Query 010549
Match_columns 507
No_of_seqs 322 out of 1437
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 01:50:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1379 Serine/threonine prote 100.0 7.2E-46 1.6E-50 371.0 25.0 244 253-496 70-330 (330)
2 PLN03145 Protein phosphatase 2 100.0 1.4E-34 3E-39 302.2 27.7 213 257-503 65-336 (365)
3 COG0631 PTC1 Serine/threonine 100.0 9.3E-33 2E-37 276.8 24.4 207 261-500 10-255 (262)
4 PTZ00224 protein phosphatase 2 100.0 3E-31 6.5E-36 278.3 25.9 210 257-503 22-277 (381)
5 PRK14559 putative protein seri 100.0 1.5E-29 3.3E-34 279.4 27.9 217 259-503 375-641 (645)
6 cd00143 PP2Cc Serine/threonine 100.0 7.6E-29 1.7E-33 240.9 23.3 205 263-496 4-254 (254)
7 KOG0697 Protein phosphatase 1B 100.0 2.1E-29 4.6E-34 248.0 16.8 217 256-503 21-297 (379)
8 KOG0698 Serine/threonine prote 100.0 3.8E-28 8.2E-33 250.9 23.3 208 266-501 46-308 (330)
9 smart00332 PP2Cc Serine/threon 100.0 9.6E-28 2.1E-32 234.4 23.5 201 265-494 11-255 (255)
10 PF00481 PP2C: Protein phospha 100.0 6.2E-29 1.4E-33 246.4 10.2 189 265-459 5-247 (254)
11 KOG0699 Serine/threonine prote 99.9 5.1E-23 1.1E-27 208.9 19.2 144 342-502 330-508 (542)
12 KOG0700 Protein phosphatase 2C 99.9 1.1E-20 2.3E-25 195.6 16.4 183 274-461 85-378 (390)
13 KOG1323 Serine/threonine phosp 99.8 1.7E-19 3.7E-24 181.8 16.6 203 282-499 143-489 (493)
14 PF13672 PP2C_2: Protein phosp 99.7 1.1E-17 2.3E-22 160.5 13.0 168 264-440 3-195 (212)
15 smart00331 PP2C_SIG Sigma fact 99.7 1.6E-16 3.4E-21 150.3 20.3 168 271-458 14-192 (193)
16 TIGR02865 spore_II_E stage II 99.7 6.1E-15 1.3E-19 167.7 21.5 204 250-496 545-763 (764)
17 PF07228 SpoIIE: Stage II spor 99.5 1.6E-12 3.5E-17 122.4 20.7 174 283-497 4-193 (193)
18 COG2208 RsbU Serine phosphatas 98.8 3.5E-07 7.7E-12 96.0 19.8 186 273-497 161-366 (367)
19 KOG0618 Serine/threonine phosp 98.8 2E-08 4.2E-13 113.7 10.8 185 282-501 550-776 (1081)
20 PRK10693 response regulator of 74.1 38 0.00082 34.7 11.5 99 273-374 149-259 (303)
21 PF09436 DUF2016: Domain of un 32.0 24 0.00053 29.2 1.2 14 412-425 26-39 (72)
22 COG3700 AphA Acid phosphatase 27.9 92 0.002 30.5 4.4 49 411-459 69-128 (237)
23 PF06972 DUF1296: Protein of u 27.2 97 0.0021 24.8 3.7 26 427-455 19-44 (60)
No 1
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-46 Score=371.00 Aligned_cols=244 Identities=50% Similarity=0.749 Sum_probs=224.2
Q ss_pred cceEEEEEEEecCCCCCCCCCCCceEEe---cCCcEEEEEeCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCHHH
Q 010549 253 KTLKLLSGACCLPHPDKEETGGEDAHFI---SDKQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDGSIDPAR 329 (507)
Q Consensus 253 ~~l~l~~gs~~~s~~G~~R~~NEDa~~V---~d~~lfaVaDGhGG~~~sg~~Ag~~As~ll~~~i~~l~~~~~~~~~~~e 329 (507)
+.+....+.+..+++.++.+.+||+||+ ....++|||||+|||+..|++++.|+++||.++.+.+.+......+|..
T Consensus 70 t~~~~~~~~~~~~~~~~~~~~GEDa~Fvss~~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~ 149 (330)
T KOG1379|consen 70 TSLCGFSKDFIRPHPSKVGKGGEDAWFVSSNPHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVN 149 (330)
T ss_pred hhhccccccccCCccccCCCCCCcceeeccCcccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHH
Confidence 4455666777788888999999999999 3788999999999999999999999999999988888877766778999
Q ss_pred HHHHHHHccCcC-----CCceEEEEEEe--CCeEEEEEecCCcEEEEECCeEEEcCcccccccCCccceecCC------C
Q 010549 330 VLEKAHSSTRAK-----GSSTACIIALT--DQGLRAINLGDSGFVVVRDGCTVFRSPVQQHDFNFTYQLEYGS------N 396 (507)
Q Consensus 330 ~L~~A~~~~~~~-----GGSTavvalI~--~~~L~VANVGDSRayLiRdG~li~lT~~q~~~~n~p~qL~~g~------~ 396 (507)
+|.++|.++... |+||||++++. +++||+||+|||.+.++|+|++++.|.+|+|.||.||||+.+. .
T Consensus 150 lL~~ay~~l~~~~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~ 229 (330)
T KOG1379|consen 150 LLEKAYAELKSQKVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYI 229 (330)
T ss_pred HHHHHHHHHhhcCCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheeccCCceeeccCCccccccc
Confidence 999999988655 99999999999 6799999999999999999999999999999999999998754 4
Q ss_pred CCCCCCceEEEEecCCCCEEEEEccCCCCCCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhhhcccCCCCcchhhhh
Q 010549 397 SDLPSSGQVFTIPVAPGDVIIAGTDGLFDNLYNNEITAVVVHAMR-AGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQ 475 (507)
Q Consensus 397 ~d~p~~pdV~~i~L~~gD~LVLaSDGLwD~Ls~eEI~~iV~~~~~-~~~~~~~aA~~Lv~~A~~~a~d~~~~spf~~~a~ 475 (507)
.+.|...++.++++++||+|||+||||||+|.+++|.+++..... ...+++.+|++|++.|+++++|+++++||+.+|+
T Consensus 230 ~d~p~~ad~~~~~v~~GDvIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar 309 (330)
T KOG1379|consen 230 SDVPDSADVTSFDVQKGDVIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAR 309 (330)
T ss_pred cCCccccceEEEeccCCCEEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCcCChHHHHHH
Confidence 778888999999999999999999999999999999999998766 5678999999999999999999999999999999
Q ss_pred hccccCCCCCCCceEEEEEEe
Q 010549 476 DAGFRYYGGKLDDITVVVSYI 496 (507)
Q Consensus 476 ~~g~~~~gGs~DNITVIVV~~ 496 (507)
+.|+++++|+.||||||+..+
T Consensus 310 ~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 310 EHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred HhCcccCCCCcccEEEEEecC
Confidence 999999999999999999864
No 2
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=1.4e-34 Score=302.19 Aligned_cols=213 Identities=20% Similarity=0.229 Sum_probs=162.9
Q ss_pred EEEEEEecCCCCCCCCCCCceEEe-cC--------------CcEEEEEeCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC
Q 010549 257 LLSGACCLPHPDKEETGGEDAHFI-SD--------------KQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEP 321 (507)
Q Consensus 257 l~~gs~~~s~~G~~R~~NEDa~~V-~d--------------~~lfaVaDGhGG~~~sg~~Ag~~As~ll~~~i~~l~~~~ 321 (507)
+.+++ .+++|. |+.|||++++ ++ ..||||||||||+. ++++|++.+...+..- .
T Consensus 65 ~~~~~--~s~~G~-R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~-----age~as~~l~~~i~~~---~ 133 (365)
T PLN03145 65 VRSGA--WADIGS-RSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKH-----AADFACYHLPRFIVED---E 133 (365)
T ss_pred eEEEE--EccccC-CCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHH-----HHHHHHHHHHHHHHhh---h
Confidence 34444 889995 9999999986 31 36899999999999 9999998877665431 1
Q ss_pred CCCCCHHHHHHHHHHcc------------CcCCCceEEEEEEeCCeEEEEEecCCcEEEEECCeEEEcCcccccccC---
Q 010549 322 DGSIDPARVLEKAHSST------------RAKGSSTACIIALTDQGLRAINLGDSGFVVVRDGCTVFRSPVQQHDFN--- 386 (507)
Q Consensus 322 ~~~~~~~e~L~~A~~~~------------~~~GGSTavvalI~~~~L~VANVGDSRayLiRdG~li~lT~~q~~~~n--- 386 (507)
....+..++|.+++.++ ....|||+++++|.++.+|++|+||||+|++|+|+++++|.+|.....
T Consensus 134 ~~~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~ 213 (365)
T PLN03145 134 DFPREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKER 213 (365)
T ss_pred ccchhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHH
Confidence 11223455566555432 123579999999999999999999999999999999999998853110
Q ss_pred ----------------Cccceec--CCC----------CCCCCCceEEEEecCCCC-EEEEEccCCCCCCCHHHHHHHHH
Q 010549 387 ----------------FTYQLEY--GSN----------SDLPSSGQVFTIPVAPGD-VIIAGTDGLFDNLYNNEITAVVV 437 (507)
Q Consensus 387 ----------------~p~qL~~--g~~----------~d~p~~pdV~~i~L~~gD-~LVLaSDGLwD~Ls~eEI~~iV~ 437 (507)
....++. |.. .....+|++..++++++| |||||||||||+|+++|+++++.
T Consensus 214 ~RI~~~Gg~v~~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~ 293 (365)
T PLN03145 214 KRIEASGGYVYDGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFAR 293 (365)
T ss_pred HHHHHcCCceecceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHH
Confidence 0011221 110 013357899999999876 66799999999999999999998
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhhcccCCCCcchhhhhhccccCCCCCCCceEEEEEEecCCCCCC
Q 010549 438 HAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYITNCEDEN 503 (507)
Q Consensus 438 ~~~~~~~~~~~aA~~Lv~~A~~~a~d~~~~spf~~~a~~~g~~~~gGs~DNITVIVV~~~~~~~~~ 503 (507)
+.+....+|+++|+.|+++|+. +|+.||||||||+|....+.+
T Consensus 294 ~~l~~~~~p~~aa~~Lv~~Al~-----------------------rgs~DNITvIVV~l~~~~~~~ 336 (365)
T PLN03145 294 RRLQEHNDPVMCSKELVDEALK-----------------------RKSGDNLAVVVVCFQSQPPPN 336 (365)
T ss_pred HHHhcCCCHHHHHHHHHHHHHh-----------------------CCCCCCEEEEEEEeecCCCcc
Confidence 8777667899999999999998 688999999999999865544
No 3
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=9.3e-33 Score=276.75 Aligned_cols=207 Identities=26% Similarity=0.350 Sum_probs=161.0
Q ss_pred EEecCCCCCCCCCCCceEEe-cC-----CcEEEEEeCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC-CCCCC--HHHHH
Q 010549 261 ACCLPHPDKEETGGEDAHFI-SD-----KQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEP-DGSID--PARVL 331 (507)
Q Consensus 261 s~~~s~~G~~R~~NEDa~~V-~d-----~~lfaVaDGhGG~~~sg~~Ag~~As~ll~~~i~~l~~~~-~~~~~--~~e~L 331 (507)
.++++++|..|..|||++++ .+ ..||+||||||||. +|++|++++...+.....+. ..... ..+.|
T Consensus 10 ~~~~s~~g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~GGh~-----~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l 84 (262)
T COG0631 10 VAGLSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMGGHA-----AGEVASKLAVEALARLFDETNFNSLNESLEELL 84 (262)
T ss_pred eeeeccCCCccCCCCcceeeccccCCcceeEEEEEeCccchh-----HHHHHHHHHHHHHHHHHHhccccccchhHHHHH
Confidence 34489999999999999998 32 24999999999999 99999998888776554332 21212 34444
Q ss_pred HHHHHcc------------C-cCCCceEEEEEEeCCeEEEEEecCCcEEEEECCeEEEcCcccccc--------------
Q 010549 332 EKAHSST------------R-AKGSSTACIIALTDQGLRAINLGDSGFVVVRDGCTVFRSPVQQHD-------------- 384 (507)
Q Consensus 332 ~~A~~~~------------~-~~GGSTavvalI~~~~L~VANVGDSRayLiRdG~li~lT~~q~~~-------------- 384 (507)
.+++... . ...|||++++++.++++++|||||||+||+|+|++.++|++|...
T Consensus 85 ~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~~ 164 (262)
T COG0631 85 KEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEEA 164 (262)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHHH
Confidence 4432211 1 224588898999999999999999999999999999999988421
Q ss_pred cCCcc--ceecCCCCCCC-CCceEEEEecCCCCEEEEEccCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhh
Q 010549 385 FNFTY--QLEYGSNSDLP-SSGQVFTIPVAPGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRA 461 (507)
Q Consensus 385 ~n~p~--qL~~g~~~d~p-~~pdV~~i~L~~gD~LVLaSDGLwD~Ls~eEI~~iV~~~~~~~~~~~~aA~~Lv~~A~~~a 461 (507)
...|. .++. ..++.+ ..|++...+++++|++|||||||||.++++++.+++.. ..++++++++|++.|++
T Consensus 165 ~~~~~~~~ltr-alG~~~~~~p~~~~~~~~~~d~llL~SDGl~d~v~~~~i~~il~~----~~~~~~~~~~li~~a~~-- 237 (262)
T COG0631 165 RSHPRRNALTR-ALGDFDLLEPDITELELEPGDFLLLCSDGLWDVVSDDEIVDILKN----SETPQEAADKLIELALE-- 237 (262)
T ss_pred HhCccchhhhh-hcCCCcccceeEEEEEcCCCCEEEEECCCCccCcCHHHHHHHHhc----CCCHHHHHHHHHHHHHh--
Confidence 11122 1222 223333 67899999999999999999999999999999999986 36899999999999998
Q ss_pred cccCCCCcchhhhhhccccCCCCCCCceEEEEEEecCCC
Q 010549 462 QDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYITNCE 500 (507)
Q Consensus 462 ~d~~~~spf~~~a~~~g~~~~gGs~DNITVIVV~~~~~~ 500 (507)
+|+.||||+++|.+....
T Consensus 238 ---------------------~g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 238 ---------------------GGGPDNITVVLVRLNGEG 255 (262)
T ss_pred ---------------------cCCCCceEEEEEEeeccc
Confidence 799999999999998765
No 4
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=3e-31 Score=278.32 Aligned_cols=210 Identities=22% Similarity=0.303 Sum_probs=155.4
Q ss_pred EEEEEEecCCCCCCCCCCCceEEe---cCCcEEEEEeCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Q 010549 257 LLSGACCLPHPDKEETGGEDAHFI---SDKQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDGSIDPARVLEK 333 (507)
Q Consensus 257 l~~gs~~~s~~G~~R~~NEDa~~V---~d~~lfaVaDGhGG~~~sg~~Ag~~As~ll~~~i~~l~~~~~~~~~~~e~L~~ 333 (507)
+.+|+ .+++|. |+.|||++++ ++..+|+|||||||.. +++++.+.+...+. +... ... .+.|++
T Consensus 22 ~~~g~--~s~~G~-R~~nED~~~v~~~~~~~lfgVfDGHgG~~-----~S~~~~~~l~~~l~---~~~~-~~~-~~~l~~ 88 (381)
T PTZ00224 22 FRCAS--ACVNGY-RESMEDAHLLYLTDDWGFFGVFDGHVNDE-----CSQYLARAWPQALE---KEPE-PMT-DERMEE 88 (381)
T ss_pred EEEEE--EeCCCC-CCCCCCeeEeccCCCceEEEEEeCCCcHH-----HHHHHHHHHHHHHH---hccc-ccc-HHHHHH
Confidence 44555 678886 8999999886 4457999999999987 77777766654432 2111 111 122333
Q ss_pred HHH-------ccCcCCCceEEEEEEe-CCeEEEEEecCCcEEEEECCeEEEcCccccccc-------------CCc----
Q 010549 334 AHS-------STRAKGSSTACIIALT-DQGLRAINLGDSGFVVVRDGCTVFRSPVQQHDF-------------NFT---- 388 (507)
Q Consensus 334 A~~-------~~~~~GGSTavvalI~-~~~L~VANVGDSRayLiRdG~li~lT~~q~~~~-------------n~p---- 388 (507)
++. +....+|||+++++|. ++.++|+||||||+|++|+|+++++|.+|...- ..+
T Consensus 89 a~~~~d~~i~~~~~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~Rv~ 168 (381)
T PTZ00224 89 LCLEIDEEWMDSGREGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVSNRVD 168 (381)
T ss_pred HHHHHHHHHHhcccCCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEecccccc
Confidence 332 2233567999988776 568999999999999999999999999885311 001
Q ss_pred --cceecCCCCC---------------CCCCceEEEEecCCCCEEEEEccCCCC-CCCHHHHHHHHHHHHHcCCCHHHHH
Q 010549 389 --YQLEYGSNSD---------------LPSSGQVFTIPVAPGDVIIAGTDGLFD-NLYNNEITAVVVHAMRAGLGPQVTA 450 (507)
Q Consensus 389 --~qL~~g~~~d---------------~p~~pdV~~i~L~~gD~LVLaSDGLwD-~Ls~eEI~~iV~~~~~~~~~~~~aA 450 (507)
..++.. .++ ...+|++..++++++|+|||||||||| +++++|+.+++.+.+....+++++|
T Consensus 169 G~l~vTRa-lGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~D~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA 247 (381)
T PTZ00224 169 GDLAVSRA-FGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSNDFIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVA 247 (381)
T ss_pred Cceeeecc-cCCcccccccccccccCcceeeeEEEEEECCCCCEEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHH
Confidence 112211 111 114689999999999999999999999 8999999999987766667899999
Q ss_pred HHHHHHHHhhhcccCCCCcchhhhhhccccCCCCCCCceEEEEEEecCCCCCC
Q 010549 451 QKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYITNCEDEN 503 (507)
Q Consensus 451 ~~Lv~~A~~~a~d~~~~spf~~~a~~~g~~~~gGs~DNITVIVV~~~~~~~~~ 503 (507)
+.|+++|+. +|+.||||||||++...++..
T Consensus 248 ~~Lv~~A~~-----------------------rGs~DNITvIvV~~~~~~~~~ 277 (381)
T PTZ00224 248 GRVCDEAIR-----------------------RGSKDNISCLIVQLKDGASYA 277 (381)
T ss_pred HHHHHHHHh-----------------------cCCCCCEEEEEEEeeCCCChh
Confidence 999999998 789999999999999876544
No 5
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.97 E-value=1.5e-29 Score=279.45 Aligned_cols=217 Identities=17% Similarity=0.190 Sum_probs=155.2
Q ss_pred EEEEecCCCCCCCCCCCceEEe-c--------------CCcEEEEEeCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC-C
Q 010549 259 SGACCLPHPDKEETGGEDAHFI-S--------------DKQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEP-D 322 (507)
Q Consensus 259 ~gs~~~s~~G~~R~~NEDa~~V-~--------------d~~lfaVaDGhGG~~~sg~~Ag~~As~ll~~~i~~l~~~~-~ 322 (507)
+..++.+|+|++|+.|||++.+ . +..+|+|||||||+. +|++|++++...+..+.... .
T Consensus 375 l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~-----~GevAS~lAv~~L~~~~~~~~~ 449 (645)
T PRK14559 375 LEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHA-----AGEVASALAVETLQQYFQQHWQ 449 (645)
T ss_pred EEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCch-----hHHHHHHHHHHHHHHHHHhhhc
Confidence 3345599999999999999876 2 246899999999999 89999988777765443221 1
Q ss_pred CCCCHHHHHHHHHHc----c-----------CcCCCceEEEEEEeCCeEEEEEecCCcEEEE-ECCeEEEcCcccccc--
Q 010549 323 GSIDPARVLEKAHSS----T-----------RAKGSSTACIIALTDQGLRAINLGDSGFVVV-RDGCTVFRSPVQQHD-- 384 (507)
Q Consensus 323 ~~~~~~e~L~~A~~~----~-----------~~~GGSTavvalI~~~~L~VANVGDSRayLi-RdG~li~lT~~q~~~-- 384 (507)
......+.|++++.. . ....|||++++++.++.+|++||||||+|++ |+|++.++|.+|...
T Consensus 450 ~~~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~ 529 (645)
T PRK14559 450 DELPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQR 529 (645)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHH
Confidence 112223334333221 1 1124699999999999999999999999998 578999999998531
Q ss_pred -------------cCCccceecCCCC--CCCCCceEEEEecCCCCEEEEEccCCCCC-CCHHHHHHHHHHHHHcCCCHHH
Q 010549 385 -------------FNFTYQLEYGSNS--DLPSSGQVFTIPVAPGDVIIAGTDGLFDN-LYNNEITAVVVHAMRAGLGPQV 448 (507)
Q Consensus 385 -------------~n~p~qL~~g~~~--d~p~~pdV~~i~L~~gD~LVLaSDGLwD~-Ls~eEI~~iV~~~~~~~~~~~~ 448 (507)
....+.|+...+. ....+|++..+++++||+||||||||||. +.++++.+.+...+....++++
T Consensus 530 lv~~Gi~~~~a~~~p~~~~LTrALG~~~~~~l~Pdi~~~~L~~gD~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~ 609 (645)
T PRK14559 530 EIQRGVEPQIAYARPDAYQLTQALGPRDNSAIQPDIQFLEIEEDTLLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQ 609 (645)
T ss_pred HHHhCCCHHHHhcCcccceeeeccCCCCCCcccceEEEEEcCCCCEEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHH
Confidence 0111223322211 12246899999999999999999999995 3333344444444445578999
Q ss_pred HHHHHHHHHHhhhcccCCCCcchhhhhhccccCCCCCCCceEEEEEEecCCCCCC
Q 010549 449 TAQKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYITNCEDEN 503 (507)
Q Consensus 449 aA~~Lv~~A~~~a~d~~~~spf~~~a~~~g~~~~gGs~DNITVIVV~~~~~~~~~ 503 (507)
++++|++.|+. +|+.||||+|||++....+..
T Consensus 610 aa~~Li~~Al~-----------------------~gg~DNITvIvV~l~~~p~~~ 641 (645)
T PRK14559 610 GLNKLIDLANQ-----------------------YNGHDNITAILVRLKVRPQLS 641 (645)
T ss_pred HHHHHHHHHHH-----------------------cCCCCcEEEEEEEeccCCCCC
Confidence 99999999988 688999999999998776544
No 6
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.97 E-value=7.6e-29 Score=240.85 Aligned_cols=205 Identities=27% Similarity=0.330 Sum_probs=153.9
Q ss_pred ecCCCCCCCCCCCceEEe-c-----CCcEEEEEeCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCC--CCCHHHHHHHH
Q 010549 263 CLPHPDKEETGGEDAHFI-S-----DKQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDG--SIDPARVLEKA 334 (507)
Q Consensus 263 ~~s~~G~~R~~NEDa~~V-~-----d~~lfaVaDGhGG~~~sg~~Ag~~As~ll~~~i~~l~~~~~~--~~~~~e~L~~A 334 (507)
+.+..++.|+.|||++++ . +..+|+|||||||+. .++++++++...+......... ..++.+.|+++
T Consensus 4 ~~~~~~g~r~~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~-----~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 78 (254)
T cd00143 4 GVSDKGGDRKTNEDAVVIKPNLNNEDGGLFGVFDGHGGHA-----AGEFASKLLVEELLEELEETLTLSEEDIEEALRKA 78 (254)
T ss_pred eeecCCCCCCCCcceEEEeccCCCCCcEEEEEEcCCChHH-----HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 456777789999999998 3 568999999999998 8888888877766544432210 12233444444
Q ss_pred HHcc-------------CcCCCceEEEEEEeCCeEEEEEecCCcEEEEECCeEEEcCccccccc----------------
Q 010549 335 HSST-------------RAKGSSTACIIALTDQGLRAINLGDSGFVVVRDGCTVFRSPVQQHDF---------------- 385 (507)
Q Consensus 335 ~~~~-------------~~~GGSTavvalI~~~~L~VANVGDSRayLiRdG~li~lT~~q~~~~---------------- 385 (507)
+... ...+|||++++++.++.++++|+||||+|++|++++.++|.+|....
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~ 158 (254)
T cd00143 79 FLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSN 158 (254)
T ss_pred HHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEe
Confidence 3321 13467999999999999999999999999999999999998875431
Q ss_pred -CCccc--eecCCCCC-----CCCCceEEEEec-CCCCEEEEEccCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 010549 386 -NFTYQ--LEYGSNSD-----LPSSGQVFTIPV-APGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAAL 456 (507)
Q Consensus 386 -n~p~q--L~~g~~~d-----~p~~pdV~~i~L-~~gD~LVLaSDGLwD~Ls~eEI~~iV~~~~~~~~~~~~aA~~Lv~~ 456 (507)
..+.+ ++...+.. ...+|++..+++ +++|+||||||||||.+++++|.+++.....+ .+++++|+.|++.
T Consensus 159 ~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~~-~~~~~~a~~l~~~ 237 (254)
T cd00143 159 GRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAK-EDLQEAAQELVDL 237 (254)
T ss_pred CEEcCceeeccccCCccccCCEEcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHhcc-cCHHHHHHHHHHH
Confidence 11111 11111111 234678999999 89999999999999999999999999876211 2799999999999
Q ss_pred HHhhhcccCCCCcchhhhhhccccCCCCCCCceEEEEEEe
Q 010549 457 ARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYI 496 (507)
Q Consensus 457 A~~~a~d~~~~spf~~~a~~~g~~~~gGs~DNITVIVV~~ 496 (507)
|.. .++.||+|+|++++
T Consensus 238 a~~-----------------------~~~~Dn~t~i~~~~ 254 (254)
T cd00143 238 ALR-----------------------RGSHDNITVVVVRL 254 (254)
T ss_pred HHh-----------------------CCCCCCEEEEEEeC
Confidence 988 57889999999975
No 7
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=99.96 E-value=2.1e-29 Score=248.00 Aligned_cols=217 Identities=18% Similarity=0.265 Sum_probs=156.5
Q ss_pred EEEEEEEecCCCCCCCCCCCceEEe--------cCCcEEEEEeCCCCCcCCCCcHHHHHH-HHHHHHHH--HHHcCCC-C
Q 010549 256 KLLSGACCLPHPDKEETGGEDAHFI--------SDKQAIGVADGVGGWANHGVNAGLYSR-ELMSNSVA--AIQEEPD-G 323 (507)
Q Consensus 256 ~l~~gs~~~s~~G~~R~~NEDa~~V--------~d~~lfaVaDGhGG~~~sg~~Ag~~As-~ll~~~i~--~l~~~~~-~ 323 (507)
.|.+|. +...++|-.|||+|.. +++.||||||||.|.. .+..++ .|+..++. .+....+ +
T Consensus 21 glryg~---SSMQGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~-----va~~c~~hLlehi~sse~F~~~~k~g 92 (379)
T KOG0697|consen 21 GLRYGV---SSMQGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQ-----VANHCAEHLLEHIISSEEFRGMTKNG 92 (379)
T ss_pred ceeeee---ccccchhhhhhhhhhhhhcCCCCccCceEEEEEcCccchH-----HHHHHHHHHHHHhhhhHHHhhhccCC
Confidence 466775 4445899999999976 4799999999999998 344433 33433322 2221111 1
Q ss_pred ------------CCCHHHHHHHHHHcc--CcCCCceEEEEEEeCCeEEEEEecCCcEEEEECCeEEEcCcccccc-----
Q 010549 324 ------------SIDPARVLEKAHSST--RAKGSSTACIIALTDQGLRAINLGDSGFVVVRDGCTVFRSPVQQHD----- 384 (507)
Q Consensus 324 ------------~~~~~e~L~~A~~~~--~~~GGSTavvalI~~~~L~VANVGDSRayLiRdG~li~lT~~q~~~----- 384 (507)
-....+.++...... ...+||||+++++...++|++|+||||++|+|+|+.++-|.+|...
T Consensus 93 sv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~Ek 172 (379)
T KOG0697|consen 93 SVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEK 172 (379)
T ss_pred cHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHH
Confidence 111223333322222 2347899999999999999999999999999999999988877432
Q ss_pred --------------cCCccceec--CC------------CCCCCCCceEEEEecC-CCCEEEEEccCCCCCCCHHHHHHH
Q 010549 385 --------------FNFTYQLEY--GS------------NSDLPSSGQVFTIPVA-PGDVIIAGTDGLFDNLYNNEITAV 435 (507)
Q Consensus 385 --------------~n~p~qL~~--g~------------~~d~p~~pdV~~i~L~-~gD~LVLaSDGLwD~Ls~eEI~~i 435 (507)
.|.....++ |. ..-+..+|++..+.-. ++|||||||||+||+|+++|++++
T Consensus 173 eRIqnAGGSVMIqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcef 252 (379)
T KOG0697|consen 173 ERIQNAGGSVMIQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEF 252 (379)
T ss_pred HHHhcCCCeEEEEEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHH
Confidence 121111111 00 0112346888888766 788999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhhcccCCCCcchhhhhhccccCCCCCCCceEEEEEEecCCCCCC
Q 010549 436 VVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYITNCEDEN 503 (507)
Q Consensus 436 V~~~~~~~~~~~~aA~~Lv~~A~~~a~d~~~~spf~~~a~~~g~~~~gGs~DNITVIVV~~~~~~~~~ 503 (507)
|+..+.-..++.++|..+++.++- .|++||||+|++.|-..++.+
T Consensus 253 v~sRl~Vt~dL~~vcn~VvDtCLh-----------------------KGSRDNMsivlvcfp~APkv~ 297 (379)
T KOG0697|consen 253 VKSRLEVTSDLEEVCNDVVDTCLH-----------------------KGSRDNMSIVLVCFPGAPKVS 297 (379)
T ss_pred HHhhheecccHHHHHHHHHHHHHh-----------------------ccCccCceEEEEecCCCCCCC
Confidence 999888888999999999999998 799999999999998776554
No 8
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=3.8e-28 Score=250.94 Aligned_cols=208 Identities=25% Similarity=0.300 Sum_probs=157.5
Q ss_pred CCCCCCCCCCceEEe-c-----------CCcEEEEEeCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Q 010549 266 HPDKEETGGEDAHFI-S-----------DKQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDGSIDPARVLEK 333 (507)
Q Consensus 266 ~~G~~R~~NEDa~~V-~-----------d~~lfaVaDGhGG~~~sg~~Ag~~As~ll~~~i~~l~~~~~~~~~~~e~L~~ 333 (507)
..++.|..|||.+.. . +..||||||||||.. +++|+++.+...+...........+..+++++
T Consensus 46 ~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~-----~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~ 120 (330)
T KOG0698|consen 46 SIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDL-----AAKFAAKHLHKNLLEQLAFPKDRQDVKDALRR 120 (330)
T ss_pred ecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHH-----HHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Confidence 445678899999877 1 257999999999999 99999977776655433332211235667777
Q ss_pred HHH-cc----------CcCCCceEEEEEEeCC-eEEEEEecCCcEEEEECC-eEEEcCccccccc---------------
Q 010549 334 AHS-ST----------RAKGSSTACIIALTDQ-GLRAINLGDSGFVVVRDG-CTVFRSPVQQHDF--------------- 385 (507)
Q Consensus 334 A~~-~~----------~~~GGSTavvalI~~~-~L~VANVGDSRayLiRdG-~li~lT~~q~~~~--------------- 385 (507)
+|. ++ ...+|||++++++.++ .|||||+|||||+|++.| ..+.+|.+|....
T Consensus 121 ~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~ 200 (330)
T KOG0698|consen 121 AFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVS 200 (330)
T ss_pred HHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEE
Confidence 776 23 2567889988888865 999999999999999866 7889998884311
Q ss_pred --CC-cc---ce--ec--CC----CCCCCCCceEEEEecCC-CCEEEEEccCCCCCCCHHHHHHHHHHHHHcCCCHHHHH
Q 010549 386 --NF-TY---QL--EY--GS----NSDLPSSGQVFTIPVAP-GDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTA 450 (507)
Q Consensus 386 --n~-p~---qL--~~--g~----~~d~p~~pdV~~i~L~~-gD~LVLaSDGLwD~Ls~eEI~~iV~~~~~~~~~~~~aA 450 (507)
.. ++ .| ++ |. ...+..+|++....+.+ ++||||+||||||+|+++|++++|+..+.....+..++
T Consensus 201 ~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~ 280 (330)
T KOG0698|consen 201 NWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAA 280 (330)
T ss_pred EcCCcceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHH
Confidence 00 11 11 11 11 02244578999999986 67999999999999999999999998754446788999
Q ss_pred HHHHHHHHhhhcccCCCCcchhhhhhccccCCCCCCCceEEEEEEecCCCC
Q 010549 451 QKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYITNCED 501 (507)
Q Consensus 451 ~~Lv~~A~~~a~d~~~~spf~~~a~~~g~~~~gGs~DNITVIVV~~~~~~~ 501 (507)
..|...|.. +|+.||||||||.|.....
T Consensus 281 ~~l~~~a~~-----------------------~~s~DnitvvvV~l~~~~~ 308 (330)
T KOG0698|consen 281 KLLATEALS-----------------------RGSKDNITVVVVRLKSSPK 308 (330)
T ss_pred HHHHHHHhh-----------------------cCCCCCeEEEEEEecCccc
Confidence 999999988 7999999999999998864
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.96 E-value=9.6e-28 Score=234.39 Aligned_cols=201 Identities=27% Similarity=0.325 Sum_probs=152.0
Q ss_pred CCCCCCCCCCCceEEe-c----CCcEEEEEeCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCC-CCCHHHHHHHHHHcc
Q 010549 265 PHPDKEETGGEDAHFI-S----DKQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDG-SIDPARVLEKAHSST 338 (507)
Q Consensus 265 s~~G~~R~~NEDa~~V-~----d~~lfaVaDGhGG~~~sg~~Ag~~As~ll~~~i~~l~~~~~~-~~~~~e~L~~A~~~~ 338 (507)
++.++.|..|||++++ . +..+|+|||||||.. +++++.+.+...+......... ..++.++|++++...
T Consensus 11 ~~~~~~r~~neD~~~~~~~~~~~~~~~~v~DG~gg~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (255)
T smart00332 11 SSMQGVRKPMEDAHVITPDLSDSGAFFGVFDGHGGSE-----AAKFLSKNLPEILAEELIKHKDELEDVEEALRKAFLKT 85 (255)
T ss_pred ecCCCCCCCCcceEEEeccCCCCeEEEEEEeCCCcHH-----HHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHHH
Confidence 6678899999999988 2 356999999999888 8888888877665543322211 123555565554332
Q ss_pred -------------CcCCCceEEEEEEeCCeEEEEEecCCcEEEEECCeEEEcCccccc-------------------ccC
Q 010549 339 -------------RAKGSSTACIIALTDQGLRAINLGDSGFVVVRDGCTVFRSPVQQH-------------------DFN 386 (507)
Q Consensus 339 -------------~~~GGSTavvalI~~~~L~VANVGDSRayLiRdG~li~lT~~q~~-------------------~~n 386 (507)
...+|||++++++.++.++++|+||||+|++|++++.++|.+|.. .++
T Consensus 86 ~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~ 165 (255)
T smart00332 86 DEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVINGRVN 165 (255)
T ss_pred HHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEECCeEC
Confidence 123579999999999999999999999999999999999988865 223
Q ss_pred CccceecCCCCC-----CCCCceEEEEec-CCCCEEEEEccCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 010549 387 FTYQLEYGSNSD-----LPSSGQVFTIPV-APGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQR 460 (507)
Q Consensus 387 ~p~qL~~g~~~d-----~p~~pdV~~i~L-~~gD~LVLaSDGLwD~Ls~eEI~~iV~~~~~~~~~~~~aA~~Lv~~A~~~ 460 (507)
....++...+.. ...+|++...++ +++|+||||||||||.++++++.+++.+.... .++.++|+.|++.|..
T Consensus 166 ~~~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~~-~~~~~~~~~l~~~a~~- 243 (255)
T smart00332 166 GVLALSRAIGDFFLKPYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLSK-SDPEEAAKRLIDLALA- 243 (255)
T ss_pred CeEecccccCCHhhcCCeEeeeEEEEEEecCCCcEEEEECCccccCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHH-
Confidence 223333211111 124578888885 89999999999999999999999999876322 3689999999999988
Q ss_pred hcccCCCCcchhhhhhccccCCCCCCCceEEEEE
Q 010549 461 AQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVS 494 (507)
Q Consensus 461 a~d~~~~spf~~~a~~~g~~~~gGs~DNITVIVV 494 (507)
++..||+|+||+
T Consensus 244 ----------------------~~~~Dn~T~ivv 255 (255)
T smart00332 244 ----------------------RGSKDNITVIVV 255 (255)
T ss_pred ----------------------cCCCCCeEEEEC
Confidence 688899999985
No 10
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.95 E-value=6.2e-29 Score=246.36 Aligned_cols=189 Identities=25% Similarity=0.352 Sum_probs=137.5
Q ss_pred CCCCCCCCCCCceEEe-c---------CCcEEEEEeCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 010549 265 PHPDKEETGGEDAHFI-S---------DKQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDGSIDPARVLEKA 334 (507)
Q Consensus 265 s~~G~~R~~NEDa~~V-~---------d~~lfaVaDGhGG~~~sg~~Ag~~As~ll~~~i~~l~~~~~~~~~~~e~L~~A 334 (507)
+...+.|+.|||.+++ . +..+|+|||||||.. ++++++..+...+......... .+..++|..+
T Consensus 5 ~~~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~-----~a~~~~~~l~~~l~~~~~~~~~-~~~~~al~~a 78 (254)
T PF00481_consen 5 SSMQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSE-----AAEYASQNLPEFLKENLSFNDG-NDIEEALRQA 78 (254)
T ss_dssp EEEECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSH-----HHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHH
T ss_pred ecCCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChh-----hHHHHHHHHHHHHHhhcccccc-cchhhcccce
Confidence 4455789999999988 2 357999999999999 9999998888655544332211 0345555555
Q ss_pred HHc-------------cCcCCCceEEEEEEeCCeEEEEEecCCcEEEEECCeEE-EcCcccccc----------------
Q 010549 335 HSS-------------TRAKGSSTACIIALTDQGLRAINLGDSGFVVVRDGCTV-FRSPVQQHD---------------- 384 (507)
Q Consensus 335 ~~~-------------~~~~GGSTavvalI~~~~L~VANVGDSRayLiRdG~li-~lT~~q~~~---------------- 384 (507)
|.+ ....+|||+++++|.+++||+||+||||+||++++... ++|.+|...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~ 158 (254)
T PF00481_consen 79 FLAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVS 158 (254)
T ss_dssp HHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEE
T ss_pred eeecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeeccccccc
Confidence 444 23567899999999999999999999999999999988 899887421
Q ss_pred ----cCCccceec--CCC-------CCCCCCceEEEEecCCCC-EEEEEccCCCCCCCHHHHHHHHHHHHHcCCCHHHHH
Q 010549 385 ----FNFTYQLEY--GSN-------SDLPSSGQVFTIPVAPGD-VIIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTA 450 (507)
Q Consensus 385 ----~n~p~qL~~--g~~-------~d~p~~pdV~~i~L~~gD-~LVLaSDGLwD~Ls~eEI~~iV~~~~~~~~~~~~aA 450 (507)
.+....+++ |.. ..+..+|++..+++.++| |||||||||||+|+++|+++++.+....+..|+.+|
T Consensus 159 ~~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a 238 (254)
T PF00481_consen 159 ENGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAA 238 (254)
T ss_dssp ETEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred cchhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 111111111 111 123357899999999886 999999999999999999999999876656799999
Q ss_pred HHHHHHHHh
Q 010549 451 QKIAALARQ 459 (507)
Q Consensus 451 ~~Lv~~A~~ 459 (507)
++|+++|+.
T Consensus 239 ~~L~~~A~~ 247 (254)
T PF00481_consen 239 EKLVDEAIA 247 (254)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999999
No 11
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.90 E-value=5.1e-23 Score=208.86 Aligned_cols=144 Identities=19% Similarity=0.307 Sum_probs=112.5
Q ss_pred CCceEEEEEEeCCeEEEEEecCCcEEEEECCeEEEcCccccc--------------------ccCCccceecC-------
Q 010549 342 GSSTACIIALTDQGLRAINLGDSGFVVVRDGCTVFRSPVQQH--------------------DFNFTYQLEYG------- 394 (507)
Q Consensus 342 GGSTavvalI~~~~L~VANVGDSRayLiRdG~li~lT~~q~~--------------------~~n~p~qL~~g------- 394 (507)
.|||+||+++.+++|+|||.|||||+|+|+|+.+.++.+|.+ +.|..+.|.+.
T Consensus 330 SGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLSRA~GDHaYK 409 (542)
T KOG0699|consen 330 SGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLSRAFGDHAYK 409 (542)
T ss_pred CCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecceecCccchhhhhhhhhhh
Confidence 479999999999999999999999999999999999887732 11221112110
Q ss_pred CCCCCC-------CCceEEEEecCC-CCEEEEEccCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcccCC
Q 010549 395 SNSDLP-------SSGQVFTIPVAP-GDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDR 466 (507)
Q Consensus 395 ~~~d~p-------~~pdV~~i~L~~-gD~LVLaSDGLwD~Ls~eEI~~iV~~~~~~~~~~~~aA~~Lv~~A~~~a~d~~~ 466 (507)
....+| ..|+|....|++ ++|+|++|||||+.|+.+|++++|+..+..+....++|+.|.+.++. .++..
T Consensus 410 ~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLA--p~T~G 487 (542)
T KOG0699|consen 410 KNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLA--PSTDG 487 (542)
T ss_pred cccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC--CCCCC
Confidence 111222 247999999995 46999999999999999999999999998888899999999999876 22221
Q ss_pred CCcchhhhhhccccCCCCCCCceEEEEEEecCCCCC
Q 010549 467 QTPFSTAAQDAGFRYYGGKLDDITVVVSYITNCEDE 502 (507)
Q Consensus 467 ~spf~~~a~~~g~~~~gGs~DNITVIVV~~~~~~~~ 502 (507)
.+-..|||||||+.|.+....
T Consensus 488 ---------------DGTGCDNMT~ii~~Fkrk~~e 508 (542)
T KOG0699|consen 488 ---------------DGTGCDNMTVIITTFKRKSKE 508 (542)
T ss_pred ---------------CCcCCCcceEEEEEeccchhh
Confidence 145779999999999865443
No 12
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-20 Score=195.61 Aligned_cols=183 Identities=24% Similarity=0.255 Sum_probs=124.9
Q ss_pred CCceEEe-----cCCcEEEEEeCCCCCcCCCCcHHHHHHHHHHHHHH-HH-----------HcCC---------------
Q 010549 274 GEDAHFI-----SDKQAIGVADGVGGWANHGVNAGLYSRELMSNSVA-AI-----------QEEP--------------- 321 (507)
Q Consensus 274 NEDa~~V-----~d~~lfaVaDGhGG~~~sg~~Ag~~As~ll~~~i~-~l-----------~~~~--------------- 321 (507)
.||.+-+ .++.|+||||||||.. +++|.+..+-..+. ++ ..+.
T Consensus 85 ~edrv~~~~s~~~~~~fvGIyDGhgGp~-----as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~ 159 (390)
T KOG0700|consen 85 EEDRVSVAVSEENGWLFVGIYDGHGGPD-----ASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQL 159 (390)
T ss_pred ccCcceeeeeccCCeEEEEEecCCCCcc-----HHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcc
Confidence 4776543 4678999999999999 88887665544333 11 1110
Q ss_pred ----CCCCCHHHHHHHHHHccC-----------------cCCCceEEEEEEeCCeEEEEEecCCcEEEEE---CC---eE
Q 010549 322 ----DGSIDPARVLEKAHSSTR-----------------AKGSSTACIIALTDQGLRAINLGDSGFVVVR---DG---CT 374 (507)
Q Consensus 322 ----~~~~~~~e~L~~A~~~~~-----------------~~GGSTavvalI~~~~L~VANVGDSRayLiR---dG---~l 374 (507)
.......++|.+||.++. ...|+|++++++.+..|||||+|||||+|.+ ++ ..
T Consensus 160 ~~~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A 239 (390)
T KOG0700|consen 160 SSADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVA 239 (390)
T ss_pred cccCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEE
Confidence 001234567777776541 3356999999999999999999999999965 33 24
Q ss_pred EEcCccccc-------------------------ccCCccceec--------------------------CCCCCCCCCc
Q 010549 375 VFRSPVQQH-------------------------DFNFTYQLEY--------------------------GSNSDLPSSG 403 (507)
Q Consensus 375 i~lT~~q~~-------------------------~~n~p~qL~~--------------------------g~~~d~p~~p 403 (507)
+++|.+|.- +..+..+..+ +..+-...+|
T Consensus 240 ~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP 319 (390)
T KOG0700|consen 240 VQLSTDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEP 319 (390)
T ss_pred EecChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccc
Confidence 677776621 0000000000 1111223478
Q ss_pred eEEEEecCCCC-EEEEEccCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhh
Q 010549 404 QVFTIPVAPGD-VIIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRA 461 (507)
Q Consensus 404 dV~~i~L~~gD-~LVLaSDGLwD~Ls~eEI~~iV~~~~~~~~~~~~aA~~Lv~~A~~~a 461 (507)
.++..+|.|.| |+||+||||||.|++||++++|.+.+.....-+.+|+.|+++|+..+
T Consensus 320 ~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 320 SITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred eEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 99999999766 99999999999999999999999876542344678999999999854
No 13
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.82 E-value=1.7e-19 Score=181.84 Aligned_cols=203 Identities=28% Similarity=0.318 Sum_probs=134.6
Q ss_pred CCcEEEEEeCCCCCcCCCCcHHHHHHHHHHHHHHH--------HHc-----------CCCC--------------CCCH-
Q 010549 282 DKQAIGVADGVGGWANHGVNAGLYSRELMSNSVAA--------IQE-----------EPDG--------------SIDP- 327 (507)
Q Consensus 282 d~~lfaVaDGhGG~~~sg~~Ag~~As~ll~~~i~~--------l~~-----------~~~~--------------~~~~- 327 (507)
++.+|.+||||.|.+ ++.+|+++++..+.. +.. .+.. .+..
T Consensus 143 ~~~~~slfdghags~-----~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E 217 (493)
T KOG1323|consen 143 DGALFSLFDGHAGSA-----VAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHE 217 (493)
T ss_pred cceeeeeecCCCcch-----HHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchH
Confidence 688999999999999 888898887765532 110 0000 0000
Q ss_pred ---HHHHHHHHHcc-----------CcCCCceEEEEEEeCCeEEEEEecCCcEEEEECCeEEEcCccc----------cc
Q 010549 328 ---ARVLEKAHSST-----------RAKGSSTACIIALTDQGLRAINLGDSGFVVVRDGCTVFRSPVQ----------QH 383 (507)
Q Consensus 328 ---~e~L~~A~~~~-----------~~~GGSTavvalI~~~~L~VANVGDSRayLiRdG~li~lT~~q----------~~ 383 (507)
.-+|+.||.++ ...||||+++++.--++||++|.||||++|+|+++++.++.+- ..
T Consensus 218 ~LViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ~L 297 (493)
T KOG1323|consen 218 HLVIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQEL 297 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHHHHHHHHHH
Confidence 12566676553 4678999999999999999999999999999999987765421 00
Q ss_pred cc-------------CCccce-----------------------------------------------e--cCC------
Q 010549 384 DF-------------NFTYQL-----------------------------------------------E--YGS------ 395 (507)
Q Consensus 384 ~~-------------n~p~qL-----------------------------------------------~--~g~------ 395 (507)
.| ..|.++ + .|.
T Consensus 298 af~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lk 377 (493)
T KOG1323|consen 298 AFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLK 377 (493)
T ss_pred hhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceee
Confidence 00 000000 0 000
Q ss_pred -----C---CCCCCCceEEEEecC-----CCCEEEEEccCCCCCCCHHHHHHHHHHHHHcCC--CH---HHHHHHHHHHH
Q 010549 396 -----N---SDLPSSGQVFTIPVA-----PGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGL--GP---QVTAQKIAALA 457 (507)
Q Consensus 396 -----~---~d~p~~pdV~~i~L~-----~gD~LVLaSDGLwD~Ls~eEI~~iV~~~~~~~~--~~---~~aA~~Lv~~A 457 (507)
. ......|++...+|. ++|++||+||||||+++++|+..+|...+-... +| ..+|+.|+..|
T Consensus 378 v~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~a 457 (493)
T KOG1323|consen 378 VVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAA 457 (493)
T ss_pred eecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHh
Confidence 0 011134666666553 789999999999999999999999998764332 33 35789999988
Q ss_pred HhhhcccCCCCcchhhhhhccccCCCCCCCceEEEEEEecCC
Q 010549 458 RQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYITNC 499 (507)
Q Consensus 458 ~~~a~d~~~~spf~~~a~~~g~~~~gGs~DNITVIVV~~~~~ 499 (507)
....+|+.|.-+ .-.-|+.|||||.||-+.-.
T Consensus 458 rg~~k~rgWr~~----------n~~lgSgDDIsVfVIPL~~~ 489 (493)
T KOG1323|consen 458 RGQQKDRGWRMN----------NGGLGSGDDISVFVIPLKYC 489 (493)
T ss_pred cCccCCCceecc----------CCCcCCCCceEEEEEeccCC
Confidence 775555433211 01235779999999988654
No 14
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.75 E-value=1.1e-17 Score=160.51 Aligned_cols=168 Identities=23% Similarity=0.272 Sum_probs=96.2
Q ss_pred cCCCCCCCCCCCceEEe---cCCcEEEEEeCCCCCcCCCCcHHHHHHHHHHHHHHH-HHcCCCCCC-C-HHHHHH----H
Q 010549 264 LPHPDKEETGGEDAHFI---SDKQAIGVADGVGGWANHGVNAGLYSRELMSNSVAA-IQEEPDGSI-D-PARVLE----K 333 (507)
Q Consensus 264 ~s~~G~~R~~NEDa~~V---~d~~lfaVaDGhGG~~~sg~~Ag~~As~ll~~~i~~-l~~~~~~~~-~-~~e~L~----~ 333 (507)
.+|.+ +++.|||++.+ ++..+++||||+||.. .++.++.++...+.. +........ . ..++++ +
T Consensus 3 ~sh~~-~~~~nqD~~~~~~~~~~~~~aVaDG~g~~~-----~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 76 (212)
T PF13672_consen 3 RSHRG-RGAPNQDAFGIRTDDDGNLAAVADGVGGSP-----YGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKE 76 (212)
T ss_dssp ----T-TSSS--EEEEEE-TCCTCEEEEEEEESTTT-----HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred ccccC-CCCCCCCCEEeeeCCCCEEEEEEECCCCCc-----hhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 46776 47999999987 5677889999999998 777777776666543 333332111 1 112222 2
Q ss_pred HHH------------ccCcCCCceEEEEEEeCCeEEEEEecCCcEE-EEECCeEEEcCcccccccC-CccceecCCCCCC
Q 010549 334 AHS------------STRAKGSSTACIIALTDQGLRAINLGDSGFV-VVRDGCTVFRSPVQQHDFN-FTYQLEYGSNSDL 399 (507)
Q Consensus 334 A~~------------~~~~~GGSTavvalI~~~~L~VANVGDSRay-LiRdG~li~lT~~q~~~~n-~p~qL~~g~~~d~ 399 (507)
.+. ......+||++++++.++.++++|+||||+| +.++|++..++.++...+. ....+.. .+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~~~~~~~~~~---~~~ 153 (212)
T PF13672_consen 77 ILSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGEYPNQTRSLTG---DDP 153 (212)
T ss_dssp HHHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHHHHHCTTSCCH---HCC
T ss_pred HHHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccchhhhhhhccCc---ccc
Confidence 221 1122345999999999999999999999996 4689999888877653322 1111211 122
Q ss_pred CCCceEEEEecCCCCEEEEEccCCCCCCCHHH-HHHHHHHHH
Q 010549 400 PSSGQVFTIPVAPGDVIIAGTDGLFDNLYNNE-ITAVVVHAM 440 (507)
Q Consensus 400 p~~pdV~~i~L~~gD~LVLaSDGLwD~Ls~eE-I~~iV~~~~ 440 (507)
....++..++++++|.|||||||||+.+..++ +..++.+.+
T Consensus 154 ~~~~~~~~~~~~~~d~ilL~SDG~~~~l~~~~~~~~~l~~~~ 195 (212)
T PF13672_consen 154 EPDVQYGSIPLEEGDVILLCSDGVWDNLRSYEDLEQFLKDLW 195 (212)
T ss_dssp CTETEEEEEE--TT-EEEEE-HHHHTTS-HHHHHHHH-----
T ss_pred ccCCeEEEEEcCCCCEEEEECcCccccCCCHHHHHHHhhhcc
Confidence 23357778889999999999999999998655 667776654
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.74 E-value=1.6e-16 Score=150.29 Aligned_cols=168 Identities=21% Similarity=0.227 Sum_probs=118.3
Q ss_pred CCCCCceEEe---c-CCcEEEEEeCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcc----CcCC
Q 010549 271 ETGGEDAHFI---S-DKQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDGSIDPARVLEKAHSST----RAKG 342 (507)
Q Consensus 271 R~~NEDa~~V---~-d~~lfaVaDGhGG~~~sg~~Ag~~As~ll~~~i~~l~~~~~~~~~~~e~L~~A~~~~----~~~G 342 (507)
+..+.|.+.+ + +..+++|+||||+.. ++.+++..+...+..+.... ..+.++++...... ....
T Consensus 14 ~~~~GD~~~~~~~~~~~~~~~v~Dg~G~G~-----~aa~~s~~~~~~~~~~~~~~---~~~~~~l~~~n~~l~~~~~~~~ 85 (193)
T smart00331 14 TQVGGDFYDVVKLPEGRLLIAIADVMGKGL-----AAALAMSMARSALRTLLSEG---ISLSQILERLNRAIYENGEDGM 85 (193)
T ss_pred HhcCccEEEEEEeCCCeEEEEEEecCCCCh-----HHHHHHHHHHHHHHHHhhcC---CCHHHHHHHHHHHHHhcCCCCc
Confidence 5778999876 3 468899999999655 45555555555554443322 34666665554332 2334
Q ss_pred CceEEEEEE--eCCeEEEEEecCCcEEEEE-CCeEEEcCcccccccCCccceecCCCCCCCCCceEEEEecCCCCEEEEE
Q 010549 343 SSTACIIAL--TDQGLRAINLGDSGFVVVR-DGCTVFRSPVQQHDFNFTYQLEYGSNSDLPSSGQVFTIPVAPGDVIIAG 419 (507)
Q Consensus 343 GSTavvalI--~~~~L~VANVGDSRayLiR-dG~li~lT~~q~~~~n~p~qL~~g~~~d~p~~pdV~~i~L~~gD~LVLa 419 (507)
++|++++++ ..++++++|+||+|+++++ ++..+..+... ...++. ..+ .+++...+++++||+|+|+
T Consensus 86 ~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~------~~~lG~--~~~--~~~~~~~~~l~~gd~l~l~ 155 (193)
T smart00331 86 FATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDL------GAPLGL--EPD--VEVDVRELTLEPGDLLLLY 155 (193)
T ss_pred EEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCC------Cceeee--CCC--CcceeEEEeeCCCCEEEEE
Confidence 699999888 4668999999999999999 55555444321 111322 122 2357888899999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 010549 420 TDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALAR 458 (507)
Q Consensus 420 SDGLwD~Ls~eEI~~iV~~~~~~~~~~~~aA~~Lv~~A~ 458 (507)
||||||.++++++.+++.+.. ..++++++++|++.+.
T Consensus 156 TDGl~e~~~~~~l~~~l~~~~--~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 156 TDGLTEARNPERLEELLEELL--GSPPAEIAQRILEELL 192 (193)
T ss_pred CCCccccCChHHHHHHHHHhc--CCCHHHHHHHHHHHHh
Confidence 999999999999999998763 3578999999988764
No 16
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.65 E-value=6.1e-15 Score=167.71 Aligned_cols=204 Identities=16% Similarity=0.209 Sum_probs=140.2
Q ss_pred cCCcceEEEEEEEecCCCCCCCCCCCceEEe---c-CCcEEEEEeCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCC
Q 010549 250 SAGKTLKLLSGACCLPHPDKEETGGEDAHFI---S-DKQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDGSI 325 (507)
Q Consensus 250 ~~~~~l~l~~gs~~~s~~G~~R~~NEDa~~V---~-d~~lfaVaDGhGG~~~sg~~Ag~~As~ll~~~i~~l~~~~~~~~ 325 (507)
....++++.+|.+..+++| +..++|.+.+ + +..+++|+||+|... .+..++..+.+.++.+.+. ..
T Consensus 545 ~e~~~~~~~~g~a~~~k~g--~~vsGD~y~~~~l~~g~~~~~laDGmGhG~-----~Aa~~S~~~~~ll~~~~~~---g~ 614 (764)
T TIGR02865 545 EETPKYHVSTGVARAAKDG--ELVSGDSYSFGKLSAGKYAVAISDGMGSGP-----EAAQESSACVRLLEKFLES---GF 614 (764)
T ss_pred ecCCceeehhhHHHhcCCC--CcccCceEEEEEECCCEEEEEEEcccCCCH-----HHHHHHHHHHHHHHHHHHc---CC
Confidence 3445688888887777666 7899999876 3 345789999999554 4444455555555544432 23
Q ss_pred CHHHHHHHHHHc----cCcCCCceEEEEEEe--CCeEEEEEecCCcEEEEECCeEEEcCcccccccCCccceecCCCCCC
Q 010549 326 DPARVLEKAHSS----TRAKGSSTACIIALT--DQGLRAINLGDSGFVVVRDGCTVFRSPVQQHDFNFTYQLEYGSNSDL 399 (507)
Q Consensus 326 ~~~e~L~~A~~~----~~~~GGSTavvalI~--~~~L~VANVGDSRayLiRdG~li~lT~~q~~~~n~p~qL~~g~~~d~ 399 (507)
++.++++..... ......+|+.+++++ .+.+.++|+||++.|+.|++++...+.. +.| + |...+
T Consensus 615 ~~~~ai~~lN~~L~~~~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~-----~lP--l--Gil~~- 684 (764)
T TIGR02865 615 DREVAIKTVNSILSLRSTDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSS-----NLP--I--GILDE- 684 (764)
T ss_pred CHHHHHHHHHHHHHhCCCCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCC-----Cce--e--EeccC-
Confidence 566666554332 122224899988887 4589999999999999999887654321 112 2 22222
Q ss_pred CCCceEEEEecCCCCEEEEEccCCCCCCCHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcccCCCCcchhhh
Q 010549 400 PSSGQVFTIPVAPGDVIIAGTDGLFDNLYNNE-----ITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAA 474 (507)
Q Consensus 400 p~~pdV~~i~L~~gD~LVLaSDGLwD~Ls~eE-----I~~iV~~~~~~~~~~~~aA~~Lv~~A~~~a~d~~~~spf~~~a 474 (507)
.+++..+.++++||+|||+||||||...+++ +.+++.+. ...+|+++++.|++.|.+...
T Consensus 685 -~~~~~~~~~L~~GD~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~--~~~~p~ela~~Il~~a~~~~~------------ 749 (764)
T TIGR02865 685 -VDVELVRKKLKNGDLIVMVSDGVLEGEKEVEGKVLWLVRKLKET--NTNDPEEIAEYLLEKAKELRS------------ 749 (764)
T ss_pred -CccceEEEEeCCCCEEEEECCCCCcCCcccccHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhcC------------
Confidence 2467788899999999999999999876533 55555432 246899999999999987211
Q ss_pred hhccccCCCCCCCceEEEEEEe
Q 010549 475 QDAGFRYYGGKLDDITVVVSYI 496 (507)
Q Consensus 475 ~~~g~~~~gGs~DNITVIVV~~ 496 (507)
+...||+|++++++
T Consensus 750 --------~~~~DD~Tvlvirv 763 (764)
T TIGR02865 750 --------GKIKDDMTVIVAKV 763 (764)
T ss_pred --------CCCCCCeEEEEEEe
Confidence 23479999999986
No 17
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.52 E-value=1.6e-12 Score=122.36 Aligned_cols=174 Identities=28% Similarity=0.346 Sum_probs=111.3
Q ss_pred CcEEEEEeCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcc----CcC-CCceEEEEEEeC--Ce
Q 010549 283 KQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDGSIDPARVLEKAHSST----RAK-GSSTACIIALTD--QG 355 (507)
Q Consensus 283 ~~lfaVaDGhGG~~~sg~~Ag~~As~ll~~~i~~l~~~~~~~~~~~e~L~~A~~~~----~~~-GGSTavvalI~~--~~ 355 (507)
..++.|+|++|- |+.|+.++..+. ..++.+.... .++.++++...+.. ... ..+|++++.++. +.
T Consensus 4 ~~~~~v~D~~Gh----G~~aa~~~~~~~-~~~~~~~~~~---~~p~~~l~~ln~~l~~~~~~~~~~~t~~~~~~d~~~~~ 75 (193)
T PF07228_consen 4 RYFIIVGDVSGH----GVSAALLSAALA-SAIRELLDEG---LDPEELLEALNRRLYRDLKGDNRYATACYAIIDPETGT 75 (193)
T ss_dssp EEEEEEEEESSS----SHHHHHHHHHHH-HHHHHHHHTT---TSHHHHHHHHHHHHHHHTTTTSTTEEEEEEEEETTTTE
T ss_pred EEEEEEEEecCC----CHHHHHHHHHHH-HHHHHHHHcC---CCHHHHHHHHHHHHHHHhhhccccceEEEEEecccceE
Confidence 457799999992 333555554443 3444443322 34777777665443 333 458888888874 37
Q ss_pred EEEEEecCCcEEEEECCe--EEEcCcccccccCCccceecCCCCCCCCCceEEEEecCCCCEEEEEccCCCCCCCHH---
Q 010549 356 LRAINLGDSGFVVVRDGC--TVFRSPVQQHDFNFTYQLEYGSNSDLPSSGQVFTIPVAPGDVIIAGTDGLFDNLYNN--- 430 (507)
Q Consensus 356 L~VANVGDSRayLiRdG~--li~lT~~q~~~~n~p~qL~~g~~~d~p~~pdV~~i~L~~gD~LVLaSDGLwD~Ls~e--- 430 (507)
++++|+|+++++++|+++ ..... ..+.| + |...+ .+....++++++||.|+|+||||+|....+
T Consensus 76 l~~~~aG~~~~l~~~~~~~~~~~~~-----~~~~~--l--G~~~~--~~~~~~~~~l~~gd~l~l~TDGl~e~~~~~~~~ 144 (193)
T PF07228_consen 76 LTYANAGHPPPLLLRPGGREIEQLE-----SEGPP--L--GIFED--IDYQEQEIQLEPGDRLLLYTDGLFEALNEDGEF 144 (193)
T ss_dssp EEEEEESSSEEEEEETTCTEEEEET-----CSSBB--C--SSSCT--TCEEEEEEE--TTEEEEEECHHHCTTTCHHCHH
T ss_pred EEEeCCCCCCEEEEeccccceeecc-----cCccc--e--eeecc--ccccceEEEeccccEEEEeCCChhhccCCccch
Confidence 999999999999999843 22211 11222 2 22222 346778899999999999999999998543
Q ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcccCCCCcchhhhhhccccCCCCCCCceEEEEEEec
Q 010549 431 ----EITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYIT 497 (507)
Q Consensus 431 ----EI~~iV~~~~~~~~~~~~aA~~Lv~~A~~~a~d~~~~spf~~~a~~~g~~~~gGs~DNITVIVV~~~ 497 (507)
++.+++.+. ...+++++++.|++.+... + .+...||+|+++++++
T Consensus 145 ~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~~~--~------------------~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 145 FGEERLLELLDEN--RGLSPQEIIDALLEAIDRF--G------------------KGPLRDDITVLVIRRQ 193 (193)
T ss_dssp CCCHHHHHHHHCH--TTS-HHHHHHHHHHHHHHH--T------------------TSSTSS-EEEEEEEE-
T ss_pred hHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHh--c------------------CCCCCCceEEEEEEEC
Confidence 334444433 3467899999999987761 1 1467799999999874
No 18
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.80 E-value=3.5e-07 Score=96.04 Aligned_cols=186 Identities=22% Similarity=0.227 Sum_probs=120.0
Q ss_pred CCCceEEe---c-CCcEEEEEeCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHH---HHccCc-CCCc
Q 010549 273 GGEDAHFI---S-DKQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDGSIDPARVLEKA---HSSTRA-KGSS 344 (507)
Q Consensus 273 ~NEDa~~V---~-d~~lfaVaDGhGG~~~sg~~Ag~~As~ll~~~i~~l~~~~~~~~~~~e~L~~A---~~~~~~-~GGS 344 (507)
.+.|.|-+ . +...++|.|.+| .|+.|+.. ..........+... ...++.++|+.. +..... .--+
T Consensus 161 vGGD~yd~~~~~~~~~~i~I~DvsG----~Gv~aal~-m~~~~~~~~~~~~~--~~~~p~~~l~~~n~~~~~~~~~~~f~ 233 (367)
T COG2208 161 VGGDYYDFIQLGEKRLRIGIGDVSG----KGVPAALL-MLMPKLALRLLLES--GPLDPADVLETLNRVLKQNLEEDMFV 233 (367)
T ss_pred cCCceEEEEEECCcEEEEEEEeccC----CCHHHHHH-HHHHHHHHHHhhhc--ccCCHHHHHHHHHHHHHhcccCCcEE
Confidence 67888755 3 467889999888 22334444 22222223333332 145677776664 333222 1238
Q ss_pred eEEEEEEeC--CeEEEEEecCCcEEEEECCeE---EEcCcccccccCCccceecCCCCCCCCCceEEEEecCCCCEEEEE
Q 010549 345 TACIIALTD--QGLRAINLGDSGFVVVRDGCT---VFRSPVQQHDFNFTYQLEYGSNSDLPSSGQVFTIPVAPGDVIIAG 419 (507)
Q Consensus 345 TavvalI~~--~~L~VANVGDSRayLiRdG~l---i~lT~~q~~~~n~p~qL~~g~~~d~p~~pdV~~i~L~~gD~LVLa 419 (507)
|+...+++- +.+.++|+|.-..++.+.++. ..+.. .. +..|...+. .+.+...++++||.+||.
T Consensus 234 T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~~-----~g----~piG~~~~~--~~~~~~~~l~~gd~lvl~ 302 (367)
T COG2208 234 TLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLTA-----LG----LPIGLLPDY--QYEVASLQLEPGDLLVLY 302 (367)
T ss_pred EEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEccC-----CC----ceeeecCCc--cchheeEEecCCCEEEEE
Confidence 888888874 489999999999999997653 22111 01 111222222 357788899999999999
Q ss_pred ccCCCC-------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcccCCCCcchhhhhhccccCCCCCCCceEEE
Q 010549 420 TDGLFD-------NLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVV 492 (507)
Q Consensus 420 SDGLwD-------~Ls~eEI~~iV~~~~~~~~~~~~aA~~Lv~~A~~~a~d~~~~spf~~~a~~~g~~~~gGs~DNITVI 492 (507)
||||.| .+..+...+.+... .+.+++++++.+.+...+..-+ ....||||++
T Consensus 303 tDGv~Ea~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~i~~~l~~~~~~-------------------~~~~DDiTll 361 (367)
T COG2208 303 TDGVTEARNSDGEFFGLERLLKILGRL--LGQPAEEILEAILESLEELQGD-------------------QIQDDDITLL 361 (367)
T ss_pred cCCeeeeecCCccEecHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHhhCC-------------------ccccCceEEE
Confidence 999998 55567777777652 3568999999999988773222 2345889999
Q ss_pred EEEec
Q 010549 493 VSYIT 497 (507)
Q Consensus 493 VV~~~ 497 (507)
++++.
T Consensus 362 ~lk~~ 366 (367)
T COG2208 362 VLKVK 366 (367)
T ss_pred EEEec
Confidence 99975
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.80 E-value=2e-08 Score=113.72 Aligned_cols=185 Identities=16% Similarity=0.196 Sum_probs=117.7
Q ss_pred CCcEEEEEeCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcc-------CcCCCceEEEEEEeCC
Q 010549 282 DKQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDGSIDPARVLEKAHSST-------RAKGSSTACIIALTDQ 354 (507)
Q Consensus 282 d~~lfaVaDGhGG~~~sg~~Ag~~As~ll~~~i~~l~~~~~~~~~~~e~L~~A~~~~-------~~~GGSTavvalI~~~ 354 (507)
....|+.+||-+-.. ...+....+...+ .++-....+..+.|..+|... ...-|..++.+.|..+
T Consensus 550 ~~a~~g~~dgs~n~~-----v~~~vq~~ma~~L---~eev~~~~~et~~mr~~fl~~~rklg~~g~~lg~~~~~~~i~~d 621 (1081)
T KOG0618|consen 550 PQATFGCFDGSRNSR-----VLSLVQDTMASYL---AEEVQLYGNETEQMRNTFLRLNRKLGEEGQVLGGSVVLCQIVED 621 (1081)
T ss_pred CcceEEEEcCCCchh-----HHHHHHHHHHHHH---HHHHHhccChHHHHHHHHHHHhhhhhhhhccccchhhheeeccc
Confidence 467899999977443 2222222222222 221111122333455554432 1122344444445433
Q ss_pred --------eEEEEEecCCcEEEEECCeEEEcCccccc--------------cc-C----------Cccceec-CCCCCCC
Q 010549 355 --------GLRAINLGDSGFVVVRDGCTVFRSPVQQH--------------DF-N----------FTYQLEY-GSNSDLP 400 (507)
Q Consensus 355 --------~L~VANVGDSRayLiRdG~li~lT~~q~~--------------~~-n----------~p~qL~~-g~~~d~p 400 (507)
.+.+||+|+|.++++++|+....|..+.+ .+ + ..+.++. -.....-
T Consensus 622 ~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l~P~v~ 701 (1081)
T KOG0618|consen 622 SLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKGFITEDNKLNGVTSSTRAIGPFSLFPHVL 701 (1081)
T ss_pred ccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcCeecCCCeeeceeeeeeeccccccccccc
Confidence 69999999999999999986555443211 11 0 0111111 0111222
Q ss_pred CCceEEEEecC-CCCEEEEEccCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcccCCCCcchhhhhhccc
Q 010549 401 SSGQVFTIPVA-PGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGF 479 (507)
Q Consensus 401 ~~pdV~~i~L~-~gD~LVLaSDGLwD~Ls~eEI~~iV~~~~~~~~~~~~aA~~Lv~~A~~~a~d~~~~spf~~~a~~~g~ 479 (507)
..|+|..+.|. .+++||++.-+||++|+-+++++.+++. .+|=.+|++|.+.|..
T Consensus 702 p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~----~dpL~AAkKL~d~AqS-------------------- 757 (1081)
T KOG0618|consen 702 PDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNV----EDPLLAAKKLCDLAQS-------------------- 757 (1081)
T ss_pred CCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhcC----CchHHHHHHHHHHHHh--------------------
Confidence 46899999998 5669999999999999999999999853 7899999999999988
Q ss_pred cCCCCCCCceEEEEEEecCCCC
Q 010549 480 RYYGGKLDDITVVVSYITNCED 501 (507)
Q Consensus 480 ~~~gGs~DNITVIVV~~~~~~~ 501 (507)
=|..||++|+||++....+
T Consensus 758 ---Ygc~~nv~vlVv~l~~~~~ 776 (1081)
T KOG0618|consen 758 ---YGCAENVSVLVVRLNHLEE 776 (1081)
T ss_pred ---cccccCeeEEEEEeecchh
Confidence 4888999999999876543
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=74.08 E-value=38 Score=34.72 Aligned_cols=99 Identities=13% Similarity=0.062 Sum_probs=55.0
Q ss_pred CCCceEEe----cCCcEEEEEe--CCCCCcCCCCcHHHHHHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH---ccCcCC
Q 010549 273 GGEDAHFI----SDKQAIGVAD--GVGGWANHGVNAGLYSRELMSNSVAAIQ-EEPDGSIDPARVLEKAHS---STRAKG 342 (507)
Q Consensus 273 ~NEDa~~V----~d~~lfaVaD--GhGG~~~sg~~Ag~~As~ll~~~i~~l~-~~~~~~~~~~e~L~~A~~---~~~~~G 342 (507)
.+.|.+-+ ++...|-++| ||||++ ..++.....++...+.... .......++.++++.... .....+
T Consensus 149 ~~GD~~d~~~l~~~~~~~~~~DvsGhg~hg---~~aa~l~~~~~~~~~~~~~~~~~~~~~~p~~~l~~lN~~l~~~~~~~ 225 (303)
T PRK10693 149 KPGLVLDIAALSDNDLAFYCLDVTRAGDNG---VLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPG 225 (303)
T ss_pred CCccEEeeeecCCCcEEEEEEecCCCCccc---HHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHhcCCCc
Confidence 46787755 3555666777 666665 2233333333332333221 111112357777665443 332222
Q ss_pred CceEEEEEEeCC--eEEEEEecCCcEEEEECCeE
Q 010549 343 SSTACIIALTDQ--GLRAINLGDSGFVVVRDGCT 374 (507)
Q Consensus 343 GSTavvalI~~~--~L~VANVGDSRayLiRdG~l 374 (507)
.-|++.++++.. .+.++|.|....++..+++.
T Consensus 226 ~~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 226 QFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred eeeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 368888888854 79999999999886444443
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=32.03 E-value=24 Score=29.17 Aligned_cols=14 Identities=29% Similarity=0.807 Sum_probs=13.1
Q ss_pred CCCEEEEEccCCCC
Q 010549 412 PGDVIIAGTDGLFD 425 (507)
Q Consensus 412 ~gD~LVLaSDGLwD 425 (507)
+|..+|+++||+|=
T Consensus 26 ~G~Rllva~nGv~l 39 (72)
T PF09436_consen 26 PGHRLLVASNGVFL 39 (72)
T ss_pred CCcEEEEecCcEEE
Confidence 89999999999994
No 22
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=27.92 E-value=92 Score=30.54 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=36.3
Q ss_pred CCCCEEEEEccCCC-----------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 010549 411 APGDVIIAGTDGLF-----------DNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQ 459 (507)
Q Consensus 411 ~~gD~LVLaSDGLw-----------D~Ls~eEI~~iV~~~~~~~~~~~~aA~~Lv~~A~~ 459 (507)
.-+|.+|..|.|+| |.|.++..-+.+.....+..=|+++|+.|++.-.+
T Consensus 69 DIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~ 128 (237)
T COG3700 69 DIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQR 128 (237)
T ss_pred ccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHh
Confidence 56789999999997 66777777777665433334589999999997655
No 23
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=27.19 E-value=97 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 010549 427 LYNNEITAVVVHAMRAGLGPQVTAQKIAA 455 (507)
Q Consensus 427 Ls~eEI~~iV~~~~~~~~~~~~aA~~Lv~ 455 (507)
-+++||...+.++ +.+|.+++++|+.
T Consensus 19 hse~eIya~L~ec---nMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKEC---NMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHh---CCCHHHHHHHHHh
Confidence 6889999999987 6899999999986
Done!