BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010550
(507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 61/142 (42%), Gaps = 20/142 (14%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSL----TGEXXXXXXXXXXXXXXXXEWNENFKL 320
IL VKVV L KKD G SDPYVKLSL +WNE F
Sbjct: 22 ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL--------TPHETKEFTLDLLKHT 372
V P + L +VFD +++ D LG VPL L P+ K+F L H
Sbjct: 82 RVN-PSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRPRSHK 140
Query: 373 NISDPKDMKQRGKIVVELTYVP 394
+ + +G + +++ Y+P
Sbjct: 141 S-------RVKGFLRLKMAYMP 155
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 17/82 (20%)
Query: 423 EALSGAGLLSVLVQGAEDVEGENHNNPYA-IILYKGDKKR------TKMIRKTRDPAWNE 475
+ +SG L + GA D PY + LY D+ R TK I+KT +P WNE
Sbjct: 26 KVVSGIDLAKKDIFGASD--------PYVKLSLYVADENRELALVQTKTIKKTLNPKWNE 77
Query: 476 EFQFMLDEPPLHEKIHIEVMSK 497
EF F ++ P + ++ EV +
Sbjct: 78 EFYFRVN--PSNHRLLFEVFDE 97
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWN 315
SV L VK+++A +L KDF GTSDP+VK+ L + WN
Sbjct: 18 SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 77
Query: 316 ENF---KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
E F ++ +IL LQV D+D+ +D +G +PL + + + F DL
Sbjct: 78 ETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSL---TGEXXXXXXXXXXXXXXXXEWNENFKLV 321
I+ V+V+ L KKD LG SDPYV+++L +WNE
Sbjct: 21 IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPL--------KLLTPHETKEFTLDLLKHTN 373
V P+ L +VFD +++ D LG VPL +L P+ K+F L H +
Sbjct: 81 V-HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS 139
Query: 374 ISDPKDMKQRGKIVVELTYVP 394
+ +G + +++TY+P
Sbjct: 140 -------RVKGYLRLKMTYLP 153
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKL 320
K VGIL VKV++A+ LL DF G SDP+ L L + EWN+ F
Sbjct: 10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGND---RLQTHTVYKNLNPEWNKVFTF 66
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPL 353
+K+ +L++ VFD D D LG +PL
Sbjct: 67 PIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPL 98
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 429 GLLSVLVQGAEDV---EGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP 485
G+L V V A D+ + ++P+ ++ D+ +T + K +P WN+ F F + +
Sbjct: 13 GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKD-- 70
Query: 486 LHEKIHIEVMSK 497
+H+ + + V +
Sbjct: 71 IHDVLEVTVFDE 82
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLV 321
P G L V +V A L DFL DPYV+ LT EWNE F
Sbjct: 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQ--LTCRTQDQKSNVAEGMGTTPEWNETFIFT 65
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMK 381
V E ++ L+ ++FD D D +G +PL+ + F + T + KD +
Sbjct: 66 VSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPV-------FVEGSIPPTAYNVVKDEE 117
Query: 382 QRGKIVVELTYVP 394
+G+I V L++ P
Sbjct: 118 YKGEIWVALSFKP 130
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXX---XXXXXXXXXXXXXXEWNENFKLV 321
++ VKV+ L KKD LG SDPYV+++L +WNE
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPL--------KLLTPHETKEFTLDLLKHTN 373
V P+ + +VFD +++ D LG VPL ++ P+ K+F L H +
Sbjct: 69 VL-PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS 127
Query: 374 ISDPKDMKQRGKIVVELTYVP 394
+ +G + +++TY+P
Sbjct: 128 -------RVKGYLRLKMTYLP 141
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVV--K 323
L V +++A++L D GTSDPYVK+ L + +NE F V
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLT-PHETKEFTLDLLKHTNISDPKDMKQ 382
E + L + V+D+D+ HD +G VP+ + H T+E+ + ++ ++ ++
Sbjct: 81 ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEW-----RDLQSAEKEEQEK 135
Query: 383 RGKIVVELTYVP 394
G I L YVP
Sbjct: 136 LGDICFSLRYVP 147
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEXXXXXXXXXXXXXXXXEWNENFKL 320
G L V ++ A L K D G SDPYVK+ L G+ +NE+F
Sbjct: 149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 208
Query: 321 VVKEPESQILQLQ----VFDWDKVGGHDRLGMQLV 351
V P QI ++Q V D+DK+G +D +G V
Sbjct: 209 EV--PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 241
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 415 GNDQSSDEEALSGAGLLSVLVQGAE----DVEGENHNNPYAIILYKGDKKR---TKMIRK 467
G Q S + LL ++Q AE D+ G + +PY + DKK+ TK+ RK
Sbjct: 6 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTS--DPYVKVFLLPDKKKKFETKVHRK 63
Query: 468 TRDPAWNEEFQF 479
T +P +NE+F F
Sbjct: 64 TLNPVFNEQFTF 75
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXX--EWNENFKLVVK 323
LHV V A L+ D G SDPYVKL L + +WNE+F +K
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 324 -EPESQILQLQVFDWDKVGGHDRLG 347
+ + L ++++DWD+ +D +G
Sbjct: 78 PSDKDRRLSVEIWDWDRTTRNDFMG 102
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 459 KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEV 494
K++TK IR T +P WNE F F L ++ +E+
Sbjct: 54 KQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEI 89
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXX--EWNENFKLVVK 323
LHV V A L+ D G SDPYVKL L + +WNE+F +K
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 324 -EPESQILQLQVFDWDKVGGHDRLG 347
+ + L ++++DWD+ +D +G
Sbjct: 79 PSDKDRRLSVEIWDWDRTTRNDFMG 103
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 459 KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEV 494
K++TK IR T +P WNE F F L ++ +E+
Sbjct: 55 KQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEI 90
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXE--WNEN--F 318
G+L V +++AS L D G SDPYVK SL E +NE F
Sbjct: 152 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 211
Query: 319 KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359
+ + E+ L + V D+D +G ++ +G+ V + PH
Sbjct: 212 DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH 252
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 51/227 (22%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVV--K 323
L V++++A L KD G SDPYVK+ L + +NE F+ V
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHET---KEFTLDLLKHTNISDPKDM 380
E + L V+D+D+ HD +G Q+V LL E + D+L+ S+ D+
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDLIG-QVVLDNLLELAEQPPDRPLWRDILEGG--SEKADL 139
Query: 381 KQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAED 440
G++ L Y+P AGLL+V + A +
Sbjct: 140 ---GELNFSLCYLP--------------------------------TAGLLTVTIIKASN 164
Query: 441 VEG---ENHNNPY--AIILYKG---DKKRTKMIRKTRDPAWNEEFQF 479
++ ++PY A ++ +G K++T + + T +P +NE F
Sbjct: 165 LKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 211
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query: 425 LSGAGLLSVLVQGAEDVEGENHN---NPYAIILYKGDKKR---TKMIRKTRDPAWNEEFQ 478
L G+ L V + A D+ ++ N +PY I D+K+ TK+ RKT +P +NE FQ
Sbjct: 17 LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQ 76
Query: 479 FMLDEPPLHE----KIHIEV 494
F + PL E K+H V
Sbjct: 77 FSV---PLAELAQRKLHFSV 93
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEXXXXXXXXXXXXXXXXEWNEN--F 318
G+L V +++AS L D G SDPYVK SL G +NE F
Sbjct: 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 210
Query: 319 KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359
+ + E+ L + V D+D +G ++ +G+ V + PH
Sbjct: 211 DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH 251
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 51/227 (22%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVV--K 323
L V++++A L KD G SDPYVK+ L + +NE F+ V
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHET---KEFTLDLLKHTNISDPKDM 380
E + L V+D+D+ HD +G Q+V LL E + D+L+ S+ D+
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIG-QVVLDNLLELAEQPPDRPLWRDILEGG--SEKADL 138
Query: 381 KQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAED 440
G++ L Y+P AGLL+V + A +
Sbjct: 139 ---GELNFSLCYLP--------------------------------TAGLLTVTIIKASN 163
Query: 441 VEG---ENHNNPY--AIILYKG---DKKRTKMIRKTRDPAWNEEFQF 479
++ ++PY A ++ +G K++T + + T +P +NE F
Sbjct: 164 LKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 210
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query: 425 LSGAGLLSVLVQGAEDVEGENHN---NPYAIILYKGDKKR---TKMIRKTRDPAWNEEFQ 478
L G+ L V + A D+ ++ N +PY I D+K+ TK+ RKT +P +NE FQ
Sbjct: 16 LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQ 75
Query: 479 FMLDEPPLHE----KIHIEV 494
F + PL E K+H V
Sbjct: 76 FSV---PLAELAQRKLHFSV 92
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXX--EWNENFKLVVK 323
LHV V A L+ D G SDPYVKL L + +WNE+F +K
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 324 -EPESQILQLQVFDWDKVGGHDRLG 347
+ + L ++++DWD+ +D G
Sbjct: 80 PSDKDRRLSVEIWDWDRTTRNDFXG 104
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 459 KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEV 494
K++TK IR T +P WNE F F L ++ +E+
Sbjct: 56 KQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEI 91
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEP 325
L V +++A++L D GTSDPYVK+ L + +NE F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 326 E--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLT-PHETKE 363
E + L + V+D+D+ HD +G VP+ + H T+E
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 136
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 415 GNDQSSDEEALSGAGLLSVLVQGAE----DVEGENHNNPYAIILYKGDKKR---TKMIRK 467
G Q S + LL ++Q AE D+ G + +PY + DKK+ TK+ RK
Sbjct: 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTS--DPYVKVFLLPDKKKKFETKVHRK 78
Query: 468 TRDPAWNEEFQF 479
T +P +NE+F F
Sbjct: 79 TLNPVFNEQFTF 90
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEP 325
L V +++A++L D GTSDPYVK+ L + +NE F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 326 E--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLT-PHETKE 363
E + L + V+D+D+ HD +G VP+ + H T+E
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 136
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 415 GNDQSSDEEALSGAGLLSVLVQGAE----DVEGENHNNPYAIILYKGDKKR---TKMIRK 467
G Q S + LL ++Q AE D+ G + +PY + DKK+ TK+ RK
Sbjct: 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTS--DPYVKVFLLPDKKKKFETKVHRK 78
Query: 468 TRDPAWNEEFQF 479
T +P +NE+F F
Sbjct: 79 TLNPVFNEQFTF 90
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEP 325
L V +++A++L D GTSDPYVK+ L + +NE F V
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 326 E--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLT-PHETKE 363
E + L + V+D+D+ HD +G VP+ + H T+E
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 144
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 415 GNDQSSDEEALSGAGLLSVLVQGAE----DVEGENHNNPYAIILYKGDKKR---TKMIRK 467
G Q S + LL ++Q AE D+ G + +PY + DKK+ TK+ RK
Sbjct: 29 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTS--DPYVKVFLLPDKKKKFETKVHRK 86
Query: 468 TRDPAWNEEFQF 479
T +P +NE+F F
Sbjct: 87 TLNPVFNEQFTF 98
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXX--EWNENFKLVV 322
+L V V A L+ D G SDPYVKL L + EWNE F+ +
Sbjct: 173 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQL 232
Query: 323 KEPE-SQILQLQVFDWDKVGGHDRLG 347
KE + + L ++++DWD +D +G
Sbjct: 233 KESDKDRRLSVEIWDWDLTSRNDFMG 258
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 459 KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEV----MSKRTGVIGA 504
K++TK I+ + +P WNE F+F L E ++ +E+ ++ R +G+
Sbjct: 210 KQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGS 259
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXE--WNENFKLVVK 323
+HV V A L+ D G SDPYVKL L + WNE F +K
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 324 EPE-SQILQLQVFDWDKVGGHDRLG 347
+ + L ++V+DWD+ +D +G
Sbjct: 82 PGDVERRLSVEVWDWDRTSRNDFMG 106
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 459 KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEV----MSKRTGVIGAC 505
K++T+ ++ T +P WNE F F L + ++ +EV + R +GA
Sbjct: 58 KQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDRTSRNDFMGAM 108
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXX--EWNENFKLVV 322
+L V V A L+ D G SDPYVKL L + EWNE F+ +
Sbjct: 32 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91
Query: 323 KEPE-SQILQLQVFDWDKVGGHDRLG 347
KE + + L ++++DWD +D +G
Sbjct: 92 KESDKDRRLSVEIWDWDLTSRNDFMG 117
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 459 KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEV----MSKRTGVIGA 504
K++TK I+ + +P WNE F+F L E ++ +E+ ++ R +G+
Sbjct: 69 KQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGS 118
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEP 325
L V +++A++L D GTSDPYVK+ L + +NE F V
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 326 E--SQILQLQVFDWDKVGGHDRLGMQLVPL 353
E + L + V+D+D+ HD +G VP+
Sbjct: 79 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 108
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 415 GNDQSSDEEALSGAGLLSVLVQGAE----DVEGENHNNPYAIILYKGDKKR---TKMIRK 467
G Q S + LL ++Q AE D+ G + +PY + DKK+ TK+ RK
Sbjct: 4 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTS--DPYVKVFLLPDKKKKFETKVHRK 61
Query: 468 TRDPAWNEEFQF 479
T +P +NE+F F
Sbjct: 62 TLNPVFNEQFTF 73
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEXXXXXXXXXXXXXXXXEWNENFKLV 321
G L V ++ A L K D G SDPYVK+ L G+ +NE+F
Sbjct: 17 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 76
Query: 322 VKEPESQILQLQ----VFDWDKVGGHDRLGMQLV 351
V P QI ++Q V D+DK+G +D +G V
Sbjct: 77 V--PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 108
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEXXXXXXXXXXXXXXXXEWNENFKLV 321
G L V ++ A L K D G SDPYVK+ L G+ +NE+F
Sbjct: 18 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 77
Query: 322 VKEPESQILQLQ----VFDWDKVGGHDRLGMQLV 351
V P QI ++Q V D+DK+G +D +G V
Sbjct: 78 V--PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 109
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVV 322
+G L V V+ A++L G S+PY ++S+ + +WN N + +
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNP---KWNFNCQFFI 442
Query: 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPL-KLLTPHETKE-FTLDLLKH 371
K+ +L L +FD D+ D LG +P+ K+ T E+K T LL H
Sbjct: 443 KDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH 493
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 401 KFSSVSKKY---SRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIIL 454
K + S++Y +K + + SG G L V V A +++ +NPY I
Sbjct: 356 KIKAASEQYIDTEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEIS 415
Query: 455 YKGDKKRTKMIRKTRDPAWNEEFQFMLDE 483
T+ I+ T +P WN QF + +
Sbjct: 416 MGSQSYTTRTIQDTLNPKWNFNCQFFIKD 444
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEXXXXXXXXXXXXXXXXEWNENFKL 320
G L V ++ A L K D G SDPYVK+ L G+ +NE+F
Sbjct: 24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83
Query: 321 VVKEPESQILQLQ----VFDWDKVGGHDRLGMQLV 351
V P QI ++Q V D+DK+G +D +G V
Sbjct: 84 EV--PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 116
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEXXXXXXXXXXXXXXXXEWNENFK---L 320
L ++RA L D G +DPYVKL L WNE + +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
++ + + L++ V D DK G ++ +G LK L ++ K F + L
Sbjct: 91 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICL 138
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 456 KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGVIGAC 505
K +K RTK +R TR+P WNE Q+ I E M ++T I C
Sbjct: 64 KSNKLRTKTLRNTRNPVWNETLQY--------HGITEEDMQRKTLRISVC 105
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEXXXXXXXXXXXXXXXXEWNENFK---L 320
L ++RA L D G +DPYVKL L WNE + +
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
++ + + L++ V D DK G ++ +G LK L ++ K F + L
Sbjct: 89 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICL 136
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 456 KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGVIGAC 505
K +K RTK +R TR+P WNE Q+ I E M ++T I C
Sbjct: 62 KSNKLRTKTLRNTRNPVWNETLQY--------HGITEEDMQRKTLRISVC 103
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 431 LSVLVQGAEDV---EGENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLD 482
L V + GA+D+ E NPY I + D K+RTK ++KT +P WN+ F +
Sbjct: 20 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY--- 76
Query: 483 EPPLHEKIHIEVM 495
P+H + E M
Sbjct: 77 -SPVHRREFRERM 88
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 431 LSVLVQGAEDV---EGENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLD 482
L V + GA+D+ E NPY I + D K+RTK ++KT +P WN+ F +
Sbjct: 23 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY--- 79
Query: 483 EPPLHEKIHIEVM 495
P+H + E M
Sbjct: 80 -SPVHRREFRERM 91
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 35.4 bits (80), Expect = 0.068, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 433 VLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQF 479
V QG + + ++PY + KKRTK I +P W E F F
Sbjct: 24 VCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHF 70
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
Query: 250 PILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSL-----------TGEXX 298
PI + I +G L + +++A L+ +D G SDP+VK+ L
Sbjct: 4 PITGEIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAE 63
Query: 299 XXXXXXXXXXXXXXEWNENF---KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPL 353
EWN+ + +++ + L++ V+D+D+ +D LG L+ L
Sbjct: 64 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 268 VKVVRASKLLKK---DFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKE 324
V V+RA+K+ K D L T DPYV+L ++ WNE F+ ++
Sbjct: 22 VVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 81
Query: 325 PESQILQLQVFDWDKV 340
+ +L++ + D + V
Sbjct: 82 NQENVLEITLMDANYV 97
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 459 KKRTKMIRKTRDPAWNEEFQFMLD 482
+KRT+ +P WNE F+F+LD
Sbjct: 57 RKRTRHFNNDINPVWNETFEFILD 80
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 268 VKVVRASKLLKK---DFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKE 324
V V+RA+K+ K D L T DPYV+L ++ WNE F+ ++
Sbjct: 22 VVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 81
Query: 325 PESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKE 363
+ +L++ + D + V + LG + + E KE
Sbjct: 82 NQENVLEITLMDANYVMD-ETLGTATFTVSSMKVGEKKE 119
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 459 KKRTKMIRKTRDPAWNEEFQFMLD 482
+KRT+ +P WNE F+F+LD
Sbjct: 57 RKRTRHFNNDINPVWNETFEFILD 80
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 268 VKVVRASKLLKK---DFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKE 324
V V+RA+K+ K D L T DPYV+L ++ WNE F+ ++
Sbjct: 7 VVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 66
Query: 325 PESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKE 363
+ +L++ + D + V + LG + + E KE
Sbjct: 67 NQENVLEITLMDANYVMD-ETLGTATFTVSSMKVGEKKE 104
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 459 KKRTKMIRKTRDPAWNEEFQFMLD 482
+KRT+ +P WNE F+F+LD
Sbjct: 42 RKRTRHFNNDINPVWNETFEFILD 65
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 39/137 (28%)
Query: 379 DMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGA 438
D+++RGKI+V L Y S ++ G++ + A
Sbjct: 19 DIEERGKILVSLXY---------------------------STQQGGLIVGIIRCVHLAA 51
Query: 439 EDVEGENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEK-IHI 492
D G +++P+ + K D K +T++ +KT +P +NEEF + + L +K + I
Sbjct: 52 XDANG--YSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDI 109
Query: 493 EV----MSKRTGVIGAC 505
V + K IG C
Sbjct: 110 SVWDYDIGKSNDYIGGC 126
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--XXXXXXXXXXXXXXXXEWNENFKLV 321
G L V ++R L D G SDP+VKL L + E+NE F
Sbjct: 37 GGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 322 VKEPE--SQILQLQVFDWDKVGGHDRLG 347
+K + + L + V+D+D +D +G
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIG 124
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 32.0 bits (71), Expect = 0.86, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 14/131 (10%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEP 325
+ + V+ A L KKDF DP+ K+ + G +WN+++ L V +
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS-GQCHSTDTVKNTLDPKWNQHYDLYVGKT 65
Query: 326 ESQILQLQVFDWDKVGGHDRLG------MQLVPLKLLTPHETKEFTLDLLKHTNISDPKD 379
+S + + W+ H + G ++L+ + +T LDL K N SD
Sbjct: 66 DSITISV----WNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCK-LNPSDTDA 120
Query: 380 MKQRGKIVVEL 390
+ RG+IVV L
Sbjct: 121 V--RGQIVVSL 129
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 429 GLLSVLVQGAEDVEGENHN--NPYAIIL-----YKGDKKRTKMIRKTRDPAWNE 475
G L ++V +D+ E+ NPY +K K++TK+ RKTR+P +NE
Sbjct: 20 GTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNE 73
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 16/132 (12%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEP 325
L + V+ A L+KKDF DP+ K+ + G +WN+++ L + +
Sbjct: 5 LRLTVLCAKNLVKKDFFRLPDPFAKVVVDGS-GQCHSTDTVKNTLDPKWNQHYDLYIGKS 63
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVP-LKLLTP-----HETKEFTLDLLKHTNISDPKD 379
+S + + W+ H + G + ++LL+ +T LDL K P D
Sbjct: 64 DSVTISV----WNHKKIHKKQGAGFLGCVRLLSNAINRLKDTGYQRLDLCK----LGPND 115
Query: 380 MKQ-RGKIVVEL 390
RG+IVV L
Sbjct: 116 NDTVRGQIVVSL 127
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 447 NNPY---AIILYKGDKKRTKMIRKTRDPAWNEEFQF 479
++PY I+ K K +T+++RKT DPA++E F F
Sbjct: 44 SDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF 79
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDE 483
G++ + A D G +++P+ + K D K +T++ +KT +P +NEEF + +
Sbjct: 20 GIIRCVHLAAMDANG--YSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH 77
Query: 484 PPLHEK-IHIEV----MSKRTGVIGAC 505
L +K + I V + K IG C
Sbjct: 78 SDLAKKSLDISVWDYDIGKSNDYIGGC 104
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEX--XXXXXXXXXXXXXXXEWNENFKLV 321
G L V ++R L D G SDP+VKL L + E+NE F
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 322 VKEPE--SQILQLQVFDWDKVGGHDRLG 347
+K + + L + V+D+D +D +G
Sbjct: 75 IKHSDLAKKSLDISVWDYDIGKSNDYIG 102
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSL 293
S+ + L V V++A L K D G SDPYVK++L
Sbjct: 22 SLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNL 59
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 39/137 (28%)
Query: 379 DMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGA 438
D+++RGKI+V L Y S ++ G++ + A
Sbjct: 19 DIEERGKILVSLMY---------------------------STQQGGLIVGIIRCVHLAA 51
Query: 439 EDVEGENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEK-IHI 492
D G +++P+ + K D K +T++ +KT +P +NEEF + + L +K + I
Sbjct: 52 MDANG--YSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDI 109
Query: 493 EV----MSKRTGVIGAC 505
V + K IG C
Sbjct: 110 SVWDYDIGKSNDYIGGC 126
>pdb|3NR9|A Chain A, Structure Of Human Cdc2-Like Kinase 2 (Clk2)
pdb|3NR9|B Chain B, Structure Of Human Cdc2-Like Kinase 2 (Clk2)
pdb|3NR9|C Chain C, Structure Of Human Cdc2-Like Kinase 2 (Clk2)
Length = 368
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 319 KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN 373
K+ K+P+++ L +Q+FDW GH + +L+ L T D LK N
Sbjct: 86 KINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLS----------TFDFLKDNN 130
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 446 HNNPYAIILYKGDKKRTKMI---RKTRDPAWNEEFQF 479
H+NPY I D+K +K RKT+ P + E + F
Sbjct: 53 HSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTF 89
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 268 VKVVRASKLLKKDFLGTSDPYVKLSL 293
V +++A L D GTSDPYVK+ L
Sbjct: 20 VNIIKARNLKAMDIGGTSDPYVKVWL 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,256,739
Number of Sequences: 62578
Number of extensions: 587066
Number of successful extensions: 1279
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 89
length of query: 507
length of database: 14,973,337
effective HSP length: 103
effective length of query: 404
effective length of database: 8,527,803
effective search space: 3445232412
effective search space used: 3445232412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)