507)
.+..+|+|+|++|||||||+|+|++..+.. .+..+.+|. ...+...+..+.+|||||+. . +.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i--~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEE--CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccc--cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 345689999999999999999999987532 111122221 11233457889999999986 2 222334
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (507)
Q Consensus 78 ~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (507)
.+++.+|++++|+|+++ -+.. ...+...+... +.|+++|+||+|+..... ...+.+..+...++. ..++++|
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~~~--~~~i~~~l~~~--~~P~ilvlNK~D~~~~~~--~~~~~l~~l~~~~~~-~~~i~iS 155 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WTPD--DEMVLNKLREG--KAPVILAVNKVDNVQEKA--DLLPHLQFLASQMNF-LDIVPIS 155 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CCHH--HHHHHHHHHSS--SSCEEEEEESTTTCCCHH--HHHHHHHHHHTTSCC-SEEEECC
T ss_pred HHHhcCCEEEEEEeCCC-CCHH--HHHHHHHHHhc--CCCEEEEEECcccCccHH--HHHHHHHHHHHhcCc-CceEEEE
Confidence 67889999999999977 3332 22244455543 799999999999875211 123344455554442 2689999
Q ss_pred cccCCCchHHHHHHHHHHc
Q 010548 158 ATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 158 A~~g~gi~~l~~~i~~~i~ 176 (507)
|++|.|++++++.|.+.+.
T Consensus 156 A~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 156 AETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTTTHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHhCC
Confidence 9999999999999987654
No 141
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.75 E-value=3e-18 Score=165.31 Aligned_cols=170 Identities=15% Similarity=0.140 Sum_probs=106.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCC-CCCeeeCCcccCCceEEEEEeCCCCccchhh-----------
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPV-HAPTRLPPDFYPDRVPVTIIDTSSSLENKGK----------- 75 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~-~~~~~~~~-~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 75 (507)
..+.++|+|+|++|||||||+|+|++.. +.....+. .........+.+.+..+.||||||+..+...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999999877 33222221 1001111123355788999999998654321
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC---CCCcEEEEEe-cccCCCCCCccchh-------hhhHHHH
Q 010548 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGC-KLDLRGDHNATSLE-------EVMGPIM 144 (507)
Q Consensus 76 ~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~N-K~Dl~~~~~~~~~~-------~~~~~~~ 144 (507)
...+++.+|++|+|+|+++.... ...+...+.+.. ...|+++|+| |+|+.... . .. ..+..+.
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~---~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~--~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQ---DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-L--MDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHH---HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-H--HHHHHHCCCHHHHHHH
T ss_pred HHhcCCCCcEEEEEEeCCCCCHH---HHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-H--HHHHHhcchHHHHHHH
Confidence 22367899999999999862222 221333343321 1356666666 99997532 1 11 2233355
Q ss_pred HHhcccC-cE--EEeCcccCCCchHHHHHHHHHHcCCCCCCCc
Q 010548 145 QQFREIE-TC--VECSATTMIQVPDVFYYAQKAVLHPTAPLFD 184 (507)
Q Consensus 145 ~~~~~~~-~~--~~~SA~~g~gi~~l~~~i~~~i~~~~~~~~~ 184 (507)
..++... .+ +++||++|.|++++|+.|.+.+.......+.
T Consensus 173 ~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~ 215 (260)
T 2xtp_A 173 AACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYT 215 (260)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCC
Confidence 5554311 12 7899999999999999999988654434443
No 142
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.74 E-value=6.3e-18 Score=176.91 Aligned_cols=164 Identities=15% Similarity=0.144 Sum_probs=110.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC----CCCCCCCCCCCeeeCC---cccCCceEEEEEeCCCCccchhhhHHhhc
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATES----VPEKVPPVHAPTRLPP---DFYPDRVPVTIIDTSSSLENKGKLNEELK 81 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~----~~~~~~~~~~~~t~~~---~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 81 (507)
.++.++|+++|++++|||||+++|++.. ..........+.|+.. .+...+..+.+|||||++.+...+...+.
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHh
Confidence 3567999999999999999999999876 1111111222333222 12235689999999999988888888999
Q ss_pred cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh-cc-cCcEEEeCcc
Q 010548 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-RE-IETCVECSAT 159 (507)
Q Consensus 82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~SA~ 159 (507)
.+|++|+|+|++++...+... ++..++.. ++|+++|+||+|+.+........+.+..+.... +. ..+++++||+
T Consensus 96 ~aD~~ilVvda~~g~~~qt~e--~l~~~~~~--~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~ 171 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTGE--HMLILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK 171 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred hCCEEEEEEecCCCccHHHHH--HHHHHHHc--CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECc
Confidence 999999999999843222222 33344444 789999999999976321101223333443333 11 2379999999
Q ss_pred cCCCchHHHHHHHHHHc
Q 010548 160 TMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 160 ~g~gi~~l~~~i~~~i~ 176 (507)
+|.|++++++.|.+.+.
T Consensus 172 ~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 172 TGFGVDELKNLIITTLN 188 (482)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhc
Confidence 99999999999998764
No 143
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.3e-17 Score=152.78 Aligned_cols=120 Identities=20% Similarity=0.277 Sum_probs=87.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhcc----CC
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR----AD 84 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~----ad 84 (507)
..+.++|+++|++|||||||+++|++..+....++..+.++. ......+.+|||||+..+...+..+++. +|
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 120 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 120 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee----eecCCeEEEEECCCCchHHHHHHHHHHhhcccCC
Confidence 356789999999999999999999998865433332222222 1256789999999999887777777765 89
Q ss_pred EEEEEEeCC-ChhhHHHHHHhHHHHHHh-----cCCCCcEEEEEecccCCCCCCc
Q 010548 85 AVVLTYACN-QQSTLSRLSSYWLPELRR-----LEIKVPIIVAGCKLDLRGDHNA 133 (507)
Q Consensus 85 ~il~V~D~~-~~~s~~~~~~~~~~~l~~-----~~~~~piilv~NK~Dl~~~~~~ 133 (507)
++|+|||++ +..++..+.. |+..+.. ...++|+++|+||+|+......
T Consensus 121 ~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 121 GLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp EEEEEEETTCCHHHHHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred EEEEEEECCCCchhHHHHHH-HHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 999999999 8889988876 5544432 2247999999999999876543
No 144
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.73 E-value=3.3e-17 Score=168.43 Aligned_cols=164 Identities=18% Similarity=0.165 Sum_probs=102.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc--------------------c--CC----ceEEEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF--------------------Y--PD----RVPVTI 63 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~--------------------~--~~----~~~~~i 63 (507)
.+.++|+++|+.++|||||+++|++...........++.|+...+ . .. ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 456999999999999999999999653211111111222322111 0 01 268999
Q ss_pred EeCCCCccchhhhHHhhccCCEEEEEEeCCCh----hhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhh
Q 010548 64 IDTSSSLENKGKLNEELKRADAVVLTYACNQQ----STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV 139 (507)
Q Consensus 64 ~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~----~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~ 139 (507)
|||||++.+...+...+..+|++|+|+|++++ ++.+.+. .++... ..|+++|+||+|+..........++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-----~~~~l~-~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM-----ALEILG-IDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH-----HHHHTT-CCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH-----HHHHcC-CCeEEEEEEccCCCCHHHHHHHHHH
Confidence 99999988877777777888999999999964 3444332 233332 3589999999999875432112233
Q ss_pred hHHHHHHhc-ccCcEEEeCcccCCCchHHHHHHHHHHcCCC
Q 010548 140 MGPIMQQFR-EIETCVECSATTMIQVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 140 ~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~~ 179 (507)
+..+...+. ...+++++||++|.|++++++.|.+.+..+.
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~ 200 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPK 200 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCC
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 444444321 1237999999999999999999998775443
No 145
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.72 E-value=2.1e-17 Score=171.11 Aligned_cols=158 Identities=16% Similarity=0.101 Sum_probs=105.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC--C--------------------------CCCCCCeeeC---CcccCC
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--V--------------------------PPVHAPTRLP---PDFYPD 57 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~--------------------------~~~~~~~t~~---~~~~~~ 57 (507)
....++|+++|++|+|||||+++|+....... . .....++|+. ..+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 45679999999999999999999965431100 0 0001223321 123456
Q ss_pred ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhH---H---HHHHhHHHHHHhcCCCCc-EEEEEecccCCCC
Q 010548 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTL---S---RLSSYWLPELRRLEIKVP-IIVAGCKLDLRGD 130 (507)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~---~---~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~ 130 (507)
+..+.+|||||+++|...+..+++.+|++|+|+|++++... + ...+ .+..+... ++| +|+|+||+|+...
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e-~l~~~~~~--~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAKTA--GVKHLIVLINKMDDPTV 170 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHH-HHHHHHHc--CCCeEEEEeecCCCccc
Confidence 77999999999999998888999999999999999986421 1 1111 33334444 667 9999999999642
Q ss_pred CC----ccchhhhhHHHHHHhcc----cCcEEEeCcccCCCchHHHH
Q 010548 131 HN----ATSLEEVMGPIMQQFRE----IETCVECSATTMIQVPDVFY 169 (507)
Q Consensus 131 ~~----~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gi~~l~~ 169 (507)
.. .....+.+..+...++. ..+++++||++|.|+.++.+
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 11 00122333444444442 23699999999999999655
No 146
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.72 E-value=9.1e-18 Score=160.66 Aligned_cols=168 Identities=15% Similarity=0.145 Sum_probs=106.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCc--------cchhhhHH
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSL--------ENKGKLNE 78 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~ 78 (507)
.+.+||+|+|.+|||||||+|+|++..+.....+.. ++| ....+...+..+.+|||||.. .+...+..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~-~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGAT-SVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC----------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCC-CccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 457999999999999999999999988544321111 111 112334557889999999973 33333333
Q ss_pred hh----ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhc-C---CCCcEEEEEecccCCCCCCccch-----hhhhHHHHH
Q 010548 79 EL----KRADAVVLTYACNQQSTLSRLSSYWLPELRRL-E---IKVPIIVAGCKLDLRGDHNATSL-----EEVMGPIMQ 145 (507)
Q Consensus 79 ~~----~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~-~---~~~piilv~NK~Dl~~~~~~~~~-----~~~~~~~~~ 145 (507)
++ +.+|++|+|+|+++. +... ..++..+.+. + .+.|+|+|+||+|+...... .. ...+..+..
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~-~~~~--~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~-~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRF-TAQD--QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLH-DYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBC-CHHH--HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHH-HHHHHCCCHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCCCC-CHHH--HHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHH-HHHhhcccHHHHHHHH
Confidence 33 999999999999852 2222 2244444432 1 26899999999999764211 11 023566666
Q ss_pred HhcccCcEEEeCccc-----CCCchHHHHHHHHHHcCCCCCCCc
Q 010548 146 QFREIETCVECSATT-----MIQVPDVFYYAQKAVLHPTAPLFD 184 (507)
Q Consensus 146 ~~~~~~~~~~~SA~~-----g~gi~~l~~~i~~~i~~~~~~~~~ 184 (507)
.++. .++.+++.. +.|+.+|++.|.+.+.......|.
T Consensus 174 ~~g~--~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~ 215 (247)
T 3lxw_A 174 ECGG--RVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYS 215 (247)
T ss_dssp HTTT--CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HcCC--eEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 6665 355555443 689999999998887654444443
No 147
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.72 E-value=2.2e-17 Score=166.42 Aligned_cols=163 Identities=17% Similarity=0.151 Sum_probs=104.6
Q ss_pred ceE-EEEEcCCCCCHHHHHHHHhcCCCCCC-CCC-CCCCeeeCCcccCCceEEEEEeCCCCccc--hh------hhHHhh
Q 010548 12 GVR-VVVVGDRGTGKSSLIAAAATESVPEK-VPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLEN--KG------KLNEEL 80 (507)
Q Consensus 12 ~~k-V~ivG~~~vGKSSLin~l~~~~~~~~-~~~-~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~--~~------~~~~~~ 80 (507)
.++ |+|+|.+|||||||+|+|++..+... .+. +...++. .+...+..+.+|||+|.... .. .....+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~--~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~ 255 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRY--AIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEA 255 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEE--EEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEE--EEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHH
Confidence 456 99999999999999999998774221 111 1111111 22234478899999996321 11 122357
Q ss_pred ccCCEEEEEEeCCChh--hHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHh-cccCcEEEe
Q 010548 81 KRADAVVLTYACNQQS--TLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-REIETCVEC 156 (507)
Q Consensus 81 ~~ad~il~V~D~~~~~--s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 156 (507)
..+|++++|+|++++. ....+.. |...++... .++|+|+|+||+|+...... ........+...+ ....+++++
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~-~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~ 333 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQS-SFEILREIGVSGKPILVTLNKIDKINGDLY-KKLDLVEKLSKELYSPIFDVIPI 333 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHH-HHHHHHHHTCCSCCEEEEEECGGGCCSCHH-HHHHHHHHHHHHHCSCEEEEEEC
T ss_pred HhCCEEEEEEECCCCcchHHHHHHH-HHHHHHHhCcCCCCEEEEEECCCCCCchHH-HHHHHHHHHHHHhcCCCCcEEEE
Confidence 8999999999999876 4555443 666666543 47899999999998754211 1111222333444 211257999
Q ss_pred CcccCCCchHHHHHHHHHHcCC
Q 010548 157 SATTMIQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 157 SA~~g~gi~~l~~~i~~~i~~~ 178 (507)
||++|.|++++++.|.+.+..+
T Consensus 334 SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHHhccc
Confidence 9999999999999998876543
No 148
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=156.94 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=101.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCcc-----------chhh
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLE-----------NKGK 75 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~ 75 (507)
...+||+|+|++|||||||+|+|++..+.....+. ..+| ....+...+..+.+|||||... +...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~-~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAA-KSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC--------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCC-CceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 45799999999999999999999998764332110 0111 1122334567899999999643 2223
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhc---CCCCcEEEEEecccCCCCCCccc----hhhhhHHHHHHhc
Q 010548 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATS----LEEVMGPIMQQFR 148 (507)
Q Consensus 76 ~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~---~~~~piilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~ 148 (507)
...+++.+|++|+|+|+++.... .. .|+..+.+. ....|+++|+||+|+........ ..+.+..+...++
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~-~~--~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEE-EH--KATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSH-HH--HHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHhcCCCCcEEEEEeeCCCCCHH-HH--HHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 33456788999999998764332 21 144333321 12469999999999876543310 1234666777777
Q ss_pred ccCcEEEeCccc-----CCCchHHHHHHHHHHcCC
Q 010548 149 EIETCVECSATT-----MIQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 149 ~~~~~~~~SA~~-----g~gi~~l~~~i~~~i~~~ 178 (507)
. .++.+++.. +.++.++++.+.+.+...
T Consensus 183 ~--~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 183 D--RYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp S--SEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C--EEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 5 466666653 378999999888877443
No 149
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.72 E-value=1e-17 Score=176.52 Aligned_cols=116 Identities=11% Similarity=0.096 Sum_probs=86.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCC-------------CCCC------CCCee---eCCcccCCceEEEEEeCCC
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-------------VPPV------HAPTR---LPPDFYPDRVPVTIIDTSS 68 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-------------~~~~------~~~~t---~~~~~~~~~~~~~i~Dt~G 68 (507)
+..+|+|+|++|||||||+++|+....... .... ..++| ....+.+.++.++||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 457999999999999999999973221000 0000 01111 1123345678999999999
Q ss_pred CccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548 69 SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (507)
Q Consensus 69 ~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 130 (507)
+.++......+++.+|++|+|+|++++.+..... ++..+... ++|+++|+||+|+...
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~--~~~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK--LMEVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH--HHHHHHTT--TCCEEEEEECTTSCCS
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEeCCCCccc
Confidence 9999999999999999999999999987777665 55556655 7999999999999754
No 150
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.72 E-value=3.9e-17 Score=160.68 Aligned_cols=160 Identities=16% Similarity=0.144 Sum_probs=103.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCC----------------------eeeC-------------
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAP----------------------TRLP------------- 51 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~---~~~~~~~----------------------~t~~------------- 51 (507)
...++|+|+|++|||||||+|+|++..+.+. ..+..+. ++..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 4567999999999999999999999886422 1111221 1100
Q ss_pred ----Ccc----------cCCceEEEEEeCCCCcc-------------chhhhHHhhccCCEEE-EEEeCCChhhHHHHHH
Q 010548 52 ----PDF----------YPDRVPVTIIDTSSSLE-------------NKGKLNEELKRADAVV-LTYACNQQSTLSRLSS 103 (507)
Q Consensus 52 ----~~~----------~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~il-~V~D~~~~~s~~~~~~ 103 (507)
..+ ......+.+|||||+.. +..+...+++.++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 000 01136899999999742 3345567888888766 7999988655444322
Q ss_pred hHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc-ccCcEEEeCcccCCCchHHHHHHHHH
Q 010548 104 YWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSATTMIQVPDVFYYAQKA 174 (507)
Q Consensus 104 ~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~i~~~ 174 (507)
|+..+... ++|+++|+||+|+...... ..+........+. ...+++++||++|.|++++++.|.+.
T Consensus 184 -~~~~~~~~--~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 -IAKEVDPQ--GQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp -HHHHHCTT--CSSEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred -HHHHhCCC--CCeEEEEEEccccCCCCch--HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 55555543 7899999999999765332 1111111000010 11257899999999999999998874
No 151
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.71 E-value=3e-18 Score=178.47 Aligned_cols=157 Identities=16% Similarity=0.170 Sum_probs=107.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (507)
++..+|+++|++++|||||+++|.+..+..... +++|. ...+...+..+.+|||||++.|..++...+..+|++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~---~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~a 78 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEA---GGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIV 78 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTB---CCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccC---CCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEE
Confidence 355799999999999999999998755432211 11221 112334567899999999999999888899999999
Q ss_pred EEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhh---hHHHHHHhcccCcEEEeCcccCCC
Q 010548 87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV---MGPIMQQFREIETCVECSATTMIQ 163 (507)
Q Consensus 87 l~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~SA~~g~g 163 (507)
|+|+|++++...+... .+..++.. ++|+++++||+|+...... ..... ...+...++...+++++||++|.|
T Consensus 79 ILVVda~~g~~~qT~e--~l~~~~~~--~vPiIVviNKiDl~~~~~~-~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 79 VLVVAADDGVMPQTIE--AIQHAKAA--QVPVVVAVNKIDKPEADPD-RVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp EEEEETTTBSCTTTHH--HHHHHHHT--TCCEEEEEECSSSSTTCCC-CTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred EEEeecccCccHHHHH--HHHHHHhc--CceEEEEEEeccccccCHH-HHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 9999999853322222 22334444 7899999999999753211 01111 111122333234799999999999
Q ss_pred chHHHHHHHHH
Q 010548 164 VPDVFYYAQKA 174 (507)
Q Consensus 164 i~~l~~~i~~~ 174 (507)
++++++.|...
T Consensus 154 I~eLle~I~~~ 164 (501)
T 1zo1_I 154 IDELLDAILLQ 164 (501)
T ss_dssp CTTHHHHTTTT
T ss_pred cchhhhhhhhh
Confidence 99999998653
No 152
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.71 E-value=5.4e-18 Score=166.97 Aligned_cols=134 Identities=10% Similarity=0.066 Sum_probs=100.2
Q ss_pred HHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChh-hHHHHHHh
Q 010548 27 SLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSY 104 (507)
Q Consensus 27 SLin~l~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~-s~~~~~~~ 104 (507)
+|+.+++.+.|. ..+.++...... ..+..++ ++.+||| ++++..+.+.+++++|++|+|||++++. ++..+..
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~- 106 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK- 106 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH-
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH-
Confidence 688888888887 565554443221 2222223 7899999 8889999999999999999999999997 6777765
Q ss_pred HHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHH
Q 010548 105 WLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYA 171 (507)
Q Consensus 105 ~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i 171 (507)
|+..++.. ++|+++|+||+|+.+.+.+ ++...++..++...++++|||++|.||+++|..+
T Consensus 107 ~l~~~~~~--~~piilv~NK~DL~~~~~v----~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l 167 (301)
T 1u0l_A 107 FLVLAEKN--ELETVMVINKMDLYDEDDL----RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYL 167 (301)
T ss_dssp HHHHHHHT--TCEEEEEECCGGGCCHHHH----HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHC--CCCEEEEEeHHHcCCchhH----HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHh
Confidence 98888764 8999999999999753221 2344555555421379999999999999988653
No 153
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.70 E-value=7.9e-17 Score=171.66 Aligned_cols=161 Identities=17% Similarity=0.196 Sum_probs=111.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCC-------CCCCC-----CCCeeeC-----Ccc---cCCceEEEEEeCCCCc
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPE-------KVPPV-----HAPTRLP-----PDF---YPDRVPVTIIDTSSSL 70 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~-------~~~~~-----~~~~t~~-----~~~---~~~~~~~~i~Dt~G~~ 70 (507)
+..+|+|+|+.++|||||+++|+...... .+... ..+.|+. ..+ +...+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45789999999999999999998632110 01000 1122221 111 2335889999999999
Q ss_pred cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI 150 (507)
Q Consensus 71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (507)
+|...+..+++.+|++|+|+|++++.+.+.... |...+. . ++|+|+|+||+|+...+ .......+...++..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~~-~--~ipiIvViNKiDl~~a~----~~~v~~ei~~~lg~~ 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAME-M--DLEVVPVLNKIDLPAAD----PERVAEEIEDIVGID 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHHH-T--TCEEEEEEECTTSTTCC----HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH-C--CCCEEEeeeccCccccc----HHHHHHHHHHHhCCC
Confidence 999999999999999999999999877777654 554443 3 78999999999997642 233445565555431
Q ss_pred -CcEEEeCcccCCCchHHHHHHHHHHcCCC
Q 010548 151 -ETCVECSATTMIQVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 151 -~~~~~~SA~~g~gi~~l~~~i~~~i~~~~ 179 (507)
..++++||++|.|++++++.|.+.+..+.
T Consensus 155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 155 ATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp CTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred cceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 25899999999999999999999886554
No 154
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.70 E-value=1.2e-16 Score=169.93 Aligned_cols=161 Identities=14% Similarity=0.176 Sum_probs=113.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC--CCC-----CCCCC-----CCCeeeC-----Ccc---cCCceEEEEEeCCCCc
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATES--VPE-----KVPPV-----HAPTRLP-----PDF---YPDRVPVTIIDTSSSL 70 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~--~~~-----~~~~~-----~~~~t~~-----~~~---~~~~~~~~i~Dt~G~~ 70 (507)
+..+|+|+|+.++|||||+++|+... +.. .+... ..+.|+. ..+ +...+.+++|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 45789999999999999999998632 110 00000 1122221 111 2335789999999999
Q ss_pred cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI 150 (507)
Q Consensus 71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (507)
+|......+++.+|++|+|+|++++.+.+.... |.... .. ++|+|+|+||+|+...+ .......+...++..
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~-~~~a~-~~--~ipiIvviNKiDl~~a~----~~~v~~el~~~lg~~ 156 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVAN-FWKAV-EQ--DLVIIPVINKIDLPSAD----VDRVKKQIEEVLGLD 156 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHH-HHHHH-HT--TCEEEEEEECTTSTTCC----HHHHHHHHHHTSCCC
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHH-HC--CCCEEEEEeccCccccC----HHHHHHHHHHhhCCC
Confidence 999888999999999999999999988777664 55443 33 79999999999997642 233445555555431
Q ss_pred -CcEEEeCcccCCCchHHHHHHHHHHcCCC
Q 010548 151 -ETCVECSATTMIQVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 151 -~~~~~~SA~~g~gi~~l~~~i~~~i~~~~ 179 (507)
.+++++||++|.||+++++.|.+.+..+.
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 24899999999999999999999886554
No 155
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.70 E-value=4.7e-17 Score=167.44 Aligned_cols=165 Identities=17% Similarity=0.155 Sum_probs=108.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc--------------------c--CC----ceEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF--------------------Y--PD----RVPVT 62 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~--------------------~--~~----~~~~~ 62 (507)
..+.++|+++|+.++|||||+++|++............+.|+...+ . .. ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 3456899999999999999999999653211111111222221111 0 01 26899
Q ss_pred EEeCCCCccchhhhHHhhccCCEEEEEEeCCCh----hhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhh
Q 010548 63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQ----STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEE 138 (507)
Q Consensus 63 i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~----~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~ 138 (507)
+|||||++.|.......+..+|++|+|+|++++ ++.+.+. .++... ..|+++|+||+|+..........+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-----~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM-----ALQIIG-QKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH-----HHHHHT-CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH-----HHHHcC-CCcEEEEEECccCCCHHHHHHHHH
Confidence 999999988887777788899999999999964 3444332 233332 368999999999976422101112
Q ss_pred hhHHHHHHh-cccCcEEEeCcccCCCchHHHHHHHHHHcCCC
Q 010548 139 VMGPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 139 ~~~~~~~~~-~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~~ 179 (507)
.+..+.... ....+++++||++|.|++++++.|.+.+..+.
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~ 202 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK 202 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 233333321 11237999999999999999999998775543
No 156
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.70 E-value=3.8e-17 Score=167.81 Aligned_cols=166 Identities=15% Similarity=0.198 Sum_probs=114.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcC--------CCCCC--CCCC----CCCeeeC---CcccCCceEEEEEeCCCCcc
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATE--------SVPEK--VPPV----HAPTRLP---PDFYPDRVPVTIIDTSSSLE 71 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~--------~~~~~--~~~~----~~~~t~~---~~~~~~~~~~~i~Dt~G~~~ 71 (507)
.++.++|+++|++|+|||||+++|++. .+... .... ..+.|+. ..+...+..+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 356799999999999999999999873 11100 0000 1112211 12345678899999999999
Q ss_pred chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCc-cchhhhhHHHHHHhcc
Q 010548 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE 149 (507)
Q Consensus 72 ~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~ 149 (507)
|......+++.+|++|+|+|++++...+... |+..++.. ++| +++|+||+|+...... .........+...++.
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~--~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQTRE--HILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHHHH--HHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 9888889999999999999999876544432 66666665 788 8999999999752111 0112344555555542
Q ss_pred ---cCcEEEeCcccCCC------------------chHHHHHHHHHHcCC
Q 010548 150 ---IETCVECSATTMIQ------------------VPDVFYYAQKAVLHP 178 (507)
Q Consensus 150 ---~~~~~~~SA~~g~g------------------i~~l~~~i~~~i~~~ 178 (507)
..+++++||++|.| +.++++.|.+.+..+
T Consensus 164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 24799999999987 777887777765433
No 157
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.69 E-value=1.6e-16 Score=164.45 Aligned_cols=156 Identities=17% Similarity=0.118 Sum_probs=105.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC--CCC----------CCCCC------------------CCeeeCC---ccc
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESV--PEK----------VPPVH------------------APTRLPP---DFY 55 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~--~~~----------~~~~~------------------~~~t~~~---~~~ 55 (507)
..+.++|+++|++|+|||||+++|++... ... .+++. .+.|+.. .+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 34568999999999999999999986541 110 00110 1112111 123
Q ss_pred CCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCC-cEEEEEecccCCCCCCc-
Q 010548 56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKV-PIIVAGCKLDLRGDHNA- 133 (507)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~-piilv~NK~Dl~~~~~~- 133 (507)
..+..+.+|||||+++|...+..++..+|++|+|+|++++...+... ++..++.. +. |+|+|+||+|+.+....
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~--~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR--HSYIASLL--GIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCEEEEEEECTTTTTSCHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEEcCcCCcccHHH
Confidence 45678999999999999888888999999999999999875444332 55555554 44 69999999999763211
Q ss_pred -cchhhhhHHHHHHhc---ccCcEEEeCcccCCCchHHH
Q 010548 134 -TSLEEVMGPIMQQFR---EIETCVECSATTMIQVPDVF 168 (507)
Q Consensus 134 -~~~~~~~~~~~~~~~---~~~~~~~~SA~~g~gi~~l~ 168 (507)
....+....+.+.++ ...+++++||++|.|+++++
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 012234455555555 11378999999999999854
No 158
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.69 E-value=9.2e-17 Score=168.59 Aligned_cols=156 Identities=17% Similarity=0.120 Sum_probs=100.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC----------------------------CCCCCCCeeeC---CcccCCc
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK----------------------------VPPVHAPTRLP---PDFYPDR 58 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~----------------------------~~~~~~~~t~~---~~~~~~~ 58 (507)
.+.+||+++|++|+|||||+++|++...... ......++|+. ..+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 3468999999999999999999986521000 00011122211 1233567
Q ss_pred eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHH-----HHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc
Q 010548 59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSR-----LSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA 133 (507)
Q Consensus 59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~-----~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~ 133 (507)
..+.||||||++++......+++.+|++|+|+|++++.++.. ........+... ...|+|+|+||+|+.+.+..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTCHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccchHH
Confidence 899999999999999999999999999999999999754322 111133333333 13579999999999864322
Q ss_pred cchh---hhhHHHHHHhcc---cCcEEEeCcccCCCchHH
Q 010548 134 TSLE---EVMGPIMQQFRE---IETCVECSATTMIQVPDV 167 (507)
Q Consensus 134 ~~~~---~~~~~~~~~~~~---~~~~~~~SA~~g~gi~~l 167 (507)
..+ ..+..+...++. ..+++++||++|.|+.++
T Consensus 190 -~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 190 -RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp -HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred -HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 222 223333333332 237899999999999864
No 159
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.69 E-value=6.8e-17 Score=176.08 Aligned_cols=232 Identities=12% Similarity=0.072 Sum_probs=148.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcC--CCCCC-------CCCC------CCCeeeCC---cccCCceEEEEEeCCCCc
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATE--SVPEK-------VPPV------HAPTRLPP---DFYPDRVPVTIIDTSSSL 70 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~--~~~~~-------~~~~------~~~~t~~~---~~~~~~~~~~i~Dt~G~~ 70 (507)
..+..+|+|+|++|+|||||+|+|+.. .+... .... ..++|+.. .+.+.++.+++|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 355789999999999999999999952 21100 0000 11222221 233457899999999999
Q ss_pred cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI 150 (507)
Q Consensus 71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (507)
++......+++.+|++|+|+|++++.+..... ++..+... ++|+++|+||+|+.... .......+...++..
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~--~~~~~~~~--~~p~ilviNK~Dl~~~~----~~~~~~~l~~~l~~~ 158 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTET--VWRQATTY--GVPRIVFVNKMDKLGAN----FEYSVSTLHDRLQAN 158 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCCEEEEEECTTSTTCC----HHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHH--HHHHHHHc--CCCEEEEEECCCccccc----hHHHHHHHHHHhCCC
Confidence 99888999999999999999999987777655 34456555 79999999999997642 233445555555431
Q ss_pred --CcEEEeCcccCCCchHHHHHHHHHHcCCC-C--CCCc-----cchhcccHHHHHHHHHHHhhccCC------CCCccC
Q 010548 151 --ETCVECSATTMIQVPDVFYYAQKAVLHPT-A--PLFD-----HDEQTLKPRCVRALKRIFIICDHD------MDGALN 214 (507)
Q Consensus 151 --~~~~~~SA~~g~gi~~l~~~i~~~i~~~~-~--~~~~-----~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~ 214 (507)
...+++|+ +.|+..+++.+........ . ..+. .......+..+..+.+.....|++ ++..++
T Consensus 159 ~~~~~ipisa--~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~ 236 (693)
T 2xex_A 159 AAPIQLPIGA--EDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEIS 236 (693)
T ss_dssp EEESEEEECC--GGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCC
T ss_pred ceeEEeeccc--CCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCC
Confidence 24688888 6667666655433222111 0 0000 000011222333333333323321 355688
Q ss_pred hhhhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCCc
Q 010548 215 DAELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGV 250 (507)
Q Consensus 215 ~~el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~~ 250 (507)
.+++....++ +|++++...+++.+++.|.+.+|+-.
T Consensus 237 ~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~ 282 (693)
T 2xex_A 237 VSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPL 282 (693)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGG
T ss_pred HHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCch
Confidence 8888877764 68899999999999999999999743
No 160
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.69 E-value=1e-16 Score=170.99 Aligned_cols=159 Identities=19% Similarity=0.194 Sum_probs=106.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CCCCCeeeCCc--------------ccCCceEEEEEeCCCCccc
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVP----PVHAPTRLPPD--------------FYPDRVPVTIIDTSSSLEN 72 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~----~~~~~~t~~~~--------------~~~~~~~~~i~Dt~G~~~~ 72 (507)
+..+|+|+|++|+|||||+++|++..+....+ ........... +......+++|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 45799999999999999999999765432211 11111111100 1112236999999999999
Q ss_pred hhhhHHhhccCCEEEEEEeCCC---hhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCcc--------------c
Q 010548 73 KGKLNEELKRADAVVLTYACNQ---QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT--------------S 135 (507)
Q Consensus 73 ~~~~~~~~~~ad~il~V~D~~~---~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~--------------~ 135 (507)
..+...+++.+|++|+|+|+++ +.+++.+. .++.. ++|+++|+||+|+....... .
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-----~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-----HHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-----HHHHc--CCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9988889999999999999999 45554433 34444 79999999999997532100 0
Q ss_pred h----hhhhHHHHHHh----------------cccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548 136 L----EEVMGPIMQQF----------------REIETCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 136 ~----~~~~~~~~~~~----------------~~~~~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
. .+....+...+ +...+++++||++|.|+++++++|...+.
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 00011111111 12237999999999999999999987653
No 161
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.68 E-value=3.3e-17 Score=167.77 Aligned_cols=164 Identities=16% Similarity=0.145 Sum_probs=114.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC-------CCCC--CCC----CCCCeeeCC---cccCCceEEEEEeCCCCccchh
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATES-------VPEK--VPP----VHAPTRLPP---DFYPDRVPVTIIDTSSSLENKG 74 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~-------~~~~--~~~----~~~~~t~~~---~~~~~~~~~~i~Dt~G~~~~~~ 74 (507)
+.+||+++|++++|||||+++|++.. +... ... ...+.|+.. .+...+..+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998741 1000 000 012333221 2345678899999999998888
Q ss_pred hhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCc-cchhhhhHHHHHHhcc---
Q 010548 75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE--- 149 (507)
Q Consensus 75 ~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~--- 149 (507)
.+..+++.+|++|+|+|++++...+... ++..++.. ++| +++|+||+|+...... ....++...+...++.
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e--~l~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTRE--HLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 8888999999999999999875554433 33555554 788 7899999999752111 0122344556665552
Q ss_pred cCcEEEeCcccCCC----------chHHHHHHHHHHcCC
Q 010548 150 IETCVECSATTMIQ----------VPDVFYYAQKAVLHP 178 (507)
Q Consensus 150 ~~~~~~~SA~~g~g----------i~~l~~~i~~~i~~~ 178 (507)
..+++++||++|.| +.++++.|.+.+..+
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence 23799999999775 889999988876544
No 162
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.67 E-value=1.2e-16 Score=149.55 Aligned_cols=84 Identities=18% Similarity=0.384 Sum_probs=69.4
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.|||++||++|||||||++||+++.|...+.||.+.++..+.+...+..+++.||||+|+++|.+++ ..|+++++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~--~~~~~~a~~~ 89 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLI--PSYIRDSAAA 89 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGH--HHHHTTCSEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHH--HHHhccccEE
Confidence 45899999999999999999999999999999999999988888898888999999999999999998 7899999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 90 ilv~di 95 (216)
T 4dkx_A 90 VVVYDI 95 (216)
T ss_dssp EEEEET
T ss_pred EEEeec
Confidence 999996
No 163
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.67 E-value=1.2e-16 Score=155.33 Aligned_cols=158 Identities=16% Similarity=0.101 Sum_probs=86.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCC-C-------CCCCCCeeeCCcc--cCCceEEEEEeCCCCcc-------ch
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-V-------PPVHAPTRLPPDF--YPDRVPVTIIDTSSSLE-------NK 73 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~-------~~~~~~~t~~~~~--~~~~~~~~i~Dt~G~~~-------~~ 73 (507)
..++|+|+|.+|||||||+|+|++...... + .++.........+ ....+.+.+|||||+.. +.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 368999999999999999999987664322 2 1111111111222 23346999999999742 22
Q ss_pred hhh-------HHhhcc-------------CCEEEEEEeCCC-hhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC
Q 010548 74 GKL-------NEELKR-------------ADAVVLTYACNQ-QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132 (507)
Q Consensus 74 ~~~-------~~~~~~-------------ad~il~V~D~~~-~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~ 132 (507)
... ..+++. +|+++++++.+. +....+ ..+++.+.. ++|+|+|+||+|+.....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d--~~~l~~l~~---~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD--IEFMKRLHE---KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH--HHHHHHHTT---TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH--HHHHHHHhc---cCCEEEEEeccCCCCHHH
Confidence 222 334443 789999997665 322233 236666655 799999999999865322
Q ss_pred ccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548 133 ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i 175 (507)
.......+.......+ .+++++||+++.|+.++++.|.+.+
T Consensus 162 ~~~~~~~i~~~l~~~~--i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 162 CQQFKKQIMKEIQEHK--IKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHTT--CCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHcC--CeEEcCCCCCChhHHHHHHHHhcCC
Confidence 2011112222222333 2689999999999999999998764
No 164
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.67 E-value=1.3e-16 Score=173.88 Aligned_cols=232 Identities=11% Similarity=0.087 Sum_probs=144.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCC----CCC-----CC------CCCeeeC---CcccCCceEEEEEeCCCCc
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPE----KVP-----PV------HAPTRLP---PDFYPDRVPVTIIDTSSSL 70 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~----~~~-----~~------~~~~t~~---~~~~~~~~~~~i~Dt~G~~ 70 (507)
..+..+|+|+|++|+|||||+++|+...... .+. .. ..+.|+. ..+.+.++.+++|||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 4557899999999999999999998421100 000 00 1122221 1223457899999999999
Q ss_pred cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI 150 (507)
Q Consensus 71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (507)
++......+++.+|++|+|+|++++.+...... |. .+... ++|+++|+||+|+.... .......+...++..
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~-~~~~~--~~p~ivviNKiD~~~~~----~~~~~~~l~~~l~~~ 160 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WR-QAEKY--KVPRIAFANKMDKTGAD----LWLVIRTMQERLGAR 160 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HH-HHHHT--TCCEEEEEECTTSTTCC----HHHHHHHHHHTTCCC
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HH-HHHHc--CCCEEEEEECCCcccCC----HHHHHHHHHHHhCCC
Confidence 999899999999999999999999888777652 44 45555 79999999999997642 334455555555431
Q ss_pred --CcEEEeCcccCCCchHHHHHHHHHHcCCC-C--C-----CCccchhcccHHHHHHHHHHHhhccCC------CCCccC
Q 010548 151 --ETCVECSATTMIQVPDVFYYAQKAVLHPT-A--P-----LFDHDEQTLKPRCVRALKRIFIICDHD------MDGALN 214 (507)
Q Consensus 151 --~~~~~~SA~~g~gi~~l~~~i~~~i~~~~-~--~-----~~~~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~ 214 (507)
...+++|+ +.++..+++.+........ . . ..........+..+..+.+.....|+. +++.++
T Consensus 161 ~~~~~~Pi~~--~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~ 238 (691)
T 1dar_A 161 PVVMQLPIGR--EDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPT 238 (691)
T ss_dssp EEECEEEESC--GGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCC
T ss_pred ccceeccccC--CCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCC
Confidence 13578887 4444444333322111110 0 0 000000111122333333333222221 245688
Q ss_pred hhhhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCCc
Q 010548 215 DAELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGV 250 (507)
Q Consensus 215 ~~el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~~ 250 (507)
.+++....++ ++++++...+++.+++.|.+.+|+-.
T Consensus 239 ~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~ 284 (691)
T 1dar_A 239 EEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPL 284 (691)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChh
Confidence 8888777764 67889999999999999999999754
No 165
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.66 E-value=1.7e-16 Score=147.51 Aligned_cols=161 Identities=12% Similarity=0.040 Sum_probs=99.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC-CcccCCceEEEEEeCCCCcc----------chhhhHH
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP-PDFYPDRVPVTIIDTSSSLE----------NKGKLNE 78 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 78 (507)
.+..+|+++|++|||||||+|+|++..+...+.+. .+.+.. ..+...+ .+.+|||||... +......
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~-~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKT-PGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCC-CccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 45689999999999999999999987643332221 122211 0111111 578999999742 1222333
Q ss_pred hh---ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEE
Q 010548 79 EL---KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE 155 (507)
Q Consensus 79 ~~---~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (507)
++ +.++++++|+|++++.+..... +...+... ++|+++|+||+|+............+..++...+....+++
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~~~--~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQ--MIEWAVDS--NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET 177 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHH--HHHHHHHc--CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEE
Confidence 44 5789999999999876654321 33344444 78999999999987532110011233444444433336789
Q ss_pred eCcccCCCchHHHHHHHHHHc
Q 010548 156 CSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 156 ~SA~~g~gi~~l~~~i~~~i~ 176 (507)
+||+++.|++++++.|.+.+.
T Consensus 178 ~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 178 FSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CBTTTTBSHHHHHHHHHHHHC
T ss_pred EeecCCCCHHHHHHHHHHHHh
Confidence 999999999999999988653
No 166
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.9e-16 Score=168.43 Aligned_cols=155 Identities=16% Similarity=0.132 Sum_probs=102.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------------CC----------------CCCeee---CCcccCCc
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP------------PV----------------HAPTRL---PPDFYPDR 58 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~------------~~----------------~~~~t~---~~~~~~~~ 58 (507)
.+.+||+++|++|||||||+++|++........ .. ..++|+ ...+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457899999999999999999999764211110 00 012231 22334567
Q ss_pred eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhh---H---HHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC
Q 010548 59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQST---L---SRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132 (507)
Q Consensus 59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s---~---~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~ 132 (507)
..+.||||||++.+...+..+++.+|++|+|+|++++.. + ..... .+..+... ...|+|+|+||+|+...+.
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e-~l~~~~~l-gi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLASSL-GIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHH-HHHHHHTT-TCCEEEEEEECTTTTTTCH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHH-HHHHHHHc-CCCeEEEEEecccccchhH
Confidence 899999999999998888889999999999999987521 0 01111 22233333 1245999999999986432
Q ss_pred ccch---hhhhHHHHHHhcc---cCcEEEeCcccCCCchHH
Q 010548 133 ATSL---EEVMGPIMQQFRE---IETCVECSATTMIQVPDV 167 (507)
Q Consensus 133 ~~~~---~~~~~~~~~~~~~---~~~~~~~SA~~g~gi~~l 167 (507)
. .. ...+..+...++. ..++++|||++|.||.++
T Consensus 323 ~-~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 Q-RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp H-HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred H-HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2 11 2233334444432 237999999999999876
No 167
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.66 E-value=1.7e-16 Score=160.40 Aligned_cols=145 Identities=17% Similarity=0.132 Sum_probs=104.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (507)
Q Consensus 14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~ 90 (507)
+|+++|++|+|||||+++|+.. +.|+. ..+...+..+.+|||||+++|.......++.+|++|+|+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~-----------giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVv 91 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK-----------GTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCI 91 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE-----------EEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhC-----------CEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEE
Confidence 8999999999999999999821 12221 123455678999999999999888888899999999999
Q ss_pred eCCChhhHHHHHHhHHHHHHhcCCCCcE-EEEEe-cccCCCCCCccchhhhhHHHHHHhc-ccCcEEE--eCccc---CC
Q 010548 91 ACNQQSTLSRLSSYWLPELRRLEIKVPI-IVAGC-KLDLRGDHNATSLEEVMGPIMQQFR-EIETCVE--CSATT---MI 162 (507)
Q Consensus 91 D~~~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~N-K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~SA~~---g~ 162 (507)
| +... .....+ ++..++.. ++|. |+|+| |+|+ +........+++..+...++ ...++++ +||++ |.
T Consensus 92 d-~~g~-~~qt~e-~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~ 165 (370)
T 2elf_A 92 P-PQGL-DAHTGE-CIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE 165 (370)
T ss_dssp C-TTCC-CHHHHH-HHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred c-CCCC-cHHHHH-HHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence 9 5543 333333 66666665 6787 89999 9999 43211001123333333332 1237999 99999 99
Q ss_pred CchHHHHHHHHHH
Q 010548 163 QVPDVFYYAQKAV 175 (507)
Q Consensus 163 gi~~l~~~i~~~i 175 (507)
|++++++.|.+.+
T Consensus 166 gi~~L~~~l~~~~ 178 (370)
T 2elf_A 166 GVDELKARINEVA 178 (370)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhc
Confidence 9999999998765
No 168
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.66 E-value=1.9e-15 Score=164.81 Aligned_cols=234 Identities=12% Similarity=0.090 Sum_probs=142.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC--CCCC--CC-----CC------CCCeeeC---CcccCCc-------eEEEE
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK--VP-----PV------HAPTRLP---PDFYPDR-------VPVTI 63 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~--~~~~--~~-----~~------~~~~t~~---~~~~~~~-------~~~~i 63 (507)
..+..+|+|+|+.|+|||||+++|+... +... .. .. ..+.|+. ..+.+.+ +.++|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 4557899999999999999999997532 1110 00 00 1122211 1122233 89999
Q ss_pred EeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHH
Q 010548 64 IDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI 143 (507)
Q Consensus 64 ~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 143 (507)
|||||+.+|......+++.+|++|+|+|++++.+..... ++..+... ++|+++|+||+|+.... ..+....+
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~--~~~~~~~~--~ip~ilviNKiD~~~~~----~~~~~~~l 158 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET--VWRQANKY--KVPRIAFVNKMDRMGAN----FLKVVNQI 158 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH--HHHHHHHc--CCCEEEEEeCCCccccc----HHHHHHHH
Confidence 999999999888999999999999999999986665544 33444444 79999999999987642 33445555
Q ss_pred HHHhcccCcEEEeCcccCCCchHHHHHHHHHHcCCCC-C---CC-----ccchhcccHHHHHHHHHHHhhccCC------
Q 010548 144 MQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTA-P---LF-----DHDEQTLKPRCVRALKRIFIICDHD------ 208 (507)
Q Consensus 144 ~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~~~-~---~~-----~~~~~~~~~~~~~~l~~~~~~~d~~------ 208 (507)
...++.....+.+....+.++..+++.+......... . .+ .........+++..|.+.....|++
T Consensus 159 ~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l 238 (704)
T 2rdo_7 159 KTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYL 238 (704)
T ss_pred HHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 5555542212222222223332233322222211110 0 00 0000111122333444444444433
Q ss_pred CCCccChhhhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCCc
Q 010548 209 MDGALNDAELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGV 250 (507)
Q Consensus 209 ~d~~l~~~el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~~ 250 (507)
++..++.+++....++ +|++++...+++.+++.|.+.+|+-.
T Consensus 239 ~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~ 290 (704)
T 2rdo_7 239 GGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPV 290 (704)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChh
Confidence 3567889998887774 67889999999999999999999743
No 169
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.65 E-value=1.3e-16 Score=165.14 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=104.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC--CCCCCC--------------------------CCCCCCeeeC---CcccCCc
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATE--SVPEKV--------------------------PPVHAPTRLP---PDFYPDR 58 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~--~~~~~~--------------------------~~~~~~~t~~---~~~~~~~ 58 (507)
++.++|+++|++|+|||||+++|+.. .+.... .....+.|+. ..+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45689999999999999999999864 221100 0001122322 2344667
Q ss_pred eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHH------hHHHHHHhcCCC-CcEEEEEecccCCCCC
Q 010548 59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSS------YWLPELRRLEIK-VPIIVAGCKLDLRGDH 131 (507)
Q Consensus 59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~------~~~~~l~~~~~~-~piilv~NK~Dl~~~~ 131 (507)
..+.+|||||+++|...+..+++.+|++|+|+|+++ .+++.... .....++.. + .|+++|+||+|+.+..
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSST
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCcc
Confidence 899999999999999888899999999999999998 56664332 122333333 4 4699999999997631
Q ss_pred --Cc--cchhhhhHHHHHHhcc---cCcEEEeCcccCCCchHHH
Q 010548 132 --NA--TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPDVF 168 (507)
Q Consensus 132 --~~--~~~~~~~~~~~~~~~~---~~~~~~~SA~~g~gi~~l~ 168 (507)
+. ....+.+..+...++. ..+++++||++|.|+.+++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 11 0123445555555542 1379999999999998654
No 170
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.65 E-value=3.5e-16 Score=173.84 Aligned_cols=166 Identities=17% Similarity=0.180 Sum_probs=113.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC-------CCC--CCCC----CCCCeeeC---CcccCCceEEEEEeCCCCccc
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATES-------VPE--KVPP----VHAPTRLP---PDFYPDRVPVTIIDTSSSLEN 72 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~-------~~~--~~~~----~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~ 72 (507)
.++.++|+++|++++|||||+++|++.. +.. .... ...++|+. ..+...+..+.+|||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4567999999999999999999998641 100 0010 11223322 224456789999999999999
Q ss_pred hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCc-cchhhhhHHHHHHhcc-
Q 010548 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE- 149 (507)
Q Consensus 73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~- 149 (507)
......+++.+|++|+|+|++++...+... ++..++.. ++| +|+|+||+|+.+.... ....+++..+...++.
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QTrE--hL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQTRE--HILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTHHH--HHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHHHH--HHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 888888999999999999999875444332 55556555 788 8999999999753211 0122345555655542
Q ss_pred --cCcEEEeCcccC--------CCchHHHHHHHHHHcCC
Q 010548 150 --IETCVECSATTM--------IQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 150 --~~~~~~~SA~~g--------~gi~~l~~~i~~~i~~~ 178 (507)
..+++++||++| .|+.++++.|.+.+..+
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P 487 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP 487 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence 247999999999 46899999988866543
No 171
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.63 E-value=1.9e-15 Score=164.07 Aligned_cols=116 Identities=20% Similarity=0.196 Sum_probs=86.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC---------------CCeee---CCcccCCceEEEEEeCCCCc
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH---------------APTRL---PPDFYPDRVPVTIIDTSSSL 70 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~---------------~~~t~---~~~~~~~~~~~~i~Dt~G~~ 70 (507)
..+..+|+|+|+.|+|||||+++|++........... .+.++ ...+....+.+++|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 4567899999999999999999999544321111100 01111 11223457889999999999
Q ss_pred cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCC
Q 010548 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128 (507)
Q Consensus 71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 128 (507)
.+......+++.+|++++|+|++++....... ++..++.. ++|+++|+||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~--~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTER--AWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHHH--HHHHHHHc--cCCEEEEecCCchh
Confidence 99888899999999999999998876555443 66666665 79999999999987
No 172
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.63 E-value=4.9e-17 Score=174.03 Aligned_cols=163 Identities=18% Similarity=0.153 Sum_probs=88.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC----------------------------CCCCCCCeeeC---CcccCC
Q 010548 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK----------------------------VPPVHAPTRLP---PDFYPD 57 (507)
Q Consensus 9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~----------------------------~~~~~~~~t~~---~~~~~~ 57 (507)
....++|+|+|++|+|||||+++|+....... .....+++|+. ..+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 34568999999999999999999974210000 00001233322 223345
Q ss_pred ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChh---hH--HHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCC
Q 010548 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS---TL--SRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDH 131 (507)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~---s~--~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~ 131 (507)
+..+.||||||+..|...+..++..+|++|+|+|++++. .+ .......+..+... ++| +|+|+||+|+....
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~~ 331 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSWS 331 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTTC
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEecccccccc
Confidence 678999999999999888888999999999999998642 11 10011133334444 565 99999999997632
Q ss_pred Cccchhh---hhHHHH-HHhcc---cCcEEEeCcccCCCch--------------HHHHHHHHH
Q 010548 132 NATSLEE---VMGPIM-QQFRE---IETCVECSATTMIQVP--------------DVFYYAQKA 174 (507)
Q Consensus 132 ~~~~~~~---~~~~~~-~~~~~---~~~~~~~SA~~g~gi~--------------~l~~~i~~~ 174 (507)
.. .... .+..+. ..++. ..+++++||++|.||. .|++.|...
T Consensus 332 ~~-~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~ 394 (592)
T 3mca_A 332 ED-RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL 394 (592)
T ss_dssp HH-HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred HH-HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence 21 1222 222222 22232 1268999999999998 677776553
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.63 E-value=3.1e-16 Score=163.22 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=103.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC--CCCCC----------------C----CC------CCCCeeeC---CcccCCc
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATE--SVPEK----------------V----PP------VHAPTRLP---PDFYPDR 58 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~--~~~~~----------------~----~~------~~~~~t~~---~~~~~~~ 58 (507)
++.++|+++|++|+|||||+++|++. .+... . .. ...+.|+. ..+...+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45799999999999999999999864 11100 0 00 00122221 1234567
Q ss_pred eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhh---HH---HHHHhHHHHHHhcCCCCc-EEEEEecccCCCCC
Q 010548 59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQST---LS---RLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDH 131 (507)
Q Consensus 59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s---~~---~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~ 131 (507)
..+.+|||||+++|......++..+|++|+|+|++++.. |+ ...+ ++..++.. ++| +|+|+||+|+.+..
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~~~--~v~~iivviNK~Dl~~~~ 161 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFTL--GVRQLIVAVNKMDSVKWD 161 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHHT--TCCEEEEEEECGGGGTTC
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHHHc--CCCeEEEEEEccccccCC
Confidence 889999999999998888899999999999999998632 21 2222 33334444 565 99999999997421
Q ss_pred Cc--cchhhhhHHHHHHhcc---cCcEEEeCcccCCCchHH
Q 010548 132 NA--TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPDV 167 (507)
Q Consensus 132 ~~--~~~~~~~~~~~~~~~~---~~~~~~~SA~~g~gi~~l 167 (507)
.. ......+..+...++. ..+++++||++|.|+.++
T Consensus 162 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 162 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 11 0122334455555542 137999999999999764
No 174
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.62 E-value=1.3e-15 Score=165.98 Aligned_cols=162 Identities=15% Similarity=0.129 Sum_probs=107.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCee--------eCCccc------------------CCc----
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTR--------LPPDFY------------------PDR---- 58 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t--------~~~~~~------------------~~~---- 58 (507)
..++|+|+|.+|||||||+|+|++..+... .+++...+. ....+. ..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 468999999999999999999998875332 222210000 000000 000
Q ss_pred --------------------------eEEEEEeCCCCccc---hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHH
Q 010548 59 --------------------------VPVTIIDTSSSLEN---KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPEL 109 (507)
Q Consensus 59 --------------------------~~~~i~Dt~G~~~~---~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l 109 (507)
..+.+|||||.... ......+++.+|++|+|+|++++.+..+... |...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~l 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRY-LENYI 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHHT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHH-HHHHH
Confidence 46899999997653 3445578899999999999999888777653 55555
Q ss_pred HhcCCCCcEEEEEecccCCCCCCccchh---h------hhHH-----HHHHhc------ccCcEEEeCcc----------
Q 010548 110 RRLEIKVPIIVAGCKLDLRGDHNATSLE---E------VMGP-----IMQQFR------EIETCVECSAT---------- 159 (507)
Q Consensus 110 ~~~~~~~piilv~NK~Dl~~~~~~~~~~---~------~~~~-----~~~~~~------~~~~~~~~SA~---------- 159 (507)
... ++|+++|+||+|+...... ..+ . .... +....+ ...++++|||+
T Consensus 227 ~~~--~~~iiiVlNK~Dl~~~~~~-~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 227 KGR--GLTVFFLVNAWDQVRESLI-DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp TTS--CCCEEEEEECGGGGGGGCS-STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred Hhh--CCCEEEEEECccccccccc-ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 544 6899999999998654211 000 0 0111 111111 11268999999
Q ss_pred ----cCCCchHHHHHHHHHHc
Q 010548 160 ----TMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 160 ----~g~gi~~l~~~i~~~i~ 176 (507)
++.|++++++.|.+.+.
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988764
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.62 E-value=3.6e-15 Score=157.29 Aligned_cols=117 Identities=12% Similarity=0.090 Sum_probs=83.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CCC--------CCCeeeC---CcccCCceEEEEEeCC
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-----------PPV--------HAPTRLP---PDFYPDRVPVTIIDTS 67 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~-----------~~~--------~~~~t~~---~~~~~~~~~~~i~Dt~ 67 (507)
.+.++|+|+|++|+|||||+++|+........ .+. ..+.++. ..+...++.+++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 35689999999999999999999964211100 000 1112211 1234567899999999
Q ss_pred CCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (507)
Q Consensus 68 G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 130 (507)
|+..+......+++.+|++|+|+|++++...... .++..++.. ++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~--~~~~~~~~~--~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR--KLMEVTRLR--DTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH--HHHHHHTTT--TCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHH--HHHHHHHHc--CCCEEEEEcCcCCccc
Confidence 9999988888999999999999999987543332 244445444 7999999999999764
No 176
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.60 E-value=2.1e-15 Score=149.41 Aligned_cols=160 Identities=15% Similarity=0.133 Sum_probs=98.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCC---CeeeCC-------------------------------
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHA---PTRLPP------------------------------- 52 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~---~~~~~~---~~t~~~------------------------------- 52 (507)
....+|+|+|++|||||||+|+|++..+... ..+..+ .++...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4567999999999999999999999876222 112222 111100
Q ss_pred -------------c----------ccCCceEEEEEeCCCCcc-------------chhhhHHhhccCCEEEEEEeCCChh
Q 010548 53 -------------D----------FYPDRVPVTIIDTSSSLE-------------NKGKLNEELKRADAVVLTYACNQQS 96 (507)
Q Consensus 53 -------------~----------~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~il~V~D~~~~~ 96 (507)
. .......+.+|||||... +......+++.+|++++|+|.++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 0 112346799999999754 3345557899999999999974332
Q ss_pred -hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc-CcEEE---eCccc---CCCchHHH
Q 010548 97 -TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ETCVE---CSATT---MIQVPDVF 168 (507)
Q Consensus 97 -s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~SA~~---g~gi~~l~ 168 (507)
+..... .+...+... ++|+++|+||+|+...... ..+ .+....... ..+++ +||.+ +.|+.+++
T Consensus 182 ~~~~~~~-~i~~~~~~~--~~~~i~v~NK~Dl~~~~~~--~~~---~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~ 253 (315)
T 1jwy_B 182 LANSDAL-QLAKEVDPE--GKRTIGVITKLDLMDKGTD--AME---VLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESL 253 (315)
T ss_dssp STTCSHH-HHHHHHCSS--CSSEEEEEECTTSSCSSCC--CHH---HHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHH
T ss_pred hhhhHHH-HHHHHhCCC--CCcEEEEEcCcccCCcchH--HHH---HHhCCCccCCCCeEEEecCChhhhccCCCHHHHH
Confidence 111111 245555444 7999999999999765331 111 111111110 13444 55556 78999999
Q ss_pred HHHHHHHcC
Q 010548 169 YYAQKAVLH 177 (507)
Q Consensus 169 ~~i~~~i~~ 177 (507)
+.+.+.+..
T Consensus 254 ~~~~~~~~~ 262 (315)
T 1jwy_B 254 KSEILYFKN 262 (315)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 998887754
No 177
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.59 E-value=4.1e-15 Score=143.51 Aligned_cols=120 Identities=15% Similarity=0.121 Sum_probs=83.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhc------
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK------ 81 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------ 81 (507)
++.++|+++|.+|||||||+|+|++..+.. ..++..... ....+...+..+.+|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRP-VMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCC-EEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceee-EEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 467999999999999999999999987422 122211111 12233456779999999999877655544443
Q ss_pred ---cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCC---CCcEEEEEecccCCCCC
Q 010548 82 ---RADAVVLTYACNQQSTLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGDH 131 (507)
Q Consensus 82 ---~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~~ 131 (507)
.+|++++|+|++... +......|+..++.... ..|+++|+||+|+...+
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~ 167 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPD 167 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCST
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCC
Confidence 889999999987654 44333347777766422 25999999999996543
No 178
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.59 E-value=7.9e-16 Score=160.54 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=90.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC--CCC--------------------CCCC------CCCCeeeCC---cccCCc
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPE--------------------KVPP------VHAPTRLPP---DFYPDR 58 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~--~~~--------------------~~~~------~~~~~t~~~---~~~~~~ 58 (507)
.+.++|+++|+.++|||||+++|+... +.. +... ...+.|+.. .+...+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 346899999999999999999997522 110 0000 012233222 233457
Q ss_pred eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChh---hHH---HHHHhHHHHHHhcCCCCc-EEEEEecccCCCCC
Q 010548 59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS---TLS---RLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDH 131 (507)
Q Consensus 59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~---s~~---~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~ 131 (507)
..+.+|||||++.|...+...+..+|++|+|+|++++. +|+ ...+ .+..+... ++| +|+|+||+|+....
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e-~l~~~~~~--~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTRE-HAVLARTQ--GINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHH-HHHHHHHT--TCSSEEEEEECTTSTTCS
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHH-HHHHHHHc--CCCEEEEEEECccCCCcc
Confidence 88999999999999888888999999999999999863 222 1111 22223333 677 99999999996422
Q ss_pred C--c--cchhhhhHHHHHHh-cc----cCcEEEeCcccCCCchHHH
Q 010548 132 N--A--TSLEEVMGPIMQQF-RE----IETCVECSATTMIQVPDVF 168 (507)
Q Consensus 132 ~--~--~~~~~~~~~~~~~~-~~----~~~~~~~SA~~g~gi~~l~ 168 (507)
. . ......+..+...+ +. ..+++++||++|.|+.+++
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1 0 01122344444444 21 1369999999999998866
No 179
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.59 E-value=2.2e-16 Score=159.22 Aligned_cols=159 Identities=17% Similarity=0.177 Sum_probs=80.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCC-----CCCCee-----eCCcccCCceEEEEEeCCCC-------ccch
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVP-EKVPP-----VHAPTR-----LPPDFYPDRVPVTIIDTSSS-------LENK 73 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~-~~~~~-----~~~~~t-----~~~~~~~~~~~~~i~Dt~G~-------~~~~ 73 (507)
.++|+|+|++|||||||+|+|.+.... ....+ ..++.+ ...........+.+|||||+ +.+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 589999999999999999998765432 21110 001111 11111222458999999998 5555
Q ss_pred hhhH-------HhhccCCEE-----------EEEEeCCC-hhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCcc
Q 010548 74 GKLN-------EELKRADAV-----------VLTYACNQ-QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT 134 (507)
Q Consensus 74 ~~~~-------~~~~~ad~i-----------l~V~D~~~-~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~ 134 (507)
.+.. .+++.++++ ++||++++ ..++..+...|+..+ ..++|+|+|+||+|+...+.+.
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev~ 193 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERE 193 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHHH
Confidence 5554 555544332 24444443 445555554455554 3479999999999997644330
Q ss_pred chhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548 135 SLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
...+.+..++..++. +++++||++|.| ++.|..+.+.+.
T Consensus 194 ~~k~~i~~~~~~~~i--~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 194 RLKKRILDEIEEHNI--KIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHTTCC-C--CSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC--CEEeCCCcCCCc-chhHHHHHHHHH
Confidence 111233444444442 689999999998 777777776664
No 180
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.56 E-value=1e-14 Score=141.29 Aligned_cols=120 Identities=17% Similarity=0.106 Sum_probs=81.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhH-------Hh-
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN-------EE- 79 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~- 79 (507)
.+.++|+++|.+|||||||+|+|++..+... .++.... .....+...+..+.+|||||+.++..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPR-PVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSS-CEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccee-eEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 3578999999999999999999998875321 2211111 11223345678899999999876543222 12
Q ss_pred -hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-CC--CcEEEEEecccCCCCC
Q 010548 80 -LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IK--VPIIVAGCKLDLRGDH 131 (507)
Q Consensus 80 -~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~--~piilv~NK~Dl~~~~ 131 (507)
.+.+|++|+|+|++.. ++......|+..+.... .+ +|+++|+||+|+....
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 3479999999998653 34444334777776542 22 6999999999987644
No 181
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.56 E-value=3.9e-15 Score=149.99 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=95.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCC----------------------eeeC--------------
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAP----------------------TRLP-------------- 51 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~---~~~~~~~----------------------~t~~-------------- 51 (507)
...+|+|+|++|||||||+|+|++..+.+. ..+..+. ++..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999886422 2222222 1100
Q ss_pred ---Cc----------ccCCceEEEEEeCCCCcc-------------chhhhHHhhccCC-EEEEEEeCCChhhHHHHHHh
Q 010548 52 ---PD----------FYPDRVPVTIIDTSSSLE-------------NKGKLNEELKRAD-AVVLTYACNQQSTLSRLSSY 104 (507)
Q Consensus 52 ---~~----------~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad-~il~V~D~~~~~s~~~~~~~ 104 (507)
.. .......+.+|||||... +..+...+++.++ ++++|+|++....-.....
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~- 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK- 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH-
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH-
Confidence 00 011246799999999742 2335556776665 5555666654322222211
Q ss_pred HHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhH--HHHHHhcccCcEEEeCcccCCCchHHHHHHHH
Q 010548 105 WLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG--PIMQQFREIETCVECSATTMIQVPDVFYYAQK 173 (507)
Q Consensus 105 ~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~ 173 (507)
++..+... +.|+++|+||+|+.+.... ...... .+....+. .+++++||++|.|++++++.+.+
T Consensus 189 i~~~~~~~--~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~~-~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDPQ--GQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGY-IGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCTT--CTTEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCE-EECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCcC--CCceEEEeccccccCcchh--HHHHHhCCcccccCCc-eEEEeCCcccccccccHHHHHHH
Confidence 44444433 7999999999999765331 111111 00001111 25688999999999999999876
No 182
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.56 E-value=1.1e-14 Score=141.63 Aligned_cols=98 Identities=11% Similarity=0.051 Sum_probs=64.3
Q ss_pred EEeCCCCc-cchhhhHHhhccCCEEEEEEeCCChhhHHH--HHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhh
Q 010548 63 IIDTSSSL-ENKGKLNEELKRADAVVLTYACNQQSTLSR--LSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV 139 (507)
Q Consensus 63 i~Dt~G~~-~~~~~~~~~~~~ad~il~V~D~~~~~s~~~--~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~ 139 (507)
|-..||+. .....+...++.+|+++.|+|++++.+..+ +.. |+ .++|+++|+||+|+.+.. ..+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~-~l-------~~kp~ilVlNK~DL~~~~----~~~~ 70 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIED-IL-------KNKPRIMLLNKADKADAA----VTQQ 70 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHH-HC-------SSSCEEEEEECGGGSCHH----HHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHH-HH-------CCCCEEEEEECcccCCHH----HHHH
Confidence 34567765 344566788999999999999999877643 222 22 479999999999997521 1111
Q ss_pred hHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHH
Q 010548 140 MGPIMQQFREIETCVECSATTMIQVPDVFYYAQKA 174 (507)
Q Consensus 140 ~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~ 174 (507)
...+.+..+ .+++.+||+++.|++++++.+.+.
T Consensus 71 ~~~~~~~~g--~~~i~iSA~~~~gi~~L~~~i~~~ 103 (282)
T 1puj_A 71 WKEHFENQG--IRSLSINSVNGQGLNQIVPASKEI 103 (282)
T ss_dssp HHHHHHTTT--CCEEECCTTTCTTGGGHHHHHHHH
T ss_pred HHHHHHhcC--CcEEEEECCCcccHHHHHHHHHHH
Confidence 122222222 268999999999999999877553
No 183
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.54 E-value=1.9e-14 Score=142.48 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=92.3
Q ss_pred CCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC----------ChhhHHHHHHhHHHHHHhc--CCCCcEEEEEe
Q 010548 56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN----------QQSTLSRLSSYWLPELRRL--EIKVPIIVAGC 123 (507)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~----------~~~s~~~~~~~~~~~l~~~--~~~~piilv~N 123 (507)
.+++++.+|||+|++.++..+..++++++++|||||++ +..++.+... |+..+... ..++|++|++|
T Consensus 158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~-~~~~i~~~~~~~~~piiLv~N 236 (340)
T 4fid_A 158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIA-VFKDIMTNEFLKGAVKLIFLN 236 (340)
T ss_dssp SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHH-HHHHHHHCGGGTTSEEEEEEE
T ss_pred eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHH-HHHHHhhhhccCCCeEEEEEE
Confidence 35678999999999999999999999999999999998 6788888776 55555442 35799999999
Q ss_pred cccCCCCC---------------CccchhhhhHHHHHHh------c------------------ccCcEEEeCcccCCCc
Q 010548 124 KLDLRGDH---------------NATSLEEVMGPIMQQF------R------------------EIETCVECSATTMIQV 164 (507)
Q Consensus 124 K~Dl~~~~---------------~~~~~~~~~~~~~~~~------~------------------~~~~~~~~SA~~g~gi 164 (507)
|+|+..++ .. ..++....+..++ . ....++++||++..||
T Consensus 237 K~DL~~eki~~~~l~~~fp~y~g~~-~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv 315 (340)
T 4fid_A 237 KMDLFEEKLTKVPLNTIFPEYTGGD-NAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNI 315 (340)
T ss_dssp CHHHHHHHHHHSCGGGTCTTCCCTT-CHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHH
T ss_pred CchhhhhhcCcchHHHhhhhhcCCC-CHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHH
Confidence 99986421 01 2344455555666 0 1125789999999999
Q ss_pred hHHHHHHHHHHc
Q 010548 165 PDVFYYAQKAVL 176 (507)
Q Consensus 165 ~~l~~~i~~~i~ 176 (507)
..+|..+.+.++
T Consensus 316 ~~vF~~v~~~Il 327 (340)
T 4fid_A 316 KRVFMLAVDVIM 327 (340)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 184
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.54 E-value=2.3e-14 Score=141.30 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=89.5
Q ss_pred CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC----------ChhhHHHHHHhHHHHHHhc--CCCCcEEEEEec
Q 010548 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN----------QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124 (507)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~----------~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK 124 (507)
+++++++|||+|++.++..+..++++++++|+|||++ +..++.+... |+..+... ..+.|++|++||
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~-~~~~i~~~~~~~~~~iiL~~NK 243 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLNK 243 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHTSGGGTTCEEEEEEEC
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH-HHHHHhhhhccCCceEEEEEEC
Confidence 4678999999999999999999999999999999665 6677777665 65555442 257999999999
Q ss_pred ccCCCCC----------------CccchhhhhHHHHHHhcc-------cCcEEEeCcccCCCchHHHHHHHHHHcC
Q 010548 125 LDLRGDH----------------NATSLEEVMGPIMQQFRE-------IETCVECSATTMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 125 ~Dl~~~~----------------~~~~~~~~~~~~~~~~~~-------~~~~~~~SA~~g~gi~~l~~~i~~~i~~ 177 (507)
+|+..++ .. ..++....+..+|.. ...++++||+++.||.++|..+.+.++.
T Consensus 244 ~DL~~~ki~~~~l~~~fp~y~g~~~-~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 244 KDLLEEKIMYSHLVDYFPEYDGPQR-DAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 318 (327)
T ss_dssp HHHHHHHTTTSCGGGTCTTCCSCSS-CHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhccchHhhhchhccCCCC-CHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence 9986532 12 333333344333321 1246899999999999999999988764
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.54 E-value=9.7e-15 Score=147.52 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=97.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC--Ce--------------e-eC----------------------
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--PT--------------R-LP---------------------- 51 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~--~~--------------t-~~---------------------- 51 (507)
...+|+|+|++|||||||+|+|++..+.+....... .+ . ..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 345999999999999999999999876333211110 00 0 00
Q ss_pred ------Cc----------ccCCceEEEEEeCCCCccc-------------hhhhHHhhccCCEEEEEEeCCChhhHHHHH
Q 010548 52 ------PD----------FYPDRVPVTIIDTSSSLEN-------------KGKLNEELKRADAVVLTYACNQQSTLSRLS 102 (507)
Q Consensus 52 ------~~----------~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~il~V~D~~~~~s~~~~~ 102 (507)
.. .......+.+|||||+..+ ......+++.+|++|+|+|..+......
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~-- 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--
Confidence 00 0122456899999998765 4556688999999999998765432221
Q ss_pred HhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHH
Q 010548 103 SYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (507)
Q Consensus 103 ~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 170 (507)
.|...++... .+.|+|+|+||+|+...... . .+........++ .+|+++|++++.++++.+..
T Consensus 191 -~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 191 -DAIKISREVDPSGDRTFGVLTKIDLMDKGTD-A-VEILEGRSFKLK--YPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp -HHHHHHHHSCTTCTTEEEEEECGGGCCTTCC-S-HHHHTTSSSCCS--SCCEEECCCCHHHHHTTCCH
T ss_pred -HHHHHHHHhcccCCCEEEEEeCCccCCCccc-H-HHHHcCcccccc--CCeEEEEECChHHhccCCCH
Confidence 1444444433 26899999999999865433 1 121222222222 26899999999988776544
No 186
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=5.2e-14 Score=130.10 Aligned_cols=86 Identities=23% Similarity=0.388 Sum_probs=77.9
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
..+.+||+++|++|||||||+++|+++.+...+.++.+.++..+.+..++...++.+|||+|++++..+. ..+++.+|
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d 100 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSIT--QSYYRSAN 100 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH--GGGSTTCS
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHHhcCC
Confidence 3567999999999999999999999999988888899988888888888777899999999999999887 68999999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 101 ~~i~v~D~ 108 (201)
T 2ew1_A 101 ALILTYDI 108 (201)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999995
No 187
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.52 E-value=5e-14 Score=131.50 Aligned_cols=85 Identities=16% Similarity=0.274 Sum_probs=72.6
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
....+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+...+....+.+|||+|++++..++ ..+++++|
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d 100 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVR--PLCYSDSD 100 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTG--GGGCTTCS
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHH--HHHcCCCe
Confidence 34569999999999999999999999999988888888776 4556777778899999999999999888 68999999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 101 ~~i~v~d~ 108 (214)
T 3q3j_B 101 AVLLCFDI 108 (214)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999996
No 188
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.52 E-value=3.1e-14 Score=131.53 Aligned_cols=88 Identities=23% Similarity=0.387 Sum_probs=68.9
Q ss_pred cccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccc
Q 010548 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (507)
Q Consensus 418 ~~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 497 (507)
+.....+||+++|++|||||||+++|+++.+...+.+|.+.++....+..++...++.+|||+|++++..++ ..+++.
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ 101 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTIT--QSYYRS 101 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHH--HHHHTT
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHH--HHHHhh
Confidence 344567999999999999999999999999988888888888877778887667899999999999999887 789999
Q ss_pred ccEEEEEEeC
Q 010548 498 CDVTIFVYDR 507 (507)
Q Consensus 498 ad~vilv~D~ 507 (507)
+|++++|||+
T Consensus 102 ~d~iilv~D~ 111 (201)
T 2hup_A 102 ANGAILAYDI 111 (201)
T ss_dssp CSEEEEEEET
T ss_pred CCEEEEEEEC
Confidence 9999999995
No 189
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.51 E-value=5.5e-14 Score=128.61 Aligned_cols=88 Identities=23% Similarity=0.317 Sum_probs=78.5
Q ss_pred cccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccc
Q 010548 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (507)
Q Consensus 418 ~~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 497 (507)
+...+.+||+++|++|||||||+++|++..+...+.++.+..+....+...+...++.+|||+|++++..++ ..+++.
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~ 97 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT--SAYYRG 97 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTH--HHHHTT
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhh--HHHhcc
Confidence 344567999999999999999999999999998888898888877777777778899999999999998877 688999
Q ss_pred ccEEEEEEeC
Q 010548 498 CDVTIFVYDR 507 (507)
Q Consensus 498 ad~vilv~D~ 507 (507)
+|++++|||+
T Consensus 98 ~d~vi~v~D~ 107 (193)
T 2oil_A 98 AVGALLVFDL 107 (193)
T ss_dssp CCEEEEEEET
T ss_pred CCEEEEEEEC
Confidence 9999999995
No 190
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.51 E-value=1.3e-13 Score=140.77 Aligned_cols=158 Identities=20% Similarity=0.194 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeeCCcccCC-ceEEEEEeCCCCccc----hhhh---HHhhccC
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLEN----KGKL---NEELKRA 83 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~~~t~~~~~~~~-~~~~~i~Dt~G~~~~----~~~~---~~~~~~a 83 (507)
-.|+|+|++|||||||+++|++..... .++.+.-..+.. .+... ...+.+|||||..+. ..+. ...++.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G-~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee-EEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 458999999999999999999875311 111110000111 11222 367999999997532 1122 2345679
Q ss_pred CEEEEEEeCCChhhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (507)
Q Consensus 84 d~il~V~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (507)
+.+++|+|++ ...+.++.. |..++.... .+.|.++|+||+|+... . ....+.......+ .+++.+||++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~-g~~el~~la~aL~~~P~ILVlNKlDl~~~-~---~~~~l~~~l~~~g--~~vi~iSA~~ 308 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEE-E---AVKALADALAREG--LAVLPVSALT 308 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCH-H---HHHHHHHHHHTTT--SCEEECCTTT
T ss_pred HhhhEEeCCc-cCCHHHHHH-HHHHHHHHhHHhhcCCEEEEEECCChhhH-H---HHHHHHHHHHhcC--CeEEEEECCC
Confidence 9999999998 556666654 666655542 25899999999998753 1 1122222222222 2689999999
Q ss_pred CCCchHHHHHHHHHHcCCC
Q 010548 161 MIQVPDVFYYAQKAVLHPT 179 (507)
Q Consensus 161 g~gi~~l~~~i~~~i~~~~ 179 (507)
+.|++++++.|.+.+....
T Consensus 309 g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 309 GAGLPALKEALHALVRSTP 327 (416)
T ss_dssp CTTHHHHHHHHHHHHHTSC
T ss_pred ccCHHHHHHHHHHHHHhcc
Confidence 9999999999999886543
No 191
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.51 E-value=1.1e-13 Score=136.05 Aligned_cols=108 Identities=17% Similarity=0.126 Sum_probs=78.9
Q ss_pred CceEEEEEe-CCC-----CccchhhhHHhhccCCEEEEEEeCCChh-hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCC
Q 010548 57 DRVPVTIID-TSS-----SLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129 (507)
Q Consensus 57 ~~~~~~i~D-t~G-----~~~~~~~~~~~~~~ad~il~V~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 129 (507)
+.+.+.++| +.| ++++..+.+.+++++|++++|+|++++. ++..+.. |+..+... ++|+++|+||+|+.+
T Consensus 48 D~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~-~l~~~~~~--~~~~ilV~NK~DL~~ 124 (302)
T 2yv5_A 48 DYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDN-MLVVYEYF--KVEPVIVFNKIDLLN 124 (302)
T ss_dssp CEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHH-HHHHHHHT--TCEEEEEECCGGGCC
T ss_pred eEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHH-HHHHHHhC--CCCEEEEEEcccCCC
Confidence 345566665 333 4567777788999999999999999986 8887775 88877775 899999999999975
Q ss_pred CCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHH
Q 010548 130 DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (507)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 170 (507)
...+ ...+....+....+. +++++||++|.|++++++.
T Consensus 125 ~~~v-~~~~~~~~~~~~~g~--~~~~~SA~~g~gi~~L~~~ 162 (302)
T 2yv5_A 125 EEEK-KELERWISIYRDAGY--DVLKVSAKTGEGIDELVDY 162 (302)
T ss_dssp HHHH-HHHHHHHHHHHHTTC--EEEECCTTTCTTHHHHHHH
T ss_pred cccc-HHHHHHHHHHHHCCC--eEEEEECCCCCCHHHHHhh
Confidence 4221 112233334444442 6899999999999998865
No 192
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.51 E-value=6.4e-14 Score=126.26 Aligned_cols=86 Identities=28% Similarity=0.442 Sum_probs=75.1
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
..+.+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++++..++ ..+++.+|
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d 83 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTIT--STYYRGTH 83 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCC--GGGGTTCS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhH--HHHhccCC
Confidence 3467999999999999999999999999988888999988888888888777899999999999998887 68999999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 84 ~~i~v~d~ 91 (181)
T 3tw8_B 84 GVIVVYDV 91 (181)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999996
No 193
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.50 E-value=6.7e-14 Score=148.27 Aligned_cols=116 Identities=11% Similarity=0.078 Sum_probs=85.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCC-----------------CCCCC--CCCCeeeC---CcccCCceEEEEEeCCC
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVP-----------------EKVPP--VHAPTRLP---PDFYPDRVPVTIIDTSS 68 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~-----------------~~~~~--~~~~~t~~---~~~~~~~~~~~i~Dt~G 68 (507)
+..+|+|+|+.++|||||..+|+...-. ..... ...++|+. ..+.++++.++|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 4568999999999999999999732210 00000 11122322 23457889999999999
Q ss_pred CccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548 69 SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (507)
Q Consensus 69 ~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 130 (507)
+.+|.......++-+|++|+|+|+..+-..+... .+....+. ++|+|+++||+|....
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~--v~~~a~~~--~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK--LMDVCRMR--ATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCCEEEEEECTTSCCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHH--HHHHHHHh--CCceEEEEecccchhc
Confidence 9999999999999999999999999986665544 44666666 8999999999998764
No 194
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.50 E-value=8.6e-14 Score=123.93 Aligned_cols=84 Identities=24% Similarity=0.311 Sum_probs=76.2
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||+++|+++.+...+.++.+..+....+...+...++.+|||+|++++..++ ..+++.+|++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--~~~~~~~d~~ 82 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA--PMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH--HHHHTTCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhh--HHhccCCCEE
Confidence 46899999999999999999999999988888888888877778888778899999999999998877 6889999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 83 i~v~d~ 88 (170)
T 1r2q_A 83 IVVYDI 88 (170)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999995
No 195
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.50 E-value=6.4e-14 Score=128.08 Aligned_cols=87 Identities=23% Similarity=0.390 Sum_probs=73.7
Q ss_pred ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (507)
Q Consensus 419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a 498 (507)
...+.+||+++|++|||||||+++|+++++...+.++.+.++....+..++...++.+|||+|++++..++ ..+++.+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~ 94 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSIT--RSYYRGA 94 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCC--HHHHTTC
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhH--HHHhccC
Confidence 34567999999999999999999999999988888888888888888888777899999999999998877 7899999
Q ss_pred cEEEEEEeC
Q 010548 499 DVTIFVYDR 507 (507)
Q Consensus 499 d~vilv~D~ 507 (507)
|++++|||+
T Consensus 95 d~ii~v~d~ 103 (191)
T 2a5j_A 95 AGALLVYDI 103 (191)
T ss_dssp SEEEEEEET
T ss_pred CEEEEEEEC
Confidence 999999996
No 196
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.50 E-value=1.4e-13 Score=139.09 Aligned_cols=100 Identities=18% Similarity=0.133 Sum_probs=69.8
Q ss_pred CCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc-cchhhhhHHHHHH
Q 010548 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-TSLEEVMGPIMQQ 146 (507)
Q Consensus 68 G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~ 146 (507)
.++.|......+++.++++++|+|++++.+ .|.+.+.+...++|+++|+||+|+...... ....+........
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~ 130 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEE 130 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHH
Confidence 367788888888999999999999999763 265556655558999999999999764321 0011112222334
Q ss_pred hccc-CcEEEeCcccCCCchHHHHHHHH
Q 010548 147 FREI-ETCVECSATTMIQVPDVFYYAQK 173 (507)
Q Consensus 147 ~~~~-~~~~~~SA~~g~gi~~l~~~i~~ 173 (507)
.+.. ..++.+||++|.|++++++.+.+
T Consensus 131 ~g~~~~~v~~iSA~~g~gi~~L~~~I~~ 158 (369)
T 3ec1_A 131 LGLCPVDVCLVSAAKGIGMAKVMEAINR 158 (369)
T ss_dssp TTCCCSEEEECBTTTTBTHHHHHHHHHH
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHh
Confidence 4421 25899999999999999887643
No 197
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.50 E-value=9.2e-14 Score=126.06 Aligned_cols=85 Identities=24% Similarity=0.454 Sum_probs=77.0
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
++.+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++++..++ ..+++.+|+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 85 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVT--RSYYRGAAG 85 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH--HTTSTTCSE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHHhcCCE
Confidence 457999999999999999999999999988888898888888888888677799999999999999887 689999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 86 ~i~v~d~ 92 (186)
T 2bme_A 86 ALLVYDI 92 (186)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999995
No 198
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.50 E-value=9e-14 Score=126.79 Aligned_cols=87 Identities=21% Similarity=0.344 Sum_probs=77.6
Q ss_pred ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (507)
Q Consensus 419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a 498 (507)
..+..+||+++|++|||||||+++|+++.+...+.++.+.++....+...+...++.+|||+|++++..++ ..+++.+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~ 95 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTIT--TAYYRGA 95 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSG--GGGGTTC
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhH--HHhccCC
Confidence 34567999999999999999999999999988888888888877777777778899999999999998877 6899999
Q ss_pred cEEEEEEeC
Q 010548 499 DVTIFVYDR 507 (507)
Q Consensus 499 d~vilv~D~ 507 (507)
|++++|||+
T Consensus 96 d~ii~v~d~ 104 (189)
T 2gf9_A 96 MGFLLMYDI 104 (189)
T ss_dssp SEEEEEEET
T ss_pred CEEEEEEEC
Confidence 999999995
No 199
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.49 E-value=1e-13 Score=123.61 Aligned_cols=85 Identities=20% Similarity=0.317 Sum_probs=70.6
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
++.+||+++|++|||||||+++|+++.+...+.++.+..+....+..++....+.+|||+|++++..++ ..+++.+|+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~ 81 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG--PIYYRDSNG 81 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------CCSSTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhH--HHHhccCCE
Confidence 356999999999999999999999999988888888888887888888788899999999999998877 678999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 82 ~i~v~d~ 88 (170)
T 1z08_A 82 AILVYDI 88 (170)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999995
No 200
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=1.2e-13 Score=123.07 Aligned_cols=83 Identities=23% Similarity=0.360 Sum_probs=75.1
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+||+++|++|||||||+++|+++.+...+.++.+..+....+..++...++.+|||+|++++...+ ..+++.+|+++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--~~~~~~~d~~i 80 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA--PXYYRNAQAAL 80 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH--HHHHTTCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhh--hhhhccCcEEE
Confidence 5899999999999999999999999988888888888877777787777899999999999998877 68899999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 81 ~v~d~ 85 (170)
T 1ek0_A 81 VVYDV 85 (170)
T ss_dssp EEEET
T ss_pred EEEec
Confidence 99996
No 201
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.49 E-value=1.3e-13 Score=127.09 Aligned_cols=85 Identities=20% Similarity=0.339 Sum_probs=77.0
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
.+.+||+++|++|||||||+++|++..+...+.++.+.++....+...+...++.+|||+|.+++..++ ..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 83 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTIT--TAYYRGAMG 83 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH--HTTGGGCSE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchH--HHhhcCCCE
Confidence 457999999999999999999999999988888888888887778877778899999999999999887 689999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 84 ii~v~d~ 90 (203)
T 1zbd_A 84 FILMYDI 90 (203)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999996
No 202
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.49 E-value=1e-13 Score=123.27 Aligned_cols=84 Identities=14% Similarity=0.341 Sum_probs=76.1
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+||+++|++|||||||+++|+++.+...+.++.+.++....+..++...++.+|||+|++++..+. ..+++.+|++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~~ 81 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT--KAYYRGAQAC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC--HHHHTTCCEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHH--HHHhcCCCEE
Confidence 46899999999999999999999999988888898888888888887677899999999999988877 6899999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 82 i~v~d~ 87 (168)
T 1z2a_A 82 VLVFST 87 (168)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999995
No 203
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.49 E-value=6.9e-14 Score=128.08 Aligned_cols=87 Identities=22% Similarity=0.393 Sum_probs=70.9
Q ss_pred ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (507)
Q Consensus 419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a 498 (507)
.....+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++++..++ ..+++.+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~ 99 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT--SAYYRSA 99 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH--HHHHHHC
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHH--HHHhcCC
Confidence 34567999999999999999999999999988888898888888888888677899999999999998887 6899999
Q ss_pred cEEEEEEeC
Q 010548 499 DVTIFVYDR 507 (507)
Q Consensus 499 d~vilv~D~ 507 (507)
|++++|||+
T Consensus 100 d~iilV~D~ 108 (192)
T 2il1_A 100 KGIILVYDI 108 (192)
T ss_dssp SEEEEEEET
T ss_pred CEEEEEEEC
Confidence 999999995
No 204
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.49 E-value=2.5e-14 Score=145.59 Aligned_cols=83 Identities=23% Similarity=0.325 Sum_probs=46.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCC--CCeee-CC-------------------cccC-CceEEEEEeCCC
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVH--APTRL-PP-------------------DFYP-DRVPVTIIDTSS 68 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~--~~~t~-~~-------------------~~~~-~~~~~~i~Dt~G 68 (507)
+||+|+|.||||||||+|+|++.... .+++.+. +.... .. .+.. ....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987621 1222111 11111 00 0011 136899999999
Q ss_pred Cccc----hhhhH---HhhccCCEEEEEEeCCCh
Q 010548 69 SLEN----KGKLN---EELKRADAVVLTYACNQQ 95 (507)
Q Consensus 69 ~~~~----~~~~~---~~~~~ad~il~V~D~~~~ 95 (507)
+... ..+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8542 22222 457999999999999875
No 205
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.49 E-value=8e-14 Score=124.22 Aligned_cols=84 Identities=29% Similarity=0.449 Sum_probs=70.1
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||+++|+++++...+.++.+.++....+..++....+.+|||+|++++..++ ..+++.+|++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~~ 79 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT--TAYYRGAMGI 79 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCC--HHHHTTEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhH--HHHhccCCEE
Confidence 45899999999999999999999999988888888888888888888778899999999999998877 7899999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 80 i~v~d~ 85 (170)
T 1g16_A 80 ILVYDI 85 (170)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999995
No 206
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.49 E-value=1.1e-13 Score=126.25 Aligned_cols=85 Identities=22% Similarity=0.434 Sum_probs=76.1
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh-hhccchhhccccc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-KILSNKEALASCD 499 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~~~ad 499 (507)
.+.+||+++|++|||||||+++|+++.+...+.++.+.++....+..++...++.+|||+|++++. .++ ..+++.+|
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~d 95 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMV--QHYYRNVH 95 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTH--HHHHTTCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhh--HHHhcCCC
Confidence 456999999999999999999999999988888999888888888888677899999999999988 666 67899999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 96 ~iilv~D~ 103 (189)
T 1z06_A 96 AVVFVYDM 103 (189)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999995
No 207
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.49 E-value=1.4e-13 Score=124.18 Aligned_cols=85 Identities=21% Similarity=0.260 Sum_probs=76.7
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||+++|++|||||||+++|++.++...+.++.+..+....+...+...++.+|||+|++++..++ ..+++.+|+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~ 87 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA--PMYYRGAAA 87 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGT--HHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhh--HHHhccCCE
Confidence 456999999999999999999999999988888888888888778887777899999999999998887 688999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 88 ~i~v~d~ 94 (181)
T 2efe_B 88 AIIVFDV 94 (181)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999995
No 208
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.48 E-value=3.2e-13 Score=136.37 Aligned_cols=99 Identities=19% Similarity=0.102 Sum_probs=70.4
Q ss_pred CccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc-cchhhhhHHHHHHh
Q 010548 69 SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-TSLEEVMGPIMQQF 147 (507)
Q Consensus 69 ~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~ 147 (507)
.+.|...++.+.+.+|++++|+|++++. ..|.+.+++...++|+++|+||+|+...... ....+.........
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 4678888888999999999999999863 2377777776568999999999999754321 00111122233444
Q ss_pred cc-cCcEEEeCcccCCCchHHHHHHHH
Q 010548 148 RE-IETCVECSATTMIQVPDVFYYAQK 173 (507)
Q Consensus 148 ~~-~~~~~~~SA~~g~gi~~l~~~i~~ 173 (507)
+. ..+++.+||++|.|++++++.|.+
T Consensus 130 g~~~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 130 GLKPEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp TCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence 42 125899999999999999987643
No 209
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.48 E-value=1.2e-13 Score=127.66 Aligned_cols=85 Identities=27% Similarity=0.452 Sum_probs=77.4
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
+..+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++++..++ ..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 83 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT--SSYYRGSHG 83 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCC--GGGGTTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHH--HHhccCCCE
Confidence 456999999999999999999999999998888999988888888888777899999999999998887 689999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 84 vilv~d~ 90 (206)
T 2bcg_Y 84 IIIVYDV 90 (206)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999996
No 210
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.48 E-value=1.7e-14 Score=141.75 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=84.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC-CCCCCC-C-------CCCC--CeeeCCcccCCceEEEEEeCCCC-------ccch
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATE-SVPEKV-P-------PVHA--PTRLPPDFYPDRVPVTIIDTSSS-------LENK 73 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~-~~~~~~-~-------~~~~--~~t~~~~~~~~~~~~~i~Dt~G~-------~~~~ 73 (507)
.++|+|+|++|||||||+++|.+. .+.... + +... ..............+.+|||+|+ +.+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 589999999999999999999875 332221 0 1000 00011111233568999999998 4444
Q ss_pred hhhH-------Hhhcc-------------CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc
Q 010548 74 GKLN-------EELKR-------------ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA 133 (507)
Q Consensus 74 ~~~~-------~~~~~-------------ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~ 133 (507)
.... .+++. +++++++.+.+.. +++.....++..+ ..+.|+++|+||+|+...++.
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~l---~~~~~iilV~~K~Dl~~~~e~ 173 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKER 173 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHHH---TTTSCEEEEECCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHHH---HhcCCEEEEEEeCCCCCHHHH
Confidence 4443 34333 3445666554331 2333322233333 346899999999999764332
Q ss_pred cchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHHcCC
Q 010548 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (507)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~ 178 (507)
....+.+..++..++. +++++||++| |++++|..+.+.+...
T Consensus 174 ~~~~~~~~~~~~~~~~--~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 174 ERLKKRILDEIEEHNI--KIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHHHHTTC--CCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCC--eEEecCCccc-cccHHHHHHHHHhhcC
Confidence 1123455566666653 7899999999 9999999999887543
No 211
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.48 E-value=1.4e-13 Score=125.91 Aligned_cols=85 Identities=27% Similarity=0.455 Sum_probs=77.7
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
+..+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++++..++ ..+++.+|+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~ 91 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT--SSYYRGAHG 91 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTH--HHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhH--HHHHhhCCE
Confidence 467999999999999999999999999998888999988888888888777899999999999998887 789999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 92 ~i~v~d~ 98 (196)
T 3tkl_A 92 IIVVYDV 98 (196)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999995
No 212
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.48 E-value=1.5e-13 Score=123.56 Aligned_cols=85 Identities=18% Similarity=0.350 Sum_probs=72.8
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||+++|++|||||||+++|+++.+...+.++.+..+....+..++....+.+|||+|++++..++ ..+++.+|+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~ 82 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR--TPFYRGSDC 82 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHH--GGGGTTCSE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhH--HHHHhcCCE
Confidence 356899999999999999999999999988888888888877778888777899999999999999887 689999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 83 ~i~v~d~ 89 (177)
T 1wms_A 83 CLLTFSV 89 (177)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999995
No 213
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.48 E-value=1.7e-13 Score=124.38 Aligned_cols=84 Identities=20% Similarity=0.310 Sum_probs=73.0
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||+++|++|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|+++|..++ ..+++++|+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~ 81 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVR--PLSYPDSDA 81 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTG--GGGCTTCSE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhH--HhhcCCCcE
Confidence 45699999999999999999999999998888888876663 456677778899999999999998887 678999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 82 ~i~v~d~ 88 (184)
T 1m7b_A 82 VLICFDI 88 (184)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999996
No 214
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.48 E-value=1.8e-13 Score=121.96 Aligned_cols=84 Identities=25% Similarity=0.385 Sum_probs=75.8
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||+++|+++.+...+.++.+..+....+...+...++.+|||+|.+++..+. ..+++.+|++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--~~~~~~~~~~ 82 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA--PMYYRGSAAA 82 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGT--HHHHTTCSEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhccc--HhhCcCCCEE
Confidence 45899999999999999999999999888888888888877777787777899999999999998877 6889999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 83 i~v~d~ 88 (170)
T 1z0j_A 83 IIVYDI 88 (170)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999995
No 215
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.48 E-value=3.4e-13 Score=149.91 Aligned_cols=116 Identities=10% Similarity=0.075 Sum_probs=84.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC--------CC-----CCCCCeeeCC-----c--------------ccCC
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK--------VP-----PVHAPTRLPP-----D--------------FYPD 57 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--------~~-----~~~~~~t~~~-----~--------------~~~~ 57 (507)
.+..+|+|+|++|+|||||+++|+....... .. ....+.|+.. . .+..
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 3467999999999999999999986421000 00 0011112111 1 1233
Q ss_pred ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCC
Q 010548 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129 (507)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 129 (507)
++.++||||||+.+|...+..+++.+|++|+|+|++++.+++.... |.. +... ++|+++|+||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~-~~~~--~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQ-ALGE--RIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHH-HHHT--TCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHH-HHHc--CCCeEEEEECCCcch
Confidence 7899999999999999999999999999999999999988887653 443 3333 799999999999863
No 216
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.47 E-value=1.6e-13 Score=123.34 Aligned_cols=86 Identities=22% Similarity=0.437 Sum_probs=76.9
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
..+.+||+++|++|||||||+++|+++.+...+.++.+.++....+...+....+.+|||+|++++..++ ..+++.+|
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d 89 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT--RSYYRGAA 89 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHH--HHHHHTCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhH--HHHhccCC
Confidence 3457999999999999999999999999988888888888877777787777899999999999998877 68999999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 90 ~~i~v~d~ 97 (179)
T 1z0f_A 90 GALMVYDI 97 (179)
T ss_dssp EEEEEEET
T ss_pred EEEEEEeC
Confidence 99999996
No 217
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=2e-13 Score=124.89 Aligned_cols=85 Identities=22% Similarity=0.364 Sum_probs=76.8
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
.+.+||+++|++|||||||+++|+++.+...+.++.+..+....+...+...++.+|||+|++++..++ ..+++.+|+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~ 98 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLA--PMYYRGSAA 98 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGT--HHHHTTCSE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhh--HHhhccCCE
Confidence 456999999999999999999999999887888888888877778888788899999999999999887 689999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 99 iilV~d~ 105 (192)
T 2fg5_A 99 AVIVYDI 105 (192)
T ss_dssp EEEEEET
T ss_pred EEEEEeC
Confidence 9999995
No 218
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.47 E-value=1.7e-13 Score=123.15 Aligned_cols=84 Identities=19% Similarity=0.417 Sum_probs=76.2
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++++...+ ..+++.+|++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--~~~~~~~d~~ 90 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--PSYIRDSTVA 90 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGS--HHHHHTCSEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHH--HHHhcCCCEE
Confidence 45999999999999999999999999988888888888888888888777899999999999999887 6889999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 91 i~v~d~ 96 (179)
T 2y8e_A 91 VVVYDI 96 (179)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999996
No 219
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.47 E-value=7.8e-14 Score=128.65 Aligned_cols=86 Identities=26% Similarity=0.449 Sum_probs=66.8
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
.++.+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++++..++ ..+++.+|
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d 99 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVT--RSYYRGAA 99 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCC--HHHHTTCS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHH--HHHhccCC
Confidence 4567999999999999999999999999988888888888888888888777899999999999998877 68999999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 100 ~~i~v~d~ 107 (200)
T 2o52_A 100 GALLVYDI 107 (200)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999995
No 220
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.47 E-value=2e-13 Score=126.19 Aligned_cols=85 Identities=19% Similarity=0.387 Sum_probs=76.8
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||+++|++|||||||+++|++..+...+.++.+.++....+...+....+.+|||+|++++..++ ..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 83 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG--VAFYRGADC 83 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC--CGGGTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH--HHHHhCCcE
Confidence 356999999999999999999999999988888898888888888888778899999999999998877 678999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 84 ~i~v~d~ 90 (207)
T 1vg8_A 84 CVLVFDV 90 (207)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999995
No 221
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.47 E-value=5.2e-14 Score=126.66 Aligned_cols=85 Identities=21% Similarity=0.343 Sum_probs=74.5
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCC-CeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-GNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
.+.+||+++|++|||||||+++|+++.+...+.+|.+.++..+.+..++ ...++.+|||+|++++..++ ..+++++|
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--~~~~~~~d 81 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKML--DKYIYGAQ 81 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTH--HHHHTTCS
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchh--hHHHhhCC
Confidence 3569999999999999999999999998777778888778777787775 35789999999999998887 68999999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 82 ~~i~v~d~ 89 (178)
T 2hxs_A 82 GVLLVYDI 89 (178)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999996
No 222
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.47 E-value=8.1e-14 Score=128.32 Aligned_cols=87 Identities=21% Similarity=0.371 Sum_probs=67.1
Q ss_pred ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (507)
Q Consensus 419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a 498 (507)
...+.+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++++..++ ..+++.+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~ 101 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIA--KSYFRKA 101 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHH--HHHHHHC
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhH--HHHHhhC
Confidence 34457999999999999999999999999888888888888877778888777889999999999998887 6889999
Q ss_pred cEEEEEEeC
Q 010548 499 DVTIFVYDR 507 (507)
Q Consensus 499 d~vilv~D~ 507 (507)
|++++|||+
T Consensus 102 d~iilv~d~ 110 (199)
T 2p5s_A 102 DGVLLLYDV 110 (199)
T ss_dssp SEEEEEEET
T ss_pred CEEEEEEEC
Confidence 999999996
No 223
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.2e-13 Score=129.74 Aligned_cols=85 Identities=25% Similarity=0.384 Sum_probs=71.5
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||+++|++|||||||+++|++..+...+.++.+.++....+.+++....+.+|||+|++++..++ ..+++.+|+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~ 88 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT--SAYYRGAVG 88 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCC--GGGTTTCCE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhH--HHHhccCCE
Confidence 457999999999999999999999999998888999988888888888677899999999999999887 689999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 89 vilV~D~ 95 (223)
T 3cpj_B 89 ALIVYDI 95 (223)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 9999995
No 224
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.47 E-value=9.3e-14 Score=147.35 Aligned_cols=120 Identities=23% Similarity=0.229 Sum_probs=82.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-----eCCcc--------------------c--C----
Q 010548 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-----LPPDF--------------------Y--P---- 56 (507)
Q Consensus 8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-----~~~~~--------------------~--~---- 56 (507)
......+|+|+|.+|||||||+|+|++..+.....+..+.++ ..... . .
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 344578999999999999999999999886321111111111 00000 0 0
Q ss_pred Cc-----------eEEEEEeCCCCcc-----------chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCC
Q 010548 57 DR-----------VPVTIIDTSSSLE-----------NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI 114 (507)
Q Consensus 57 ~~-----------~~~~i~Dt~G~~~-----------~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~ 114 (507)
.+ ..+.+|||||... +......+++.+|++|+|+|+++......... |+..++..
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~-~l~~l~~~-- 217 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSE-AIGALRGH-- 217 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHH-HHHHTTTC--
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHH-HHHHHHhc--
Confidence 00 3689999999864 33555678899999999999988543344333 77766654
Q ss_pred CCcEEEEEecccCCCC
Q 010548 115 KVPIIVAGCKLDLRGD 130 (507)
Q Consensus 115 ~~piilv~NK~Dl~~~ 130 (507)
+.|+++|+||+|+...
T Consensus 218 ~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 218 EDKIRVVLNKADMVET 233 (550)
T ss_dssp GGGEEEEEECGGGSCH
T ss_pred CCCEEEEEECCCccCH
Confidence 6899999999999764
No 225
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.47 E-value=2.2e-13 Score=124.76 Aligned_cols=85 Identities=18% Similarity=0.310 Sum_probs=73.9
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
....+||+++|++|||||||+++|+++.+...+.+|.+..+.. .+...+....+.+|||+|++++..++ ..+++++|
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d 96 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLR--PLSYADSD 96 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTG--GGGCTTCS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHh--HhhccCCc
Confidence 4567999999999999999999999999988888888776654 56667677888999999999999887 68999999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 97 ~~i~v~d~ 104 (194)
T 3reg_A 97 VVLLCFAV 104 (194)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999996
No 226
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=1.7e-13 Score=125.20 Aligned_cols=84 Identities=25% Similarity=0.425 Sum_probs=76.5
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+||+++|++|||||||+++|++..+...+.++.+.++....+...+...++.+|||+|++++..++ ..+++.+|++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~i 91 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT--PSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH--HHHHTTCCEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhh--HHHhccCCEE
Confidence 46899999999999999999999999988888898888888888888778899999999999998877 6899999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 92 i~v~d~ 97 (195)
T 1x3s_A 92 ILVYDV 97 (195)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999996
No 227
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.46 E-value=2.4e-13 Score=124.94 Aligned_cols=85 Identities=24% Similarity=0.345 Sum_probs=74.6
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCe-----------------------------
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN----------------------------- 471 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~----------------------------- 471 (507)
++.+||+++|++|||||||+++|++..+...+.++.+.++....+...+..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 456999999999999999999999999988888888888888777777544
Q ss_pred --------EEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548 472 --------KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 472 --------~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
..+.+|||+|++++..+. ..+++.+|++++|||+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~i~v~D~ 126 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIV--PLYYRGATCAIVVFDI 126 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTH--HHHHTTCSEEEEEEET
T ss_pred cccCccceeEEEEEECCCcHHHHHHH--HHHhcCCCEEEEEEEC
Confidence 789999999999998877 6889999999999996
No 228
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.46 E-value=2.6e-13 Score=125.82 Aligned_cols=84 Identities=20% Similarity=0.307 Sum_probs=73.3
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+...+...++.+|||+|+++|..++ ..+++++|+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~ 102 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVR--PLSYPDSDA 102 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTG--GGGCTTCSE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHH--HhhccCCCE
Confidence 4569999999999999999999999999888888887666 4456777778899999999999998887 678999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 103 ~ilv~D~ 109 (205)
T 1gwn_A 103 VLICFDI 109 (205)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999996
No 229
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.46 E-value=2e-13 Score=126.72 Aligned_cols=86 Identities=27% Similarity=0.424 Sum_probs=75.6
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
....+||+++|++|||||||+++|++..+...+.++.+.++....+..++....+.+|||+|++++..++ ..+++.+|
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d 94 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT--TAYYRGAM 94 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCC--HHHHTTCS
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHhccCC
Confidence 3456999999999999999999999999988888888888888888888667889999999999998877 78999999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 95 ~ii~v~d~ 102 (213)
T 3cph_A 95 GIILVYDV 102 (213)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999995
No 230
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.46 E-value=3.4e-13 Score=122.89 Aligned_cols=85 Identities=15% Similarity=0.312 Sum_probs=74.8
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeE-EEEEEcCCC---------eEEEEEEecCCchhhhhhcc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYA-VNVVDQPGG---------NKKTLILQEIPEEGVKKILS 490 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~---------~~~~~i~Dt~G~~~~~~~~~ 490 (507)
+..+||+++|++|||||||+++|+++.+...+.++.+.++. .+.+...+. ..++.+|||+|++++..++
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~- 87 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT- 87 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH-
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH-
Confidence 45799999999999999999999999998888888887776 666666655 6789999999999999887
Q ss_pred chhhcccccEEEEEEeC
Q 010548 491 NKEALASCDVTIFVYDR 507 (507)
Q Consensus 491 ~~~~~~~ad~vilv~D~ 507 (507)
..+++++|++++|||+
T Consensus 88 -~~~~~~~d~~i~v~d~ 103 (195)
T 3bc1_A 88 -TAFFRDAMGFLLLFDL 103 (195)
T ss_dssp -HHTTTTCSEEEEEEET
T ss_pred -HHHHcCCCEEEEEEEC
Confidence 7899999999999995
No 231
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=126.70 Aligned_cols=86 Identities=19% Similarity=0.309 Sum_probs=71.2
Q ss_pred ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (507)
Q Consensus 419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a 498 (507)
.....+||+++|++|||||||+++|+++.+...+.++.+..+ ...+...+....+.+|||+|++++..++ ..+++.+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~ 96 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILP--YSFIIGV 96 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCC--GGGTTTC
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHH--HHHHhcC
Confidence 445679999999999999999999999999988888888776 5556666677889999999999998887 6899999
Q ss_pred cEEEEEEeC
Q 010548 499 DVTIFVYDR 507 (507)
Q Consensus 499 d~vilv~D~ 507 (507)
|++++|||+
T Consensus 97 d~~i~v~d~ 105 (201)
T 3oes_A 97 HGYVLVYSV 105 (201)
T ss_dssp CEEEEEEET
T ss_pred CEEEEEEeC
Confidence 999999995
No 232
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.46 E-value=2.1e-13 Score=123.22 Aligned_cols=83 Identities=18% Similarity=0.323 Sum_probs=73.4
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++...++.+|||+|++++..+. ..+++.+|++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~~~ 81 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP--QTYSIDINGY 81 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCC--GGGTTTCSEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHH--HHHHhcCCEE
Confidence 468999999999999999999999999888888888776 5667777677889999999999998777 6889999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 82 i~v~d~ 87 (181)
T 3t5g_A 82 ILVYSV 87 (181)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999995
No 233
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.46 E-value=4.6e-14 Score=127.82 Aligned_cols=85 Identities=24% Similarity=0.406 Sum_probs=52.1
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
++.+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++...++.+|||+|++++..++ ..+++++|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 83 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--TAYYRGAMG 83 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------C--CTTTTTCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhH--HHHHhcCCE
Confidence 457999999999999999999999998887777888877877777777677899999999999998887 689999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 84 ~i~v~d~ 90 (183)
T 2fu5_C 84 IMLVYDI 90 (183)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999996
No 234
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=4.2e-14 Score=129.33 Aligned_cols=86 Identities=21% Similarity=0.334 Sum_probs=78.2
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
.++.+||+++|++|||||||+++|+++.+...+.++.++++....+...+....+.+|||+|++++..++ ..+++.+|
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d 97 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTIT--TAYYRGAM 97 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHH--HHHHTTCC
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHH--HHHHccCC
Confidence 4567999999999999999999999999988888888888888888888788999999999999999887 78999999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 98 ~~i~v~d~ 105 (191)
T 3dz8_A 98 GFILMYDI 105 (191)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999996
No 235
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=3.5e-13 Score=121.43 Aligned_cols=85 Identities=21% Similarity=0.395 Sum_probs=67.0
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCC-CCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
+..+||+++|++|||||||+++|+++.+.. .+.++.+.++....+..++...++.+|||+|++++..++ ..+++.+|
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--~~~~~~~d 85 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVT--HAYYRDAH 85 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------CCGGGCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHccCCC
Confidence 456999999999999999999999999854 566777777777666777677899999999999998877 68899999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 86 ~ii~v~d~ 93 (180)
T 2g6b_A 86 ALLLLYDV 93 (180)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999996
No 236
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.45 E-value=2.8e-13 Score=122.56 Aligned_cols=85 Identities=20% Similarity=0.355 Sum_probs=75.0
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
..+.+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++....+.+|||+|++++..++ ..+++.+|
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d 91 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMR--EQYMRTGD 91 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSH--HHHHHHCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHH--HHHHhcCC
Confidence 34579999999999999999999999999888888888777 6667777677788899999999999887 68999999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 92 ~~i~v~d~ 99 (183)
T 3kkq_A 92 GFLIVYSV 99 (183)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999996
No 237
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.44 E-value=2.1e-13 Score=122.99 Aligned_cols=85 Identities=18% Similarity=0.414 Sum_probs=63.6
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC-CCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
...+||+++|++|||||||+++|++..+...+.++.+.++....+..+ +....+.+|||+|++++..++ ..+++.+|
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d 83 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLG--VAFYRGAD 83 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------CCSTTCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhh--HHHhhcCC
Confidence 356999999999999999999999999988888888888877777776 456789999999999998887 67899999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 84 ~~i~v~d~ 91 (182)
T 1ky3_A 84 CCVLVYDV 91 (182)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999995
No 238
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.44 E-value=3.8e-14 Score=142.21 Aligned_cols=151 Identities=15% Similarity=0.082 Sum_probs=88.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC------CC-CCCC-CC---------------------------CCC------Cee
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATE------SV-PEKV-PP---------------------------VHA------PTR 49 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~------~~-~~~~-~~---------------------------~~~------~~t 49 (507)
....|+|+|.||||||||+|+|++. +. .... +. ..+ +++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 4689999999999999999999862 10 0000 00 000 011
Q ss_pred eC-----CcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEec
Q 010548 50 LP-----PDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCK 124 (507)
Q Consensus 50 ~~-----~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK 124 (507)
.. ..+...++.+.++||+|.... .......+|++++|+|++.+...+.+. ..+ ...|.++|+||
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~----~~i----l~~~~ivVlNK 221 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK----RGI----IEMADLVAVTK 221 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECC
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH----HHH----HhcCCEEEEee
Confidence 00 001135678999999996422 234568999999999998764332221 111 15688999999
Q ss_pred ccCCCCCCccchhhhhHHHHHHhc--------ccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548 125 LDLRGDHNATSLEEVMGPIMQQFR--------EIETCVECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 125 ~Dl~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~SA~~g~gi~~l~~~i~~~i 175 (507)
+|+..... .......+...+. ...+++.+||++|.|+++++++|.+.+
T Consensus 222 ~Dl~~~~~---~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 222 SDGDLIVP---ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CSGGGHHH---HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ecCCCchh---HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 99864211 0111222222111 013689999999999999999998865
No 239
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=126.10 Aligned_cols=86 Identities=15% Similarity=0.208 Sum_probs=69.3
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh-hccchhhcccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-ILSNKEALASC 498 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~a 498 (507)
....+||+++|++|||||||+++|++..+...+.++.+.++..+.+.+++...++.+|||+|++++.. ++ ..+++.+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~--~~~~~~~ 97 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLR--DHCLQTG 97 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHH--HHHHHHC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhH--HHhhccC
Confidence 34579999999999999999999987665545556666666666777787778999999999988765 54 5788999
Q ss_pred cEEEEEEeC
Q 010548 499 DVTIFVYDR 507 (507)
Q Consensus 499 d~vilv~D~ 507 (507)
|++++|||+
T Consensus 98 d~~ilv~d~ 106 (195)
T 3cbq_A 98 DAFLIVFSV 106 (195)
T ss_dssp SEEEEEEET
T ss_pred CEEEEEEEC
Confidence 999999996
No 240
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.44 E-value=3.6e-13 Score=119.55 Aligned_cols=82 Identities=23% Similarity=0.325 Sum_probs=72.2
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+||+++|++|||||||+++|+++.+...+.++.+..+. ..+...+...++.+|||+|++++..++ ..+++++|+++
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~~i 79 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMR--DLYMKNGQGFA 79 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHH--HHHHHHCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHH--HHHhccCCEEE
Confidence 589999999999999999999999998888888876654 556677778899999999999998887 68899999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 80 ~v~d~ 84 (167)
T 1c1y_A 80 LVYSI 84 (167)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99995
No 241
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.43 E-value=1.9e-14 Score=144.97 Aligned_cols=106 Identities=13% Similarity=0.046 Sum_probs=71.4
Q ss_pred CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccch
Q 010548 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL 136 (507)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~ 136 (507)
.++.+.||||||... .....+..+|++++|+|.........+. ....++|+++|+||+|+......
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--------~~~~~~p~ivVlNK~Dl~~~~~~--- 235 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--------KGVLELADIVVVNKADGEHHKEA--- 235 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--------TTSGGGCSEEEEECCCGGGHHHH---
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--------HhHhhcCCEEEEECCCCcChhHH---
Confidence 468899999999543 2334569999999999987765443221 11114699999999998643111
Q ss_pred hhhhHHHHHH---hc-----ccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548 137 EEVMGPIMQQ---FR-----EIETCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 137 ~~~~~~~~~~---~~-----~~~~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
......+... ++ ...++++|||++|.|++++++.|.+.+.
T Consensus 236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 1112222222 11 1137999999999999999999988764
No 242
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.43 E-value=3.5e-13 Score=122.86 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=68.1
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
....+||+++|++|||||||+++|+++.+...+.+|.+..+. ..+...+...++.+|||+|++++..+ ..+++.+|
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~---~~~~~~~~ 93 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC---ERYLNWAH 93 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT---HHHHTTCS
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH---HHHHhhCC
Confidence 345699999999999999999999999998888888886663 44566667789999999999988864 36899999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 94 ~~ilv~d~ 101 (187)
T 3c5c_A 94 AFLVVYSV 101 (187)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999996
No 243
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.42 E-value=4.3e-13 Score=120.73 Aligned_cols=84 Identities=20% Similarity=0.344 Sum_probs=73.0
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||+++|++|||||||+++|+++.+...+.++.+..+. ..+..++....+.+|||+|++++..++ ..+++.+|+
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~--~~~~~~~d~ 83 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMR--EQYMRAGHG 83 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCH--HHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHH--HHHHhhCCE
Confidence 45689999999999999999999999988888888776665 556677667789999999999998877 688999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 84 ~i~v~d~ 90 (181)
T 2fn4_A 84 FLLVFAI 90 (181)
T ss_dssp EEEEEET
T ss_pred EEEEEeC
Confidence 9999995
No 244
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.42 E-value=5.1e-13 Score=124.07 Aligned_cols=84 Identities=15% Similarity=0.337 Sum_probs=71.6
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+..++....+.+|||+|+++|..++ ..+++++|+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~ 83 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLR--PLSYRGADI 83 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC----CGGGTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHH--HhhccCCCE
Confidence 3569999999999999999999999999888888887655 4456677677899999999999999887 679999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 84 ~ilv~d~ 90 (212)
T 2j0v_A 84 FVLAFSL 90 (212)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999995
No 245
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.42 E-value=9e-14 Score=130.18 Aligned_cols=154 Identities=13% Similarity=0.064 Sum_probs=93.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCCCC-----------Cee-eCCc------c----------cCCc
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK----VPPVHA-----------PTR-LPPD------F----------YPDR 58 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~----~~~~~~-----------~~t-~~~~------~----------~~~~ 58 (507)
+..+|+|+|.+|||||||+++|+....... +..... +.+ .... + ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 346899999999999999999986521110 000000 000 0000 0 2235
Q ss_pred eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhh
Q 010548 59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEE 138 (507)
Q Consensus 59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~ 138 (507)
..+.+|||+|+..... .+...++.+++|+|+++.... ... +. ... +.|+++|+||+|+...... .. +
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~-~~---~~~--~~~~iiv~NK~Dl~~~~~~-~~-~ 175 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEK-HP---EIF--RVADLIVINKVALAEAVGA-DV-E 175 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHH-CH---HHH--HTCSEEEEECGGGHHHHTC-CH-H
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhh-hh---hhh--hcCCEEEEecccCCcchhh-HH-H
Confidence 6789999999521111 111357899999998876421 111 11 122 5789999999998643211 12 2
Q ss_pred hhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHHcC
Q 010548 139 VMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~ 177 (507)
........++...+++++||++|.|+++++++|.+.+..
T Consensus 176 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 176 KMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 233333444333478999999999999999999887643
No 246
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.42 E-value=4.1e-13 Score=123.54 Aligned_cols=86 Identities=19% Similarity=0.386 Sum_probs=64.3
Q ss_pred ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (507)
Q Consensus 419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a 498 (507)
.....+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+..++....+.+|||+|++++..++ ..+++++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~ 92 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLR--PLCYTNT 92 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSG--GGGGTTC
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHh--HhhcCCC
Confidence 345679999999999999999999999998877777776555 4456666667788999999999999887 6789999
Q ss_pred cEEEEEEeC
Q 010548 499 DVTIFVYDR 507 (507)
Q Consensus 499 d~vilv~D~ 507 (507)
|++++|||+
T Consensus 93 ~~~i~v~d~ 101 (201)
T 2q3h_A 93 DIFLLCFSV 101 (201)
T ss_dssp SEEEEEEET
T ss_pred cEEEEEEEC
Confidence 999999995
No 247
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.42 E-value=5.8e-13 Score=121.81 Aligned_cols=84 Identities=21% Similarity=0.381 Sum_probs=73.2
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+..++...++.+|||+|++++..++ ..+++.+|+
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~d~ 92 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLR--PLSYPMTDV 92 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTG--GGGCTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHH--HHhcCCCCE
Confidence 3569999999999999999999999998888888877665 4556777677899999999999999887 689999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 93 ~i~v~d~ 99 (194)
T 2atx_A 93 FLICFSV 99 (194)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999995
No 248
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.42 E-value=5e-13 Score=118.41 Aligned_cols=82 Identities=23% Similarity=0.351 Sum_probs=71.5
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+||+++|++|||||||+++|+++.+...+.++.+..+ ...+...+....+.+|||+|++++..++ ..+++.+|+++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~~~~i 79 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMR--DLYIKNGQGFI 79 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHH--HHHHHHCSEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHH--HHHhccCCEEE
Confidence 48999999999999999999999999888878777555 5566677677789999999999998887 67899999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 80 ~v~d~ 84 (167)
T 1kao_A 80 LVYSL 84 (167)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 99995
No 249
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.42 E-value=3.4e-13 Score=120.17 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=58.1
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+||+++|++|||||||+++|++..+...+.++.+.+.....+..++....+.+|||+|++++..... ..+++.+|+++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-~~~~~~~d~~i 80 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQ-DHCLQTGDAFL 80 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC---------CHHHHHCSEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhh-hhhhccCCEEE
Confidence 58999999999999999999999888877777777777777788887788999999999998876332 56789999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 81 ~v~d~ 85 (169)
T 3q85_A 81 IVFSV 85 (169)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99996
No 250
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.42 E-value=2.4e-13 Score=126.79 Aligned_cols=87 Identities=13% Similarity=0.246 Sum_probs=74.7
Q ss_pred ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCC----------eEEEEEEecCCchhhhhh
Q 010548 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG----------NKKTLILQEIPEEGVKKI 488 (507)
Q Consensus 419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~----------~~~~~i~Dt~G~~~~~~~ 488 (507)
..++.+||+++|++|||||||+++|++..+...+.++.+.++..+.+.+.+. ..++.+|||+|++++..+
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 3456799999999999999999999999987777778877777766766655 678999999999999988
Q ss_pred ccchhhcccccEEEEEEeC
Q 010548 489 LSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 489 ~~~~~~~~~ad~vilv~D~ 507 (507)
+ ..+++.+|++++|||+
T Consensus 101 ~--~~~~~~~d~iilV~D~ 117 (217)
T 2f7s_A 101 T--TAFFRDAMGFLLMFDL 117 (217)
T ss_dssp H--HHHHTTCCEEEEEEET
T ss_pred H--HHHhcCCCEEEEEEEC
Confidence 7 6899999999999996
No 251
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.41 E-value=9.1e-13 Score=119.24 Aligned_cols=83 Identities=20% Similarity=0.380 Sum_probs=71.4
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+||+++|++|||||||+++|+++.+...+.++.+..+ ...+...+....+.+|||+|++++..++ ..+++.+|++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~ 80 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLR--PLSYPQTDVS 80 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTG--GGGCTTCSEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHH--HHhccCCcEE
Confidence 458999999999999999999999998888777777655 3445666677889999999999998887 6789999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 81 i~v~d~ 86 (186)
T 1mh1_A 81 LICFSL 86 (186)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999995
No 252
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.41 E-value=7.8e-13 Score=121.95 Aligned_cols=84 Identities=20% Similarity=0.329 Sum_probs=73.2
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||+++|++|||||||+++|+++.+...+.++.+..+.. .+..++....+.+|||+|++++..++ ..+++++|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~ 99 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLR--PLSYPDTDV 99 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTG--GGGCTTCSE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHH--HHhcCCCCE
Confidence 356899999999999999999999999988888888877654 45667667789999999999999887 678999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 100 ~i~v~d~ 106 (201)
T 2gco_A 100 ILMCFSI 106 (201)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999995
No 253
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.41 E-value=5.9e-13 Score=121.06 Aligned_cols=80 Identities=21% Similarity=0.327 Sum_probs=67.8
Q ss_pred ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (507)
Q Consensus 419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a 498 (507)
.....+||+++|++|||||||+++|+++.+...+.++.+ .+ .+.+.+++....+.+|||+|++++. +++++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~ 86 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-------FAAWV 86 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-------HHHHC
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-------eecCC
Confidence 345679999999999999999999999999887877743 34 4677788777899999999998766 67889
Q ss_pred cEEEEEEeC
Q 010548 499 DVTIFVYDR 507 (507)
Q Consensus 499 d~vilv~D~ 507 (507)
|++++|||+
T Consensus 87 ~~~i~v~d~ 95 (184)
T 3ihw_A 87 DAVVFVFSL 95 (184)
T ss_dssp SEEEEEEET
T ss_pred CEEEEEEEC
Confidence 999999996
No 254
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.41 E-value=5.4e-13 Score=120.11 Aligned_cols=77 Identities=26% Similarity=0.356 Sum_probs=65.5
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||+++|+++++.. +.+|.+..+ .+.+..++...++.+|||+|+++ ..+++++|++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~d~~ 76 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-------AKFSGWADAV 76 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-------HHHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-------hHHHHhCCEE
Confidence 46999999999999999999999999886 667777555 56677776778899999999976 3577899999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 77 ilv~D~ 82 (178)
T 2iwr_A 77 IFVFSL 82 (178)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999996
No 255
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.40 E-value=3.6e-13 Score=145.51 Aligned_cols=115 Identities=19% Similarity=0.205 Sum_probs=85.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCC----C---CCCCC--------Cee---eCCcccCCceEEEEEeCCCCccch
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEK----V---PPVHA--------PTR---LPPDFYPDRVPVTIIDTSSSLENK 73 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~----~---~~~~~--------~~t---~~~~~~~~~~~~~i~Dt~G~~~~~ 73 (507)
..+|+|+|+.++|||||..+|+...-... . .+..+ ++| ....+.++++.++|+||||+.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 35799999999999999999973221111 0 00000 222 223455788999999999999999
Q ss_pred hhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548 74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (507)
Q Consensus 74 ~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 130 (507)
......++-+|++|+|+|+..+-..+... .+..+.+. ++|.|+++||+|....
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~--v~~~a~~~--~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRI--LFHALRKM--GIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHH--HHHHHHHH--TCSCEECCEECCSSSC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHH--HHHHHHHc--CCCeEEEEeccccccC
Confidence 99999999999999999999885554433 55566666 7999999999998654
No 256
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.40 E-value=8.1e-13 Score=117.19 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=68.5
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||+++|+++.+...+.++.+..+. ..+...++..++.+|||+|++++..++ ..+++.+|++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~~ 79 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIR--DNYFRSGEGF 79 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHH--HHHHHHCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHH--HHHhhcCCEE
Confidence 3589999999999999999999999988888777776653 345666667789999999999998887 6889999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 80 i~v~d~ 85 (168)
T 1u8z_A 80 LCVFSI 85 (168)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999995
No 257
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.40 E-value=2.3e-13 Score=138.94 Aligned_cols=158 Identities=17% Similarity=0.143 Sum_probs=76.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCC----CCCee---eCCccc--CCceEEEEEeCCCCccch-------h
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPV----HAPTR---LPPDFY--PDRVPVTIIDTSSSLENK-------G 74 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~----~~~~t---~~~~~~--~~~~~~~i~Dt~G~~~~~-------~ 74 (507)
.++|+|+|++|||||||+|+|++..+... .... .+... +...+. .....+.+|||+|..... .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 57899999999999999999998775311 1100 01111 111111 223578999999986531 1
Q ss_pred h------------------hHHhhccCC--EEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCcc
Q 010548 75 K------------------LNEELKRAD--AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT 134 (507)
Q Consensus 75 ~------------------~~~~~~~ad--~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~ 134 (507)
. ...++.+++ ++|++.+.+. .++......|+..+.. ++|+|+|+||+|+...+.+.
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~~---~v~iIlVinK~Dll~~~ev~ 186 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQ 186 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHTT---TSEEEEEEESTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHhc---cCcEEEEEEcccCccHHHHH
Confidence 1 012234444 4555544431 2344443347777653 79999999999997644331
Q ss_pred chhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548 135 SLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i 175 (507)
.....+...+...+. +++++||+++.++.+++..+...+
T Consensus 187 ~~k~~i~~~~~~~~i--~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 187 QFKKQIMKEIQEHKI--KIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHTC--CCCCCC-----------------C
T ss_pred HHHHHHHHHHHHcCC--eEEeCCCCCCcCHHHHHHHHHhhC
Confidence 112344455555543 689999999999999888776654
No 258
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.40 E-value=1e-12 Score=120.98 Aligned_cols=84 Identities=25% Similarity=0.401 Sum_probs=73.0
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||++++++..+...+.++.+.++....+.++|....+.+|||+|++++..+. ..+++.++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~--~~~~~~~~~~ 81 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT--SAYYRGAVGA 81 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCC--HHHHTTCSEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhh--HHHHhcCCEE
Confidence 46899999999999999999999999998888998888888888888777889999999999988776 6788999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 82 i~v~d~ 87 (199)
T 2f9l_A 82 LLVYDI 87 (199)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999995
No 259
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=6.6e-12 Score=125.32 Aligned_cols=83 Identities=18% Similarity=0.286 Sum_probs=54.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCC-CCeeeCCcccCC---------------ceEEEEEeCCCCccchh
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVH-APTRLPPDFYPD---------------RVPVTIIDTSSSLENKG 74 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~-~~~t~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 74 (507)
.++|+|+|.||||||||+|+|++..+.. +++... ....-...+... ...+.+|||||+.++..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 3799999999999999999999876322 232211 111000111110 25799999999876531
Q ss_pred -------hhHHhhccCCEEEEEEeCCC
Q 010548 75 -------KLNEELKRADAVVLTYACNQ 94 (507)
Q Consensus 75 -------~~~~~~~~ad~il~V~D~~~ 94 (507)
....+++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 22356899999999999986
No 260
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.39 E-value=8.7e-13 Score=121.64 Aligned_cols=86 Identities=24% Similarity=0.363 Sum_probs=73.2
Q ss_pred ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (507)
Q Consensus 419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a 498 (507)
.....+||+++|++|||||||+++|+++.+...+.++.+..+. ..+..++....+.+|||+|++++..++ ..+++.+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~ 86 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIR--DNYFRSG 86 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHH--HHHHHHC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHHH--HHHHhhC
Confidence 3446799999999999999999999999988888888776653 455666667789999999999998887 6889999
Q ss_pred cEEEEEEeC
Q 010548 499 DVTIFVYDR 507 (507)
Q Consensus 499 d~vilv~D~ 507 (507)
|++++|||+
T Consensus 87 ~~~i~v~d~ 95 (206)
T 2bov_A 87 EGFLCVFSI 95 (206)
T ss_dssp SEEEEEEET
T ss_pred CEEEEEEEC
Confidence 999999996
No 261
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.39 E-value=1.2e-12 Score=121.05 Aligned_cols=84 Identities=20% Similarity=0.339 Sum_probs=70.0
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
.+.+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++....+.+|||+|++++..++ ..+++++|+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~ 104 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLR--PLSYPQTDV 104 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTG--GGGCTTCSE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHH--HHHhccCCE
Confidence 4569999999999999999999999999877777776444 4556777778888999999999999887 679999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 105 ~i~v~d~ 111 (204)
T 4gzl_A 105 FLICFSL 111 (204)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999996
No 262
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.39 E-value=6.7e-13 Score=120.98 Aligned_cols=82 Identities=17% Similarity=0.289 Sum_probs=69.7
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
.+..+||+++|++|||||||+++|+++++...+.+|.+..+. .+. .+..++.+|||+|++++..++ ..+++.+|
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d 92 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KIT--KGNVTIKLWDIGGQPRFRSMW--ERYCRGVS 92 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEE--ETTEEEEEEEECCSHHHHTTH--HHHHTTCS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEE--eCCEEEEEEECCCCHhHHHHH--HHHHccCC
Confidence 345799999999999999999999999998777788776553 232 357789999999999999887 67899999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 93 ~ii~v~D~ 100 (188)
T 1zd9_A 93 AIVYMVDA 100 (188)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999996
No 263
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.39 E-value=1e-12 Score=120.45 Aligned_cols=83 Identities=18% Similarity=0.305 Sum_probs=66.1
Q ss_pred ccCceEEEEEecCCCCchHHHHHHHhcCCCCC-CCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccc
Q 010548 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (507)
Q Consensus 419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 497 (507)
......||+++|++|||||||+++|++..+.. .+.+|.+.. ...+. +....+.+|||+|++++..++ ..++++
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~--~~~~~--~~~~~~~i~Dt~G~~~~~~~~--~~~~~~ 86 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN--VETFE--KGRVAFTVFDMGGAKKFRGLW--ETYYDN 86 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE--EEEEE--ETTEEEEEEEECCSGGGGGGG--GGGCTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee--EEEEE--eCCEEEEEEECCCCHhHHHHH--HHHHhc
Confidence 34567899999999999999999999999988 677777733 33333 467889999999999999888 689999
Q ss_pred ccEEEEEEeC
Q 010548 498 CDVTIFVYDR 507 (507)
Q Consensus 498 ad~vilv~D~ 507 (507)
+|++++|||+
T Consensus 87 ~d~ii~v~D~ 96 (199)
T 4bas_A 87 IDAVIFVVDS 96 (199)
T ss_dssp CSEEEEEEET
T ss_pred CCEEEEEEEC
Confidence 9999999996
No 264
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.39 E-value=8.6e-13 Score=142.94 Aligned_cols=159 Identities=15% Similarity=0.095 Sum_probs=100.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCC----------eee--------------------------
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAP----------TRL-------------------------- 50 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~---~~~~~~~----------~t~-------------------------- 50 (507)
....+|+|+|.+++|||||+|+|++..+.+. ..+..+. ...
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3457999999999999999999999876322 1111000 000
Q ss_pred ---CCcc----------cCCceEEEEEeCCCCccc-------------hhhhHHhh-ccCCEEEEEEeCCChhhHHHHHH
Q 010548 51 ---PPDF----------YPDRVPVTIIDTSSSLEN-------------KGKLNEEL-KRADAVVLTYACNQQSTLSRLSS 103 (507)
Q Consensus 51 ---~~~~----------~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~-~~ad~il~V~D~~~~~s~~~~~~ 103 (507)
...+ .+....+.++||||.... ..+...++ ..+|++++|+|++...+..+...
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0000 012335789999997541 12333444 58899999999987644444322
Q ss_pred hHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhH--HHHHHhcccCcEEEeCcccCCCchHHHHHHHHH
Q 010548 104 YWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG--PIMQQFREIETCVECSATTMIQVPDVFYYAQKA 174 (507)
Q Consensus 104 ~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~ 174 (507)
++..+... ++|+|+|+||+|+...... . ..... .+....+ ..+++.+||++|.|+++|++.+.+.
T Consensus 209 -ll~~L~~~--g~pvIlVlNKiDlv~~~~~-~-~~il~~~~~~l~lg-~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 -IAKEVDPQ--GQRTIGVITKLDLMDEGTD-A-RDVLENKLLPLRRG-YIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp -HHHHHCTT--CSSEEEEEECTTSSCTTCC-S-HHHHTTCSSCCSSC-EEECCCCCCEESSSSEEHHHHHHHH
T ss_pred -HHHHHHhc--CCCEEEEEeCcccCCcchh-h-HHHHHHHhhhhhcc-CCceEEecccccccchhHHHHHHHH
Confidence 56666554 7999999999999865332 1 11100 0000112 1257889999999999999999873
No 265
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.39 E-value=6.6e-13 Score=123.80 Aligned_cols=83 Identities=22% Similarity=0.382 Sum_probs=52.8
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+||+++|++|||||||+++|+++.+...+.++.+..+ ...+...+...++.+|||+|++++..++ ..+++++|++
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d~~ 109 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLR--PLFYPDASVL 109 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC-----------------CEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHH--HHHhccCCEE
Confidence 469999999999999999999999998888888777655 4456667677789999999999998887 6789999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 110 i~v~d~ 115 (214)
T 2j1l_A 110 LLCFDV 115 (214)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999996
No 266
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=117.54 Aligned_cols=83 Identities=17% Similarity=0.270 Sum_probs=60.3
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchh--hhhhccchhhccccc
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG--VKKILSNKEALASCD 499 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~~~~~~~~~ad 499 (507)
+.+||+++|++|||||||+++|++..+...+.++ ++++..+.+..++...++.+|||+|+++ +..+. ..+++.+|
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~--~~~~~~~~ 79 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQL-GEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQ--ESCLQGGS 79 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCS-SSSEEEEEEEETTEEEEEEEECCC-------CHHH--HHTTTSCS
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCcc-ccceeEEEEEECCEEEEEEEEecCCCCccchhhhH--HhhcccCC
Confidence 4689999999999999999999999987766554 4455566677776777899999999987 44444 57889999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 80 ~~i~v~d~ 87 (175)
T 2nzj_A 80 AYVIVYSI 87 (175)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999996
No 267
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=1e-12 Score=121.77 Aligned_cols=83 Identities=20% Similarity=0.356 Sum_probs=66.2
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+||+++|++|||||||+++|+++.+...+.++.+..+... +...+....+.+|||+|++++..++ ..+++.+|++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~ 100 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQEDYDRLR--PLSYPDTDVI 100 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEETTEEEEEEEEECTTCTTCTTTG--GGGCTTCCEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEECCEEEEEEEEECCCcHHHHHHH--HhhcCCCCEE
Confidence 458999999999999999999999999888888877666443 5666667789999999999998877 6789999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 101 i~v~d~ 106 (207)
T 2fv8_A 101 LMCFSV 106 (207)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999995
No 268
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.38 E-value=6.6e-13 Score=132.82 Aligned_cols=119 Identities=12% Similarity=0.072 Sum_probs=88.2
Q ss_pred CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC----------ChhhHHHHHHhHHHHHHhc--CCCCcEEEEEec
Q 010548 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN----------QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124 (507)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~----------~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK 124 (507)
+.+.+.+|||+|++.++..+..++++++++|+|||++ +..+++.... |+..+... .++.|+|||+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~-~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHH-HHHHHHhccccCCCeEEEEEEC
Confidence 5689999999999999999999999999999999998 7888998876 77766543 357999999999
Q ss_pred ccCCCCCCc-cc------------------hhhhhHHH-HHHh-------------cccCcEEEeCcccCCCchHHHHHH
Q 010548 125 LDLRGDHNA-TS------------------LEEVMGPI-MQQF-------------REIETCVECSATTMIQVPDVFYYA 171 (507)
Q Consensus 125 ~Dl~~~~~~-~~------------------~~~~~~~~-~~~~-------------~~~~~~~~~SA~~g~gi~~l~~~i 171 (507)
+|+..++.. .. ..+....+ ..++ +....+++|||+++.||.++|+.+
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 998543110 00 01233333 3332 111246899999999999999999
Q ss_pred HHHHc
Q 010548 172 QKAVL 176 (507)
Q Consensus 172 ~~~i~ 176 (507)
.+.+.
T Consensus 340 ~~~I~ 344 (354)
T 2xtz_A 340 DETLR 344 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88763
No 269
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.38 E-value=1.1e-12 Score=119.06 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=68.5
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++....+.+|||+|++++..++ ..+++.+|++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~ 79 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR--DQYMRTGEGF 79 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE-EEEEEETTEEEEEEEEECCCC---CTTH--HHHHHHCSEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE-EEEEEECCcEEEEEEEECCCcHHHHHHH--HHHHhcCCEE
Confidence 468999999999999999999999998888877776544 4456667677788999999999999887 6889999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 80 i~v~d~ 85 (189)
T 4dsu_A 80 LCVFAI 85 (189)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999995
No 270
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.38 E-value=1.3e-12 Score=119.54 Aligned_cols=85 Identities=25% Similarity=0.366 Sum_probs=76.5
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||+++|++|||||||++++++..+...+.+|.+.++....+.++|....+.+|||+|++++..++ ..+++.+++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~--~~~~~~~~~ 104 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT--SAYYRGAVG 104 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCC--HHHHTTCCE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhh--HHHhhcCCE
Confidence 457999999999999999999999999998999999988888888888777788899999999988777 678899999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 105 ~i~v~d~ 111 (191)
T 1oix_A 105 ALLVYDI 111 (191)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999995
No 271
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.38 E-value=3.3e-13 Score=124.57 Aligned_cols=85 Identities=24% Similarity=0.352 Sum_probs=46.6
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcC--CCCCCCCCCccceeEEEEEEcCCC--eEEEEEEecCCchhhhhhccchhhcc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQPGG--NKKTLILQEIPEEGVKKILSNKEALA 496 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~ 496 (507)
...+||+++|++|||||||+++|++. .+...+.+|.+.++....+..++. ...+.+|||+|++++..++ ..+++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~ 95 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQI--SQYWN 95 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHH--STTCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHH--HHHHh
Confidence 35689999999999999999999999 777777778777777777888866 7899999999999999887 68999
Q ss_pred cccEEEEEEeC
Q 010548 497 SCDVTIFVYDR 507 (507)
Q Consensus 497 ~ad~vilv~D~ 507 (507)
.+|++++|||+
T Consensus 96 ~~d~~i~v~d~ 106 (208)
T 2yc2_C 96 GVYYAILVFDV 106 (208)
T ss_dssp CCCEEEEEEET
T ss_pred hCcEEEEEEEC
Confidence 99999999996
No 272
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.38 E-value=3.4e-12 Score=122.72 Aligned_cols=115 Identities=19% Similarity=0.046 Sum_probs=70.6
Q ss_pred ceEEEEEeCCCCccchhhhH------HhhccCCEEEEEEeCCChhhHHHHHHhH---HHHHHhcCCCCcEEEEEecccCC
Q 010548 58 RVPVTIIDTSSSLENKGKLN------EELKRADAVVLTYACNQQSTLSRLSSYW---LPELRRLEIKVPIIVAGCKLDLR 128 (507)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~------~~~~~ad~il~V~D~~~~~s~~~~~~~~---~~~l~~~~~~~piilv~NK~Dl~ 128 (507)
.+.+.+|||||..+...... .++.. +++++|+|+....+.......+ ....... ++|+++|+||+|+.
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLL 184 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc--CCCeEEEEeccccc
Confidence 35899999999865433221 24566 8999999986544433322211 1112222 68999999999987
Q ss_pred CCCCccchhh---hhH----H-----------------HHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548 129 GDHNATSLEE---VMG----P-----------------IMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 129 ~~~~~~~~~~---~~~----~-----------------~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i 175 (507)
.........+ ... . +...++...+++++||++|.|+++++++|.+.+
T Consensus 185 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 185 SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp CHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 5321100011 000 1 123333323689999999999999999998765
No 273
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=1.5e-12 Score=116.03 Aligned_cols=82 Identities=23% Similarity=0.392 Sum_probs=69.5
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+||+++|++|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|++++..++ ..+++.+|+++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~--~~~~~~~~~~i 79 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQ--RLSISKGHAFI 79 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHH--HHHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHH--HHhcccCCEEE
Confidence 589999999999999999999999988777777765543 345556567789999999999988877 67899999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 80 ~v~d~ 84 (172)
T 2erx_A 80 LVYSI 84 (172)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99995
No 274
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.38 E-value=3.4e-13 Score=126.26 Aligned_cols=86 Identities=19% Similarity=0.291 Sum_probs=75.5
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
....+||+++|++|||||||+++|+.+.+...+.++.+++.....+...++...+.+|||+|++++..++ ..+++++|
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~ 89 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR--DGYYIQAQ 89 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCC--HHHHTTCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHH--HHHHhcCC
Confidence 3456999999999999999999998888777777888877777777777778899999999999998877 78999999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 90 ~~i~v~d~ 97 (221)
T 3gj0_A 90 CAIIMFDV 97 (221)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999996
No 275
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.38 E-value=1.4e-12 Score=118.08 Aligned_cols=84 Identities=25% Similarity=0.369 Sum_probs=71.7
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||+++|++|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|++++..++ ..+++.+|+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 92 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIR--DNYFRSGEG 92 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHH--HHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHHH--HHHhccCCE
Confidence 45699999999999999999999999988888777776653 445666567789999999999998887 688999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 93 ~i~v~d~ 99 (187)
T 2a9k_A 93 FLCVFSI 99 (187)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999995
No 276
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.37 E-value=8.6e-14 Score=128.14 Aligned_cols=86 Identities=27% Similarity=0.439 Sum_probs=74.4
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
..+.+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++++..++ ..+++++|
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d 107 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT--SSYYRGAH 107 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS--CC--CCCS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHH--HHHhhcCC
Confidence 3467999999999999999999999999988888888888888888888777899999999999998877 67999999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 108 ~~i~v~d~ 115 (199)
T 3l0i_B 108 GIIVVYDV 115 (199)
T ss_dssp EEEECC-C
T ss_pred EEEEEEEC
Confidence 99999995
No 277
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.37 E-value=9e-13 Score=131.86 Aligned_cols=118 Identities=15% Similarity=0.119 Sum_probs=90.5
Q ss_pred CCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCC----------hhhHHHHHHhHHHHHHhc--CCCCcEEEEEe
Q 010548 56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ----------QSTLSRLSSYWLPELRRL--EIKVPIIVAGC 123 (507)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~----------~~s~~~~~~~~~~~l~~~--~~~~piilv~N 123 (507)
.+++.+.+|||+|++.++..+..++++++++|||||+++ ..++.+... |+..+... ..+.|+|||+|
T Consensus 190 ~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~-~~~~i~~~~~~~~~piiLv~N 268 (353)
T 1cip_A 190 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK-LFDSICNNKWFTDTSIILFLN 268 (353)
T ss_dssp ETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEE
T ss_pred eCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH-HHHHHHcCccccCCcEEEEEE
Confidence 357899999999999999999999999999999999999 466888776 77666553 35799999999
Q ss_pred cccCCCCC---------------CccchhhhhHHHHH-Hh--------cccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548 124 KLDLRGDH---------------NATSLEEVMGPIMQ-QF--------REIETCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 124 K~Dl~~~~---------------~~~~~~~~~~~~~~-~~--------~~~~~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
|+|+.... .+ .. +.+..++. .+ .....+++|||+++.||.++|+++.+.+.
T Consensus 269 K~DL~~~ki~~~~l~~~fp~~~g~~-~~-~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 269 KKDLFEEKIKKSPLTICYPEYAGSN-TY-EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp CHHHHHHHHTTSCGGGTCTTCCSCS-CH-HHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred CcCchhhhccccchhhcccccCCCC-CH-HHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 99985321 12 22 23333333 11 11236899999999999999999988764
No 278
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=1.8e-12 Score=120.64 Aligned_cols=85 Identities=21% Similarity=0.301 Sum_probs=65.5
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCC--CCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchh-hhhhccchhhcc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-VKKILSNKEALA 496 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~ 496 (507)
....+||++||++|||||||+++|++... ...+ ++.+.++..+.+.+++...++.+|||+|++. +..+. ..+++
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~--~~~~~ 110 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLH--DHCMQ 110 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHH--HCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHH--HHHHh
Confidence 34569999999999999999999997654 3333 3455566667777887777889999999887 44454 57889
Q ss_pred cccEEEEEEeC
Q 010548 497 SCDVTIFVYDR 507 (507)
Q Consensus 497 ~ad~vilv~D~ 507 (507)
.+|++++|||+
T Consensus 111 ~a~~~ilVydv 121 (211)
T 2g3y_A 111 VGDAYLIVYSI 121 (211)
T ss_dssp CCSEEEEEEET
T ss_pred hCCEEEEEEEC
Confidence 99999999996
No 279
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.37 E-value=4.9e-13 Score=121.47 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=58.8
Q ss_pred eEEEEEecCCCCchHHHHHHHhcC--CCCCCCCCCccceeEEEEEEc---CCCeEEEEEEecCCchhhhhhccchhhccc
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQ---PGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~--~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 497 (507)
.+||+++|++|||||||+++|++. .+...+.+|.+.++....+.. .+....+.+|||+|+++|..+. ..++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~ 79 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH--PHFMTQ 79 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS--HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh--HHHccC
Confidence 379999999999999999999985 455556677777665544433 2346688999999999999877 688999
Q ss_pred ccEEEEEEeC
Q 010548 498 CDVTIFVYDR 507 (507)
Q Consensus 498 ad~vilv~D~ 507 (507)
++++++|||+
T Consensus 80 ~~~~i~v~d~ 89 (184)
T 2zej_A 80 RALYLAVYDL 89 (184)
T ss_dssp SEEEEEEEEG
T ss_pred CcEEEEEEeC
Confidence 9999999995
No 280
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.37 E-value=8.6e-13 Score=117.16 Aligned_cols=81 Identities=22% Similarity=0.333 Sum_probs=48.6
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+||+++|++|||||||+++|++..+...+. +.++.+ ...+...+....+.+|||+|++++..+. ..+++.+|+++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~~~i 77 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAE-AAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLP--GHCMAMGDAYV 77 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC-----------------CCEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCC-ccccce-EEEEEECCEEEEEEEEECCCCccchhhh--hhhhhhCCEEE
Confidence 4899999999999999999999888765543 344444 3456677788899999999999998887 67899999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 78 ~v~d~ 82 (166)
T 3q72_A 78 IVYSV 82 (166)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99995
No 281
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.36 E-value=3.9e-13 Score=121.37 Aligned_cols=83 Identities=20% Similarity=0.386 Sum_probs=56.7
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||+++|+++.+...+.+|.+..+.. .+...+....+.+|||+|++++..++ ..+++++|++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~ 83 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQEDYNRLR--PLSYRGADVF 83 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC-CCC-------CEEECCCC-CTTTTTG--GGGGTTCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE-EEEECCEEEEEEEEECCCChhhhhhH--HhhccCCCEE
Confidence 45899999999999999999999999887777776654432 23344456678899999999999887 6889999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 84 i~v~d~ 89 (182)
T 3bwd_D 84 ILAFSL 89 (182)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999995
No 282
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.36 E-value=2.3e-13 Score=136.27 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=67.7
Q ss_pred CCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccc
Q 010548 56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS 135 (507)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~ 135 (507)
..++.+.+|||||...... ...+.+|++++|+|++.+.....+. ... . ++|.++|+||+|+......
T Consensus 146 ~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~----~~~--~--~~p~ivv~NK~Dl~~~~~~-- 212 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIK----KGL--M--EVADLIVINKDDGDNHTNV-- 212 (341)
T ss_dssp HTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCC----HHH--H--HHCSEEEECCCCTTCHHHH--
T ss_pred ccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHH----Hhh--h--cccCEEEEECCCCCChHHH--
Confidence 3467899999999765433 3568999999999987654321111 011 1 4688999999998653111
Q ss_pred hhhhhHHHHH---Hhcc-----cCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548 136 LEEVMGPIMQ---QFRE-----IETCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 136 ~~~~~~~~~~---~~~~-----~~~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
......+.. .++. ..+++++||++|.|++++++.|.+.+.
T Consensus 213 -~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 213 -AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp -HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111122222 2221 236899999999999999999988653
No 283
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.36 E-value=1.7e-12 Score=118.99 Aligned_cols=83 Identities=24% Similarity=0.301 Sum_probs=70.4
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||+++|++|||||||+++|+++++...+.++.+..+ ...+...+...++.+|||+|+++ ...+ ..+++.+|+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~--~~~~~~~d~ 101 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQR--EGHMRWGEG 101 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHH--HHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccch--hhhhccCCE
Confidence 3468999999999999999999999999888888888766 34456666778899999999987 5555 678999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 102 iilv~D~ 108 (196)
T 2atv_A 102 FVLVYDI 108 (196)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999996
No 284
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.35 E-value=1.2e-12 Score=122.08 Aligned_cols=85 Identities=19% Similarity=0.250 Sum_probs=71.4
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCC-eEEEEEEecCCchhhhhhccchhhccccc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG-NKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
...+||+++|++|||||||+|+|+++.+...+.++.+..+........++ ...+.+|||+|++++..++ ..+++.+|
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d 86 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK--DVYYIGAS 86 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC--HHHHTTCS
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHH--HHHhhcCC
Confidence 35699999999999999999999999988777788876665555555433 3789999999999998777 68899999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 87 ~~i~v~d~ 94 (218)
T 4djt_A 87 GAILFFDV 94 (218)
T ss_dssp EEEEEEET
T ss_pred EEEEEEeC
Confidence 99999996
No 285
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.35 E-value=6.9e-13 Score=145.21 Aligned_cols=235 Identities=13% Similarity=0.126 Sum_probs=135.5
Q ss_pred CCCCCC-CCceEEEEEcCCCCCHHHHHHHHhcCC--------CCC-C-CC-----CCCCCeeeCC-----cc-----cCC
Q 010548 4 GSGSSS-RTGVRVVVVGDRGTGKSSLIAAAATES--------VPE-K-VP-----PVHAPTRLPP-----DF-----YPD 57 (507)
Q Consensus 4 m~~~~~-~~~~kV~ivG~~~vGKSSLin~l~~~~--------~~~-~-~~-----~~~~~~t~~~-----~~-----~~~ 57 (507)
|+...+ .+..+|+|+|+.++|||||..+|+... ... . +. -...++|+.. .+ ..+
T Consensus 4 m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~ 83 (709)
T 4fn5_A 4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD 83 (709)
T ss_dssp --CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC
T ss_pred CCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence 444433 345579999999999999999997321 000 0 00 0111222111 11 123
Q ss_pred ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchh
Q 010548 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE 137 (507)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~ 137 (507)
++.++|+||||+.+|......+++-+|++|+|+|+..+-..+... .++...+. ++|.++++||+|.... ...
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~--v~~~a~~~--~lp~i~~iNKiDr~~a----~~~ 155 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSET--VWRQANKY--GVPRIVYVNKMDRQGA----NFL 155 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHHH--TCCEEEEEECSSSTTC----CHH
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHH--HHHHHHHc--CCCeEEEEccccccCc----cHH
Confidence 689999999999999999999999999999999999886655544 55555555 7999999999998764 334
Q ss_pred hhhHHHHHHhcccCc--EEEeCcccC-CCchHHHHHHHHHH-cC-CCC--CC-----CccchhcccHHHHHHHHHHHhhc
Q 010548 138 EVMGPIMQQFREIET--CVECSATTM-IQVPDVFYYAQKAV-LH-PTA--PL-----FDHDEQTLKPRCVRALKRIFIIC 205 (507)
Q Consensus 138 ~~~~~~~~~~~~~~~--~~~~SA~~g-~gi~~l~~~i~~~i-~~-~~~--~~-----~~~~~~~~~~~~~~~l~~~~~~~ 205 (507)
....++...++.... -+++.+..+ .|+-++. .... .. ... .. ............+..+.......
T Consensus 156 ~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 232 (709)
T 4fn5_A 156 RVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLI---KMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEA 232 (709)
T ss_dssp HHHHHHHHHHCSCEEESEEEESSSTTCCEEEETT---TTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhhhcccceeeeecccCchhccceEEEEe---eeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhc
Confidence 555666666654211 122222111 1111110 0000 00 000 00 00000111112222222222222
Q ss_pred cCC------CCCccChhhhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCC
Q 010548 206 DHD------MDGALNDAELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDG 249 (507)
Q Consensus 206 d~~------~d~~l~~~el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~ 249 (507)
|.. +++.++.+++....+. ++++++...++..+++.+.+++|+-
T Consensus 233 d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP 292 (709)
T 4fn5_A 233 NEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAP 292 (709)
T ss_dssp SHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCT
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCC
Confidence 221 3456788888777765 6889999999999999999999974
No 286
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=2.1e-12 Score=118.30 Aligned_cols=83 Identities=22% Similarity=0.400 Sum_probs=70.8
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
..+||+++|++|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|++++..++ ..+++.+|++
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~~ 83 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQ--RLSISKGHAF 83 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHH--HHHHHHCSEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHH--HHhhccCCEE
Confidence 4589999999999999999999999988777777775553 345566667789999999999998877 6789999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 84 i~v~d~ 89 (199)
T 2gf0_A 84 ILVFSV 89 (199)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999995
No 287
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.34 E-value=3.1e-12 Score=116.41 Aligned_cols=84 Identities=20% Similarity=0.310 Sum_probs=62.0
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||+++|.+|||||||+++|+++.+...+.++.+..+ ...+...+....+.+|||+|++++..++ ..+++.+|+
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 95 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR--DQYMRTGEG 95 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-------------CTTCSE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHH--HHhhCcCCE
Confidence 3569999999999999999999999988877777766555 3456666667789999999999988877 678999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 96 ~i~v~d~ 102 (190)
T 3con_A 96 FLCVFAI 102 (190)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999995
No 288
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.34 E-value=3e-12 Score=116.65 Aligned_cols=81 Identities=19% Similarity=0.326 Sum_probs=66.4
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCC-CCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERP-FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
.+.+||+++|++|||||||+++|++.. +...+.+|.+ +....+..+ ..++.+|||+|++++..++ ..+++++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~--~~~~~~~d 92 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSS--SLSFTVFDMSGQGRYRNLW--EHYYKEGQ 92 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECS--SCEEEEEEECCSTTTGGGG--GGGGGGCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEEC--CEEEEEEECCCCHHHHHHH--HHHHhcCC
Confidence 456999999999999999999999988 5555666665 445556665 4688999999999999887 68999999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 93 ~ii~v~d~ 100 (190)
T 2h57_A 93 AIIFVIDS 100 (190)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999996
No 289
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.34 E-value=5.9e-12 Score=112.18 Aligned_cols=80 Identities=23% Similarity=0.270 Sum_probs=65.3
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
++.+||+++|++|||||||+++|+++.+.. +.+|.+. ....+... ..++.+|||+|++++..++ ..+++++|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~~--~~~~~~~d~ 77 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF--NVETVTYK--NLKFQVWDLGGLTSIRPYW--RCYYSNTDA 77 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE--EEEEEEET--TEEEEEEEECCCGGGGGGG--GGGCTTCSE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc--ceEEEEEC--CEEEEEEECCCChhhhHHH--HHHhccCCE
Confidence 345899999999999999999999988753 4455553 33444443 6788999999999999887 689999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 78 ii~v~d~ 84 (171)
T 1upt_A 78 VIYVVDS 84 (171)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999996
No 290
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.33 E-value=5e-13 Score=128.47 Aligned_cols=89 Identities=10% Similarity=0.029 Sum_probs=56.9
Q ss_pred CCCcc-chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHH
Q 010548 67 SSSLE-NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ 145 (507)
Q Consensus 67 ~G~~~-~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~ 145 (507)
||+.. ........+..+|+++.|+|++++.+..... +. . . ++|.++|+||+|+.+... .+....+..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l----l-~k~~iivlNK~DL~~~~~----~~~~~~~~~ 72 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F----S-RKETIILLNKVDIADEKT----TKKWVEFFK 72 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C----T-TSEEEEEEECGGGSCHHH----HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h----c-CCCcEEEEECccCCCHHH----HHHHHHHHH
Confidence 55432 3345678899999999999999986654321 11 1 1 789999999999975311 112222222
Q ss_pred HhcccCcEEEeCcccCCCchHHHHH
Q 010548 146 QFREIETCVECSATTMIQVPDVFYY 170 (507)
Q Consensus 146 ~~~~~~~~~~~SA~~g~gi~~l~~~ 170 (507)
..+. ++ .+||+++.|++++++.
T Consensus 73 ~~g~--~v-~iSa~~~~gi~~L~~~ 94 (262)
T 3cnl_A 73 KQGK--RV-ITTHKGEPRKVLLKKL 94 (262)
T ss_dssp HTTC--CE-EECCTTSCHHHHHHHH
T ss_pred HcCC--eE-EEECCCCcCHHHHHHH
Confidence 3332 56 9999999998887654
No 291
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.33 E-value=2.3e-12 Score=116.51 Aligned_cols=81 Identities=20% Similarity=0.297 Sum_probs=65.0
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad 499 (507)
..+.+||+++|++|||||||+++|+++++ ..+.++.+... ..+... ..++.+|||+|++++..++ ..+++++|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~--~~~~~~~d 90 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSSW--NTYYTNTE 90 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEET--TEEEEEEEESSSGGGTCGG--GGGGTTCC
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEEC--CEEEEEEECCCCHhHHHHH--HHHhccCC
Confidence 44569999999999999999999999988 44556665443 334443 4789999999999999887 68999999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 91 ~ii~v~D~ 98 (181)
T 2h17_A 91 FVIVVVDS 98 (181)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999996
No 292
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.33 E-value=2.7e-12 Score=119.36 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=65.3
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCC-eEEEEEEecCCchhhhh-hccchhhccccc
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG-NKKTLILQEIPEEGVKK-ILSNKEALASCD 499 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~-~~~~~~~~~~ad 499 (507)
..+||+++|++|||||||+++|+++.+...+.+++ ..+. .+.+++. ..++.+|||+|++++.. ++ ..+++++|
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--~~~~~~~~ 80 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLL--DRFKSSAR 80 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEE--EEECSSTTCCEEEEEECCCCHHHHHHHH--HHHGGGEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeE--EEEecCCCccEEEEEECCCChhHHHHHH--HHHHhhCC
Confidence 45899999999999999999999999877775443 3332 2556544 67899999999999987 55 57899999
Q ss_pred EEEEEEeC
Q 010548 500 VTIFVYDR 507 (507)
Q Consensus 500 ~vilv~D~ 507 (507)
++++|||+
T Consensus 81 ~~i~v~d~ 88 (214)
T 2fh5_B 81 AVVFVVDS 88 (214)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 99999996
No 293
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.33 E-value=3e-12 Score=117.25 Aligned_cols=83 Identities=22% Similarity=0.312 Sum_probs=61.7
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCC--CCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchh-hhhhccchhhcccc
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-VKKILSNKEALASC 498 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~a 498 (507)
..+||++||++|||||||+++|++... ...+ ++.+.++..+.+.+++...++.+|||+|++. +..+. ..+++.+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~--~~~~~~~ 81 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLH--DHCMQVG 81 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTG--GGHHHHC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHH--HhhcccC
Confidence 468999999999999999999997543 3333 3445555566777787777889999999876 44444 5788999
Q ss_pred cEEEEEEeC
Q 010548 499 DVTIFVYDR 507 (507)
Q Consensus 499 d~vilv~D~ 507 (507)
|++++|||+
T Consensus 82 ~~~i~v~dv 90 (192)
T 2cjw_A 82 DAYLIVYSI 90 (192)
T ss_dssp SEEEEEEET
T ss_pred CEEEEEEEC
Confidence 999999996
No 294
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.33 E-value=3.5e-12 Score=112.66 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=69.8
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
.+||+++|++|||||||+++++++.+...+.++.+..+ ...+...+....+.+|||+|++++..++ ..+++.+|+++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~--~~~~~~~~~~i 79 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR--DQYMRTGEGFL 79 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHH--HHHHHHCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHH--HHhhccCCEEE
Confidence 47999999999999999999999988877777776554 4455666667788999999999888877 67899999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 80 ~v~d~ 84 (166)
T 2ce2_X 80 CVFAI 84 (166)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99995
No 295
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.33 E-value=5.6e-12 Score=114.31 Aligned_cols=79 Identities=24% Similarity=0.369 Sum_probs=65.8
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||+++|++++ ...+.+|.+. ....+..+ ..++.+|||+|++++...+ ..+++++|++
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~~--~~~~~~~d~i 89 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF--NIKTLEHR--GFKLNIWDVGGQKSLRSYW--RNYFESTDGL 89 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE--EEEEEEET--TEEEEEEEECCSHHHHTTG--GGGCTTCSEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc--ceEEEEEC--CEEEEEEECCCCHhHHHHH--HHHhcCCCEE
Confidence 45899999999999999999999988 5566666663 34445443 5788999999999999887 6889999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 90 i~v~d~ 95 (186)
T 1ksh_A 90 IWVVDS 95 (186)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999995
No 296
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.32 E-value=2e-12 Score=129.77 Aligned_cols=119 Identities=15% Similarity=0.179 Sum_probs=83.4
Q ss_pred CCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCC----------hhhHHHHHHhHHHHHHhc--CCCCcEEEEEe
Q 010548 56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ----------QSTLSRLSSYWLPELRRL--EIKVPIIVAGC 123 (507)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~----------~~s~~~~~~~~~~~l~~~--~~~~piilv~N 123 (507)
.+++.+.+|||+|++.++..+..++++++++|||||+++ ..++..... |...+... ..+.|+|||+|
T Consensus 198 ~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~-~~~~i~~~~~~~~~piILv~N 276 (362)
T 1zcb_A 198 IKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN-IFETIVNNRVFSNVSIILFLN 276 (362)
T ss_dssp ETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEE
T ss_pred eCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH-HHHHHhcchhhCCCCEEEEEE
Confidence 457899999999999999999999999999999999999 778888876 66666543 35799999999
Q ss_pred cccCCCCC---------------C-ccchhhhhHHHHHHh--------cccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548 124 KLDLRGDH---------------N-ATSLEEVMGPIMQQF--------REIETCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 124 K~Dl~~~~---------------~-~~~~~~~~~~~~~~~--------~~~~~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
|+|+..+. . + ..++....+...| .....+++|||+++.||.++|+++.+.+.
T Consensus 277 K~DL~~~ki~~~~l~~~fp~y~g~~~-~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 277 KTDLLEEKVQVVSIKDYFLEFEGDPH-CLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp CHHHHHHHTTTCCGGGTCTTCCSCTT-CHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhccccchhhcCccccCCCC-CHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 99986321 1 2 2233222222221 11236789999999999999999988763
No 297
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.32 E-value=6.4e-13 Score=121.45 Aligned_cols=84 Identities=18% Similarity=0.136 Sum_probs=63.5
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCC-----------CCccceeEEEEE-EcCCCeEEEEEEecCCchhhhhh
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-----------PTTGEQYAVNVV-DQPGGNKKTLILQEIPEEGVKKI 488 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~-----------~t~~~~~~~~~~-~~~~~~~~~~i~Dt~G~~~~~~~ 488 (507)
...+||+++|++|||||||++. +.+.+...+. +|.+.++....+ ...+...++.+|||+|++++..+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~-l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHH-HHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHH-HHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 4569999999999999999954 4445554433 233333332223 44556778999999999999988
Q ss_pred ccchhhcccccEEEEEEeC
Q 010548 489 LSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 489 ~~~~~~~~~ad~vilv~D~ 507 (507)
+ ..+++++|++++|||+
T Consensus 91 ~--~~~~~~~d~~i~v~D~ 107 (198)
T 3t1o_A 91 R--KLILRGVDGIVFVADS 107 (198)
T ss_dssp H--HHHTTTCCEEEEEEEC
T ss_pred H--HHHHhcCCEEEEEEEC
Confidence 8 6899999999999996
No 298
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.32 E-value=3.2e-12 Score=113.18 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=63.3
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil 503 (507)
+||+++|++|||||||+++|+++++.. +.||.+ +....+.. +..++.+|||+|++++..++ ..+++++|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~i~ 73 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNISFTVWDVGGQDKIRPLW--RHYFQNTQGLIF 73 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEEC--SSCEEEEEECCCCGGGHHHH--HHHTTTCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEE--CCEEEEEEEcCCChhhHHHH--HHHhccCCEEEE
Confidence 589999999999999999999988764 456655 32333443 45789999999999998887 678999999999
Q ss_pred EEeC
Q 010548 504 VYDR 507 (507)
Q Consensus 504 v~D~ 507 (507)
|||+
T Consensus 74 v~d~ 77 (164)
T 1r8s_A 74 VVDS 77 (164)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9995
No 299
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.32 E-value=2e-12 Score=116.16 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=68.9
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
.+.+||+++|++|||||||+++|+++.+...+.++.+..+....+..+ ...+.+|||+|++++..++ ..+++.+|+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 81 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN--DKKITFLDTPGHEAFTTMR--ARGAQVTDI 81 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEET--TEEEEESCCCSSSSSSCSC--CSSCCCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeC--CceEEEEECCCCHHHHHHH--HHHHhhCCE
Confidence 346899999999999999999999999887777766655555555555 3567899999999998877 578899999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 82 ~i~v~d~ 88 (178)
T 2lkc_A 82 VILVVAA 88 (178)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999995
No 300
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.31 E-value=1.3e-11 Score=123.91 Aligned_cols=81 Identities=17% Similarity=0.273 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCC--CCCCeeeCCccc-------------------CCceEEEEEeCCCCc
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPP--VHAPTRLPPDFY-------------------PDRVPVTIIDTSSSL 70 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~-~~~~~~--~~~~~t~~~~~~-------------------~~~~~~~i~Dt~G~~ 70 (507)
++|+|+|.||||||||+|+|++... ..+++. ..+..... .+. .....+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~-~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV-PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE-ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE-ecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 6899999999999999999997642 122221 11221110 111 123579999999987
Q ss_pred cch----h---hhHHhhccCCEEEEEEeCCC
Q 010548 71 ENK----G---KLNEELKRADAVVLTYACNQ 94 (507)
Q Consensus 71 ~~~----~---~~~~~~~~ad~il~V~D~~~ 94 (507)
+.. . ....+++.+|++++|+|+++
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 642 1 23356899999999999986
No 301
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.31 E-value=3.5e-12 Score=117.35 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=57.7
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||+++|+++++.. +.+|.+... ..+..++ .++.+|||+|+++++.++ ..+++++|++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~ 96 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVW--KNYLPAINGI 96 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGG--GGGGGGCSEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHH--HHHHhcCCEE
Confidence 34799999999999999999999988753 556655433 3455553 789999999999999887 6899999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 97 i~v~D~ 102 (198)
T 1f6b_A 97 VFLVDC 102 (198)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999996
No 302
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.31 E-value=7.1e-12 Score=114.43 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=64.4
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||+++|+++++.. +.+|.+.. ...+..+ ..++.+|||+|++++..++ ..+++.+|++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~ 94 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIG--NIKFTTFDLGGHIQARRLW--KDYFPEVNGI 94 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEET--TEEEEEEECCCSGGGTTSG--GGGCTTCCEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEEC--CEEEEEEECCCCHHHHHHH--HHHHhcCCEE
Confidence 34799999999999999999999988763 45555543 3455555 3789999999999998877 6789999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 95 i~v~d~ 100 (190)
T 1m2o_B 95 VFLVDA 100 (190)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999996
No 303
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=4.5e-12 Score=115.18 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=61.7
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||+++|+++++. .+.+|.+... ..+... ..++.+|||+|++++..++ ..+++++|++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~i 87 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSSW--NTYYTNTEFV 87 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEET--TEEEEEEECCC----CGGG--HHHHTTCCEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEEC--CEEEEEEECCCCHhHHHHH--HHHhcCCCEE
Confidence 4589999999999999999999998887 5556665333 334443 4789999999999998887 6899999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 88 i~v~d~ 93 (187)
T 1zj6_A 88 IVVVDS 93 (187)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 999996
No 304
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.30 E-value=2e-12 Score=130.77 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=89.7
Q ss_pred CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCC----------hhhHHHHHHhHHHHHHhc--CCCCcEEEEEec
Q 010548 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ----------QSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124 (507)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~----------~~s~~~~~~~~~~~l~~~--~~~~piilv~NK 124 (507)
+++.+.+|||+|++.++..+..++++++++|||||+++ ..+++.... |+..+... ..+.|+|||+||
T Consensus 215 ~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~-~~~~i~~~~~~~~~piiLvgNK 293 (402)
T 1azs_C 215 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTISVILFLNK 293 (402)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCTTCSSCCEEEEEEC
T ss_pred CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH-HHHHHHhcccCCCCeEEEEEEC
Confidence 35789999999999999999999999999999999999 889999886 88777654 358999999999
Q ss_pred ccCCCCCC---ccc-------------------------hhhhhHHHH-HHhc----------ccCcEEEeCcccCCCch
Q 010548 125 LDLRGDHN---ATS-------------------------LEEVMGPIM-QQFR----------EIETCVECSATTMIQVP 165 (507)
Q Consensus 125 ~Dl~~~~~---~~~-------------------------~~~~~~~~~-~~~~----------~~~~~~~~SA~~g~gi~ 165 (507)
+|+...+. +.. ..+.+..++ .+|. ....+++|||+++.||.
T Consensus 294 ~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~ 373 (402)
T 1azs_C 294 QDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIR 373 (402)
T ss_dssp HHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHH
T ss_pred hhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHH
Confidence 99854211 100 012222221 1110 11246799999999999
Q ss_pred HHHHHHHHHHc
Q 010548 166 DVFYYAQKAVL 176 (507)
Q Consensus 166 ~l~~~i~~~i~ 176 (507)
++|..+.+.+.
T Consensus 374 ~vF~~v~~~I~ 384 (402)
T 1azs_C 374 RVFNDCRDIIQ 384 (402)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887663
No 305
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.29 E-value=5e-12 Score=114.48 Aligned_cols=80 Identities=25% Similarity=0.415 Sum_probs=65.0
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
.+.+||+++|++|||||||+++|++..+. .+.+|.+ +..+.+..+ ..++.+|||+|++++...+ ..+++.+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~ 86 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQ--GFKLNVWDIGGQRKIRPYW--RSYFENTDI 86 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEET--TEEEEEEECSSCGGGHHHH--HHHHTTCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEEC--CEEEEEEECCCCHHHHHHH--HHHhCCCCE
Confidence 35689999999999999999999998764 3445555 334445554 5788999999999998887 688999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 87 ~i~v~d~ 93 (181)
T 1fzq_A 87 LIYVIDS 93 (181)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999995
No 306
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.27 E-value=1.1e-11 Score=110.48 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=59.2
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh------hhccchhhcc
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEALA 496 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~~~ 496 (507)
.+||+++|++|||||||+++|++..+...+.++.+.+.....+... ..++.+|||+|++++. .+. ..+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~--~~~~~ 78 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIA--RDYII 78 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET--TEEEEEEECCCCSCSSSSSHHHHHH--HHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC--CcEEEEEECCCcccCCCcchhHHHH--HHHHh
Confidence 4799999999999999999999987765555555555545555554 3678999999998764 232 45665
Q ss_pred --cccEEEEEEeC
Q 010548 497 --SCDVTIFVYDR 507 (507)
Q Consensus 497 --~ad~vilv~D~ 507 (507)
++|++++|||+
T Consensus 79 ~~~~~~~i~v~D~ 91 (165)
T 2wji_A 79 NEKPDLVVNIVDA 91 (165)
T ss_dssp HHCCSEEEEEEET
T ss_pred cCCCCEEEEEecC
Confidence 89999999995
No 307
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.27 E-value=6e-12 Score=118.08 Aligned_cols=152 Identities=16% Similarity=0.096 Sum_probs=85.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC---CC-------------ee--e--CCccc--------------C
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH---AP-------------TR--L--PPDFY--------------P 56 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~---~~-------------~t--~--~~~~~--------------~ 56 (507)
+.++|+|+|.+|||||||+++|+...+.....++. .. .. + ...+. .
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 45899999999999999999999765433211100 00 00 0 00000 0
Q ss_pred CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccch
Q 010548 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL 136 (507)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~ 136 (507)
.+..+.++|++|...... .+-...+.++.|+|......... . .... . +.|.++|+||+|+...... .
T Consensus 117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~--~-~~~~---~--~~~~iiv~NK~Dl~~~~~~-~- 183 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE--K-HPGI---M--KTADLIVINKIDLADAVGA-D- 183 (226)
T ss_dssp GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT--T-CHHH---H--TTCSEEEEECGGGHHHHTC-C-
T ss_pred CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh--h-hhhH---h--hcCCEEEEeccccCchhHH-H-
Confidence 122566666666311110 11123455566777533211100 0 1111 1 5788999999998653222 1
Q ss_pred hhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548 137 EEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i 175 (507)
.+........++...+++++||++|.|++++|+.|.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 184 IKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp HHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 223344444443334799999999999999999998765
No 308
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.27 E-value=9.3e-12 Score=122.18 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=65.5
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchh--------hhhhccchhh
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG--------VKKILSNKEA 494 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~ 494 (507)
..+|+++|+||||||||+|+|++.++..++..+++|+..+..+... +..++.+|||+|..+ +.... ..+
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~~~l~~~~~~~~--~~~ 83 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDALGEFMDQEV--YEA 83 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSHHHHHHHHHH--HHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe-CCcEEEEecCccccchhhHHHHHHHHHH--HHH
Confidence 4589999999999999999999999987776666666655544433 567899999999865 33333 578
Q ss_pred cccccEEEEEEeC
Q 010548 495 LASCDVTIFVYDR 507 (507)
Q Consensus 495 ~~~ad~vilv~D~ 507 (507)
++.||++++|||+
T Consensus 84 l~~ad~il~VvD~ 96 (301)
T 1wf3_A 84 LADVNAVVWVVDL 96 (301)
T ss_dssp TSSCSEEEEEEET
T ss_pred HhcCCEEEEEEEC
Confidence 8999999999996
No 309
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.26 E-value=6.7e-12 Score=114.80 Aligned_cols=80 Identities=21% Similarity=0.329 Sum_probs=60.3
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
.+.+||+++|++|||||||+++|+++++.. +.||.+ +....+.. +..++.+|||+|++++..++ ..+++++|+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~ 99 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPLW--RHYFQNTQG 99 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEE--TTEEEEEEECC-----CTTH--HHHHHTCCE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHHH--HHHhccCCE
Confidence 356999999999999999999999988763 445554 33344444 46789999999999998877 678999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 100 iilv~D~ 106 (192)
T 2b6h_A 100 LIFVVDS 106 (192)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999996
No 310
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.24 E-value=9.1e-12 Score=113.29 Aligned_cols=79 Identities=23% Similarity=0.330 Sum_probs=64.5
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v 501 (507)
+.+||+++|++|||||||+++|+++++.. +.+|.+.. ...+.. +..++.+|||+|++++..++ ..+++++|++
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~Dt~G~~~~~~~~--~~~~~~~d~i 93 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQY--KNISFEVWDLGGQTGVRPYW--RCYFSDTDAV 93 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEE--TTEEEEEEEECCSSSSCCCC--SSSSTTCCEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEE--CCEEEEEEECCCCHhHHHHH--HHHhhcCCEE
Confidence 45899999999999999999999888754 45555532 334444 36788999999999998877 6789999999
Q ss_pred EEEEeC
Q 010548 502 IFVYDR 507 (507)
Q Consensus 502 ilv~D~ 507 (507)
++|||+
T Consensus 94 i~v~d~ 99 (189)
T 2x77_A 94 IYVVDS 99 (189)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 999996
No 311
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.24 E-value=6.8e-12 Score=113.26 Aligned_cols=80 Identities=23% Similarity=0.280 Sum_probs=61.4
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
++.+||+++|++|||||||+++++++++ ..+.++.+.. ...+... ..++.+|||+|++++...+ ..+++++|+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~ 88 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYK--NLKLNVWDLGGQTSIRPYW--RCYYADTAA 88 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEET--TEEEEEEEEC----CCTTG--GGTTTTEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEEC--CEEEEEEECCCCHhHHHHH--HHHhccCCE
Confidence 3568999999999999999999998887 4455666633 3344443 4788999999999988877 688999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 89 ii~v~d~ 95 (183)
T 1moz_A 89 VIFVVDS 95 (183)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999995
No 312
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.88 E-value=7.6e-13 Score=122.18 Aligned_cols=84 Identities=20% Similarity=0.357 Sum_probs=70.1
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||+++|++|||||||+++|+++.+...+.++.+..+ ...+...+....+.+|||+|++++..++ ..+++++|+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~ 104 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLR--PLSYPQTDV 104 (204)
Confidence 4569999999999999999999999988777777766544 3344555567788899999999998887 678999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 105 iilv~D~ 111 (204)
T 3th5_A 105 FLICFSL 111 (204)
Confidence 9999995
No 313
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.23 E-value=9.6e-12 Score=114.05 Aligned_cols=86 Identities=16% Similarity=0.083 Sum_probs=59.4
Q ss_pred ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEE--Ec-CCCeEEEEEEecCCchhhhhhcc-chhh
Q 010548 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV--DQ-PGGNKKTLILQEIPEEGVKKILS-NKEA 494 (507)
Q Consensus 419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~--~~-~~~~~~~~i~Dt~G~~~~~~~~~-~~~~ 494 (507)
...+.+||+++|++|||||||++++.++... . ++.+..+..+.+ .+ .+...++.+|||+|+++|..... ...+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 3445799999999999999999988775332 2 233322222222 22 35677899999999999875531 1378
Q ss_pred cccccEEEEEEeC
Q 010548 495 LASCDVTIFVYDR 507 (507)
Q Consensus 495 ~~~ad~vilv~D~ 507 (507)
++++|++++|||+
T Consensus 93 ~~~~~~~i~v~d~ 105 (196)
T 3llu_A 93 FRGTGALIYVIDA 105 (196)
T ss_dssp HHTCSEEEEEEET
T ss_pred cccCCEEEEEEEC
Confidence 9999999999996
No 314
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.23 E-value=1.8e-11 Score=120.71 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=63.1
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCC---CCCCccceeEEEEEEcCCCeEEEEEEecCCchhh-----hhhccchh
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-----KKILSNKE 493 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----~~~~~~~~ 493 (507)
..+||+++|++|||||||+++|+++..... +.+|.+..+. .+.+. +..++.+|||+|++++ ..++ ..
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~--~~ 76 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFL-GNMTLNLWDCGGQDVFMENYFTKQK--DH 76 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEET-TTEEEEEEEECCSHHHHHHHHTTTH--HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeC-CceEEEEEECCCcHHHhhhhhhhHH--HH
Confidence 358999999999999999999998854433 3345554443 34444 4788999999999988 5555 67
Q ss_pred hcccccEEEEEEeC
Q 010548 494 ALASCDVTIFVYDR 507 (507)
Q Consensus 494 ~~~~ad~vilv~D~ 507 (507)
+++++|++++|||+
T Consensus 77 ~~~~ad~vi~V~D~ 90 (307)
T 3r7w_A 77 IFQMVQVLIHVFDV 90 (307)
T ss_dssp HHTTCSEEEEEEET
T ss_pred HhccCCEEEEEEEC
Confidence 88999999999996
No 315
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.21 E-value=8.6e-12 Score=122.29 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=60.7
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCC---CCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh---hccchhhcccc
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSE---NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK---ILSNKEALASC 498 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~a 498 (507)
||+++|++|||||||++++.++-+.. .+.+|.+..+.. + . ..++++||||+||++|.. .. ..||++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~--~~yyr~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDS--ERLFKSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHH--HHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhh--hhhccCC
Confidence 68999999999999999988664432 245777776642 2 3 568899999999999964 23 6899999
Q ss_pred cEEEEEEeC
Q 010548 499 DVTIFVYDR 507 (507)
Q Consensus 499 d~vilv~D~ 507 (507)
+++|+|||+
T Consensus 74 ~~~IlV~Di 82 (331)
T 3r7w_B 74 GALVYVIDS 82 (331)
T ss_dssp SEEEEECCC
T ss_pred CEEEEEEEC
Confidence 999999996
No 316
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.21 E-value=4.2e-11 Score=118.95 Aligned_cols=84 Identities=20% Similarity=0.361 Sum_probs=71.5
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
...+||+++|.+|||||||+++|+++.+...+.++.+..+ ...+...+....+.+|||+|++++..+. ..+++.+|+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 229 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLR--PLSYPQTDV 229 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTG--GGGCTTCSE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHH--HHhccCCCE
Confidence 3458999999999999999999999998877777776544 4455666677788899999999998877 678999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+++|||+
T Consensus 230 ~i~v~d~ 236 (332)
T 2wkq_A 230 FLICFSL 236 (332)
T ss_dssp EEEEEET
T ss_pred EEEEEeC
Confidence 9999996
No 317
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.20 E-value=2.6e-11 Score=108.85 Aligned_cols=83 Identities=19% Similarity=0.208 Sum_probs=60.4
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCC-CCccceeEEEEEEcCCCeEEEEEEecCCchhhhh------hccchhhc
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEAL 495 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~~ 495 (507)
.+||+++|++|||||||+|+|++..+..... ++.+.++....+..+ ...+.+|||+|++++.. +.+...++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID--GMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET--TEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEEC--CeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 4799999999999999999999987654433 333444555566665 34578999999865321 11123578
Q ss_pred ccccEEEEEEeC
Q 010548 496 ASCDVTIFVYDR 507 (507)
Q Consensus 496 ~~ad~vilv~D~ 507 (507)
+.+|++++|||+
T Consensus 82 ~~ad~~i~v~D~ 93 (172)
T 2gj8_A 82 EQADRVLFMVDG 93 (172)
T ss_dssp HTCSEEEEEEET
T ss_pred HhCCEEEEEEEC
Confidence 999999999996
No 318
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.9e-11 Score=122.71 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=77.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchh-------hhHHhhc
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKG-------KLNEELK 81 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~ 81 (507)
..+|+|||.||||||||+|+|++.+.. ....+.+| ....+...+.++.++||||..+... ..-..++
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~---v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESE---AAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCC---GGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCc---ccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 358999999999999999999987632 22233344 2223445678999999999754221 2235679
Q ss_pred cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCC
Q 010548 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRG 129 (507)
Q Consensus 82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~ 129 (507)
.||++++|+|++++. .+... +..++.... ..+|.+++.||+|...
T Consensus 149 ~ad~il~vvD~~~p~--~~~~~-i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 149 TCNLLFIILDVNKPL--HHKQI-IEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp HCSEEEEEEETTSHH--HHHHH-HHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred hcCccccccccCccH--HHHHH-HHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 999999999999873 33332 444454432 2578899999999743
No 319
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.17 E-value=4.7e-11 Score=108.29 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=63.5
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh------hhccchhhc
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEAL 495 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~~ 495 (507)
+.+||+++|++|||||||+++|++..+...+.++.+.+.....+... ...+.+|||+|++++. .+. ..++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~--~~~~ 81 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIA--RDYI 81 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHH--HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHH--HHHH
Confidence 46899999999999999999999987665555666655555555554 4788999999998774 233 4555
Q ss_pred c--cccEEEEEEeC
Q 010548 496 A--SCDVTIFVYDR 507 (507)
Q Consensus 496 ~--~ad~vilv~D~ 507 (507)
+ .+|++++|+|+
T Consensus 82 ~~~~~~~~i~v~d~ 95 (188)
T 2wjg_A 82 INEKPDLVVNIVDA 95 (188)
T ss_dssp HHHCCSEEEEEEEG
T ss_pred hccCCCEEEEEecc
Confidence 4 49999999995
No 320
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.17 E-value=5.9e-11 Score=116.95 Aligned_cols=86 Identities=26% Similarity=0.259 Sum_probs=68.9
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh----------hhc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK----------KIL 489 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 489 (507)
..+.-.|+++|+||||||||+|+|++.++...+..+++++.....+...+...++.+|||+|..++. ...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 3456789999999999999999999999988887777777666555554337889999999985433 333
Q ss_pred cchhhcccccEEEEEEeC
Q 010548 490 SNKEALASCDVTIFVYDR 507 (507)
Q Consensus 490 ~~~~~~~~ad~vilv~D~ 507 (507)
..+++.+|++++|+|+
T Consensus 87 --~~~l~~aD~il~VvD~ 102 (308)
T 3iev_A 87 --KQSLEEADVILFMIDA 102 (308)
T ss_dssp --HHHHHHCSEEEEEEET
T ss_pred --HHHhhcCCEEEEEEeC
Confidence 5788999999999996
No 321
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.14 E-value=4.8e-11 Score=108.86 Aligned_cols=82 Identities=16% Similarity=0.213 Sum_probs=55.0
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCC----------chhhhhhcc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP----------EEGVKKILS 490 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~~~~~~ 490 (507)
...+||+++|++|||||||+|+|+++++...+.++.++.........+ . ++.+|||+| ++.+..+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~- 96 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-D--ELHFVDVPGYGFAKVSKSEREAWGRMI- 96 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-T--TEEEEECCCBCCCSSCHHHHHHHHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-C--cEEEEECCCCCccccCHHHHHHHHHHH-
Confidence 456899999999999999999999998655554444433333333443 2 578899999 77777766
Q ss_pred chhhcccc---cEEEEEEeC
Q 010548 491 NKEALASC---DVTIFVYDR 507 (507)
Q Consensus 491 ~~~~~~~a---d~vilv~D~ 507 (507)
..+++.+ |++++|||+
T Consensus 97 -~~~~~~~~~~~~~i~v~d~ 115 (195)
T 1svi_A 97 -ETYITTREELKAVVQIVDL 115 (195)
T ss_dssp -HHHHHHCTTEEEEEEEEET
T ss_pred -HHHHhhhhcCCEEEEEEEC
Confidence 5677776 999999995
No 322
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.13 E-value=8e-11 Score=103.63 Aligned_cols=80 Identities=21% Similarity=0.318 Sum_probs=55.5
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCC-CCccceeEEEEEEcCCCeEEEEEEecCCchhh-------hhhccchhhc
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-------KKILSNKEAL 495 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~ 495 (507)
.||+++|++|||||||+++|++..+..... ++.+.......+... ...+.+|||+|...+ .... ..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~--~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETD--RGRFLLVDTGGLWSGDKWEKKIQEKV--DRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEET--TEEEEEEECGGGCSSSSCCHHHHHHH--HHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeC--CceEEEEECCCCCCccchHHHHHHHH--HHHH
Confidence 589999999999999999999988653332 333334444445554 347889999998763 3333 4678
Q ss_pred ccccEEEEEEeC
Q 010548 496 ASCDVTIFVYDR 507 (507)
Q Consensus 496 ~~ad~vilv~D~ 507 (507)
+.+|++++|||+
T Consensus 78 ~~~~~~i~v~d~ 89 (161)
T 2dyk_A 78 EDAEVVLFAVDG 89 (161)
T ss_dssp TTCSEEEEEEES
T ss_pred HhCCEEEEEEEC
Confidence 999999999995
No 323
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.12 E-value=8.6e-11 Score=117.13 Aligned_cols=106 Identities=8% Similarity=0.021 Sum_probs=64.6
Q ss_pred CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccch
Q 010548 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL 136 (507)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~ 136 (507)
.+..+.++||+|..... ......+|++++|+|+..+...+.+.. .+. ..|.++|+||+|+...... .
T Consensus 146 ~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~----~i~----~~~~ivvlNK~Dl~~~~~~--s 212 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK----GIF----ELADMIAVNKADDGDGERR--A 212 (337)
T ss_dssp TTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT----THH----HHCSEEEEECCSTTCCHHH--H
T ss_pred CCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH----HHh----ccccEEEEEchhccCchhH--H
Confidence 46789999999975432 234578999999999875532221111 111 2466788899997542111 1
Q ss_pred hhhhHHHHHHh---c-----ccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548 137 EEVMGPIMQQF---R-----EIETCVECSATTMIQVPDVFYYAQKAV 175 (507)
Q Consensus 137 ~~~~~~~~~~~---~-----~~~~~~~~SA~~g~gi~~l~~~i~~~i 175 (507)
......+.... . ...+++.+||+++.|++++++.|.+..
T Consensus 213 ~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 213 SAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp HHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11122222211 1 013689999999999999999998764
No 324
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.11 E-value=1.9e-10 Score=121.15 Aligned_cols=80 Identities=21% Similarity=0.264 Sum_probs=65.5
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
.+.+||+++|++|||||||+++|+++++... .+|.+..+ ..+.. +..++.+|||+|++++..++ ..+++++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~-~~T~~~~~--~~~~~--~~~~~~l~Dt~G~~~~~~~~--~~~~~~ad~ 392 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNV--ETVTY--KNVKFNVWDVGGQDKIRPLW--RHYYTGTQG 392 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEE--EEEES--SSCEEEEEEECCCGGGSGGG--GGGGTTCCE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCc-CCccceeE--EEEEe--CCEEEEEEECCCcHHHHHHH--HHHhccCCE
Confidence 4569999999999999999999999986543 35555433 33444 45789999999999999887 789999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+|+|||+
T Consensus 393 ~i~V~D~ 399 (497)
T 3lvq_E 393 LIFVVDC 399 (497)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999996
No 325
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.11 E-value=1e-10 Score=110.87 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=58.1
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCC--CccceeEEEEEEcCCCeEEEEEEecCCc-----------hhhhh
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPGGNKKTLILQEIPE-----------EGVKK 487 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------~~~~~ 487 (507)
...+||+++|++|||||||+|++++..+.....+ +.+.......+... ...+.+|||+|. +.+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK--ETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET--TEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC--CceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 4569999999999999999999999988666555 33333434444443 457889999993 33443
Q ss_pred hccchhhcccccEEEEEEeC
Q 010548 488 ILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 488 ~~~~~~~~~~ad~vilv~D~ 507 (507)
.. ..+++++|++++|+|+
T Consensus 105 ~~--~~~~~~~~~~l~v~d~ 122 (239)
T 3lxx_A 105 CI--LLTSPGPHALLLVVPL 122 (239)
T ss_dssp HH--HHTTTCCSEEEEEEET
T ss_pred HH--HhcCCCCcEEEEEeeC
Confidence 33 3566789999999995
No 326
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.10 E-value=6.2e-11 Score=117.93 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=60.1
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~ 500 (507)
.+.+||+++|++|||||||+++|+++.+...+ +|.+..+ ..+.. +..++.+|||+|++++..++ ..+++.+|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~~--~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~ 235 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLW--RHYFQNTQG 235 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEEE--TTEEEEEEECC-----CCSH--HHHHTTEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEec--CcEEEEEEECCCCHhHHHHH--HHHhccCCE
Confidence 45689999999999999999999999876443 4444333 23333 56789999999999999887 789999999
Q ss_pred EEEEEeC
Q 010548 501 TIFVYDR 507 (507)
Q Consensus 501 vilv~D~ 507 (507)
+|+|||+
T Consensus 236 vilV~D~ 242 (329)
T 3o47_A 236 LIFVVDS 242 (329)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999996
No 327
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.10 E-value=1e-10 Score=111.57 Aligned_cols=85 Identities=15% Similarity=0.004 Sum_probs=54.1
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCc-cceeEE-EEEEcCCCeEEEEEEecCCc--------hhh-hhhc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTT-GEQYAV-NVVDQPGGNKKTLILQEIPE--------EGV-KKIL 489 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~-~~~~~~-~~~~~~~~~~~~~i~Dt~G~--------~~~-~~~~ 489 (507)
...+||+++|.+|||||||+|++++.+......++. +|.... ..+.. +...+.+|||+|. +.+ ..+.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~--~~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW--DKCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE--TTEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE--CCcEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 456999999999999999999999998876655442 333322 22333 4667889999996 222 2221
Q ss_pred cc-hhhcccccEEEEEEeC
Q 010548 490 SN-KEALASCDVTIFVYDR 507 (507)
Q Consensus 490 ~~-~~~~~~ad~vilv~D~ 507 (507)
+. ..+.+++|++++|+|+
T Consensus 97 ~~~~~~~~~~d~il~V~d~ 115 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQL 115 (247)
T ss_dssp HHHHHHTTCCSEEEEEEET
T ss_pred HHHHhcCCCCCEEEEEEeC
Confidence 00 1123899999999995
No 328
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.10 E-value=1.2e-11 Score=118.50 Aligned_cols=86 Identities=17% Similarity=0.153 Sum_probs=60.8
Q ss_pred cCceEEEEEecCC---------CCchHHHHHHHhc---CCCCCCCCCCc-cceeEEEEE--------------EcCCCeE
Q 010548 420 ERNVFRCLLFGPQ---------NAGKSALLNSFLE---RPFSENYAPTT-GEQYAVNVV--------------DQPGGNK 472 (507)
Q Consensus 420 ~~~~~kv~ivG~~---------~vGKSsll~~l~~---~~~~~~~~~t~-~~~~~~~~~--------------~~~~~~~ 472 (507)
..+.+||+++|++ |||||||+++|++ ..+...+.++. +.++..+.+ ..++...
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4456999999999 9999999999999 56666666654 333322211 1344667
Q ss_pred EEEEEe-----------------------cCCchhhhhhccchhhcc---------------------cccEEEEEEeC
Q 010548 473 KTLILQ-----------------------EIPEEGVKKILSNKEALA---------------------SCDVTIFVYDR 507 (507)
Q Consensus 473 ~~~i~D-----------------------t~G~~~~~~~~~~~~~~~---------------------~ad~vilv~D~ 507 (507)
++.||| ++|+++|.+++ ..+++ +||++++|||+
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAE--KLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTT--CBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhh--hhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 899999 77888888776 45666 79999999996
No 329
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.08 E-value=7e-11 Score=110.00 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=60.2
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCC---CCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 497 (507)
...+||+++|++|||||||+++|++..+... +.++.+..+ ....+.+|||+|++++...+ ..+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~--~~~~~~ 78 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKL--SDYLKT 78 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHH--HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHH--HHHHHh
Confidence 3568999999999999999999999887542 333333322 45578899999999998776 567777
Q ss_pred ----ccEEEEEEeC
Q 010548 498 ----CDVTIFVYDR 507 (507)
Q Consensus 498 ----ad~vilv~D~ 507 (507)
+|++++|||+
T Consensus 79 ~~~~~~~~i~v~D~ 92 (218)
T 1nrj_B 79 RAKFVKGLIFMVDS 92 (218)
T ss_dssp HGGGEEEEEEEEET
T ss_pred ccccCCEEEEEEEC
Confidence 8999999996
No 330
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.07 E-value=2.2e-10 Score=107.62 Aligned_cols=82 Identities=20% Similarity=0.169 Sum_probs=56.5
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCc------hh----hhhhcc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE------EG----VKKILS 490 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------~~----~~~~~~ 490 (507)
...+||+++|++|||||||+|+|+++.+.....+..+.......... +...+.+|||+|+ ++ +..+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-- 102 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH--KLNKYQIIDTPGLLDRAFENRNTIEMTTI-- 102 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE--TTEEEEEEECTTTTTSCGGGCCHHHHHHH--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec--CCCeEEEEECCCCcCcccchhhhHHHHHH--
Confidence 34689999999999999999999999876333233233333333333 3467899999998 43 3322
Q ss_pred chhhcccccEEEEEEeC
Q 010548 491 NKEALASCDVTIFVYDR 507 (507)
Q Consensus 491 ~~~~~~~ad~vilv~D~ 507 (507)
..+++.+|++++|||+
T Consensus 103 -~~~~~~~d~~i~v~d~ 118 (228)
T 2qu8_A 103 -TALAHINGVILFIIDI 118 (228)
T ss_dssp -HHHHTSSEEEEEEEET
T ss_pred -HHhhccccEEEEEEec
Confidence 2357889999999996
No 331
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.07 E-value=2.7e-10 Score=109.26 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=61.1
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhcc----chhhc--
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS----NKEAL-- 495 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----~~~~~-- 495 (507)
+.+||+++|.+|||||||+|+|++..+.....+..+.......+.. +...+.+|||+|...+..... ...++
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY--KGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE--CCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 4589999999999999999999998876444454444443333333 457899999999987664210 13454
Q ss_pred ccccEEEEEEeC
Q 010548 496 ASCDVTIFVYDR 507 (507)
Q Consensus 496 ~~ad~vilv~D~ 507 (507)
..+|++++|+|+
T Consensus 82 ~~~d~ii~V~D~ 93 (258)
T 3a1s_A 82 GDADLVILVADS 93 (258)
T ss_dssp SCCSEEEEEEET
T ss_pred cCCCEEEEEeCC
Confidence 589999999996
No 332
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.06 E-value=1.8e-10 Score=110.35 Aligned_cols=80 Identities=19% Similarity=0.130 Sum_probs=61.8
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh----------hccchh
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK----------ILSNKE 493 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~~ 493 (507)
.||+++|.+|||||||+|+|++........++.+.+.....+... ...+.+|||+|...+.. +. ..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~e~i~--~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG--EHLIEITDLPGVYSLVANAEGISQDEQIA--AQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET--TEEEEEEECCCCSSCC------CHHHHHH--HH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC--CeEEEEEeCCCcccccccccCCCHHHHHH--HH
Confidence 389999999999999999999987655555666655655556555 34788999999977653 22 45
Q ss_pred hc--ccccEEEEEEeC
Q 010548 494 AL--ASCDVTIFVYDR 507 (507)
Q Consensus 494 ~~--~~ad~vilv~D~ 507 (507)
++ +++|++++|+|+
T Consensus 78 ~~~~~~~d~vi~VvDa 93 (256)
T 3iby_A 78 SVIDLEYDCIINVIDA 93 (256)
T ss_dssp HHHHSCCSEEEEEEEG
T ss_pred HHhhCCCCEEEEEeeC
Confidence 66 899999999995
No 333
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.05 E-value=1.4e-10 Score=111.92 Aligned_cols=80 Identities=20% Similarity=0.135 Sum_probs=58.2
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh------hhccchhhcc
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEALA 496 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~~~ 496 (507)
.+||+++|+||||||||+|+|++........+..+.+. +...+.. ..++.+|||+|+.++. .+. ..+++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~--~~~~~ 77 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVA--RDYLL 77 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHH--HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHH--HHHHh
Confidence 47999999999999999999998764433334333322 2334443 5678899999998875 233 45665
Q ss_pred --cccEEEEEEeC
Q 010548 497 --SCDVTIFVYDR 507 (507)
Q Consensus 497 --~ad~vilv~D~ 507 (507)
++|++++|||+
T Consensus 78 ~~~~d~vi~V~D~ 90 (272)
T 3b1v_A 78 SQRADSILNVVDA 90 (272)
T ss_dssp TTCCSEEEEEEEG
T ss_pred cCCCCEEEEEecC
Confidence 69999999995
No 334
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.05 E-value=5.5e-11 Score=108.37 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=55.1
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCC---CCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 497 (507)
.+.+||+++|++|||||||+++|++..+... +.++.+..+ ....+.+|||+|.+.+...+ ..+++.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~--~~~~~~ 114 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKL--SDYLKT 114 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCH--HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHH--HHHHHh
Confidence 3568999999999999999999999886541 222222222 34567889999999887666 456665
Q ss_pred ----ccEEEEEEeC
Q 010548 498 ----CDVTIFVYDR 507 (507)
Q Consensus 498 ----ad~vilv~D~ 507 (507)
+|++++|||+
T Consensus 115 ~~~~~~~~i~v~d~ 128 (193)
T 2ged_A 115 RAKFVKGLIFMVDS 128 (193)
T ss_dssp HGGGEEEEEEEEET
T ss_pred hcccCCEEEEEEEC
Confidence 8999999996
No 335
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.04 E-value=3.7e-10 Score=108.38 Aligned_cols=85 Identities=21% Similarity=0.191 Sum_probs=58.5
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCC-CCCC-ccceeEEEEEEcCCCeEEEEEEecCCchhhhhhc---------
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN-YAPT-TGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL--------- 489 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~-~~~t-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------- 489 (507)
...++|+++|.+|||||||+|++++...... +.++ .+.......+.. +..++.+|||+|...+....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW--GNREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE--TTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe--CCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 3568999999999999999999998884433 3343 233333333333 35678999999976542111
Q ss_pred cchhhcccccEEEEEEeC
Q 010548 490 SNKEALASCDVTIFVYDR 507 (507)
Q Consensus 490 ~~~~~~~~ad~vilv~D~ 507 (507)
....+++.+|++++|||+
T Consensus 98 ~~~~~~~~~d~il~V~d~ 115 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQL 115 (260)
T ss_dssp HHHHHTTCCSEEEEEEET
T ss_pred HHHhcCCCCcEEEEEEeC
Confidence 012367899999999996
No 336
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.04 E-value=9.2e-11 Score=121.97 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=45.2
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeE-EEEEEcCCCeEEEEEEecCCchhhhhhc------cchhh
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYA-VNVVDQPGGNKKTLILQEIPEEGVKKIL------SNKEA 494 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------~~~~~ 494 (507)
..+||+++|+||||||||+|+|++.++..+...+++++.. ...+..+ +..+.+|||+|++.+.... .+..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~--g~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHD--KTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEET--TEEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--CeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 4589999999999999999999999876666555555443 3444554 4678999999997765432 23568
Q ss_pred cccccEEEEEEeC
Q 010548 495 LASCDVTIFVYDR 507 (507)
Q Consensus 495 ~~~ad~vilv~D~ 507 (507)
++.||++++|||+
T Consensus 310 ~~~aD~vl~VvD~ 322 (476)
T 3gee_A 310 MAEADLILYLLDL 322 (476)
T ss_dssp CSSCSEEEEEEET
T ss_pred cccCCEEEEEEEC
Confidence 8999999999996
No 337
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.04 E-value=1.9e-10 Score=107.46 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=58.8
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCC-CCCCCCCccceeEEEEEEcC-CCeEEEEEEecCC----------chhhhhh
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIP----------EEGVKKI 488 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~-~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G----------~~~~~~~ 488 (507)
...+||+++|.+|||||||+|+|++.++ ......++++... ...... .+...+.+|||+| ++++..+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI-NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE-EEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce-EEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 3468999999999999999999999874 3333333333332 222232 3567788999999 4555555
Q ss_pred ccchhhccc---ccEEEEEEeC
Q 010548 489 LSNKEALAS---CDVTIFVYDR 507 (507)
Q Consensus 489 ~~~~~~~~~---ad~vilv~D~ 507 (507)
. ..+++. +|++++|+|+
T Consensus 106 ~--~~~~~~~~~~d~vi~v~d~ 125 (223)
T 4dhe_A 106 L--SSYLQTRPQLCGMILMMDA 125 (223)
T ss_dssp H--HHHHHHCTTEEEEEEEEET
T ss_pred H--HHHHhcCcCcCEEEEEEeC
Confidence 4 456655 8889999995
No 338
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.04 E-value=2e-10 Score=122.04 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=61.9
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEE------EEc--CCCeEEEEEEecCCchhhhhhccc
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV------VDQ--PGGNKKTLILQEIPEEGVKKILSN 491 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~------~~~--~~~~~~~~i~Dt~G~~~~~~~~~~ 491 (507)
....+||+++|.+|||||||++++++..+...+.+|.+..+..+. +.. .+...++.+|||+|++.+..+.
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~-- 115 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH-- 115 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC--
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH--
Confidence 345699999999999999999999999998888888887665442 122 2346789999999999999877
Q ss_pred hhhcccccEEEEEEeC
Q 010548 492 KEALASCDVTIFVYDR 507 (507)
Q Consensus 492 ~~~~~~ad~vilv~D~ 507 (507)
..+++.+|++++|||+
T Consensus 116 ~~~l~~~d~ii~V~D~ 131 (535)
T 3dpu_A 116 QFFMTRSSVYMLLLDS 131 (535)
T ss_dssp HHHHHSSEEEEEEECG
T ss_pred HHHccCCcEEEEEEeC
Confidence 6789999999999995
No 339
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.02 E-value=3.3e-10 Score=109.66 Aligned_cols=83 Identities=16% Similarity=0.130 Sum_probs=60.8
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhcc--------chhh
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS--------NKEA 494 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~~~~ 494 (507)
.++|+++|.+|||||||+|+|++..+...+.++.+.+.....+... ...+.+|||+|...+..... ...+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECS--SCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeC--CCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 4899999999999999999999988654455555555555556654 34678899999877663210 0223
Q ss_pred c--ccccEEEEEEeC
Q 010548 495 L--ASCDVTIFVYDR 507 (507)
Q Consensus 495 ~--~~ad~vilv~D~ 507 (507)
+ +.+|++++|+|+
T Consensus 81 ~~~~~~d~ii~VvD~ 95 (274)
T 3i8s_A 81 ILSGDADLLINVVDA 95 (274)
T ss_dssp HHHTCCSEEEEEEEG
T ss_pred HhhcCCCEEEEEecC
Confidence 2 799999999995
No 340
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.02 E-value=3.9e-10 Score=109.00 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=62.8
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh------hccchhhc-
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEAL- 495 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~~- 495 (507)
.+||+++|++|||||||+|+|++..+...+.++.+.+.....+... ...+.+|||+|+..+.. +. ..++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~--~~~~~ 78 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR--EKEFLVVDLPGIYSLTAHSIDELIA--RNFIL 78 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET--TEEEEEEECCCCSCCCSSCHHHHHH--HHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC--CceEEEEeCCCccccccCCHHHHHH--HHhhh
Confidence 5799999999999999999999988755555666666655555554 45688999999987665 33 3455
Q ss_pred -ccccEEEEEEeC
Q 010548 496 -ASCDVTIFVYDR 507 (507)
Q Consensus 496 -~~ad~vilv~D~ 507 (507)
.++|++++|+|+
T Consensus 79 ~~~~d~vi~v~D~ 91 (271)
T 3k53_A 79 DGNADVIVDIVDS 91 (271)
T ss_dssp TTCCSEEEEEEEG
T ss_pred ccCCcEEEEEecC
Confidence 689999999995
No 341
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.00 E-value=6.4e-10 Score=106.92 Aligned_cols=82 Identities=20% Similarity=0.199 Sum_probs=58.8
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCc-cceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcc----
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTT-GEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALA---- 496 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---- 496 (507)
..+||+++|.+|||||||+|+|++.++...+...+ +.......+.. +...+.+|||+|+..+.... ..+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~l~liDTpG~~~~~~~~--~~~~~~i~~ 110 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVEAGYVN--HQALELIKG 110 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE--TTEEEEEEECCCSEETTEEC--HHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE--CCeeEEEEECCCCCCcccch--HHHHHHHHH
Confidence 56999999999999999999999988754444333 33333333333 45688999999998776443 23332
Q ss_pred -----cccEEEEEEeC
Q 010548 497 -----SCDVTIFVYDR 507 (507)
Q Consensus 497 -----~ad~vilv~D~ 507 (507)
++|++++|+|+
T Consensus 111 ~l~~~~~~~il~V~~~ 126 (262)
T 3def_A 111 FLVNRTIDVLLYVDRL 126 (262)
T ss_dssp HTTTCEECEEEEEEES
T ss_pred HHhcCCCCEEEEEEcC
Confidence 78999999874
No 342
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.99 E-value=8e-10 Score=100.42 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=58.6
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCC----------chhhhhhcc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP----------EEGVKKILS 490 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~~~~~~ 490 (507)
...+||+++|++|||||||+++|++..+......++.+.. ......+ . ++.+|||+| ++.+..+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~-~~~~~~~-~--~~~i~Dt~G~~~~~~~~~~~~~~~~~~- 95 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRS-INFYLVN-S--KYYFVDLPGYGYAKVSKKERMLWKRLV- 95 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCC-EEEEEET-T--TEEEEECCCBSSSCCCHHHHHHHHHHH-
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccC-eEEEEEC-C--cEEEEECCCCccccCChhhHHHHHHHH-
Confidence 4568999999999999999999999986554444443333 3333333 2 467899999 66677666
Q ss_pred chhhcccc---cEEEEEEeC
Q 010548 491 NKEALASC---DVTIFVYDR 507 (507)
Q Consensus 491 ~~~~~~~a---d~vilv~D~ 507 (507)
..+++.+ |++++|+|+
T Consensus 96 -~~~~~~~~~~~~vi~v~d~ 114 (195)
T 3pqc_A 96 -EDYFKNRWSLQMVFLLVDG 114 (195)
T ss_dssp -HHHHHHCTTEEEEEEEEET
T ss_pred -HHHHhcCcCceEEEEEecC
Confidence 5666665 999999995
No 343
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.99 E-value=5.5e-10 Score=109.63 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=61.7
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCch-hhhh------hccchhhc
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE-GVKK------ILSNKEAL 495 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~------~~~~~~~~ 495 (507)
..+|+++|+||||||||+|++++.++...+..+++++.....+... +..++.+|||+|.. +... ......++
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE-CCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 3589999999999999999999998876665555555444333333 56688899999987 3211 11125678
Q ss_pred ccccEEEEEEeC
Q 010548 496 ASCDVTIFVYDR 507 (507)
Q Consensus 496 ~~ad~vilv~D~ 507 (507)
+.+|++++|+|+
T Consensus 87 ~~~D~vl~Vvd~ 98 (301)
T 1ega_A 87 GDVELVIFVVEG 98 (301)
T ss_dssp CCEEEEEEEEET
T ss_pred hcCCEEEEEEeC
Confidence 999999999995
No 344
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.96 E-value=3.1e-10 Score=102.87 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=54.3
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCC-----------chhhhhhccch
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-----------EEGVKKILSNK 492 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G-----------~~~~~~~~~~~ 492 (507)
+||+++|++|||||||+++|++..+...+.++.+... ..+... ++.+|||+| ++++.... .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~ 73 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEI--V 73 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHH--H
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHH--H
Confidence 6999999999999999999999998776666554332 222222 578899999 67777666 4
Q ss_pred hhccc-cc---EEEEEEe
Q 010548 493 EALAS-CD---VTIFVYD 506 (507)
Q Consensus 493 ~~~~~-ad---~vilv~D 506 (507)
.+++. ++ +++.|.|
T Consensus 74 ~~~~~~~~~~~~v~~v~d 91 (190)
T 2cxx_A 74 HFIEDNAKNIDVAVLVVD 91 (190)
T ss_dssp HHHHHHGGGCCEEEEEEE
T ss_pred HHHHhhhccCCEEEEEEc
Confidence 56665 54 5555555
No 345
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.95 E-value=2.1e-10 Score=119.35 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=63.3
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccce-eEEEEEEcCCCeEEEEEEecCCch-hhhhh------ccchh
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ-YAVNVVDQPGGNKKTLILQEIPEE-GVKKI------LSNKE 493 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~~------~~~~~ 493 (507)
..+||+++|.||||||||+|+|++.++..+.+.+++|+ .....+.++ +..+.+|||+|.+ .+... ..+..
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~--g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR--GILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET--TEEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecC--CeEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 34899999999999999999999998766665555444 334455554 4578999999997 54321 12257
Q ss_pred hcccccEEEEEEeC
Q 010548 494 ALASCDVTIFVYDR 507 (507)
Q Consensus 494 ~~~~ad~vilv~D~ 507 (507)
+++.||++++|||+
T Consensus 320 ~~~~aD~vl~VvD~ 333 (482)
T 1xzp_A 320 EIEKADIVLFVLDA 333 (482)
T ss_dssp HHHHCSEEEEEEET
T ss_pred HhhcccEEEEEecC
Confidence 88999999999995
No 346
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.93 E-value=1.7e-09 Score=104.46 Aligned_cols=86 Identities=19% Similarity=0.103 Sum_probs=59.4
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccc-----hh--
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSN-----KE-- 493 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-----~~-- 493 (507)
...+||+++|.+|||||||+|+|++..+...+...+++..... .....+..++.+|||+|...+..+... ..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVM-VSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEE-EEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEE-EEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 3469999999999999999999999987655544333332222 222335678999999998766532210 01
Q ss_pred hcccccEEEEEEeC
Q 010548 494 ALASCDVTIFVYDR 507 (507)
Q Consensus 494 ~~~~ad~vilv~D~ 507 (507)
..+.+|++++|||+
T Consensus 116 ~~~~~d~il~v~~~ 129 (270)
T 1h65_A 116 LDKTIDVLLYVDRL 129 (270)
T ss_dssp TTCEECEEEEEEES
T ss_pred hcCCCCEEEEEEeC
Confidence 23579999999874
No 347
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.91 E-value=5e-10 Score=109.47 Aligned_cols=90 Identities=19% Similarity=0.253 Sum_probs=57.5
Q ss_pred hhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc-Cc
Q 010548 74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ET 152 (507)
Q Consensus 74 ~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~ 152 (507)
.+.+..+..+|.+++|+|+.++..-.+....++...... ++|.++|.||+|+.+... ..+....+.+.|... .+
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~---~~~~~~~~~~~y~~~g~~ 152 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQD---TEDTIQAYAEDYRNIGYD 152 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHH---HHHHHHHHHHHHHHHTCC
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhh---hHHHHHHHHHHHHhCCCe
Confidence 344567899999999999997754443333355444444 799999999999976421 001123333333110 26
Q ss_pred EEEeCcccCCCchHHH
Q 010548 153 CVECSATTMIQVPDVF 168 (507)
Q Consensus 153 ~~~~SA~~g~gi~~l~ 168 (507)
++.+||+++.|+++|+
T Consensus 153 v~~~sa~~~~g~~~L~ 168 (307)
T 1t9h_A 153 VYLTSSKDQDSLADII 168 (307)
T ss_dssp EEECCHHHHTTCTTTG
T ss_pred EEEEecCCCCCHHHHH
Confidence 8999999988876543
No 348
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.88 E-value=2.9e-10 Score=117.80 Aligned_cols=84 Identities=14% Similarity=0.166 Sum_probs=54.1
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCcccee-EEEEEEcCCCeEEEEEEecCCchhhhhhc------cchhh
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY-AVNVVDQPGGNKKTLILQEIPEEGVKKIL------SNKEA 494 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------~~~~~ 494 (507)
..+||+++|+||||||||+|+|++.++..+...+++++. ....+..+ +..+.+|||+|.+.+.... ++..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG--GIPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET--TEEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC--CEEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 458999999999999999999999887666654444433 22334444 4678899999986654322 23457
Q ss_pred cccccEEEEEEeC
Q 010548 495 LASCDVTIFVYDR 507 (507)
Q Consensus 495 ~~~ad~vilv~D~ 507 (507)
++.+|++++|||+
T Consensus 301 ~~~aD~vl~VvD~ 313 (462)
T 3geh_A 301 ANTADLVLLTIDA 313 (462)
T ss_dssp CCSCSEEEEEEET
T ss_pred hhcCCEEEEEecc
Confidence 8999999999995
No 349
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.87 E-value=1.6e-09 Score=108.00 Aligned_cols=84 Identities=18% Similarity=0.166 Sum_probs=55.2
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCe---------------EEEEEEecCCchhhhh-
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN---------------KKTLILQEIPEEGVKK- 487 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 487 (507)
+||++||.||||||||+|++++........|..|.......+.+++.. ..+.+|||+|+.++.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 689999999999999999999987433222322222222234444321 4789999999977532
Q ss_pred ---hc-cchhhcccccEEEEEEeC
Q 010548 488 ---IL-SNKEALASCDVTIFVYDR 507 (507)
Q Consensus 488 ---~~-~~~~~~~~ad~vilv~D~ 507 (507)
+. ....++++||++++|+|+
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~ 106 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRC 106 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred cchHHHHHHHHHHhcCeEEEEEec
Confidence 21 113468999999999996
No 350
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.85 E-value=4.8e-09 Score=108.32 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=61.1
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCC-------------------------------CCCccceeEEEEEEcCC
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY-------------------------------APTTGEQYAVNVVDQPG 469 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~-------------------------------~~t~~~~~~~~~~~~~~ 469 (507)
...++|+++|.+|+|||||+++|++....... ....|.+.....+..
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-- 92 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-- 92 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec--
Confidence 45689999999999999999999765322111 122333333333333
Q ss_pred CeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 470 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
+..++.+|||+|+++|.... ..+++.||++++|+|+
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~--~~~~~~aD~~ilVVDa 128 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNM--IGGASQADLAVLVISA 128 (439)
T ss_pred CCeEEEEEECCChHHHHHHH--HhhHhhCCEEEEEEEC
Confidence 45689999999999998776 6788999999999996
No 351
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.85 E-value=2.5e-09 Score=107.70 Aligned_cols=88 Identities=10% Similarity=0.181 Sum_probs=48.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC-----cccC---------------CceEEEEEeCCCC
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP-----DFYP---------------DRVPVTIIDTSSS 69 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~-----~~~~---------------~~~~~~i~Dt~G~ 69 (507)
...++|+|+|.+|||||||+|+|++..+... ..+.+|+.. .+.. ....+.+|||||+
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~---~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAE---NFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC----------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccc---CCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence 4468999999999999999999998764221 111122111 1111 0235999999998
Q ss_pred ccchh-------hhHHhhccCCEEEEEEeCCChhhHHH
Q 010548 70 LENKG-------KLNEELKRADAVVLTYACNQQSTLSR 100 (507)
Q Consensus 70 ~~~~~-------~~~~~~~~ad~il~V~D~~~~~s~~~ 100 (507)
..... ....+++.+|++++|+|+++..++.+
T Consensus 97 ~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~ 134 (396)
T 2ohf_A 97 VKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH 134 (396)
T ss_dssp ----------CCHHHHHHHTSSSEEEEEEC--------
T ss_pred ccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh
Confidence 76443 34578899999999999987655544
No 352
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.84 E-value=2.9e-08 Score=100.22 Aligned_cols=85 Identities=14% Similarity=0.189 Sum_probs=55.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-C-CCCCCCC-CCeeeCCcccC------------C---ceEEEEEeCCCCcc
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESV-P-EKVPPVH-APTRLPPDFYP------------D---RVPVTIIDTSSSLE 71 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~-~-~~~~~~~-~~~t~~~~~~~------------~---~~~~~i~Dt~G~~~ 71 (507)
.+..+|+|+|++|||||||+|+|++... . .++|.+. ....-...+.. . +..+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4468999999999999999999999763 1 2233211 11110011111 1 14689999999653
Q ss_pred c-------hhhhHHhhccCCEEEEEEeCCC
Q 010548 72 N-------KGKLNEELKRADAVVLTYACNQ 94 (507)
Q Consensus 72 ~-------~~~~~~~~~~ad~il~V~D~~~ 94 (507)
. .......++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 2234567899999999999864
No 353
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.84 E-value=2.1e-09 Score=97.54 Aligned_cols=106 Identities=8% Similarity=0.014 Sum_probs=66.7
Q ss_pred CCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhH---HHHHHhc--CCCCcEEEEEecc-cCCCCCCccchhhhh
Q 010548 67 SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYW---LPELRRL--EIKVPIIVAGCKL-DLRGDHNATSLEEVM 140 (507)
Q Consensus 67 ~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~---~~~l~~~--~~~~piilv~NK~-Dl~~~~~~~~~~~~~ 140 (507)
+|+...+.+|+.|++++|++|||+|++|....+ ....+ ...+... ..+.|++|++||. |++..-.. .+..
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~---~EI~ 185 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC---FYLA 185 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCH---HHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCH---HHHH
Confidence 477888999999999999999999999885443 22213 2333332 1478999999995 77654222 2222
Q ss_pred HHHHH-HhcccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548 141 GPIMQ-QFREIETCVECSATTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 141 ~~~~~-~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~ 176 (507)
..+.. .......+..|||++|+|+.+-++||.+.+.
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 22111 1122235799999999999999999987654
No 354
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.84 E-value=2.2e-09 Score=108.15 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=51.5
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCC---------------eEEEEEEecCCchhhh
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG---------------NKKTLILQEIPEEGVK 486 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~ 486 (507)
..++|++||.||||||||+|++++.++.....|..|.......+.+++. ...+.+|||+|..+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3479999999999999999999998774444444444444555555532 2358899999987754
Q ss_pred h----hc-cchhhcccccEEEEEEeC
Q 010548 487 K----IL-SNKEALASCDVTIFVYDR 507 (507)
Q Consensus 487 ~----~~-~~~~~~~~ad~vilv~D~ 507 (507)
+ +. ....++++||++++|+|+
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~ 126 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRA 126 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEec
Confidence 3 10 115688999999999995
No 355
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.80 E-value=3.7e-09 Score=110.63 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=60.0
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCC-------------------------------CCCCccceeEEEEEEcCC
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN-------------------------------YAPTTGEQYAVNVVDQPG 469 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~-------------------------------~~~t~~~~~~~~~~~~~~ 469 (507)
...+||+++|.+|+|||||+++|++...... .....+.+.. ...+..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~--~~~~~~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSIC--TSHFST 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCC--EEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEee--eEEEec
Confidence 4569999999999999999999986521111 0111222222 222333
Q ss_pred CeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 470 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
+..++.||||+|+++|.... ..+++.||++++|||+
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~--~~~~~~aD~~llVvDa 144 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNA--IMGISQADMAILCVDC 144 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHH--HHHHTTCSEEEEEEEC
T ss_pred CCceEEEEECCCcHHHHHHH--HHhhhhCCEEEEEEEC
Confidence 56789999999999998776 6889999999999996
No 356
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.79 E-value=1.5e-09 Score=110.89 Aligned_cols=86 Identities=15% Similarity=0.136 Sum_probs=58.4
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCC-CCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhcc-----chhh
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS-----NKEA 494 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-----~~~~ 494 (507)
...+||+++|.+|+|||||+|+|++.++...+. +..+++.....+... +..++.+|||+|+..+..+.. +..+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH-PIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET-TTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC-CCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 346899999999999999999999998855443 333444445556665 334788999999987765421 2457
Q ss_pred cccccEEEEEEeC
Q 010548 495 LASCDVTIFVYDR 507 (507)
Q Consensus 495 ~~~ad~vilv~D~ 507 (507)
++++|++++|||+
T Consensus 111 l~~aD~vllVvD~ 123 (423)
T 3qq5_A 111 FYRADCGILVTDS 123 (423)
T ss_dssp HTSCSEEEEECSS
T ss_pred HhcCCEEEEEEeC
Confidence 8999999999996
No 357
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=98.78 E-value=2.7e-08 Score=87.91 Aligned_cols=138 Identities=17% Similarity=0.274 Sum_probs=106.5
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCC-CCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHH
Q 010548 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA-PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI 268 (507)
Q Consensus 190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~-~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~ 268 (507)
+.+.....++++|..+|.+.+|.++.+|+....+.+ +. .++..++..+.... ++.|+++.|+.+.....
T Consensus 19 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~l~~~~---------dg~i~~~eF~~~~~~~~ 88 (166)
T 2mys_B 19 FDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAM-GRLNVKNEELDAMIKEA---------SGPINFTVFLTMFGEKL 88 (166)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHh-CCCCCCHHHHHHHHHHC---------CCCcCHHHHHHHHHHHh
Confidence 455667889999999999999999999999988775 44 67777777666532 67899999999866432
Q ss_pred HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--
Q 010548 269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP-- 346 (507)
Q Consensus 269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p-- 346 (507)
... ...+.++.+|+.||.|++|.|+.+|+..++....
T Consensus 89 ~~~-----------------------------------------~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 127 (166)
T 2mys_B 89 KGA-----------------------------------------DPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGR 127 (166)
T ss_pred ccC-----------------------------------------CcHHHHHHHHHHhCCCCCcceeHHHHHHHHHHcCCC
Confidence 110 1235788999999999999999999999998752
Q ss_pred CCCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548 347 ESPWDEAPYKDAAETTALGNLTLKGFVSKWAL 378 (507)
Q Consensus 347 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 378 (507)
..+.....+...++.|.+|.|++++|+.++.-
T Consensus 128 ~~~~~~~~~~~~~D~d~dg~I~~~eF~~~~~~ 159 (166)
T 2mys_B 128 FTPEEIKNMWAAFPPDVAGNVDYKNICYVITH 159 (166)
T ss_pred CCHHHHHHHHHhcCCCCCCeEeHHHHHHHHHh
Confidence 22233344556678899999999999998754
No 358
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.78 E-value=9.3e-09 Score=103.32 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=53.1
Q ss_pred EE-EEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCc---------hhhhhhccchh
Q 010548 424 FR-CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE---------EGVKKILSNKE 493 (507)
Q Consensus 424 ~k-v~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------~~~~~~~~~~~ 493 (507)
++ |+++|.+|||||||+|++++..+.....+..|.+.....+.++| ..+.+|||+|. +.|.+. ..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t---l~ 253 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT---LS 253 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH---HH
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH---HH
Confidence 45 99999999999999999999886433333333344455666664 56789999996 223333 35
Q ss_pred hcccccEEEEEEeC
Q 010548 494 ALASCDVTIFVYDR 507 (507)
Q Consensus 494 ~~~~ad~vilv~D~ 507 (507)
.++.||++++|+|+
T Consensus 254 ~~~~aD~il~VvD~ 267 (364)
T 2qtf_A 254 EAKYSDALILVIDS 267 (364)
T ss_dssp GGGGSSEEEEEEET
T ss_pred HHHhCCEEEEEEEC
Confidence 68899999999995
No 359
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.77 E-value=7e-09 Score=111.22 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=61.1
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCC-------------------------------CCccceeEEEEEEcCC
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-------------------------------PTTGEQYAVNVVDQPG 469 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~-------------------------------~t~~~~~~~~~~~~~~ 469 (507)
...+||+++|.+|||||||+++|++........ +.++.+.....+..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-- 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--
Confidence 346899999999999999999999775433221 11222222222222
Q ss_pred CeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 470 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
+..++.||||+|+++|.... ..+++.||++|+|||+
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~--~~~~~~aD~~llVVDa 278 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNA--IMGISQADMAILCVDC 278 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHH--TTTSSCCSEEEEEEEC
T ss_pred CCceEEEEECCCCcccHHHH--HHHHhhcCceEEEEEC
Confidence 45688999999999988776 6789999999999996
No 360
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.77 E-value=3e-08 Score=98.73 Aligned_cols=83 Identities=19% Similarity=0.206 Sum_probs=52.3
Q ss_pred hhccCCEEEEEEeCCChh-hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc-CcEEEe
Q 010548 79 ELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ETCVEC 156 (507)
Q Consensus 79 ~~~~ad~il~V~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 156 (507)
.+.++|.+++|... ++. +...+. .++-..... ++|.+||+||+|+.+... .+....+...|... .+++.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~-r~L~~a~~~--~~~~iivlNK~DL~~~~~----~~~~~~~~~~y~~~G~~v~~~ 198 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIID-RYLVGCETL--QVEPLIVLNKIDLLDDEG----MDFVNEQMDIYRNIGYRVLMV 198 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHH-HHHHHHHHH--TCEEEEEEECGGGCCHHH----HHHHHHHHHHHHTTTCCEEEC
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHH-HHHHHHHhc--CCCEEEEEECccCCCchh----HHHHHHHHHHHHhCCCcEEEE
Confidence 36889999988665 453 333333 355444445 788999999999976311 01123333333221 268999
Q ss_pred CcccCCCchHHHH
Q 010548 157 SATTMIQVPDVFY 169 (507)
Q Consensus 157 SA~~g~gi~~l~~ 169 (507)
||+++.|++++..
T Consensus 199 Sa~~~~gl~~L~~ 211 (358)
T 2rcn_A 199 SSHTQDGLKPLEE 211 (358)
T ss_dssp BTTTTBTHHHHHH
T ss_pred ecCCCcCHHHHHH
Confidence 9999999877553
No 361
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=98.76 E-value=1.7e-08 Score=87.15 Aligned_cols=137 Identities=16% Similarity=0.187 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCC
Q 010548 193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR 272 (507)
Q Consensus 193 ~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~ 272 (507)
+..+.++++|..+|.+.+|.++.+|+....+.+ +...+..+++.+...+. + ..++.|+++.|+.++......
T Consensus 3 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~~~~~~~~~~~~~~d---~--~~~g~i~~~eF~~~~~~~~~~-- 74 (143)
T 2obh_A 3 EQKQEIREAFDLFDADGTGTIDVKELKVAMRAL-GFEPKKEEIKKMISEID---K--EGTGKMNFGDFLTVMTQKMSE-- 74 (143)
T ss_dssp HHHHHHHHHHHTTCTTCCSEEEGGGHHHHHHHT-TCCCCHHHHHHHHHHHT---T--TCCSEEEHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhC---C--CCCCeeeHHHHHHHHHHHhcc--
Confidence 446678999999999999999999999888764 66778888777765542 2 235689999999886533210
Q ss_pred ccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CCC
Q 010548 273 LETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SPW 350 (507)
Q Consensus 273 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p~ 350 (507)
....+-++..|+.||.|++|.|+.+|+..++..... .+.
T Consensus 75 ---------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~ 115 (143)
T 2obh_A 75 ---------------------------------------KDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDE 115 (143)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHH
T ss_pred ---------------------------------------ccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHH
Confidence 112356789999999999999999999999986532 223
Q ss_pred CCCccccccccCCCCccchHhHHhhh
Q 010548 351 DEAPYKDAAETTALGNLTLKGFVSKW 376 (507)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~w 376 (507)
....+...++.|.+|.|++++|+.++
T Consensus 116 ~~~~~~~~~D~d~dG~I~~~eF~~~~ 141 (143)
T 2obh_A 116 ELQEMIDEADRDGDGEVSEQEFLRIM 141 (143)
T ss_dssp HHHHHHHHHCTTSSSSBCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 33445566788999999999999865
No 362
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.75 E-value=2.2e-10 Score=115.65 Aligned_cols=145 Identities=18% Similarity=0.096 Sum_probs=83.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhh-------hHHhh-
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESV---PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK-------LNEEL- 80 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~---~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~- 80 (507)
..+|+++|.+|||||||+|+|++... .....+..+++|.......-+..+.++||||....... ....+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 241 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIIT 241 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence 35799999999999999999998610 01112223333321111111123799999997533211 11233
Q ss_pred --ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548 81 --KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (507)
Q Consensus 81 --~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (507)
+..+.++++++.........+. .++.+.. .+.|+++++||+|...... .+.....+.+.++. .+.+.++
T Consensus 242 ~~~~i~~~~~~l~~~~~~~~g~l~--~l~~l~~--~~~~~~~v~~k~d~~~~~~---~~~~~~~~~~~~g~--~l~p~~~ 312 (369)
T 3ec1_A 242 PKREIHPRVYQLNEGQTLFFGGLA--RLDYIKG--GRRSFVCYMANELTVHRTK---LEKADSLYANQLGE--LLSPPSK 312 (369)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTE--EEEEEES--SSEEEEEEECTTSCEEEEE---GGGHHHHHHHHBTT--TBCSSCG
T ss_pred cccccCceEEEEcCCceEEECCEE--EEEEccC--CCceEEEEecCCccccccc---HHHHHHHHHHhcCC--ccCCCCc
Confidence 7789999999974321111111 1112222 2689999999999875432 23445566666664 4566666
Q ss_pred ccCCCch
Q 010548 159 TTMIQVP 165 (507)
Q Consensus 159 ~~g~gi~ 165 (507)
....++.
T Consensus 313 ~~~~~~~ 319 (369)
T 3ec1_A 313 RYAAEFP 319 (369)
T ss_dssp GGTTTCC
T ss_pred hhhhhcc
Confidence 6655553
No 363
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=98.75 E-value=3.7e-08 Score=86.27 Aligned_cols=143 Identities=16% Similarity=0.191 Sum_probs=112.3
Q ss_pred hcccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548 188 QTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF 267 (507)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~ 267 (507)
..+.+.....+.++|..+|.+.+|.++.+|+...... .+..++..+++.+.+.+.. ..++.|+++.|+.+....
T Consensus 15 ~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~-----~~~g~i~~~eF~~~~~~~ 88 (161)
T 3fwb_A 15 SELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKA-LGFELPKREILDLIDEYDS-----EGRHLMKYDDFYIVMGEK 88 (161)
T ss_dssp TTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHH-TTCCCCHHHHHHHHHHHCT-----TSSSCEEHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCc-----CCCCeEeHHHHHHHHHHH
Confidence 3466778889999999999999999999999998887 4778888888877776632 236689999999987644
Q ss_pred HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548 268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE 347 (507)
Q Consensus 268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~ 347 (507)
.... ...+.++.+|+.||.|++|.|+.+|+..++.....
T Consensus 89 ~~~~-----------------------------------------~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~ 127 (161)
T 3fwb_A 89 ILKR-----------------------------------------DPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGE 127 (161)
T ss_dssp HHTC-----------------------------------------CHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC
T ss_pred HhcC-----------------------------------------CcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCC
Confidence 3221 12466889999999999999999999999986532
Q ss_pred --CCCCCCccccccccCCCCccchHhHHhhhh
Q 010548 348 --SPWDEAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 348 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
.+.....+...++.+.+|.|++++|+.++.
T Consensus 128 ~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 159 (161)
T 3fwb_A 128 TLTDEELRAMIEEFDLDGDGEINENEFIAICT 159 (161)
T ss_dssp CCCHHHHHHHHHTTCSSSSSSEEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 223334455667889999999999998764
No 364
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.74 E-value=8.8e-09 Score=104.68 Aligned_cols=83 Identities=16% Similarity=0.035 Sum_probs=45.2
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccce-eEEEE--EE-------------------cCC-CeEEEEEEecC
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ-YAVNV--VD-------------------QPG-GNKKTLILQEI 480 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~-~~~~~--~~-------------------~~~-~~~~~~i~Dt~ 480 (507)
+||+++|.||||||||+|++++.+ ..++..+++|. ..... +. +.+ ...++.+|||+
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 589999999999999999999887 43333222222 11111 11 121 13678999999
Q ss_pred Cchhh----hhhc-cchhhcccccEEEEEEeC
Q 010548 481 PEEGV----KKIL-SNKEALASCDVTIFVYDR 507 (507)
Q Consensus 481 G~~~~----~~~~-~~~~~~~~ad~vilv~D~ 507 (507)
|..+. ..+. ....+++.||++++|+|+
T Consensus 80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~ 111 (397)
T 1wxq_A 80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDA 111 (397)
T ss_dssp ---------------CCCSSTTCSEEEEEEET
T ss_pred CcccchhhhhhHHHHHHHHHhcCCEEEEEEec
Confidence 98542 2121 113567999999999996
No 365
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.73 E-value=4.6e-10 Score=117.87 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=65.5
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
..+|+++|.+|+|||||+++|.+.++...+.++.|.++....+..+ +..++.+|||+|++.|...+ ..+++.+|+++
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~--~~~~~~aD~vI 80 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMR--ARGTQVTDIVI 80 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSB--BSSSBSBSSCE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHH--HHHHccCCEEE
Confidence 4689999999999999999999888776666665554443334443 34468899999999999887 67889999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 81 LVVDa 85 (537)
T 3izy_P 81 LVVAA 85 (537)
T ss_dssp EECBS
T ss_pred EEEEC
Confidence 99996
No 366
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.72 E-value=2.7e-08 Score=96.16 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=41.7
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCC--------CCCccceeEEEEEEcCCCeEEEEEEecCCc
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY--------APTTGEQYAVNVVDQPGGNKKTLILQEIPE 482 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 482 (507)
..++|+++|.+|||||||+|++++.+..... .+|.+.......+...+...++.+|||+|.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~ 75 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGF 75 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCc
Confidence 4689999999999999999998876655443 345555555444545555568999999997
No 367
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=98.72 E-value=1.4e-08 Score=87.31 Aligned_cols=135 Identities=15% Similarity=0.259 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcC
Q 010548 192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG 271 (507)
Q Consensus 192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~ 271 (507)
++..+.++++|..+|.+.+|.++.+|+....+.+ +...+..++..+... .++.|+++.|+.+.......
T Consensus 3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~---------~~g~i~~~eF~~~~~~~~~~- 71 (143)
T 3j04_B 3 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASM-GKNPTDEYLEGMMSE---------APGPINFTMFLTMFGEKLNG- 71 (143)
T ss_dssp HHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHT-SCCCCHHHHHTTTTT---------SSSCCCHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHh-CCCCCHHHHHHHHHh---------CCCCcCHHHHHHHHHHHhcc-
Confidence 4556788999999999999999999999988774 556777666555443 46799999999886532110
Q ss_pred CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CC
Q 010548 272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SP 349 (507)
Q Consensus 272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p 349 (507)
....+.++.+|+.||.|++|.|+.+|+..++..... .+
T Consensus 72 ----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~ 111 (143)
T 3j04_B 72 ----------------------------------------TDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTD 111 (143)
T ss_dssp ----------------------------------------SCCHHHHHHHHTTSCSSSCCCCCTTTHHHHHHTSSSCCCH
T ss_pred ----------------------------------------CCcHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCH
Confidence 011367889999999999999999999999987532 22
Q ss_pred CCCCccccccccCCCCccchHhHHhhhh
Q 010548 350 WDEAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
.....+...++.|.+|.|++++|+.++.
T Consensus 112 ~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 139 (143)
T 3j04_B 112 EEVDEMYREAPIDKKGNFNYVEFTRILK 139 (143)
T ss_dssp HHHHHHHHHTTCCSSSCCCSTHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCcHHHHHHHHh
Confidence 2234455667889999999999998764
No 368
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=98.70 E-value=1.3e-08 Score=101.95 Aligned_cols=146 Identities=21% Similarity=0.322 Sum_probs=111.8
Q ss_pred CccchhcccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHH
Q 010548 183 FDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLF 262 (507)
Q Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~ 262 (507)
+.+....+.++....++++|..+|.+.+|.++.+|+..+++. ++..++..+++.+.+.+.. ..++.|+++.|+.
T Consensus 289 wePs~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrs-LG~~~TeeEI~~Lf~~~D~-----DgDG~IdFeEFl~ 362 (440)
T 3u0k_A 289 WEPTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDA-----DGDGTIDFPEFLI 362 (440)
T ss_dssp ECCBCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH-TTCCCCHHHHHHHHHHHCS-----SCSSSEEHHHHHH
T ss_pred hHhhHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHH-cCCCCCHHHHHHHHHHhCC-----CCCCcCcHHHHHH
Confidence 345666788899999999999999999999999999998876 4778889888888776632 2367899999998
Q ss_pred HHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhh
Q 010548 263 LHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLF 342 (507)
Q Consensus 263 l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f 342 (507)
+....+.. ....+-|+..|+.||.|++|.|+.+||.+++
T Consensus 363 lms~~lk~-----------------------------------------~d~eeeLreAFk~fDkDgdG~IS~eELr~vL 401 (440)
T 3u0k_A 363 MMARKMKD-----------------------------------------TDSEEEIREAFRVFDKDGNGYISAAELRHVM 401 (440)
T ss_dssp HHHTC-----------------------------------------------CHHHHHHHHHHCTTCSSEECHHHHHHHH
T ss_pred HHHHHhcC-----------------------------------------CChHHHHHHHHHHHCCCCcCcCCHHHHHHHH
Confidence 75421100 0012467889999999999999999999999
Q ss_pred ccCCC--CCCCCCccccccccCCCCccchHhHHhh
Q 010548 343 LTAPE--SPWDEAPYKDAAETTALGNLTLKGFVSK 375 (507)
Q Consensus 343 ~~~p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (507)
..... .+.....+...++.|.+|.|++++|+.+
T Consensus 402 ~~lGe~LSdeEIdeLfke~D~DgDGkIsyeEFvkm 436 (440)
T 3u0k_A 402 TNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 436 (440)
T ss_dssp HHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHH
Confidence 86422 2222334556678899999999999874
No 369
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=98.70 E-value=3.8e-08 Score=87.09 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=111.2
Q ss_pred hcccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548 188 QTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF 267 (507)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~ 267 (507)
..+.+.....+.++|..+|.+.+|.++.+|+....... +...+..++..+...+. ...++.|+++.|+.+....
T Consensus 20 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d-----~~~~g~i~~~eF~~~~~~~ 93 (169)
T 3qrx_A 20 VGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRAL-GFEPKKEEIKKMISEID-----KDGSGTIDFEEFLTMMTAK 93 (169)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHT-SCCCCHHHHHHHHHHHC-----SSSSSSEEHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhc-----CCCCCcCCHHHHHHHHHHH
Confidence 34566778899999999999999999999999888654 67788888887777662 2246789999999987643
Q ss_pred HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548 268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE 347 (507)
Q Consensus 268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~ 347 (507)
... ....+.++.+|+.+|.|++|.|+.+|+..++.....
T Consensus 94 ~~~-----------------------------------------~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~ 132 (169)
T 3qrx_A 94 MGE-----------------------------------------RDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGE 132 (169)
T ss_dssp HHH-----------------------------------------HHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTC
T ss_pred hcc-----------------------------------------cCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCC
Confidence 311 123567889999999999999999999999987532
Q ss_pred --CCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548 348 --SPWDEAPYKDAAETTALGNLTLKGFVSKWAL 378 (507)
Q Consensus 348 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 378 (507)
.+.....+...++.|.+|.|++++|+..+.-
T Consensus 133 ~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~ 165 (169)
T 3qrx_A 133 NLTEEELQEMIAEADRNDDNEIDEDEFIRIMKK 165 (169)
T ss_dssp CCCHHHHHHHHHHHCCSSSSCBCHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHh
Confidence 2222334556678899999999999997753
No 370
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.70 E-value=3.4e-08 Score=102.89 Aligned_cols=151 Identities=14% Similarity=0.095 Sum_probs=87.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh------cCCCCCC-CCCC----------------CCCeeeCCc-------------c
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAA------TESVPEK-VPPV----------------HAPTRLPPD-------------F 54 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~------~~~~~~~-~~~~----------------~~~~t~~~~-------------~ 54 (507)
+...|+|+|.+||||||++++|. +.+.... ..+. .+.+..... +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 4431000 0000 000000000 0
Q ss_pred cCCceEEEEEeCCCCccch-hhhH---Hh--hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcE-EEEEecccC
Q 010548 55 YPDRVPVTIIDTSSSLENK-GKLN---EE--LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPI-IVAGCKLDL 127 (507)
Q Consensus 55 ~~~~~~~~i~Dt~G~~~~~-~~~~---~~--~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~NK~Dl 127 (507)
...++.+.|+||||..... .... .. ...+|.+++|+|+........ ....+.. .+|+ ++|.||+|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~---~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD---KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH---HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh---hcCceEEEEeCCcc
Confidence 1156789999999976422 1111 11 237899999999987643221 2233333 2575 899999998
Q ss_pred CCCCCccchhhhhHHHHHHhcc----------------cCcEEEeCcccCCC-chHHHHHHHHH
Q 010548 128 RGDHNATSLEEVMGPIMQQFRE----------------IETCVECSATTMIQ-VPDVFYYAQKA 174 (507)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~SA~~g~g-i~~l~~~i~~~ 174 (507)
...... ...+...++. ..+.+.+|+.+|.| +.+|++.+.+.
T Consensus 253 ~~~~g~------~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGGG------ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCTH------HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchHH------HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 743221 1112222221 11335589999999 99999988765
No 371
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=98.69 E-value=5.2e-08 Score=85.39 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=111.4
Q ss_pred chhcccHHHHHHHHHHHhhccCCC-CCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHH
Q 010548 186 DEQTLKPRCVRALKRIFIICDHDM-DGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH 264 (507)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~d~~~-d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~ 264 (507)
....+.+...+.+++.|..+|.+. +|.++.+|+....+.. +...+..+++.+.+.+.. ..++.|+++.|+.+.
T Consensus 8 ~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~D~-----~~~g~i~~~eF~~~~ 81 (161)
T 1dtl_A 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRML-GQNPTPEELQEMIDEVDE-----DGSGTVDFDEFLVMM 81 (161)
T ss_dssp GGGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHCT-----TSSSSBCHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhCC-----CCCCeEcHHHHHHHH
Confidence 334456777888999999999999 9999999999988764 667788888777766532 246789999999987
Q ss_pred HHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhcc
Q 010548 265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT 344 (507)
Q Consensus 265 ~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~ 344 (507)
....... ......+-++.+|+.+|.|++|.|+.+|+..++..
T Consensus 82 ~~~~~~~--------------------------------------~~~~~~~~~~~~F~~~D~d~~G~i~~~El~~~l~~ 123 (161)
T 1dtl_A 82 VRSMKDD--------------------------------------SKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQA 123 (161)
T ss_dssp HHHHC-------------------------------------------CHHHHHHHHHHHHCTTCSSEEEHHHHGGGGTT
T ss_pred HHHhccc--------------------------------------ccchHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 6554100 01224566899999999999999999999999987
Q ss_pred CCC--CCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548 345 APE--SPWDEAPYKDAAETTALGNLTLKGFVSKWAL 378 (507)
Q Consensus 345 ~p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 378 (507)
... .+.....+...++.|.+|.|++++|+..+..
T Consensus 124 ~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~ 159 (161)
T 1dtl_A 124 TGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG 159 (161)
T ss_dssp C--CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHC
T ss_pred hCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHc
Confidence 532 2222233455567899999999999988753
No 372
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=98.68 E-value=3.6e-08 Score=86.47 Aligned_cols=139 Identities=19% Similarity=0.252 Sum_probs=103.3
Q ss_pred chhcccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHH
Q 010548 186 DEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 265 (507)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~ 265 (507)
++..+.++-.+.++++|..+|.+.+|.++..|+....+. ++...+..++..+... .++.|+++.|+.++.
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~-lg~~~~~~~~~~~~~~---------~~~~i~f~ef~~~~~ 75 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSS-LGRVPPDDELNAMLKE---------CPGQLNFTAFLTLFG 75 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHH-TTSCCCHHHHHHHHHT---------SSSCCCSHHHHHTTT
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHH-cCCCccHHHHHHHHHh---------ccCCccHHHHHHHHH
Confidence 345677888899999999999999999999999988876 5666777776655432 245699999988743
Q ss_pred HHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC
Q 010548 266 LFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA 345 (507)
Q Consensus 266 ~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~ 345 (507)
.... . ....+-|+..|+.||+|++|.|+.+||..++...
T Consensus 76 ~~~~-----------------------------------~------~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~ 114 (153)
T 3i5g_B 76 EKVS-----------------------------------G------TDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENM 114 (153)
T ss_dssp TTTT-----------------------------------T------CCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHSS
T ss_pred hhhc-----------------------------------c------cccHHHHHHHHhccccCCCCeEeHHHHHHHHHHc
Confidence 1110 0 0013578999999999999999999999999875
Q ss_pred CC--CCCCCCccccccccCCCCccchHhHHhhh
Q 010548 346 PE--SPWDEAPYKDAAETTALGNLTLKGFVSKW 376 (507)
Q Consensus 346 p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~w 376 (507)
.. .+.....+...++.| +|.|++++|+.+-
T Consensus 115 g~~ls~~ei~~~~~~~D~~-dG~I~y~EF~~~m 146 (153)
T 3i5g_B 115 GDNFSKEEIKNVWKDAPLK-NKQFNYNKMVDIK 146 (153)
T ss_dssp SSCCCHHHHHHHHTTCCEE-TTEECHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHhCCC-cCEEcHHHHHHHh
Confidence 32 222234455667778 8999999999753
No 373
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.68 E-value=3.3e-08 Score=96.53 Aligned_cols=28 Identities=36% Similarity=0.595 Sum_probs=25.8
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCC
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFS 449 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~ 449 (507)
..+||+++|++|||||||+|+|++.++.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 4579999999999999999999999885
No 374
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=98.68 E-value=2.5e-08 Score=86.79 Aligned_cols=139 Identities=20% Similarity=0.267 Sum_probs=103.7
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (507)
Q Consensus 190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~ 269 (507)
+.++....++++|..+|.+.+|.++.+|+....+.. +......++..+...+... .++.++++.|+........
T Consensus 4 lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~-~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~~ 77 (148)
T 2lmt_A 4 LTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTL-GQNPTEAELQDLIAEAENN-----NNGQLNFTEFCGIMAKQMR 77 (148)
T ss_dssp CCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHH-TCCCCHHHHHHHHHHHHTT-----STTEEEHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhc-CCCchHHHHHHHHHhcccC-----CCCcccHHHHHHHHHHHhc
Confidence 345567789999999999999999999999887665 5666777777766655432 3567999999887543221
Q ss_pred cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--C
Q 010548 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--E 347 (507)
Q Consensus 270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~ 347 (507)
.. ...+-|+..|+.||.|++|.|+.+||..++.... .
T Consensus 78 ~~-----------------------------------------~~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~ 116 (148)
T 2lmt_A 78 ET-----------------------------------------DTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKV 116 (148)
T ss_dssp TT-----------------------------------------TTHHHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCC
T ss_pred cc-----------------------------------------CcHHHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCccc
Confidence 00 1134588999999999999999999999998642 2
Q ss_pred CCCCCCccccccccCCCCccchHhHHhh
Q 010548 348 SPWDEAPYKDAAETTALGNLTLKGFVSK 375 (507)
Q Consensus 348 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (507)
.+.....+...++.|.+|.|++++|+.+
T Consensus 117 ~~~e~~~l~~~~D~d~dG~I~~~EF~~~ 144 (148)
T 2lmt_A 117 TDEEIDEMIREADFDGDGMINYEEFVWM 144 (148)
T ss_dssp CHHHHHHHHHHHCCSCCSSEEHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 2233344566678999999999999874
No 375
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=98.67 E-value=5.4e-08 Score=86.46 Aligned_cols=145 Identities=19% Similarity=0.162 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhhccCCCCCccChhhhHHHHhHhc---CCCCCHHH-HHHHH----HHHHhhccCCccCCCcchhhHHHHH
Q 010548 193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCF---NAPLQPAE-IVGVK----RVVQEKQHDGVNDLGLTLSGFLFLH 264 (507)
Q Consensus 193 ~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~---~~~l~~~~-~~~l~----~~i~~~~~~~~~~~~~~~~~f~~l~ 264 (507)
+..+.++++|..+|.+.+|.++.+|+........ +...+..+ +..+. +.+.+.+. .++.|+++.|+.+.
T Consensus 3 ~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~D---~~g~i~~~EF~~~~ 79 (174)
T 1q80_A 3 LWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVA---GGKGIDETTFINSM 79 (174)
T ss_dssp HHHHHHHHHHHHHCTTCSSEESHHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHTGGGTT---TTSCEEHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCcEeHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHhcC---CCCeEcHHHHHHHH
Confidence 4567789999999999999999999999988765 36666666 54432 11222222 57789999999987
Q ss_pred HHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhcc
Q 010548 265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT 344 (507)
Q Consensus 265 ~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~ 344 (507)
....... .......+.++.+|+.||.|++|.|+.+|+..++..
T Consensus 80 ~~~~~~~-------------------------------------~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~ 122 (174)
T 1q80_A 80 KEMVKNP-------------------------------------EAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGM 122 (174)
T ss_dssp HHHTTST-------------------------------------TCHHHHHTHHHHHHHHHCTTSSSSBCHHHHHHHHHH
T ss_pred HHHcCcc-------------------------------------cHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Confidence 6543200 011234578899999999999999999999999987
Q ss_pred CCCCCCCCCccccccccCCCCccchHhHHhhhh
Q 010548 345 APESPWDEAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 345 ~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
.+..+.....+...+++|.+|.|++++|+..+.
T Consensus 123 ~g~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~ 155 (174)
T 1q80_A 123 LGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGS 155 (174)
T ss_dssp HTCCGGGHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCCCCceEeHHHHHHHHH
Confidence 753344444455667889999999999998774
No 376
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=98.67 E-value=3.8e-08 Score=86.61 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=108.2
Q ss_pred HHHHHHHHhhccCCCCCccChhhhHHHHh---HhcCCCCCHHHHHHHH--------HHHHhhccCCccCCCcchhhHHHH
Q 010548 195 VRALKRIFIICDHDMDGALNDAELNEFQV---KCFNAPLQPAEIVGVK--------RVVQEKQHDGVNDLGLTLSGFLFL 263 (507)
Q Consensus 195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~---~~~~~~l~~~~~~~l~--------~~i~~~~~~~~~~~~~~~~~f~~l 263 (507)
.+.++++|..+|.+.+|.++.+|+..... ..++...+..++..+. ..+...-.+ .++.|+++.|+.+
T Consensus 3 ~~~l~~~F~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~f~~~D~d--~~g~i~~~ef~~~ 80 (166)
T 3akb_A 3 ERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRD--GDQRITREEFVTG 80 (166)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTT--SSSCEEHHHHHHT
T ss_pred HHHHHHHHhHHcCCCCCCcCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--CCCcCcHHHHHHH
Confidence 35688999999999999999999999865 3568888888888775 333433222 3677999999987
Q ss_pred HHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhc
Q 010548 264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL 343 (507)
Q Consensus 264 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~ 343 (507)
......... ..+...-.+.++.+|+.+|.|++|.|+.+|+..++.
T Consensus 81 ~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~F~~~D~d~~G~i~~~E~~~~l~ 125 (166)
T 3akb_A 81 AVKRLRDKP-----------------------------------DRFAEMARPFLHAALGVADTDGDGAVTVADTARALT 125 (166)
T ss_dssp HHHHHHHSH-----------------------------------HHHHHHHHHHHHHHHHHHCSSSSSCCBHHHHHHHHH
T ss_pred HHHHhccCc-----------------------------------cchHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence 665432110 011122245689999999999999999999999998
Q ss_pred cCCCCCCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548 344 TAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALM 379 (507)
Q Consensus 344 ~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 379 (507)
.....+.....+...++.|.+|.|++++|+..+.-+
T Consensus 126 ~~~~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~ 161 (166)
T 3akb_A 126 AFGVPEDLARQAAAALDTDGDGKVGETEIVPAFARY 161 (166)
T ss_dssp HTTCCHHHHHHHHHHHCTTCSSBCCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 765222223345556788999999999999877543
No 377
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.67 E-value=3.2e-08 Score=102.08 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=58.2
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCC------------CCC---------------------ccceeEEEEEEc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY------------APT---------------------TGEQYAVNVVDQ 467 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~------------~~t---------------------~~~~~~~~~~~~ 467 (507)
+..+||+++|.+|+|||||+++|++....... ..+ .+.+.... ..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~--~~ 99 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR--YF 99 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE--EE
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeee--Ee
Confidence 34689999999999999999999876521111 011 11111111 22
Q ss_pred CCCeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548 468 PGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 468 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
..+..++.+|||+|+++|.... ..+++.+|++++|||+
T Consensus 100 ~~~~~~~~iiDtpGh~~f~~~~--~~~~~~aD~~ilVvDa 137 (434)
T 1zun_B 100 STAKRKFIIADTPGHEQYTRNM--ATGASTCDLAIILVDA 137 (434)
T ss_dssp ECSSEEEEEEECCCSGGGHHHH--HHHHTTCSEEEEEEET
T ss_pred ecCCceEEEEECCChHHHHHHH--HHHHhhCCEEEEEEEC
Confidence 2245678999999999988766 5788999999999996
No 378
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.66 E-value=2e-08 Score=102.71 Aligned_cols=85 Identities=13% Similarity=0.074 Sum_probs=57.7
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccce---------------eEEEEEEc---CCCeEEEEEEecCCc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ---------------YAVNVVDQ---PGGNKKTLILQEIPE 482 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~---------------~~~~~~~~---~~~~~~~~i~Dt~G~ 482 (507)
...+||+++|.+|+|||||+++|++............+. ........ .....++.+|||+|+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 456899999999999999999999865432111000000 00000000 012267889999999
Q ss_pred hhhhhhccchhhcccccEEEEEEeC
Q 010548 483 EGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 483 ~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
++|.... ..+++.+|++++|+|+
T Consensus 86 ~~~~~~~--~~~~~~~D~~ilVvda 108 (403)
T 3sjy_A 86 EVLMATM--LSGAALMDGAILVVAA 108 (403)
T ss_dssp GGGHHHH--HHHHTTCSEEEEEEET
T ss_pred HHHHHHH--HHHHhhCCEEEEEEEC
Confidence 9988776 6788999999999996
No 379
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.65 E-value=1.8e-08 Score=99.29 Aligned_cols=27 Identities=30% Similarity=0.614 Sum_probs=24.9
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCC
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPF 448 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~ 448 (507)
...+|+|+|.+|||||||+|++++..+
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 346999999999999999999999987
No 380
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.65 E-value=1.8e-08 Score=92.94 Aligned_cols=82 Identities=20% Similarity=0.195 Sum_probs=48.7
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCch----------hhhhhcc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE----------GVKKILS 490 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 490 (507)
....+|+++|++|||||||+|++++..+...+.++.|+......+...+ .+.+|||+|.. ++....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~- 99 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL- 99 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH-
Confidence 3457999999999999999999998875444344444333233333332 46789999973 222222
Q ss_pred chhhc---ccccEEEEEEeC
Q 010548 491 NKEAL---ASCDVTIFVYDR 507 (507)
Q Consensus 491 ~~~~~---~~ad~vilv~D~ 507 (507)
..++ +.++++++|+|+
T Consensus 100 -~~~~~~~~~~~~~~~v~d~ 118 (210)
T 1pui_A 100 -GEYLEKRQSLQGLVVLMDI 118 (210)
T ss_dssp -HHHHHHCTTEEEEEEEEET
T ss_pred -HHHHHhhhcccEEEEEEEC
Confidence 2333 578999999985
No 381
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.65 E-value=3.3e-08 Score=94.06 Aligned_cols=109 Identities=7% Similarity=-0.007 Sum_probs=72.0
Q ss_pred CCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHH--hHHHHHHhc--CCCCcEEEEEec-ccCCCCCCccchhhhh
Q 010548 66 TSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSS--YWLPELRRL--EIKVPIIVAGCK-LDLRGDHNATSLEEVM 140 (507)
Q Consensus 66 t~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~--~~~~~l~~~--~~~~piilv~NK-~Dl~~~~~~~~~~~~~ 140 (507)
.+|+...+.+++.|++++|++|||+|++|++.++...+ .+...+... ..+.|++|.+|| .|++..-.. .+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~---~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC---FYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCH---HHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCH---HHHH
Confidence 46788889999999999999999999999865432221 122333221 247999999997 588654322 2222
Q ss_pred HHHHH-HhcccCcEEEeCcccCCCchHHHHHHHHHHcC
Q 010548 141 GPIMQ-QFREIETCVECSATTMIQVPDVFYYAQKAVLH 177 (507)
Q Consensus 141 ~~~~~-~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~ 177 (507)
+.+.. .......+..|||.+|+|+.+-++||.+.+..
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 21111 11222357999999999999999999987643
No 382
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=98.65 E-value=6.6e-08 Score=86.01 Aligned_cols=151 Identities=21% Similarity=0.242 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhhccCCCCCccChhhhHHH---HhHhcCCCCCHHHHHHHH--------HHHHhhccCCccCCCcchhhH
Q 010548 192 PRCVRALKRIFIICDHDMDGALNDAELNEF---QVKCFNAPLQPAEIVGVK--------RVVQEKQHDGVNDLGLTLSGF 260 (507)
Q Consensus 192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~---~~~~~~~~l~~~~~~~l~--------~~i~~~~~~~~~~~~~~~~~f 260 (507)
++..+.++++|..+|.+.+|.++.+|+... ..+.++...+..++..+. ..+...-. ..++.|+++.|
T Consensus 3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~lf~~~D~--d~dg~i~~~Ef 80 (176)
T 1nya_A 3 AIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGV--GSDGSLTEEQF 80 (176)
T ss_dssp SHHHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTS--CTTCCBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhCC--CCCCeEcHHHH
Confidence 345677899999999999999999999986 344578888888888665 33333322 23678999999
Q ss_pred HHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHh
Q 010548 261 LFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELED 340 (507)
Q Consensus 261 ~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~ 340 (507)
+.+..........+ .+.....+.++.+|+.+|.|++|.|+.+|+..
T Consensus 81 ~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~ 126 (176)
T 1nya_A 81 IRVTENLIFEQGEA----------------------------------SFNRVLGPVVKGIVGMCDKNADGQINADEFAA 126 (176)
T ss_dssp HHHHHHHHSSSCHH----------------------------------HHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHH
T ss_pred HHHHHHHhcCCchh----------------------------------hHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHH
Confidence 99876543211000 01122356789999999999999999999999
Q ss_pred hhccCCCCCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548 341 LFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWAL 378 (507)
Q Consensus 341 ~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 378 (507)
++......+.....+...++.|.+|.|++++|+..+..
T Consensus 127 ~l~~~g~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~ 164 (176)
T 1nya_A 127 WLTALGMSKAEAAEAFNQVDTNGNGELSLDELLTAVRD 164 (176)
T ss_dssp HHHHTTCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHSC
T ss_pred HHHHhCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 99876511112233455678899999999999987654
No 383
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=98.65 E-value=1.6e-07 Score=82.77 Aligned_cols=141 Identities=19% Similarity=0.232 Sum_probs=104.4
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (507)
Q Consensus 190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~ 269 (507)
..+.....+.++|..+|.+.+|.++.+|+...... ++..++..++..+.+.+.. ..++.|+++.|+.+......
T Consensus 21 l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~-----~~~g~i~~~ef~~~~~~~~~ 94 (166)
T 2aao_A 21 LSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKR-VGANLKESEILDLMQAADV-----DNSGTIDYKEFIAATLHLNK 94 (166)
T ss_dssp SCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGG-GTCCCCHHHHHHHHHHHCT-----TCCSSBCHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH-hCCCCCHHHHHHHHHHhCC-----CCCCeEcHHHHHHHHHHHhh
Confidence 34556778899999999999999999999998887 4677788777777666532 23668999999987431100
Q ss_pred cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC
Q 010548 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP 349 (507)
Q Consensus 270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p 349 (507)
....+.++.+|+.+|.|++|.|+.+|+..++...+..+
T Consensus 95 ------------------------------------------~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~ 132 (166)
T 2aao_A 95 ------------------------------------------IEREDHLFAAFTYFDKDGSGYITPDELQQACEEFGVED 132 (166)
T ss_dssp ------------------------------------------HHTTHHHHHHHHHHCTTCSSSBCHHHHHHHTCC-----
T ss_pred ------------------------------------------cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCH
Confidence 01124688999999999999999999999998765545
Q ss_pred CCCCccccccccCCCCccchHhHHhhhhh
Q 010548 350 WDEAPYKDAAETTALGNLTLKGFVSKWAL 378 (507)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 378 (507)
.....+...++.|.+|.|++++|+..+.-
T Consensus 133 ~~~~~~~~~~d~~~dg~i~~~eF~~~~~~ 161 (166)
T 2aao_A 133 VRIEELMRDVDQDNDGRIDYNEFVAMMQK 161 (166)
T ss_dssp ---CCHHHHHCTTCSSSBCHHHHHHHHC-
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence 55555666778899999999999987654
No 384
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.64 E-value=1.5e-08 Score=100.80 Aligned_cols=83 Identities=14% Similarity=-0.007 Sum_probs=56.3
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchh----hhhhcc-chhhcccc
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKILS-NKEALASC 498 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----~~~~~~-~~~~~~~a 498 (507)
.+|+++|.||||||||++++++.+......+..+.......+.+. +...+.+|||+|... +..+.. ....++++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~-~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeC-CCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 478999999999999999999887544333333333334455665 346789999999643 222220 02334569
Q ss_pred cEEEEEEeC
Q 010548 499 DVTIFVYDR 507 (507)
Q Consensus 499 d~vilv~D~ 507 (507)
+++++|||+
T Consensus 238 d~ll~VvD~ 246 (342)
T 1lnz_A 238 RVIVHVIDM 246 (342)
T ss_dssp CEEEEEEES
T ss_pred cEEEEEEEC
Confidence 999999996
No 385
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=98.64 E-value=6.8e-08 Score=83.61 Aligned_cols=145 Identities=17% Similarity=0.225 Sum_probs=109.5
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (507)
Q Consensus 190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~ 269 (507)
+.+...+.+.++|..+|.+.+|.++.+|+....... +..++..++..+...+... .++.|+++.|+.+......
T Consensus 5 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-~~~~~~~~~~~l~~~~d~~-----~~g~i~~~eF~~~~~~~~~ 78 (153)
T 3ox6_A 5 LRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTM-GYMPTEMELIELSQQINMN-----LGGHVDFDDFVELMGPKLL 78 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHTT-----STTCCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCC-----CCccCcHHHHHHHHHHHhh
Confidence 456667889999999999999999999999888764 6678888888877776432 3678999999998754331
Q ss_pred cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC
Q 010548 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP 349 (507)
Q Consensus 270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p 349 (507)
... ......+.++.+|+.+|.|++|.|+.+|+..++...-+.+
T Consensus 79 ~~~-------------------------------------~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~ 121 (153)
T 3ox6_A 79 AET-------------------------------------ADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQ 121 (153)
T ss_dssp TCC-------------------------------------HHHHCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSC
T ss_pred ccc-------------------------------------cccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCC
Confidence 111 0112256788999999999999999999999998622222
Q ss_pred CC---CCccccccccCCCCccchHhHHhhhh
Q 010548 350 WD---EAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 350 ~~---~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
.. ...+...++.+.+|.|++++|+..+.
T Consensus 122 ~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 152 (153)
T 3ox6_A 122 VGHRDIEEIIRDVDLNGDGRVDFEEFVRMMS 152 (153)
T ss_dssp CCHHHHHHHHHHHCSSSSSSBCHHHHHHHTC
T ss_pred CCHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence 22 33345567789999999999998653
No 386
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.63 E-value=2.2e-08 Score=103.41 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=57.2
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcC--CCCCCC-----------------------------CCCccceeEEEEEEcCCC
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLER--PFSENY-----------------------------APTTGEQYAVNVVDQPGG 470 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~--~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~ 470 (507)
..+||+++|.+|+|||||+++|++. .+...+ ....+.+.....+. ..
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~--~~ 82 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE--TK 82 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE--CS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe--cC
Confidence 4689999999999999999999864 332110 11222222222222 34
Q ss_pred eEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548 471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 471 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
..++.+|||+|+++|.... ..+++.+|++++|||+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~--~~~~~~aD~~ilVvDa 117 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNM--ITGASQADAAILVVSA 117 (435)
T ss_dssp SCEEEECCCSSSTTHHHHH--HHTSSCCSEEEEEEEC
T ss_pred CeEEEEEECCCcHHHHHHH--HhhhhhcCEEEEEEEC
Confidence 5679999999999998776 6789999999999996
No 387
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=98.63 E-value=4.7e-08 Score=83.83 Aligned_cols=137 Identities=18% Similarity=0.312 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCC
Q 010548 193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR 272 (507)
Q Consensus 193 ~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~ 272 (507)
+..+.++++|..+|.+.+|.++.+|+....+.+ +..++..+++.+.+.+.. ..++.|+++.|+.+........
T Consensus 3 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-~~~~~~~~~~~l~~~~d~-----~~~g~i~~~eF~~~~~~~~~~~- 75 (142)
T 2bl0_C 3 DQVSEFKEAFELFDSERTGFITKEGLQTVLKQF-GVRVEPAAFNEMFNEADA-----TGNGKIQFPEFLSMMGRRMKQT- 75 (142)
T ss_dssp HHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH-TCCCCHHHHHHHHHHHCT-----TCSSEEEHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCc-----CCCCeeeHHHHHHHHHHHhcCC-
Confidence 345678999999999999999999999988764 677888887777666532 2356899999999876532110
Q ss_pred ccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CCC
Q 010548 273 LETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SPW 350 (507)
Q Consensus 273 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p~ 350 (507)
...+.++.+|+.+|.|++|.|+.+|+..++..... .+.
T Consensus 76 ----------------------------------------~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~ 115 (142)
T 2bl0_C 76 ----------------------------------------TSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPH 115 (142)
T ss_dssp ----------------------------------------CCHHHHHHHHHHTCCSSCSCEEHHHHHHHHHHSSSCCCHH
T ss_pred ----------------------------------------ChHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHH
Confidence 12456889999999999999999999999986532 222
Q ss_pred CCCccccccccCCCCccchHhHHhhhh
Q 010548 351 DEAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
....+...++ +.+|.|++++|+.++.
T Consensus 116 ~~~~~~~~~d-~~dg~i~~~eF~~~~~ 141 (142)
T 2bl0_C 116 EFAEFLGITE-TEKGQIRYDNFINTMF 141 (142)
T ss_dssp HHHHHHHHHC-CSSSEECSHHHHTTTC
T ss_pred HHHHHHHHhC-CCCCcEeHHHHHHHHc
Confidence 2333455567 9999999999998763
No 388
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.63 E-value=1.7e-08 Score=103.20 Aligned_cols=83 Identities=13% Similarity=0.048 Sum_probs=59.4
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcC--------CCCCC--C-------CCCccceeEEEEEEcCCCeEEEEEEecCCch
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLER--------PFSEN--Y-------APTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~--------~~~~~--~-------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 483 (507)
+..+||+++|.+|+|||||+++|++. .+... . ....+... ....+..+..++.+|||+|++
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT--AHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSC--EEEEEECSSCEEEEEECCCSG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEe--eeeEeccCCeEEEEEECCChH
Confidence 35689999999999999999999973 22110 0 01122222 223333356788999999999
Q ss_pred hhhhhccchhhcccccEEEEEEeC
Q 010548 484 GVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 484 ~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
+|.... ..+++.+|++++|+|+
T Consensus 87 ~f~~~~--~~~~~~aD~~ilVvda 108 (405)
T 2c78_A 87 DYIKNM--ITGAAQMDGAILVVSA 108 (405)
T ss_dssp GGHHHH--HHHHTTCSSEEEEEET
T ss_pred HHHHHH--HHHHHHCCEEEEEEEC
Confidence 987666 6788999999999996
No 389
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=98.63 E-value=2.5e-07 Score=82.78 Aligned_cols=153 Identities=13% Similarity=0.139 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhhc-cCCCCCccChhhhHHHHhHhc---CCCCCHHHHHHHHHH--------HHhhccCCccCCCcchhh
Q 010548 192 PRCVRALKRIFIIC-DHDMDGALNDAELNEFQVKCF---NAPLQPAEIVGVKRV--------VQEKQHDGVNDLGLTLSG 259 (507)
Q Consensus 192 ~~~~~~l~~~~~~~-d~~~d~~l~~~el~~~~~~~~---~~~l~~~~~~~l~~~--------i~~~~~~~~~~~~~~~~~ 259 (507)
+...+.++++|..+ |.+.+|.++.+|+........ +...+..+++.+... +..... ..++.|+++.
T Consensus 4 ~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~--d~dG~I~~~E 81 (185)
T 2sas_A 4 DFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADI--NKDDVVSWEE 81 (185)
T ss_dssp HHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCT--TCSSCEEHHH
T ss_pred HHHHHHHHHHHHHheeCCCCCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCC--CCCCeEcHHH
Confidence 45567889999999 999999999999998887754 256777778777533 333322 2367899999
Q ss_pred HHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHH
Q 010548 260 FLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELE 339 (507)
Q Consensus 260 f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~ 339 (507)
|+.+.......... | ........+.++.+|+.+|.|+||.|+.+|+.
T Consensus 82 f~~~~~~~~~~~~~-----------------------~----------~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~ 128 (185)
T 2sas_A 82 YLAMWEKTIATCKS-----------------------V----------ADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQ 128 (185)
T ss_dssp HHHHHHHHHHTCCS-----------------------G----------GGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHH
T ss_pred HHHHHHHHhccccc-----------------------h----------hhhhHHHHHHHHHHHHHHcCCCCCeEcHHHHH
Confidence 99987765432100 0 00112234779999999999999999999999
Q ss_pred hhhccCCCCCCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548 340 DLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALM 379 (507)
Q Consensus 340 ~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 379 (507)
.++......+.....+...++.|.+|.|++++|+..+...
T Consensus 129 ~~l~~~g~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~~~ 168 (185)
T 2sas_A 129 NYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELYYRL 168 (185)
T ss_dssp HHTTSSCCCCSSHHHHHHHHHTTTTSCCSHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH
Confidence 9998765333444455666788999999999999877543
No 390
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=98.63 E-value=9.3e-08 Score=82.81 Aligned_cols=139 Identities=21% Similarity=0.279 Sum_probs=104.1
Q ss_pred cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHc
Q 010548 191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK 270 (507)
Q Consensus 191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~ 270 (507)
.++..+.++++|..+|.+.+|.++.+|+....+.. +...+..++..+...+.. ..++.|+++.|+.+.......
T Consensus 5 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~l~~~~d~-----~~~g~i~~~eF~~~~~~~~~~ 78 (148)
T 1exr_A 5 TEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVDA-----DGNGTIDFPEFLSLMARKMKE 78 (148)
T ss_dssp CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH-TCCCCHHHHHHHHHHHCT-----TCSSSEEHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHHCC-----CCCCcCcHHHHHHHHHhcccC
Confidence 45566778999999999999999999999888765 566777777766655422 235689999999886533210
Q ss_pred CCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--C
Q 010548 271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--S 348 (507)
Q Consensus 271 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~ 348 (507)
....+-++..|+.||.|++|.|+.+|+..++..... .
T Consensus 79 -----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~ 117 (148)
T 1exr_A 79 -----------------------------------------QDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLT 117 (148)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTCCCC
T ss_pred -----------------------------------------CCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCC
Confidence 122356788999999999999999999999987532 1
Q ss_pred CCCCCccccccccCCCCccchHhHHhhh
Q 010548 349 PWDEAPYKDAAETTALGNLTLKGFVSKW 376 (507)
Q Consensus 349 p~~~~~~~~~~~~~~~~~~~~~~~~~~w 376 (507)
+.....+...++.|.+|.|++++|+.++
T Consensus 118 ~~~~~~~~~~~d~d~dg~i~~~eF~~~~ 145 (148)
T 1exr_A 118 DDEVDEMIREADIDGDGHINYEEFVRMM 145 (148)
T ss_dssp HHHHHHHHHHHCSSSSSSBCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 2223334555678999999999999865
No 391
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.63 E-value=3.8e-08 Score=102.76 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=57.7
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCC-------CCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchh
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERP-------FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKE 493 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 493 (507)
.+.++|+++|.+++|||||+++|++.. ......+..|.+.....+.++ ...+.+|||+|+++|.... ..
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~--~~ 92 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAV--VS 92 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHH--HH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHH--HH
Confidence 356899999999999999999999876 222222223322222233333 4688999999999987666 67
Q ss_pred hcccccEEEEEEeC
Q 010548 494 ALASCDVTIFVYDR 507 (507)
Q Consensus 494 ~~~~ad~vilv~D~ 507 (507)
+++.+|++++|+|+
T Consensus 93 ~~~~aD~~ilVvda 106 (482)
T 1wb1_A 93 AADIIDLALIVVDA 106 (482)
T ss_dssp HTTSCCEEEEEEET
T ss_pred HHhhCCEEEEEEec
Confidence 88999999999996
No 392
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.62 E-value=3e-10 Score=114.48 Aligned_cols=143 Identities=16% Similarity=0.047 Sum_probs=79.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCC----CCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhh----hH----Hh
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPE----KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK----LN----EE 79 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~----~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~----~~----~~ 79 (507)
..+|+++|.+|||||||+|+|++..... ...+..+++|.......-...+.++||||......+ .. ..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 239 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLI 239 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHh
Confidence 3589999999999999999999863211 112233444422111111123899999997543211 11 11
Q ss_pred --hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548 80 --LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (507)
Q Consensus 80 --~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (507)
.+..+.++++++.........+. .++.+.. .+.|+++++||+|...... .+.....+.+.++. .+.+.+
T Consensus 240 ~~~~~i~~~~~~l~~~~~~~~g~l~--~~d~l~~--~~~~~~~v~nk~d~~~~~~---~~~~~~~~~~~~g~--~l~p~~ 310 (368)
T 3h2y_A 240 TPTKEIKPMVFQLNEEQTLFFSGLA--RFDYVSG--GRRAFTCHFSNRLTIHRTK---LEKADELYKNHAGD--LLSPPT 310 (368)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTE--EEEEEES--SSEEEEEEECTTSCEEEEE---HHHHHHHHHHHBTT--TBCSSC
T ss_pred ccccccCceEEEEcCCCEEEEcceE--EEEEecC--CCceEEEEecCcccccccc---HHHHHHHHHHHhCC--ccCCCc
Confidence 36788899999874321111111 1112222 2689999999999875432 34445556666664 345555
Q ss_pred cccCCC
Q 010548 158 ATTMIQ 163 (507)
Q Consensus 158 A~~g~g 163 (507)
+....+
T Consensus 311 ~~~~~~ 316 (368)
T 3h2y_A 311 PEELEN 316 (368)
T ss_dssp HHHHHT
T ss_pred hhhHhh
Confidence 544333
No 393
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=98.62 E-value=1.9e-07 Score=80.45 Aligned_cols=143 Identities=15% Similarity=0.212 Sum_probs=105.7
Q ss_pred cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHc
Q 010548 191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK 270 (507)
Q Consensus 191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~ 270 (507)
.+...+.++++|..+|.+.+|.++.+|+....... +...+..++..+.+.+.....+ . +.|+++.|+.+.......
T Consensus 3 ~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~-~~~~~~~~~~~l~~~~~~~d~~--~-g~i~~~eF~~~~~~~~~~ 78 (149)
T 2mys_C 3 SKAAADDFKEAFLLFDRTGDAKITASQVGDIARAL-GQNPTNAEINKILGNPSKEEMN--A-AAITFEEFLPMLQAAANN 78 (149)
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhhhcccc--C-CcCcHHHHHHHHHHHhcc
Confidence 34556778999999999999999999999887764 6677788888777766211222 2 789999999986643200
Q ss_pred CCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCC--
Q 010548 271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES-- 348 (507)
Q Consensus 271 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~-- 348 (507)
. .+...+-++.+|+.||.|++|.|+.+|+..++......
T Consensus 79 ~---------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~ 119 (149)
T 2mys_C 79 K---------------------------------------DQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMT 119 (149)
T ss_pred C---------------------------------------CcchHHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCCCCC
Confidence 0 01234668899999999999999999999999875321
Q ss_pred CCCCCccccccccCCCCccchHhHHhhhh
Q 010548 349 PWDEAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 349 p~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
+.....+... +.+.+|.|++++|+..+.
T Consensus 120 ~~~~~~~~~~-d~~~dg~i~~~eF~~~~~ 147 (149)
T 2mys_C 120 EEEVEELMKG-QEDSNGCINYEAFVKHIM 147 (149)
T ss_pred HHHHHHHHhh-CCCCCCcEeHHHHHHHHh
Confidence 2222334445 789999999999998764
No 394
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.61 E-value=6.3e-08 Score=97.09 Aligned_cols=84 Identities=17% Similarity=0.071 Sum_probs=58.9
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh-----hccchhhcc
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----ILSNKEALA 496 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----~~~~~~~~~ 496 (507)
...+|++||.||||||||+|++++.+......|..|.+.....+.+. ..+++++||+|.-+-.+ .......++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~--~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK--GAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEET--TEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeC--CcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 34799999999999999999999987444444444444444555554 56788999999632110 011245678
Q ss_pred cccEEEEEEeC
Q 010548 497 SCDVTIFVYDR 507 (507)
Q Consensus 497 ~ad~vilv~D~ 507 (507)
.||++++|+|+
T Consensus 149 ~ad~il~vvD~ 159 (376)
T 4a9a_A 149 TCNLLFIILDV 159 (376)
T ss_dssp HCSEEEEEEET
T ss_pred hcCcccccccc
Confidence 99999999996
No 395
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.61 E-value=2.7e-08 Score=99.79 Aligned_cols=84 Identities=14% Similarity=0.038 Sum_probs=54.6
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCC-------------------CeEEEEEEecCCchh
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-------------------GNKKTLILQEIPEEG 484 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-------------------~~~~~~i~Dt~G~~~ 484 (507)
++|++||.||||||||+|++++........+..|....+..+.+++ ....+.+|||+|..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999998753222222222222222233321 134688999999876
Q ss_pred hhh----hc-cchhhcccccEEEEEEeC
Q 010548 485 VKK----IL-SNKEALASCDVTIFVYDR 507 (507)
Q Consensus 485 ~~~----~~-~~~~~~~~ad~vilv~D~ 507 (507)
..+ +. ....+++.||++++|+|+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~ 109 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRC 109 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEEC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEEC
Confidence 431 11 113468999999999996
No 396
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.61 E-value=3.2e-08 Score=100.93 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=57.8
Q ss_pred eEEEEEecCCCCchHHHHHHHhcC-------CCCCC--CC-----CCccceeEEEEEEcCCCeEEEEEEecCCchhhhhh
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLER-------PFSEN--YA-----PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI 488 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~-------~~~~~--~~-----~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 488 (507)
.+||+++|.+++|||||+++|++. .+... .+ ...+.........+..+..++.+|||+|+++|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 589999999999999999999974 11100 00 01111111122333335678899999999998766
Q ss_pred ccchhhcccccEEEEEEeC
Q 010548 489 LSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 489 ~~~~~~~~~ad~vilv~D~ 507 (507)
. ..+++.+|++++|+|+
T Consensus 83 ~--~~~~~~aD~~ilVvda 99 (397)
T 1d2e_A 83 M--ITGTAPLDGCILVVAA 99 (397)
T ss_dssp H--HHTSSCCSEEEEEEET
T ss_pred H--HhhHhhCCEEEEEEEC
Confidence 5 6788999999999996
No 397
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=98.61 E-value=1.2e-07 Score=81.41 Aligned_cols=140 Identities=19% Similarity=0.313 Sum_probs=108.3
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (507)
Q Consensus 190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~ 269 (507)
+.+...+.++++|..+|.+.+|.++.+|+...... .+...+..++..+...+.. ..++.|+++.|+.+......
T Consensus 5 l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~-----~~~g~i~~~ef~~~~~~~~~ 78 (147)
T 4ds7_A 5 LTEEQIAEFKEAFALFDKDNSGSISASELATVMRS-LGLSPSEAEVADLMNEIDV-----DGNHAIEFSEFLALMSRQLK 78 (147)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHCT-----TSSSEEEHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHH-hCCCCCHHHHHHHHHHhcc-----CCCCcCcHHHHHHHHHHhcc
Confidence 45667788999999999999999999999998876 5777888888887776632 24678999999998654321
Q ss_pred cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCC-
Q 010548 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES- 348 (507)
Q Consensus 270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~- 348 (507)
.....+.+..+|+.+|.|++|.|+.+|+..++......
T Consensus 79 -----------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~ 117 (147)
T 4ds7_A 79 -----------------------------------------CNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKL 117 (147)
T ss_dssp -----------------------------------------THHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCC
T ss_pred -----------------------------------------CCCcHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCCC
Confidence 12234678899999999999999999999999875422
Q ss_pred -CCCCCccccccccCCCCccchHhHHhhhh
Q 010548 349 -PWDEAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 349 -p~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
+.....+...++ +.+|.|++++|+..+.
T Consensus 118 ~~~~~~~~~~~~d-~~dg~i~~~eF~~~l~ 146 (147)
T 4ds7_A 118 TDAEVDEMLREVS-DGSGEINIKQFAALLS 146 (147)
T ss_dssp CHHHHHHHHHHHS-SSCSSEEHHHHHHHTT
T ss_pred CHHHHHHHHHHhc-CCCCcCcHHHHHHHHh
Confidence 222233455567 9999999999998653
No 398
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=98.60 E-value=2.5e-08 Score=91.15 Aligned_cols=136 Identities=16% Similarity=0.169 Sum_probs=104.3
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (507)
Q Consensus 190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~ 269 (507)
+.+.....++++|..+|.+.+|.++.+|+......+ +..++..++..+...+ ++.|+++.|+.+....+.
T Consensus 51 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~l-g~~~~~~~~~~l~~~~---------~g~i~~~eF~~~~~~~~~ 120 (196)
T 3dtp_E 51 FTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSL-GRLCTEQELDSMVAEA---------PGPINFTMFLTIFGDRIA 120 (196)
T ss_dssp SCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTT-SCCCCHHHHHHHHTTS---------SSCCBHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHHc---------cCCCcHHHHHHHHHHHhc
Confidence 445566789999999999999999999999888764 5677777776666543 678999999988642110
Q ss_pred cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--
Q 010548 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE-- 347 (507)
Q Consensus 270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~-- 347 (507)
. ....+.++.+|+.||.|++|.|+.+||..++ ....
T Consensus 121 ~-----------------------------------------~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~g~~~ 158 (196)
T 3dtp_E 121 G-----------------------------------------TDEEDVIVNAFNLFDEGDGKCKEETLKRSLT-TWGEKF 158 (196)
T ss_dssp S-----------------------------------------SCCHHHHHHHHHTTCSSSSCCBHHHHHHHHH-HSSSCC
T ss_pred C-----------------------------------------CCcHHHHHHHHHHHCCCCCCcCcHHHHHHHH-HcCCCC
Confidence 0 0124578899999999999999999999999 5432
Q ss_pred CCCCCCccccccccCCCCccchHhHHhhhh
Q 010548 348 SPWDEAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 348 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
.+.....+...++.|.+|.|++++|+.++.
T Consensus 159 ~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~ 188 (196)
T 3dtp_E 159 SQDEVDQALSEAPIDGNGLIDIKKFAQILT 188 (196)
T ss_dssp CHHHHHHHHHSSCEETTEECHHHHHHHHHS
T ss_pred CHHHHHHHHHHcCCCCCCEEeHHHHHHHHH
Confidence 222234456667889999999999998764
No 399
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=98.60 E-value=7.8e-08 Score=83.99 Aligned_cols=136 Identities=15% Similarity=0.226 Sum_probs=103.9
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (507)
Q Consensus 190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~ 269 (507)
+.+.....++++|..+|.+.+|.++.+|+......+ +..++..++..+.. . .++.|+++.|+.+......
T Consensus 12 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~---~------~~g~i~~~eF~~~~~~~~~ 81 (156)
T 1wdc_B 12 LPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQL-GRAPDDKELTAMLK---E------APGPLNFTMFLSIFSDKLS 81 (156)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHH-SSCCCHHHHHHHHT---T------SSSCCCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHH---h------CCCcCcHHHHHHHHHHHhc
Confidence 456677889999999999999999999999988875 66777777766653 1 3679999999988664321
Q ss_pred cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--
Q 010548 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE-- 347 (507)
Q Consensus 270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~-- 347 (507)
.. ...+-++.+|+.||.|++|.|+.+|+..++.....
T Consensus 82 ~~-----------------------------------------~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~ 120 (156)
T 1wdc_B 82 GT-----------------------------------------DSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNF 120 (156)
T ss_dssp SC-----------------------------------------CCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSSSCC
T ss_pred CC-----------------------------------------ChHHHHHHHHHHHCcCCCCccCHHHHHHHHHHhCCCC
Confidence 00 01356889999999999999999999999987522
Q ss_pred CCCCCCccccccccCCCCccchHhHHhhhh
Q 010548 348 SPWDEAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 348 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
.+.....+...++.| +|.|++++|+.++.
T Consensus 121 ~~~~~~~~~~~~d~~-dg~i~~~eF~~~~~ 149 (156)
T 1wdc_B 121 NKDEMRMTFKEAPVE-GGKFDYVKFTAMIK 149 (156)
T ss_dssp CHHHHHHHHHHCCEE-TTEECHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCC-CCEEeHHHHHHHHh
Confidence 222233345556788 99999999998654
No 400
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=98.60 E-value=2.9e-08 Score=86.47 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=104.9
Q ss_pred hcccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548 188 QTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF 267 (507)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~ 267 (507)
..+.+...+.++++|..+|.+.+|.++.+|+....+.. +...+..++..+...+ ++.|+++.|+.+....
T Consensus 8 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~---------~g~i~~~eF~~~~~~~ 77 (153)
T 2ovk_B 8 VKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSL-GRVPPDDELNAMLKEC---------PGQLNFTAFLTLFGEK 77 (153)
T ss_dssp TTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTT-TSCCCHHHHHHHHHHS---------SSCCCSHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHh-CCCCCHHHHHHHHHHc---------CCCCCHHHHHHHHHHH
Confidence 34566778899999999999999999999999887764 5577888887777665 6789999999874311
Q ss_pred HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548 268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE 347 (507)
Q Consensus 268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~ 347 (507)
... ....+.++.+|+.||.|++|.|+.+|+..++.....
T Consensus 78 ~~~-----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~ 116 (153)
T 2ovk_B 78 VSG-----------------------------------------TDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGD 116 (153)
T ss_dssp TTT-----------------------------------------CCCTTHHHHHHHTTCSSCSSCCCHHHHHHHHHHSSS
T ss_pred hcc-----------------------------------------CChHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCC
Confidence 000 001246889999999999999999999999987532
Q ss_pred --CCCCCCccccccccCCCCccchHhHHhhhh
Q 010548 348 --SPWDEAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 348 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
.+.....+...++. .+|.|++++|+.++.
T Consensus 117 ~~~~~~~~~~~~~~d~-~dg~I~~~eF~~~~~ 147 (153)
T 2ovk_B 117 NFSKEEIKNVWKDAPL-KNKQFNYNKMVDIKG 147 (153)
T ss_dssp CCCHHHHHHHHHHCCE-ETTEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCC-CCCEEeHHHHHHHHh
Confidence 22223345555677 899999999998764
No 401
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.60 E-value=4.3e-08 Score=101.76 Aligned_cols=82 Identities=10% Similarity=0.153 Sum_probs=58.5
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcC--CCCCC----------------------C-------CCCccceeEEEEEEcCCC
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLER--PFSEN----------------------Y-------APTTGEQYAVNVVDQPGG 470 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~--~~~~~----------------------~-------~~t~~~~~~~~~~~~~~~ 470 (507)
..++|+++|.+|+|||||+++|++. .+... . ....+.+.....+.. +
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~--~ 83 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET--P 83 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC--S
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec--C
Confidence 4589999999999999999999864 22100 0 011222221122222 4
Q ss_pred eEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548 471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 471 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
..++.+|||+|+++|.... ..+++.+|++++|||+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~--~~~~~~aD~~ilVvda 118 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNM--ITGTSQADCAILIIAG 118 (458)
T ss_dssp SEEEEEEECCCCTTHHHHH--HHSSSCCSEEEEEEEC
T ss_pred CceEEEEECCCcHHHHHHH--HhhhhhCCEEEEEEeC
Confidence 5689999999999988776 6788999999999996
No 402
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=98.60 E-value=2.4e-07 Score=83.76 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=111.2
Q ss_pred cHHHHHHHHHHHhhc-cCCCCCccChhhhHHHHhHhc---CCCCCHHHHHHHHHHHHhhc------cCCccCCCcchhhH
Q 010548 191 KPRCVRALKRIFIIC-DHDMDGALNDAELNEFQVKCF---NAPLQPAEIVGVKRVVQEKQ------HDGVNDLGLTLSGF 260 (507)
Q Consensus 191 ~~~~~~~l~~~~~~~-d~~~d~~l~~~el~~~~~~~~---~~~l~~~~~~~l~~~i~~~~------~~~~~~~~~~~~~f 260 (507)
.+...+.++++|..+ |.+.+|.++.+|+........ +...+..+++.+.+.+.+.. -+...++.|+++.|
T Consensus 7 s~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~i~~~Ef 86 (191)
T 2ccm_A 7 SDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEW 86 (191)
T ss_dssp CHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHH
T ss_pred cHHHHHHHHHhccccccCCCCCeeeHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeECHHHH
Confidence 455677889999999 999999999999999988764 77777778877773332211 12223678999999
Q ss_pred HHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHh
Q 010548 261 LFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELED 340 (507)
Q Consensus 261 ~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~ 340 (507)
+.+.......... | ..+...-.+.+..+|+.+|.|+||.|+.+|+..
T Consensus 87 ~~~~~~~~~~~~~-----------------------~----------~~~~~~~~~~~~~~F~~~D~d~dG~I~~~E~~~ 133 (191)
T 2ccm_A 87 LKMWAECVKSVEK-----------------------G----------ESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYST 133 (191)
T ss_dssp HHHHHHHHHHHHT-----------------------T----------CCCCHHHHHHHHHHHHHHCTTCSSBCCHHHHHH
T ss_pred HHHHHHHhccccc-----------------------h----------hhchHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 9887654321000 0 012234456799999999999999999999999
Q ss_pred hhccCCCCCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548 341 LFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWAL 378 (507)
Q Consensus 341 ~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 378 (507)
++......+.....+...++.|.+|.|++++|+..+.-
T Consensus 134 ~l~~~g~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~~ 171 (191)
T 2ccm_A 134 VYMSYGIPKSDCDAAFDTLSDGGKTMVTREIFARLWTE 171 (191)
T ss_dssp HHHTTTCCHHHHHHHHHHHTTTTTSCCBHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Confidence 99766422222333455678899999999999987653
No 403
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.59 E-value=1.5e-07 Score=96.25 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=59.6
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCC---CCCCCC--CccceeEEEEEEc-------------C--CC----eEEEEE
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPF---SENYAP--TTGEQYAVNVVDQ-------------P--GG----NKKTLI 476 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~---~~~~~~--t~~~~~~~~~~~~-------------~--~~----~~~~~i 476 (507)
...++|+++|.+++|||||+++|++... .....+ |....+....+.. + +. ..++.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 4568999999999999999999996432 222233 3333343322211 1 11 267899
Q ss_pred EecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548 477 LQEIPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 477 ~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
|||+|+++|.... ...+..+|++++|+|+
T Consensus 88 iDtPGh~~f~~~~--~~~~~~~D~~ilVvda 116 (410)
T 1kk1_A 88 IDAPGHEALMTTM--LAGASLMDGAILVIAA 116 (410)
T ss_dssp EECSSHHHHHHHH--HHCGGGCSEEEEEEET
T ss_pred EECCChHHHHHHH--HhhhhhCCEEEEEEEC
Confidence 9999999987655 5667789999999996
No 404
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=98.58 E-value=7.5e-08 Score=90.13 Aligned_cols=147 Identities=13% Similarity=0.033 Sum_probs=110.2
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhcc----CCccCCCcchhhHHHHHH
Q 010548 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQH----DGVNDLGLTLSGFLFLHA 265 (507)
Q Consensus 190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~----~~~~~~~~~~~~f~~l~~ 265 (507)
..+.....++++|..+|.+.+|.++.+|+.....+.++......++..+...+-..+. +...++.|+++.|+.+..
T Consensus 45 ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~lg~~~~~~~~~~~~~~~f~~~~~~~~D~d~~G~I~~~EF~~~~~ 124 (226)
T 2lvv_A 45 KDAESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLDEFTTHLPDIVQRAFDKAKDLGNKVKGVGEEDLVEFLEFRL 124 (226)
T ss_dssp CCHHHHHHHHHHHHHHGGGSCSCBCSHHHHHHHHHTTCCTTTSSSCHHHHHHHHHHHHHHHHHHSCCCCCSCBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcCCHHHHHHHHH
Confidence 3456677889999999999999999999999887878888887788777776633220 112356899999998632
Q ss_pred HHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC
Q 010548 266 LFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA 345 (507)
Q Consensus 266 ~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~ 345 (507)
..-. ....+.++.+|+.||.|++|.|+.+|+..++...
T Consensus 125 ~~~~------------------------------------------~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~ 162 (226)
T 2lvv_A 125 MLCY------------------------------------------IYDIFELTVMFDTMDKDGSLLLELQEFKEALPKL 162 (226)
T ss_dssp HHHH------------------------------------------HHHHHHHHHHHHHHSCSSCCEECHHHHHHHHHHH
T ss_pred HHHh------------------------------------------ccCHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHH
Confidence 1110 0113578899999999999999999999999753
Q ss_pred ---CCCCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548 346 ---PESPWDEAPYKDAAETTALGNLTLKGFVSKWAL 378 (507)
Q Consensus 346 ---p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 378 (507)
...+-....+...++.|.+|.|++++|+.+...
T Consensus 163 ~~~g~~~~e~~~~~~~~D~d~dG~Is~~EF~~~~~~ 198 (226)
T 2lvv_A 163 KEWGVDITDATTVFNEIDTNGSGVVTFDEFSCWAVT 198 (226)
T ss_dssp HHHTCCCCSCHHHHHHHCCSCSSCEEHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence 333333455667788999999999999986653
No 405
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.58 E-value=3.9e-08 Score=103.62 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=56.4
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCC---------------C-----CCCccceeEEEEEEcCCCeEEEEEEecCC
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN---------------Y-----APTTGEQYAVNVVDQPGGNKKTLILQEIP 481 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~---------------~-----~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G 481 (507)
+..+|+++|.+|+|||||+++|+....... . ..+.+.........+..+..++.+|||+|
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 458999999999999999999996421110 0 00111111111112222567889999999
Q ss_pred chhhhhhccchhhcccccEEEEEEeC
Q 010548 482 EEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 482 ~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
++.|.... ..+++.+|++++|+|+
T Consensus 92 ~~df~~~~--~~~l~~aD~~IlVvDa 115 (529)
T 2h5e_A 92 HEDFSEDT--YRTLTAVDCCLMVIDA 115 (529)
T ss_dssp STTCCHHH--HHGGGGCSEEEEEEET
T ss_pred ChhHHHHH--HHHHHHCCEEEEEEeC
Confidence 99988665 6789999999999996
No 406
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=98.58 E-value=1.4e-07 Score=86.77 Aligned_cols=156 Identities=18% Similarity=0.181 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCC-CCCHHHHHHHHHHHHhhc---cCCccCCCcchhhHHHHHHHH
Q 010548 192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA-PLQPAEIVGVKRVVQEKQ---HDGVNDLGLTLSGFLFLHALF 267 (507)
Q Consensus 192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~-~l~~~~~~~l~~~i~~~~---~~~~~~~~~~~~~f~~l~~~~ 267 (507)
++..+.++++|..+|.+.+|.++.+|+......+... ..+..+++.+...+ +.+ -+...++.|+++.|+.+....
T Consensus 32 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~~~~~~~~~~l~~~~-~~lf~~~D~d~dg~i~~~EF~~~~~~~ 110 (208)
T 2hpk_A 32 PKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAV-RVFFLHKGVEPVNGLLREDWVEANRVF 110 (208)
T ss_dssp ----CHHHHHHHHHCTTCSSEECHHHHTHHHHHHHHHSCCCHHHHHHHHHHH-HHHHHHTTCBTTTBEEGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHH-HHHHHHhCCCCCCeEcHHHHHHHHHHH
Confidence 4445678899999999999999999999988875321 66778888777333 211 122236789999999986520
Q ss_pred HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548 268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE 347 (507)
Q Consensus 268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~ 347 (507)
-. +.-.|...- . | ..-.+.++.+|+.||.|++|.|+.+|+..++.....
T Consensus 111 ~~-------~~~~~~~~~------~----~--------------~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~g~ 159 (208)
T 2hpk_A 111 AE-------AERERERRG------E----P--------------SLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFDV 159 (208)
T ss_dssp HH-------HHHHHHHTT------C----C--------------CHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTS
T ss_pred hh-------hhhhhhccC------C----h--------------HHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCc
Confidence 00 000000000 0 0 112345889999999999999999999999987663
Q ss_pred CCCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548 348 SPWDEAPYKDAAETTALGNLTLKGFVSKWALM 379 (507)
Q Consensus 348 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 379 (507)
.+.....+...++.|.+|.|++++|+..+.-.
T Consensus 160 ~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~ 191 (208)
T 2hpk_A 160 PQEAAYTFFEKADTDKSGKLERTELVHLFRKF 191 (208)
T ss_dssp CTTHHHHHHHHHCTTCCSSBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 33334445566788999999999999988654
No 407
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.57 E-value=1.9e-07 Score=95.50 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=57.4
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCC---CCCCCCC--CccceeEEEEEEc-------------C--CC----eEEEEEE
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERP---FSENYAP--TTGEQYAVNVVDQ-------------P--GG----NKKTLIL 477 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~---~~~~~~~--t~~~~~~~~~~~~-------------~--~~----~~~~~i~ 477 (507)
..++|+++|..++|||||+++|++.. +.....+ |....+....+.. + +. ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 45899999999999999999999543 2223333 4433444333321 1 11 2678999
Q ss_pred ecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548 478 QEIPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 478 Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
||+|+++|.... ...+..+|++++|+|+
T Consensus 87 DtPGh~~f~~~~--~~~~~~~D~~ilVvda 114 (408)
T 1s0u_A 87 DSPGHETLMATM--LSGASLMDGAILVIAA 114 (408)
T ss_dssp ECSSHHHHHHHH--HTTCSCCSEEEEEEET
T ss_pred ECCCHHHHHHHH--HHhHhhCCEEEEEEEC
Confidence 999999987655 5667788999999996
No 408
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.57 E-value=6.9e-07 Score=90.75 Aligned_cols=159 Identities=11% Similarity=0.043 Sum_probs=88.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCC-cccCC-ceEEEEEeCCCCccchhhhHH-----hhcc
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPP-DFYPD-RVPVTIIDTSSSLENKGKLNE-----ELKR 82 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t~~~-~~~~~-~~~~~i~Dt~G~~~~~~~~~~-----~~~~ 82 (507)
...|+|+|++|||||||+|.|++...... +......++... .+... ...+.++|++|.......... .+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 34799999999999999999998542211 111111111100 11111 125789999996432222222 2344
Q ss_pred CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCC-------CCCc--cchhhhhHHHHH----Hhc-
Q 010548 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG-------DHNA--TSLEEVMGPIMQ----QFR- 148 (507)
Q Consensus 83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~-------~~~~--~~~~~~~~~~~~----~~~- 148 (507)
.+.+++ +|...+ .-+.+. +...+... ++|+++|.||.|+.- -+.. ....+.+..+.. +.+
T Consensus 149 ~~~~~~-lS~G~~-~kqrv~--la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 149 YDFFII-ISATRF-KKNDID--IAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp CSEEEE-EESSCC-CHHHHH--HHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCeEE-eCCCCc-cHHHHH--HHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 566665 776531 122222 55555555 789999999999741 0111 011122223321 111
Q ss_pred ccCcEEEeCc--ccCCCchHHHHHHHHHHc
Q 010548 149 EIETCVECSA--TTMIQVPDVFYYAQKAVL 176 (507)
Q Consensus 149 ~~~~~~~~SA--~~g~gi~~l~~~i~~~i~ 176 (507)
.....+.+|+ ..+.|++++.+.+.+.+.
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 1225789999 677789999999987763
No 409
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.57 E-value=6e-08 Score=102.75 Aligned_cols=82 Identities=16% Similarity=0.192 Sum_probs=56.6
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCC--CCCCCCccceeEEEEEEcCCC-----------------------------
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFS--ENYAPTTGEQYAVNVVDQPGG----------------------------- 470 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~----------------------------- 470 (507)
...+|+|+|.+|||||||+|++++.++. .++..+.+++.. .+..+..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~--~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV--AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE--EEECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE--EEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 4579999999999999999999999875 233333333321 1111100
Q ss_pred -e----------EEEEEEecCCchh-----------hhhhccchhhcccccEEEEEEeC
Q 010548 471 -N----------KKTLILQEIPEEG-----------VKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 471 -~----------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
. .++.+|||+|... +..+. ..+++++|++++|+|+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~--~~~l~~aD~il~VvDa 198 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVL--RWFAERVDLIILLFDA 198 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHH--HHHHHHCSEEEEEEET
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHH--HHHHHhCCEEEEEEeC
Confidence 0 2578999999864 33444 5678899999999996
No 410
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.56 E-value=1.3e-07 Score=94.91 Aligned_cols=84 Identities=17% Similarity=0.144 Sum_probs=55.8
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhh-------ccchhh
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-------LSNKEA 494 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~ 494 (507)
..++|+++|.+|||||||+|++++........+..+.......+.. +...+.+|||+|....... ......
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED--GYFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE--TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe--cCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 4589999999999999999999998754333333333333333333 3567899999998543210 000123
Q ss_pred cccccEEEEEEeC
Q 010548 495 LASCDVTIFVYDR 507 (507)
Q Consensus 495 ~~~ad~vilv~D~ 507 (507)
...+|++++|+|+
T Consensus 244 ~~~ad~illV~D~ 256 (357)
T 2e87_A 244 RYLGNLIIYIFDP 256 (357)
T ss_dssp GGTCSEEEEEECT
T ss_pred HhcCCEEEEEEeC
Confidence 4569999999995
No 411
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.56 E-value=9e-08 Score=104.28 Aligned_cols=86 Identities=20% Similarity=0.245 Sum_probs=57.5
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccce---------eEEEEEEcCCC----------------------
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ---------YAVNVVDQPGG---------------------- 470 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~---------~~~~~~~~~~~---------------------- 470 (507)
..++|+|+|.+|+|||||+|+|++.++.++...+++.. ........++.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 45899999999999999999999998776654443310 00011111100
Q ss_pred -----------------------e--EEEEEEecCCchhhhhh-ccchhhcccccEEEEEEeC
Q 010548 471 -----------------------N--KKTLILQEIPEEGVKKI-LSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 471 -----------------------~--~~~~i~Dt~G~~~~~~~-~~~~~~~~~ad~vilv~D~ 507 (507)
. ..+.+|||+|....... ..+..+++.||++++|+|+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda 210 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRA 210 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEET
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeC
Confidence 0 35789999997653211 1125788999999999995
No 412
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.56 E-value=6.6e-08 Score=98.25 Aligned_cols=113 Identities=18% Similarity=0.204 Sum_probs=63.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCee---eCCcccCCc--eEEEEEeCCCCccch-------------
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTR---LPPDFYPDR--VPVTIIDTSSSLENK------------- 73 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t---~~~~~~~~~--~~~~i~Dt~G~~~~~------------- 73 (507)
++++|+|++|+|||||+|.|++..+... .....+..+ +...+.... ..+.++|++|.....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 4599999999999999999998754321 111112211 111112222 368999999875321
Q ss_pred -hhhHHhh-------------ccC--C-EEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548 74 -GKLNEEL-------------KRA--D-AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (507)
Q Consensus 74 -~~~~~~~-------------~~a--d-~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 130 (507)
..+..++ ..+ | +++|+.|...+.+..++. ++..+. .++|+|+|.||+|....
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Die--ilk~L~---~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLV--TMKKLD---SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHH--HHHHTC---SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHH--HHHHHh---hCCCEEEEEcchhccch
Confidence 1111111 122 2 466777876665554433 555554 37999999999998754
No 413
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.55 E-value=6.2e-08 Score=87.05 Aligned_cols=137 Identities=18% Similarity=0.274 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcC
Q 010548 192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG 271 (507)
Q Consensus 192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~ 271 (507)
++-...++++|..+|.+.+|.++.+|+....+.+ +...+..++..+...+. + -.++.++++.|+.+....
T Consensus 7 ~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~l-g~~~~~~~~~~~~~~~d---~--d~~~~i~~~ef~~~~~~~---- 76 (176)
T 2lhi_A 7 EEQIAEFKEAFALFDKDNNGSISSSELATVMRSL-GLSPSEAEVNDLMNEID---V--DGNHQIEFSEFLALMSRQ---- 76 (176)
T ss_dssp TTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHH-TCCCCHHHHHHHHTTTC---S--SCSSSBCTTHHHHHHTSS----
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHc-CCChhHHHHHHHHHHhC---c--CCCccchHHHHHHHHHHh----
Confidence 3445578899999999999999999999887664 66777777766654432 2 236789999998874310
Q ss_pred CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CC
Q 010548 272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SP 349 (507)
Q Consensus 272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p 349 (507)
.......+-|+..|+.||.|++|.|+.+||..++..... .+
T Consensus 77 -------------------------------------~~~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~~~~ 119 (176)
T 2lhi_A 77 -------------------------------------LKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTD 119 (176)
T ss_dssp -------------------------------------CCSSHHHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTCCCCH
T ss_pred -------------------------------------cccCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCcccch
Confidence 001123467899999999999999999999999987532 22
Q ss_pred CCCCccccccccCCCCccchHhHHhhh
Q 010548 350 WDEAPYKDAAETTALGNLTLKGFVSKW 376 (507)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~w 376 (507)
.....+...++ |.+|.|++++|+.+.
T Consensus 120 ~ei~~l~~~~d-d~dG~I~~~EF~~~m 145 (176)
T 2lhi_A 120 AEVDDMLREVS-DGSGEINIQQFAALL 145 (176)
T ss_dssp HHHHHHHHHHH-TTSSCBCTTHHHHHH
T ss_pred HHHHHHHHhhc-CCCCeEeHHHHHHHH
Confidence 33344555566 999999999999864
No 414
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=98.55 E-value=2.6e-08 Score=87.95 Aligned_cols=139 Identities=14% Similarity=0.211 Sum_probs=100.2
Q ss_pred ccHHHHHHHHHHHhhccC--CCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548 190 LKPRCVRALKRIFIICDH--DMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF 267 (507)
Q Consensus 190 ~~~~~~~~l~~~~~~~d~--~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~ 267 (507)
+.++-...++++|..+|. +.+|.++..|+....+. +|...+..++..+.. .. ...++.|+++.|+.++...
T Consensus 3 Lt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~-lG~~~t~~el~~~~~----~d--~~~~g~i~f~eFl~~~~~~ 75 (159)
T 3i5g_C 3 LTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRC-LGMNPTEAQVHQHGG----TK--KMGEKAYKLEEILPIYEEM 75 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHH-TTCCCCHHHHHTTTC----CS--STTSCEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHH-cCCCCCHHHHHHHHc----cc--ccCCCcccHHHHHHHHHHh
Confidence 456667789999999984 78999999999998865 467778877765432 22 2236789999999986543
Q ss_pred HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548 268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE 347 (507)
Q Consensus 268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~ 347 (507)
..+.. ....+-|+..|+.||+|++|.|+.+||.+++.....
T Consensus 76 ~~~~~---------------------------------------~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~ 116 (159)
T 3i5g_C 76 SSKDT---------------------------------------GTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGE 116 (159)
T ss_dssp TTCCT---------------------------------------TCCHHHHHHHHHHHCTTSSSEECHHHHHHHHHHSSS
T ss_pred hcccc---------------------------------------cchHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhCC
Confidence 32111 112345889999999999999999999999987532
Q ss_pred --CCCCCCccccccc--cCCCCccchHhHHh
Q 010548 348 --SPWDEAPYKDAAE--TTALGNLTLKGFVS 374 (507)
Q Consensus 348 --~p~~~~~~~~~~~--~~~~~~~~~~~~~~ 374 (507)
.+.....+...++ .|.+|.|++++|+.
T Consensus 117 ~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~ 147 (159)
T 3i5g_C 117 RITEDQCNDIFTFCDIREDIDGNIKYEDLMK 147 (159)
T ss_dssp CCCHHHHHHHHHHTTCCCCSSCCEEHHHHHH
T ss_pred CCCHHHHHHHHHHhCcCCCCCCeEeHHHHHH
Confidence 2222333444445 47889999999986
No 415
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=98.54 E-value=5.2e-08 Score=85.43 Aligned_cols=144 Identities=14% Similarity=0.172 Sum_probs=106.5
Q ss_pred ccHHHHHHHHHHHhhcc--CCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548 190 LKPRCVRALKRIFIICD--HDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF 267 (507)
Q Consensus 190 ~~~~~~~~l~~~~~~~d--~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~ 267 (507)
+.++..+.++++|..+| .+.+|.++.+|+....+.+ +...+..++..+...+. . .++.|+++.|+.+....
T Consensus 3 ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~l-g~~~~~~~~~~l~~~~d----~--~~g~i~~~eF~~~~~~~ 75 (159)
T 2ovk_C 3 LTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCL-GMNPTEAQVHQHGGTKK----M--GEKAYKLEEILPIYEEM 75 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSSEEEGGGHHHHHHHT-TCCCCHHHHHHTTCCSS----T--TSCEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhc----C--CCCeEcHHHHHHHHHHH
Confidence 34566788999999999 9999999999999988754 56677777666554441 2 25889999999886422
Q ss_pred HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548 268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE 347 (507)
Q Consensus 268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~ 347 (507)
.... .....+-++..|+.||.|++|.|+.+|+..++.....
T Consensus 76 ~~~~---------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~ 116 (159)
T 2ovk_C 76 SSKD---------------------------------------TGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGE 116 (159)
T ss_dssp TTCS---------------------------------------TTCCHHHHHHHHHHTCTTSSSEECHHHHHHHHHHSSS
T ss_pred hhcc---------------------------------------CCCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCC
Confidence 1000 0112456889999999999999999999999987532
Q ss_pred --CCCCCCcccc--ccccCCCCccchHhHHhhhhhh
Q 010548 348 --SPWDEAPYKD--AAETTALGNLTLKGFVSKWALM 379 (507)
Q Consensus 348 --~p~~~~~~~~--~~~~~~~~~~~~~~~~~~w~~~ 379 (507)
.+.....+.. .++.|.+|.|++++|+.....-
T Consensus 117 ~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~ 152 (159)
T 2ovk_C 117 RITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAG 152 (159)
T ss_dssp CCCHHHHHHHHHHTTCCCCTTCCEEHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhcCCCCCCCcEeHHHHHHHHhcC
Confidence 2233344556 6788999999999999876543
No 416
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=98.54 E-value=1.6e-07 Score=87.56 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=109.1
Q ss_pred hhcccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHH
Q 010548 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL 266 (507)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~ 266 (507)
...+.++..+.+++.|..+|.+.+|.++.+|+....+.. +..++..+++.+.+.+. ...++.|+++.|+.+...
T Consensus 42 ~~~l~~~e~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~-g~~~~~~~~~~l~~~~D-----~d~dg~I~~~EF~~~~~~ 115 (220)
T 3sjs_A 42 LNTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPG-GIRLSPQTALRMMRIFD-----TDFNGHISFYEFMAMYKF 115 (220)
T ss_dssp GGGCCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHCCBGG-GBCCCHHHHHHHHHHHC-----TTCSSCBCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhC-----CCCCCcCCHHHHHHHHHH
Confidence 345667778889999999999999999999999887765 67788888888877763 224678999999998653
Q ss_pred HHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC-
Q 010548 267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA- 345 (507)
Q Consensus 267 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~- 345 (507)
. +-++.+|+.||+|++|.|+.+|+..++...
T Consensus 116 ~------------------------------------------------~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g 147 (220)
T 3sjs_A 116 M------------------------------------------------ELAYNLFVMNARARSGTLEPHEILPALQQLG 147 (220)
T ss_dssp H------------------------------------------------HHHHHHHHHHCCSSTTEECHHHHHHHHHHHT
T ss_pred H------------------------------------------------HHHHHHHHHHCCCCCCCCcHHHHHHHHHHhC
Confidence 1 347889999999999999999999999864
Q ss_pred -CCCCCCCCccccccccCCCCccchHhHHhhhhhhh
Q 010548 346 -PESPWDEAPYKDAAETTALGNLTLKGFVSKWALMT 380 (507)
Q Consensus 346 -p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 380 (507)
+..+.....+...++ |.+|.|++++|+.+...+.
T Consensus 148 ~~~~~~~~~~l~~~~d-d~dg~I~~~eF~~~~~~l~ 182 (220)
T 3sjs_A 148 FYINQRTSLLLHRLFA-RGMAFCDLNCWIAICAFAA 182 (220)
T ss_dssp CCCCHHHHHHHHHHHC---CCSEEHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHHHH
Confidence 223333444556677 9999999999999887664
No 417
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.54 E-value=2.6e-08 Score=100.12 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=36.6
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCC-CCC--------CCccceeEEEEEEcCCCeEEEEEEecCCc-------hh
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSE-NYA--------PTTGEQYAVNVVDQPGGNKKTLILQEIPE-------EG 484 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~-~~~--------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-------~~ 484 (507)
...++|+++|++|||||||++++++..... .+. ++.+.......+...+...++.+|||+|. ++
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 346899999999999999999987654332 221 23333332222333334557899999998 66
Q ss_pred hhhhc
Q 010548 485 VKKIL 489 (507)
Q Consensus 485 ~~~~~ 489 (507)
+..+.
T Consensus 115 ~~~i~ 119 (361)
T 2qag_A 115 FKTII 119 (361)
T ss_dssp -CCTH
T ss_pred HHHHH
Confidence 66554
No 418
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.53 E-value=2e-08 Score=105.66 Aligned_cols=82 Identities=13% Similarity=0.041 Sum_probs=57.4
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCC---------------CC-------CCCccceeEEEEEEcCCCeEEEEEEec
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSE---------------NY-------APTTGEQYAVNVVDQPGGNKKTLILQE 479 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~---------------~~-------~~t~~~~~~~~~~~~~~~~~~~~i~Dt 479 (507)
+..+|+|+|.+|||||||+++|+...... .. ....+.......+.. +..++.+|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY--KDYLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE--TTEEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe--CCEEEEEEEC
Confidence 35799999999999999999997221111 00 011111111222222 4678899999
Q ss_pred CCchhhhhhccchhhcccccEEEEEEeC
Q 010548 480 IPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 480 ~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
+|+++|.... ..+++.+|++++|+|+
T Consensus 90 PG~~df~~~~--~~~l~~aD~allVvDa 115 (528)
T 3tr5_A 90 PGHADFTEDT--YRTLTAVDSALMVIDA 115 (528)
T ss_dssp CCSTTCCHHH--HHGGGGCSEEEEEEET
T ss_pred CCchhHHHHH--HHHHHhCCEEEEEEeC
Confidence 9999988776 7899999999999996
No 419
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.53 E-value=1.2e-07 Score=95.28 Aligned_cols=29 Identities=28% Similarity=0.364 Sum_probs=25.5
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCC
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENY 452 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~ 452 (507)
.+|+|+|++|||||||+|++++..+....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~ 63 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCC
Confidence 49999999999999999999998874443
No 420
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=98.53 E-value=2.6e-07 Score=80.90 Aligned_cols=144 Identities=17% Similarity=0.253 Sum_probs=109.7
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (507)
Q Consensus 190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~ 269 (507)
+.++..+.+.++|..+|.+.+|.++.+|+....... +..++..++..+.+.+.. ..++.|+++.|+.+......
T Consensus 14 ls~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~-----~~~g~i~~~ef~~~~~~~~~ 87 (162)
T 1top_A 14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRML-GQNPTKEELDAIIEEVDE-----DGSGTIDFEEFLVMMVRQMK 87 (162)
T ss_dssp SCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHHT-TCCCCHHHHHHHHHHHCT-----TSCCEEEHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHcC-----CCCCcEeHHHHHHHHHHHhc
Confidence 556778889999999999999999999999988764 667788888777666532 23678999999998765432
Q ss_pred cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--
Q 010548 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE-- 347 (507)
Q Consensus 270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~-- 347 (507)
... .....+.++.+|+.+|.|++|.|+.+|+..++.....
T Consensus 88 ~~~--------------------------------------~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~ 129 (162)
T 1top_A 88 EDA--------------------------------------KGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHV 129 (162)
T ss_dssp HHH--------------------------------------HHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTCCC
T ss_pred ccc--------------------------------------ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC
Confidence 100 0124567899999999999999999999999987542
Q ss_pred CCCCCCccccccccCCCCccchHhHHhhhh
Q 010548 348 SPWDEAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 348 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
.+.....+...++.|.+|.|++++|+..+.
T Consensus 130 ~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 159 (162)
T 1top_A 130 TEEDIEDLMKDSDKNNDGRIDFDEFLKMME 159 (162)
T ss_dssp CHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 112223345566789999999999998764
No 421
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.53 E-value=1.8e-08 Score=107.68 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=44.2
Q ss_pred cCceEEEEEecCCCCchHHHHHHHhcCCCCCC-------------------------------CCCCccceeEEEEEEcC
Q 010548 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSEN-------------------------------YAPTTGEQYAVNVVDQP 468 (507)
Q Consensus 420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~-------------------------------~~~t~~~~~~~~~~~~~ 468 (507)
....++|+++|.+|+|||||+++|++...... ..+.+|.+.....+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 34578999999999999999999974321111 0112222222222222
Q ss_pred CCeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548 469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 469 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
+..++.||||+|+++|.... ..+++.||++|+|+|+
T Consensus 253 -~~~~i~iiDTPGh~~f~~~~--~~~~~~aD~alLVVDa 288 (592)
T 3mca_A 253 -DKKIYEIGDAPGHRDFISGM--IAGASSADFAVLVVDS 288 (592)
T ss_dssp -------CCEEESSSEEEEEC--CC-------CCSEEEE
T ss_pred -CCeEEEEEECCChHHHHHHH--HHHHhhCCEEEEEEEC
Confidence 35678899999999987665 6788999999999995
No 422
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.51 E-value=1.5e-08 Score=105.50 Aligned_cols=81 Identities=14% Similarity=0.163 Sum_probs=59.5
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi 502 (507)
..+|+++|.+++|||||+++|.+..+.....++.+.......+..+ ..++.+|||+|++.|...+ ..+++.+|+++
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--~~~i~~iDTPGhe~f~~~~--~~~~~~aD~aI 79 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE--NGMITFLDTPGHAAFTSMR--ARGAQATDIVV 79 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--SSCCCEECCCTTTCCTTSB--CSSSBSCSSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC--CEEEEEEECCCcHHHHHHH--HHHHhhCCEEE
Confidence 4689999999999999999999766543333333322211122333 3467889999999998877 56789999999
Q ss_pred EEEeC
Q 010548 503 FVYDR 507 (507)
Q Consensus 503 lv~D~ 507 (507)
+|||+
T Consensus 80 LVVda 84 (501)
T 1zo1_I 80 LVVAA 84 (501)
T ss_dssp EEEET
T ss_pred EEeec
Confidence 99996
No 423
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=98.50 E-value=3.1e-07 Score=83.90 Aligned_cols=150 Identities=20% Similarity=0.282 Sum_probs=109.0
Q ss_pred HHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCc
Q 010548 194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL 273 (507)
Q Consensus 194 ~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~ 273 (507)
....++++|..+|.+.+|.++.+|+......+ +..++..+++.+.+.+.. ..++.|+++.|+.+..
T Consensus 35 ~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~D~-----d~dg~i~~~ef~~~~~-------- 100 (204)
T 3e3r_A 35 GIQGLARFFRQLDRDGSRSLDADEFRQGLAKL-GLVLDQAEAEGVCRKWDR-----NGSGTLDLEEFLRALR-------- 100 (204)
T ss_dssp -----CHHHHHHCTTCCSSBCHHHHHHHHHTT-TCCCCHHHHHHHHHHHCT-----TCSSSBCHHHHHHHTS--------
T ss_pred hHHHHHHHHHHHccCCCCCcCHHHHHHHHHHc-CCCCCHHHHHHHHHHhcc-----CCCCcCcHHHHHHHHH--------
Confidence 34567889999999999999999999988765 667888888777766632 2467899999998821
Q ss_pred cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC-----C
Q 010548 274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE-----S 348 (507)
Q Consensus 274 ~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~-----~ 348 (507)
...+..-.+.++.+|+.||.|++|.|+.+|+..++..... .
T Consensus 101 ----------------------------------~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~ 146 (204)
T 3e3r_A 101 ----------------------------------PPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSG 146 (204)
T ss_dssp ----------------------------------CCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHCCCTTCHHHHTT
T ss_pred ----------------------------------hhcCchHHHHHHHHHHHhCcCCCCeEeHHHHHHHHccccCCccccC
Confidence 0112344578999999999999999999999999985421 1
Q ss_pred CCC----CCcccccccc-CCCCccchHhHHhhhhhhh-hcCHHHHHHHH
Q 010548 349 PWD----EAPYKDAAET-TALGNLTLKGFVSKWALMT-LLDPRHSLANL 391 (507)
Q Consensus 349 p~~----~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~-~~d~~~~l~~l 391 (507)
.+. ...+...++. |.+|.|++++|+..+.-+. .++.......+
T Consensus 147 ~~~~~~~~~~~~~~~D~~d~dg~Is~~EF~~~~~~~~~~~~~d~~f~~~ 195 (204)
T 3e3r_A 147 EWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGVSASMNTDEEFVAM 195 (204)
T ss_dssp SSCHHHHHHHHHHHHSCSSCCSCEEHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred CCChHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHcCccCCChHHHHHH
Confidence 111 2234455677 9999999999999998887 55444444443
No 424
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=98.50 E-value=1.5e-07 Score=80.79 Aligned_cols=131 Identities=21% Similarity=0.273 Sum_probs=101.5
Q ss_pred HHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchh
Q 010548 198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW 277 (507)
Q Consensus 198 l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w 277 (507)
++++|..+|.+.+|.++.+|+....+.. +..++..++..+.+. ..++.|+++.|+.+......
T Consensus 7 l~~~F~~~D~d~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~--------~~~g~i~~~eF~~~~~~~~~-------- 69 (145)
T 2bl0_B 7 IQECFQIFDKDNDGKVSIEELGSALRSL-GKNPTNAELNTIKGQ--------LNAKEFDLATFKTVYRKPIK-------- 69 (145)
T ss_dssp HHHHHHHHCTTCSSCEEGGGHHHHHHHT-TCCCCHHHHHHHHHH--------HTSSEECHHHHHHHHTSCCC--------
T ss_pred HHHHHHHhCCCCcCccCHHHHHHHHHHh-CCCCCHHHHHHHHHh--------cCCCeEcHHHHHHHHHHHhh--------
Confidence 8899999999999999999999988875 667778777776665 23678999999988531100
Q ss_pred HHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCC--CCCCCcc
Q 010548 278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES--PWDEAPY 355 (507)
Q Consensus 278 ~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~--p~~~~~~ 355 (507)
-.....+-++.+|+.+|.|++|.|+.+|+..++...... +.....+
T Consensus 70 --------------------------------~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~ 117 (145)
T 2bl0_B 70 --------------------------------TPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEEL 117 (145)
T ss_dssp --------------------------------CGGGGHHHHHHHHHHHCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHH
T ss_pred --------------------------------cCcccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHH
Confidence 112345678999999999999999999999999876322 2223345
Q ss_pred ccccccCCCCccchHhHHhhhh
Q 010548 356 KDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
...++.|.+|.|++++|+..+.
T Consensus 118 ~~~~d~~~dg~i~~~eF~~~~~ 139 (145)
T 2bl0_B 118 MKEVSVSGDGAINYESFVDMLV 139 (145)
T ss_dssp HTTCCCCTTSEEEHHHHHHHHH
T ss_pred HHHcCCCCCCcEeHHHHHHHHH
Confidence 5667889999999999998765
No 425
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=98.50 E-value=2.7e-08 Score=91.04 Aligned_cols=139 Identities=21% Similarity=0.229 Sum_probs=97.9
Q ss_pred cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHc
Q 010548 191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK 270 (507)
Q Consensus 191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~ 270 (507)
.+.....+.++|..+|.+.+|.++.+|+....... +..++..+++.+.+.+.. ..++.|+++.|+.+.....
T Consensus 52 ~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~-g~~~~~~~~~~l~~~~D~-----d~~g~I~~~EF~~~~~~~~-- 123 (197)
T 3pm8_A 52 CDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKI-GYQKIPPDIHQVLRDIDS-----NASGQIHYTDFLAATIDKQ-- 123 (197)
T ss_dssp CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH-C----CHHHHHHHHC------------CEEHHHHHHTTCCHH--
T ss_pred CHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCC-----CCCCeEcHHHHHHHHHHHH--
Confidence 45567789999999999999999999999998876 667777777777766632 2367899999988732111
Q ss_pred CCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC-CCC
Q 010548 271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP-ESP 349 (507)
Q Consensus 271 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p-~~p 349 (507)
.....+.++.+|+.||.|++|.|+.+|+..++.... +.+
T Consensus 124 ----------------------------------------~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~ 163 (197)
T 3pm8_A 124 ----------------------------------------TYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENP 163 (197)
T ss_dssp ----------------------------------------HHCSHHHHHHHHHHHCTTCSSEECHHHHHHHHC----CCH
T ss_pred ----------------------------------------hhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCC
Confidence 001246789999999999999999999999999762 111
Q ss_pred ---CCCCccccccccCCCCccchHhHHhhhh
Q 010548 350 ---WDEAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 350 ---~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
.....+...++.|.+|.|++++|+.++.
T Consensus 164 ~~~~~~~~l~~~~D~d~dG~Is~~EF~~~l~ 194 (197)
T 3pm8_A 164 LIDKAIDSLLQEVDLNGDGEIDFHEFMLMMS 194 (197)
T ss_dssp HHHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCCcCcHHHHHHHHH
Confidence 1123345567889999999999998764
No 426
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=98.50 E-value=5.8e-07 Score=81.54 Aligned_cols=131 Identities=19% Similarity=0.212 Sum_probs=103.0
Q ss_pred HHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCcc
Q 010548 195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLE 274 (507)
Q Consensus 195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 274 (507)
.+.++++|..+|.+.+|.++.+|+.... ...+..++..+++.+.+.+.. ..++.|+++.|+.+...
T Consensus 26 ~~~l~~~F~~~D~d~~G~I~~~El~~~l-~~~~~~~~~~~~~~l~~~~D~-----d~dG~I~~~EF~~~~~~-------- 91 (191)
T 1y1x_A 26 NQELMEWFRAVDTDGSGAISVPELNAAL-SSAGVPFSLATTEKLLHMYDK-----NHSGEITFDEFKDLHHF-------- 91 (191)
T ss_dssp TSCHHHHHHHHCTTCSSSBCHHHHHHHH-CBTTBCCCHHHHHHHHHHHCT-----TCSSSBCHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHcCCCCCcCcHHHHHHHH-HHcCCCCCHHHHHHHHHHhCC-----CCCCeEcHHHHHHHHHH--------
Confidence 3467889999999999999999999998 455667888888877766532 23678999999988542
Q ss_pred chhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCC--CCCC
Q 010548 275 TTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES--PWDE 352 (507)
Q Consensus 275 ~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~--p~~~ 352 (507)
.+-++.+|+.||.|++|.|+.+|+..++...... +...
T Consensus 92 ----------------------------------------~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~ 131 (191)
T 1y1x_A 92 ----------------------------------------ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTF 131 (191)
T ss_dssp ----------------------------------------HHHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHH
T ss_pred ----------------------------------------HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHH
Confidence 1357889999999999999999999999875321 1222
Q ss_pred CccccccccCCCCccchHhHHhhhhhh
Q 010548 353 APYKDAAETTALGNLTLKGFVSKWALM 379 (507)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~w~~~ 379 (507)
..+...++.|.+|.|++++|+.++...
T Consensus 132 ~~~~~~~D~d~dg~i~~~eF~~~~~~~ 158 (191)
T 1y1x_A 132 QALMRKFDRQRRGSLGFDDYVELSIFV 158 (191)
T ss_dssp HHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEeHHHHHHHHHHH
Confidence 334556788999999999999998764
No 427
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=98.49 E-value=7.8e-08 Score=89.50 Aligned_cols=146 Identities=13% Similarity=0.077 Sum_probs=108.4
Q ss_pred cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhcc----CCccCCCcchhhHHHHHHH
Q 010548 191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQH----DGVNDLGLTLSGFLFLHAL 266 (507)
Q Consensus 191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~----~~~~~~~~~~~~f~~l~~~ 266 (507)
.++..+.++++|..+|.+.+|.++.+|+.......++......++..+...+-+.+. ....++.|+++.|+.+...
T Consensus 43 s~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~I~~~EF~~~~~~ 122 (219)
T 3cs1_A 43 TAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLM 122 (219)
T ss_dssp SHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCGGGTCSCHHHHHHHHHHHHHHHHHHHHTSCCCSSBCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhhhhccCCCCcCCHHHHHHHHHH
Confidence 455677899999999999999999999999988877777777777766543322110 0023678999999987543
Q ss_pred HHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC-
Q 010548 267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA- 345 (507)
Q Consensus 267 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~- 345 (507)
.... ...+-++.+|+.||.|++|.|+.+|+..++...
T Consensus 123 ~~~~------------------------------------------~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g 160 (219)
T 3cs1_A 123 LCYI------------------------------------------YDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLE 160 (219)
T ss_dssp HHHH------------------------------------------HHHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHHH
T ss_pred Hhcc------------------------------------------chHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhc
Confidence 2110 123568899999999999999999999999764
Q ss_pred --CCCCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548 346 --PESPWDEAPYKDAAETTALGNLTLKGFVSKWAL 378 (507)
Q Consensus 346 --p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 378 (507)
+..+.....+...++.|.+|.|++++|+.++..
T Consensus 161 ~~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~~ 195 (219)
T 3cs1_A 161 AWGAKVEDPAALFKELDKNGTGSVTFDEFAAWASA 195 (219)
T ss_dssp HHTCCCSCHHHHHHHHCTTSSSEEEHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 334444455666678899999999999987654
No 428
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=98.49 E-value=2.3e-07 Score=81.02 Aligned_cols=145 Identities=15% Similarity=0.246 Sum_probs=107.2
Q ss_pred ccHHHHHHHHHHHhhcc-CCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHH
Q 010548 190 LKPRCVRALKRIFIICD-HDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI 268 (507)
Q Consensus 190 ~~~~~~~~l~~~~~~~d-~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~ 268 (507)
+.++....++++|..+| .+.+|.++.+|+....+.+ +..++..++..+.+.+.. ..++.|+++.|+.+.....
T Consensus 7 l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~D~-----~~~g~i~~~eF~~~~~~~~ 80 (158)
T 2jnf_A 7 LSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVL-GIQQTKSTIRQLIDEFDP-----FGNGDIDFDSFKIIGARFL 80 (158)
T ss_dssp SCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHT-TCSCSHHHHHHHHHHHCT-----TCCSEECHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCC-----CCCCcCcHHHHHHHHHHHh
Confidence 45566778999999999 9999999999999988774 667788887777766532 2367899999999876543
Q ss_pred HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCC
Q 010548 269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348 (507)
Q Consensus 269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~ 348 (507)
..... | ....+.++.+|+.||.|++|.|+.+|+..++......
T Consensus 81 ~~~~~-----------------------~--------------~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 123 (158)
T 2jnf_A 81 GEEVN-----------------------P--------------EQMQQELREAFRLYDKEGNGYISTDVMREILAELDET 123 (158)
T ss_dssp CCCCC-----------------------T--------------TTTSSTHHHHHHHHCSSSSSSEEHHHHHHHHHHHCTT
T ss_pred ccccc-----------------------h--------------hhHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCc
Confidence 11100 0 0112358899999999999999999999999865321
Q ss_pred --CCCCCccccccccCCCCccchHhHHhhhh
Q 010548 349 --PWDEAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 349 --p~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
+.....+...++.|.+|.|++++|+....
T Consensus 124 ~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 154 (158)
T 2jnf_A 124 LSSEDLDAMIDEIDADGSGTVDFEEFMGVMT 154 (158)
T ss_dssp CCHHHHHHHHHHHCSSCCSEECSHHHHHHTS
T ss_pred CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 22223345567889999999999988653
No 429
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.48 E-value=1.2e-07 Score=98.76 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=47.6
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCC--CCC----------------------CC-------CCCccceeEEEEEEcCC
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERP--FSE----------------------NY-------APTTGEQYAVNVVDQPG 469 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~--~~~----------------------~~-------~~t~~~~~~~~~~~~~~ 469 (507)
...++|+++|.+++|||||+++|+... +.. .. ....|.......+..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-- 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-- 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec--
Confidence 456899999999999999999997522 110 00 011111111112333
Q ss_pred CeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 470 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
+..++.+|||+|+++|.... ..+++.+|++|+|||+
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~--~~~~~~aD~~ilVvDa 154 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNM--INGASQADIGVLVISA 154 (467)
T ss_dssp SSEEEEECCCCC-------------TTSCSEEEEEEEC
T ss_pred CCeEEEEEECCCcHHHHHHH--HhhcccCCEEEEEEeC
Confidence 35688999999999998766 5778999999999996
No 430
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=98.48 E-value=8.8e-08 Score=82.68 Aligned_cols=139 Identities=16% Similarity=0.162 Sum_probs=99.8
Q ss_pred HHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchh
Q 010548 198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW 277 (507)
Q Consensus 198 l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w 277 (507)
++++|..+|.+.+|.++.+|+....+.. +...+..+++.+...+. +...++.|+++.|+.+........
T Consensus 6 l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~l~~~~~----D~~~~g~i~~~eF~~~~~~~~~~~------ 74 (148)
T 1m45_A 6 NKDIFTLFDKKGQGAIAKDSLGDYLRAI-GYNPTNQLVQDIINADS----SLRDASSLTLDQITGLIEVNEKEL------ 74 (148)
T ss_dssp CTTCHHHHCTTCCSEEEGGGHHHHHHHT-TCCCCHHHHHHHHHC------CC--CCEEEHHHHHHHHHHTHHHH------
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHhh----CCCCCCeEcHHHHHHHHHHHHhhc------
Confidence 4678899999999999999999888775 66777777777665441 112367899999999876441000
Q ss_pred HHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCC--CCCCCcc
Q 010548 278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES--PWDEAPY 355 (507)
Q Consensus 278 ~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~--p~~~~~~ 355 (507)
.. ......+.++.+|+.||.|++|.|+.+|+..++...... +.....+
T Consensus 75 ---~~---------------------------~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~ 124 (148)
T 1m45_A 75 ---DA---------------------------TTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDEL 124 (148)
T ss_dssp ---HG---------------------------GGCCCTHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred ---cc---------------------------cccccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 00 000113568899999999999999999999999875322 2223445
Q ss_pred ccccccCCCCccchHhHHhhhh
Q 010548 356 KDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
...++.|.+|.|++++|+..+.
T Consensus 125 ~~~~d~d~dg~i~~~eF~~~~~ 146 (148)
T 1m45_A 125 LKGVEVDSNGEIDYKKFIEDVL 146 (148)
T ss_dssp HTTCCCCTTSEEEHHHHHHHHH
T ss_pred HHHhCCCCCCeEeHHHHHHHHh
Confidence 5667889999999999998764
No 431
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=98.47 E-value=4.1e-07 Score=80.85 Aligned_cols=132 Identities=18% Similarity=0.273 Sum_probs=103.7
Q ss_pred HHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCcc
Q 010548 195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLE 274 (507)
Q Consensus 195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 274 (507)
.+.++++|..+|.+.+|.++.+|+....+.....+.+..+++.+.+.+.. ..++.|+++.|+.+...
T Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~D~-----~~~g~i~~~ef~~~~~~-------- 72 (172)
T 2znd_A 6 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDR-----ENKAGVNFSEFTGVWKY-------- 72 (172)
T ss_dssp CHHHHHHHHHHCTTCSSCEEHHHHHHHCCCSSSSCCCHHHHHHHHHHHCS-----SSSSEECHHHHHHHHHH--------
T ss_pred hhHHHHHHHHhCCCCCCcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHhCC-----CCCCcCCHHHHHHHHHH--------
Confidence 35678899999999999999999999888765577888888877666532 23678999999988542
Q ss_pred chhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC--CCC
Q 010548 275 TTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDE 352 (507)
Q Consensus 275 ~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p--~~~ 352 (507)
.+-++.+|+.||.|++|.|+.+|+..++......+ ...
T Consensus 73 ----------------------------------------~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~ 112 (172)
T 2znd_A 73 ----------------------------------------ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFH 112 (172)
T ss_dssp ----------------------------------------HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHH
Confidence 13578899999999999999999999998753221 122
Q ss_pred CccccccccCCCCccchHhHHhhhhhh
Q 010548 353 APYKDAAETTALGNLTLKGFVSKWALM 379 (507)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~w~~~ 379 (507)
..+...++.|.+|.|++++|+.++...
T Consensus 113 ~~~~~~~d~~~dg~i~~~eF~~~~~~~ 139 (172)
T 2znd_A 113 DILIRKFDRQGRGQIAFDDFIQGCIVL 139 (172)
T ss_dssp HHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 334455678999999999999998765
No 432
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.46 E-value=8.3e-08 Score=102.31 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=56.4
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCCC----CCccceeEEEEE------Ec-C-----CCeEEEEEEecCCchhhh
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA----PTTGEQYAVNVV------DQ-P-----GGNKKTLILQEIPEEGVK 486 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~----~t~~~~~~~~~~------~~-~-----~~~~~~~i~Dt~G~~~~~ 486 (507)
..+|+++|.+|+|||||++++++..+..... ++.+..+..... .. . .....+.+|||+|++.|.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 4699999999999999999999765432211 122211110000 00 0 011258899999999998
Q ss_pred hhccchhhcccccEEEEEEeC
Q 010548 487 KILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 487 ~~~~~~~~~~~ad~vilv~D~ 507 (507)
..+ ..+++.||++++|||+
T Consensus 85 ~~~--~r~~~~aD~aILVvDa 103 (594)
T 1g7s_A 85 TLR--KRGGALADLAILIVDI 103 (594)
T ss_dssp TSB--CSSSBSCSEEEEEEET
T ss_pred HHH--HHHHhhCCEEEEEEEC
Confidence 877 5678999999999996
No 433
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.46 E-value=2.5e-07 Score=102.92 Aligned_cols=85 Identities=18% Similarity=0.117 Sum_probs=60.0
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCCCCCCC----------------C--CCccceeEEEEEE------------cCCC
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY----------------A--PTTGEQYAVNVVD------------QPGG 470 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~----------------~--~t~~~~~~~~~~~------------~~~~ 470 (507)
.+..||+|+|.+|+|||||+++|++....... . .|+......-... .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 35679999999999999999999965221111 1 1222111111111 1345
Q ss_pred eEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548 471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 471 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
...+.+|||+|+.+|.... ..+++.+|++|+|||+
T Consensus 97 ~~~i~liDTPG~~df~~~~--~~~l~~aD~ailVvDa 131 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEV--TAALRVTDGALVVVDT 131 (842)
T ss_dssp EEEEEEECCCCCCSSCHHH--HHHHHTCSEEEEEEET
T ss_pred CceEEEEECcCchhhHHHH--HHHHHhCCEEEEEEeC
Confidence 7789999999999998776 6889999999999996
No 434
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=98.46 E-value=2.7e-07 Score=82.40 Aligned_cols=141 Identities=20% Similarity=0.281 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcC
Q 010548 192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG 271 (507)
Q Consensus 192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~ 271 (507)
++..+.+++.|..+|.+.+|.++.+|+...... ++...+..++..+.+.+.. ..++.|+++.|+.+.......
T Consensus 7 ~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~D~-----~~~g~i~~~EF~~~~~~~~~~- 79 (179)
T 2f2o_A 7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDA-----DGNGTIDFPEFLTMMARKMKD- 79 (179)
T ss_dssp CSHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHCT-----TCSSSBCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhcc-----CCCCCCcHHHHHHHHHHHccC-
Confidence 345677899999999999999999999998876 4667777777777665532 236789999999886643310
Q ss_pred CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC--
Q 010548 272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP-- 349 (507)
Q Consensus 272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p-- 349 (507)
....+-++.+|+.||.|++|.|+.+|+..++.......
T Consensus 80 ----------------------------------------~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~g~~~~~ 119 (179)
T 2f2o_A 80 ----------------------------------------TDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTD 119 (179)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHC--CCCH
T ss_pred ----------------------------------------cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCH
Confidence 12345688999999999999999999999998764221
Q ss_pred CCCCccccccccCCCCccchHhHHhhhhhh
Q 010548 350 WDEAPYKDAAETTALGNLTLKGFVSKWALM 379 (507)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 379 (507)
.....+...++.|.+|.|++++|+.++.-.
T Consensus 120 ~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~ 149 (179)
T 2f2o_A 120 EEVDEMIREADIDGDGQVNYEEFVQMMTAK 149 (179)
T ss_dssp HHHHHHHHHHCTTCSSSEEHHHHHHHSCC-
T ss_pred HHHHHHHHHcCCCCCCcCcHHHHHHHHHHc
Confidence 112334455678999999999999977544
No 435
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=98.45 E-value=3.4e-07 Score=83.16 Aligned_cols=137 Identities=16% Similarity=0.206 Sum_probs=101.2
Q ss_pred cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHc
Q 010548 191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK 270 (507)
Q Consensus 191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~ 270 (507)
.++....++++|..+|.+.+|.++.+|+..+.+.. +...+ .+++.+.+.+. . ..++.|+++.|+.+....
T Consensus 47 ~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~-g~~~~-~~~~~l~~~~D---~--d~~g~i~~~EF~~~~~~~--- 116 (191)
T 3k21_A 47 NDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKD-GLKLP-YNFDLLLDQID---S--DGSGKIDYTEFIAAALDR--- 116 (191)
T ss_dssp CCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHT-TCCCC-TTHHHHHHHHC---T--TCSSSEEHHHHHHHHSCG---
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHc-CCCcH-HHHHHHHHHhC---C--CCCCeEeHHHHHHHHHhh---
Confidence 44567789999999999999999999999998875 44444 66666655552 2 236789999999874100
Q ss_pred CCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC-CCCC
Q 010548 271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA-PESP 349 (507)
Q Consensus 271 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~-p~~p 349 (507)
.....+-++.+|+.||.|++|.|+.+|+..++... .+.+
T Consensus 117 ----------------------------------------~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~ 156 (191)
T 3k21_A 117 ----------------------------------------KQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGN 156 (191)
T ss_dssp ----------------------------------------GGCCHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHSSSCSC
T ss_pred ----------------------------------------hhccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcCCCCC
Confidence 00123578899999999999999999999999763 2222
Q ss_pred CC------CCccccccccCCCCccchHhHHhhhh
Q 010548 350 WD------EAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 350 ~~------~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
.. ...+...++.|.+|.|++++|+.++.
T Consensus 157 l~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~ 190 (191)
T 3k21_A 157 ITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEMMK 190 (191)
T ss_dssp CCHHHHHHHHHHHHHHCSSSSSSBCHHHHHHHHC
T ss_pred CCHhHHHHHHHHHHHhcCCCCCeECHHHHHHHHc
Confidence 21 22345567889999999999998764
No 436
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.44 E-value=1.1e-07 Score=95.87 Aligned_cols=70 Identities=13% Similarity=0.239 Sum_probs=52.8
Q ss_pred EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (507)
Q Consensus 425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv 504 (507)
+|+++|.+|+|||||+++|+ ....|.. .....+.. +..++.+|||+|+++|.... ...++.+|++++|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~--~~~~~~~~--~~~~i~iiDtPGh~~f~~~~--~~~~~~aD~ailV 90 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSD--ITMYNNDK--EGRNMVFVDAHSYPKTLKSL--ITALNISDIAVLC 90 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESS--SEEEEECS--SSSEEEEEECTTTTTCHHHH--HHHHHTCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEE--eeEEEEec--CCeEEEEEECCChHHHHHHH--HHHHHHCCEEEEE
Confidence 89999999999999999998 1112222 22222333 44568999999999986555 5678999999999
Q ss_pred Ee
Q 010548 505 YD 506 (507)
Q Consensus 505 ~D 506 (507)
+|
T Consensus 91 vd 92 (370)
T 2elf_A 91 IP 92 (370)
T ss_dssp EC
T ss_pred Ec
Confidence 98
No 437
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.43 E-value=1.4e-07 Score=105.56 Aligned_cols=85 Identities=13% Similarity=0.046 Sum_probs=57.5
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCC-------CCC-------CCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERP-------FSE-------NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK 486 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~-------~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 486 (507)
...+||+++|.+++|||||+++|++.. +.. ....+.|+......+.+..+..++.+|||+|+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 356899999999999999999998741 100 001122221111122333456788999999999998
Q ss_pred hhccchhhcccccEEEEEEeC
Q 010548 487 KILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 487 ~~~~~~~~~~~ad~vilv~D~ 507 (507)
... ..+++.+|++|+|||+
T Consensus 374 ~~m--i~gas~AD~aILVVDA 392 (1289)
T 3avx_A 374 KNM--ITGAAQMDGAILVVAA 392 (1289)
T ss_dssp HHH--HHTSCCCSEEEEEEET
T ss_pred HHH--HHHHhhCCEEEEEEcC
Confidence 666 6788999999999996
No 438
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=98.42 E-value=2.1e-07 Score=79.47 Aligned_cols=131 Identities=16% Similarity=0.156 Sum_probs=96.6
Q ss_pred HHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccch
Q 010548 197 ALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETT 276 (507)
Q Consensus 197 ~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~ 276 (507)
.++++|..+|.+.+|.++.+|+....+.+ +...+..++..+.+ ..++.|+++.|+.+......
T Consensus 6 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~---------~~~g~i~~~eF~~~~~~~~~------- 68 (140)
T 1ggw_A 6 PYKQAFSLFDRHGTGRIPKTSIGDLLRAC-GQNPTLAEITEIES---------TLPAEVDMEQFLQVLNRPNG------- 68 (140)
T ss_dssp TTHHHHHHTCSSSSSEECHHHHHHHHHHT-SCCCCHHHHHHHHT---------TSCSSEEHHHHHHHHCTTSS-------
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHHHHHc-CCCCCHHHHHHHHh---------CCCCcCcHHHHHHHHHHHhc-------
Confidence 36788999999999999999999988775 55677777766654 34678999999987431110
Q ss_pred hHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--CCCCCCCc
Q 010548 277 WAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--ESPWDEAP 354 (507)
Q Consensus 277 w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~~p~~~~~ 354 (507)
..++...+-++.+|+.||.|++|.|+.+|+..++.... ..+.....
T Consensus 69 --------------------------------~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~ 116 (140)
T 1ggw_A 69 --------------------------------FDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDE 116 (140)
T ss_dssp --------------------------------SSSSCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHHHHSCSCHHHHHH
T ss_pred --------------------------------ccCcccHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCCCHHHHHH
Confidence 01112356789999999999999999999999998642 22222233
Q ss_pred cccccccCCCCccchHhHHhhhh
Q 010548 355 YKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
+...++. .+|.|++++|+.++.
T Consensus 117 ~~~~~d~-~dg~i~~~eF~~~~~ 138 (140)
T 1ggw_A 117 LLKGVPV-KDGMVNYHDFVQMIL 138 (140)
T ss_dssp HHHHTTC-SSCCSTTTHHHHHHH
T ss_pred HHHhccC-CCCcEeHHHHHHHHh
Confidence 4455667 899999999998764
No 439
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=98.40 E-value=2e-07 Score=81.31 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=104.2
Q ss_pred cHHHHHHHHHHHhhccC--CCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHH
Q 010548 191 KPRCVRALKRIFIICDH--DMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI 268 (507)
Q Consensus 191 ~~~~~~~l~~~~~~~d~--~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~ 268 (507)
.++..+.++++|..+|. +.+|.++.+|+....+.. +...+..++..+ ..+ +...++.|+++.|+.+.....
T Consensus 4 s~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~l-~~~-----D~~~~g~i~~~eF~~~~~~~~ 76 (156)
T 1wdc_C 4 SQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCL-GINPRNEDVFAV-GGT-----HKMGEKSLPFEEFLPAYEGLM 76 (156)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHT-TCCCCHHHHHHT-TCC-----SSTTSCEECHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHc-CCCCCHHHHHHH-Hhh-----CCCCCCeeeHHHHHHHHHHHh
Confidence 34567789999999999 999999999999988774 556677666554 222 222367899999999876443
Q ss_pred HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCC
Q 010548 269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348 (507)
Q Consensus 269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~ 348 (507)
.. .....+.++.+|+.||.|++|.|+.+|+..++......
T Consensus 77 ~~----------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 116 (156)
T 1wdc_C 77 DC----------------------------------------EQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGER 116 (156)
T ss_dssp TS----------------------------------------CCCCHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSSSC
T ss_pred hc----------------------------------------cCChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCC
Confidence 11 01124568899999999999999999999999875322
Q ss_pred --CCCCCccccc--cccCCCCccchHhHHhhhhh
Q 010548 349 --PWDEAPYKDA--AETTALGNLTLKGFVSKWAL 378 (507)
Q Consensus 349 --p~~~~~~~~~--~~~~~~~~~~~~~~~~~w~~ 378 (507)
+.....+... ++.|.+|.|++++|+..+.-
T Consensus 117 ~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~ 150 (156)
T 1wdc_C 117 LSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMA 150 (156)
T ss_dssp CCHHHHHHHHHHHTCCCCTTSEEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCCCcEeHHHHHHHHhc
Confidence 2223334555 78899999999999987654
No 440
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.40 E-value=3e-07 Score=97.92 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=52.7
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCC----------C---CCCccceeEEE--EEEc---CCCeEEEEEEecCCch
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN----------Y---APTTGEQYAVN--VVDQ---PGGNKKTLILQEIPEE 483 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~----------~---~~t~~~~~~~~--~~~~---~~~~~~~~i~Dt~G~~ 483 (507)
+..+|+++|.+++|||||+++|+...-... + ....|...... .+.+ ++....+.+|||+|+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 357899999999999999999986321110 0 00111111111 1211 4456789999999999
Q ss_pred hhhhhccchhhcccccEEEEEEeC
Q 010548 484 GVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 484 ~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
.|.... ..+++.||++++|+|+
T Consensus 83 dF~~ev--~~~l~~aD~aILVVDa 104 (599)
T 3cb4_D 83 DFSYEV--SRSLAACEGALLVVDA 104 (599)
T ss_dssp GGHHHH--HHHHHHCSEEEEEEET
T ss_pred HHHHHH--HHHHHHCCEEEEEEEC
Confidence 998776 6789999999999996
No 441
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.40 E-value=5.3e-07 Score=86.66 Aligned_cols=114 Identities=20% Similarity=0.233 Sum_probs=66.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCCCCCCeeeCCccc--CCceEEEEEeCCCCccchh------
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATESVPEK---------VPPVHAPTRLPPDFY--PDRVPVTIIDTSSSLENKG------ 74 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~---------~~~~~~~~t~~~~~~--~~~~~~~i~Dt~G~~~~~~------ 74 (507)
.++++|+|++|+|||||+|.|++...... ++.......+...+. .-...+.++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47899999999999999999997542211 111000001111111 1124689999998642110
Q ss_pred hhH----------------------HhhccCCEEEEEEeCC-ChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548 75 KLN----------------------EELKRADAVVLTYACN-QQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (507)
Q Consensus 75 ~~~----------------------~~~~~ad~il~V~D~~-~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 130 (507)
... ..+..+++.++++|.. .+.+..+.. ++..+++. +++|+|.||+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~--~l~~L~~~---~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLE--FMKHLSKV---VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHH--HHHHHHTT---SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHH--HHHHHHhc---CcEEEEEeccccCCH
Confidence 000 1133468899999855 444444432 56666553 899999999998653
No 442
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.39 E-value=3.7e-07 Score=92.12 Aligned_cols=83 Identities=12% Similarity=0.072 Sum_probs=57.9
Q ss_pred eEEEEEecCCCCchHHHHHHHhcCCCCCCC-CCCccceeEEEEEEcCCC---------------eEEEEEEecCCchhh-
Q 010548 423 VFRCLLFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGG---------------NKKTLILQEIPEEGV- 485 (507)
Q Consensus 423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~- 485 (507)
..+|++||.||||||||+|++++....... .|..+.......+.+++. ...+.+||++|....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 479999999999999999999998763333 344344444445555531 135789999995432
Q ss_pred ------hhhccchhhcccccEEEEEEeC
Q 010548 486 ------KKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 486 ------~~~~~~~~~~~~ad~vilv~D~ 507 (507)
.... ..+++.+|+++.|+|+
T Consensus 100 s~~e~L~~~f--l~~ir~~d~il~Vvd~ 125 (392)
T 1ni3_A 100 STGVGLGNAF--LSHVRAVDAIYQVVRA 125 (392)
T ss_dssp CSSSSSCHHH--HHHHTTCSEEEEEEEC
T ss_pred cHHHHHHHHH--HHHHHHHHHHHHHHhc
Confidence 1122 3567899999999985
No 443
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=98.39 E-value=1.3e-07 Score=85.48 Aligned_cols=141 Identities=21% Similarity=0.166 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCC----------CCCHHHHHHHHHHHHhhccCCccCCCcchhhHHH
Q 010548 193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA----------PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLF 262 (507)
Q Consensus 193 ~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~----------~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~ 262 (507)
+....+.++|..+|.+.+|.++.+|+......++.. .....+++.+.+.+ +...++.|+++.|+.
T Consensus 37 ~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----D~d~~g~i~~~ef~~ 111 (191)
T 3khe_A 37 EETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSV-----DFDRNGYIEYSEFVT 111 (191)
T ss_dssp TTTHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHT-----CTTCSSSEEHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHh-----CCCCCCcCCHHHHHH
Confidence 334678899999999999999999999988876322 22223333332222 222367899999998
Q ss_pred HHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhh
Q 010548 263 LHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLF 342 (507)
Q Consensus 263 l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f 342 (507)
+..... .....+.+..+|+.+|.|++|.|+.+|+..++
T Consensus 112 ~~~~~~------------------------------------------~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l 149 (191)
T 3khe_A 112 VCMDKQ------------------------------------------LLLSRERLLAAFQQFDSDGSGKITNEELGRLF 149 (191)
T ss_dssp HHSCHH------------------------------------------HHCCHHHHHHHHHHHCTTCSSEECHHHHHHHT
T ss_pred HHHHhc------------------------------------------ccchHHHHHHHHHHHCCCCcCcCCHHHHHHHH
Confidence 743110 01123568899999999999999999999999
Q ss_pred ccCCCCCCCCCccccccccCCCCccchHhHHhhhhhhh
Q 010548 343 LTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMT 380 (507)
Q Consensus 343 ~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 380 (507)
...+..+.....+...++.|.+|.|++++|+..|.-+.
T Consensus 150 ~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~~ 187 (191)
T 3khe_A 150 GVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQKIC 187 (191)
T ss_dssp TSSCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHh
Confidence 93222222233345567889999999999999887654
No 444
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=98.39 E-value=3.8e-07 Score=93.26 Aligned_cols=143 Identities=20% Similarity=0.301 Sum_probs=105.8
Q ss_pred hcccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548 188 QTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF 267 (507)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~ 267 (507)
..+.+...+.++++|..+|.+.+|.++.+|+...+.. ++..++..+++.+.+.+. ...++.|+++.|+.+....
T Consensus 304 ~~ls~eei~el~~~F~~fD~D~dG~Is~~EL~~~L~~-lg~~~s~eel~~Lf~~~D-----~DgdG~IsfeEFl~ll~~~ 377 (450)
T 3sg6_A 304 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVD-----ADGNGTIDFPEFLTMMARK 377 (450)
T ss_dssp -CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH-TTCCCCHHHHHHHHHTTC-----TTSSSSEEHHHHHHHHHC-
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhc-----cCCCCcccHHHHHHHHHhh
Confidence 3455667789999999999999999999999999887 456677777766655442 2236789999999886421
Q ss_pred HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548 268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE 347 (507)
Q Consensus 268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~ 347 (507)
.. .....+.++.+|+.||.|++|.|+.+|+..++.....
T Consensus 378 ~~-----------------------------------------~~~~~e~l~~aFk~fD~D~dG~Is~eELr~~L~~lG~ 416 (450)
T 3sg6_A 378 MK-----------------------------------------DTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE 416 (450)
T ss_dssp ----------------------------------------------CHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTC
T ss_pred cc-----------------------------------------ccchhhHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCC
Confidence 10 0112356889999999999999999999999987532
Q ss_pred --CCCCCCccccccccCCCCccchHhHHhhhh
Q 010548 348 --SPWDEAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 348 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
.......+...++.|.+|.|++++|++++.
T Consensus 417 ~ls~eei~~Lf~~~D~D~DG~IsfdEFv~~L~ 448 (450)
T 3sg6_A 417 KLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 448 (450)
T ss_dssp CCCHHHHHHHHHHHCTTSSSSEEHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 222223345556789999999999998764
No 445
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=98.38 E-value=4.8e-07 Score=81.22 Aligned_cols=135 Identities=13% Similarity=0.209 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcC
Q 010548 192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG 271 (507)
Q Consensus 192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~ 271 (507)
++....++++|..+|.+.+|.++.+|+........ ..+.+++.+...+ ..+ .++.|+++.|+.+....
T Consensus 35 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g---~~~~~~~~~~~~~---D~d--~~g~i~~~Ef~~~~~~~---- 102 (180)
T 3mse_B 35 NNHIKYINELFYKLDTNHNGSLSHREIYTVLASVG---IKKWDINRILQAL---DIN--DRGNITYTEFMAGCYRW---- 102 (180)
T ss_dssp HHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTT---CCHHHHHHHHHHH---CTT--CCSEECHHHHHHHHSCC----
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcC---CCHHHHHHHHHHh---CCC--CCCcCcHHHHHHHHHhc----
Confidence 55678899999999999999999999999988653 2345555544444 222 36789999999763300
Q ss_pred CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCC
Q 010548 272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD 351 (507)
Q Consensus 272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~ 351 (507)
. ....+-++.+|+.||.|++|.|+.+|+..++...+..+..
T Consensus 103 -------------------------~--------------~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~ 143 (180)
T 3mse_B 103 -------------------------K--------------NIESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKVLDNND 143 (180)
T ss_dssp -------------------------T--------------TC--CHHHHHHHHHCTTCSSCBCHHHHHHHTTTSSCCHHH
T ss_pred -------------------------c--------------cCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHcCCCCCHHH
Confidence 0 0002468899999999999999999999999843333322
Q ss_pred CCccccccccCCC--------CccchHhHHhhhh
Q 010548 352 EAPYKDAAETTAL--------GNLTLKGFVSKWA 377 (507)
Q Consensus 352 ~~~~~~~~~~~~~--------~~~~~~~~~~~w~ 377 (507)
...+...++.|.+ |.|++++|+.+..
T Consensus 144 ~~~~~~~~d~~~d~~~~~~~~G~i~~~eF~~~l~ 177 (180)
T 3mse_B 144 IDNFFLSVHSIKKGIPREHIINKISFQEFKDYML 177 (180)
T ss_dssp HHHHHHHHHTC---------CCCBCHHHHHHHHH
T ss_pred HHHHHHHhhhccCcccccccCCeeeHHHHHHHHH
Confidence 3344555677777 9999999998653
No 446
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=98.38 E-value=7.3e-07 Score=80.68 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=97.7
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccChhhhHHHH----hHhcCCCCCHHHHH--HHHHHHHhhccCCccCCCcchhhHHHH
Q 010548 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQ----VKCFNAPLQPAEIV--GVKRVVQEKQHDGVNDLGLTLSGFLFL 263 (507)
Q Consensus 190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~----~~~~~~~l~~~~~~--~l~~~i~~~~~~~~~~~~~~~~~f~~l 263 (507)
..++..+.++++|..+|.+.+|.++.+|+.... .+.++...+..++. .+...+..... ..++.|+++.|+.+
T Consensus 14 ~s~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~~~~~~~~~~~~l~~~~D~--d~~g~i~~~EF~~~ 91 (195)
T 1qv0_A 14 DNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGM--EYGKEIAFPQFLDG 91 (195)
T ss_dssp TCHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHTTC--CTTCCBCHHHHHHH
T ss_pred CCHHHHHHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCC--CCCceEcHHHHHHH
Confidence 356777889999999999999999999998422 22345544444211 23333333222 23678999999998
Q ss_pred HHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhc
Q 010548 264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL 343 (507)
Q Consensus 264 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~ 343 (507)
.......... .|. + . -...-..++..+|+.||.|++|.|+.+|+..++.
T Consensus 92 ~~~~~~~~~~--~~~------------------~-------~----~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~ 140 (195)
T 1qv0_A 92 WKQLATSELK--KWA------------------R-------N----EPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGK 140 (195)
T ss_dssp HHHHHHHHHH--HHH------------------T-------T----CCCHHHHHHHHHHHHTC----CEECHHHHHHHHH
T ss_pred HHHHHhhhhh--ccc------------------c-------c----HHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence 7765432110 000 0 0 0001123455999999999999999999999998
Q ss_pred cCCC--CCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548 344 TAPE--SPWDEAPYKDAAETTALGNLTLKGFVSKWAL 378 (507)
Q Consensus 344 ~~p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 378 (507)
.... .+.....+...++.|.+|.|++++|+..+.-
T Consensus 141 ~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~ 177 (195)
T 1qv0_A 141 ISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLG 177 (195)
T ss_dssp HHSSCCCHHHHHHHHHHSCCCTTSCEEHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence 6532 1222334555678899999999999987753
No 447
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=98.37 E-value=1.1e-06 Score=78.04 Aligned_cols=130 Identities=18% Similarity=0.223 Sum_probs=100.2
Q ss_pred HHHHHHHHhhccCCCCCccChhhhHHHHhHhcC-------CCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548 195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFN-------APLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF 267 (507)
Q Consensus 195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~-------~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~ 267 (507)
.+.++++|..+| +.+|.++.+|+....+..++ ..++..+++.+.+.+.. ..++.|+++.|+.+...
T Consensus 3 ~~~l~~~F~~~D-d~~G~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~~l~~~~D~-----~~~g~i~~~eF~~~~~~- 75 (173)
T 1alv_A 3 VRQFRRLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDS-----DTTGKLGFEEFKYLWNN- 75 (173)
T ss_dssp HHHHHHHHHHHH-GGGTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCT-----TCSSSBCHHHHHHHHHH-
T ss_pred hhHHHHHHHHHh-CCCCCcCHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHcC-----CCCCccCHHHHHHHHHH-
Confidence 456888999999 99999999999999999865 66777777777766532 23567999999988652
Q ss_pred HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548 268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE 347 (507)
Q Consensus 268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~ 347 (507)
.+.++.+|+.||.|++|.|+.+|+..++.....
T Consensus 76 -----------------------------------------------~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~ 108 (173)
T 1alv_A 76 -----------------------------------------------IKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGF 108 (173)
T ss_dssp -----------------------------------------------HHHHHHHHHHHCTTCCSSBCTTTHHHHHHHHTC
T ss_pred -----------------------------------------------HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCC
Confidence 145788999999999999999999999986532
Q ss_pred CC--CCCCccccccccCCCCccchHhHHhhhhhh
Q 010548 348 SP--WDEAPYKDAAETTALGNLTLKGFVSKWALM 379 (507)
Q Consensus 348 ~p--~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 379 (507)
.+ .....+...++ +.+|.|++++|+.++...
T Consensus 109 ~~~~~~~~~~~~~~d-d~dg~i~~~eF~~~~~~~ 141 (173)
T 1alv_A 109 HLNEHLYSMIIRRYS-DEGGNMDFDNFISCLVRL 141 (173)
T ss_dssp CCCHHHHHHHHHHHT-CSSSCBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHHH
Confidence 22 11222334445 889999999999988764
No 448
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.37 E-value=6.1e-07 Score=95.41 Aligned_cols=84 Identities=20% Similarity=0.213 Sum_probs=54.7
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCC-----------C----C--CCccceeEEEEEE-cCCCeEEEEEEecCCch
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN-----------Y----A--PTTGEQYAVNVVD-QPGGNKKTLILQEIPEE 483 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~-----------~----~--~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~ 483 (507)
+..+|+++|.+++|||||+++|+...-... . . .|.......-... .++....+.+|||+|+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 457999999999999999999986311100 0 0 0111111110111 13456788999999999
Q ss_pred hhhhhccchhhcccccEEEEEEeC
Q 010548 484 GVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 484 ~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
.|.... ..+++.||++++|||+
T Consensus 85 dF~~ev--~r~l~~aD~aILVVDa 106 (600)
T 2ywe_A 85 DFSYEV--SRALAACEGALLLIDA 106 (600)
T ss_dssp GGHHHH--HHHHHTCSEEEEEEET
T ss_pred hHHHHH--HHHHHhCCEEEEEEEC
Confidence 998766 5788999999999996
No 449
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.36 E-value=9e-07 Score=87.41 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=33.4
Q ss_pred CeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 470 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
+..++.+|||+|++++++++ ..||++++++|+|||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w--~~yy~~a~~iIfV~di 194 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXW--VSFFSDVDCAIFVTSL 194 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHH--HTTSCSCSEEEEEEEG
T ss_pred eeeeeccccCCCcccccccH--HHHhccCCEEEEEEEC
Confidence 56789999999999999999 7899999999999985
No 450
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=98.36 E-value=2.8e-07 Score=80.03 Aligned_cols=137 Identities=18% Similarity=0.217 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCC
Q 010548 193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR 272 (507)
Q Consensus 193 ~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~ 272 (507)
+..+.++++|..+|.+.+|.++.+|+. ........ ..++.+.+.+. .+ .++.|+++.|+.+...+..
T Consensus 3 ~~~~~l~~~F~~~D~d~~G~i~~~el~-~l~~~~~~----~~~~~~~~~~D---~~--~~g~i~~~ef~~~~~~~~~--- 69 (155)
T 3ll8_B 3 DEIKRLGKRFKKLDLDNSGSLSVEEFM-SLPELQQN----PLVQRVIDIFD---TD--GNGEVDFKEFIEGVSQFSV--- 69 (155)
T ss_dssp HHHHHHHHHHHHHCTTCSSSBCHHHHT-TSGGGTTC----TTHHHHHHHHC---TT--CSSSBCHHHHHHHHGGGCS---
T ss_pred HHHHHHHHHHHHhCcCCCCeEcHHHHH-Hhhccccc----hHHHHHHHHHC---CC--CCCcCcHHHHHHHHHHHcc---
Confidence 345678999999999999999999993 32222211 24444444442 22 3678999999988542110
Q ss_pred ccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCC-
Q 010548 273 LETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD- 351 (507)
Q Consensus 273 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~- 351 (507)
.....+.++.+|+.+|.|++|.|+.+|+..++....+.+..
T Consensus 70 --------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~ 111 (155)
T 3ll8_B 70 --------------------------------------KGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKD 111 (155)
T ss_dssp --------------------------------------SCCHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHGGGSCH
T ss_pred --------------------------------------cCCHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhccCCCH
Confidence 11234678999999999999999999999999863222222
Q ss_pred --CCccccc----cccCCCCccchHhHHhhhhhhh
Q 010548 352 --EAPYKDA----AETTALGNLTLKGFVSKWALMT 380 (507)
Q Consensus 352 --~~~~~~~----~~~~~~~~~~~~~~~~~w~~~~ 380 (507)
...+... ++.|.+|.|++++|+..+..+.
T Consensus 112 ~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~~ 146 (155)
T 3ll8_B 112 TQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLD 146 (155)
T ss_dssp HHHHHHHHHHHHHHCTTSSSSBCHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccC
Confidence 2233444 7889999999999999877654
No 451
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=98.35 E-value=3e-07 Score=83.35 Aligned_cols=134 Identities=16% Similarity=0.192 Sum_probs=100.4
Q ss_pred HHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccc
Q 010548 196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET 275 (507)
Q Consensus 196 ~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~ 275 (507)
+.++++|..+|.+.+|.++.+|+....... +..++..++..+.+.+.. ..++.|+++.|+.+...+
T Consensus 10 ~~l~~~F~~~D~d~dG~I~~~E~~~~l~~~-g~~~~~~~~~~l~~~~D~-----d~dG~I~~~EF~~~~~~~-------- 75 (188)
T 1s6i_A 10 GGLKELFKMIDTDNSGTITFDELKDGLKRV-GSELMESEIKDLMDAADI-----DKSGTIDYGEFIAATVHL-------- 75 (188)
T ss_dssp CSHHHHHHTTSSSSSSCEEHHHHHHHHTTT-TCCCCHHHHHHHHHHTCT-----TCSSEECHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHcCC-----CCCCeEeHHHHHHHHHHH--------
Confidence 457889999999999999999999888775 567777777766655532 235679999999874210
Q ss_pred hhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCcc
Q 010548 276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPY 355 (507)
Q Consensus 276 ~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~ 355 (507)
. . .+ + .+.++.+|+.||.|++|.|+.+|+..++......+.....+
T Consensus 76 --------~--------~--~~------~----------~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~g~~~~~~~~~ 121 (188)
T 1s6i_A 76 --------N--------K--LE------R----------EENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDDM 121 (188)
T ss_dssp --------S--------S--SC------C----------CCSTHHHHHHTTTTCSSEEEHHHHHHTTTTTTCCTTHHHHH
T ss_pred --------h--------c--cC------H----------HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHH
Confidence 0 0 00 0 12367899999999999999999999998765444434445
Q ss_pred ccccccCCCCccchHhHHhhhh
Q 010548 356 KDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
...++.|.+|.|++++|+..+.
T Consensus 122 ~~~~D~d~dG~Is~~EF~~~~~ 143 (188)
T 1s6i_A 122 IKEIDQDNDGQIDYGEFAAMMR 143 (188)
T ss_dssp HHHHCSSSSSEEETTHHHHTTS
T ss_pred HHHHCCCCCCcEeHHHHHHHHH
Confidence 5667889999999999998654
No 452
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.35 E-value=1.2e-06 Score=86.08 Aligned_cols=36 Identities=3% Similarity=0.002 Sum_probs=33.0
Q ss_pred CeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 470 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
+..++.+|||+|++++++++ ..||++++++|+|||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w--~~yf~~~~~iIfV~dl 200 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKW--IHCFENVTSIMFLVAL 200 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTG--GGGCSSCSEEEEEEEG
T ss_pred eceeeEEEEcCCchhHHHHH--HHHhCCCCEEEEEEEC
Confidence 46889999999999999999 7899999999999963
No 453
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.34 E-value=5e-07 Score=98.36 Aligned_cols=83 Identities=12% Similarity=0.064 Sum_probs=56.6
Q ss_pred CceEEEEEecCCCCchHHHHHHHhc--CCCCC---CCC-------------CCccceeEEEEEEcCCCeEEEEEEecCCc
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLE--RPFSE---NYA-------------PTTGEQYAVNVVDQPGGNKKTLILQEIPE 482 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~--~~~~~---~~~-------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 482 (507)
.+..+|+++|.+|+|||||+++|+. +.+.. +.. ...+.......+.. +..++.+|||+|.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~--~~~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW--EGHRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE--TTEEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE--CCeeEEEEECcCC
Confidence 3568999999999999999999995 22210 000 01111111112233 3578899999999
Q ss_pred hhhhhhccchhhcccccEEEEEEeC
Q 010548 483 EGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 483 ~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
..|.... ..+++.+|++++|+|+
T Consensus 86 ~df~~~~--~~~l~~aD~~llVvDa 108 (693)
T 2xex_A 86 VDFTVEV--ERSLRVLDGAVTVLDA 108 (693)
T ss_dssp SSCCHHH--HHHHHHCSEEEEEEET
T ss_pred cchHHHH--HHHHHHCCEEEEEECC
Confidence 9887766 6789999999999996
No 454
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.34 E-value=2.8e-07 Score=100.37 Aligned_cols=81 Identities=14% Similarity=0.115 Sum_probs=56.3
Q ss_pred CceEEEEEecCCCCchHHHHHHHhcCC--CCC------------------CCCCCccceeEEEEEEcCCCeEEEEEEecC
Q 010548 421 RNVFRCLLFGPQNAGKSALLNSFLERP--FSE------------------NYAPTTGEQYAVNVVDQPGGNKKTLILQEI 480 (507)
Q Consensus 421 ~~~~kv~ivG~~~vGKSsll~~l~~~~--~~~------------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~ 480 (507)
.+..+|+|+|.+|+|||||+++|+... +.. ...+|.... ...+.. +..++.+|||+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~--~~~~i~liDTP 85 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFW--KDHRINIIDTP 85 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEE--TTEEEEEECCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEE--CCeEEEEEECc
Confidence 356899999999999999999998421 100 011122211 112222 45788999999
Q ss_pred CchhhhhhccchhhcccccEEEEEEeC
Q 010548 481 PEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 481 G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
|+..|.... ..+++.+|++++|+|+
T Consensus 86 G~~df~~~~--~~~l~~aD~~ilVvDa 110 (691)
T 1dar_A 86 GHVDFTIEV--ERSMRVLDGAIVVFDS 110 (691)
T ss_dssp SSTTCHHHH--HHHHHHCSEEEEEEET
T ss_pred CccchHHHH--HHHHHHCCEEEEEEEC
Confidence 999888766 6789999999999996
No 455
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=98.34 E-value=6e-07 Score=80.90 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=100.6
Q ss_pred cHHHHHHHHHHHhhccCCCCCccChhhhHH-----HHhHhcCCCCCHHHHH--HHHHHHHhhccCCccCCCcchhhHHHH
Q 010548 191 KPRCVRALKRIFIICDHDMDGALNDAELNE-----FQVKCFNAPLQPAEIV--GVKRVVQEKQHDGVNDLGLTLSGFLFL 263 (507)
Q Consensus 191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~-----~~~~~~~~~l~~~~~~--~l~~~i~~~~~~~~~~~~~~~~~f~~l 263 (507)
.++..+.++++|..+|.+.+|.++.+|+.. .. +.++...+..++. .+...+..... ..++.|+++.|+.+
T Consensus 11 ~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l-~~~g~~~~~~~~~~~~~~~l~~~~D~--d~~g~i~~~EF~~~ 87 (191)
T 1uhk_A 11 NPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVI-NNLGATPEQAKRHKDAVEAFFGGAGM--KYGVETDWPAYIEG 87 (191)
T ss_dssp CHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHTTC--CTTCEEEHHHHHHH
T ss_pred CHHHHHHHHHHHhhccCCCCCcCcHHHHHHHHHHHHH-HHcCCCchhHHHHHHHHHHHHHHhCc--CCCCcCcHHHHHHH
Confidence 456677899999999999999999999983 33 3344444444211 23333333322 23668999999998
Q ss_pred HHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhc
Q 010548 264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL 343 (507)
Q Consensus 264 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~ 343 (507)
........... +. + . -...-..++..+|+.||.|++|.|+.+|+..++.
T Consensus 88 ~~~~~~~~~~~--~~------------------~-----~------~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~ 136 (191)
T 1uhk_A 88 WKKLATDELEK--YA------------------K-----N------EPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTK 136 (191)
T ss_dssp HHHHHHHHHHH--HH------------------T-----T------CCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred HHHHhcchhhh--hh------------------h-----h------hHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence 77554221000 00 0 0 0000123455999999999999999999999997
Q ss_pred cCCC--CCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548 344 TAPE--SPWDEAPYKDAAETTALGNLTLKGFVSKWAL 378 (507)
Q Consensus 344 ~~p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 378 (507)
.... .+.....+...++.|.+|.|++++|+..+.-
T Consensus 137 ~~g~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~~~~~ 173 (191)
T 1uhk_A 137 AAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLG 173 (191)
T ss_dssp HHTSCCSHHHHHHHHHHSCCCTTSCEEHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 6432 2222334555678899999999999998764
No 456
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.33 E-value=5.6e-07 Score=97.59 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=58.8
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCC----------------ccceeEEEEEEcCCCeEEEEEEecCCchhh
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPT----------------TGEQYAVNVVDQPGGNKKTLILQEIPEEGV 485 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t----------------~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 485 (507)
...+|+++|.+|+|||||++++++.........+ .+..+..+...+..+...+.+|||+|+.+|
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 4568999999999999999999954332111100 011111222223335678899999999998
Q ss_pred hhhccchhhcccccEEEEEEeC
Q 010548 486 KKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 486 ~~~~~~~~~~~~ad~vilv~D~ 507 (507)
.... ..+++.+|++++|+|+
T Consensus 88 ~~~~--~~~l~~ad~~ilVvD~ 107 (665)
T 2dy1_A 88 VGEI--RGALEAADAALVAVSA 107 (665)
T ss_dssp HHHH--HHHHHHCSEEEEEEET
T ss_pred HHHH--HHHHhhcCcEEEEEcC
Confidence 8766 6889999999999995
No 457
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.33 E-value=6.4e-07 Score=89.72 Aligned_cols=28 Identities=36% Similarity=0.595 Sum_probs=25.5
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCC
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFS 449 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~ 449 (507)
...+|+|+|++|||||||+|+|++.++.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3469999999999999999999999885
No 458
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=98.31 E-value=5.8e-07 Score=82.15 Aligned_cols=154 Identities=19% Similarity=0.249 Sum_probs=102.5
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (507)
Q Consensus 190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~ 269 (507)
+.+...+.++++|..+|.+.+|.++.+|+... .. ++.... +..++.....+ .++.|+++.|+.+......
T Consensus 23 ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~-~~-lg~~~~------~~~l~~~~D~d--~dg~i~~~EF~~~~~~~~~ 92 (202)
T 2bec_A 23 FSQASLLRLHHRFRALDRNKKGYLSRMDLQQI-GA-LAVNPL------GDRIIESFFPD--GSQRVDFPGFVRVLAHFRP 92 (202)
T ss_dssp CCHHHHHHHHHHHHHHCSSCSSCCCHHHHHTC-HH-HHHSTT------HHHHHHTTSCS--SCCCCCHHHHHHHHGGGSC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHH-Hh-cCCCcc------HHHHHHHhCCC--CCCcCcHHHHHHHHHHhcc
Confidence 45667788999999999999999999999988 33 332222 33344433222 3678999999988543221
Q ss_pred cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC
Q 010548 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP 349 (507)
Q Consensus 270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p 349 (507)
.. ....| ... . ..........+.++.+|+.||.|++|.|+.+|+..++....+.+
T Consensus 93 ~~---------------------~~~~~-~~~--~-~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~ 147 (202)
T 2bec_A 93 VE---------------------DEDTE-TQD--P-KKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQ 147 (202)
T ss_dssp CC---------------------HHHHC---------CCCCTTSHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHSCCSC
T ss_pred cc---------------------hhccc-ccc--c-ccccccccHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcCCC
Confidence 00 00001 000 0 01123445678899999999999999999999999998763333
Q ss_pred CCC---Cccccc----cccCCCCccchHhHHhhhhh
Q 010548 350 WDE---APYKDA----AETTALGNLTLKGFVSKWAL 378 (507)
Q Consensus 350 ~~~---~~~~~~----~~~~~~~~~~~~~~~~~w~~ 378 (507)
... ..+... ++.|.+|.|++++|+..+..
T Consensus 148 ~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~~ 183 (202)
T 2bec_A 148 VTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEK 183 (202)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 332 223444 78899999999999987654
No 459
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.31 E-value=1e-06 Score=96.07 Aligned_cols=84 Identities=11% Similarity=-0.001 Sum_probs=57.5
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCC--CCCC-----------C-----CCCccceeEEEEEEcC-----CCeEEEEEEe
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERP--FSEN-----------Y-----APTTGEQYAVNVVDQP-----GGNKKTLILQ 478 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~--~~~~-----------~-----~~t~~~~~~~~~~~~~-----~~~~~~~i~D 478 (507)
+..+|+|+|.+|+|||||+++|+... +... + ....+.......+.+. +....+.+||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 45799999999999999999998532 1110 0 0111111111122222 2337889999
Q ss_pred cCCchhhhhhccchhhcccccEEEEEEeC
Q 010548 479 EIPEEGVKKILSNKEALASCDVTIFVYDR 507 (507)
Q Consensus 479 t~G~~~~~~~~~~~~~~~~ad~vilv~D~ 507 (507)
|+|+..|.... ..+++.||++|+|+|+
T Consensus 89 TPG~~df~~~~--~~~l~~aD~aIlVvDa 115 (704)
T 2rdo_7 89 TPGHVDFTIEV--ERSMRVLDGAVMVYCA 115 (704)
T ss_pred CCCccchHHHH--HHHHHHCCEEEEEEeC
Confidence 99999988766 6789999999999996
No 460
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=98.31 E-value=3.7e-07 Score=78.64 Aligned_cols=129 Identities=14% Similarity=0.155 Sum_probs=95.6
Q ss_pred HHHHHHHHHhhccCCC-CCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCC
Q 010548 194 CVRALKRIFIICDHDM-DGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR 272 (507)
Q Consensus 194 ~~~~l~~~~~~~d~~~-d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~ 272 (507)
..+.++++|..+|.+. +|.++.+|+....+.. +...+..++..+...+... |+++.|+.+.......
T Consensus 12 ~~~~l~~~F~~~D~d~~~G~i~~~el~~~l~~~-g~~~~~~~~~~l~~~~d~~---------i~~~eF~~~~~~~~~~-- 79 (146)
T 2qac_A 12 EKVDESDVRIYFNEKSSGGKISIDNASYNARKL-GLAPSSIDEKKIKELYGDN---------LTYEQYLEYLSICVHD-- 79 (146)
T ss_dssp HHSCHHHHHHHHHHHCBTTBEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHCSE---------ECHHHHHHHHHHTCCT--
T ss_pred HHHHHHHHHHHhCccCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCC---------CCHHHHHHHHHHHhcC--
Confidence 3445788999999999 9999999999888764 6677887777776655321 9999999886522100
Q ss_pred ccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCC-
Q 010548 273 LETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD- 351 (507)
Q Consensus 273 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~- 351 (507)
....+.++..|+.||.|++|.|+.+|+..++.... .+..
T Consensus 80 ---------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g-~~~~~ 119 (146)
T 2qac_A 80 ---------------------------------------KDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWG-DALTD 119 (146)
T ss_dssp ---------------------------------------TCCHHHHHHHHHTTCTTCSSEEEHHHHHHHHHHSS-SCCCH
T ss_pred ---------------------------------------cchHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhC-CCCCH
Confidence 01245788999999999999999999999998753 2222
Q ss_pred --CCccccccccCCCCccchHhHHhhh
Q 010548 352 --EAPYKDAAETTALGNLTLKGFVSKW 376 (507)
Q Consensus 352 --~~~~~~~~~~~~~~~~~~~~~~~~w 376 (507)
...+...+ |.+|.|++++|+.++
T Consensus 120 ~~~~~~~~~~--d~dg~i~~~eF~~~l 144 (146)
T 2qac_A 120 QEAIDALNAF--SSEDNIDYKLFCEDI 144 (146)
T ss_dssp HHHHHHHHHH--CSSSEEEHHHHHHHH
T ss_pred HHHHHHHHHc--CCCCcCcHHHHHHHH
Confidence 22223333 889999999999865
No 461
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.29 E-value=4.1e-07 Score=88.06 Aligned_cols=59 Identities=19% Similarity=0.283 Sum_probs=36.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCc
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL 70 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~ 70 (507)
...++|+++|.||||||||+|+|.+... ...+..+++|........+..+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~--~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNI--AKTGDRPGITTSQQWVKVGKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC--C------------CCEEETTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCce--eecCCCCCeeeeeEEEEeCCCEEEEECcCcC
Confidence 3568999999999999999999998763 2233334445322211113368999999975
No 462
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=98.28 E-value=1e-06 Score=92.58 Aligned_cols=142 Identities=23% Similarity=0.177 Sum_probs=104.4
Q ss_pred cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhc-------CCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHH
Q 010548 191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCF-------NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFL 263 (507)
Q Consensus 191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~-------~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l 263 (507)
.++..+.++++|..+|.|.+|.++.+|+..+..... +......+++.+.+.+. .+ .++.|+++.|+.+
T Consensus 350 ~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D---~d--~dG~I~~~EF~~~ 424 (504)
T 3q5i_A 350 TLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVD---FD--KNGYIEYSEFISV 424 (504)
T ss_dssp CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHC--CCSCCCHHHHHHHHHHHHC---TT--CSSSEEHHHHHHH
T ss_pred cHHHHHHHHHHHHeeCCCCCCeEcHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhC---CC--CCCcEeHHHHHHH
Confidence 345567789999999999999999999998887753 33455666666655553 22 3678999999987
Q ss_pred HHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhc
Q 010548 264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL 343 (507)
Q Consensus 264 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~ 343 (507)
...... ....+-++.+|+.||.|+||.|+.+|+..++.
T Consensus 425 ~~~~~~------------------------------------------~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~ 462 (504)
T 3q5i_A 425 CMDKQI------------------------------------------LFSEERLRRAFNLFDTDKSGKITKEELANLFG 462 (504)
T ss_dssp HSCHHH------------------------------------------HTCHHHHHHHHHHHCTTCCSEECHHHHHHHTT
T ss_pred HHhhhc------------------------------------------ccCHHHHHHHHHHhcCCCCCcCcHHHHHHHHh
Confidence 431100 01135688999999999999999999999998
Q ss_pred cCCCCCCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548 344 TAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALM 379 (507)
Q Consensus 344 ~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 379 (507)
..+......+.+...++.|.+|.|++++|+.+..-+
T Consensus 463 ~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~ 498 (504)
T 3q5i_A 463 LTSISEKTWNDVLGEADQNKDNMIDFDEFVSMMHKI 498 (504)
T ss_dssp CSCCCHHHHHHHHHTTCSSCSSSEEHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh
Confidence 733222223445667789999999999999876543
No 463
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=98.27 E-value=1.3e-06 Score=91.58 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=102.3
Q ss_pred cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCC-------CCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHH
Q 010548 191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA-------PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFL 263 (507)
Q Consensus 191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~-------~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l 263 (507)
.+...+.++++|..+|.|.+|.++.+|+.......... .....+++.+.+.+ ..+ .++.|+++.|+.+
T Consensus 341 ~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---D~d--~~G~I~~~EF~~~ 415 (494)
T 3lij_A 341 SQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAA---DFD--RNGYIDYSEFVTV 415 (494)
T ss_dssp CHHHHHHHHHHHHHHCTTCSSEECHHHHHHTTHHHHSSCCCCC--CHHHHHHHHHHHHH---CTT--CSSSEEHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCCCCeEcHHHHHHHHHHhcccccccccccccHHHHHHHHHHh---CCC--CCCcCcHHHHHHH
Confidence 45566788999999999999999999999888876443 22344444444433 223 3678999999988
Q ss_pred HHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhc
Q 010548 264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL 343 (507)
Q Consensus 264 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~ 343 (507)
...... ....+-++..|+.||+|+||.|+.+|+..++.
T Consensus 416 ~~~~~~------------------------------------------~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~ 453 (494)
T 3lij_A 416 AMDRKS------------------------------------------LLSKDKLESAFQKFDQDGNGKISVDELASVFG 453 (494)
T ss_dssp HSCHHH------------------------------------------HTCHHHHHHHHHHHCTTCSSEECHHHHHHHC-
T ss_pred HHhhhc------------------------------------------cccHHHHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 431110 01135688999999999999999999999998
Q ss_pred cCCCCCCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548 344 TAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALM 379 (507)
Q Consensus 344 ~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 379 (507)
..+........+...++.|.+|.|++++|+.+..-+
T Consensus 454 ~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~ 489 (494)
T 3lij_A 454 LDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQKL 489 (494)
T ss_dssp CCSCCCHHHHHHHHTTCSSSSSSEEHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhh
Confidence 633333333446667889999999999999877654
No 464
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=98.26 E-value=1.3e-07 Score=81.97 Aligned_cols=142 Identities=17% Similarity=0.190 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcC
Q 010548 192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG 271 (507)
Q Consensus 192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~ 271 (507)
++..+.++++|..+|.+.+|.++.+|+....+.+ +...+..++..+...+. .+...++.|+++.|+.+........
T Consensus 6 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~l~~~~d---~~~~~~g~i~~~eF~~~~~~~~~~~ 81 (151)
T 1w7j_B 6 KDQLEEFKEAFELFDRVGDGKILYSQCGDVMRAL-GQNPTNAEVLKVLGNPK---SDELKSRRVDFETFLPMLQAVAKNR 81 (151)
T ss_dssp -----CHHHHHHHHCCSSSSEEESTTHHHHHHHT-TCCCCHHHHHHHTTCCC---HHHHTTCEEEHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhC---cCcCCCCcCcHHHHHHHHHHHhccC
Confidence 3445668899999999999999999999988864 66677766655543321 1111367899999998866432100
Q ss_pred CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CC
Q 010548 272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SP 349 (507)
Q Consensus 272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p 349 (507)
.+...+-++.+|+.||.|++|.|+.+|+..++..... .+
T Consensus 82 ---------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~ 122 (151)
T 1w7j_B 82 ---------------------------------------GQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTE 122 (151)
T ss_dssp ---------------------------------------------CCHHHHHTTCTTSSSEEEHHHHHHHHHHSSSCCCH
T ss_pred ---------------------------------------CCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCH
Confidence 0112234678999999999999999999999987632 22
Q ss_pred CCCCccccccccCCCCccchHhHHhhhh
Q 010548 350 WDEAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
.....+...++ |.+|.|++++|+..+.
T Consensus 123 ~~~~~~~~~~d-~~dg~i~~~eF~~~~~ 149 (151)
T 1w7j_B 123 EEVETVLAGHE-DSNGCINYEAFLKHIL 149 (151)
T ss_dssp HHHHHHHTTCC-CTTSEEEHHHHHHHTC
T ss_pred HHHHHHHHhcc-CCCCeEeHHHHHHHHh
Confidence 22334556677 9999999999998753
No 465
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=98.24 E-value=5.5e-06 Score=73.07 Aligned_cols=125 Identities=16% Similarity=0.170 Sum_probs=95.2
Q ss_pred HHHhhccCCCCCccChhhhHHHHhHhcC----CCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccc
Q 010548 200 RIFIICDHDMDGALNDAELNEFQVKCFN----APLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET 275 (507)
Q Consensus 200 ~~~~~~d~~~d~~l~~~el~~~~~~~~~----~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~ 275 (507)
+.|..+|.+.+|.++.+|+....+.+.. .+.+..+++.+.+.+.. ..++.|+++.|+.+...
T Consensus 5 ~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~-----~~~g~i~~~eF~~~~~~--------- 70 (167)
T 1gjy_A 5 YGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDR-----DMSGTMGFNEFKELWAV--------- 70 (167)
T ss_dssp HHHHHHHCCTTSCBCHHHHHHHHHHHTCSTTSCCCCHHHHHHHHHHHCT-----TCCSCBCHHHHHHHHHH---------
T ss_pred HHHHHHHcCCCCcCCHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHCC-----CCCCcCCHHHHHHHHHH---------
Confidence 4577889999999999999999888654 26778888777766532 23678999999998652
Q ss_pred hhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC--CCCC
Q 010548 276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEA 353 (507)
Q Consensus 276 ~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p--~~~~ 353 (507)
.+.++.+|+.||.|++|.|+.+|+..++......+ ....
T Consensus 71 ---------------------------------------~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~ 111 (167)
T 1gjy_A 71 ---------------------------------------LNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVN 111 (167)
T ss_dssp ---------------------------------------HHHHHHHHHHHCTTCCSEECHHHHHHHHHTTTCCCCHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHH
Confidence 14678899999999999999999999998753322 1122
Q ss_pred ccccccccCCCCccchHhHHhhhhhh
Q 010548 354 PYKDAAETTALGNLTLKGFVSKWALM 379 (507)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~w~~~ 379 (507)
.+...+ +.+|.|++++|+.++...
T Consensus 112 ~~~~~~--d~dg~i~~~eF~~~~~~~ 135 (167)
T 1gjy_A 112 SIAKRY--STSGKITFDDYIACCVKL 135 (167)
T ss_dssp HHHHHT--CBTTBEEHHHHHHHHHHH
T ss_pred HHHHHh--CcCCcCcHHHHHHHHHHH
Confidence 222333 789999999999988765
No 466
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.19 E-value=1.3e-06 Score=89.55 Aligned_cols=111 Identities=21% Similarity=0.237 Sum_probs=64.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC------CCC--C-C-C-CC---------------CCCC--ee-eCCcc------cC
Q 010548 12 GVRVVVVGDRGTGKSSLIAAAATE------SVP--E-K-V-PP---------------VHAP--TR-LPPDF------YP 56 (507)
Q Consensus 12 ~~kV~ivG~~~vGKSSLin~l~~~------~~~--~-~-~-~~---------------~~~~--~t-~~~~~------~~ 56 (507)
...|+|+|.+||||||+++.|... +.. . . . +. ..+. .+ -+..+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999999762 110 0 0 0 00 0000 00 00001 02
Q ss_pred CceEEEEEeCCCCccchh-hhH---H--hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCC-c-EEEEEecccCC
Q 010548 57 DRVPVTIIDTSSSLENKG-KLN---E--ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKV-P-IIVAGCKLDLR 128 (507)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~-~~~---~--~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~-p-iilv~NK~Dl~ 128 (507)
.++.+.|+||||...... ... . .+..+|.+++|+|+..+.. ... ....+. ... | ..+|.||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~-~~~~~~---~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI-QAKAFK---EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH-HHHHHH---TTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH-HHHHHh---hcccCCeEEEEeCCCCc
Confidence 567899999999764322 111 1 1236899999999876642 111 222222 235 6 88999999975
Q ss_pred C
Q 010548 129 G 129 (507)
Q Consensus 129 ~ 129 (507)
.
T Consensus 252 ~ 252 (432)
T 2v3c_C 252 A 252 (432)
T ss_dssp S
T ss_pred c
Confidence 3
No 467
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=98.18 E-value=2.3e-06 Score=89.54 Aligned_cols=141 Identities=18% Similarity=0.191 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhc---CCCCC----------HHHHHHHHHHHHhhccCCccCCCcchh
Q 010548 192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCF---NAPLQ----------PAEIVGVKRVVQEKQHDGVNDLGLTLS 258 (507)
Q Consensus 192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~---~~~l~----------~~~~~~l~~~i~~~~~~~~~~~~~~~~ 258 (507)
++..+.++++|..+|.|.+|.++.+|+..+....+ +...+ ..+++.+.+.+ ..+ .++.|+++
T Consensus 327 ~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---D~d--~dG~I~~~ 401 (486)
T 3mwu_A 327 LDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLL---DMD--GSGSIEYS 401 (486)
T ss_dssp HHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHTCCGGGHHHHTSSCHHHHHHHHHHHH---CTT--CCSSBCHH
T ss_pred HHHHHHHHHHHHHhCCCCCceeeHHHHHHHHHHhhhhhcccchhcccccchhhHHHHHHHHHHh---cCC--CCCcCcHH
Confidence 34557788999999999999999999977766542 33222 44444444443 222 36789999
Q ss_pred hHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHH
Q 010548 259 GFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAEL 338 (507)
Q Consensus 259 ~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el 338 (507)
.|+.+.... . .....+-++.+|+.||+|+||.|+.+|+
T Consensus 402 Ef~~~~~~~---~---------------------------------------~~~~~~~~~~~F~~~D~d~dG~Is~~El 439 (486)
T 3mwu_A 402 EFIASAIDR---T---------------------------------------ILLSRERMERAFKMFDKDGSGKISTKEL 439 (486)
T ss_dssp HHHHHHSCT---T---------------------------------------TTCCHHHHHHHHHHHCSSCSSSBCSSCC
T ss_pred HHHHHHHhh---h---------------------------------------ccchHHHHHHHHHHhCCCCCCcCCHHHH
Confidence 998763200 0 0001356889999999999999999999
Q ss_pred HhhhccCC--CCCCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548 339 EDLFLTAP--ESPWDEAPYKDAAETTALGNLTLKGFVSKWALM 379 (507)
Q Consensus 339 ~~~f~~~p--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 379 (507)
..++.... ..+...+.+...++.|.+|.|++++|+.++..+
T Consensus 440 ~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~ 482 (486)
T 3mwu_A 440 FKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQNF 482 (486)
T ss_dssp --------------------CCCCSSCSSSBCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh
Confidence 99998753 334455667777899999999999999876643
No 468
>3a8r_A Putative uncharacterized protein; EF-hand, membrane, oxidoreductase, transmembrane, calcium BI protein; 2.40A {Oryza sativa japonica group}
Probab=98.17 E-value=1.2e-06 Score=78.69 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=96.1
Q ss_pred HHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccc
Q 010548 196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET 275 (507)
Q Consensus 196 ~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~ 275 (507)
..+++.|..+| .+|.++.+|+.. +++...+...++.+.+.+...... .++.|+++.|+.+...+..
T Consensus 28 ~~~~~~F~~~D--~dG~I~~~el~~----~lg~~~~~~~~~~i~~~~d~~~~~--~~~~i~~~ef~~~~~~~~~------ 93 (179)
T 3a8r_A 28 AAVEKRFNQLQ--VDGVLLRSRFGK----CIGMDGSDEFAVQMFDSLARKRGI--VKQVLTKDELKDFYEQLTD------ 93 (179)
T ss_dssp HHHHHHHHHHC--BTTBEEGGGHHH----HHTCCSCHHHHHHHHHHHHHHHTC--CSSEECHHHHHHHHHHHHC------
T ss_pred HHHHHHHhccC--CCCCCcHHHHHH----HHCCCCcHHHHHHHHHHHHHhccC--CCCCcCHHHHHHHHHHHcC------
Confidence 35667788888 699999999987 346666777788888877654332 2457999999887442210
Q ss_pred hhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhc-cCCCC------
Q 010548 276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL-TAPES------ 348 (507)
Q Consensus 276 ~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~-~~p~~------ 348 (507)
..-.+-|+..|+.||.|+||.|+.+||..++. .....
T Consensus 94 ------------------------------------~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~~~~~~ 137 (179)
T 3a8r_A 94 ------------------------------------QGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIK 137 (179)
T ss_dssp ------------------------------------CCHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHTTHHHHHH
T ss_pred ------------------------------------CCHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccccccccc
Confidence 01235789999999999999999999999997 43221
Q ss_pred ---CCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548 349 ---PWDEAPYKDAAETTALGNLTLKGFVSKWALM 379 (507)
Q Consensus 349 ---p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 379 (507)
......+...++.|.+|.|++++|+.++...
T Consensus 138 ~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~ 171 (179)
T 3a8r_A 138 ERADEYTALIMEELDPTNLGYIEMEDLEALLLQS 171 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCCSEECHHHHHHHHC--
T ss_pred cchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhC
Confidence 1122334555688999999999999987653
No 469
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.15 E-value=3.1e-06 Score=86.25 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=36.0
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcCCCCCCC--------CCCccceeEEEEEEcCCCeEEEEEEecCCchhh
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY--------APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 485 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 485 (507)
-.++|+++|++|||||||+++|++..+.... .++.+.+.....+...+....+.+|||+|...+
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 4589999999999999999999998774221 112211111111122233457889999998653
No 470
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.15 E-value=8.4e-07 Score=84.89 Aligned_cols=57 Identities=25% Similarity=0.298 Sum_probs=36.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCcc
Q 010548 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71 (507)
Q Consensus 13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~ 71 (507)
++|+++|.+|||||||+|+|.+..... ....+++|........+..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~--~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS--VGAQPGITKGIQWFSLENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------------CCSCEEECTTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc--cCCCCCCccceEEEEeCCCEEEEECCCccc
Confidence 699999999999999999999877432 222334443322222234689999999653
No 471
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.14 E-value=1e-06 Score=86.12 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=32.1
Q ss_pred ceEEEEEecCCCCchHHHHHHHhcC-CCCCCC--------CCCccceeEEEEEEcCCCeEEEEEEecCCc
Q 010548 422 NVFRCLLFGPQNAGKSALLNSFLER-PFSENY--------APTTGEQYAVNVVDQPGGNKKTLILQEIPE 482 (507)
Q Consensus 422 ~~~kv~ivG~~~vGKSsll~~l~~~-~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 482 (507)
..++|+++|++|||||||++++.+. .+...+ .++...+.....+...+....+.+|||+|.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~ 86 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY 86 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC--
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhh
Confidence 4589999999999999999998876 443322 111111111112222334568899999998
No 472
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Probab=98.13 E-value=3.4e-06 Score=70.81 Aligned_cols=132 Identities=20% Similarity=0.209 Sum_probs=94.7
Q ss_pred HHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchh
Q 010548 198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW 277 (507)
Q Consensus 198 l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w 277 (507)
++++|..+|.+.+|.++.+|+....... +...+..++..+.+.+.. ..++.|+++.|+.+...+.
T Consensus 2 l~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~D~-----~~~g~i~~~ef~~~~~~~~--------- 66 (134)
T 1jfj_A 2 AEALFKEIDVNGDGAVSYEEVKAFVSKK-RAIKNEQLLQLIFKSIDA-----DGNGEIDQNEFAKFYGSIQ--------- 66 (134)
T ss_dssp HHHHHHHHCTTCSSEEEHHHHHHHHHTT-CCSSHHHHHHHHHHHHCS-----SCCSEEEHHHHHHHTTCSS---------
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHcC-----CCCCeEcHHHHHHHHHHhc---------
Confidence 5678999999999999999999887764 456666666666555432 2356799999998732100
Q ss_pred HHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCcccc
Q 010548 278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKD 357 (507)
Q Consensus 278 ~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~~~ 357 (507)
. ..+ ....+-++.+|+.+|.|++|.|+.+|+..++....... ...+..
T Consensus 67 ---------------~--------------~~~-~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~--~~~~~~ 114 (134)
T 1jfj_A 67 ---------------G--------------QDL-SDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEK--VAEQVM 114 (134)
T ss_dssp ---------------C--------------CSS-HHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHTTTTCHH--HHHHHH
T ss_pred ---------------c--------------ccc-CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHhCHHH--HHHHHH
Confidence 0 000 11223389999999999999999999999998654322 333445
Q ss_pred ccccCCCCccchHhHHhhh
Q 010548 358 AAETTALGNLTLKGFVSKW 376 (507)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~w 376 (507)
.++.|.+|.|++++|+...
T Consensus 115 ~~D~~~dg~i~~~ef~~~l 133 (134)
T 1jfj_A 115 KADANGDGYITLEEFLEFS 133 (134)
T ss_dssp HHHCSSSSEEEHHHHHHHH
T ss_pred HhCCCCCCcEeHHHHHHHh
Confidence 5678999999999998753
No 473
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=98.11 E-value=7.5e-06 Score=74.45 Aligned_cols=127 Identities=17% Similarity=0.188 Sum_probs=96.3
Q ss_pred HHHHHHhhccCCCCCccChhhhHHHHhHhcC----CCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCC
Q 010548 197 ALKRIFIICDHDMDGALNDAELNEFQVKCFN----APLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR 272 (507)
Q Consensus 197 ~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~----~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~ 272 (507)
.+++ |..+|.+.+|.++.+|+....+.+.. ..++..+++.+.+.+.. ..++.|+++.|+.+...
T Consensus 34 ~l~~-F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~-----d~~g~i~~~eF~~~~~~------ 101 (198)
T 1juo_A 34 PLYG-YFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDR-----DMSGTMGFNEFKELWAV------ 101 (198)
T ss_dssp TTHH-HHHHHHTTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCT-----TCSSCEEHHHHHHHHHH------
T ss_pred HHHH-HHHHhCCCCCcCCHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhCC-----CCCCeECHHHHHHHHHH------
Confidence 3566 88889999999999999999888654 26778777777766532 23668999999998552
Q ss_pred ccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC--C
Q 010548 273 LETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--W 350 (507)
Q Consensus 273 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p--~ 350 (507)
.+.++.+|+.||.|++|.|+.+|+..++......+ .
T Consensus 102 ------------------------------------------~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~ 139 (198)
T 1juo_A 102 ------------------------------------------LNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQ 139 (198)
T ss_dssp ------------------------------------------HHHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHH
T ss_pred ------------------------------------------HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHH
Confidence 14678899999999999999999999998753221 1
Q ss_pred CCCccccccccCCCCccchHhHHhhhhhh
Q 010548 351 DEAPYKDAAETTALGNLTLKGFVSKWALM 379 (507)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 379 (507)
....+...+ |.+|.|++++|+.++..+
T Consensus 140 ~~~~l~~~~--d~dg~i~~~eF~~~~~~~ 166 (198)
T 1juo_A 140 AVNSIAKRY--STNGKITFDDYIACCVKL 166 (198)
T ss_dssp HHHHHHHHT--CSSSSEEHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCeEcHHHHHHHHHHH
Confidence 112222223 889999999999988765
No 474
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A
Probab=98.10 E-value=7.6e-06 Score=77.61 Aligned_cols=147 Identities=18% Similarity=0.218 Sum_probs=101.8
Q ss_pred HHHHHHHHhhccCCCCCccChhhhHHHHhHhc---CCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcC
Q 010548 195 VRALKRIFIICDHDMDGALNDAELNEFQVKCF---NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG 271 (507)
Q Consensus 195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~---~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~ 271 (507)
...++.+|..+|.+.+|.++.+|+......+. +..++..+++.+.+.+-+.+. ...++.|+++.|+.+....
T Consensus 102 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~d-~~~dg~i~~~ef~~~~~~~---- 176 (263)
T 2f33_A 102 CEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFD-SNNDGKLELTEMARLLPVQ---- 176 (263)
T ss_dssp HHHHHHHHTTSSTTTCSSBCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTC-SSSSSCBCHHHHHHHSCTT----
T ss_pred HHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcC-CCCCCeEcHHHHHHHHHHH----
Confidence 34578899999999999999999999988875 788899888875443333321 1236779999998874310
Q ss_pred CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC------
Q 010548 272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA------ 345 (507)
Q Consensus 272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~------ 345 (507)
+... ++. .. .....+-++.+|+.||.|++|.|+.+|+..++...
T Consensus 177 --~~~~--~~~---------~~-----------------~~~~~~~~~~~F~~~D~d~~G~is~~El~~~l~~~~~~~~~ 226 (263)
T 2f33_A 177 --ENFL--LKF---------QG-----------------IKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQ 226 (263)
T ss_dssp --TCSH--HHH---------HH-----------------TCCCHHHHHHHHHHHCCSSSSCEEHHHHHHHHHHHHHHCTT
T ss_pred --HHHH--HHh---------cC-----------------cchHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHhcCC
Confidence 0000 000 00 00123568899999999999999999999998753
Q ss_pred CCCCCCCCccccc-cccCCCCccchHhHHhhh
Q 010548 346 PESPWDEAPYKDA-AETTALGNLTLKGFVSKW 376 (507)
Q Consensus 346 p~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~w 376 (507)
+..+.....+... ++.|.+|.|++++|+..-
T Consensus 227 ~~~~~e~~~~~~~~~D~d~dG~i~~~EF~~~~ 258 (263)
T 2f33_A 227 ELDINNISTYKKNIMALSDGGKLYRTDLALIL 258 (263)
T ss_dssp TCCTTTHHHHHHHHHTTSBTTEECGGGTHHHH
T ss_pred CCCHHHHHHHHHHhhccCCCCeEcHHHHHHHH
Confidence 2233333334443 588999999999998753
No 475
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=98.10 E-value=3.2e-06 Score=88.29 Aligned_cols=139 Identities=21% Similarity=0.208 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCC---CCC-------HHHHHHHHHHHHhhccCCccCCCcchhhHH
Q 010548 192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA---PLQ-------PAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261 (507)
Q Consensus 192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~---~l~-------~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~ 261 (507)
++..+.++++|..+|.|.+|.++.+|+......++.. ..+ ..+++.+.+.+ ..+ .++.|+++.|+
T Consensus 331 ~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---D~d--~~g~i~~~Ef~ 405 (484)
T 3nyv_A 331 QDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAV---DFD--KNGYIEYSEFV 405 (484)
T ss_dssp HHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHC----CGGGCSHHHHHHHHHHHHHHH---TCC--TTSEEEHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCCceEeHHHHHHHHHHHhhhcccccccccccccHHHHHHHHHHh---CCC--CCCeEeHHHHH
Confidence 3445678889999999999999999997776665432 222 33344433333 222 36789999999
Q ss_pred HHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhh
Q 010548 262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDL 341 (507)
Q Consensus 262 ~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~ 341 (507)
.+..... .....+.++.+|+.||+|+||.|+.+|+..+
T Consensus 406 ~~~~~~~------------------------------------------~~~~~~~~~~~F~~~D~d~dG~I~~~El~~~ 443 (484)
T 3nyv_A 406 TVAMDRK------------------------------------------TLLSRERLERAFRMFDSDNSGKISSTELATI 443 (484)
T ss_dssp HHHHHHH------------------------------------------HHHHHHHHHHHHHHHCTTCCSEEEHHHHHHH
T ss_pred HHHHhcc------------------------------------------ccCcHHHHHHHHHHHCCCCCCcCCHHHHHHH
Confidence 8854321 0123457889999999999999999999999
Q ss_pred hccCCCCCCCCCccccccccCCCCccchHhHHhhhh
Q 010548 342 FLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 342 f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
+...+......+.+...++.|.+|.|++++|+.+-.
T Consensus 444 l~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~ 479 (484)
T 3nyv_A 444 FGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLL 479 (484)
T ss_dssp HHHTTCCHHHHHHHHHHHCTTCCSEEEHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 987322222234455667889999999999987543
No 476
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=98.10 E-value=1.1e-05 Score=70.87 Aligned_cols=124 Identities=14% Similarity=0.111 Sum_probs=93.8
Q ss_pred HHhhccCCCCCccChhhhHHHHhHhcC----CCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccch
Q 010548 201 IFIICDHDMDGALNDAELNEFQVKCFN----APLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETT 276 (507)
Q Consensus 201 ~~~~~d~~~d~~l~~~el~~~~~~~~~----~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~ 276 (507)
.|..+|.+.+|.++.+|+....+.+.. ...+..+++.+.+.+.. ..++.|+++.|+.+...
T Consensus 4 ~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~-----~~~g~i~~~eF~~~~~~---------- 68 (165)
T 1k94_A 4 TYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDR-----DHTGKMGFNAFKELWAA---------- 68 (165)
T ss_dssp HHHHHHHGGGTSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHCT-----TCSSCBCHHHHHHHHHH----------
T ss_pred HHHHHhCCCCCcCCHHHHHHHHHHhccccCCCCCCHHHHHHHHHHhCC-----CCCCcCCHHHHHHHHHH----------
Confidence 477889999999999999999887654 26777777777666532 23678999999998552
Q ss_pred hHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC--CCCCc
Q 010548 277 WAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAP 354 (507)
Q Consensus 277 w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p--~~~~~ 354 (507)
.+.++.+|+.||.|++|.|+.+|+..++......+ .....
T Consensus 69 --------------------------------------~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~ 110 (165)
T 1k94_A 69 --------------------------------------LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTT 110 (165)
T ss_dssp --------------------------------------HHHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHhCCCCCceECHHHHHHHHHHhCCCCCHHHHHH
Confidence 14578899999999999999999999998754322 11222
Q ss_pred cccccccCCCCccchHhHHhhhhhh
Q 010548 355 YKDAAETTALGNLTLKGFVSKWALM 379 (507)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~w~~~ 379 (507)
+...+ +.+|.|++++|+.+....
T Consensus 111 ~~~~~--d~dg~i~~~eF~~~~~~~ 133 (165)
T 1k94_A 111 IVKRY--SKNGRIFFDDYVACCVKL 133 (165)
T ss_dssp HHHHH--CBTTBCBHHHHHHHHHHH
T ss_pred HHHHh--CCCCeEcHHHHHHHHHHH
Confidence 22223 889999999999987665
No 477
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.09 E-value=2.9e-05 Score=79.25 Aligned_cols=141 Identities=13% Similarity=0.061 Sum_probs=80.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc------CCCC-CCCCCCCC-------------Cee-eCCc--c-------------
Q 010548 11 TGVRVVVVGDRGTGKSSLIAAAAT------ESVP-EKVPPVHA-------------PTR-LPPD--F------------- 54 (507)
Q Consensus 11 ~~~kV~ivG~~~vGKSSLin~l~~------~~~~-~~~~~~~~-------------~~t-~~~~--~------------- 54 (507)
+...|+++|.+||||||++..|.. .+.. ....+..+ +.. .... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999873 2210 00000000 000 0000 0
Q ss_pred cCCceEEEEEeCCCCccchh-hhH-----HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCC
Q 010548 55 YPDRVPVTIIDTSSSLENKG-KLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128 (507)
Q Consensus 55 ~~~~~~~~i~Dt~G~~~~~~-~~~-----~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 128 (507)
...++.+.|+||+|...... ... .....+|.+++|+|++.+..... ....+... -.+..+|.||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~----~a~~f~~~--~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN----QALAFKEA--TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH----HHHHHHHS--CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH----HHHHHHhh--CCCeEEEEECCCCc
Confidence 01347899999999653222 111 22346899999999987644322 22333333 24667999999986
Q ss_pred CCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548 129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (507)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 167 (507)
.. ......+....+. |+..++. |++++++
T Consensus 253 ~~------gG~~ls~~~~~g~--PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 253 AK------GGGALSAVAATGA--PIKFIGT--GEKIDDI 281 (443)
T ss_dssp SS------HHHHHHHHHTTCC--CEEEEEC--SSSTTCE
T ss_pred cc------ccHHHHHHHHHCC--CEEEEEc--CCChHHh
Confidence 42 1223334444443 5666664 8888765
No 478
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=98.08 E-value=6.6e-06 Score=75.47 Aligned_cols=165 Identities=15% Similarity=0.144 Sum_probs=103.8
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (507)
Q Consensus 190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~ 269 (507)
..++..+.+.++|..+|.+.+|.++.+|+..... .+..... +.+. ..... ..++.|+++.|+.+...+..
T Consensus 23 ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~~~--lg~~~~~---~~l~---~~~d~--~~~g~i~~~EF~~~~~~~~~ 92 (208)
T 2ct9_A 23 FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPE--LAINPLG---DRII---NAFFS--EGEDQVNFRGFMRTLAHFRP 92 (208)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSSEECTGGGGGCHH--HHTSTTH---HHHH---HTTSC--TTCSCEEHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHH--cCCCCcH---HHHH---HHHcC--CCCCcCcHHHHHHHHHhhcc
Confidence 3455677899999999999999999999987532 2222222 2222 22222 23678999999988653321
Q ss_pred cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC
Q 010548 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP 349 (507)
Q Consensus 270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p 349 (507)
... ..-|... +. ........+.++.+|+.||.|++|.|+.+|+..++...-+.+
T Consensus 93 ~~~-~~~~~~~--------------~~-----------~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~ 146 (208)
T 2ct9_A 93 IED-NEKSKDV--------------NG-----------PEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVN 146 (208)
T ss_dssp CC-------------------------------------CCTTSHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHSCTT
T ss_pred ccc-hhhhccc--------------cc-----------ccccccHHHHHHHHHHHHCCCCCCEEcHHHHHHHHHHHhCCC
Confidence 100 0012100 00 001123567899999999999999999999999998642222
Q ss_pred CCC---Ccc----ccccccCCCCccchHhHHhhhhhhhhcCHHHHHHHH
Q 010548 350 WDE---APY----KDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANL 391 (507)
Q Consensus 350 ~~~---~~~----~~~~~~~~~~~~~~~~~~~~w~~~~~~d~~~~l~~l 391 (507)
... ..+ ...++.|.+|.|++++|+....... +.....++++
T Consensus 147 ~s~~~~~~l~~~~~~~~D~d~dG~Is~~EF~~~~~~~~-~~~~~~~~~~ 194 (208)
T 2ct9_A 147 ISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVD-VEQKMSIRFL 194 (208)
T ss_dssp CCHHHHHHHHHHHHHHHCSSSSSSEEHHHHHHTTTTSC-GGGSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccC-hHHHhhHHHH
Confidence 221 222 4557889999999999999776544 4444455544
No 479
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.07 E-value=3.7e-06 Score=89.00 Aligned_cols=62 Identities=19% Similarity=0.071 Sum_probs=42.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc------cCCceEEEEEeCCCCcc
Q 010548 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF------YPDRVPVTIIDTSSSLE 71 (507)
Q Consensus 10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~------~~~~~~~~i~Dt~G~~~ 71 (507)
.+..+|+|+|.||||||||+|+|++......++++..+.|..... ...+..+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 456789999999999999999999977322333333333322211 23467899999999764
No 480
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=98.04 E-value=1.7e-05 Score=74.11 Aligned_cols=135 Identities=17% Similarity=0.238 Sum_probs=94.9
Q ss_pred HHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCc
Q 010548 194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL 273 (507)
Q Consensus 194 ~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~ 273 (507)
..+.+.+.|.. .+.+|.++.+|+.......+........++.+.+.+. . ..++.|+++.|+.+...+...
T Consensus 65 ei~~l~~~F~~--~d~~G~Is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D---~--d~~G~I~~~Ef~~~l~~~~~~--- 134 (229)
T 3dd4_A 65 ELQILYRGFKN--ECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFD---T--DHNGAVSFEDFIKGLSILLRG--- 134 (229)
T ss_dssp HHHHHHHHHHT--TCCSCCCCHHHHHHHHHHHSCSSSHHHHHHHHHHTTC---S--SCCSSCCHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHh--hCCCCCcCHHHHHHHHHHHCCCCCcHHHHHHHHHHcC---C--CCCCeEeHHHHHHHHHHHcCC---
Confidence 33445555544 5678999999999998888776666655555544432 2 246789999999986654311
Q ss_pred cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC--------
Q 010548 274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA-------- 345 (507)
Q Consensus 274 ~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~-------- 345 (507)
...+.++.+|+.||.|+||.|+.+|+..++...
T Consensus 135 ---------------------------------------~~~~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~~~~~ 175 (229)
T 3dd4_A 135 ---------------------------------------TVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCT 175 (229)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHCTTCSSCCBHHHHHHHHHHHHHHCC---
T ss_pred ---------------------------------------ChHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHHHHhcccc
Confidence 113578899999999999999999999998752
Q ss_pred -C--C---CCCCCCccccccccCCCCccchHhHHhhhh
Q 010548 346 -P--E---SPWDEAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 346 -p--~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
| + .......+...++.|.+|.|++++|+....
T Consensus 176 ~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~ 213 (229)
T 3dd4_A 176 YPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQ 213 (229)
T ss_dssp --------CCTHHHHHHHHHCSSCSSBCCHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHhcCCCCCcEeHHHHHHHHH
Confidence 1 1 111223344556889999999999998665
No 481
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=98.03 E-value=1.1e-05 Score=72.04 Aligned_cols=119 Identities=8% Similarity=0.008 Sum_probs=87.5
Q ss_pred cCCCCCccChhhhHHHHhHhc-----CCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHH
Q 010548 206 DHDMDGALNDAELNEFQVKCF-----NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVL 280 (507)
Q Consensus 206 d~~~d~~l~~~el~~~~~~~~-----~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l 280 (507)
..+.+|.++.+||....+.++ +...+..+++.+...+.. + .++.|+++.|+.++..
T Consensus 14 ~~~~dG~I~~~EL~~~l~~l~~~~~~g~~~~~~~~~~l~~~~D~---d--~~G~I~f~EF~~~~~~-------------- 74 (174)
T 2i7a_A 14 LVPRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMEL---K--VNGRLDQEEFARLWKR-------------- 74 (174)
T ss_dssp SCC-CCCEEHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHCS---S--CSSEECHHHHHHHHHH--------------
T ss_pred cCCCCCcCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHCC---C--CCCcCCHHHHHHHHHH--------------
Confidence 456899999999999999874 456777777766665532 2 3567999999988542
Q ss_pred hhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC----CCCC--CCCCc
Q 010548 281 RKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA----PESP--WDEAP 354 (507)
Q Consensus 281 ~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~----p~~p--~~~~~ 354 (507)
.+.++..|+.|| |++|.|+.+||..++... ...+ .....
T Consensus 75 ----------------------------------~~~l~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~ 119 (174)
T 2i7a_A 75 ----------------------------------LVHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHL 119 (174)
T ss_dssp ----------------------------------HHHHHHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHH
Confidence 135778999999 999999999999999876 4322 11233
Q ss_pred cccccccCCCCccchHhHHhhhhhh
Q 010548 355 YKDAAETTALGNLTLKGFVSKWALM 379 (507)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~w~~~ 379 (507)
+...++ +.+|.|++++|+.++...
T Consensus 120 l~~~~d-d~dG~I~~~EF~~~~~~~ 143 (174)
T 2i7a_A 120 VTLRYS-DSVGRVSFPSLVCFLMRL 143 (174)
T ss_dssp HHHHHS-CTTSEECHHHHHHHHHHH
T ss_pred HHHHHc-CCCCeEcHHHHHHHHHHH
Confidence 444456 889999999999987654
No 482
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=98.02 E-value=3e-06 Score=69.11 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=74.2
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCC
Q 010548 227 NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306 (507)
Q Consensus 227 ~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~ 306 (507)
+..++..+++.+.+.+. .++.|+++.|+.+...
T Consensus 4 ~~~~~~~ei~~~~~~~D-------~~g~i~~~eF~~~~~~---------------------------------------- 36 (109)
T 3fs7_A 4 TDILSAKDIESALSSCQ-------AADSFNYKSFFSTVGL---------------------------------------- 36 (109)
T ss_dssp GGTSCHHHHHHHHHHTC-------STTCCCHHHHHHHHTC----------------------------------------
T ss_pred cCcCCHHHHHHHHHhcC-------CCCcCcHHHHHHHHhc----------------------------------------
Confidence 34566677777766663 3678999999988431
Q ss_pred ceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--CCCCC---CCccccccccCCCCccchHhHHhhhh
Q 010548 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--ESPWD---EAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 307 ~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
+....+-++.+|+.||.|++|.|+.+|+..++.... +.+.. ...+...++.|.+|.|++++|+.+|.
T Consensus 37 ----~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~EF~~~~~ 108 (109)
T 3fs7_A 37 ----SSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSLVK 108 (109)
T ss_dssp ----TTCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHT
T ss_pred ----CCCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 011246789999999999999999999999998762 33322 23345567889999999999999875
No 483
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A
Probab=98.01 E-value=7.7e-06 Score=77.98 Aligned_cols=151 Identities=17% Similarity=0.204 Sum_probs=104.0
Q ss_pred HHHHHHHHhhccCCCCCccChhhhHHHHhH---hcCC--CCCHHHHHHHHHHH-HhhccCCccCCCcchhhHHHHHHHHH
Q 010548 195 VRALKRIFIICDHDMDGALNDAELNEFQVK---CFNA--PLQPAEIVGVKRVV-QEKQHDGVNDLGLTLSGFLFLHALFI 268 (507)
Q Consensus 195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~---~~~~--~l~~~~~~~l~~~i-~~~~~~~~~~~~~~~~~f~~l~~~~~ 268 (507)
...++++|..+|.+.+|.++.+|+....+. .++. .++..+++.+.+.+ ...-.+ .++.|+++.|+.+..-..
T Consensus 10 ~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~lg~~~~~~~~~~~~~~~~~f~~~D~d--~~g~i~~~Ef~~~~~~~~ 87 (272)
T 2be4_A 10 AAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDAT--FDGRLQIEELANMILPQE 87 (272)
T ss_dssp HHHHHHHHHHHCTTCCSEEEGGGHHHHHHHHHHHHSTTSCCCHHHHHHHHHHHSCHHHHT--CCSEEEHHHHHHHHSCHH
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCC--CCCcEeHHHHHHHHhhhh
Confidence 346889999999999999999999999884 5566 88888888877554 222222 256799999998832110
Q ss_pred HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC---
Q 010548 269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA--- 345 (507)
Q Consensus 269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~--- 345 (507)
.+ .=..++..+. ....+-++.+|+.||.|++|.|+.+|+..++...
T Consensus 88 ~~-----~~~~~~~~~~--------------------------~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~ 136 (272)
T 2be4_A 88 EN-----FLLIFRREAP--------------------------LDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQ 136 (272)
T ss_dssp HH-----HHHHHHHHSC--------------------------CCCHHHHHHHHHHHCTTCCSEEEGGGHHHHHHHHHHH
T ss_pred HH-----HHHHHhhccC--------------------------cccHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHh
Confidence 00 0000111110 0113458899999999999999999999998753
Q ss_pred CCCCCCCC-------ccccccccCCCCccchHhHHhhhhh
Q 010548 346 PESPWDEA-------PYKDAAETTALGNLTLKGFVSKWAL 378 (507)
Q Consensus 346 p~~p~~~~-------~~~~~~~~~~~~~~~~~~~~~~w~~ 378 (507)
.+.+.... .+...++.+.+|.|++++|++.+..
T Consensus 137 ~g~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~ 176 (272)
T 2be4_A 137 HKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILAL 176 (272)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHCSSCSSEEEHHHHGGGSCC
T ss_pred cCCCCCHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHHhh
Confidence 12222211 1445578899999999999998764
No 484
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=97.99 E-value=4.6e-06 Score=67.84 Aligned_cols=99 Identities=14% Similarity=0.213 Sum_probs=72.7
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCC
Q 010548 227 NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306 (507)
Q Consensus 227 ~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~ 306 (507)
+. .+..+++.+.+.+. .++.|+++.|+.+...
T Consensus 4 G~-~~~~e~~~l~~~~d-------~~g~i~~~eF~~~~~~---------------------------------------- 35 (108)
T 2pvb_A 4 AG-LKDADVAAALAACS-------AADSFKHKEFFAKVGL---------------------------------------- 35 (108)
T ss_dssp TT-SCHHHHHHHHHHTC-------STTCCCHHHHHHHHTG----------------------------------------
T ss_pred CC-CCHHHHHHHHHHhC-------CCCcCcHHHHHHHHhC----------------------------------------
Confidence 44 66777777776654 3568999999988431
Q ss_pred ceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--CCCCC---CCccccccccCCCCccchHhHHhhhh
Q 010548 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--ESPWD---EAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 307 ~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
+....+.++.+|+.||.|++|.|+.+|+..++.... +.+.. ...+...++.+.+|.|++++|+.++.
T Consensus 36 ----~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 107 (108)
T 2pvb_A 36 ----ASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMIK 107 (108)
T ss_dssp ----GGSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred ----ChhHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 011256789999999999999999999999998762 22222 23344556789999999999998764
No 485
>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A
Probab=97.98 E-value=1.3e-05 Score=74.72 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=96.5
Q ss_pred ccHHHHHHHHHHHhhccCC--CCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548 190 LKPRCVRALKRIFIICDHD--MDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF 267 (507)
Q Consensus 190 ~~~~~~~~l~~~~~~~d~~--~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~ 267 (507)
..+...+.+.+.|..+|.+ .+|.++.+|+...... ........++.+.+.+. .+ .++.|+++.|+.+...+
T Consensus 42 ls~~ei~~l~~~F~~~D~d~~~~G~I~~~El~~~l~~--~~~~~~~~~~~~f~~~D---~d--~dG~I~~~Ef~~~~~~~ 114 (226)
T 2zfd_A 42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK--TNKKESLFADRVFDLFD---TK--HNGILGFEEFARALSVF 114 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTSSSCSSSBCHHHHHHHHHS--CSSCCCHHHHHHHHHHC---SS--CSSSBCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCCeEcHHHHHHHHhc--cCcccHHHHHHHHHHHc---CC--CCCcCcHHHHHHHHHHH
Confidence 3455677889999999999 9999999999988876 22223333344444432 22 36679999999876532
Q ss_pred HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhcc---
Q 010548 268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT--- 344 (507)
Q Consensus 268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~--- 344 (507)
.. .....+-++.+|+.||.|++|.|+.+|+..++..
T Consensus 115 ~~-----------------------------------------~~~~~~~l~~~F~~~D~d~~G~Is~~E~~~~l~~~~~ 153 (226)
T 2zfd_A 115 HP-----------------------------------------NAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLA 153 (226)
T ss_dssp ST-----------------------------------------TSCHHHHHHHHHHHHCTTSSSSEEHHHHHHHHHHHHH
T ss_pred cc-----------------------------------------CCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH
Confidence 10 0113456889999999999999999999999952
Q ss_pred CCCCCCC---CCccc----cccccCCCCccchHhHHhhhh
Q 010548 345 APESPWD---EAPYK----DAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 345 ~p~~p~~---~~~~~----~~~~~~~~~~~~~~~~~~~w~ 377 (507)
..+.+.. ...+. ..++.|.+|.|++++|+....
T Consensus 154 ~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~EF~~~~~ 193 (226)
T 2zfd_A 154 ESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVL 193 (226)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 1122222 11122 256789999999999998654
No 486
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.96 E-value=1.2e-05 Score=81.84 Aligned_cols=83 Identities=22% Similarity=0.115 Sum_probs=54.6
Q ss_pred EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchh----hhhhcc-chhhcccc
Q 010548 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKILS-NKEALASC 498 (507)
Q Consensus 424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----~~~~~~-~~~~~~~a 498 (507)
-.|++||.+|||||||++++++........+..+.......+... ....+.+||++|... +..+.. ....++++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~-~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEec-CcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 358999999999999999999876533333333333444455555 346788999999732 111110 01234679
Q ss_pred cEEEEEEeC
Q 010548 499 DVTIFVYDR 507 (507)
Q Consensus 499 d~vilv~D~ 507 (507)
+.++.|+|+
T Consensus 237 ~~lL~vvDl 245 (416)
T 1udx_A 237 RVLLYVLDA 245 (416)
T ss_dssp SEEEEEEET
T ss_pred HhhhEEeCC
Confidence 999999995
No 487
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=97.96 E-value=8.7e-06 Score=74.32 Aligned_cols=138 Identities=17% Similarity=0.132 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhhccCC-CCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHc
Q 010548 192 PRCVRALKRIFIICDHD-MDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK 270 (507)
Q Consensus 192 ~~~~~~l~~~~~~~d~~-~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~ 270 (507)
.-..+.++++|..+|.+ .+|.++.+|+......... +.+...++.+.+.+.. ..++.|+++.|+.+...+..
T Consensus 18 ~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~-~~~~~~~~~~f~~~D~-----d~~G~i~~~Ef~~~~~~~~~- 90 (204)
T 1jba_A 18 AADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDN-EEATQYVEAMFRAFDT-----NGDNTIDFLEYVAALNLVLR- 90 (204)
T ss_dssp HHHHHHHHHHHHHHHSSSTTCCEEHHHHHHHHHCCSS-STTHHHHHHHHHHHCC-----SSSSEECHHHHHHHHHHHSS-
T ss_pred CCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHhcC-CCcHHHHHHHHHHHcC-----CCCCeEeHHHHHHHHHHHcc-
Confidence 34456678889999999 8999999999999887544 6677777666665532 23567999999998653210
Q ss_pred CCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC-----
Q 010548 271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA----- 345 (507)
Q Consensus 271 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~----- 345 (507)
. ...+-++.+|+.||.|++|.|+.+|+..++...
T Consensus 91 --~---------------------------------------~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~g 129 (204)
T 1jba_A 91 --G---------------------------------------TLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKK 129 (204)
T ss_dssp --C---------------------------------------CCTHHHHHHHHHHCSSCSSCBCHHHHHHHHHHHHHHHH
T ss_pred --C---------------------------------------CHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhC
Confidence 0 012457889999999999999999999998753
Q ss_pred -CCCCC---------C----CCccccccccCCCCccchHhHHhhhh
Q 010548 346 -PESPW---------D----EAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 346 -p~~p~---------~----~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
+..+. . ...+...++.|.+|.|++++|+....
T Consensus 130 ~~~~~~~~~~~g~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~ 175 (204)
T 1jba_A 130 ACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGAR 175 (204)
T ss_dssp HSSCCTTSSTTTCCCCHHHHHHHHHHHHCCSCCSCBCHHHHHHHHT
T ss_pred CCCccccccccCchhhHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 11110 1 12233456789999999999998764
No 488
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=97.95 E-value=6.5e-06 Score=66.32 Aligned_cols=71 Identities=17% Similarity=0.303 Sum_probs=59.1
Q ss_pred CCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CCCCCCccccccccCCCCccchHhHHhh
Q 010548 305 DQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SPWDEAPYKDAAETTALGNLTLKGFVSK 375 (507)
Q Consensus 305 ~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (507)
....+|++.-.+-|+..|+.||+|++|.|+.+||..++..... .......+...++.|.+|.|++++|+++
T Consensus 25 ~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D~d~dG~I~~~EF~~~ 97 (100)
T 2lv7_A 25 QRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTL 97 (100)
T ss_dssp CSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHCSSCSSSBCHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCeEeHHHHHHH
Confidence 3456899999999999999999999999999999999987433 3344455667788999999999999874
No 489
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=97.94 E-value=7.7e-06 Score=80.72 Aligned_cols=129 Identities=16% Similarity=0.204 Sum_probs=99.5
Q ss_pred HHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHH-HHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCC
Q 010548 194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVG-VKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR 272 (507)
Q Consensus 194 ~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~-l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~ 272 (507)
....+..+|..+|.+.+|.++.+|+.... .+..++..++.. +...+. + ..++.|++++|+.++....
T Consensus 186 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l---~g~~~~~~ei~~~l~~~~D---~--d~dG~Is~~EF~~~l~~~~---- 253 (323)
T 1ij5_A 186 DLAALVADFRKIDTNSNGTLSRKEFREHF---VRLGFDKKSVQDALFRYAD---E--DESDDVGFSEYVHLGLCLL---- 253 (323)
T ss_dssp HHHTSCCCHHHHCTTCCSEECHHHHHHHH---HHTTCCCHHHHHHHHHHHC---T--TCSSCEEHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHCCCCCCcCcHHHHHHHH---cCCCCCHHHHHHHHHHHhc---C--CCCCEEeHHHHHHHHHHHH----
Confidence 44567778899999999999999999888 566777777777 665553 2 2367899999999866332
Q ss_pred ccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhh-ccCC--CCC
Q 010548 273 LETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLF-LTAP--ESP 349 (507)
Q Consensus 273 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f-~~~p--~~p 349 (507)
.+..+|+.||.|++|.|+.+|+..++ .... ..+
T Consensus 254 --------------------------------------------~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~ls~ 289 (323)
T 1ij5_A 254 --------------------------------------------VLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESAR 289 (323)
T ss_dssp --------------------------------------------HHHHHHHHTCSSSCSSEEHHHHHHHHHHTTCCGGGC
T ss_pred --------------------------------------------HHHHHHHHhCCCCCCCccHHHHHHHHHHHcCCCCCH
Confidence 46788999999999999999999999 6542 233
Q ss_pred CCCCccccccccCCCCccchHhHHhhhhh
Q 010548 350 WDEAPYKDAAETTALGNLTLKGFVSKWAL 378 (507)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 378 (507)
.....+...++.|.+|.|++++|+..+.-
T Consensus 290 ~e~~~l~~~~D~d~dG~Is~~EF~~~~~~ 318 (323)
T 1ij5_A 290 KKFEHQFSVVDVDDSKSLSYQEFVMLVLL 318 (323)
T ss_dssp STHHHHHHHHTTTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcEeHHHHHHHHHH
Confidence 33344556678899999999999987653
No 490
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=97.94 E-value=2.4e-06 Score=69.72 Aligned_cols=99 Identities=16% Similarity=0.227 Sum_probs=72.0
Q ss_pred CCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCc
Q 010548 228 APLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQS 307 (507)
Q Consensus 228 ~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~ 307 (507)
..++..+++.+.+.+. .++.|+++.|+.+..+
T Consensus 5 ~~~t~~e~~~~~~~~d-------~~g~i~~~ef~~~~~~----------------------------------------- 36 (110)
T 1pva_A 5 DLLKADDIKKALDAVK-------AEGSFNHKKFFALVGL----------------------------------------- 36 (110)
T ss_dssp HHSCHHHHHHHHHHTC-------STTCCCHHHHHHHHTC-----------------------------------------
T ss_pred ccCCHHHHHHHHHhcC-------CCCcCcHHHHHHHHcc-----------------------------------------
Confidence 3456667777666653 3568999999988420
Q ss_pred eecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--CCCCC---CCccccccccCCCCccchHhHHhhhh
Q 010548 308 VELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--ESPWD---EAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 308 ~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
++...+.++.+|+.||.|++|.|+.+|+..++.... +.+-. ...+...++.+.+|.|++++|+.++.
T Consensus 37 ---~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 108 (110)
T 1pva_A 37 ---KAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVH 108 (110)
T ss_dssp ---TTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred ---CcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 011256789999999999999999999999998762 22212 23344556789999999999998764
No 491
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=97.93 E-value=1.2e-05 Score=73.49 Aligned_cols=140 Identities=16% Similarity=0.151 Sum_probs=95.6
Q ss_pred cHHHHHHHHHHHhhccCC--CCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHH
Q 010548 191 KPRCVRALKRIFIICDHD--MDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI 268 (507)
Q Consensus 191 ~~~~~~~l~~~~~~~d~~--~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~ 268 (507)
.+...+.+.+.|..+|.+ .+|.++.+|+...... ........++.+.+.+. . ..++.|+++.|+.+...+.
T Consensus 32 s~~~~~~l~~~F~~~D~d~~~~G~i~~~e~~~~l~~--~~~~~~~~~~~~f~~~D---~--d~~g~i~~~Ef~~~~~~~~ 104 (207)
T 2ehb_A 32 TVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFR--NRNRRNLFADRIFDVFD---V--KRNGVIEFGEFVRSLGVFH 104 (207)
T ss_dssp CHHHHHHHHHHHHHHTTSSSCSSCEEHHHHHHHHHS--CTTCCCHHHHHHHHHHC---T--TCSSEECHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHhc--cccccHHHHHHHHHHhc---C--CCCCeEeHHHHHHHHHHHc
Confidence 345567789999999999 9999999999988765 22233333444444442 2 2356799999988754211
Q ss_pred HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC---
Q 010548 269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA--- 345 (507)
Q Consensus 269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~--- 345 (507)
. .....+-++.+|+.||.|++|.|+.+|+..++...
T Consensus 105 ~-----------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~ 143 (207)
T 2ehb_A 105 P-----------------------------------------SAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHE 143 (207)
T ss_dssp T-----------------------------------------TSCHHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHHHHH
T ss_pred c-----------------------------------------CCCHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 0 01134568899999999999999999999998521
Q ss_pred ---CCCCCCCCccc----cccccCCCCccchHhHHhhhhh
Q 010548 346 ---PESPWDEAPYK----DAAETTALGNLTLKGFVSKWAL 378 (507)
Q Consensus 346 ---p~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~w~~ 378 (507)
+..+.....+. ..++.|.+|.|++++|+.....
T Consensus 144 ~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~ 183 (207)
T 2ehb_A 144 SELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSL 183 (207)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence 11221111222 3578899999999999986543
No 492
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Probab=97.92 E-value=1.1e-05 Score=72.10 Aligned_cols=137 Identities=15% Similarity=0.150 Sum_probs=95.2
Q ss_pred ccHHHHHHHHHHHhhccC-----CC-C--CccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCC-cchhhH
Q 010548 190 LKPRCVRALKRIFIICDH-----DM-D--GALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLG-LTLSGF 260 (507)
Q Consensus 190 ~~~~~~~~l~~~~~~~d~-----~~-d--~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~f 260 (507)
..+...+.+.+.|..+|. +. + |.++.+|+.. . ..++...... .+.+.+ +...++. |+++.|
T Consensus 14 ls~~~~~~l~~~F~~~D~~~~~~~~~~~~G~i~~~el~~-l-~~~g~~~~~~---~l~~~~-----D~d~~G~~I~~~EF 83 (183)
T 1dgu_A 14 LTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS-L-PELKANPFKE---RICRVF-----STSPAKDSLSFEDF 83 (183)
T ss_dssp CCHHHHHHHHHHHHHHSCSTTCSSCCCTTTCSCHHHHHT-S-TTSSSCTTHH---HHHHHH-----SCSSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCccccccccccccCcCcHHHHHH-H-HhhhcCcHHH---HHHHHh-----CCCCCCCEecHHHH
Confidence 456667788999999998 56 7 9999999988 3 3444444443 333333 2223566 999999
Q ss_pred HHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHh
Q 010548 261 LFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELED 340 (507)
Q Consensus 261 ~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~ 340 (507)
+.+...+... ....+-++.+|+.||.|++|.|+.+|+..
T Consensus 84 ~~~~~~~~~~-----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~El~~ 122 (183)
T 1dgu_A 84 LDLLSVFSDT-----------------------------------------ATPDIKSHYAFRIFDFDDDGTLNREDLSR 122 (183)
T ss_dssp HHHHHHHSTT-----------------------------------------CCHHHHHHHHHHHHCTTCSSEEEHHHHHH
T ss_pred HHHHHHhcCC-----------------------------------------CCHHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence 9987643210 01235788999999999999999999999
Q ss_pred hhccCCC----CCCC---CC----ccccccccCCCCccchHhHHhhhh
Q 010548 341 LFLTAPE----SPWD---EA----PYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 341 ~f~~~p~----~p~~---~~----~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
++..... .+.. .. .+...++.|.+|.|++++|+....
T Consensus 123 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~ 170 (183)
T 1dgu_A 123 LVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVIS 170 (183)
T ss_dssp HHHHHHSSSCCCHHHHHHHHHHHHHHHHHHCTTSSSEEEHHHHHHHHC
T ss_pred HHHHHhcccccCCCCHHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 9886422 1111 11 144556789999999999988654
No 493
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=97.91 E-value=1.1e-05 Score=72.00 Aligned_cols=135 Identities=18% Similarity=0.243 Sum_probs=95.3
Q ss_pred HHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCc
Q 010548 194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL 273 (507)
Q Consensus 194 ~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~ 273 (507)
..+.+.+.|... +.+|.++.+|+......+.....+...++.+.+.+.. ..++.|+++.|+.+...+...
T Consensus 19 ~i~~l~~~fd~~--d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~-----d~~g~i~~~Ef~~~~~~~~~~--- 88 (183)
T 1s6c_A 19 ELQVLYRGFKNE--XPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDT-----TQTGSVKFEDFVTALSILLRG--- 88 (183)
T ss_dssp HHHHHHHHHHHH--CTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCT-----TCSSCEEHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHh--CCCCcCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCC-----CCCCcEeHHHHHHHHHHHcCC---
Confidence 333444444432 6789999999999999887666777777777666542 236689999999986643310
Q ss_pred cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC----CC--
Q 010548 274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA----PE-- 347 (507)
Q Consensus 274 ~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~----p~-- 347 (507)
...+-++.+|+.||.|++|.|+.+|+..++... ..
T Consensus 89 ---------------------------------------~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~ 129 (183)
T 1s6c_A 89 ---------------------------------------TVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYT 129 (183)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHTC---
T ss_pred ---------------------------------------CHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHHHHhcccc
Confidence 023567889999999999999999999998753 11
Q ss_pred CC-CC-------CCccccccccCCCCccchHhHHhhhh
Q 010548 348 SP-WD-------EAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 348 ~p-~~-------~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
.| .. ...+...++.|.+|.|++++|+..+.
T Consensus 130 ~~~~~~~~~~~~~~~~f~~~D~d~dG~i~~~Ef~~~~~ 167 (183)
T 1s6c_A 130 YPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQ 167 (183)
T ss_dssp --------CHHHHHHHHHHHCTTCSSEECHHHHHHHTT
T ss_pred CcCccHHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 11 11 12234456789999999999998764
No 494
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=97.88 E-value=5.6e-06 Score=67.43 Aligned_cols=101 Identities=13% Similarity=0.238 Sum_probs=74.4
Q ss_pred cCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCC
Q 010548 226 FNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPD 305 (507)
Q Consensus 226 ~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~ 305 (507)
++..++..+++.+...+. .++.|+++.|+.+...
T Consensus 3 lg~~~~~~e~~~~~~~~d-------~~g~i~~~eF~~~~~~--------------------------------------- 36 (109)
T 1bu3_A 3 FSGILADADVAAALKACE-------AADSFNYKAFFAKVGL--------------------------------------- 36 (109)
T ss_dssp CSCSSCHHHHHHHHHHTC-------STTCCCHHHHHHHHTG---------------------------------------
T ss_pred ccccCCHHHHHHHHHHhC-------CCCcCcHHHHHHHHHc---------------------------------------
Confidence 455677777777777654 3568999999987431
Q ss_pred CceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--CCCCC---CCccccccccCCCCccchHhHHhhhh
Q 010548 306 QSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--ESPWD---EAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 306 ~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
.....+.++.+|+.||.|++|.|+.+|+..++.... +.+.. ...+...++.+.+|.|++++|+.++.
T Consensus 37 -----~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 108 (109)
T 1bu3_A 37 -----TAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAALVK 108 (109)
T ss_dssp -----GGSCHHHHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHT
T ss_pred -----ChhhHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 011246789999999999999999999999998752 22222 23345556789999999999998764
No 495
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Probab=97.86 E-value=4.1e-05 Score=86.13 Aligned_cols=172 Identities=15% Similarity=0.144 Sum_probs=106.6
Q ss_pred HHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCcc
Q 010548 195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLE 274 (507)
Q Consensus 195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 274 (507)
...++.+|..+|.+.+|.++.+|+....+.. +..++..+++.+...+. ..++.|+++.|+.+.... +
T Consensus 606 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~-g~~l~~~~~~~l~~~~d------d~dg~I~~~eF~~~~~~~------~ 672 (900)
T 1qxp_A 606 IRNYLTIFRKFDLDKSGSMSAYEMRMAIEAA-GFKLPCQLHQVIVARFA------DDELIIDFDNFVRCLVRL------E 672 (900)
T ss_dssp HHHHHHHHGGGCTTCCSCCBHHHHHHHHHHT-TEECCHHHHHHHHHHTS------CSSSBCCHHHHHHHHHHH------H
T ss_pred HHHHHHHHHhhCCCCCCeECHHHHHHHHHHh-CCCCCHHHHHHHHHHhC------CCCCeEcHHHHHHHHHHH------H
Confidence 3678899999999999999999999988764 56678877776666542 236789999999887643 4
Q ss_pred chhHHHhhccCCCCcccc---CCCC----C-------C---CCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHH
Q 010548 275 TTWAVLRKFGYGDDLELR---DDFL----P-------V---PTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAE 337 (507)
Q Consensus 275 ~~w~~l~~~~y~~~l~~~---~~~~----p-------~---~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~e 337 (507)
..+..++.+.-+.+=.+. .+++ . . .................+-++++|+++|.+ +|.++.+|
T Consensus 673 ~l~~~F~~~D~d~~G~It~~~~efl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~-~G~Is~~E 751 (900)
T 1qxp_A 673 ILFKIFKQLDPENTGTIQLDLISWLSFSVLGKLAAAIEHHHHHHMHYSNIEANESEEERQFRKLFVQLAGD-DMEVSATE 751 (900)
T ss_dssp HHHHHHHHSCSSCCSCEEEEHHHHHHHTCC--------------CCCCCC--------------CCCCTTC-SSCBCHHH
T ss_pred HHHHHHHhhCCCCCceEEecHHHHHHHhhhccccccccccccccccccCCCCCChHHHHHHHHHHHHhcCC-CCccCHHH
Confidence 455555555443322110 0000 0 0 000001111233344567789999999998 99999999
Q ss_pred HHhhhccCCC-------CC---CCCCccccccccCCCCccchHhHHhhhhhhh
Q 010548 338 LEDLFLTAPE-------SP---WDEAPYKDAAETTALGNLTLKGFVSKWALMT 380 (507)
Q Consensus 338 l~~~f~~~p~-------~p---~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 380 (507)
+.+++..... .+ ..++.+...+++|.+|.|++++|.++|..+.
T Consensus 752 l~~~L~~~~~~~~~~~~~~~s~~~~~~l~~~~D~d~dG~Is~~EF~~l~~~~~ 804 (900)
T 1qxp_A 752 LMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIK 804 (900)
T ss_dssp HTTTSCC----CCSCC--CCCHHHHHHHHHHHCCSSSSSBCSHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccCCCCHHHHHHHHHHHCCCCCCeECHHHHHHHHHHHH
Confidence 9999886421 11 1233455667899999999999999997654
No 496
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=97.85 E-value=5.8e-06 Score=67.33 Aligned_cols=98 Identities=15% Similarity=0.232 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCce
Q 010548 229 PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSV 308 (507)
Q Consensus 229 ~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~ 308 (507)
.++..+++.+.+.+.. ++.|+++.|+.++..
T Consensus 5 ~~s~~ei~~~~~~~d~-------~g~i~~~eF~~~~~~------------------------------------------ 35 (109)
T 5pal_A 5 VLKADDINKAISAFKD-------PGTFDYKRFFHLVGL------------------------------------------ 35 (109)
T ss_dssp TSCHHHHHHHHHHTCS-------TTCCCHHHHHHHHTC------------------------------------------
T ss_pred cCCHHHHHHHHHHhCC-------CCcCcHHHHHHHHhh------------------------------------------
Confidence 4566666666666532 678999999997431
Q ss_pred ecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--CCCCC---CCccccccccCCCCccchHhHHhhhh
Q 010548 309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--ESPWD---EAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 309 ~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
.....+.++.+|+.||+|++|.|+.+|+..++.... +.+.. ...+...++.|.+|.|++++|+.++.
T Consensus 36 --~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 107 (109)
T 5pal_A 36 --KGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKMVA 107 (109)
T ss_dssp --TTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred --ccCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 011246789999999999999999999999998641 22222 23344556789999999999998764
No 497
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A
Probab=97.84 E-value=1e-05 Score=77.03 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=100.5
Q ss_pred HHHHHHHhhccCCCCCccChhhhHHHHhHhc---CCCCCHHHHHHHHH-HHHhhccCCccCCCcchhhHHHHHHHHHHcC
Q 010548 196 RALKRIFIICDHDMDGALNDAELNEFQVKCF---NAPLQPAEIVGVKR-VVQEKQHDGVNDLGLTLSGFLFLHALFIEKG 271 (507)
Q Consensus 196 ~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~---~~~l~~~~~~~l~~-~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~ 271 (507)
..+.++|..+|.+.+|.++.+|+........ +..++..+++.+.+ .+.....+ .++.|+++.|+.+...
T Consensus 104 ~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~D~~--~dg~i~~~ef~~~~~~----- 176 (272)
T 2be4_A 104 VEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKN--KDGRLDLNDLARILAL----- 176 (272)
T ss_dssp HHHHHHHHHHCTTCCSEEEGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSS--CSSEEEHHHHGGGSCC-----
T ss_pred HHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccC--CCCcCcHHHHHHHHhh-----
Confidence 4578889999999999999999999988875 77888888876444 33333222 3667999999876321
Q ss_pred CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecC-HhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC---
Q 010548 272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELA-SEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--- 347 (507)
Q Consensus 272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s-~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--- 347 (507)
.....|. . ....+. ....+-++.+|+.||.|++|.|+.+|+..++.....
T Consensus 177 ~~~~~~~-------------------------~-~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~~l~~~~~~~~ 230 (272)
T 2be4_A 177 QENFLLQ-------------------------F-KMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVR 230 (272)
T ss_dssp SSCSSTT-------------------------S-CCCHHHHHHHHHHHHHHHHHHCTTCCSEEETHHHHHHHHHHHHHHS
T ss_pred hHHHHhh-------------------------h-hhhhccccccHHHHHHHHHHhCCCCCCeecHHHHHHHHHHHHHHcC
Confidence 0000000 0 000001 123467899999999999999999999998875311
Q ss_pred CCCC---CCc----cccccccCCCCccchHhHHhhhh
Q 010548 348 SPWD---EAP----YKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 348 ~p~~---~~~----~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
.+.. ... +...++.|.+|.|++++|+..-.
T Consensus 231 ~~~~~~~~~~~~~~l~~~~D~d~dG~is~~EF~~~~~ 267 (272)
T 2be4_A 231 PSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCLG 267 (272)
T ss_dssp SSCCHHHHHHHHHHHHHHHCCSTTCEEEHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHc
Confidence 1122 111 44567889999999999987543
No 498
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=97.82 E-value=5.1e-06 Score=68.34 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=59.5
Q ss_pred CCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCccccccccCCCCccchHhHHhhhhhhh
Q 010548 304 PDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMT 380 (507)
Q Consensus 304 ~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 380 (507)
|.....+|+.-.+-++.+|+.||+|+||.|+.+|+..++............+...++.|.+|.|++++|+..+..+.
T Consensus 2 ~~~~w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~~~D~d~dG~I~~~EF~~~~~~~~ 78 (111)
T 2kgr_A 2 PVAEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFILAMHLID 78 (111)
T ss_dssp CSCCSSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHH
Confidence 44556688888999999999999999999999999999983222111123344556889999999999999876543
No 499
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=97.82 E-value=2.3e-06 Score=67.63 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=59.3
Q ss_pred CCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548 302 LSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWAL 378 (507)
Q Consensus 302 ~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 378 (507)
-++.+..+|++.-.+.++.+|+.||.|+||.|+.+|+..++......+.....+...++.+.+|.|++++|+..|..
T Consensus 13 ~~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~D~d~dg~I~~~EF~~~~~~ 89 (91)
T 2pmy_A 13 NLYFQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGFLG 89 (91)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSEECHHHHTHHHHH
T ss_pred cHHHHhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHH
Confidence 34455678999999999999999999999999999999999876533333334455568899999999999998763
No 500
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=97.81 E-value=7.3e-06 Score=66.60 Aligned_cols=98 Identities=17% Similarity=0.208 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCce
Q 010548 229 PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSV 308 (507)
Q Consensus 229 ~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~ 308 (507)
.++..+++.+.+.+. .++.|+++.|+.+..+
T Consensus 5 ~~t~~e~~~~~~~~d-------~~g~i~~~eF~~~~~~------------------------------------------ 35 (108)
T 1rro_A 5 ILSAEDIAAALQECQ-------DPDTFEPQKFFQTSGL------------------------------------------ 35 (108)
T ss_dssp TSCHHHHHHHHHHTC-------STTCCCHHHHHHHHSG------------------------------------------
T ss_pred cCCHHHHHHHHHHcc-------CCCCcCHHHHHHHHhc------------------------------------------
Confidence 456666666666653 3568999999987420
Q ss_pred ecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--CCCCC---CCccccccccCCCCccchHhHHhhhh
Q 010548 309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--ESPWD---EAPYKDAAETTALGNLTLKGFVSKWA 377 (507)
Q Consensus 309 ~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (507)
+..-.+-++.+|+.||.|++|.|+.+|+..++.... +.+.. ...+...++.+.+|.|++++|+.++.
T Consensus 36 --~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 107 (108)
T 1rro_A 36 --SKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEMVH 107 (108)
T ss_dssp --GGSCHHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCCSSSSSEEHHHHHHHHT
T ss_pred --CcccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHc
Confidence 011245688999999999999999999999998763 33322 22344556789999999999998763
Done!