Query 010550
Match_columns 507
No_of_seqs 405 out of 2578
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 01:50:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 1.4E-62 3E-67 522.1 34.9 457 2-504 165-657 (1227)
2 KOG1028 Ca2+-dependent phospho 100.0 3.8E-30 8.2E-35 263.1 23.4 213 258-506 161-388 (421)
3 cd04016 C2_Tollip C2 domain pr 99.9 2.4E-21 5.1E-26 164.3 14.3 119 263-392 1-121 (121)
4 KOG2059 Ras GTPase-activating 99.8 7.7E-21 1.7E-25 194.2 13.7 204 264-506 5-233 (800)
5 cd04042 C2A_MCTP_PRT C2 domain 99.8 4.9E-20 1.1E-24 157.7 15.0 121 265-394 1-121 (121)
6 cd08682 C2_Rab11-FIP_classI C2 99.8 3.2E-20 7E-25 160.0 13.4 119 266-391 1-126 (126)
7 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.1E-19 2.4E-24 154.4 15.0 115 265-393 1-115 (116)
8 cd08681 C2_fungal_Inn1p-like C 99.8 5.1E-20 1.1E-24 156.9 12.6 117 264-392 1-118 (118)
9 cd08375 C2_Intersectin C2 doma 99.8 1.2E-19 2.6E-24 158.0 15.0 122 258-392 9-135 (136)
10 cd08395 C2C_Munc13 C2 domain t 99.8 1.5E-19 3.1E-24 153.0 13.9 108 265-373 1-115 (120)
11 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.4E-19 3E-24 154.5 13.6 116 265-388 1-125 (126)
12 cd04036 C2_cPLA2 C2 domain pre 99.8 2.3E-19 5E-24 153.1 14.7 116 266-392 2-117 (119)
13 cd08677 C2A_Synaptotagmin-13 C 99.8 8.3E-20 1.8E-24 152.4 11.0 106 259-367 9-117 (118)
14 cd04019 C2C_MCTP_PRT_plant C2 99.8 4.4E-19 9.6E-24 156.8 14.1 128 265-395 1-134 (150)
15 cd04028 C2B_RIM1alpha C2 domai 99.8 5.3E-19 1.1E-23 154.5 13.9 112 262-374 27-142 (146)
16 KOG1030 Predicted Ca2+-depende 99.8 1.9E-19 4.2E-24 155.7 10.7 100 261-364 3-102 (168)
17 cd04022 C2A_MCTP_PRT_plant C2 99.8 5.4E-19 1.2E-23 152.6 13.4 121 265-393 1-126 (127)
18 cd04044 C2A_Tricalbin-like C2 99.8 8.6E-19 1.9E-23 150.7 13.8 122 263-394 1-124 (124)
19 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 9.7E-19 2.1E-23 150.2 14.0 122 265-390 1-122 (123)
20 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.1E-18 2.5E-23 148.9 14.3 119 266-392 2-121 (121)
21 cd08381 C2B_PI3K_class_II C2 d 99.8 4.5E-19 9.8E-24 151.6 11.5 105 263-368 12-121 (122)
22 cd04024 C2A_Synaptotagmin-like 99.8 8.6E-19 1.9E-23 151.6 13.4 123 264-392 1-128 (128)
23 cd08678 C2_C21orf25-like C2 do 99.8 2E-18 4.4E-23 148.7 15.3 123 266-396 1-123 (126)
24 cd08400 C2_Ras_p21A1 C2 domain 99.8 2.6E-18 5.7E-23 147.8 15.6 122 263-394 3-124 (126)
25 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.9E-18 4.1E-23 147.9 13.2 115 264-392 1-121 (121)
26 cd04046 C2_Calpain C2 domain p 99.8 4.8E-18 1E-22 146.3 15.6 123 262-394 1-123 (126)
27 cd04015 C2_plant_PLD C2 domain 99.8 5.2E-18 1.1E-22 151.5 15.8 123 263-393 6-158 (158)
28 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.4E-18 3.1E-23 149.3 11.7 110 259-368 10-124 (125)
29 cd04029 C2A_SLP-4_5 C2 domain 99.8 2.8E-18 6.2E-23 147.3 12.2 110 259-368 10-124 (125)
30 cd08378 C2B_MCTP_PRT_plant C2 99.8 5.8E-18 1.2E-22 144.5 13.5 114 265-392 1-119 (121)
31 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 7.4E-18 1.6E-22 146.8 14.3 123 265-393 1-133 (133)
32 cd08387 C2A_Synaptotagmin-8 C2 99.8 3.8E-18 8.2E-23 146.7 11.8 110 259-368 11-122 (124)
33 cd08377 C2C_MCTP_PRT C2 domain 99.8 1.1E-17 2.4E-22 142.7 14.2 118 264-392 1-118 (119)
34 cd04041 C2A_fungal C2 domain f 99.8 3.1E-18 6.7E-23 144.1 10.3 95 264-358 1-99 (111)
35 cd04010 C2B_RasA3 C2 domain se 99.8 9E-18 1.9E-22 147.7 13.2 123 266-390 2-147 (148)
36 cd04014 C2_PKC_epsilon C2 doma 99.8 2E-17 4.3E-22 143.8 14.8 116 263-394 3-130 (132)
37 cd08385 C2A_Synaptotagmin-1-5- 99.8 8.8E-18 1.9E-22 144.4 12.3 110 259-368 11-122 (124)
38 cd08677 C2A_Synaptotagmin-13 C 99.8 8.2E-18 1.8E-22 140.4 11.4 79 428-506 13-100 (118)
39 cd08680 C2_Kibra C2 domain fou 99.8 6.3E-18 1.4E-22 144.3 10.9 109 259-367 9-123 (124)
40 cd08388 C2A_Synaptotagmin-4-11 99.8 1.2E-17 2.7E-22 144.0 12.7 110 259-368 11-126 (128)
41 cd04043 C2_Munc13_fungal C2 do 99.7 3E-17 6.6E-22 141.5 14.7 118 265-394 2-122 (126)
42 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.8E-17 6.1E-22 140.5 14.0 118 266-391 2-120 (121)
43 cd08392 C2A_SLP-3 C2 domain fi 99.7 1.7E-17 3.6E-22 142.9 12.0 110 259-368 10-127 (128)
44 cd04017 C2D_Ferlin C2 domain f 99.7 5E-17 1.1E-21 141.7 15.0 120 265-395 2-134 (135)
45 COG5038 Ca2+-dependent lipid-b 99.7 4.2E-16 9.1E-21 168.3 24.6 281 222-506 655-1124(1227)
46 cd04032 C2_Perforin C2 domain 99.7 2.5E-17 5.4E-22 140.8 12.2 107 248-358 12-119 (127)
47 cd08373 C2A_Ferlin C2 domain f 99.7 6.5E-17 1.4E-21 139.6 14.9 118 270-398 2-121 (127)
48 cd04039 C2_PSD C2 domain prese 99.7 1.7E-17 3.7E-22 138.4 10.7 94 264-360 1-99 (108)
49 cd08382 C2_Smurf-like C2 domai 99.7 6E-17 1.3E-21 138.8 13.7 118 266-390 2-122 (123)
50 cd08386 C2A_Synaptotagmin-7 C2 99.7 5.1E-17 1.1E-21 139.9 13.1 111 259-369 11-124 (125)
51 cd08389 C2A_Synaptotagmin-14_1 99.7 3.7E-17 8E-22 140.2 12.1 109 259-368 11-122 (124)
52 cd08685 C2_RGS-like C2 domain 99.7 2.1E-17 4.6E-22 140.5 9.8 105 262-367 10-118 (119)
53 cd04050 C2B_Synaptotagmin-like 99.7 5E-17 1.1E-21 135.3 11.4 99 265-369 1-101 (105)
54 cd04030 C2C_KIAA1228 C2 domain 99.7 7.1E-17 1.5E-21 139.4 12.3 110 259-368 11-126 (127)
55 cd08521 C2A_SLP C2 domain firs 99.7 4.8E-17 1E-21 139.6 11.1 110 259-368 9-123 (123)
56 cd04031 C2A_RIM1alpha C2 domai 99.7 9.7E-17 2.1E-21 138.1 11.9 109 259-368 11-124 (125)
57 cd08390 C2A_Synaptotagmin-15-1 99.7 1.6E-16 3.6E-21 136.3 12.8 110 259-368 9-121 (123)
58 cd04027 C2B_Munc13 C2 domain s 99.7 2.7E-16 5.8E-21 135.6 14.0 115 265-390 2-127 (127)
59 cd08690 C2_Freud-1 C2 domain f 99.7 4.5E-16 9.8E-21 137.0 15.4 124 264-394 4-138 (155)
60 cd04040 C2D_Tricalbin-like C2 99.7 2.7E-16 5.8E-21 133.3 13.5 113 266-387 1-113 (115)
61 cd08676 C2A_Munc13-like C2 dom 99.7 1.6E-16 3.5E-21 140.1 11.9 106 258-368 22-153 (153)
62 cd04051 C2_SRC2_like C2 domain 99.7 1.3E-16 2.9E-21 137.3 10.9 115 265-388 1-125 (125)
63 cd08688 C2_KIAA0528-like C2 do 99.7 1.2E-16 2.5E-21 134.3 10.3 101 266-369 1-108 (110)
64 cd08406 C2B_Synaptotagmin-12 C 99.7 9.5E-17 2.1E-21 139.4 9.6 108 259-368 10-121 (136)
65 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.7E-16 3.8E-21 142.2 11.3 109 260-368 23-136 (162)
66 cd08394 C2A_Munc13 C2 domain f 99.7 2.5E-16 5.4E-21 132.8 11.5 101 263-372 1-103 (127)
67 cd04049 C2_putative_Elicitor-r 99.7 2E-16 4.3E-21 136.0 11.0 103 264-369 1-107 (124)
68 cd08407 C2B_Synaptotagmin-13 C 99.7 1.1E-16 2.5E-21 138.8 9.0 108 259-368 10-123 (138)
69 cd08407 C2B_Synaptotagmin-13 C 99.7 2.4E-16 5.2E-21 136.8 10.7 92 383-506 1-107 (138)
70 PLN03008 Phospholipase D delta 99.7 4.3E-16 9.4E-21 165.9 14.9 130 262-399 12-183 (868)
71 cd04037 C2E_Ferlin C2 domain f 99.7 2.3E-16 5.1E-21 135.3 10.3 93 265-358 1-93 (124)
72 cd08691 C2_NEDL1-like C2 domai 99.7 1.5E-15 3.3E-20 131.7 15.4 118 265-390 2-136 (137)
73 cd04038 C2_ArfGAP C2 domain pr 99.7 3.7E-16 8.1E-21 137.0 11.6 93 263-360 1-93 (145)
74 cd04045 C2C_Tricalbin-like C2 99.7 4.2E-16 9.2E-21 132.8 11.2 103 264-370 1-103 (120)
75 cd08406 C2B_Synaptotagmin-12 C 99.7 3.8E-16 8.3E-21 135.6 10.0 91 384-506 2-105 (136)
76 cd04018 C2C_Ferlin C2 domain t 99.7 7.6E-16 1.6E-20 135.7 12.0 93 265-360 1-108 (151)
77 cd04009 C2B_Munc13-like C2 dom 99.7 6.3E-16 1.4E-20 134.4 11.4 100 260-359 12-119 (133)
78 cd04029 C2A_SLP-4_5 C2 domain 99.7 7.8E-16 1.7E-20 132.2 11.6 92 383-506 1-106 (125)
79 cd08384 C2B_Rabphilin_Doc2 C2 99.6 5.1E-16 1.1E-20 135.1 9.4 109 259-369 8-120 (133)
80 cd08392 C2A_SLP-3 C2 domain fi 99.6 1.1E-15 2.4E-20 131.5 11.1 92 383-506 1-106 (128)
81 KOG1013 Synaptic vesicle prote 99.6 1.4E-16 3E-21 150.5 5.6 214 260-505 89-322 (362)
82 cd04052 C2B_Tricalbin-like C2 99.6 1.3E-15 2.8E-20 128.1 10.8 102 281-395 9-111 (111)
83 cd08393 C2A_SLP-1_2 C2 domain 99.6 1.1E-15 2.3E-20 131.4 10.5 92 383-506 1-106 (125)
84 cd08675 C2B_RasGAP C2 domain s 99.6 1.9E-15 4E-20 131.9 12.0 107 266-373 1-123 (137)
85 cd08405 C2B_Synaptotagmin-7 C2 99.6 7.1E-16 1.5E-20 134.7 9.4 98 259-356 10-111 (136)
86 cd04011 C2B_Ferlin C2 domain s 99.6 2E-15 4.4E-20 127.0 11.6 98 264-368 4-108 (111)
87 cd04021 C2_E3_ubiquitin_ligase 99.6 4.7E-15 1E-19 127.4 14.0 118 264-390 2-124 (125)
88 cd08408 C2B_Synaptotagmin-14_1 99.6 1.4E-15 3E-20 132.7 10.7 100 258-357 9-113 (138)
89 cd04048 C2A_Copine C2 domain f 99.6 1.5E-15 3.2E-20 129.7 10.6 99 270-368 6-112 (120)
90 cd08404 C2B_Synaptotagmin-4 C2 99.6 5E-16 1.1E-20 135.7 7.6 107 260-368 11-121 (136)
91 cd04013 C2_SynGAP_like C2 doma 99.6 6.4E-15 1.4E-19 128.4 14.4 127 262-396 9-142 (146)
92 cd08692 C2B_Tac2-N C2 domain s 99.6 2E-15 4.2E-20 129.3 10.9 80 427-506 12-104 (135)
93 cd04035 C2A_Rabphilin_Doc2 C2 99.6 2.8E-15 6E-20 128.7 12.0 108 259-367 10-122 (123)
94 cd04039 C2_PSD C2 domain prese 99.6 2.6E-15 5.7E-20 125.2 11.4 78 429-506 1-89 (108)
95 cd08402 C2B_Synaptotagmin-1 C2 99.6 8.6E-16 1.9E-20 134.2 8.8 98 259-356 10-111 (136)
96 KOG1030 Predicted Ca2+-depende 99.6 1.4E-15 3E-20 131.9 9.7 78 427-506 4-88 (168)
97 cd08692 C2B_Tac2-N C2 domain s 99.6 2.1E-15 4.5E-20 129.1 10.7 108 259-367 9-120 (135)
98 cd08381 C2B_PI3K_class_II C2 d 99.6 2.8E-15 6E-20 128.2 11.1 77 430-506 14-103 (122)
99 cd08403 C2B_Synaptotagmin-3-5- 99.6 1.5E-15 3.3E-20 132.3 9.6 108 259-368 9-120 (134)
100 cd04028 C2B_RIM1alpha C2 domai 99.6 5E-15 1.1E-19 129.5 12.7 91 380-506 14-118 (146)
101 cd08410 C2B_Synaptotagmin-17 C 99.6 2.5E-15 5.5E-20 130.9 10.7 99 259-357 9-111 (135)
102 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 6.7E-15 1.5E-19 132.0 11.7 104 383-506 1-118 (162)
103 cd08409 C2B_Synaptotagmin-15 C 99.6 1.3E-15 2.8E-20 133.0 6.7 110 259-369 10-123 (137)
104 cd08409 C2B_Synaptotagmin-15 C 99.6 5.4E-15 1.2E-19 129.1 10.7 92 383-506 1-104 (137)
105 cd08686 C2_ABR C2 domain in th 99.6 1.7E-14 3.8E-19 120.0 12.8 95 266-367 1-106 (118)
106 cd08680 C2_Kibra C2 domain fou 99.6 7.5E-15 1.6E-19 125.3 10.9 80 427-506 12-105 (124)
107 cd04016 C2_Tollip C2 domain pr 99.6 1.1E-14 2.4E-19 123.5 11.4 76 429-506 2-84 (121)
108 cd08383 C2A_RasGAP C2 domain ( 99.6 3.4E-14 7.3E-19 120.7 14.0 114 266-392 2-117 (117)
109 cd08410 C2B_Synaptotagmin-17 C 99.6 7.9E-15 1.7E-19 127.8 10.2 91 384-506 1-104 (135)
110 cd08388 C2A_Synaptotagmin-4-11 99.6 1.4E-14 3.1E-19 124.8 11.5 92 383-506 2-106 (128)
111 cd04026 C2_PKC_alpha_gamma C2 99.6 1.2E-14 2.7E-19 126.0 11.0 105 264-369 13-120 (131)
112 cd00275 C2_PLC_like C2 domain 99.6 4.9E-14 1.1E-18 121.7 14.6 119 265-392 3-127 (128)
113 cd08387 C2A_Synaptotagmin-8 C2 99.6 1.5E-14 3.3E-19 124.3 11.2 92 383-506 2-104 (124)
114 cd04047 C2B_Copine C2 domain s 99.6 1.5E-14 3.3E-19 121.4 11.0 96 269-365 5-107 (110)
115 cd08685 C2_RGS-like C2 domain 99.6 1.4E-14 3.1E-19 123.1 10.8 78 429-506 12-101 (119)
116 cd08394 C2A_Munc13 C2 domain f 99.6 2.1E-14 4.5E-19 121.1 11.3 75 429-506 2-79 (127)
117 cd08379 C2D_MCTP_PRT_plant C2 99.6 1.3E-14 2.9E-19 123.8 10.1 75 430-506 1-91 (126)
118 cd00276 C2B_Synaptotagmin C2 d 99.6 3.8E-15 8.3E-20 129.7 6.9 108 260-369 10-121 (134)
119 KOG0696 Serine/threonine prote 99.6 1.2E-15 2.6E-20 148.5 4.0 108 261-369 177-287 (683)
120 cd04031 C2A_RIM1alpha C2 domai 99.6 2.4E-14 5.3E-19 123.1 11.4 92 383-506 2-107 (125)
121 cd04050 C2B_Synaptotagmin-like 99.6 2.4E-14 5.2E-19 119.1 10.5 76 430-506 1-80 (105)
122 cd08385 C2A_Synaptotagmin-1-5- 99.6 2.9E-14 6.2E-19 122.5 11.0 92 383-506 2-104 (124)
123 cd04032 C2_Perforin C2 domain 99.6 2.5E-14 5.3E-19 122.4 10.2 80 427-506 26-111 (127)
124 cd08408 C2B_Synaptotagmin-14_1 99.5 2.3E-14 5.1E-19 125.0 10.2 79 428-506 14-106 (138)
125 cd04030 C2C_KIAA1228 C2 domain 99.5 4.1E-14 8.8E-19 122.1 11.5 93 382-506 1-108 (127)
126 cd08404 C2B_Synaptotagmin-4 C2 99.5 3.4E-14 7.3E-19 124.1 11.0 92 383-506 1-105 (136)
127 cd08395 C2C_Munc13 C2 domain t 99.5 4.8E-14 1E-18 119.4 10.8 76 431-506 2-92 (120)
128 cd08682 C2_Rab11-FIP_classI C2 99.5 3.7E-14 8.1E-19 122.1 10.3 76 431-506 1-87 (126)
129 cd08402 C2B_Synaptotagmin-1 C2 99.5 4.1E-14 8.8E-19 123.6 10.6 92 383-506 1-105 (136)
130 cd08405 C2B_Synaptotagmin-7 C2 99.5 5.4E-14 1.2E-18 122.8 10.6 92 383-506 1-105 (136)
131 cd08403 C2B_Synaptotagmin-3-5- 99.5 6.6E-14 1.4E-18 121.9 10.7 91 384-506 1-104 (134)
132 cd08375 C2_Intersectin C2 doma 99.5 1.1E-13 2.3E-18 120.6 11.8 79 427-506 13-98 (136)
133 cd04009 C2B_Munc13-like C2 dom 99.5 1E-13 2.2E-18 120.6 11.6 92 383-506 2-110 (133)
134 cd04018 C2C_Ferlin C2 domain t 99.5 9E-14 1.9E-18 122.5 11.0 76 431-506 2-98 (151)
135 PF00168 C2: C2 domain; Inter 99.5 9.6E-14 2.1E-18 110.3 9.6 85 266-350 1-85 (85)
136 cd08521 C2A_SLP C2 domain firs 99.5 1.3E-13 2.8E-18 118.2 11.1 79 428-506 13-105 (123)
137 cd08386 C2A_Synaptotagmin-7 C2 99.5 2.3E-13 5E-18 117.0 12.3 92 383-506 2-105 (125)
138 cd08389 C2A_Synaptotagmin-14_1 99.5 1.3E-13 2.9E-18 118.1 10.6 91 383-506 2-104 (124)
139 cd08681 C2_fungal_Inn1p-like C 99.5 1.1E-13 2.4E-18 117.8 10.0 77 429-506 1-84 (118)
140 cd08376 C2B_MCTP_PRT C2 domain 99.5 1.4E-13 3.1E-18 116.7 10.6 76 430-506 1-83 (116)
141 cd04038 C2_ArfGAP C2 domain pr 99.5 1.9E-13 4.1E-18 119.9 11.7 76 429-506 2-83 (145)
142 cd08378 C2B_MCTP_PRT_plant C2 99.5 8.9E-14 1.9E-18 118.7 9.3 74 431-506 2-78 (121)
143 PLN03200 cellulose synthase-in 99.5 7.7E-14 1.7E-18 162.0 11.4 122 260-394 1976-2101(2102)
144 cd08384 C2B_Rabphilin_Doc2 C2 99.5 1.5E-13 3.3E-18 119.5 10.4 79 428-506 12-103 (133)
145 cd08390 C2A_Synaptotagmin-15-1 99.5 2.6E-13 5.7E-18 116.3 11.1 91 384-506 1-103 (123)
146 cd04046 C2_Calpain C2 domain p 99.5 2.8E-13 6E-18 116.6 10.9 77 428-506 2-84 (126)
147 cd04041 C2A_fungal C2 domain f 99.5 2.9E-13 6.3E-18 113.8 10.3 78 429-506 1-91 (111)
148 cd04011 C2B_Ferlin C2 domain s 99.5 2.7E-13 5.8E-18 114.0 9.9 77 429-506 4-87 (111)
149 cd08688 C2_KIAA0528-like C2 do 99.5 2.8E-13 6.2E-18 113.6 9.8 76 431-506 1-86 (110)
150 cd08391 C2A_C2C_Synaptotagmin_ 99.5 4.5E-13 9.8E-18 114.4 10.6 77 429-506 1-89 (121)
151 cd04024 C2A_Synaptotagmin-like 99.5 5.1E-13 1.1E-17 115.3 10.9 77 429-506 1-86 (128)
152 cd04019 C2C_MCTP_PRT_plant C2 99.4 5.8E-13 1.3E-17 117.8 10.9 76 430-506 1-84 (150)
153 cd04042 C2A_MCTP_PRT C2 domain 99.4 6.7E-13 1.4E-17 113.5 11.0 74 431-506 2-83 (121)
154 KOG1011 Neurotransmitter relea 99.4 1.8E-13 3.9E-18 138.7 8.5 128 260-398 291-429 (1283)
155 cd04025 C2B_RasA1_RasA4 C2 dom 99.4 7.7E-13 1.7E-17 113.4 11.2 75 431-506 2-83 (123)
156 cd04010 C2B_RasA3 C2 domain se 99.4 4E-13 8.7E-18 118.2 9.1 76 431-506 2-101 (148)
157 cd04022 C2A_MCTP_PRT_plant C2 99.4 5.3E-13 1.1E-17 115.1 9.8 76 431-506 2-87 (127)
158 cd00276 C2B_Synaptotagmin C2 d 99.4 7.5E-13 1.6E-17 115.2 10.6 91 384-506 1-104 (134)
159 cd08686 C2_ABR C2 domain in th 99.4 8.5E-13 1.8E-17 109.9 9.9 71 431-506 1-87 (118)
160 cd08377 C2C_MCTP_PRT C2 domain 99.4 1.3E-12 2.9E-17 111.2 11.1 76 429-506 1-83 (119)
161 cd08400 C2_Ras_p21A1 C2 domain 99.4 1.9E-12 4.2E-17 111.3 11.5 76 429-506 4-84 (126)
162 cd08678 C2_C21orf25-like C2 do 99.4 1.4E-12 3.1E-17 112.2 10.7 74 431-506 1-81 (126)
163 cd08401 C2A_RasA2_RasA3 C2 dom 99.4 1.9E-12 4.1E-17 110.5 11.0 74 431-506 2-84 (121)
164 cd04036 C2_cPLA2 C2 domain pre 99.4 1.1E-12 2.5E-17 111.7 9.6 75 431-506 2-85 (119)
165 cd04026 C2_PKC_alpha_gamma C2 99.4 2.9E-12 6.2E-17 111.2 11.8 78 429-506 13-102 (131)
166 cd04017 C2D_Ferlin C2 domain f 99.4 2.5E-12 5.3E-17 112.1 11.1 77 430-506 2-93 (135)
167 cd04045 C2C_Tricalbin-like C2 99.4 2.8E-12 6.1E-17 109.2 11.2 76 429-506 1-84 (120)
168 cd08676 C2A_Munc13-like C2 dom 99.4 3E-12 6.5E-17 113.0 11.0 80 426-506 25-136 (153)
169 cd04027 C2B_Munc13 C2 domain s 99.4 3.2E-12 6.9E-17 110.2 10.7 76 429-506 1-94 (127)
170 cd08382 C2_Smurf-like C2 domai 99.4 3E-12 6.5E-17 109.7 10.4 73 431-506 2-84 (123)
171 cd04037 C2E_Ferlin C2 domain f 99.4 3.2E-12 7E-17 109.6 10.6 76 430-506 1-85 (124)
172 cd04054 C2A_Rasal1_RasA4 C2 do 99.4 4.5E-12 9.8E-17 108.2 11.2 74 431-506 2-83 (121)
173 cd04044 C2A_Tricalbin-like C2 99.4 3.8E-12 8.2E-17 109.2 10.7 76 429-506 2-87 (124)
174 cd04015 C2_plant_PLD C2 domain 99.4 4.1E-12 9E-17 113.5 11.3 77 428-506 6-119 (158)
175 cd04035 C2A_Rabphilin_Doc2 C2 99.4 7.2E-12 1.6E-16 107.4 12.2 92 383-506 1-105 (123)
176 cd04014 C2_PKC_epsilon C2 doma 99.4 6.3E-12 1.4E-16 109.1 11.4 77 427-506 2-96 (132)
177 cd04049 C2_putative_Elicitor-r 99.3 7.2E-12 1.6E-16 107.5 11.1 78 429-506 1-88 (124)
178 cd08374 C2F_Ferlin C2 domain s 99.3 8.9E-12 1.9E-16 106.7 11.4 94 266-359 2-124 (133)
179 cd04033 C2_NEDD4_NEDD4L C2 dom 99.3 7.1E-12 1.5E-16 109.0 10.5 75 430-506 1-89 (133)
180 PF00168 C2: C2 domain; Inter 99.3 3.6E-12 7.8E-17 101.1 7.1 75 431-506 1-85 (85)
181 cd08373 C2A_Ferlin C2 domain f 99.3 1E-11 2.2E-16 107.1 10.1 72 435-506 2-79 (127)
182 smart00239 C2 Protein kinase C 99.3 2E-11 4.3E-16 99.7 10.7 95 266-360 2-96 (101)
183 cd04043 C2_Munc13_fungal C2 do 99.3 1.9E-11 4.2E-16 105.2 11.1 76 430-506 2-87 (126)
184 KOG0696 Serine/threonine prote 99.3 4.5E-12 9.7E-17 123.9 7.7 77 430-506 181-269 (683)
185 cd08675 C2B_RasGAP C2 domain s 99.3 1.3E-11 2.8E-16 107.6 9.3 76 431-506 1-100 (137)
186 cd04051 C2_SRC2_like C2 domain 99.3 1.6E-11 3.4E-16 105.6 8.9 76 431-506 2-89 (125)
187 PLN03200 cellulose synthase-in 99.3 8.9E-12 1.9E-16 145.2 8.7 80 427-506 1978-2062(2102)
188 cd04021 C2_E3_ubiquitin_ligase 99.3 5.3E-11 1.1E-15 102.2 11.2 74 430-506 3-83 (125)
189 cd08691 C2_NEDL1-like C2 domai 99.3 5E-11 1.1E-15 103.5 10.9 74 430-506 2-98 (137)
190 cd00030 C2 C2 domain. The C2 d 99.2 5.6E-11 1.2E-15 96.7 10.7 99 266-366 1-100 (102)
191 cd08383 C2A_RasGAP C2 domain ( 99.2 5.1E-11 1.1E-15 101.1 10.2 75 431-506 2-82 (117)
192 cd04040 C2D_Tricalbin-like C2 99.2 5.5E-11 1.2E-15 100.6 10.0 75 431-506 1-83 (115)
193 cd08690 C2_Freud-1 C2 domain f 99.2 6.2E-11 1.3E-15 104.5 10.5 76 431-506 4-101 (155)
194 KOG1028 Ca2+-dependent phospho 99.2 5.8E-11 1.3E-15 122.2 10.0 97 259-355 293-393 (421)
195 PLN02270 phospholipase D alpha 99.2 2.3E-10 5E-15 122.6 13.9 130 262-399 6-154 (808)
196 PF10296 DUF2404: Putative int 99.1 3E-10 6.6E-15 91.3 9.9 85 78-163 1-89 (91)
197 PLN02223 phosphoinositide phos 99.1 2.7E-10 5.9E-15 117.5 11.8 98 263-360 408-512 (537)
198 cd04047 C2B_Copine C2 domain s 99.1 2.8E-10 6.1E-15 95.4 9.2 72 434-506 5-92 (110)
199 cd00275 C2_PLC_like C2 domain 99.1 4.6E-10 9.9E-15 96.8 10.7 76 430-506 3-93 (128)
200 cd04048 C2A_Copine C2 domain f 99.1 2.8E-10 6.1E-15 97.0 8.9 71 435-506 6-94 (120)
201 cd04013 C2_SynGAP_like C2 doma 99.1 8.1E-10 1.8E-14 96.5 10.4 73 430-506 12-93 (146)
202 cd04052 C2B_Tricalbin-like C2 99.1 6.6E-10 1.4E-14 93.3 9.0 61 445-506 11-75 (111)
203 PLN02952 phosphoinositide phos 99.1 2E-09 4.3E-14 113.5 14.2 104 263-369 469-580 (599)
204 KOG1328 Synaptic vesicle prote 99.0 8.8E-11 1.9E-15 121.1 2.6 133 259-397 109-305 (1103)
205 PLN03008 Phospholipase D delta 99.0 1.9E-09 4E-14 115.8 10.0 60 445-506 75-138 (868)
206 PLN02230 phosphoinositide phos 98.9 3.4E-09 7.3E-14 111.6 10.4 98 263-360 468-573 (598)
207 smart00239 C2 Protein kinase C 98.9 1.2E-08 2.5E-13 83.1 10.7 75 431-506 2-86 (101)
208 PLN02228 Phosphoinositide phos 98.9 2.5E-08 5.3E-13 104.7 14.8 123 264-394 431-562 (567)
209 cd08374 C2F_Ferlin C2 domain s 98.9 8.6E-09 1.9E-13 88.4 9.0 76 431-506 2-115 (133)
210 PLN02222 phosphoinositide phos 98.9 9.9E-09 2.1E-13 107.9 11.2 98 263-360 451-556 (581)
211 KOG0169 Phosphoinositide-speci 98.9 1.3E-08 2.9E-13 107.1 11.8 96 265-360 617-719 (746)
212 cd08689 C2_fungal_Pkc1p C2 dom 98.9 6.6E-09 1.4E-13 83.6 7.3 86 266-359 1-89 (109)
213 KOG1011 Neurotransmitter relea 98.8 3.5E-09 7.6E-14 108.1 5.7 80 424-505 290-387 (1283)
214 cd00030 C2 C2 domain. The C2 d 98.8 3.8E-08 8.2E-13 79.7 10.1 75 431-506 1-83 (102)
215 KOG1328 Synaptic vesicle prote 98.8 2.8E-09 6E-14 110.3 3.8 100 259-358 942-1049(1103)
216 cd08689 C2_fungal_Pkc1p C2 dom 98.7 7.9E-08 1.7E-12 77.5 8.7 61 431-497 1-68 (109)
217 KOG1327 Copine [Signal transdu 98.7 1.7E-07 3.7E-12 96.1 13.4 166 301-506 43-228 (529)
218 KOG1264 Phospholipase C [Lipid 98.7 5.2E-08 1.1E-12 102.2 9.7 127 264-399 1065-1195(1267)
219 KOG2059 Ras GTPase-activating 98.7 3.4E-08 7.3E-13 102.6 7.2 124 270-394 137-277 (800)
220 PLN02352 phospholipase D epsil 98.7 2.1E-07 4.6E-12 100.0 12.6 123 261-398 7-135 (758)
221 PLN02223 phosphoinositide phos 98.6 3.1E-07 6.7E-12 95.2 11.0 79 427-506 407-502 (537)
222 KOG1031 Predicted Ca2+-depende 98.5 3.4E-07 7.3E-12 92.9 9.3 119 264-392 3-135 (1169)
223 KOG1326 Membrane-associated pr 98.4 1.7E-07 3.7E-12 100.8 4.1 225 263-507 205-453 (1105)
224 KOG1326 Membrane-associated pr 98.4 2.1E-07 4.6E-12 100.1 3.2 91 265-356 614-704 (1105)
225 PLN02230 phosphoinositide phos 98.3 2E-06 4.3E-11 91.0 10.1 78 428-506 468-563 (598)
226 PLN02952 phosphoinositide phos 98.3 2.7E-06 5.9E-11 90.1 11.0 78 428-506 469-564 (599)
227 PLN02222 phosphoinositide phos 98.3 3E-06 6.5E-11 89.5 11.1 78 428-506 451-546 (581)
228 KOG0905 Phosphoinositide 3-kin 98.3 4.1E-07 9E-12 99.0 4.4 107 262-368 1522-1633(1639)
229 KOG0905 Phosphoinositide 3-kin 98.2 1.9E-06 4.1E-11 94.1 6.3 79 428-506 1523-1615(1639)
230 KOG1013 Synaptic vesicle prote 98.2 1.9E-06 4.2E-11 82.5 5.3 98 258-355 227-328 (362)
231 PLN02270 phospholipase D alpha 98.1 8.7E-06 1.9E-10 88.1 9.7 77 428-506 7-109 (808)
232 PLN02228 Phosphoinositide phos 98.1 1.8E-05 3.9E-10 83.5 10.4 78 428-506 430-526 (567)
233 KOG0169 Phosphoinositide-speci 98.0 1.6E-05 3.5E-10 84.4 9.1 76 430-506 617-709 (746)
234 KOG1031 Predicted Ca2+-depende 98.0 7.7E-06 1.7E-10 83.2 5.4 79 428-506 2-90 (1169)
235 cd08684 C2A_Tac2-N C2 domain f 98.0 5.8E-06 1.3E-10 63.8 3.4 91 267-359 2-95 (103)
236 KOG1264 Phospholipase C [Lipid 97.9 5.7E-05 1.2E-09 80.0 9.8 77 429-506 1065-1154(1267)
237 KOG3532 Predicted protein kina 97.7 0.00014 2.9E-09 75.8 9.5 226 61-295 81-358 (1051)
238 PLN02964 phosphatidylserine de 97.7 4.1E-05 8.8E-10 82.2 5.6 93 259-360 49-141 (644)
239 KOG1327 Copine [Signal transdu 97.6 9.1E-05 2E-09 76.5 6.3 88 270-358 142-236 (529)
240 cd08684 C2A_Tac2-N C2 domain f 97.6 6.7E-05 1.5E-09 58.1 3.9 74 433-506 3-86 (103)
241 cd08683 C2_C2cd3 C2 domain fou 97.6 0.00014 3.1E-09 60.7 5.4 94 266-359 1-133 (143)
242 KOG2060 Rab3 effector RIM1 and 97.4 9.2E-05 2E-09 72.4 3.2 109 261-370 266-379 (405)
243 PLN02964 phosphatidylserine de 97.0 0.0012 2.6E-08 71.1 6.1 76 426-506 51-131 (644)
244 PF12416 DUF3668: Cep120 prote 96.8 0.09 1.9E-06 52.6 17.5 230 266-506 2-287 (340)
245 KOG3837 Uncharacterized conser 96.7 0.0016 3.4E-08 64.6 4.2 126 262-394 365-504 (523)
246 cd08398 C2_PI3K_class_I_alpha 96.6 0.067 1.5E-06 47.5 13.1 90 264-357 8-107 (158)
247 PLN02352 phospholipase D epsil 96.5 0.0089 1.9E-07 65.1 8.5 74 428-506 9-91 (758)
248 PF10358 NT-C2: N-terminal C2 96.3 0.21 4.5E-06 43.5 14.9 124 263-398 6-140 (143)
249 cd08683 C2_C2cd3 C2 domain fou 96.0 0.015 3.3E-07 48.9 5.5 67 431-497 1-101 (143)
250 KOG1265 Phospholipase C [Lipid 95.7 0.019 4.2E-07 62.1 6.0 76 427-504 701-786 (1189)
251 PF15627 CEP76-C2: CEP76 C2 do 95.6 0.24 5.3E-06 43.5 11.7 129 261-396 6-153 (156)
252 KOG1265 Phospholipase C [Lipid 95.6 0.022 4.8E-07 61.7 6.2 89 263-359 702-797 (1189)
253 cd08693 C2_PI3K_class_I_beta_d 95.5 0.1 2.2E-06 47.2 9.2 91 264-356 8-120 (173)
254 KOG2060 Rab3 effector RIM1 and 95.2 0.019 4.2E-07 56.6 4.0 77 426-504 266-356 (405)
255 cd08380 C2_PI3K_like C2 domain 95.2 0.12 2.6E-06 45.9 8.9 93 264-357 8-108 (156)
256 cd08398 C2_PI3K_class_I_alpha 95.0 0.1 2.2E-06 46.4 7.5 67 430-497 9-83 (158)
257 KOG1452 Predicted Rho GTPase-a 94.6 0.078 1.7E-06 51.0 6.0 120 259-394 46-168 (442)
258 cd08687 C2_PKN-like C2 domain 94.4 0.41 8.8E-06 37.8 8.6 84 285-392 9-92 (98)
259 cd04012 C2A_PI3K_class_II C2 d 94.2 0.22 4.7E-06 45.0 8.1 93 264-356 8-119 (171)
260 cd08693 C2_PI3K_class_I_beta_d 93.9 0.23 5.1E-06 44.9 7.5 68 430-497 9-85 (173)
261 cd08399 C2_PI3K_class_I_gamma 93.5 0.52 1.1E-05 42.7 8.9 73 265-338 11-88 (178)
262 cd08397 C2_PI3K_class_III C2 d 93.4 0.26 5.7E-06 43.9 6.9 74 283-356 28-107 (159)
263 PF15625 CC2D2AN-C2: CC2D2A N- 93.1 1.6 3.5E-05 39.2 11.6 72 284-359 36-109 (168)
264 PF00792 PI3K_C2: Phosphoinosi 92.9 0.58 1.2E-05 40.8 8.2 55 302-356 23-85 (142)
265 cd08695 C2_Dock-B C2 domains f 92.9 1.1 2.5E-05 40.8 10.2 56 299-354 53-112 (189)
266 PF15627 CEP76-C2: CEP76 C2 do 92.2 0.87 1.9E-05 40.1 8.2 71 427-497 7-96 (156)
267 cd08694 C2_Dock-A C2 domains f 91.8 1.9 4.1E-05 39.5 10.2 56 299-354 53-114 (196)
268 PF14429 DOCK-C2: C2 domain in 91.8 6 0.00013 36.0 13.8 56 300-355 60-120 (184)
269 KOG3837 Uncharacterized conser 91.4 0.1 2.2E-06 52.2 1.7 79 428-506 366-467 (523)
270 cd08380 C2_PI3K_like C2 domain 90.3 1.4 3E-05 39.0 7.9 77 430-506 9-101 (156)
271 smart00142 PI3K_C2 Phosphoinos 87.8 3.4 7.4E-05 33.6 7.8 73 266-338 13-91 (100)
272 cd08399 C2_PI3K_class_I_gamma 87.7 2.5 5.5E-05 38.2 7.6 68 430-497 11-87 (178)
273 smart00142 PI3K_C2 Phosphoinos 84.6 5.9 0.00013 32.1 7.7 67 431-497 13-90 (100)
274 cd08397 C2_PI3K_class_III C2 d 84.2 2.6 5.5E-05 37.6 5.8 61 446-506 29-101 (159)
275 PF12416 DUF3668: Cep120 prote 83.1 3.1 6.8E-05 41.7 6.5 76 431-506 2-88 (340)
276 cd08697 C2_Dock-D C2 domains f 81.0 29 0.00062 31.7 11.4 106 239-355 4-123 (185)
277 KOG1329 Phospholipase D1 [Lipi 78.3 5.1 0.00011 44.6 6.6 107 285-398 138-245 (887)
278 cd08687 C2_PKN-like C2 domain 76.8 11 0.00024 29.9 6.3 47 447-497 9-56 (98)
279 cd04012 C2A_PI3K_class_II C2 d 75.9 14 0.0003 33.3 7.8 69 429-497 8-91 (171)
280 PF00792 PI3K_C2: Phosphoinosi 75.8 6.3 0.00014 34.2 5.5 46 461-506 23-79 (142)
281 PF11618 DUF3250: Protein of u 74.8 16 0.00036 30.0 7.3 84 301-393 13-105 (107)
282 PF08693 SKG6: Transmembrane a 74.8 2.6 5.6E-05 27.8 2.0 14 22-35 26-39 (40)
283 PF15625 CC2D2AN-C2: CC2D2A N- 74.4 13 0.00027 33.4 7.2 58 446-505 36-99 (168)
284 cd08679 C2_DOCK180_related C2 73.9 9.7 0.00021 34.5 6.4 54 301-355 55-115 (178)
285 KOG1452 Predicted Rho GTPase-a 72.7 7.4 0.00016 37.9 5.3 70 425-497 47-122 (442)
286 KOG4092 Mitochondrial F1F0-ATP 72.6 1.6 3.5E-05 34.3 0.7 55 49-103 26-80 (108)
287 cd08696 C2_Dock-C C2 domains f 69.2 15 0.00032 33.4 6.3 56 300-355 55-118 (179)
288 cd08695 C2_Dock-B C2 domains f 68.6 9.4 0.0002 34.9 4.9 39 459-497 54-93 (189)
289 KOG4269 Rac GTPase-activating 64.2 5.6 0.00012 44.1 2.9 74 258-338 753-828 (1112)
290 PF14429 DOCK-C2: C2 domain in 62.3 13 0.00027 33.9 4.6 39 459-497 60-99 (184)
291 cd08694 C2_Dock-A C2 domains f 60.8 16 0.00035 33.5 4.9 39 459-497 54-93 (196)
292 KOG2238 Uncharacterized conser 50.3 5.6 0.00012 43.5 0.2 91 72-163 334-428 (795)
293 KOG0904 Phosphatidylinositol 3 49.6 31 0.00067 38.6 5.5 68 429-496 343-420 (1076)
294 cd08696 C2_Dock-C C2 domains f 48.6 42 0.00091 30.5 5.5 40 458-497 54-94 (179)
295 KOG4027 Uncharacterized conser 47.3 2E+02 0.0044 25.4 10.2 75 281-355 22-110 (187)
296 PF10206 WRW: Mitochondrial F1 45.6 16 0.00035 29.8 2.1 44 50-93 27-70 (104)
297 KOG0694 Serine/threonine prote 44.9 5.5 0.00012 43.1 -0.9 69 284-356 27-95 (694)
298 cd08697 C2_Dock-D C2 domains f 40.8 66 0.0014 29.4 5.5 40 458-497 56-96 (185)
299 KOG2419 Phosphatidylserine dec 37.4 5.9 0.00013 42.2 -2.0 53 445-497 409-461 (975)
300 cd08679 C2_DOCK180_related C2 36.8 58 0.0013 29.4 4.6 37 461-497 55-92 (178)
301 KOG0904 Phosphatidylinositol 3 35.6 1.6E+02 0.0035 33.3 8.2 71 264-337 343-421 (1076)
302 PF05545 FixQ: Cbb3-type cytoc 34.5 13 0.00027 25.8 -0.1 20 18-37 17-36 (49)
303 KOG0694 Serine/threonine prote 31.8 39 0.00085 36.8 2.9 49 446-497 27-76 (694)
304 PF05393 Hum_adeno_E3A: Human 30.8 21 0.00046 27.9 0.6 40 10-49 30-71 (94)
305 PF10358 NT-C2: N-terminal C2 30.6 3.3E+02 0.0072 23.0 8.6 76 430-506 8-98 (143)
306 PF04478 Mid2: Mid2 like cell 28.7 30 0.00065 30.3 1.2 10 16-25 56-65 (154)
307 cd01324 cbb3_Oxidase_CcoQ Cyto 28.3 24 0.00052 24.4 0.5 17 21-37 21-37 (48)
308 PF07162 B9-C2: Ciliary basal 28.1 4.3E+02 0.0093 23.5 10.8 79 269-353 7-101 (168)
309 KOG2419 Phosphatidylserine dec 27.4 14 0.0003 39.6 -1.2 69 427-496 278-353 (975)
310 PF14356 DUF4403: Domain of un 27.1 3.9E+02 0.0085 27.9 9.5 58 177-244 309-366 (427)
311 PF06219 DUF1005: Protein of u 25.3 6.5E+02 0.014 26.1 10.0 64 328-394 95-168 (460)
312 PF10409 PTEN_C2: C2 domain of 25.2 2.8E+02 0.0061 23.3 6.8 90 265-357 5-98 (134)
313 PRK11677 hypothetical protein; 25.0 32 0.00069 29.6 0.7 22 6-32 3-24 (134)
314 PF06295 DUF1043: Protein of u 24.7 30 0.00064 29.5 0.5 21 15-35 3-23 (128)
315 PTZ00382 Variant-specific surf 23.2 52 0.0011 26.5 1.6 14 21-34 80-93 (96)
316 PRK00523 hypothetical protein; 22.9 29 0.00062 26.2 0.1 20 11-30 8-27 (72)
317 KOG4269 Rac GTPase-activating 22.3 49 0.0011 37.1 1.7 67 426-497 756-827 (1112)
318 PF14316 DUF4381: Domain of un 21.3 25 0.00054 30.7 -0.6 15 70-84 66-80 (146)
319 PTZ00447 apical membrane antig 21.0 8.7E+02 0.019 24.5 10.6 110 264-391 58-171 (508)
320 PF06716 DUF1201: Protein of u 20.2 31 0.00067 23.3 -0.2 24 5-33 7-33 (54)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=1.4e-62 Score=522.08 Aligned_cols=457 Identities=27% Similarity=0.509 Sum_probs=375.8
Q ss_pred cccchhhhhhcccccchhHHHHHHHhhheeec----cCCcccccccccccccCCchhHhhhCCCCCCceeCCCCcchHHH
Q 010550 2 GFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSK----PNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWL 77 (507)
Q Consensus 2 ~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~~~d~E~~~Wl 77 (507)
|++||++|++||+++-+++.++ .+.++|+ +.+|..|+...+.+.+ +.+ -.|+|++|||
T Consensus 165 ~v~Swifg~~~fs~~slffii~---~~~~vY~~~~~rv~rnird~v~~~~~~------ek~---------~nd~ESveWL 226 (1227)
T COG5038 165 SVASWIFGYLGFSFASLFFIIL---VTMYVYRTCIKRVRRNIRDLVQQELSE------EKL---------ENDYESVEWL 226 (1227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH------Hhh---------hcchhHHHHH
Confidence 6799999999999555544333 3444454 2233233333333322 222 2699999999
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHhhccCCceeeeEEEeEeeCCCCCCeEeeEEEEec-CCCeEEEeeeeeEeC---
Q 010550 78 NRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEPALRWAG--- 153 (507)
Q Consensus 78 N~~l~~~Wp~~~~~~~~~i~~~~~~~l~~~~p~~~l~~i~~~~~~lG~~~P~i~~ir~~~~-~~~~~~le~~~~~~~--- 153 (507)
|.+|+++||.+++.+++.|.+++|+.|.++.|+| |+.+.+.+||||++||||.+||.|+. ..+.+.||+++++..
T Consensus 227 NtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsF-I~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~ 305 (1227)
T COG5038 227 NTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDI 305 (1227)
T ss_pred HHHHHhheeccChHHHHHHHHHHHHHHHhhcchh-hhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccch
Confidence 9999999999999999999999999999999998 99999999999999999999999986 556899999999963
Q ss_pred ------------CCcEEEEEEE---ee-eEEEEEEEEEEEEEEEEEEEecCCCCCCceeEEEEEcCCCceEEEEEEEcC-
Q 010550 154 ------------NPNIVLVLKL---LS-FRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILG- 216 (507)
Q Consensus 154 ------------~~~i~l~~~~---~~-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~~g- 216 (507)
|++|.|.++. ++ +++||.|+|+.|.|++||+++ |++.+|++..+.++|++.|.+||.++|+|
T Consensus 306 sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~ 384 (1227)
T COG5038 306 SDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGG 384 (1227)
T ss_pred hhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCC
Confidence 4568888865 44 899999999999999999999 99999999999999999999999999986
Q ss_pred ----cccccCcchHHHHHHHHHHHhhhcccCCccceecccccccccccCceEEEEEEEEEeccccccC--cCCCCCcEEE
Q 010550 217 ----GDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKD--FLGTSDPYVK 290 (507)
Q Consensus 217 ----~~i~~ip~l~~~~~~~i~~~l~~~~v~P~~~~~~l~~~~~~~~~~~~g~L~V~v~~A~~L~~~d--~~g~~dpyv~ 290 (507)
.||++||||.+|++++|...+++|+++|+.+++++.+...++...+.|+|.|+|.+|++|...+ ..+..|||++
T Consensus 385 ~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit 464 (1227)
T COG5038 385 DFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYIT 464 (1227)
T ss_pred CccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEE
Confidence 5799999999999999999999999999999999988776558889999999999999999988 6789999999
Q ss_pred EEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEE-EEecc
Q 010550 291 LSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEF-TLDLL 369 (507)
Q Consensus 291 v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~-~~~l~ 369 (507)
+...+... .+|++++++.||+|||+|++.+.. .++.|.++|||.+...+|+.+|++.++|..|.....+.. ...+.
T Consensus 465 ~~~~~r~~--gkT~v~~nt~nPvwNEt~Yi~lns-~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~ 541 (1227)
T COG5038 465 VTFSDRVI--GKTRVKKNTLNPVWNETFYILLNS-FTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL 541 (1227)
T ss_pred EEeccccC--CccceeeccCCccccceEEEEecc-cCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee
Confidence 99765433 489999999999999999999875 467899999999999999999999999999987654332 33332
Q ss_pred ccccCCCCCCCccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCCC--CC
Q 010550 370 KHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGEN--HN 447 (507)
Q Consensus 370 ~~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~--~~ 447 (507)
. +.+..|+|+.+++|+|..++........ + ......+|++.++++++++|.... ..
T Consensus 542 ~--------~~k~vGrL~yDl~ffp~~e~k~~~~~s~---------e-----~~ed~n~GI~k~tl~~~~~l~~~~~~~~ 599 (1227)
T COG5038 542 R--------NTKNVGRLTYDLRFFPVIEDKKELKGSV---------E-----PLEDSNTGILKVTLREVKALDELSSKKD 599 (1227)
T ss_pred c--------cCccceEEEEeeeeecccCCcccccccc---------C-----CcccCCcceeEEEeeccccccCcccccc
Confidence 2 4678899999999999887743332210 0 112234699999999999997632 23
Q ss_pred CcEEEEEEcCeEE-EeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC-CCCeeee
Q 010550 448 NPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK-RTGVIGA 504 (507)
Q Consensus 448 dPyv~v~~~~~~~-kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~-~~~~iG~ 504 (507)
.-+++++.+.++. .|+.++.+.+|.||+.++-.+.+. .+..+.+.+.|. ..+.||+
T Consensus 600 ~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~-~ns~~~~~~~d~~~g~~i~~ 657 (1227)
T COG5038 600 NKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDR-KNSSIKVVTFDVQSGKVIAT 657 (1227)
T ss_pred ceeEEEEecceEEeccceeeeccCCceeeecceEeccC-cceeEEEEecccccCceecc
Confidence 3348899988765 668999999999999999999886 567899999988 5555554
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-30 Score=263.11 Aligned_cols=213 Identities=33% Similarity=0.519 Sum_probs=182.3
Q ss_pred cccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEEE
Q 010550 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVF 335 (507)
Q Consensus 258 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V~ 335 (507)
..+.....|+|+|++|++|+.+|..|.+||||++++.+.+..+.+|++.++|+||.|||+|.|.+.. ...+.|.+.||
T Consensus 161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~ 240 (421)
T KOG1028|consen 161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVY 240 (421)
T ss_pred EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEE
Confidence 3556678999999999999999977789999999999988777899999999999999999999652 35789999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCCcccccccccccccCCCC
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSG 415 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~ 415 (507)
|+|+++++++||++.++|..+.......+|.++....... ....|+|.++++|.|
T Consensus 241 ~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~----~~~~gel~~sL~Y~p--------------------- 295 (421)
T KOG1028|consen 241 DFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS----EELAGELLLSLCYLP--------------------- 295 (421)
T ss_pred ecCCcccccEEEEEEecCccccccccceeeeccccccCCc----ccccceEEEEEEeec---------------------
Confidence 9999999999999999999998887778888886543221 222389999999998
Q ss_pred CCCCCCcccCCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCC
Q 010550 416 NDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH 487 (507)
Q Consensus 416 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~ 487 (507)
.+|.|+|.|.+|+||.. .+.+||||++++.. +++||++++++.||+|||+|.|.|+...+.
T Consensus 296 -----------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~ 364 (421)
T KOG1028|consen 296 -----------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLA 364 (421)
T ss_pred -----------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhh
Confidence 35789999999999985 35799999999843 346999999999999999999999876555
Q ss_pred c-eEEEEEEEC----CCCeeeeEe
Q 010550 488 E-KIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 488 ~-~L~v~V~d~----~~~~iG~~~ 506 (507)
+ .|.|+|||+ .+++||+|.
T Consensus 365 ~~~l~l~V~d~d~~~~~~~iG~~~ 388 (421)
T KOG1028|consen 365 EVSLELTVWDHDTLGSNDLIGRCI 388 (421)
T ss_pred eeEEEEEEEEcccccccceeeEEE
Confidence 5 899999998 677999874
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.87 E-value=2.4e-21 Score=164.32 Aligned_cols=119 Identities=21% Similarity=0.332 Sum_probs=101.3
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCC-CCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKK-NLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~ 341 (507)
.|.|+|+|++|++++..+ .|++||||++.+++++ .+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~---~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAV---YETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEE---EEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 389999999999998777 7999999999998765 48988865 89999999999999753 468999999999999
Q ss_pred CCCeeEEEEEECc-ccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 342 GHDRLGMQLVPLK-LLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 342 ~d~~lG~~~i~l~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
+|++||++.+++. .+..++....|++|... ......|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~------~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGK------QGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCc------cCCCCceEEEEEEeC
Confidence 9999999999996 57777777888888532 123567999999987
No 4
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.85 E-value=7.7e-21 Score=194.18 Aligned_cols=204 Identities=22% Similarity=0.297 Sum_probs=163.7
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d 343 (507)
..|.|+|.+|+||++.+..|.+||||.+.++.+.+ .||.++.+++.|.|.|+|+|.+.. .-+.|.|-|||+| +++|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v--~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV--CRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRD-LKRD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhh--hhhhhhhhhcCCccccceEEecCc-ceeeEEEEEeccc-cccc
Confidence 46899999999999999999999999999997765 689999999999999999999964 4578999999999 9999
Q ss_pred CeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcc
Q 010550 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEE 423 (507)
Q Consensus 344 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (507)
+.||.+.|.-.+|....+...|+.|.. .++ +....|+|++++.+.+....
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~-VD~----dsEVQG~v~l~l~~~e~~~~------------------------- 130 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQP-VDP----DSEVQGKVHLELALTEAIQS------------------------- 130 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccc-cCC----ChhhceeEEEEEEeccccCC-------------------------
Confidence 999999999999987777777877753 333 36789999999998874322
Q ss_pred cCCCceEEEEEEeeeecCCC--CCCCCcEEEEEEcCeE----EEeeeecCCCCCcccceEEEEecCCC-----------C
Q 010550 424 ALSGAGLLSVLVQGAEDVEG--ENHNNPYAIILYKGDK----KRTKMIRKTRDPAWNEEFQFMLDEPP-----------L 486 (507)
Q Consensus 424 ~~~~~g~L~V~v~~a~~L~~--~~~~dPyv~v~~~~~~----~kT~v~~~t~nP~wnE~f~f~v~~~~-----------~ 486 (507)
.+..++.| +++++.. ++..|||+++...+.. ++|+++++|.||.|+|.|.|.+.... .
T Consensus 131 ~~~~c~~L-----~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~ 205 (800)
T KOG2059|consen 131 SGLVCHVL-----KTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEE 205 (800)
T ss_pred Ccchhhhh-----hhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCccc
Confidence 11122223 3334432 3569999999997644 49999999999999999999987541 1
Q ss_pred C---ceEEEEEEEC-----CCCeeeeEe
Q 010550 487 H---EKIHIEVMSK-----RTGVIGACG 506 (507)
Q Consensus 487 ~---~~L~v~V~d~-----~~~~iG~~~ 506 (507)
+ -.|.+++|++ +++|+|+++
T Consensus 206 e~~~l~irv~lW~~~~~~~~~~FlGevr 233 (800)
T KOG2059|consen 206 EDDMLEIRVDLWNDLNLVINDVFLGEVR 233 (800)
T ss_pred CCceeeEEEeeccchhhhhhhhhceeEE
Confidence 1 2688888996 688999875
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.84 E-value=4.9e-20 Score=157.72 Aligned_cols=121 Identities=33% Similarity=0.503 Sum_probs=106.1
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 344 (507)
.|+|+|++|++|+..|..|.+||||++++++.. .++|++++++.||.|||+|.|.+.+. .+.|.|+|||++..++|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~ 77 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT--VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD 77 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE--EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence 489999999999999988999999999998633 36899999999999999999998764 578999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 345 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
+||++.+++.++..+...+.|++|... ++.+..|+|++.++|.|
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDP------NSDEDLGYISLVVTLTP 121 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCC------CCccCceEEEEEEEECC
Confidence 999999999999988888999988532 12457899999999876
No 6
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=3.2e-20 Score=159.99 Aligned_cols=119 Identities=33% Similarity=0.443 Sum_probs=100.9
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeec-----CCCCeEEEEEEEcCCC
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-----PESQILQLQVFDWDKV 340 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-----~~~~~L~v~V~d~~~~ 340 (507)
++|+|++|+||+.++..|.+||||++++++.+ ++|++++++.||+|||+|.|.+.. +....|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~---~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCee---eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999988999999999998654 589999999999999999999976 3567899999999999
Q ss_pred CCCCeeEEEEEECcccC--CCCceEEEEeccccccCCCCCCCccceEEEEEEE
Q 010550 341 GGHDRLGMQLVPLKLLT--PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391 (507)
Q Consensus 341 ~~d~~lG~~~i~l~~l~--~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~ 391 (507)
++|++||++.++++++. .+.....|++|.... ....+.+|+|+++++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~----~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP----GKDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCC----CCCccccceEEEEeC
Confidence 89999999999999987 555667888875321 123457899999873
No 7
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.83 E-value=1.1e-19 Score=154.37 Aligned_cols=115 Identities=34% Similarity=0.513 Sum_probs=103.3
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 344 (507)
+|+|+|++|++|+..+..+.+||||++++++.. .+|+++++|.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe---EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 478999999999999988999999999997644 58999999999999999999998766789999999999988999
Q ss_pred eeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEE
Q 010550 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (507)
Q Consensus 345 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~ 393 (507)
+||++.+++.++..+.....|++|. ...|+|++.++|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~-----------~~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELE-----------DGEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEcc-----------CCCcEEEEEEEec
Confidence 9999999999999888889999873 2369999998875
No 8
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.83 E-value=5.1e-20 Score=156.91 Aligned_cols=117 Identities=32% Similarity=0.444 Sum_probs=100.2
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecC-CCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~ 342 (507)
|.|+|+|++|++|+..+..+.+||||++++++.. ++|+++. ++.||.|||+|.|.+.....+.|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc---cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 6899999999999999988999999999998744 4788764 5799999999999998766788999999998866
Q ss_pred CCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 343 HDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 343 d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
|++||++.+++.++..+.....|+++.. .++.+|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL--------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc--------CCcEeeEEEEEEEC
Confidence 8999999999999876666677777643 24678999999986
No 9
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.83 E-value=1.2e-19 Score=157.98 Aligned_cols=122 Identities=30% Similarity=0.432 Sum_probs=103.9
Q ss_pred cccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 010550 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (507)
Q Consensus 258 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~ 337 (507)
......|.|+|+|++|++|+..|..|.+||||++++++.. .+|++++++.||.|||+|.|.+.++..+.|.++|||+
T Consensus 9 ~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~---~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~ 85 (136)
T cd08375 9 QRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDR 85 (136)
T ss_pred cCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe---eeccccCCCCCCccCceEEEEecCccCCEEEEEEEEC
Confidence 3456789999999999999999989999999999998654 5899999999999999999999877778999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCC-----CceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPH-----ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~-----~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
+..++|++||++.+++.++... .....++.+ ..+..|+|++++++
T Consensus 86 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~----------~~~~~g~i~l~~~~ 135 (136)
T cd08375 86 DFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL----------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc----------ccccceeEEEEEEe
Confidence 9999999999999999999862 222233332 25678999999986
No 10
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.82 E-value=1.5e-19 Score=153.02 Aligned_cols=108 Identities=27% Similarity=0.380 Sum_probs=92.8
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcC----ccCCceeeeecCCCCCCeEeeEEEEEeec---CCCCeEEEEEEEc
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTG----EKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVFDW 337 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~----~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~V~d~ 337 (507)
.|+|+|++|++|+..+ .|.+||||++++.+ .+.++++|+++++|+||+|||+|.|.+.+ +....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 49999999999842 33344689999999999999999999974 3346799999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccc
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN 373 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~ 373 (507)
+..++|++||++.++++++..++....|++|.+.+.
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~ 115 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIH 115 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCccc
Confidence 988889999999999999999988889999866544
No 11
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=1.4e-19 Score=154.52 Aligned_cols=116 Identities=27% Similarity=0.391 Sum_probs=99.0
Q ss_pred EEEEEEEEecc---ccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 010550 265 ILHVKVVRASK---LLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (507)
Q Consensus 265 ~L~V~v~~A~~---L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~ 341 (507)
.|+|+|++|++ |+.+|..|.+||||++++++++ .+|++++++.||+|||+|.|.+.++. ..|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~---~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKW---VRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEE---eEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence 48999999999 8889999999999999998765 48999999999999999999997754 58999999999873
Q ss_pred ------CCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEE
Q 010550 342 ------GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVV 388 (507)
Q Consensus 342 ------~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l 388 (507)
+|++||++.++++++..+.....|++|... + ++..+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~-~---~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL-N---PSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC-C---CCCccCCcEEEe
Confidence 899999999999999988888888888532 1 223556788875
No 12
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.82 E-value=2.3e-19 Score=153.10 Aligned_cols=116 Identities=34% Similarity=0.478 Sum_probs=101.3
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 345 (507)
|+|+|++|++|+..+..+.+||||++++++.....++|++++++.||+|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999975433457999999999999999999998766567899999999988 8999
Q ss_pred eEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 346 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
||++.++++++..+.....|+++. .+.+|++++++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~----------~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLN----------PQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECC----------CCCCceEEEEEEe
Confidence 999999999999988888999873 2357888888764
No 13
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.82 E-value=8.3e-20 Score=152.37 Aligned_cols=106 Identities=21% Similarity=0.234 Sum_probs=88.7
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcC-ccCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG-EKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVF 335 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~-~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V~ 335 (507)
.....|.|+|+|++|++|+ . .|.+||||++++.+ .+..+++|+++++|+||+|||+|.|.+.. .....|.|+||
T Consensus 9 Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~ 85 (118)
T cd08677 9 YDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR 85 (118)
T ss_pred EcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence 4456799999999999998 3 46799999999975 34456799999999999999999999874 34678999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD 367 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 367 (507)
|+|+++++++||++.++++++..+...+.|.+
T Consensus 86 d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 86 CCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred eCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 99999999999999999998865555555543
No 14
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=4.4e-19 Score=156.81 Aligned_cols=128 Identities=25% Similarity=0.294 Sum_probs=105.2
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCC-CCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKK-NLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d 343 (507)
.|+|+|++|++|+.+|..|.+||||+++++++. .+|+++.+ +.||+|||+|.|.+.++..+.+.++|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~---~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV---LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE---eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 489999999999999999999999999999754 58888866 69999999999999876677999999999988889
Q ss_pred CeeEEEEEECcccCCC----CceEEEEeccccccC-CCCCCCccceEEEEEEEEEec
Q 010550 344 DRLGMQLVPLKLLTPH----ETKEFTLDLLKHTNI-SDPKDMKQRGKIVVELTYVPF 395 (507)
Q Consensus 344 ~~lG~~~i~l~~l~~~----~~~~~~~~l~~~~~~-~~~~~~~~~G~i~l~l~~~p~ 395 (507)
++||++.++|+++..+ .....|++|...... .+.+..+.+|+|+|+++|.+.
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 9999999999998743 345678887654210 012335678999999999863
No 15
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.80 E-value=5.3e-19 Score=154.51 Aligned_cols=112 Identities=27% Similarity=0.381 Sum_probs=96.3
Q ss_pred ceEEEEEEEEEeccccccC-cCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEE-Ec
Q 010550 262 PVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-DW 337 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~-d~ 337 (507)
..|.|.|+|++|+||+..+ ..|.+||||++++.+.. ..++||+++++|+||+|||+|.|.+. .....|.++|| |+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence 3589999999999998864 56889999999996543 34679999999999999999999997 57789999999 67
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEeccccccC
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI 374 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~ 374 (507)
+..+++++||++.|+|+++..+.....|++|.....+
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~ 142 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSL 142 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCceeEEecCCcccc
Confidence 8888999999999999999877777889988765443
No 16
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.80 E-value=1.9e-19 Score=155.68 Aligned_cols=100 Identities=45% Similarity=0.746 Sum_probs=91.7
Q ss_pred CceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC
Q 010550 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (507)
Q Consensus 261 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~ 340 (507)
...|.|+|+|++|.+|..+|..+++||||++.+++++. +|+++++++||+|||.|.|.+.++ ...|+++|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l---kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL---KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee---eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence 46799999999999999999889999999999999885 899999999999999999999986 46899999999999
Q ss_pred CCCCeeEEEEEECcccCCCCceEE
Q 010550 341 GGHDRLGMQLVPLKLLTPHETKEF 364 (507)
Q Consensus 341 ~~d~~lG~~~i~l~~l~~~~~~~~ 364 (507)
++||+||.+.|++..+...+...+
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred CcccccceeeeccHHHHHHhhhhc
Confidence 999999999999999987655544
No 17
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=5.4e-19 Score=152.60 Aligned_cols=121 Identities=32% Similarity=0.467 Sum_probs=101.6
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCC---CCeEEEEEEEcCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE---SQILQLQVFDWDKVG 341 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~---~~~L~v~V~d~~~~~ 341 (507)
.|+|+|++|++|+..+..|.+||||+++++++. ++|++++++.||.|||+|.|.+.++. ...|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE---ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 389999999999999988999999999998764 58999999999999999999987543 368999999999886
Q ss_pred -CCCeeEEEEEECcccC-CCCceEEEEeccccccCCCCCCCccceEEEEEEEEE
Q 010550 342 -GHDRLGMQLVPLKLLT-PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (507)
Q Consensus 342 -~d~~lG~~~i~l~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~ 393 (507)
+|++||++.++++++. .+.....|++|.+.. ..++.+|+|+|++.+.
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG-----LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC-----CCCCccEEEEEEEEEc
Confidence 8999999999999998 455667788875421 1235789999999875
No 18
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.80 E-value=8.6e-19 Score=150.68 Aligned_cols=122 Identities=31% Similarity=0.516 Sum_probs=101.0
Q ss_pred eEEEEEEEEEeccccccC-cCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 010550 263 VGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~ 341 (507)
.|.|+|+|++|++|+..+ ..+.+||||++++++. ...++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999765 3467999999999873 23469999999999999999999987 45789999999999988
Q ss_pred CCCeeEEEEEECcccCCCCceE-EEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 342 GHDRLGMQLVPLKLLTPHETKE-FTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 342 ~d~~lG~~~i~l~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
+|++||++.+++.++..+.... .+..+. ..++..|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~--------~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL--------RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhh--------cCCccceEEEEEEEeCC
Confidence 9999999999999998765543 232221 13567899999999987
No 19
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.80 E-value=9.7e-19 Score=150.15 Aligned_cols=122 Identities=30% Similarity=0.485 Sum_probs=104.2
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 344 (507)
.|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT---LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEE---EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 389999999999999988899999999997654 58999999999999999999998766778999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEE
Q 010550 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (507)
Q Consensus 345 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l 390 (507)
+||++.+++.++..+.....|+++...... +....+..|.|++.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~-~~~~~~~~G~l~~~~ 122 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRA-EEESGGNLGSLRLKV 122 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCCC-CccccCceEEEEEEe
Confidence 999999999999877667778887654322 233467889999876
No 20
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.80 E-value=1.1e-18 Score=148.88 Aligned_cols=119 Identities=22% Similarity=0.271 Sum_probs=100.2
Q ss_pred EEEEEEEeccccccC-cCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 010550 266 LHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (507)
Q Consensus 266 L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 344 (507)
|.|+|++|+||+..+ ..|.+||||++++++.. .++|+++++|.||.|||+|.|.+.+. ...|.|.|||++..++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~--~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE--VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc--EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 689999999999874 45789999999997553 36899999999999999999999753 478999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 345 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
+||++.++++++..+.....|+++.+.. ...+.+|+|++++.|
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD-----ADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEccC-----CCCcccEEEEEEEEC
Confidence 9999999999999877778888885431 123468999999864
No 21
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.80 E-value=4.5e-19 Score=151.59 Aligned_cols=105 Identities=31% Similarity=0.369 Sum_probs=92.0
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEe-e--cCCCCeEEEEEEEc
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVV-K--EPESQILQLQVFDW 337 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v-~--~~~~~~L~v~V~d~ 337 (507)
.|.|.|+|++|++|+..+ .+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 588999999999999999 8999999999997542 3457899999999999999999987 2 34567899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
+..+++++||++.++|+++..++....|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999987766777765
No 22
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.80 E-value=8.6e-19 Score=151.57 Aligned_cols=123 Identities=30% Similarity=0.453 Sum_probs=103.0
Q ss_pred EEEEEEEEEeccccccCc--CCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 010550 264 GILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~ 341 (507)
|+|+|+|++|++|+..+. .+.+||||++++++.. .+|++++++.||.|||+|.|.+.+...+.|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~---~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE---EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999888 8899999999997654 58999999999999999999998766789999999999988
Q ss_pred CCCeeEEEEEECcccCC---CCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 342 GHDRLGMQLVPLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 342 ~d~~lG~~~i~l~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
++++||++.+++.++.. ......|++|..... ......+|+|+++++|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~---~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP---GKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCccc---CccccccceEEEEEEC
Confidence 99999999999999873 233466777643211 1234579999999875
No 23
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.79 E-value=2e-18 Score=148.72 Aligned_cols=123 Identities=25% Similarity=0.395 Sum_probs=103.0
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 345 (507)
|.|+|++|+||+. ..|.+||||+++++.. ...++|++++++.||+|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP-PQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCC-CcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 5799999999987 5789999999999742 234699999999999999999999853 46789999999999989999
Q ss_pred eEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEecc
Q 010550 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (507)
Q Consensus 346 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~ 396 (507)
||++.++++++..+.....|+++..... ......|+|++++.|.+..
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~----~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPY----EGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCC----CCCCcceEEEEEEEEeccc
Confidence 9999999999998777777888753211 1356799999999998743
No 24
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.79 E-value=2.6e-18 Score=147.84 Aligned_cols=122 Identities=23% Similarity=0.316 Sum_probs=101.4
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~ 342 (507)
...|+|+|++|+||+.. +.+||||++++++.. ..+|+++ ++.||.|||+|.|.+..+....+.+.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~--~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVK--VARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEe--EEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 35799999999999875 478999999998643 2578874 68999999999998765554689999999999999
Q ss_pred CCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 343 HDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 343 d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
|++||++.++|.++..+.....|+++.+.. ....+..|+|+++++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~----~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS----PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC----CCCCCcCcEEEEEEEEEc
Confidence 999999999999999888788888886531 123467899999999986
No 25
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.78 E-value=1.9e-18 Score=147.86 Aligned_cols=115 Identities=34% Similarity=0.500 Sum_probs=100.2
Q ss_pred EEEEEEEEEeccccccCc------CCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 010550 264 GILHVKVVRASKLLKKDF------LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~------~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~ 337 (507)
|+|+|+|++|++|+..+. .|.+||||++++++. .++|++++++.||.|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ---TFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE---eEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 689999999999998874 368999999999864 36899999999999999999999876678999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
+.. +|++||++.+++.++..+.....|++|. ....|+|+++++|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~----------~~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLE----------DVKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECc----------CCCCceEEEEEeC
Confidence 987 8899999999999998877777888873 2357999998865
No 26
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.78 E-value=4.8e-18 Score=146.32 Aligned_cols=123 Identities=25% Similarity=0.364 Sum_probs=101.8
Q ss_pred ceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 010550 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~ 341 (507)
|.++|+|+|++|++|...+..|.+||||++.++++. .+|++++++.||+|||.|.|.+.+. ...|.|+|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES---VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE---EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999998765 5899999999999999999988764 67899999999876
Q ss_pred CCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 342 GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 342 ~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
+|++||++.+++.++.....+++++. ... ....++..|+|.+++.+.+
T Consensus 76 ~d~~lG~~~~~l~~~~~~~~~~~~l~--~~~---~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDSQTLRTLPLR--KRG---RDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCCcCceEEEcc--cCC---CCCCCCCCCEEEEEEEEcc
Confidence 58999999999998765555554443 211 1234678999999998775
No 27
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.78 E-value=5.2e-18 Score=151.55 Aligned_cols=123 Identities=32% Similarity=0.443 Sum_probs=103.1
Q ss_pred eEEEEEEEEEeccccccC------------------------------cCCCCCcEEEEEEcCccCCceeeeecCCCCCC
Q 010550 263 VGILHVKVVRASKLLKKD------------------------------FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNP 312 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d------------------------------~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP 312 (507)
.|+|.|+|++|++|+++| ..|.+||||++++++.+. .+|++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~--~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV--ARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe--eEEEEeCCCCCC
Confidence 599999999999999987 246789999999987543 589999999999
Q ss_pred eEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 313 EWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 313 ~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
.|||+|.|.+.+. .+.|.|+|||++..+ +++||++.++++++..+.....|+++... ..+..+..|+|+++++|
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~----~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS----NGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC----CCCCCCCCCEEEEEEEE
Confidence 9999999998764 468999999999875 58999999999999988888889988543 11234567899999998
Q ss_pred E
Q 010550 393 V 393 (507)
Q Consensus 393 ~ 393 (507)
.
T Consensus 158 ~ 158 (158)
T cd04015 158 T 158 (158)
T ss_pred C
Confidence 4
No 28
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.78 E-value=1.4e-18 Score=149.30 Aligned_cols=110 Identities=34% Similarity=0.407 Sum_probs=94.2
Q ss_pred ccCceEEEEEEEEEeccccccCcC-CCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~ 333 (507)
.....+.|.|+|++|+||+.+|.. |.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.. .....|.++
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 344568899999999999999875 899999999996543 345799999999999999999999863 345789999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
|||++..+++++||++.++|.++..++....|++|
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 99999999999999999999999877766777765
No 29
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.77 E-value=2.8e-18 Score=147.30 Aligned_cols=110 Identities=31% Similarity=0.421 Sum_probs=94.9
Q ss_pred ccCceEEEEEEEEEeccccccCc-CCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~-~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 333 (507)
.....|.|.|+|++|+||+..+. .|.+||||++++.+.. ..++||++++++.||.|||+|.|.+... ....|.|+
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 44567899999999999998875 4789999999997543 3457899999999999999999998642 35689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
|||++..+++++||++.+++.++...+....|++|
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999999999999999999999988877888876
No 30
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=5.8e-18 Score=144.54 Aligned_cols=114 Identities=25% Similarity=0.360 Sum_probs=95.8
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 344 (507)
.|+|+|++|++|+.. .+||||++++++.. .+|++++++.||+|||+|.|.+.++....|.++|||++.. +++
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~---~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~ 72 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYK---GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD 72 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCcc---ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence 489999999999877 78999999998643 5999999999999999999998776678999999999976 789
Q ss_pred eeEEEEEECcccCCCC-----ceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 345 RLGMQLVPLKLLTPHE-----TKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 345 ~lG~~~i~l~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
+||++.++++++.... ....|++|.... +.+.+|+|++++.|
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~------~~~~~G~i~l~~~~ 119 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK------GGRVGGELMLAVWF 119 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC------CCccceEEEEEEEe
Confidence 9999999999987532 234677775421 24678999999987
No 31
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=7.4e-18 Score=146.77 Aligned_cols=123 Identities=35% Similarity=0.520 Sum_probs=100.8
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCcc----CCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~ 340 (507)
.|+|+|++|++|+..|..|.+||||++++.+.. ....+|++++++.||.|||+|.|.+.. ....|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP-REHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC-CCCEEEEEEEECCCC
Confidence 489999999999999988999999999997641 234689999999999999999999864 356899999999999
Q ss_pred CCCCeeEEEEEECcccCCCCc------eEEEEeccccccCCCCCCCccceEEEEEEEEE
Q 010550 341 GGHDRLGMQLVPLKLLTPHET------KEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (507)
Q Consensus 341 ~~d~~lG~~~i~l~~l~~~~~------~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~ 393 (507)
++|++||++.+++.++..... ...|++|.+. ...++..|+|++++.|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-----SSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-----CCCCcceeEEEEEEeeC
Confidence 999999999999999986532 3456666432 11246799999999883
No 32
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.76 E-value=3.8e-18 Score=146.68 Aligned_cols=110 Identities=31% Similarity=0.567 Sum_probs=96.2
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~d 336 (507)
.....|.|.|+|++|++|+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.++|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 11 YDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred ECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 4556789999999999999999889999999999965433457999999999999999999998643 35689999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
++.++++++||++.++++++..++....|+++
T Consensus 91 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 91 FDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred CCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 99999999999999999999987778888876
No 33
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.76 E-value=1.1e-17 Score=142.66 Aligned_cols=118 Identities=34% Similarity=0.518 Sum_probs=99.6
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d 343 (507)
|.|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.+. .+.+.|+|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR---LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe---eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999998654 5899999999999999999998653 57899999999988899
Q ss_pred CeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 344 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
++||++.+++.++..+.. .|+.+... ....+..|+|++++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~~--~~~~l~~~-----~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGER--KWYALKDK-----KLRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCCc--eEEECccc-----CCCCceeeEEEEEEEe
Confidence 999999999999986654 45555322 1234578999999876
No 34
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.76 E-value=3.1e-18 Score=144.14 Aligned_cols=95 Identities=37% Similarity=0.574 Sum_probs=84.5
Q ss_pred EEEEEEEEEeccccccCcC-CCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC---CCCeEEEEEEEcCC
Q 010550 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQVFDWDK 339 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~V~d~~~ 339 (507)
|+|+|+|++|++|+..|.. +.+||||++++.+.....++|++++++.||.|||+|.|.+... ..+.|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999965433457999999999999999999987643 35689999999999
Q ss_pred CCCCCeeEEEEEECcccCC
Q 010550 340 VGGHDRLGMQLVPLKLLTP 358 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~ 358 (507)
.++|++||++.+++.++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCcceEEEEEHHHHhc
Confidence 9999999999999999983
No 35
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.76 E-value=9e-18 Score=147.66 Aligned_cols=123 Identities=28% Similarity=0.370 Sum_probs=96.5
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEee---------------cCCCC
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVK---------------EPESQ 328 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~---------------~~~~~ 328 (507)
|+|+|++|++|+. .+|.+||||++++.+. +..+++|+++++|.||+|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 7899999999998 4689999999999763 223468999999999999999999985 12235
Q ss_pred eEEEEEEEcCCCCCCCeeEEEEEECcccCCC-CceEEEEeccccccCCC-----CCCCccceEEEEEE
Q 010550 329 ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDLLKHTNISD-----PKDMKQRGKIVVEL 390 (507)
Q Consensus 329 ~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~-----~~~~~~~G~i~l~l 390 (507)
.|.++|||++..++|++||++.|++.++..+ .....|++|....+..+ ..+....|.+++++
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 7999999999888999999999999999876 56677888865533321 11223457777664
No 36
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.75 E-value=2e-17 Score=143.77 Aligned_cols=116 Identities=28% Similarity=0.440 Sum_probs=100.5
Q ss_pred eEEEEEEEEEeccccccCcC----------CCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEE
Q 010550 263 VGILHVKVVRASKLLKKDFL----------GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQL 332 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~----------g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v 332 (507)
.|.|+|+|++|++|+..+.. |.+||||+++++++.. .+|++++++.||.|||+|.|.+. ....|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~--~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE--eEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence 48999999999999988752 6799999999986543 58999999999999999999996 3578999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCC--CCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 333 QVFDWDKVGGHDRLGMQLVPLKLLTP--HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 333 ~V~d~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
.|||++..+++++||++.++|.++.. +.....|++|. +.|+|+++++|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------CCcEEEEEEEEec
Confidence 99999988899999999999999987 55677888772 4699999999875
No 37
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.75 E-value=8.8e-18 Score=144.40 Aligned_cols=110 Identities=35% Similarity=0.456 Sum_probs=95.4
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~d 336 (507)
.....+.|+|+|++|+||+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 3445689999999999999999889999999999976544457999999999999999999998642 35689999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
++.++++++||++.++++++..+.....|+++
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 99999999999999999999877777778765
No 38
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.75 E-value=8.2e-18 Score=140.39 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=68.9
Q ss_pred ceEEEEEEeeeecCCCCCCCCcEEEEEEcC----eEEEeeeecCCCCCcccceEEEEecCCCCCc-eEEEEEEEC----C
Q 010550 428 AGLLSVLVQGAEDVEGENHNNPYAIILYKG----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHE-KIHIEVMSK----R 498 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~~~~dPyv~v~~~~----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~-~L~v~V~d~----~ 498 (507)
.+.|.|+|++|+||+..+.+||||++++.. .+++|+++++|+||+|||+|.|.++...+.+ .|.++|||. +
T Consensus 13 ~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~ 92 (118)
T cd08677 13 KAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSR 92 (118)
T ss_pred CCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCC
Confidence 567999999999999767799999999964 4669999999999999999999987654433 899999998 8
Q ss_pred CCeeeeEe
Q 010550 499 TGVIGACG 506 (507)
Q Consensus 499 ~~~iG~~~ 506 (507)
+++||++.
T Consensus 93 ~d~IG~v~ 100 (118)
T cd08677 93 HSTLGELR 100 (118)
T ss_pred CceEEEEE
Confidence 89999985
No 39
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.75 E-value=6.3e-18 Score=144.26 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=92.1
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc---CCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~ 333 (507)
.....+.|.|+|++|+||+..+..|.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.. .....|.++
T Consensus 9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~ 88 (124)
T cd08680 9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD 88 (124)
T ss_pred ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence 445668999999999999998888899999999997655 246799999999999999999999863 246799999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCC-ceEEEEe
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHE-TKEFTLD 367 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~ 367 (507)
|||++..+++++||++.++|+++.... ....|++
T Consensus 89 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 89 VCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred EEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 999999999999999999999996543 3444543
No 40
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.75 E-value=1.2e-17 Score=144.00 Aligned_cols=110 Identities=28% Similarity=0.374 Sum_probs=92.0
Q ss_pred ccCceEEEEEEEEEeccccccCcC-CCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEE-ee--cCCCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VK--EPESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~--~~~~~~L~v~V 334 (507)
.....+.|+|+|++|+||+..+.. |.+||||++++.+....++||++++++.||.|||+|.|. +. +.....|.++|
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 445568999999999999998876 889999999997655455799999999999999999994 43 22345799999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCC--CceEEEEec
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPH--ETKEFTLDL 368 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~l 368 (507)
||++.+++|++||++.++|+++... +....|+++
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 9999999999999999999999755 456677765
No 41
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.75 E-value=3e-17 Score=141.48 Aligned_cols=118 Identities=31% Similarity=0.434 Sum_probs=99.7
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 344 (507)
.|+|+|++|++|+..+..+.+||||++++.+......+|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998755333468999999999999999999998755678999999999888999
Q ss_pred eeEEEEEECcccCC---CCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 345 RLGMQLVPLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 345 ~lG~~~i~l~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
+||++.++|.++.. +.....|+++. ..|++++.+++.-
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~~~~ 122 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVSMEG 122 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEEEee
Confidence 99999999987643 33566788762 2689999988764
No 42
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.74 E-value=2.8e-17 Score=140.51 Aligned_cols=118 Identities=25% Similarity=0.422 Sum_probs=98.1
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 345 (507)
|.|+|++|++|+..+..|.+||||++++++.. ..+|++++++.||.|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEV--IIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEe--eeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999997643 2589999999999999999999864 34789999999999999999
Q ss_pred eEEEEEECcccCCC-CceEEEEeccccccCCCCCCCccceEEEEEEE
Q 010550 346 LGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391 (507)
Q Consensus 346 lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~ 391 (507)
||++.+++.++... .....|++|... .......|+|++.++
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~-----~~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV-----DPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee-----CCCCccccEEEEEEE
Confidence 99999999888753 235678877432 112456899998874
No 43
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.74 E-value=1.7e-17 Score=142.86 Aligned_cols=110 Identities=28% Similarity=0.335 Sum_probs=91.2
Q ss_pred ccCceEEEEEEEEEeccccccCcC-CCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 333 (507)
.....+.|.|+|++|+||+..+.. |.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.+.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 345568999999999999999875 899999999997653 3456999999999999999999998642 35789999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCC---ceEEEEec
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHE---TKEFTLDL 368 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~---~~~~~~~l 368 (507)
|||++.++++++||++.|+|.++.... ....|++|
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 999999999999999999999996542 33345543
No 44
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.74 E-value=5e-17 Score=141.74 Aligned_cols=120 Identities=25% Similarity=0.433 Sum_probs=98.2
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC---------CCCeEEEEEE
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---------ESQILQLQVF 335 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------~~~~L~v~V~ 335 (507)
.|+|+|++|++|+.+|..|.+||||++++++.. ++|+++++|.||.|||+|.|.+... ....+.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999999999999999998654 5899999999999999999975432 1257999999
Q ss_pred EcCCCCCCCeeEEEEE-ECcccCC---CCceEEEEeccccccCCCCCCCccceEEEEEEEEEec
Q 010550 336 DWDKVGGHDRLGMQLV-PLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i-~l~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~ 395 (507)
|++..++|++||++.+ ++..+.. ......|++|.+ .+...|+|++++++.+.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~--------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK--------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec--------CCCchhheeEEeEEEEe
Confidence 9999999999999986 4444442 356667887743 24578999999999874
No 45
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.74 E-value=4.2e-16 Score=168.26 Aligned_cols=281 Identities=21% Similarity=0.356 Sum_probs=197.5
Q ss_pred CcchHHHHHHHHHHHhhhcccCCcc-------cee---cccc----cccccccCceEEEEEEEEEeccccccCcCCCCCc
Q 010550 222 IPGLYQFIQKCITKYVAGIYIWPQT-------YEI---PILD----ASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDP 287 (507)
Q Consensus 222 ip~l~~~~~~~i~~~l~~~~v~P~~-------~~~---~l~~----~~~~~~~~~~g~L~V~v~~A~~L~~~d~~g~~dp 287 (507)
++....-+.+.|.......++.|.+ ++. |+.- .+......++|.++|+|..|.+|......+.+||
T Consensus 655 i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dP 734 (1227)
T COG5038 655 IATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDP 734 (1227)
T ss_pred eccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCccccc
Confidence 5566666778888888888887776 122 3321 1222367899999999999999998878899999
Q ss_pred EEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCC---ceEE
Q 010550 288 YVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE---TKEF 364 (507)
Q Consensus 288 yv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~---~~~~ 364 (507)
|+++.+.+.. ++||-....++||.||+..+..+..+ .+.+.++++|++..+.|..+|++.++++++.... ....
T Consensus 735 ya~v~~n~~~--k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~ 811 (1227)
T COG5038 735 YATVLVNNLV--KYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME 811 (1227)
T ss_pred ceEEEeccee--EEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEE
Confidence 9999998743 47898889999999999999888775 4679999999999999999999999999987521 1111
Q ss_pred EEeccccccCCCCCCCccceEEEEEEEEEeccCCccc-----------------------cc-------cc---------
Q 010550 365 TLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIK-----------------------FS-------SV--------- 405 (507)
Q Consensus 365 ~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~-----------------------~~-------~~--------- 405 (507)
+..-..........+.+.+|++.+.+.|+|..-.-.. .. .+
T Consensus 812 ~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v 891 (1227)
T COG5038 812 TIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEV 891 (1227)
T ss_pred eecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceee
Confidence 2211111111111135678999999999886421000 00 00
Q ss_pred ---cccc---------------------------------------cc---------C--CCC-----------------
Q 010550 406 ---SKKY---------------------------------------SR---------K--GSG----------------- 415 (507)
Q Consensus 406 ---~~~~---------------------------------------~~---------~--~~~----------------- 415 (507)
.+++ +. . .+.
T Consensus 892 ~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s 971 (1227)
T COG5038 892 EELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYS 971 (1227)
T ss_pred ccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccc
Confidence 0000 00 0 000
Q ss_pred -------C---------------------------------C-CC-------CCc-------ccCCCceEEEEEEeeeec
Q 010550 416 -------N---------------------------------D-QS-------SDE-------EALSGAGLLSVLVQGAED 440 (507)
Q Consensus 416 -------~---------------------------------~-~~-------~~~-------~~~~~~g~L~V~v~~a~~ 440 (507)
. . +. .|. ..-..+|.|.|.+.+|.|
T Consensus 972 ~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~n 1051 (1227)
T COG5038 972 ETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGEN 1051 (1227)
T ss_pred eEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCC
Confidence 0 0 00 000 011235679999999999
Q ss_pred CCCC---CCCCcEEEEEEcCe-EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCeeeeEe
Q 010550 441 VEGE---NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 441 L~~~---~~~dPyv~v~~~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~iG~~~ 506 (507)
|++. +.+||||++.++++ .++|+++++|+||+|||+|...|... ..+.+.+.|+|+ +++.||.+.
T Consensus 1052 l~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~~~knd~lg~~~ 1124 (1227)
T COG5038 1052 LPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VKDVLTINVNDWDSGEKNDLLGTAE 1124 (1227)
T ss_pred CcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecc-ccceEEEEEeecccCCCcccccccc
Confidence 9873 56999999999998 57999999999999999999999875 468899999887 788999874
No 46
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.74 E-value=2.5e-17 Score=140.82 Aligned_cols=107 Identities=29% Similarity=0.418 Sum_probs=91.0
Q ss_pred eecccccccccccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeec-CC
Q 010550 248 EIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-PE 326 (507)
Q Consensus 248 ~~~l~~~~~~~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-~~ 326 (507)
.-|+++......+...|.|+|+|++|++|+. +..+.+||||++++++. .++|++++++.||+|||+|.|.... ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~ 87 (127)
T cd04032 12 SSPNVNSNCCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSP 87 (127)
T ss_pred CCCCcCCCcCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCC
Confidence 3466666554567889999999999999984 66788999999999866 3699999999999999999997533 35
Q ss_pred CCeEEEEEEEcCCCCCCCeeEEEEEECcccCC
Q 010550 327 SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358 (507)
Q Consensus 327 ~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~ 358 (507)
.+.|.|+|||++..++|++||++.++|.....
T Consensus 88 ~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 88 GGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 67999999999999999999999999997663
No 47
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=6.5e-17 Score=139.61 Aligned_cols=118 Identities=31% Similarity=0.455 Sum_probs=100.7
Q ss_pred EEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEEEcCCCCCCCeeE
Q 010550 270 VVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGGHDRLG 347 (507)
Q Consensus 270 v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~d~~~~~~d~~lG 347 (507)
|++|++|+. ..|.+||||++++++.+ ++|++++++.||+|||+|.|.+... ..+.|.++|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~---~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEe---eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 689999998 57899999999998654 5899999999999999999999754 4688999999999998999999
Q ss_pred EEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCC
Q 010550 348 MQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (507)
Q Consensus 348 ~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~ 398 (507)
++.++++++..+.....|++|... ......|+|+++++|.|....
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDS------NGRPTGATISLEVSYQPPDGA 121 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCC------CCCcccEEEEEEEEEeCCCCc
Confidence 999999999988888888887532 123357999999999996544
No 48
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.73 E-value=1.7e-17 Score=138.44 Aligned_cols=94 Identities=22% Similarity=0.315 Sum_probs=81.8
Q ss_pred EEEEEEEEEeccccccCcC----CCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCC-CCeEEEEEEEcC
Q 010550 264 GILHVKVVRASKLLKKDFL----GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~----g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~V~d~~ 338 (507)
|+|.|+|++|++|+..+.. +.+||||++++++.. +||++++++.||+|||.|.|.+.+.. ...|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~---~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV---FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe---EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987632 358999999997543 58999999999999999999986543 457999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCC
Q 010550 339 KVGGHDRLGMQLVPLKLLTPHE 360 (507)
Q Consensus 339 ~~~~d~~lG~~~i~l~~l~~~~ 360 (507)
..++|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999998653
No 49
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.73 E-value=6e-17 Score=138.85 Aligned_cols=118 Identities=36% Similarity=0.554 Sum_probs=95.4
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC--C
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG--H 343 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~--d 343 (507)
|+|+|++|++|+..+..+.+||||++++++.. .++|++++++.||.|||+|.|.+.. .+.|.++|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQ--THSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCcc--ceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 78999999999999988999999999997532 3689999999999999999999965 6799999999998765 5
Q ss_pred CeeEEEEEECcccCCCC-ceEEEEeccccccCCCCCCCccceEEEEEE
Q 010550 344 DRLGMQLVPLKLLTPHE-TKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (507)
Q Consensus 344 ~~lG~~~i~l~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l 390 (507)
++||++.+++.++.... ....|+++... .+ ...+...|+|.+++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~-~~--~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKL-KK--SDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecC-CC--CCCceEeeEEEEEe
Confidence 79999999999987554 33556666322 11 12355689998876
No 50
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.73 E-value=5.1e-17 Score=139.88 Aligned_cols=111 Identities=38% Similarity=0.556 Sum_probs=95.0
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeec---CCCCeEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVF 335 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~V~ 335 (507)
.....+.|+|+|++|++|+..+..+.+||||++++.+......+|++++++.||.|||+|.|.+.. .....|.++||
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 345568999999999999999988999999999996543345799999999999999999997532 23567999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
|++..+++++||++.++++++..+.....|++|.
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999999999999999999999887888888763
No 51
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.73 E-value=3.7e-17 Score=140.23 Aligned_cols=109 Identities=28% Similarity=0.372 Sum_probs=95.2
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEE-ee--cCCCCeEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VK--EPESQILQLQVF 335 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~--~~~~~~L~v~V~ 335 (507)
.....+.|.|+|++|+||+..+..|.+||||++.+.+.+..+++|+++++ .||+|||+|.|. +. +.....|.++||
T Consensus 11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 45566899999999999999998889999999998766556679999888 999999999998 54 224678999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
|++.++++++||++.++|+++..+.....|++|
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred ECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 999999999999999999999888888888876
No 52
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.72 E-value=2.1e-17 Score=140.49 Aligned_cols=105 Identities=24% Similarity=0.267 Sum_probs=87.7
Q ss_pred ceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecCC-CCeEEEEEEEcC
Q 010550 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~V~d~~ 338 (507)
..+.|.|+|++|+||+..+ .|.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.... ...|.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4588999999999999998 7899999999997643 23468999999999999999999986422 357899999998
Q ss_pred CCC-CCCeeEEEEEECcccCCCCceEEEEe
Q 010550 339 KVG-GHDRLGMQLVPLKLLTPHETKEFTLD 367 (507)
Q Consensus 339 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~ 367 (507)
... ++++||++.+++.++..++....|+.
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~ 118 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYY 118 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEe
Confidence 765 46899999999999986665566664
No 53
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.72 E-value=5e-17 Score=135.33 Aligned_cols=99 Identities=30% Similarity=0.451 Sum_probs=87.1
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 344 (507)
.|.|+|++|++|+..+..+.+||||+++++++. ++|++++++.||.|||+|.|.+.++..+.|.|+|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTT---QKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEE---EeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 388999999999999888999999999999743 689999999999999999999998777899999999985 78
Q ss_pred eeEEEEEECcccCCCC--ceEEEEecc
Q 010550 345 RLGMQLVPLKLLTPHE--TKEFTLDLL 369 (507)
Q Consensus 345 ~lG~~~i~l~~l~~~~--~~~~~~~l~ 369 (507)
+||++.++|.++.... ....|++|.
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecC
Confidence 9999999999997653 456777763
No 54
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.71 E-value=7.1e-17 Score=139.37 Aligned_cols=110 Identities=30% Similarity=0.332 Sum_probs=93.8
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V 334 (507)
.....+.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+.. .....|.+.|
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 345568999999999999999988999999999996532 345799999999999999999999853 2357899999
Q ss_pred EEcCCC--CCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 335 FDWDKV--GGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 335 ~d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
||++.. +++++||++.+++.++..++....|++|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999875 6899999999999999877777777765
No 55
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.71 E-value=4.8e-17 Score=139.61 Aligned_cols=110 Identities=31% Similarity=0.414 Sum_probs=92.7
Q ss_pred ccCceEEEEEEEEEeccccccC-cCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 333 (507)
.....|.|.|+|++|+||+..+ ..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.++
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 9 YNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 4456789999999999999988 67899999999986432 2457899999999999999999998642 35689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
|||++..+++++||++.++|+++..+.....|++|
T Consensus 89 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 99999999999999999999999766666667654
No 56
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=9.7e-17 Score=138.11 Aligned_cols=109 Identities=29% Similarity=0.433 Sum_probs=89.2
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecC---CCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~ 333 (507)
.....|.|+|+|++|++|+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.|+
T Consensus 11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence 345568999999999999999888999999999997532 2356899999999999999999986432 35789999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
|||++..+++++||++.++|++... .....|++|
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 9999998899999999999998332 233456654
No 57
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.70 E-value=1.6e-16 Score=136.28 Aligned_cols=110 Identities=28% Similarity=0.386 Sum_probs=95.0
Q ss_pred ccCceEEEEEEEEEeccccccC-cCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~ 335 (507)
.+...+.|.|+|++|++|+..+ ..+.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 9 YDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 4556789999999999999988 678899999999865433457899999999999999999998643 2458999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
|++..+++++||++.++|+++........|++|
T Consensus 89 d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 89 DVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred ECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 999988899999999999999988888888876
No 58
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.70 E-value=2.7e-16 Score=135.64 Aligned_cols=115 Identities=32% Similarity=0.511 Sum_probs=94.1
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC----
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV---- 340 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~---- 340 (507)
.|+|+|++|++|+..|..|.+||||++++++.. .+|++++++.||.|||+|.|.+..+ ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe---eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 589999999999999988999999999997543 5899999999999999999998654 46899999999852
Q ss_pred -------CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEE
Q 010550 341 -------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (507)
Q Consensus 341 -------~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l 390 (507)
+.+++||++.+++.++... ...|+.|.+.. .....+|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~-----~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRT-----DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCC--CCeEEECccCC-----CCCcEeEEEEEEC
Confidence 4689999999999998644 34666664431 2346799999874
No 59
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.70 E-value=4.5e-16 Score=137.04 Aligned_cols=124 Identities=23% Similarity=0.245 Sum_probs=97.3
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEE--cCccCCceeeeecCCCCCCeEeeEEEEEeecCC--------CCeEEEE
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--------SQILQLQ 333 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--------~~~L~v~ 333 (507)
|.|+|....+.+|+..+..+.+||||++++ .+....+.||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 445554444444778777889999999997 334445679999999999999999999996432 4579999
Q ss_pred EEEcCCC-CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 334 VFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 334 V~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
|||++.+ ++|++||++.++|+.+..+.....++++... .....|.|+++++...
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-------~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-------RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-------CCCcCCEEEEEEEecC
Confidence 9999986 5799999999999999887666678887532 2456799999998764
No 60
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=2.7e-16 Score=133.27 Aligned_cols=113 Identities=42% Similarity=0.632 Sum_probs=96.9
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 345 (507)
|+|+|++|++|+..+..+.+||||++++.+.. .++|+++.++.||.|||+|.|.+.....+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~--~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK--VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc--ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999998888899999999997643 3689999999999999999999976667889999999999889999
Q ss_pred eEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEE
Q 010550 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIV 387 (507)
Q Consensus 346 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~ 387 (507)
||++.+++.++..+.....|+++... ++...|.+.
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~-------g~~~~~~~~ 113 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDGQ-------GGGKLGAVF 113 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcCC-------CCccCceEE
Confidence 99999999999988888888887532 344566654
No 61
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.69 E-value=1.6e-16 Score=140.12 Aligned_cols=106 Identities=37% Similarity=0.552 Sum_probs=90.1
Q ss_pred cccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccC--------------------------CceeeeecCCCCC
Q 010550 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL--------------------------PWKKTTVKKKNLN 311 (507)
Q Consensus 258 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~--------------------------~~~~T~v~~~t~n 311 (507)
....+.+.|.|+|++|++|...|..|.+||||++++.+... ..++|++++++.|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 46678999999999999999999999999999999964311 2368999999999
Q ss_pred CeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 312 PEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 312 P~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
|.|||+|.|.+.+...+.|.|+|||++ +++||++.++++++.. .....|++|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999998766789999999997 7899999999999983 334556553
No 62
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.69 E-value=1.3e-16 Score=137.27 Aligned_cols=115 Identities=22% Similarity=0.347 Sum_probs=95.6
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecC-CCCCCeEeeEEEEEeecCC----CCeEEEEEEEcCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPE----SQILQLQVFDWDK 339 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~----~~~L~v~V~d~~~ 339 (507)
+|+|+|++|++|+..+..+.+||||++++++.. +++|++.. ++.||.|||.|.|.+.... ...|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~--~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH--KQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCc--ccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 489999999999999888999999999998722 35888875 5899999999999997753 6789999999998
Q ss_pred CCCCCeeEEEEEECcccCCCCc-----eEEEEeccccccCCCCCCCccceEEEE
Q 010550 340 VGGHDRLGMQLVPLKLLTPHET-----KEFTLDLLKHTNISDPKDMKQRGKIVV 388 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~i~l 388 (507)
.++|++||++.+++.++..+.. ...|+++... +++.+|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-------~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-------SGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-------CCCcCeEEeC
Confidence 8899999999999999986643 3567777532 3677898874
No 63
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.69 E-value=1.2e-16 Score=134.27 Aligned_cols=101 Identities=30% Similarity=0.419 Sum_probs=86.3
Q ss_pred EEEEEEEeccccccCc-CCCCCcEEEEEEcCccCCceeeeecCCCCCCeE-eeEEEEEeecC--CCCeEEEEEEEcCCCC
Q 010550 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEW-NENFKLVVKEP--ESQILQLQVFDWDKVG 341 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~-~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~W-ne~f~f~v~~~--~~~~L~v~V~d~~~~~ 341 (507)
|.|+|++|++|+..+. .|.+||||++++++. .++|++++++.||.| ||+|.|.+... ..+.|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~---~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCe---eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6899999999999884 688999999999863 468999999999999 99999998753 2468999999999999
Q ss_pred CCCeeEEEEEECcccCCC---CceEEEEecc
Q 010550 342 GHDRLGMQLVPLKLLTPH---ETKEFTLDLL 369 (507)
Q Consensus 342 ~d~~lG~~~i~l~~l~~~---~~~~~~~~l~ 369 (507)
++++||++.+++.++... .....|++|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 999999999999999873 3355666653
No 64
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.69 E-value=9.5e-17 Score=139.40 Aligned_cols=108 Identities=25% Similarity=0.275 Sum_probs=88.0
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V 334 (507)
.....+.|.|+|++|+||+..+..|.+||||++++.+. +..+++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 34456789999999999999998899999999999653 3345689999999999999999999864 3467899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
||+|..+++++||++.++.... ++..+.|.++
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~~--g~~~~hW~~m 121 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAAS--GMGLSHWNQM 121 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCCC--ChhHHHHHHH
Confidence 9999999999999999977643 3333444443
No 65
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.69 E-value=1.7e-16 Score=142.25 Aligned_cols=109 Identities=34% Similarity=0.336 Sum_probs=92.2
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeec---CCCCeEEEEE
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQV 334 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~V 334 (507)
..+.|.|.|+|++|+||+..+..|.+||||++++.+. ....++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V 102 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTV 102 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence 4467999999999999999998899999999998542 2345799999999999999999998532 2346899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
||++.+++|++||++.+++.++........|+++
T Consensus 103 ~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 103 WDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred EeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 9999999999999999999999876666666655
No 66
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=2.5e-16 Score=132.76 Aligned_cols=101 Identities=19% Similarity=0.272 Sum_probs=82.9
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~ 342 (507)
++.|.|+|++|++|+.++ ..||||++++++++ .+|++.++ .||.|||.|.|.+.+.. ..|.++|||++.+ .
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k---~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~-~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVK---STTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLI-W 71 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEE---eEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCc-C
Confidence 378999999999997654 56999999998754 48888877 59999999999997754 4599999999865 8
Q ss_pred CCeeEEEEEECcccCCCCce--EEEEeccccc
Q 010550 343 HDRLGMQLVPLKLLTPHETK--EFTLDLLKHT 372 (507)
Q Consensus 343 d~~lG~~~i~l~~l~~~~~~--~~~~~l~~~~ 372 (507)
||+||++.++|.++..++.. ..|++|....
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~ 103 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEV 103 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCCCccEecChHH
Confidence 99999999999999865444 5677775443
No 67
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.68 E-value=2e-16 Score=135.95 Aligned_cols=103 Identities=36% Similarity=0.562 Sum_probs=89.8
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecC-CCCCCeEeeEEEEEeecC---CCCeEEEEEEEcCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEP---ESQILQLQVFDWDK 339 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~---~~~~L~v~V~d~~~ 339 (507)
|.|.|+|++|++|+..+..+.+||||++++++.. ++|++.+ ++.||.|||+|.|.+..+ ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe---eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6899999999999998888899999999997654 4777777 489999999999999876 35789999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
.++|++||++.+++.++..+.....|+.+.
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 889999999999999998776667777664
No 68
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.68 E-value=1.1e-16 Score=138.80 Aligned_cols=108 Identities=25% Similarity=0.308 Sum_probs=88.0
Q ss_pred ccCceEEEEEEEEEeccccccCc--CCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQL 332 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v 332 (507)
.....|.|.|+|++|+||+..|. .+.+||||++++.++ +..++||++++++.||+|||+|.|.+.. .....|.|
T Consensus 10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 34456889999999999999883 355999999999764 4456799999999999999999999864 23678999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 333 ~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
+|||+|.++++++||++.+++.. .++..+.|.++
T Consensus 90 ~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 90 EVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred EEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 99999999999999999999975 33344445444
No 69
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.68 E-value=2.4e-16 Score=136.82 Aligned_cols=92 Identities=26% Similarity=0.494 Sum_probs=78.2
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC-----CCCCcEEEEEEcC
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE-----NHNNPYAIILYKG 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~-----~~~dPyv~v~~~~ 457 (507)
.|+|.++++|.| .++.|.|.|++|+||... +.+||||++++..
T Consensus 1 ~Gel~~sL~Y~~--------------------------------~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~ 48 (138)
T cd08407 1 TGEVLLSISYLP--------------------------------AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKH 48 (138)
T ss_pred CCEEEEEEEEeC--------------------------------CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEc
Confidence 499999999998 345699999999999753 3489999999865
Q ss_pred e-----EEEeeeecCCCCCcccceEEEEecCCCCCc-eEEEEEEEC----CCCeeeeEe
Q 010550 458 D-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHE-KIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ~-----~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~-~L~v~V~d~----~~~~iG~~~ 506 (507)
. ++||++++++.||+|||.|.|.++...+.+ .|.++|||+ ++++||+|.
T Consensus 49 ~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~ 107 (138)
T cd08407 49 QNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCS 107 (138)
T ss_pred CCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEE
Confidence 2 459999999999999999999998754433 899999998 789999985
No 70
>PLN03008 Phospholipase D delta
Probab=99.68 E-value=4.3e-16 Score=165.86 Aligned_cols=130 Identities=28% Similarity=0.468 Sum_probs=109.8
Q ss_pred ceEEEEEEEEEeccccccCc------------------------------------------CCCCCcEEEEEEcCccCC
Q 010550 262 PVGILHVKVVRASKLLKKDF------------------------------------------LGTSDPYVKLSLTGEKLP 299 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~------------------------------------------~g~~dpyv~v~l~~~~~~ 299 (507)
-.|.|.++|.+|++|+++|. .+++||||+|.+++++.
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv- 90 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATL- 90 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcce-
Confidence 35889999999998875321 24679999999986543
Q ss_pred ceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCC
Q 010550 300 WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKD 379 (507)
Q Consensus 300 ~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~ 379 (507)
.||++++++.||+|||+|.|.+.++. ..|.|+|||+|.++ +++||++.+|++++..++....|+++..... +.
T Consensus 91 -~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----kp 163 (868)
T PLN03008 91 -ARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG----KP 163 (868)
T ss_pred -eeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC----CC
Confidence 58999999999999999999998864 58999999999986 5899999999999999999999999976533 23
Q ss_pred CccceEEEEEEEEEeccCCc
Q 010550 380 MKQRGKIVVELTYVPFKEDS 399 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~ 399 (507)
.+..|+|+++++|.|+..+.
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCCCcEEEEEEEEEEccccc
Confidence 56679999999999998764
No 71
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=2.3e-16 Score=135.31 Aligned_cols=93 Identities=33% Similarity=0.519 Sum_probs=83.2
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 344 (507)
+|+|+|++|++|+..|..|.+||||++++++... ..+|++++++.||.|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 4799999999999999889999999999987653 357788889999999999999987777789999999999999999
Q ss_pred eeEEEEEECcccCC
Q 010550 345 RLGMQLVPLKLLTP 358 (507)
Q Consensus 345 ~lG~~~i~l~~l~~ 358 (507)
+||++.+++++..-
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 99999999998764
No 72
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.67 E-value=1.5e-15 Score=131.75 Aligned_cols=118 Identities=24% Similarity=0.374 Sum_probs=93.8
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccC----------CceeeeecCCCCCCeE-eeEEEEEeecCCCCeEEEE
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL----------PWKKTTVKKKNLNPEW-NENFKLVVKEPESQILQLQ 333 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~----------~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~L~v~ 333 (507)
+..|++++|++|+ ++..|++||||++++.+... ..++|+++++++||+| ||+|.|.+. .++.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4678999999998 67789999999999965432 2579999999999999 999999985 35789999
Q ss_pred EEEcCCCCC---CCeeEEEEEECcccCCCC---ceEEEEeccccccCCCCCCCccceEEEEEE
Q 010550 334 VFDWDKVGG---HDRLGMQLVPLKLLTPHE---TKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (507)
Q Consensus 334 V~d~~~~~~---d~~lG~~~i~l~~l~~~~---~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l 390 (507)
|||++..++ +++||++.+++.++..+. ...+++++.+.. ..+..+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-----~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-----PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-----CCCcEEEEEEEEe
Confidence 999875443 789999999999997553 345666665432 2356789998875
No 73
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.67 E-value=3.7e-16 Score=137.03 Aligned_cols=93 Identities=45% Similarity=0.708 Sum_probs=84.9
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~ 342 (507)
.|.|+|+|++|++|+..+. +.+||||+++++++. .+|++++++.||+|||+|.|.+.++ ...+.|+|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~---~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEE---EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 3899999999999999887 899999999998654 6899999999999999999999876 6789999999999999
Q ss_pred CCeeEEEEEECcccCCCC
Q 010550 343 HDRLGMQLVPLKLLTPHE 360 (507)
Q Consensus 343 d~~lG~~~i~l~~l~~~~ 360 (507)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999998653
No 74
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=4.2e-16 Score=132.81 Aligned_cols=103 Identities=27% Similarity=0.463 Sum_probs=89.6
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d 343 (507)
|+|+|+|++|++|+..+..+.+||||++++++.. ..+|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV--KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE--eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 7899999999999999888999999999997543 36889999999999999999988664 47899999999999999
Q ss_pred CeeEEEEEECcccCCCCceEEEEeccc
Q 010550 344 DRLGMQLVPLKLLTPHETKEFTLDLLK 370 (507)
Q Consensus 344 ~~lG~~~i~l~~l~~~~~~~~~~~l~~ 370 (507)
++||++.+++.++..+ ....|+.+..
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 9999999999999876 4556666543
No 75
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.66 E-value=3.8e-16 Score=135.61 Aligned_cols=91 Identities=26% Similarity=0.470 Sum_probs=77.1
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe--
Q 010550 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-- 458 (507)
Q Consensus 384 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~~~~~-- 458 (507)
|+|.++++|.|. .+.|.|+|++|+||+. .+.+||||++++...
T Consensus 2 G~i~~sL~Y~~~--------------------------------~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~ 49 (136)
T cd08406 2 GEILLSLSYLPT--------------------------------AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGR 49 (136)
T ss_pred cEEEEEEEEcCC--------------------------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCc
Confidence 899999999972 3459999999999975 357999999999432
Q ss_pred ---EEEeeeecCCCCCcccceEEEEecCCCCCc-eEEEEEEEC----CCCeeeeEe
Q 010550 459 ---KKRTKMIRKTRDPAWNEEFQFMLDEPPLHE-KIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 459 ---~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~-~L~v~V~d~----~~~~iG~~~ 506 (507)
++||++++++.||+|||+|.|.+....+.+ .|.|+|||+ ++++||++.
T Consensus 50 ~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~ 105 (136)
T cd08406 50 KISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVI 105 (136)
T ss_pred cccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEE
Confidence 459999999999999999999987654434 899999998 689999984
No 76
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=7.6e-16 Score=135.68 Aligned_cols=93 Identities=35% Similarity=0.600 Sum_probs=81.4
Q ss_pred EEEEEEEEeccccccCcCC--------------CCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCC-CCe
Q 010550 265 ILHVKVVRASKLLKKDFLG--------------TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQI 329 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g--------------~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~ 329 (507)
.|.|+|++|++|+.+|..+ .+||||++.+++.+ .+|++++++.||+|||+|.|.+..+. .+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~---~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQK---VKTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEe---eecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 68999999999765 48999999999999999999976443 568
Q ss_pred EEEEEEEcCCCCCCCeeEEEEEECcccCCCC
Q 010550 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360 (507)
Q Consensus 330 L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~ 360 (507)
|.|+|||+|..++|++||++.+++.++...+
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999999999999999999999987653
No 77
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.66 E-value=6.3e-16 Score=134.44 Aligned_cols=100 Identities=35% Similarity=0.519 Sum_probs=86.7
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc----CCceeeeecCCCCCCeEeeEEEEEeecC----CCCeEE
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQILQ 331 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~~L~ 331 (507)
....+.|+|+|++|++|+..+..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|.
T Consensus 12 ~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~ 91 (133)
T cd04009 12 RASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLL 91 (133)
T ss_pred cCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEE
Confidence 34567899999999999999888999999999997532 2457999999999999999999998652 356899
Q ss_pred EEEEEcCCCCCCCeeEEEEEECcccCCC
Q 010550 332 LQVFDWDKVGGHDRLGMQLVPLKLLTPH 359 (507)
Q Consensus 332 v~V~d~~~~~~d~~lG~~~i~l~~l~~~ 359 (507)
|+|||++..++|++||++.++|+++..-
T Consensus 92 ~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 92 FTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 9999999999999999999999999853
No 78
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.66 E-value=7.8e-16 Score=132.16 Aligned_cols=92 Identities=23% Similarity=0.442 Sum_probs=77.6
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCC----CCCCCcEEEEEEcC-
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILYKG- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~----~~~~dPyv~v~~~~- 457 (507)
+|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||++++..
T Consensus 1 ~G~i~~sl~y~~--------------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~ 48 (125)
T cd04029 1 SGEILFSLSYDY--------------------------------KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPD 48 (125)
T ss_pred CcEEEEEEEEEC--------------------------------CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcC
Confidence 499999999986 34669999999999975 25799999999952
Q ss_pred ----eEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 458 ----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
.++||++++++.||+|||+|.|.+..... +..|.++|||+ ++++||++.
T Consensus 49 ~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~ 106 (125)
T cd04029 49 KSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVE 106 (125)
T ss_pred CccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEE
Confidence 35699999999999999999999876433 34899999998 678999985
No 79
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.65 E-value=5.1e-16 Score=135.12 Aligned_cols=109 Identities=35% Similarity=0.412 Sum_probs=90.0
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V 334 (507)
.....|.|.|+|++|++|+..|..|.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 34457999999999999999998899999999999753 23457899999999999999999998643 356899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
||++..+++++||++.+++... ++....|+++.
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~l 120 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINAK--GERLRHWLDCL 120 (133)
T ss_pred EeCCCCCCccEEEEEEEecCCC--CchHHHHHHHH
Confidence 9999988999999999999863 33445565553
No 80
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.64 E-value=1.1e-15 Score=131.52 Aligned_cols=92 Identities=18% Similarity=0.378 Sum_probs=78.0
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC----CCCCcEEEEEEcC-
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILYKG- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~~~~- 457 (507)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++..
T Consensus 1 ~G~i~~sl~Y~~--------------------------------~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~ 48 (128)
T cd08392 1 TGEIEFALHYNF--------------------------------RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPD 48 (128)
T ss_pred CcEEEEEEEEeC--------------------------------CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeC
Confidence 489999999996 245799999999999752 6789999999953
Q ss_pred ----eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeeeEe
Q 010550 458 ----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~~~ 506 (507)
.++||++++++.||+|||+|.|.+....+. ..|.++|||. ++++||++.
T Consensus 49 ~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~ 106 (128)
T cd08392 49 KSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVL 106 (128)
T ss_pred CcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEE
Confidence 356999999999999999999998765444 4999999998 678999985
No 81
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.4e-16 Score=150.54 Aligned_cols=214 Identities=29% Similarity=0.418 Sum_probs=160.0
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEE--eecC-CCCeEEEEE
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV--VKEP-ESQILQLQV 334 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~--v~~~-~~~~L~v~V 334 (507)
+.....+..++.+|++|+.++.++..|||++..+.+. +..+.+|++..+++||.|+|+-... ..+. ....+++.|
T Consensus 89 ~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~v 168 (362)
T KOG1013|consen 89 DSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVV 168 (362)
T ss_pred hhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheee
Confidence 3445678899999999999999999999999999764 3334678899999999999865443 3322 245678899
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccC--CCCCCCccceEEEEEEEEEeccCCcccccccccccccC
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI--SDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRK 412 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~--~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~ 412 (507)
.|.+.+..++++|+..+++..+.+.+.+.+..-|.+.+.+ .+......+|+|.+++.|-..
T Consensus 169 cdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~----------------- 231 (362)
T KOG1013|consen 169 CDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSST----------------- 231 (362)
T ss_pred ccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcC-----------------
Confidence 9999999999999999999999887655443322222221 111123567888888765531
Q ss_pred CCCCCCCCCcccCCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-----EEEeeeecCCCCCcccceEEEEecCC
Q 010550 413 GSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEP 484 (507)
Q Consensus 413 ~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~~~~~-----~~kT~v~~~t~nP~wnE~f~f~v~~~ 484 (507)
..-+.|++.+|..|.. ++.+||||+.++... ++||.+.++|.||+||++|.|.+...
T Consensus 232 ---------------~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pg 296 (362)
T KOG1013|consen 232 ---------------TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPG 296 (362)
T ss_pred ---------------CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCcc
Confidence 1227788888888864 468999999998532 46999999999999999999999876
Q ss_pred CCC-ceEEEEEEEC----CCCeeeeE
Q 010550 485 PLH-EKIHIEVMSK----RTGVIGAC 505 (507)
Q Consensus 485 ~~~-~~L~v~V~d~----~~~~iG~~ 505 (507)
.+. .++.|.|||. +++++|.+
T Consensus 297 dLa~~kv~lsvgd~~~G~s~d~~GG~ 322 (362)
T KOG1013|consen 297 DLAYKKVALSVGDYDIGKSNDSIGGS 322 (362)
T ss_pred chhcceEEEeecccCCCcCccCCCcc
Confidence 553 3899999998 56777754
No 82
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=1.3e-15 Score=128.12 Aligned_cols=102 Identities=25% Similarity=0.325 Sum_probs=85.8
Q ss_pred cCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCC-
Q 010550 281 FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH- 359 (507)
Q Consensus 281 ~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~- 359 (507)
.+|.+||||+++++++. .++|++++++.||.|||+|.|.+.+...+.|.|+|||++.. +|++||++.++|+++...
T Consensus 9 ~~G~~dPYv~v~v~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKL--VYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEECCEE--EEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46889999999998653 25899999999999999999999877678899999999988 899999999999998643
Q ss_pred CceEEEEeccccccCCCCCCCccceEEEEEEEEEec
Q 010550 360 ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (507)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~ 395 (507)
.....|++|. ....|+|++++.|.|.
T Consensus 86 ~~~~~w~~L~----------~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 86 SVGQQWFPLS----------GNGQGRIRISALWKPV 111 (111)
T ss_pred hccceeEECC----------CCCCCEEEEEEEEecC
Confidence 3346777763 1357999999999983
No 83
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.64 E-value=1.1e-15 Score=131.41 Aligned_cols=92 Identities=23% Similarity=0.456 Sum_probs=77.5
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC----CCCCcEEEEEEcC-
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILYKG- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~~~~- 457 (507)
+|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++..
T Consensus 1 ~G~i~~sl~y~~--------------------------------~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~ 48 (125)
T cd08393 1 QGSVQFALDYDP--------------------------------KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPD 48 (125)
T ss_pred CcEEEEEEEEEC--------------------------------CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcC
Confidence 599999999986 235699999999999763 5799999999952
Q ss_pred ----eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeeeEe
Q 010550 458 ----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~~~ 506 (507)
.++||++++++.||+|||.|.|.+...... ..|.++|||. ++++||+++
T Consensus 49 ~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~ 106 (125)
T cd08393 49 KSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVE 106 (125)
T ss_pred CCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEE
Confidence 346999999999999999999998754333 4899999998 678999985
No 84
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.64 E-value=1.9e-15 Score=131.86 Aligned_cols=107 Identities=30% Similarity=0.394 Sum_probs=91.3
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCc-cCCceeeeecCCCCCCeEeeEEEEEeecC---------------CCCe
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-KLPWKKTTVKKKNLNPEWNENFKLVVKEP---------------ESQI 329 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~-~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------------~~~~ 329 (507)
|+|+|++|++|+.+ ..|.+||||++++++. ....++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 7789999999999842 12346899999999999999999998765 4578
Q ss_pred EEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccc
Q 010550 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN 373 (507)
Q Consensus 330 L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~ 373 (507)
|.|+|||++..+++++||++.+++.++........|++|.+...
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence 99999999988899999999999999987777788888866533
No 85
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.64 E-value=7.1e-16 Score=134.74 Aligned_cols=98 Identities=32% Similarity=0.448 Sum_probs=84.5
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcC--ccCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V 334 (507)
.....|.|.|+|++|+||+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 4456789999999999999988889999999999843 33345689999999999999999998752 2356899999
Q ss_pred EEcCCCCCCCeeEEEEEECccc
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLL 356 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l 356 (507)
||++..+++++||++.+++.+.
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC
Confidence 9999999999999999999886
No 86
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.64 E-value=2e-15 Score=126.96 Aligned_cols=98 Identities=28% Similarity=0.362 Sum_probs=83.2
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCC----CCeEEEEEEEcCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDK 339 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L~v~V~d~~~ 339 (507)
-.|+|+|++|++|+ .|.+||||++++++++ ++|++++++.||.|||+|.|.+..+. ...|.|+|||++.
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEe---eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 36899999999998 4789999999999764 58999999999999999999986433 4689999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCce---EEEEec
Q 010550 340 VGGHDRLGMQLVPLKLLTPHETK---EFTLDL 368 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~~~~~---~~~~~l 368 (507)
+++|++||++.++|+++..+..+ ..|++|
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L 108 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLL 108 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEe
Confidence 98999999999999999766433 446655
No 87
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.64 E-value=4.7e-15 Score=127.43 Aligned_cols=118 Identities=29% Similarity=0.450 Sum_probs=93.3
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d 343 (507)
..|.|+|.+|+ |...+..+.+||||+++++++ ..++|++++++.||.|||+|.|.+. ..+.|.|+|||++..+.|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCCCCCC
Confidence 36899999998 555555788999999999865 2469999999999999999999985 357899999999999999
Q ss_pred CeeEEEEEECcccCCCCc-----eEEEEeccccccCCCCCCCccceEEEEEE
Q 010550 344 DRLGMQLVPLKLLTPHET-----KEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (507)
Q Consensus 344 ~~lG~~~i~l~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~i~l~l 390 (507)
++||++.++|.++..... ...|+++.+... ......|+|++++
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSENK----GSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCC----CcceeeeeEEEEe
Confidence 999999999999875432 234666643211 0346789998875
No 88
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.63 E-value=1.4e-15 Score=132.74 Aligned_cols=100 Identities=23% Similarity=0.352 Sum_probs=86.3
Q ss_pred cccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc---cCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEE
Q 010550 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE---KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQL 332 (507)
Q Consensus 258 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~---~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v 332 (507)
......+.|.|+|++|+||+..+..|.+||||++++.+. ...+++|++++++.||+|||+|.|.+.. ..+..|.|
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 345567999999999999999998899999999999643 2235689999999999999999999873 34679999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccC
Q 010550 333 QVFDWDKVGGHDRLGMQLVPLKLLT 357 (507)
Q Consensus 333 ~V~d~~~~~~d~~lG~~~i~l~~l~ 357 (507)
+|||++..+++++||++.+++....
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSG 113 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCC
Confidence 9999999999999999999987654
No 89
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.63 E-value=1.5e-15 Score=129.71 Aligned_cols=99 Identities=31% Similarity=0.453 Sum_probs=86.4
Q ss_pred EEEeccccccCcCCCCCcEEEEEEcCcc----CCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC----CC
Q 010550 270 VVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK----VG 341 (507)
Q Consensus 270 v~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~----~~ 341 (507)
.++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.....+.|.|+|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4789999999988999999999998653 124689999999999999999998765556789999999997 78
Q ss_pred CCCeeEEEEEECcccCCCCceEEEEec
Q 010550 342 GHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 342 ~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
++++||++.++++++..++....++.|
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 999999999999999988777778777
No 90
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.63 E-value=5e-16 Score=135.67 Aligned_cols=107 Identities=31% Similarity=0.400 Sum_probs=87.9
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEE
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~ 335 (507)
....+.|.|+|++|++|+..|..|.+||||++++.+. ...+++|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 11 QPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred eCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 3456889999999999999998899999999998543 23456899999999999999999998632 3467999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
|++..+++++||++.+++... +.....|.++
T Consensus 91 d~d~~~~~~~iG~~~~~~~~~--~~~~~~w~~l 121 (136)
T cd08404 91 DSDRVTKNEVIGRLVLGPKAS--GSGGHHWKEV 121 (136)
T ss_pred ECCCCCCCccEEEEEECCcCC--CchHHHHHHH
Confidence 999999999999999999983 3334445544
No 91
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.63 E-value=6.4e-15 Score=128.44 Aligned_cols=127 Identities=16% Similarity=0.212 Sum_probs=100.7
Q ss_pred ceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 010550 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~ 341 (507)
-...|.|.|++|++|+.++ +|||++.+++... .||+++.++.||.|+|+|+|..... ...++|.||+.+...
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v--aRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~ 80 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY--ARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECCEEE--EEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcc
Confidence 3467999999999998865 8999999998764 6999999999999999999986543 467999998765322
Q ss_pred ----CCCeeEEEEEECcccCCCCceEEEEeccccccCCC---CCCCccceEEEEEEEEEecc
Q 010550 342 ----GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD---PKDMKQRGKIVVELTYVPFK 396 (507)
Q Consensus 342 ----~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~G~i~l~l~~~p~~ 396 (507)
++++||.+.||+.++..+...+.|+++.......+ .......++|+++++|.+..
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 57899999999999999888899999865422110 00124558999999999854
No 92
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.63 E-value=2e-15 Score=129.25 Aligned_cols=80 Identities=14% Similarity=0.240 Sum_probs=66.4
Q ss_pred CceEEEEEEeeeecCCCC---CCCCcEEEEEEcC-----eEEEeeeecCCC-CCcccceEEEEecCCCCCceEEEEEEEC
Q 010550 427 GAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-----DKKRTKMIRKTR-DPAWNEEFQFMLDEPPLHEKIHIEVMSK 497 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-----~~~kT~v~~~t~-nP~wnE~f~f~v~~~~~~~~L~v~V~d~ 497 (507)
.+|.|.|+|.+|+||+.. +.+||||+|++.+ +++||+++++|. ||+|||+|.|.+.....+-+|.|+|||+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 456799999999999863 4579999999842 356999999995 6999999999998754333899999998
Q ss_pred ----CCCeeeeEe
Q 010550 498 ----RTGVIGACG 506 (507)
Q Consensus 498 ----~~~~iG~~~ 506 (507)
++++||++.
T Consensus 92 ~~~~~n~~IG~v~ 104 (135)
T cd08692 92 SSVRRKHFLGQVW 104 (135)
T ss_pred CCCcCCceEEEEE
Confidence 689999985
No 93
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.63 E-value=2.8e-15 Score=128.65 Aligned_cols=108 Identities=37% Similarity=0.507 Sum_probs=91.0
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeec---CCCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~ 333 (507)
.+...+.|+|+|++|++|+..+..+.+||||++++.+. .....+|++++++.||.|||+|.|.... ..+..+.|+
T Consensus 10 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 10 YDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred EeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 44556889999999999999888889999999998532 2345799999999999999999996322 235689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD 367 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 367 (507)
|||++.. .+++||++.++++++..++.+++++.
T Consensus 90 v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 90 VLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 9999988 88999999999999999888887764
No 94
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.63 E-value=2.6e-15 Score=125.23 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=68.9
Q ss_pred eEEEEEEeeeecCCCC-------CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----
Q 010550 429 GLLSVLVQGAEDVEGE-------NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---- 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~-------~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---- 497 (507)
|+|.|+|.+|+||+.. +.+||||+++++++++||++++++.||+|||.|.|.+.....+..|.++|||+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999853 24899999999988889999999999999999999987654445899999998
Q ss_pred CCCeeeeEe
Q 010550 498 RTGVIGACG 506 (507)
Q Consensus 498 ~~~~iG~~~ 506 (507)
+|++||++.
T Consensus 81 ~dd~IG~~~ 89 (108)
T cd04039 81 FNDYVATGS 89 (108)
T ss_pred CCcceEEEE
Confidence 689999985
No 95
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.63 E-value=8.6e-16 Score=134.21 Aligned_cols=98 Identities=37% Similarity=0.545 Sum_probs=84.2
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcC--ccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V 334 (507)
.....|.|+|+|++|++|+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4556799999999999999999889999999999953 333456899999999999999999998632 235799999
Q ss_pred EEcCCCCCCCeeEEEEEECccc
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLL 356 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l 356 (507)
||++.+++|++||++.+++...
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred EeCCCCCCCceeEEEEECCccC
Confidence 9999999999999999999864
No 96
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.63 E-value=1.4e-15 Score=131.88 Aligned_cols=78 Identities=26% Similarity=0.559 Sum_probs=72.4
Q ss_pred CceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CC
Q 010550 427 GAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RT 499 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~ 499 (507)
.-|.|+|.|.+|.||..+ +++||||.+.+++++.||+++++++||+|||.|+|.+.++ +..|.++|||+ +|
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDTFSSD 81 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCCCCcc
Confidence 468999999999999763 5799999999999999999999999999999999999998 68999999999 89
Q ss_pred CeeeeEe
Q 010550 500 GVIGACG 506 (507)
Q Consensus 500 ~~iG~~~ 506 (507)
|+||.++
T Consensus 82 D~mG~A~ 88 (168)
T KOG1030|consen 82 DFMGEAT 88 (168)
T ss_pred cccceee
Confidence 9999875
No 97
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.63 E-value=2.1e-15 Score=129.07 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=85.8
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcC--ccCCceeeeecCCCC-CCeEeeEEEEEeecCC-CCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNL-NPEWNENFKLVVKEPE-SQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~-nP~Wne~f~f~v~~~~-~~~L~v~V 334 (507)
.....|.|+|+|++|+||++.+..+.+||||++++-. .+..++||+++++|. ||.|||+|.|.+.... .-.|.++|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 3456689999999999999876567789999999853 345578999999996 6999999999997533 34788999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD 367 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 367 (507)
||++..+++++||++.++.+.... ...+.|.+
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~~~-~~~~hW~~ 120 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSSSS-EAVEQWKD 120 (135)
T ss_pred EeCCCCcCCceEEEEEECCccCCc-hhhhhHHH
Confidence 999998999999999999987432 22344444
No 98
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.62 E-value=2.8e-15 Score=128.16 Aligned_cols=77 Identities=25% Similarity=0.380 Sum_probs=64.9
Q ss_pred EEEEEEeeeecCCC--CCCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEe-cCCC-CCceEEEEEEEC---
Q 010550 430 LLSVLVQGAEDVEG--ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFML-DEPP-LHEKIHIEVMSK--- 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~--~~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v-~~~~-~~~~L~v~V~d~--- 497 (507)
.|.|+|++|+||+. .+.+||||++++.. .++||++++++.||+|||+|.|.+ .... ....|.++|||+
T Consensus 14 ~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~ 93 (122)
T cd08381 14 TLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSL 93 (122)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCC
Confidence 49999999999976 35799999999963 367999999999999999999987 3222 235899999998
Q ss_pred -CCCeeeeEe
Q 010550 498 -RTGVIGACG 506 (507)
Q Consensus 498 -~~~~iG~~~ 506 (507)
++++||++.
T Consensus 94 ~~~~~lG~~~ 103 (122)
T cd08381 94 VENEFLGGVC 103 (122)
T ss_pred cCCcEEEEEE
Confidence 689999985
No 99
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.62 E-value=1.5e-15 Score=132.28 Aligned_cols=108 Identities=33% Similarity=0.475 Sum_probs=87.4
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcC--ccCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V 334 (507)
.....|.|+|+|++|++|+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4456799999999999999999899999999999853 23445789999999999999999998753 2245799999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
||++..+++++||++.+++... ++....|.++
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~ 120 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPNAD--GQGREHWNEM 120 (134)
T ss_pred EECCCCCCCceeEEEEECCCCC--CchHHHHHHH
Confidence 9999999999999999998733 3333444444
No 100
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.62 E-value=5e-15 Score=129.51 Aligned_cols=91 Identities=24% Similarity=0.323 Sum_probs=76.1
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC----CCCCcEEEEEE
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILY 455 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~~ 455 (507)
....|+|++++.|. .+.|.|+|++|+||+.. +.+||||++++
T Consensus 14 ~~~~G~l~lsl~y~----------------------------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~L 59 (146)
T cd04028 14 SPSMGDIQLGLYDK----------------------------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYL 59 (146)
T ss_pred CCCcceEEEEEEeC----------------------------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEE
Confidence 45679999999883 24599999999999752 46899999999
Q ss_pred cC-----eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEE-C----CCCeeeeEe
Q 010550 456 KG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMS-K----RTGVIGACG 506 (507)
Q Consensus 456 ~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d-~----~~~~iG~~~ 506 (507)
.. .++||+++++|+||+|||+|.|.+.. .+..|.|+||| . ++++||++.
T Consensus 60 lp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l--~~~~L~v~V~~d~~~~~~~~~iG~~~ 118 (146)
T cd04028 60 LEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSP--TGKTLQVIVWGDYGRMDKKVFMGVAQ 118 (146)
T ss_pred ECCCccccceeceecCCCCCCccCCeEEEEEcC--CCCEEEEEEEeCCCCCCCCceEEEEE
Confidence 53 25699999999999999999999982 45799999995 3 678999985
No 101
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.62 E-value=2.5e-15 Score=130.92 Aligned_cols=99 Identities=27% Similarity=0.413 Sum_probs=82.0
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V 334 (507)
.....|.|+|+|++|++|+..|..|.+||||++++.+. ....++|+++++|.||.|||+|.|.+.. .....|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 34456899999999999999998899999999998432 2345789999999999999999999853 2344799999
Q ss_pred EEcCCCCCCCeeEEEEEECcccC
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLT 357 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~ 357 (507)
||++..+++++||++.+......
T Consensus 89 ~d~d~~~~~~~iG~~~l~~~~~~ 111 (135)
T cd08410 89 YGHNVKSSNDFIGRIVIGQYSSG 111 (135)
T ss_pred EeCCCCCCCcEEEEEEEcCccCC
Confidence 99999999999999987654433
No 102
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.60 E-value=6.7e-15 Score=131.96 Aligned_cols=104 Identities=22% Similarity=0.424 Sum_probs=82.1
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc---
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK--- 456 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~--- 456 (507)
+|+|.++++|.|...+.... ......|.|.|+|++|+||+.. +.+||||++++.
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~--------------------~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~ 60 (162)
T cd04020 1 RGELKVALKYVPPESEGALK--------------------SKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDK 60 (162)
T ss_pred CceEEEEEEecCcccccccc--------------------ccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCC
Confidence 59999999999976542211 1122578999999999999864 579999999983
Q ss_pred --CeEEEeeeecCCCCCcccceEEEEecCC-CC-CceEEEEEEEC----CCCeeeeEe
Q 010550 457 --GDKKRTKMIRKTRDPAWNEEFQFMLDEP-PL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 --~~~~kT~v~~~t~nP~wnE~f~f~v~~~-~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
..++||++++++.||+|||.|.|.+... .. +..|.|+|||+ ++++||++.
T Consensus 61 ~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~ 118 (162)
T cd04020 61 SKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVR 118 (162)
T ss_pred CCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEE
Confidence 2467999999999999999999986432 12 24799999998 589999985
No 103
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.60 E-value=1.3e-15 Score=133.04 Aligned_cols=110 Identities=27% Similarity=0.292 Sum_probs=90.0
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V 334 (507)
.....+.|.|+|++|+||+..+ .+.+||||++++.+. ...+++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 3445688999999999999988 788999999998753 2345689999999999999999999863 3457899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
||++..+++++||++.++......++....|.++.
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence 99999999999999999977666555555555543
No 104
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.60 E-value=5.4e-15 Score=129.07 Aligned_cols=92 Identities=25% Similarity=0.441 Sum_probs=77.9
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC--CCCCcEEEEEEcC---
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE--NHNNPYAIILYKG--- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~--~~~dPyv~v~~~~--- 457 (507)
.|+|++++.|.| ..+.|.|+|++|+||+.. +.+||||++++.+
T Consensus 1 ~G~i~~sl~y~~--------------------------------~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~ 48 (137)
T cd08409 1 LGDIQISLTYNP--------------------------------TLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNK 48 (137)
T ss_pred CcEEEEEEEECC--------------------------------CCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCE
Confidence 389999999997 234599999999999753 5799999999864
Q ss_pred --eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeeeEe
Q 010550 458 --DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 --~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~~~ 506 (507)
+++||++++++.||+|||.|.|.+...+.. ..|.++|||. ++++||+++
T Consensus 49 ~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ 104 (137)
T cd08409 49 VVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVV 104 (137)
T ss_pred EeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEE
Confidence 356999999999999999999999765454 4899999998 688999985
No 105
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.59 E-value=1.7e-14 Score=120.00 Aligned_cols=95 Identities=24% Similarity=0.378 Sum_probs=75.1
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEc------
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW------ 337 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~------ 337 (507)
|.|+|++|+||+ +.+||||++.+++.. ....+|+++++|+||+|||+|.|.+. ..+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence 689999999995 568999999997532 34579999999999999999999986 367999999998
Q ss_pred -CCCCCCCeeEEEEEECc--ccCCCCceEEEEe
Q 010550 338 -DKVGGHDRLGMQLVPLK--LLTPHETKEFTLD 367 (507)
Q Consensus 338 -~~~~~d~~lG~~~i~l~--~l~~~~~~~~~~~ 367 (507)
|..++|+++|.+.+.|+ .+.....+...+.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~ 106 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVIS 106 (118)
T ss_pred ccccCcccEEEEEEEEECHHHhccCCeeEEEEE
Confidence 45678999988887774 4444433443343
No 106
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.59 E-value=7.5e-15 Score=125.31 Aligned_cols=80 Identities=19% Similarity=0.329 Sum_probs=67.5
Q ss_pred CceEEEEEEeeeecCCC---CCCCCcEEEEEEcC------eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEE
Q 010550 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG------DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMS 496 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~---~~~~dPyv~v~~~~------~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d 496 (507)
..+.|.|+|++|+||+. ++.+||||++++-. .++||++++++.||+|||+|.|.+....+. ..|.++|||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 34669999999999975 35799999999842 357999999999999999999998765444 399999999
Q ss_pred C----CCCeeeeEe
Q 010550 497 K----RTGVIGACG 506 (507)
Q Consensus 497 ~----~~~~iG~~~ 506 (507)
. ++++||+++
T Consensus 92 ~~~~~~~~~lG~~~ 105 (124)
T cd08680 92 VGPDQQEECLGGAQ 105 (124)
T ss_pred CCCCCceeEEEEEE
Confidence 7 678999975
No 107
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.59 E-value=1.1e-14 Score=123.53 Aligned_cols=76 Identities=26% Similarity=0.326 Sum_probs=67.3
Q ss_pred eEEEEEEeeeecCCCC--CCCCcEEEEEEcCeEEEeeeecC-CCCCcccceEEEEecCCCCCceEEEEEEEC----CCCe
Q 010550 429 GLLSVLVQGAEDVEGE--NHNNPYAIILYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGV 501 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~--~~~dPyv~v~~~~~~~kT~v~~~-t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~ 501 (507)
|.|.|+|.+|++++.. +.+||||++.+++++.+|+++++ +.||+|||+|.|.+... .+.|.|+|||+ +|++
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDERAFTMDER 79 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCCCCcCCce
Confidence 7899999999998653 68999999999999999999876 89999999999999764 36899999998 6799
Q ss_pred eeeEe
Q 010550 502 IGACG 506 (507)
Q Consensus 502 iG~~~ 506 (507)
||++.
T Consensus 80 iG~~~ 84 (121)
T cd04016 80 IAWTH 84 (121)
T ss_pred EEEEE
Confidence 99874
No 108
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.58 E-value=3.4e-14 Score=120.71 Aligned_cols=114 Identities=26% Similarity=0.349 Sum_probs=87.2
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCC--CCeEEEEEEEcCCCCCC
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVFDWDKVGGH 343 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~V~d~~~~~~d 343 (507)
|+|+|++|++|+.. |.+||||++++++.. .++|+++++ .||.|||+|.|.+.... ...|.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~--~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVE--VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEE--eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999876 789999999998643 258999888 99999999999987532 35678888888766556
Q ss_pred CeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 344 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
..+|.+. +..+..+...+.|++|...- ......|+|++++.|
T Consensus 76 ~~~g~v~--l~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVA--LSKLDLGQGKDEWFPLTPVD-----PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEE--ecCcCCCCcceeEEECccCC-----CCCCcCceEEEEEEC
Confidence 6666654 55555566677888875421 124568999999976
No 109
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.58 E-value=7.9e-15 Score=127.80 Aligned_cols=91 Identities=27% Similarity=0.480 Sum_probs=76.5
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC---
Q 010550 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG--- 457 (507)
Q Consensus 384 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~--- 457 (507)
|+|.++++|.| ..|.|.|+|++|+||+.. +.+||||++++..
T Consensus 1 G~i~~~l~y~~--------------------------------~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~ 48 (135)
T cd08410 1 GELLLSLNYLP--------------------------------SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLK 48 (135)
T ss_pred CcEEEEEEECC--------------------------------CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCc
Confidence 78999999997 246699999999999763 5799999999832
Q ss_pred --eEEEeeeecCCCCCcccceEEEEecCCCCCc-eEEEEEEEC----CCCeeeeEe
Q 010550 458 --DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHE-KIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 --~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~-~L~v~V~d~----~~~~iG~~~ 506 (507)
++++|+++++|.||+|||.|.|.+......+ .|.++|||+ ++++||++.
T Consensus 49 ~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~ 104 (135)
T cd08410 49 LIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIV 104 (135)
T ss_pred ccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEE
Confidence 3469999999999999999999996544433 799999998 789999974
No 110
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.58 E-value=1.4e-14 Score=124.85 Aligned_cols=92 Identities=28% Similarity=0.470 Sum_probs=75.1
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC----CCCCcEEEEEEcC-
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILYKG- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~~~~- 457 (507)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++..
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~ 49 (128)
T cd08388 2 LGTLFFSLRYNS--------------------------------EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE 49 (128)
T ss_pred CeEEEEEEEEEC--------------------------------CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC
Confidence 699999999986 245699999999999862 5689999999853
Q ss_pred --eEEEeeeecCCCCCcccceEEEE-ecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 458 --DKKRTKMIRKTRDPAWNEEFQFM-LDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 --~~~kT~v~~~t~nP~wnE~f~f~-v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+++||++++++.||+|||.|.|. +..... +..|.++|||+ ++++||++.
T Consensus 50 ~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~ 106 (128)
T cd08388 50 KEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVV 106 (128)
T ss_pred cCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEE
Confidence 35699999999999999999994 443222 23799999997 689999985
No 111
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.58 E-value=1.2e-14 Score=126.02 Aligned_cols=105 Identities=35% Similarity=0.503 Sum_probs=90.4
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecC-CCCeEEEEEEEcCCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQVFDWDKV 340 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-~~~~L~v~V~d~~~~ 340 (507)
+.|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 889999999999999888889999999999742 22347899999999999999999998653 356899999999988
Q ss_pred CCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 341 GGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 341 ~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
+++++||++.++++++... ....|+++.
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~ 120 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLL 120 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECc
Confidence 8999999999999999865 566788774
No 112
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.58 E-value=4.9e-14 Score=121.68 Aligned_cols=119 Identities=30% Similarity=0.414 Sum_probs=93.9
Q ss_pred EEEEEEEEeccccccC--cCCCCCcEEEEEEcCcc---CCceeeeecCCCC-CCeEeeEEEEEeecCCCCeEEEEEEEcC
Q 010550 265 ILHVKVVRASKLLKKD--FLGTSDPYVKLSLTGEK---LPWKKTTVKKKNL-NPEWNENFKLVVKEPESQILQLQVFDWD 338 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d--~~g~~dpyv~v~l~~~~---~~~~~T~v~~~t~-nP~Wne~f~f~v~~~~~~~L~v~V~d~~ 338 (507)
.|+|+|++|++|+..+ ..+.+||||++++.+.. ..+.+|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57889999999996432 2457899887765 9999999999998766678999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 339 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
.. ++++||++.++++++..+. .++++... .......|.|.+.+++
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~-----~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDS-----KGEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce---EEEEecCC-----CCCCCcceeEEEEEEE
Confidence 87 8999999999999996542 34455321 1112456899888765
No 113
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.58 E-value=1.5e-14 Score=124.25 Aligned_cols=92 Identities=24% Similarity=0.462 Sum_probs=77.9
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc---
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK--- 456 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~--- 456 (507)
+|+|++++.|.+ ..|.|.|+|++|+||+.. +.+||||++++.
T Consensus 2 ~G~l~~sl~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~ 49 (124)
T cd08387 2 RGELHFSLEYDK--------------------------------DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR 49 (124)
T ss_pred CCEEEEEEEECC--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC
Confidence 699999999986 246799999999999863 579999999994
Q ss_pred CeEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 457 GDKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 ~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
.+.++|++++++.||+|||.|.|.+..... +..|.++|||+ ++++||++.
T Consensus 50 ~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~ 104 (124)
T cd08387 50 SNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVE 104 (124)
T ss_pred CCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEE
Confidence 235799999999999999999999876433 34899999998 688999985
No 114
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.58 E-value=1.5e-14 Score=121.42 Aligned_cols=96 Identities=32% Similarity=0.539 Sum_probs=80.0
Q ss_pred EEEEeccccccCcCCCCCcEEEEEEcCcc---CCceeeeecCCCCCCeEeeEEEEEeecCC----CCeEEEEEEEcCCCC
Q 010550 269 KVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDKVG 341 (507)
Q Consensus 269 ~v~~A~~L~~~d~~g~~dpyv~v~l~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L~v~V~d~~~~~ 341 (507)
-.++|++|+..|..|.+||||++++.+.. ...++|++++++.||+|| +|.|.+.... .+.|.|+|||++..+
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 45699999999999999999999987542 234799999999999999 6888764322 578999999999999
Q ss_pred CCCeeEEEEEECcccCCCCceEEE
Q 010550 342 GHDRLGMQLVPLKLLTPHETKEFT 365 (507)
Q Consensus 342 ~d~~lG~~~i~l~~l~~~~~~~~~ 365 (507)
+|++||++.++++++...+..++.
T Consensus 84 ~d~~iG~~~~~l~~l~~~~~~~~~ 107 (110)
T cd04047 84 KHDLIGEFETTLDELLKSSPLEFE 107 (110)
T ss_pred CCcEEEEEEEEHHHHhcCCCceEE
Confidence 999999999999999866555543
No 115
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.57 E-value=1.4e-14 Score=123.08 Aligned_cols=78 Identities=21% Similarity=0.406 Sum_probs=66.1
Q ss_pred eEEEEEEeeeecCCCC--CCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----
Q 010550 429 GLLSVLVQGAEDVEGE--NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---- 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~--~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---- 497 (507)
+.|.|+|++|+||+.. +.+||||++++.. .++||++++++.||+|||+|.|.+......+.|.++|||+
T Consensus 12 ~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~ 91 (119)
T cd08685 12 RKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKS 91 (119)
T ss_pred CEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCc
Confidence 4699999999999764 5789999999964 3569999999999999999999987654445899999997
Q ss_pred -CCCeeeeEe
Q 010550 498 -RTGVIGACG 506 (507)
Q Consensus 498 -~~~~iG~~~ 506 (507)
++++||++.
T Consensus 92 ~~~~~lG~~~ 101 (119)
T cd08685 92 RDSGLLGCMS 101 (119)
T ss_pred CCCEEEEEEE
Confidence 367999975
No 116
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.57 E-value=2.1e-14 Score=121.13 Aligned_cols=75 Identities=25% Similarity=0.411 Sum_probs=68.1
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---CCCeeeeE
Q 010550 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGVIGAC 505 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~iG~~ 505 (507)
+.|+|+|.+|++|++++..||||++.+++++.+|+++++ .||.|||.|.|.+.+. +..|.|+|||+ .|++||++
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~--~~~L~v~V~dkd~~~DD~lG~v 78 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRL--DLGLVIELWNKGLIWDTLVGTV 78 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCC--CCEEEEEEEeCCCcCCCceEEE
Confidence 469999999999998888899999999998889999988 5999999999999775 45699999999 89999998
Q ss_pred e
Q 010550 506 G 506 (507)
Q Consensus 506 ~ 506 (507)
.
T Consensus 79 ~ 79 (127)
T cd08394 79 W 79 (127)
T ss_pred E
Confidence 5
No 117
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.57 E-value=1.3e-14 Score=123.83 Aligned_cols=75 Identities=21% Similarity=0.494 Sum_probs=66.7
Q ss_pred EEEEEEeeeec---CCC---CCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC------
Q 010550 430 LLSVLVQGAED---VEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK------ 497 (507)
Q Consensus 430 ~L~V~v~~a~~---L~~---~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~------ 497 (507)
+|.|+|++|++ |+. .+.+||||++.+++++.+|++++++.||+|||+|.|.+.++ ...|.|+|||+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQSHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCCcccc
Confidence 38999999999 654 36899999999999999999999999999999999999875 35899999998
Q ss_pred ----CCCeeeeEe
Q 010550 498 ----RTGVIGACG 506 (507)
Q Consensus 498 ----~~~~iG~~~ 506 (507)
.|++||++.
T Consensus 79 ~~~~~dd~lG~~~ 91 (126)
T cd08379 79 EAVQPDVLIGKVR 91 (126)
T ss_pred ccCCCCceEEEEE
Confidence 578999975
No 118
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.57 E-value=3.8e-15 Score=129.75 Aligned_cols=108 Identities=37% Similarity=0.427 Sum_probs=90.5
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecCC--CCeEEEEEE
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVF 335 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~V~ 335 (507)
....+.|.|+|++|++|+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|.+.... ...|.|+||
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~ 89 (134)
T cd00276 10 LPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVV 89 (134)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence 3445899999999999999888889999999999754 233468999999999999999999986543 578999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
|++..+++++||++.+++++ .+.....|+++.
T Consensus 90 d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~ 121 (134)
T cd00276 90 DKDSVGRNEVIGQVVLGPDS--GGEELEHWNEML 121 (134)
T ss_pred ecCCCCCCceeEEEEECCCC--CCcHHHHHHHHH
Confidence 99988899999999999999 444556666664
No 119
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.57 E-value=1.2e-15 Score=148.50 Aligned_cols=108 Identities=32% Similarity=0.487 Sum_probs=91.7
Q ss_pred CceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecC-CCCeEEEEEEEc
Q 010550 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQVFDW 337 (507)
Q Consensus 261 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~-~~~~L~v~V~d~ 337 (507)
.....|+|+|.+|+||.++|.+|.|||||++.+-+.. ..+++|++++.++||+|||+|.|.+... ..+.|.++|||+
T Consensus 177 ~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 177 IKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred ecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence 3456899999999999999999999999999996542 3457899999999999999999998743 367899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
|+.+++||+|..++.+++|... +..-|+.++
T Consensus 257 DrTsRNDFMGslSFgisEl~K~-p~~GWyKlL 287 (683)
T KOG0696|consen 257 DRTSRNDFMGSLSFGISELQKA-PVDGWYKLL 287 (683)
T ss_pred cccccccccceecccHHHHhhc-chhhHHHHh
Confidence 9999999999999999999865 344455554
No 120
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.56 E-value=2.4e-14 Score=123.11 Aligned_cols=92 Identities=27% Similarity=0.458 Sum_probs=76.9
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-- 457 (507)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.+
T Consensus 2 ~G~l~~~l~~~~--------------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~ 49 (125)
T cd04031 2 TGRIQIQLWYDK--------------------------------VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDR 49 (125)
T ss_pred cEEEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCC
Confidence 599999999986 346799999999999763 5799999999965
Q ss_pred ---eEEEeeeecCCCCCcccceEEEEecCC-CC-CceEEEEEEEC----CCCeeeeEe
Q 010550 458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEP-PL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ---~~~kT~v~~~t~nP~wnE~f~f~v~~~-~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
.++||++++++.||+|||.|.|.+... +. ...|.++|||+ ++++||++.
T Consensus 50 ~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~ 107 (125)
T cd04031 50 SEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVV 107 (125)
T ss_pred CccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEE
Confidence 456999999999999999999986442 12 35899999998 578999985
No 121
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.56 E-value=2.4e-14 Score=119.13 Aligned_cols=76 Identities=24% Similarity=0.506 Sum_probs=68.3
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC-CCCeeeeE
Q 010550 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK-RTGVIGAC 505 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~-~~~~iG~~ 505 (507)
.|.|+|++|+||+.. +.+||||++++++++++|++++++.||+|||.|.|.+.++ ..+.|.|+|+|+ .+++||++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~~~~iG~~ 79 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKTGKSLGSL 79 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCCCCccEEE
Confidence 389999999999853 5899999999999999999999999999999999999885 357899999998 57899997
Q ss_pred e
Q 010550 506 G 506 (507)
Q Consensus 506 ~ 506 (507)
.
T Consensus 80 ~ 80 (105)
T cd04050 80 T 80 (105)
T ss_pred E
Confidence 5
No 122
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.55 E-value=2.9e-14 Score=122.52 Aligned_cols=92 Identities=27% Similarity=0.398 Sum_probs=77.4
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-- 457 (507)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.+
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~ 49 (124)
T cd08385 2 LGKLQFSLDYDF--------------------------------QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK 49 (124)
T ss_pred ccEEEEEEEEeC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC
Confidence 599999999986 345799999999999863 5789999999853
Q ss_pred -eEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 458 -DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 -~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+.++|++++++.||+|||.|.|.+..... +..|.++|||+ ++++||++.
T Consensus 50 ~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~ 104 (124)
T cd08385 50 KKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVR 104 (124)
T ss_pred CCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEE
Confidence 35699999999999999999999875433 34899999997 678999985
No 123
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.55 E-value=2.5e-14 Score=122.39 Aligned_cols=80 Identities=29% Similarity=0.537 Sum_probs=70.0
Q ss_pred CceEEEEEEeeeecCCC--CCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCC
Q 010550 427 GAGLLSVLVQGAEDVEG--ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTG 500 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~--~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~ 500 (507)
..|.|+|+|++|++|+. .+.+||||+++++++++||++++++.||+|||+|.|.....+..+.|.|+|||+ .|+
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd 105 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDD 105 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCC
Confidence 45899999999999975 357899999999999999999999999999999999854443457999999998 789
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
+||++.
T Consensus 106 ~IG~~~ 111 (127)
T cd04032 106 LLGTCS 111 (127)
T ss_pred eeEEEE
Confidence 999975
No 124
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.55 E-value=2.3e-14 Score=124.98 Aligned_cols=79 Identities=25% Similarity=0.354 Sum_probs=66.7
Q ss_pred ceEEEEEEeeeecCCCC---CCCCcEEEEEEcC------eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC
Q 010550 428 AGLLSVLVQGAEDVEGE---NHNNPYAIILYKG------DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK 497 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~------~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~ 497 (507)
.+.|.|+|.+|+||+.. +.+||||++++.. .++||++++++.||+|||+|.|.+...... ..|.++|||.
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~ 93 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence 45699999999999863 5799999999953 245999999999999999999999764333 4999999998
Q ss_pred ----CCCeeeeEe
Q 010550 498 ----RTGVIGACG 506 (507)
Q Consensus 498 ----~~~~iG~~~ 506 (507)
++++||++.
T Consensus 94 ~~~~~~~~iG~v~ 106 (138)
T cd08408 94 RKMKRKEMIGWFS 106 (138)
T ss_pred CCCCCCcEEEEEE
Confidence 689999974
No 125
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.55 E-value=4.1e-14 Score=122.10 Aligned_cols=93 Identities=17% Similarity=0.368 Sum_probs=77.9
Q ss_pred cceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc--
Q 010550 382 QRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK-- 456 (507)
Q Consensus 382 ~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~-- 456 (507)
+.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 1 ~~G~l~~~l~y~~--------------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~ 48 (127)
T cd04030 1 PLGRIQLTIRYSS--------------------------------QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPD 48 (127)
T ss_pred CCeEEEEEEEEeC--------------------------------CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcC
Confidence 3699999999986 245699999999999863 579999999995
Q ss_pred ---CeEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC------CCCeeeeEe
Q 010550 457 ---GDKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK------RTGVIGACG 506 (507)
Q Consensus 457 ---~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~------~~~~iG~~~ 506 (507)
..++||++++++.||+|||.|.|.+..... +..|.+.|||+ ++++||++.
T Consensus 49 ~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~ 108 (127)
T cd04030 49 KSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVL 108 (127)
T ss_pred CCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEE
Confidence 346799999999999999999999865433 35899999997 468999975
No 126
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.55 E-value=3.4e-14 Score=124.12 Aligned_cols=92 Identities=27% Similarity=0.437 Sum_probs=76.2
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-- 457 (507)
+|+|.++++|.+ ..+.|.|+|++|+||+.. +.+||||++++.+
T Consensus 1 ~G~l~~~l~y~~--------------------------------~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~ 48 (136)
T cd08404 1 RGELLLSLCYQP--------------------------------TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGK 48 (136)
T ss_pred CCeEEEEEEEeC--------------------------------CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCC
Confidence 599999999975 234599999999999863 5799999999853
Q ss_pred e---EEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 458 D---KKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ~---~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+ ++||++++++.||+|||+|.|.+..... ...|.|+|||+ ++++||++.
T Consensus 49 ~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~ 105 (136)
T cd08404 49 KRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLV 105 (136)
T ss_pred ceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEE
Confidence 2 4589999999999999999999875433 23799999998 688999985
No 127
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.54 E-value=4.8e-14 Score=119.37 Aligned_cols=76 Identities=26% Similarity=0.362 Sum_probs=63.5
Q ss_pred EEEEEeeeecCCCC--CCCCcEEEEEEcC-------eEEEeeeecCCCCCcccceEEEEecCCC--CCceEEEEEEEC--
Q 010550 431 LSVLVQGAEDVEGE--NHNNPYAIILYKG-------DKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSK-- 497 (507)
Q Consensus 431 L~V~v~~a~~L~~~--~~~dPyv~v~~~~-------~~~kT~v~~~t~nP~wnE~f~f~v~~~~--~~~~L~v~V~d~-- 497 (507)
|+|+|.+|+||+.. +.+||||+|++.+ ++++|+++.+|+||+|||+|.|.+.... ....|.+.|+|+
T Consensus 2 L~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~ 81 (120)
T cd08395 2 VTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCF 81 (120)
T ss_pred EEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecc
Confidence 89999999999874 6799999999842 2458999999999999999999997532 224799999987
Q ss_pred --CCCeeeeEe
Q 010550 498 --RTGVIGACG 506 (507)
Q Consensus 498 --~~~~iG~~~ 506 (507)
.+++||++.
T Consensus 82 ~~~dd~IG~~~ 92 (120)
T cd08395 82 ARDDRLVGVTV 92 (120)
T ss_pred cCCCCEEEEEE
Confidence 688999985
No 128
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.54 E-value=3.7e-14 Score=122.13 Aligned_cols=76 Identities=26% Similarity=0.398 Sum_probs=66.7
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCC----CCCceEEEEEEEC----CC
Q 010550 431 LSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEP----PLHEKIHIEVMSK----RT 499 (507)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~----~~~~~L~v~V~d~----~~ 499 (507)
++|+|++|+||+.+ +.+||||+++++++++||++++++.||+|||.|.|.+... .....|.++|||+ +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 47999999999853 5799999999999999999999999999999999999772 1346899999998 58
Q ss_pred CeeeeEe
Q 010550 500 GVIGACG 506 (507)
Q Consensus 500 ~~iG~~~ 506 (507)
++||++.
T Consensus 81 ~~iG~~~ 87 (126)
T cd08682 81 KFLGQVS 87 (126)
T ss_pred ceeEEEE
Confidence 9999984
No 129
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.54 E-value=4.1e-14 Score=123.62 Aligned_cols=92 Identities=28% Similarity=0.490 Sum_probs=77.0
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-- 457 (507)
.|+|.+++.|.| ..|.|.|+|.+|+||+.. +.+||||++++.+
T Consensus 1 ~G~l~~~l~y~~--------------------------------~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~ 48 (136)
T cd08402 1 LGDICFSLRYVP--------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNG 48 (136)
T ss_pred CcEEEEEeEEcC--------------------------------CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECC
Confidence 489999999997 346799999999999863 5799999999952
Q ss_pred ---eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeeeEe
Q 010550 458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~~~ 506 (507)
.+++|++++++.||.|||.|.|.+...... ..|.++|||+ ++++||++.
T Consensus 49 ~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~ 105 (136)
T cd08402 49 KRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVV 105 (136)
T ss_pred cccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEE
Confidence 246899999999999999999998754333 3799999998 678999985
No 130
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.53 E-value=5.4e-14 Score=122.84 Aligned_cols=92 Identities=29% Similarity=0.534 Sum_probs=76.6
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCC---CCCCCcEEEEEEc--C
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--G 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~~~--~ 457 (507)
+|+|.++++|.+ ..+.|.|+|++|+||+. .+.+||||++++. +
T Consensus 1 ~G~l~~sl~y~~--------------------------------~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~ 48 (136)
T cd08405 1 RGELLLSLCYNP--------------------------------TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKD 48 (136)
T ss_pred CcEEEEEEEEcC--------------------------------CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCC
Confidence 499999999997 34679999999999975 3579999999983 2
Q ss_pred ---eEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
.+++|++++++.||+|||.|.|.+..... +..|.|+|||+ .+++||++.
T Consensus 49 ~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~ 105 (136)
T cd08405 49 KRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIY 105 (136)
T ss_pred CccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEE
Confidence 24599999999999999999999864322 34899999998 678999985
No 131
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.52 E-value=6.6e-14 Score=121.95 Aligned_cols=91 Identities=25% Similarity=0.509 Sum_probs=76.0
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC---
Q 010550 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG--- 457 (507)
Q Consensus 384 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~--- 457 (507)
|+|.+++.|.+ ..+.|+|+|++|++|+.. +.+||||++++..
T Consensus 1 g~l~~~~~y~~--------------------------------~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~ 48 (134)
T cd08403 1 GELMFSLCYLP--------------------------------TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGR 48 (134)
T ss_pred CeEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCc
Confidence 78999999987 356799999999999863 5799999999842
Q ss_pred --eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeeeEe
Q 010550 458 --DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 --~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~~~ 506 (507)
.+++|++++++.||.|||.|.|.+...... ..|.++|||+ ++++||++.
T Consensus 49 ~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~ 104 (134)
T cd08403 49 RLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCR 104 (134)
T ss_pred ccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEE
Confidence 256999999999999999999998654332 3799999998 689999985
No 132
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.52 E-value=1.1e-13 Score=120.60 Aligned_cols=79 Identities=23% Similarity=0.506 Sum_probs=71.1
Q ss_pred CceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CC
Q 010550 427 GAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RT 499 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~ 499 (507)
..|.|+|+|++|++|+.. +.+||||+++++++.++|++++++.||.|||.|.|.+.++ ..+.|.|+|||+ .|
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~~~~d 91 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDFFSPD 91 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCCCCCC
Confidence 568999999999999753 5799999999999999999999999999999999999775 357899999998 57
Q ss_pred CeeeeEe
Q 010550 500 GVIGACG 506 (507)
Q Consensus 500 ~~iG~~~ 506 (507)
++||++.
T Consensus 92 ~~lG~~~ 98 (136)
T cd08375 92 DFLGRTE 98 (136)
T ss_pred CeeEEEE
Confidence 9999985
No 133
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.52 E-value=1e-13 Score=120.56 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=77.0
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-- 457 (507)
.|+|.+++.|.+ ....|.|+|++|++|+.. +.+||||++++.+
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~ 49 (133)
T cd04009 2 YGVLTVKAYYRA--------------------------------SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRH 49 (133)
T ss_pred ceEEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCC
Confidence 699999999875 234699999999999863 5799999999963
Q ss_pred -----eEEEeeeecCCCCCcccceEEEEecCCC---CCceEEEEEEEC----CCCeeeeEe
Q 010550 458 -----DKKRTKMIRKTRDPAWNEEFQFMLDEPP---LHEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 -----~~~kT~v~~~t~nP~wnE~f~f~v~~~~---~~~~L~v~V~d~----~~~~iG~~~ 506 (507)
.++||+++++|.||+|||.|.|.+...+ .+..|.++|||+ ++++||++.
T Consensus 50 ~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~ 110 (133)
T cd04009 50 LFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAF 110 (133)
T ss_pred cCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEE
Confidence 3569999999999999999999987642 134899999998 589999985
No 134
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.51 E-value=9e-14 Score=122.54 Aligned_cols=76 Identities=29% Similarity=0.488 Sum_probs=68.1
Q ss_pred EEEEEeeeecCCCC-----------------CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEE
Q 010550 431 LSVLVQGAEDVEGE-----------------NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE 493 (507)
Q Consensus 431 L~V~v~~a~~L~~~-----------------~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~ 493 (507)
|.|+|++|+||+.. +.+||||+|.+++++.||++++++.||+|||+|.|.+..++..+.|.++
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999863 2589999999999999999999999999999999998766556799999
Q ss_pred EEEC----CCCeeeeEe
Q 010550 494 VMSK----RTGVIGACG 506 (507)
Q Consensus 494 V~d~----~~~~iG~~~ 506 (507)
|||+ +|++||++.
T Consensus 82 v~D~d~~~~dd~iG~~~ 98 (151)
T cd04018 82 IRDWDRVGNDDVIGTHF 98 (151)
T ss_pred EEECCCCCCCCEEEEEE
Confidence 9998 789999874
No 135
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.51 E-value=9.6e-14 Score=110.28 Aligned_cols=85 Identities=36% Similarity=0.603 Sum_probs=76.7
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 345 (507)
|+|+|++|++|+..+..+.+||||++++.+.....++|+++.++.+|.|+|+|.|.+..+..+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999998754445799999999999999999999887777789999999999988999
Q ss_pred eEEEE
Q 010550 346 LGMQL 350 (507)
Q Consensus 346 lG~~~ 350 (507)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 136
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.51 E-value=1.3e-13 Score=118.18 Aligned_cols=79 Identities=20% Similarity=0.474 Sum_probs=65.9
Q ss_pred ceEEEEEEeeeecCCC----CCCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC
Q 010550 428 AGLLSVLVQGAEDVEG----ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK 497 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~----~~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~ 497 (507)
.+.|.|+|.+|+||+. .+.+||||++++.+ .+++|++++++.||+|||+|.|.+..... ...|.|+|||+
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 92 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHH 92 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeC
Confidence 4679999999999974 35799999999842 35699999999999999999999876433 34899999998
Q ss_pred ----CCCeeeeEe
Q 010550 498 ----RTGVIGACG 506 (507)
Q Consensus 498 ----~~~~iG~~~ 506 (507)
++++||++.
T Consensus 93 ~~~~~~~~iG~~~ 105 (123)
T cd08521 93 DRFGRNTFLGEVE 105 (123)
T ss_pred CCCcCCceeeEEE
Confidence 678999975
No 137
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.50 E-value=2.3e-13 Score=117.03 Aligned_cols=92 Identities=24% Similarity=0.373 Sum_probs=75.4
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc---
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK--- 456 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~--- 456 (507)
.|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~ 49 (125)
T cd08386 2 LGRIQFSVSYDF--------------------------------QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK 49 (125)
T ss_pred ccEEEEEEEECC--------------------------------CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC
Confidence 599999999976 245699999999999753 579999999993
Q ss_pred CeEEEeeeecCCCCCcccceEEEEecCC-C-CCceEEEEEEEC----CCCeeeeEe
Q 010550 457 GDKKRTKMIRKTRDPAWNEEFQFMLDEP-P-LHEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 ~~~~kT~v~~~t~nP~wnE~f~f~v~~~-~-~~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+.+++|++++++.||+|||.|.|.+... . ....|.++|||+ ++++||+++
T Consensus 50 ~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~ 105 (125)
T cd08386 50 KHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVS 105 (125)
T ss_pred CcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEE
Confidence 3567999999999999999999975322 1 134799999997 678999985
No 138
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.50 E-value=1.3e-13 Score=118.15 Aligned_cols=91 Identities=23% Similarity=0.373 Sum_probs=74.7
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-- 457 (507)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +..||||++.+..
T Consensus 2 ~G~l~~sl~Y~~--------------------------------~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~ 49 (124)
T cd08389 2 CGDLDVAFEYDP--------------------------------SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK 49 (124)
T ss_pred CEEEEEEEEECC--------------------------------CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC
Confidence 599999999997 245699999999999863 5789999988743
Q ss_pred -eEEEeeeecCCCCCcccceEEEE-ecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 458 -DKKRTKMIRKTRDPAWNEEFQFM-LDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 -~~~kT~v~~~t~nP~wnE~f~f~-v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+++||+++++ .||+|||.|.|. +..... +..|.++|||+ ++++||++.
T Consensus 50 ~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~ 104 (124)
T cd08389 50 KQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKV 104 (124)
T ss_pred cceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEE
Confidence 3569999888 999999999998 654332 34899999998 689999975
No 139
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.50 E-value=1.1e-13 Score=117.75 Aligned_cols=77 Identities=26% Similarity=0.539 Sum_probs=67.5
Q ss_pred eEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecC-CCCCcccceEEEEecCCCCCceEEEEEEEC---CCCe
Q 010550 429 GLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGV 501 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~-t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~ 501 (507)
|.|.|+|.+|+||+.. +.+||||++++++.+++|+++++ +.||+|||.|.|.+..+ ..+.|.|+|||+ ++++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDKRKPDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCCCCCcc
Confidence 5799999999999863 47999999999998899998765 79999999999999875 357899999998 5789
Q ss_pred eeeEe
Q 010550 502 IGACG 506 (507)
Q Consensus 502 iG~~~ 506 (507)
||++.
T Consensus 80 iG~~~ 84 (118)
T cd08681 80 IGDTE 84 (118)
T ss_pred eEEEE
Confidence 99975
No 140
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.50 E-value=1.4e-13 Score=116.69 Aligned_cols=76 Identities=24% Similarity=0.496 Sum_probs=68.2
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCee
Q 010550 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVI 502 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~i 502 (507)
+++|+|++|+||+.. +.+||||++++++++++|+++++|.||.|||.|.|.+..+ .++.|.|+|||+ .+++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDTGKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCCCCCCCeE
Confidence 478999999999864 5799999999999999999999999999999999999875 357999999998 67999
Q ss_pred eeEe
Q 010550 503 GACG 506 (507)
Q Consensus 503 G~~~ 506 (507)
|++.
T Consensus 80 G~~~ 83 (116)
T cd08376 80 GRCE 83 (116)
T ss_pred EEEE
Confidence 9985
No 141
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.50 E-value=1.9e-13 Score=119.93 Aligned_cols=76 Identities=28% Similarity=0.596 Sum_probs=69.4
Q ss_pred eEEEEEEeeeecCCCC--CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCee
Q 010550 429 GLLSVLVQGAEDVEGE--NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVI 502 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~--~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~i 502 (507)
|.|.|+|++|+||+.. +.+||||+++++++++||++++++.||+|||.|.|.+.++ ...|.++|||+ +|++|
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~~~~dd~i 79 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDTFSKDDSM 79 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCCCCCCCEE
Confidence 7899999999999753 5799999999999999999999999999999999999876 57999999998 67999
Q ss_pred eeEe
Q 010550 503 GACG 506 (507)
Q Consensus 503 G~~~ 506 (507)
|++.
T Consensus 80 G~a~ 83 (145)
T cd04038 80 GEAE 83 (145)
T ss_pred EEEE
Confidence 9975
No 142
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.50 E-value=8.9e-14 Score=118.66 Aligned_cols=74 Identities=27% Similarity=0.427 Sum_probs=67.6
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---CCCeeeeEe
Q 010550 431 LSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGVIGACG 506 (507)
Q Consensus 431 L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~iG~~~ 506 (507)
|.|+|++|+||+.. .+||||++++++++.||++++++.||+|||+|.|.+..+ ....|.++|||+ ++++||++.
T Consensus 2 L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~~~~~~lG~~~ 78 (121)
T cd08378 2 LYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDKAKDDFLGGVC 78 (121)
T ss_pred EEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCCCcCceeeeEE
Confidence 88999999999987 899999999999889999999999999999999998764 356899999998 589999985
No 143
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.49 E-value=7.7e-14 Score=161.97 Aligned_cols=122 Identities=21% Similarity=0.362 Sum_probs=103.4
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCC-CCeEEEEEEEcC
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~V~d~~ 338 (507)
....|.|+|+|++|+||. +..|.+||||++.++++.. +||++++++.||+|||+|+|.+.++. ++.++++|||+|
T Consensus 1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~--~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPP--RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCc--ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 456799999999999998 4478999999999997632 58999999999999999999988765 467999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceE---EEEEEEEEe
Q 010550 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGK---IVVELTYVP 394 (507)
Q Consensus 339 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~---i~l~l~~~p 394 (507)
.+++ +.+|.+.|++.++..++....|+++.++ ++..|+ |++++.|.+
T Consensus 2052 ~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~~--------~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2052 TFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNPE--------SNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred ccCC-CCCceEEEEHHHHhcCceeeeeeecCcc--------cccCCCcceEEEEEEecC
Confidence 9855 4999999999999988888888887531 345677 999998865
No 144
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.49 E-value=1.5e-13 Score=119.52 Aligned_cols=79 Identities=24% Similarity=0.379 Sum_probs=67.0
Q ss_pred ceEEEEEEeeeecCCCC---CCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC-
Q 010550 428 AGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK- 497 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~- 497 (507)
.+.|.|+|++|+||+.. +.+||||++++.+ .+++|++++++.||+|||+|.|.+...... ..|.++|||+
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d 91 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD 91 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence 56799999999999863 5799999999953 246999999999999999999998764333 4899999998
Q ss_pred ---CCCeeeeEe
Q 010550 498 ---RTGVIGACG 506 (507)
Q Consensus 498 ---~~~~iG~~~ 506 (507)
++++||++.
T Consensus 92 ~~~~~~~lG~~~ 103 (133)
T cd08384 92 IGKSNDYIGGLQ 103 (133)
T ss_pred CCCCccEEEEEE
Confidence 679999985
No 145
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.48 E-value=2.6e-13 Score=116.32 Aligned_cols=91 Identities=22% Similarity=0.385 Sum_probs=75.8
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC----CCCCcEEEEEEc---
Q 010550 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILYK--- 456 (507)
Q Consensus 384 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~~~--- 456 (507)
|+|.+++.|.+ ..+.|.|+|.+|+||+.. +.+||||++++.
T Consensus 1 G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~ 48 (123)
T cd08390 1 GRLWFSVQYDL--------------------------------EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE 48 (123)
T ss_pred CEEEEEEEECC--------------------------------CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC
Confidence 78999998886 345799999999999753 468999999984
Q ss_pred CeEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeeeEe
Q 010550 457 GDKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 ~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~~~ 506 (507)
.+.++|++++++.||+|||.|.|.+...... ..|.|+|||. ++++||++.
T Consensus 49 ~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~ 103 (123)
T cd08390 49 RRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVL 103 (123)
T ss_pred CCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEE
Confidence 3456999999999999999999998764332 4899999998 679999985
No 146
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.48 E-value=2.8e-13 Score=116.62 Aligned_cols=77 Identities=23% Similarity=0.420 Sum_probs=69.5
Q ss_pred ceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---CCCe
Q 010550 428 AGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGV 501 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~ 501 (507)
.++|+|+|++|++|... +.+||||++++++++.+|++++++.||+|||.|.|.+.+. +..|.|+|||+ .|++
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~i~V~d~~~~~d~~ 79 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP--RSPIKIQVWNSNLLCDEF 79 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC--CCEEEEEEEECCCCCCCc
Confidence 46899999999999863 5799999999999999999999999999999999988764 57899999998 6899
Q ss_pred eeeEe
Q 010550 502 IGACG 506 (507)
Q Consensus 502 iG~~~ 506 (507)
||+++
T Consensus 80 lG~~~ 84 (126)
T cd04046 80 LGQAT 84 (126)
T ss_pred eEEEE
Confidence 99985
No 147
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.47 E-value=2.9e-13 Score=113.81 Aligned_cols=78 Identities=21% Similarity=0.426 Sum_probs=66.0
Q ss_pred eEEEEEEeeeecCCC---C-CCCCcEEEEEEcC---eEEEeeeecCCCCCcccceEEEEecCCC--CCceEEEEEEEC--
Q 010550 429 GLLSVLVQGAEDVEG---E-NHNNPYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSK-- 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~---~-~~~dPyv~v~~~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~--~~~~L~v~V~d~-- 497 (507)
|+|+|+|++|+||+. . +.+||||++++.+ ..++|+++++|.||+|||.|.|.+.... ....|.++|||+
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 689999999999985 2 5789999999953 3569999999999999999999886542 235899999998
Q ss_pred --CCCeeeeEe
Q 010550 498 --RTGVIGACG 506 (507)
Q Consensus 498 --~~~~iG~~~ 506 (507)
.|++||++.
T Consensus 81 ~~~dd~lG~~~ 91 (111)
T cd04041 81 FTADDRLGRVE 91 (111)
T ss_pred CCCCCcceEEE
Confidence 679999985
No 148
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.47 E-value=2.7e-13 Score=114.02 Aligned_cols=77 Identities=27% Similarity=0.323 Sum_probs=67.9
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCC---CceEEEEEEEC----CCCe
Q 010550 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL---HEKIHIEVMSK----RTGV 501 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~---~~~L~v~V~d~----~~~~ 501 (507)
..|+|+|++|+||. .+.+||||++++++++++|++++++.||.|||.|.|.+..+.. +..|.++|||+ ++++
T Consensus 4 ~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~ 82 (111)
T cd04011 4 FQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTL 82 (111)
T ss_pred EEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCc
Confidence 45899999999999 5789999999999999999999999999999999999866421 35899999998 5799
Q ss_pred eeeEe
Q 010550 502 IGACG 506 (507)
Q Consensus 502 iG~~~ 506 (507)
||++.
T Consensus 83 iG~~~ 87 (111)
T cd04011 83 IGSFK 87 (111)
T ss_pred cEEEE
Confidence 99975
No 149
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.46 E-value=2.8e-13 Score=113.64 Aligned_cols=76 Identities=26% Similarity=0.506 Sum_probs=66.6
Q ss_pred EEEEEeeeecCCC----CCCCCcEEEEEEcCeEEEeeeecCCCCCcc-cceEEEEecCCCC-CceEEEEEEEC----CCC
Q 010550 431 LSVLVQGAEDVEG----ENHNNPYAIILYKGDKKRTKMIRKTRDPAW-NEEFQFMLDEPPL-HEKIHIEVMSK----RTG 500 (507)
Q Consensus 431 L~V~v~~a~~L~~----~~~~dPyv~v~~~~~~~kT~v~~~t~nP~w-nE~f~f~v~~~~~-~~~L~v~V~d~----~~~ 500 (507)
|.|+|++|+||+. .+.+||||+++++++++||++++++.||.| ||.|.|.+..... ++.|.|+|||+ +++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5799999999975 246899999999998899999999999999 9999999987543 35899999998 578
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
+||++.
T Consensus 81 ~iG~~~ 86 (110)
T cd08688 81 AIGKVY 86 (110)
T ss_pred ceEEEE
Confidence 999985
No 150
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.45 E-value=4.5e-13 Score=114.43 Aligned_cols=77 Identities=25% Similarity=0.561 Sum_probs=68.6
Q ss_pred eEEEEEEeeeecCCCC---------CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC--
Q 010550 429 GLLSVLVQGAEDVEGE---------NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK-- 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~---------~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~-- 497 (507)
|+|.|+|.+|+||+.. +.+||||+++++++.++|++++++.||+|||.|.|.+..+ .++.|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC
Confidence 6799999999999853 3689999999999889999999999999999999999765 357999999998
Q ss_pred -CCCeeeeEe
Q 010550 498 -RTGVIGACG 506 (507)
Q Consensus 498 -~~~~iG~~~ 506 (507)
++++||++.
T Consensus 80 ~~~~~iG~~~ 89 (121)
T cd08391 80 DKDDFLGRLS 89 (121)
T ss_pred CCCCcEEEEE
Confidence 678999975
No 151
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.45 E-value=5.1e-13 Score=115.33 Aligned_cols=77 Identities=25% Similarity=0.437 Sum_probs=68.8
Q ss_pred eEEEEEEeeeecCCC-----CCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CC
Q 010550 429 GLLSVLVQGAEDVEG-----ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RT 499 (507)
Q Consensus 429 g~L~V~v~~a~~L~~-----~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~ 499 (507)
|+|+|+|++|+||+. .+.+||||++.+++++.+|++++++.||.|||.|.|.+..+ .++.|.|+|||+ .+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLKLILWDKDRFAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEEEEEEECCCCCCC
Confidence 689999999999974 35789999999999999999999999999999999999874 357999999998 67
Q ss_pred CeeeeEe
Q 010550 500 GVIGACG 506 (507)
Q Consensus 500 ~~iG~~~ 506 (507)
++||++.
T Consensus 80 ~~lG~~~ 86 (128)
T cd04024 80 DYLGEFD 86 (128)
T ss_pred CcceEEE
Confidence 8999875
No 152
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.45 E-value=5.8e-13 Score=117.78 Aligned_cols=76 Identities=22% Similarity=0.395 Sum_probs=66.6
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecC-CCCCcccceEEEEecCCCCCceEEEEEEEC----CCCe
Q 010550 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGV 501 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~-t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~ 501 (507)
.|.|+|.+|+||+.. +.+||||++++++++.+|+++.+ +.||+|||.|+|.+.++ ..+.|.|+|+|+ ++++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~~~~dd~ 79 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVGPNKDEP 79 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecCCCCCCe
Confidence 388999999999753 58999999999999999999876 69999999999999775 346899999998 5799
Q ss_pred eeeEe
Q 010550 502 IGACG 506 (507)
Q Consensus 502 iG~~~ 506 (507)
||++.
T Consensus 80 lG~v~ 84 (150)
T cd04019 80 LGRAV 84 (150)
T ss_pred EEEEE
Confidence 99975
No 153
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.45 E-value=6.7e-13 Score=113.46 Aligned_cols=74 Identities=20% Similarity=0.492 Sum_probs=65.8
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcC-eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCee
Q 010550 431 LSVLVQGAEDVEGE---NHNNPYAIILYKG-DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVI 502 (507)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dPyv~v~~~~-~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~i 502 (507)
|+|+|++|+||+.. +.+||||++++++ ..++|++++++.||+|||.|.|.+..+ ++.|.++|||+ ++++|
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCCCCCCcce
Confidence 88999999999863 5799999999988 467999999999999999999998764 57899999998 77899
Q ss_pred eeEe
Q 010550 503 GACG 506 (507)
Q Consensus 503 G~~~ 506 (507)
|++.
T Consensus 80 G~~~ 83 (121)
T cd04042 80 GSAF 83 (121)
T ss_pred EEEE
Confidence 9985
No 154
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.8e-13 Score=138.74 Aligned_cols=128 Identities=27% Similarity=0.428 Sum_probs=103.2
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~ 339 (507)
..-...++++|++|++|..+|..|++||||.+.++..+ ++|+++...+||+|||.|+|.+++ .+..++++|||+|.
T Consensus 291 skwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktk---rrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~ 366 (1283)
T KOG1011|consen 291 SKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTK---RRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDN 366 (1283)
T ss_pred cccceeeEEeeeecccceecccCCCCCCcEEEeecccc---hhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcc
Confidence 34567899999999999999999999999999999665 589999999999999999999987 46789999999884
Q ss_pred C-----------CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCC
Q 010550 340 V-----------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (507)
Q Consensus 340 ~-----------~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~ 398 (507)
. .+|||+|+..|.++.|...-..|+.++ ++.+ ....+|.|++.+...-..++
T Consensus 367 dlksklrqkl~resddflgqtvievrtlsgemdvwynle--krtd-----ksavsgairlhisveikgee 429 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLE--KRTD-----KSAVSGAIRLHISVEIKGEE 429 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEecccchhhhcchh--hccc-----hhhccceEEEEEEEEEcCcc
Confidence 3 478999999999999987655555443 3322 24578888877766554443
No 155
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.44 E-value=7.7e-13 Score=113.43 Aligned_cols=75 Identities=27% Similarity=0.517 Sum_probs=67.2
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCeee
Q 010550 431 LSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVIG 503 (507)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~iG 503 (507)
|+|+|.+|+||+.. +.+||||++++++.+.+|++++++.||+|||.|.|.+.... ...|.|+|||+ .+++||
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~-~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA-DSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCC-CCEEEEEEEECCCCCCCcEeE
Confidence 89999999999763 46899999999999899999999999999999999998753 56899999998 578999
Q ss_pred eEe
Q 010550 504 ACG 506 (507)
Q Consensus 504 ~~~ 506 (507)
++.
T Consensus 81 ~~~ 83 (123)
T cd04025 81 KVV 83 (123)
T ss_pred EEE
Confidence 975
No 156
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.44 E-value=4e-13 Score=118.21 Aligned_cols=76 Identities=28% Similarity=0.425 Sum_probs=64.1
Q ss_pred EEEEEeeeecCCCC-CCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecC-----------C--CC-CceE
Q 010550 431 LSVLVQGAEDVEGE-NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDE-----------P--PL-HEKI 490 (507)
Q Consensus 431 L~V~v~~a~~L~~~-~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~-----------~--~~-~~~L 490 (507)
|.|+|++|+||+.. +.+||||++++.+ .+++|+++++|.||+|||.|.|.+.. + .. ...|
T Consensus 2 L~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L 81 (148)
T cd04010 2 LSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLEL 81 (148)
T ss_pred EEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEE
Confidence 88999999999873 5799999999976 46799999999999999999999951 1 11 2379
Q ss_pred EEEEEEC----CCCeeeeEe
Q 010550 491 HIEVMSK----RTGVIGACG 506 (507)
Q Consensus 491 ~v~V~d~----~~~~iG~~~ 506 (507)
.|+|||+ ++++||++.
T Consensus 82 ~i~V~d~~~~~~ddfLG~v~ 101 (148)
T cd04010 82 RVDLWHASMGGGDVFLGEVR 101 (148)
T ss_pred EEEEEcCCCCCCCceeEEEE
Confidence 9999988 678999985
No 157
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.44 E-value=5.3e-13 Score=115.12 Aligned_cols=76 Identities=28% Similarity=0.500 Sum_probs=66.6
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCC--CceEEEEEEEC-----CCC
Q 010550 431 LSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL--HEKIHIEVMSK-----RTG 500 (507)
Q Consensus 431 L~V~v~~a~~L~~---~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~--~~~L~v~V~d~-----~~~ 500 (507)
|+|+|++|+||+. .+.+||||++++++++++|++++++.||+|||.|.|.+..+.. ...|.++|||+ +++
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~ 81 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS 81 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence 8999999999975 3579999999999999999999999999999999999986522 24899999997 478
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
+||++.
T Consensus 82 ~lG~v~ 87 (127)
T cd04022 82 FLGRVR 87 (127)
T ss_pred eeeEEE
Confidence 999985
No 158
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.43 E-value=7.5e-13 Score=115.25 Aligned_cols=91 Identities=31% Similarity=0.518 Sum_probs=76.7
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcCe--
Q 010550 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGD-- 458 (507)
Q Consensus 384 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~-- 458 (507)
|+|.+.++|.+ ..+.|.|+|++|+||+.. +.+||||++++.+.
T Consensus 1 G~i~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~ 48 (134)
T cd00276 1 GELLLSLSYLP--------------------------------TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGK 48 (134)
T ss_pred CeEEEEEEeeC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCe
Confidence 78999999986 245699999999999863 57999999999653
Q ss_pred ---EEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 459 ---KKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 459 ---~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+++|++++++.||.|||+|.|.+..... ...|.|+|||. .+++||++.
T Consensus 49 ~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~ 104 (134)
T cd00276 49 KLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVV 104 (134)
T ss_pred EeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEE
Confidence 4599999999999999999999876532 35899999997 678999985
No 159
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.43 E-value=8.5e-13 Score=109.93 Aligned_cols=71 Identities=28% Similarity=0.543 Sum_probs=60.6
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC--------
Q 010550 431 LSVLVQGAEDVEGENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK-------- 497 (507)
Q Consensus 431 L~V~v~~a~~L~~~~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~-------- 497 (507)
|.|+|++|+||.+ .+||||++++++ .+.||+++++|+||+|||+|+|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~~--~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFKQ--SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCCC--CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEccccccccc
Confidence 5799999999975 599999999964 24699999999999999999999863 47999999995
Q ss_pred ---CCCeeeeEe
Q 010550 498 ---RTGVIGACG 506 (507)
Q Consensus 498 ---~~~~iG~~~ 506 (507)
.|+++|...
T Consensus 76 ~~~~d~~~G~g~ 87 (118)
T cd08686 76 GEGTDAIMGKGQ 87 (118)
T ss_pred ccCcccEEEEEE
Confidence 578887653
No 160
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.42 E-value=1.3e-12 Score=111.18 Aligned_cols=76 Identities=24% Similarity=0.526 Sum_probs=67.8
Q ss_pred eEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCe
Q 010550 429 GLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGV 501 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~ 501 (507)
|.|.|+|++|+||+.. +.+||||++++++...+|++++++.||.|||+|.|.+.+. .+.|.++|||+ ++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~--~~~l~~~v~d~~~~~~~~~ 78 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI--HDVLEVTVYDEDKDKKPEF 78 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc--CCEEEEEEEECCCCCCCce
Confidence 6799999999999863 4789999999999889999999999999999999998653 57899999998 6789
Q ss_pred eeeEe
Q 010550 502 IGACG 506 (507)
Q Consensus 502 iG~~~ 506 (507)
||++.
T Consensus 79 iG~~~ 83 (119)
T cd08377 79 LGKVA 83 (119)
T ss_pred eeEEE
Confidence 99985
No 161
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.41 E-value=1.9e-12 Score=111.30 Aligned_cols=76 Identities=28% Similarity=0.393 Sum_probs=64.8
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCeE-EEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCeee
Q 010550 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVIG 503 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~iG 503 (507)
..|+|+|.+|+||+.++.+||||++++++.+ .+|++ +++.||.|||.|.|.+..+ ..+.+.|.|+|+ ++++||
T Consensus 4 ~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~-~~~~l~v~v~d~~~~~~d~~iG 81 (126)
T cd08400 4 RSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPP-DVNSFTISLSNKAKRSKDSEIA 81 (126)
T ss_pred eEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCC-CcCEEEEEEEECCCCCCCCeEE
Confidence 3599999999999998889999999998855 58887 4689999999999987554 235799999997 688999
Q ss_pred eEe
Q 010550 504 ACG 506 (507)
Q Consensus 504 ~~~ 506 (507)
++.
T Consensus 82 ~v~ 84 (126)
T cd08400 82 EVT 84 (126)
T ss_pred EEE
Confidence 974
No 162
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.41 E-value=1.4e-12 Score=112.20 Aligned_cols=74 Identities=23% Similarity=0.417 Sum_probs=64.3
Q ss_pred EEEEEeeeecCCC-CCCCCcEEEEEEcC--eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCeee
Q 010550 431 LSVLVQGAEDVEG-ENHNNPYAIILYKG--DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVIG 503 (507)
Q Consensus 431 L~V~v~~a~~L~~-~~~~dPyv~v~~~~--~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~iG 503 (507)
|.|+|++|+||+. .+.+||||++++++ ++++|+++++|.||+|||.|.|.+... ++.|.|+|||+ ++++||
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN--SKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC--CCEEEEEEEECCCCCCCceEE
Confidence 5799999999975 35799999999974 567999999999999999999998643 56899999998 579999
Q ss_pred eEe
Q 010550 504 ACG 506 (507)
Q Consensus 504 ~~~ 506 (507)
++.
T Consensus 79 ~~~ 81 (126)
T cd08678 79 LAI 81 (126)
T ss_pred EEE
Confidence 985
No 163
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.40 E-value=1.9e-12 Score=110.46 Aligned_cols=74 Identities=20% Similarity=0.381 Sum_probs=64.6
Q ss_pred EEEEEeeeecCCCC----CCCCcEEEEEEcCe-EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCe
Q 010550 431 LSVLVQGAEDVEGE----NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGV 501 (507)
Q Consensus 431 L~V~v~~a~~L~~~----~~~dPyv~v~~~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~ 501 (507)
|.|+|.+|+||+.. +.+||||+++++++ ..||+++++|.||.|||+|.|.+.+. ...|.+.|||+ .+++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~--~~~l~~~v~d~~~~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT--FRHLSFYIYDRDVLRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC--CCEEEEEEEECCCCCCCce
Confidence 67899999999863 46899999999876 46999999999999999999999764 36899999998 6789
Q ss_pred eeeEe
Q 010550 502 IGACG 506 (507)
Q Consensus 502 iG~~~ 506 (507)
||++.
T Consensus 80 iG~~~ 84 (121)
T cd08401 80 IGKVA 84 (121)
T ss_pred EEEEE
Confidence 99874
No 164
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.40 E-value=1.1e-12 Score=111.67 Aligned_cols=75 Identities=27% Similarity=0.494 Sum_probs=65.3
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcC---eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---CCCe
Q 010550 431 LSVLVQGAEDVEGE---NHNNPYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGV 501 (507)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dPyv~v~~~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~ 501 (507)
|.|+|++|+||+.. +.+||||++++++ .+++|++++++.||+|||+|.|.+... ..+.|.|+|||+ ++++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~~~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDYVMDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCCCCCcc
Confidence 78999999999864 4799999999964 467999999999999999999999775 346899999998 5889
Q ss_pred eeeEe
Q 010550 502 IGACG 506 (507)
Q Consensus 502 iG~~~ 506 (507)
||++.
T Consensus 81 iG~~~ 85 (119)
T cd04036 81 LGTVL 85 (119)
T ss_pred cEEEE
Confidence 99985
No 165
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.40 E-value=2.9e-12 Score=111.16 Aligned_cols=78 Identities=31% Similarity=0.509 Sum_probs=67.0
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---
Q 010550 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK--- 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~---~~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~--- 497 (507)
+.|.|+|++|+||+. .+..||||++.+.+ ..++|++++++.||.|||+|.|.+...+....|.++|||+
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 459999999999985 35799999999963 4679999999999999999999988654456899999998
Q ss_pred -CCCeeeeEe
Q 010550 498 -RTGVIGACG 506 (507)
Q Consensus 498 -~~~~iG~~~ 506 (507)
.+++||++.
T Consensus 93 ~~~~~iG~~~ 102 (131)
T cd04026 93 TRNDFMGSLS 102 (131)
T ss_pred CCcceeEEEE
Confidence 678999975
No 166
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.39 E-value=2.5e-12 Score=112.12 Aligned_cols=77 Identities=18% Similarity=0.357 Sum_probs=65.4
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCC--------CCceEEEEEEEC-
Q 010550 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP--------LHEKIHIEVMSK- 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~--------~~~~L~v~V~d~- 497 (507)
.|+|+|++|++|+.. +.+||||++++++.+++|+++++|.||+|||.|.|.+...+ ....|.|+|||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 489999999999763 57999999999999999999999999999999999754321 124699999998
Q ss_pred ---CCCeeeeEe
Q 010550 498 ---RTGVIGACG 506 (507)
Q Consensus 498 ---~~~~iG~~~ 506 (507)
+|++||++.
T Consensus 82 ~~~~d~~iG~~~ 93 (135)
T cd04017 82 SVGKDEFLGRSV 93 (135)
T ss_pred CCCCCccceEEE
Confidence 578999985
No 167
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.39 E-value=2.8e-12 Score=109.24 Aligned_cols=76 Identities=30% Similarity=0.560 Sum_probs=66.9
Q ss_pred eEEEEEEeeeecCCCC---CCCCcEEEEEEcCe-EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCC
Q 010550 429 GLLSVLVQGAEDVEGE---NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTG 500 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~ 500 (507)
|+|.|+|++|+||+.. +.+||||+++++++ ..+|++++++.||.|||.|.|.+..+ ++.|.|+|||+ .++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEKVGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCCCCCCC
Confidence 6799999999999863 58999999999874 56999999999999999999998765 47999999998 678
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
+||++.
T Consensus 79 ~IG~~~ 84 (120)
T cd04045 79 SLGSVE 84 (120)
T ss_pred eeeEEE
Confidence 999985
No 168
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.38 E-value=3e-12 Score=113.03 Aligned_cols=80 Identities=21% Similarity=0.443 Sum_probs=69.1
Q ss_pred CCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-----------------------------EEEeeeecCCCCCcc
Q 010550 426 SGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-----------------------------KKRTKMIRKTRDPAW 473 (507)
Q Consensus 426 ~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~~~~~-----------------------------~~kT~v~~~t~nP~w 473 (507)
+..+.|.|+|++|+||.. .+.+||||++.+... .++|++++++.||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 468899999999999975 357999999998531 258999999999999
Q ss_pred cceEEEEecCCCCCceEEEEEEECCCCeeeeEe
Q 010550 474 NEEFQFMLDEPPLHEKIHIEVMSKRTGVIGACG 506 (507)
Q Consensus 474 nE~f~f~v~~~~~~~~L~v~V~d~~~~~iG~~~ 506 (507)
||.|.|.+... ..+.|.|+|||+++++||++.
T Consensus 105 nE~F~f~v~~~-~~~~L~i~V~D~dd~~IG~v~ 136 (153)
T cd08676 105 NETFRFEVEDV-SNDQLHLDIWDHDDDFLGCVN 136 (153)
T ss_pred ccEEEEEeccC-CCCEEEEEEEecCCCeEEEEE
Confidence 99999999765 357999999999899999985
No 169
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.38 E-value=3.2e-12 Score=110.20 Aligned_cols=76 Identities=26% Similarity=0.497 Sum_probs=66.3
Q ss_pred eEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC--------
Q 010550 429 GLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK-------- 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~-------- 497 (507)
+.|+|+|++|++|+.. +.+||||+++++++.++|++++++.||.|||.|.|.+..+ .+.|.|+|||+
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCccccc
Confidence 3589999999999863 4789999999998889999999999999999999998654 46899999997
Q ss_pred -------CCCeeeeEe
Q 010550 498 -------RTGVIGACG 506 (507)
Q Consensus 498 -------~~~~iG~~~ 506 (507)
.+++||++.
T Consensus 79 ~~~~~~~~~~~iG~~~ 94 (127)
T cd04027 79 KQKFTRESDDFLGQTI 94 (127)
T ss_pred ceeccccCCCcceEEE
Confidence 267999875
No 170
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.38 E-value=3e-12 Score=109.71 Aligned_cols=73 Identities=27% Similarity=0.564 Sum_probs=63.8
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEc-CeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----C--CC
Q 010550 431 LSVLVQGAEDVEGE---NHNNPYAIILYK-GDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----R--TG 500 (507)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dPyv~v~~~-~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~--~~ 500 (507)
|+|+|++|+||+.. +.+||||+++++ .+.++|++++++.||.|||.|.|.+.. ++.|.++|||+ + ++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKKFKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCCCCCCCCc
Confidence 78999999999864 479999999997 557799999999999999999999964 57999999998 2 47
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
+||++.
T Consensus 79 ~lG~~~ 84 (123)
T cd08382 79 FLGCVR 84 (123)
T ss_pred eEeEEE
Confidence 999874
No 171
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.38 E-value=3.2e-12 Score=109.59 Aligned_cols=76 Identities=25% Similarity=0.396 Sum_probs=65.9
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCeE--EEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCC
Q 010550 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDK--KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTG 500 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~--~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~ 500 (507)
+|+|+|++|++|+.. +.+||||+++++++. .||++++++.||.|||.|.|.+..+ .++.|.|+|||+ +++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCCCCCCc
Confidence 378999999999753 579999999998865 4888899999999999999998765 357899999998 679
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
+||++.
T Consensus 80 ~iG~~~ 85 (124)
T cd04037 80 LIGETV 85 (124)
T ss_pred eeEEEE
Confidence 999985
No 172
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.37 E-value=4.5e-12 Score=108.25 Aligned_cols=74 Identities=24% Similarity=0.485 Sum_probs=64.9
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcCeE-EEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCee
Q 010550 431 LSVLVQGAEDVEGE---NHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVI 502 (507)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~i 502 (507)
|+|+|.+|+||+.. +.+||||++.++++. .||++++++.||.|||.|.|.+... .+.|.++|||+ .+++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~--~~~l~v~v~d~~~~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG--FHTVSFYVLDEDTLSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC--CCEEEEEEEECCCCCCCCEE
Confidence 78999999999753 579999999998765 5999999999999999999998654 46899999998 67999
Q ss_pred eeEe
Q 010550 503 GACG 506 (507)
Q Consensus 503 G~~~ 506 (507)
|++.
T Consensus 80 G~~~ 83 (121)
T cd04054 80 GKVS 83 (121)
T ss_pred EEEE
Confidence 9974
No 173
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.37 E-value=3.8e-12 Score=109.21 Aligned_cols=76 Identities=26% Similarity=0.549 Sum_probs=67.2
Q ss_pred eEEEEEEeeeecCCCC----CCCCcEEEEEEcC--eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----C
Q 010550 429 GLLSVLVQGAEDVEGE----NHNNPYAIILYKG--DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----R 498 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~----~~~dPyv~v~~~~--~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~ 498 (507)
|.|.|+|++|+||+.. +.+||||++++++ +..+|++++++.||.|||.|.|.+.. .++.|.++|||+ +
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFNDKRK 79 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCCCCC
Confidence 6899999999999852 3589999999988 67899999999999999999999883 367999999998 6
Q ss_pred CCeeeeEe
Q 010550 499 TGVIGACG 506 (507)
Q Consensus 499 ~~~iG~~~ 506 (507)
+++||++.
T Consensus 80 d~~iG~~~ 87 (124)
T cd04044 80 DKLIGTAE 87 (124)
T ss_pred CceeEEEE
Confidence 78999975
No 174
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.37 E-value=4.1e-12 Score=113.50 Aligned_cols=77 Identities=25% Similarity=0.488 Sum_probs=66.3
Q ss_pred ceEEEEEEeeeecCCCC---------------------------------CCCCcEEEEEEcCeE-EEeeeecCCCCCcc
Q 010550 428 AGLLSVLVQGAEDVEGE---------------------------------NHNNPYAIILYKGDK-KRTKMIRKTRDPAW 473 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~---------------------------------~~~dPyv~v~~~~~~-~kT~v~~~t~nP~w 473 (507)
-|.|.|+|++|++|+.. +.+||||++.+++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 37899999999999742 347999999999866 49999999999999
Q ss_pred cceEEEEecCCCCCceEEEEEEEC---CCCeeeeEe
Q 010550 474 NEEFQFMLDEPPLHEKIHIEVMSK---RTGVIGACG 506 (507)
Q Consensus 474 nE~f~f~v~~~~~~~~L~v~V~d~---~~~~iG~~~ 506 (507)
||.|.|.+..+ .+.|.++|+|+ ++++||++.
T Consensus 86 nE~F~~~~~~~--~~~l~~~V~d~d~~~~~~IG~~~ 119 (158)
T cd04015 86 NESFHIYCAHY--ASHVEFTVKDNDVVGAQLIGRAY 119 (158)
T ss_pred ceEEEEEccCC--CCEEEEEEEeCCCcCCcEEEEEE
Confidence 99999998764 46899999998 678999874
No 175
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.37 E-value=7.2e-12 Score=107.38 Aligned_cols=92 Identities=22% Similarity=0.368 Sum_probs=74.7
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-- 457 (507)
.|+|++++.|.+ ..+.|.|+|.+|++|+.. +.+||||++++.+
T Consensus 1 ~G~~~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~ 48 (123)
T cd04035 1 LGTLEFTLLYDP--------------------------------ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGA 48 (123)
T ss_pred CcEEEEEEEEeC--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCC
Confidence 389999999987 245699999999999853 4789999999842
Q ss_pred ---eEEEeeeecCCCCCcccceEEEEecCC-C-CCceEEEEEEEC---CCCeeeeEe
Q 010550 458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEP-P-LHEKIHIEVMSK---RTGVIGACG 506 (507)
Q Consensus 458 ---~~~kT~v~~~t~nP~wnE~f~f~v~~~-~-~~~~L~v~V~d~---~~~~iG~~~ 506 (507)
.+++|++++++.||+|||.|.|..... . .+..|.++|||+ ++++||++.
T Consensus 49 ~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~ 105 (123)
T cd04035 49 SKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETR 105 (123)
T ss_pred CCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEE
Confidence 357999999999999999999963322 1 235899999998 578999875
No 176
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.36 E-value=6.3e-12 Score=109.15 Aligned_cols=77 Identities=23% Similarity=0.408 Sum_probs=66.5
Q ss_pred CceEEEEEEeeeecCCCC-------------CCCCcEEEEEEcCeE-EEeeeecCCCCCcccceEEEEecCCCCCceEEE
Q 010550 427 GAGLLSVLVQGAEDVEGE-------------NHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHI 492 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~-------------~~~dPyv~v~~~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v 492 (507)
.+|.|+|+|++|+||... +.+||||++.+++++ .+|+++++|.||.|||+|+|.+.+ ...|.|
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~ 78 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLEL 78 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEE
Confidence 368899999999999753 358999999999876 599999999999999999999963 368999
Q ss_pred EEEEC----CCCeeeeEe
Q 010550 493 EVMSK----RTGVIGACG 506 (507)
Q Consensus 493 ~V~d~----~~~~iG~~~ 506 (507)
+|+|+ .+++||++.
T Consensus 79 ~v~d~~~~~~~~~iG~~~ 96 (132)
T cd04014 79 TVFHDAAIGPDDFVANCT 96 (132)
T ss_pred EEEeCCCCCCCceEEEEE
Confidence 99997 578999874
No 177
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.35 E-value=7.2e-12 Score=107.54 Aligned_cols=78 Identities=29% Similarity=0.637 Sum_probs=68.0
Q ss_pred eEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecC-CCCCcccceEEEEecCCCC--CceEEEEEEEC----C
Q 010550 429 GLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPPL--HEKIHIEVMSK----R 498 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~-t~nP~wnE~f~f~v~~~~~--~~~L~v~V~d~----~ 498 (507)
|.|.|+|.+|+||+.. +.+||||+++++++.++|+++++ +.||.|||.|.|.+..+.. .+.|.|+|||+ .
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 5799999999999763 47999999999998889999875 9999999999999987632 45899999998 6
Q ss_pred CCeeeeEe
Q 010550 499 TGVIGACG 506 (507)
Q Consensus 499 ~~~iG~~~ 506 (507)
+++||++.
T Consensus 81 d~~iG~~~ 88 (124)
T cd04049 81 DDFIGEAT 88 (124)
T ss_pred CCeEEEEE
Confidence 88999985
No 178
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.35 E-value=8.9e-12 Score=106.73 Aligned_cols=94 Identities=33% Similarity=0.352 Sum_probs=80.0
Q ss_pred EEEEEEEeccccccC--cCC--CCCcEEEEEEcCccCCceeeeecCCCCC--CeEeeEEEEEeecC--------------
Q 010550 266 LHVKVVRASKLLKKD--FLG--TSDPYVKLSLTGEKLPWKKTTVKKKNLN--PEWNENFKLVVKEP-------------- 325 (507)
Q Consensus 266 L~V~v~~A~~L~~~d--~~g--~~dpyv~v~l~~~~~~~~~T~v~~~t~n--P~Wne~f~f~v~~~-------------- 325 (507)
|+|.|.+|++++..+ ..| .+||||+..+.+....+++|.++++++| |.||+.|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966433 356 4999999999886555679999999999 99999999887641
Q ss_pred ---------CCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCC
Q 010550 326 ---------ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359 (507)
Q Consensus 326 ---------~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~ 359 (507)
....|.++|||.|.+++|++||++.++|..+..+
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence 2468999999999999999999999999988765
No 179
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.34 E-value=7.1e-12 Score=108.99 Aligned_cols=75 Identities=31% Similarity=0.539 Sum_probs=64.9
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCe-------EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC--
Q 010550 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGD-------KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK-- 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~-------~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~-- 497 (507)
.|+|+|++|+||+.. +.+||||++++++. +++|+++++|.||.|||+|.|.+... ...|.++|||+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR--EHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC--CCEEEEEEEECCC
Confidence 389999999999864 47999999999764 46999999999999999999998653 46899999998
Q ss_pred --CCCeeeeEe
Q 010550 498 --RTGVIGACG 506 (507)
Q Consensus 498 --~~~~iG~~~ 506 (507)
.+++||++.
T Consensus 79 ~~~~~~iG~~~ 89 (133)
T cd04033 79 LTRDDFLGQVE 89 (133)
T ss_pred CCCCCeeEEEE
Confidence 679999975
No 180
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.32 E-value=3.6e-12 Score=101.13 Aligned_cols=75 Identities=33% Similarity=0.674 Sum_probs=66.4
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC---eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCC
Q 010550 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTG 500 (507)
Q Consensus 431 L~V~v~~a~~L~~---~~~~dPyv~v~~~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~ 500 (507)
|.|+|++|+||+. .+.+||||++++++ ..++|++++++.||.|||.|.|.+..++ .+.|.|+|||+ +++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPD-LDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGC-GTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeeccc-ccceEEEEEECCCCCCCC
Confidence 7899999999987 35899999999988 6789999999999999999999987764 45699999998 589
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
No 181
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.31 E-value=1e-11 Score=107.08 Aligned_cols=72 Identities=28% Similarity=0.573 Sum_probs=63.5
Q ss_pred EeeeecCCC-CCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCC-CCceEEEEEEEC----CCCeeeeEe
Q 010550 435 VQGAEDVEG-ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 435 v~~a~~L~~-~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~-~~~~L~v~V~d~----~~~~iG~~~ 506 (507)
|.+|+||+. .+.+||||++++++.+++|++++++.||+|||.|.|.+..+. ..+.|.++|||+ ++++||++.
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 678999987 467999999999999999999999999999999999997652 356999999998 678999985
No 182
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.30 E-value=2e-11 Score=99.70 Aligned_cols=95 Identities=45% Similarity=0.667 Sum_probs=81.8
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 345 (507)
|.|+|++|++|...+..+..+|||++++.+.....++|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 68999999999887765678999999998652223689999999999999999999987657899999999998777899
Q ss_pred eEEEEEECcccCCCC
Q 010550 346 LGMQLVPLKLLTPHE 360 (507)
Q Consensus 346 lG~~~i~l~~l~~~~ 360 (507)
+|.+.+++.++..+.
T Consensus 82 ~G~~~~~l~~~~~~~ 96 (101)
T smart00239 82 IGQVTIPLSDLLLGG 96 (101)
T ss_pred eEEEEEEHHHcccCc
Confidence 999999999987654
No 183
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.30 E-value=1.9e-11 Score=105.18 Aligned_cols=76 Identities=21% Similarity=0.438 Sum_probs=65.4
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCe---EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CC
Q 010550 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGD---KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RT 499 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~---~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~ 499 (507)
.|.|+|.+|+||+.. +.+||||++.+++. ..||++++++.||.|||+|.|.+... ....|.|+|||+ .+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCCCCCC
Confidence 588999999999863 57999999998653 46999999999999999999999875 346899999998 67
Q ss_pred CeeeeEe
Q 010550 500 GVIGACG 506 (507)
Q Consensus 500 ~~iG~~~ 506 (507)
++||++.
T Consensus 81 ~~iG~~~ 87 (126)
T cd04043 81 DLCGRAS 87 (126)
T ss_pred ceEEEEE
Confidence 8999975
No 184
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.30 E-value=4.5e-12 Score=123.91 Aligned_cols=77 Identities=29% Similarity=0.530 Sum_probs=67.4
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----
Q 010550 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---- 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~---~~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---- 497 (507)
.|.|+|.+|+||-. +|.+||||++.+-. .++||++++.++||+|||+|+|.+...+.+..|.|+|||+
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTs 260 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTS 260 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccc
Confidence 49999999999954 57899999999943 2569999999999999999999998776666999999998
Q ss_pred CCCeeeeEe
Q 010550 498 RTGVIGACG 506 (507)
Q Consensus 498 ~~~~iG~~~ 506 (507)
++++||+.+
T Consensus 261 RNDFMGslS 269 (683)
T KOG0696|consen 261 RNDFMGSLS 269 (683)
T ss_pred cccccceec
Confidence 889999864
No 185
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.29 E-value=1.3e-11 Score=107.63 Aligned_cols=76 Identities=28% Similarity=0.421 Sum_probs=65.9
Q ss_pred EEEEEeeeecCCCC--CCCCcEEEEEEc----CeEEEeeeecCCCCCcccceEEEEecCCC--------------CCceE
Q 010550 431 LSVLVQGAEDVEGE--NHNNPYAIILYK----GDKKRTKMIRKTRDPAWNEEFQFMLDEPP--------------LHEKI 490 (507)
Q Consensus 431 L~V~v~~a~~L~~~--~~~dPyv~v~~~----~~~~kT~v~~~t~nP~wnE~f~f~v~~~~--------------~~~~L 490 (507)
|+|+|++|+||+.+ +.+||||+++++ +..++|++++++.||.|||.|.|.+.... ....|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 57899999999854 689999999998 66789999999999999999999987752 23489
Q ss_pred EEEEEEC----CCCeeeeEe
Q 010550 491 HIEVMSK----RTGVIGACG 506 (507)
Q Consensus 491 ~v~V~d~----~~~~iG~~~ 506 (507)
.|+|||+ ++++||+++
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~ 100 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVR 100 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEE
Confidence 9999998 689999985
No 186
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.27 E-value=1.6e-11 Score=105.61 Aligned_cols=76 Identities=30% Similarity=0.496 Sum_probs=65.7
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcC-eEEEeeeec-CCCCCcccceEEEEecCCCC---CceEEEEEEEC----C
Q 010550 431 LSVLVQGAEDVEGE---NHNNPYAIILYKG-DKKRTKMIR-KTRDPAWNEEFQFMLDEPPL---HEKIHIEVMSK----R 498 (507)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dPyv~v~~~~-~~~kT~v~~-~t~nP~wnE~f~f~v~~~~~---~~~L~v~V~d~----~ 498 (507)
|+|+|++|++|+.. +.+||||++++++ ++++|++++ ++.||.|||.|.|.+..+.+ ...|.++|||+ .
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~ 81 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLG 81 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCC
Confidence 78999999999863 5799999999988 788999975 58999999999999987631 46899999998 5
Q ss_pred CCeeeeEe
Q 010550 499 TGVIGACG 506 (507)
Q Consensus 499 ~~~iG~~~ 506 (507)
+++||++.
T Consensus 82 ~~~lG~~~ 89 (125)
T cd04051 82 DKLIGEVR 89 (125)
T ss_pred CCcEEEEE
Confidence 78999985
No 187
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.26 E-value=8.9e-12 Score=145.18 Aligned_cols=80 Identities=24% Similarity=0.527 Sum_probs=73.2
Q ss_pred CceEEEEEEeeeecCCCC-CCCCcEEEEEEcCe-EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---CCCe
Q 010550 427 GAGLLSVLVQGAEDVEGE-NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGV 501 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~-~~~dPyv~v~~~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~ 501 (507)
-.|.|.|+|++|+||.++ +++||||++.++++ ++||++++++.||+|||.|+|.+.+|+.+++|+|+|||+ +++.
T Consensus 1978 ~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~ 2057 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSS 2057 (2102)
T ss_pred CCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCC
Confidence 468999999999999975 78999999999965 789999999999999999999999998778999999998 6779
Q ss_pred eeeEe
Q 010550 502 IGACG 506 (507)
Q Consensus 502 iG~~~ 506 (507)
||.+.
T Consensus 2058 ~G~~~ 2062 (2102)
T PLN03200 2058 LGKVT 2062 (2102)
T ss_pred CceEE
Confidence 99875
No 188
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.25 E-value=5.3e-11 Score=102.22 Aligned_cols=74 Identities=24% Similarity=0.491 Sum_probs=63.6
Q ss_pred EEEEEEeeeecCCC--CCCCCcEEEEEEcCe-EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCee
Q 010550 430 LLSVLVQGAEDVEG--ENHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVI 502 (507)
Q Consensus 430 ~L~V~v~~a~~L~~--~~~~dPyv~v~~~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~i 502 (507)
.|.|+|.+|+.+.. .+.+||||+++++++ .++|++++++.||+|||.|.|.+.. .+.|.|+|||+ .+++|
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCCCCCCcEE
Confidence 48999999984433 246999999999988 7899999999999999999999864 37899999998 67899
Q ss_pred eeEe
Q 010550 503 GACG 506 (507)
Q Consensus 503 G~~~ 506 (507)
|++.
T Consensus 80 G~~~ 83 (125)
T cd04021 80 GEAS 83 (125)
T ss_pred EEEE
Confidence 9975
No 189
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.25 E-value=5e-11 Score=103.47 Aligned_cols=74 Identities=24% Similarity=0.396 Sum_probs=62.5
Q ss_pred EEEEEEeeeecCCCC--CCCCcEEEEEEcC-------------eEEEeeeecCCCCCcc-cceEEEEecCCCCCceEEEE
Q 010550 430 LLSVLVQGAEDVEGE--NHNNPYAIILYKG-------------DKKRTKMIRKTRDPAW-NEEFQFMLDEPPLHEKIHIE 493 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~--~~~dPyv~v~~~~-------------~~~kT~v~~~t~nP~w-nE~f~f~v~~~~~~~~L~v~ 493 (507)
+..|++.+|+||+.. +.+||||++++.+ +++||+++++++||+| ||.|.|.+.. ++.|.++
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEEE
Confidence 367889999999742 5899999999952 3579999999999999 9999999853 4789999
Q ss_pred EEEC-C------CCeeeeEe
Q 010550 494 VMSK-R------TGVIGACG 506 (507)
Q Consensus 494 V~d~-~------~~~iG~~~ 506 (507)
|||+ . +++||++.
T Consensus 79 V~D~~~~~~~~~~d~lG~~~ 98 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLS 98 (137)
T ss_pred EEecCCCCCccCCceEEEEE
Confidence 9997 1 68999984
No 190
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.25 E-value=5.6e-11 Score=96.67 Aligned_cols=99 Identities=44% Similarity=0.646 Sum_probs=82.6
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 345 (507)
|.|++++|++|......+..+|||.+.+.+. ...+|+++.++.||.|||.|.|.+.......+.++||+.+..+.+++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~--~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK--QKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC--ceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 4789999999988666678999999999872 23689999999999999999999976456789999999998877899
Q ss_pred eEEEEEECcccC-CCCceEEEE
Q 010550 346 LGMQLVPLKLLT-PHETKEFTL 366 (507)
Q Consensus 346 lG~~~i~l~~l~-~~~~~~~~~ 366 (507)
+|.+.+++.++. .......|+
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~ 100 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWL 100 (102)
T ss_pred eEEEEEeHHHhhhcCCcCccee
Confidence 999999999998 444444444
No 191
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.24 E-value=5.1e-11 Score=101.05 Aligned_cols=75 Identities=27% Similarity=0.432 Sum_probs=63.0
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEcCeE-EEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeee
Q 010550 431 LSVLVQGAEDVEGENHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGA 504 (507)
Q Consensus 431 L~V~v~~a~~L~~~~~~dPyv~v~~~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~ 504 (507)
|.|+|++|+||+..+.+||||++++++++ ++|+++++ .||.|||+|.|.+...... ..|.+.+||+ ++..+|.
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~ 80 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGK 80 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEE
Confidence 78999999999987889999999999864 69999999 9999999999999775322 3788888987 4567777
Q ss_pred Ee
Q 010550 505 CG 506 (507)
Q Consensus 505 ~~ 506 (507)
+.
T Consensus 81 v~ 82 (117)
T cd08383 81 VA 82 (117)
T ss_pred EE
Confidence 64
No 192
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.23 E-value=5.5e-11 Score=100.58 Aligned_cols=75 Identities=27% Similarity=0.519 Sum_probs=64.8
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcCe-EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCee
Q 010550 431 LSVLVQGAEDVEGE---NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVI 502 (507)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dPyv~v~~~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~i 502 (507)
|+|+|++|++|+.. +.+||||+++++++ .++|+++.++.||.|||.|.|.+... ..+.+.++|||+ .+++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCCCCCCCce
Confidence 57899999999863 47899999999765 46999999999999999999999865 356899999998 67899
Q ss_pred eeEe
Q 010550 503 GACG 506 (507)
Q Consensus 503 G~~~ 506 (507)
|++.
T Consensus 80 G~~~ 83 (115)
T cd04040 80 GSAY 83 (115)
T ss_pred EEEE
Confidence 9985
No 193
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.23 E-value=6.2e-11 Score=104.54 Aligned_cols=76 Identities=16% Similarity=0.348 Sum_probs=59.5
Q ss_pred EEEEEeeeec--CCC---CCCCCcEEEEEE--c---CeEEEeeeecCCCCCcccceEEEEecCCC-------CCceEEEE
Q 010550 431 LSVLVQGAED--VEG---ENHNNPYAIILY--K---GDKKRTKMIRKTRDPAWNEEFQFMLDEPP-------LHEKIHIE 493 (507)
Q Consensus 431 L~V~v~~a~~--L~~---~~~~dPyv~v~~--~---~~~~kT~v~~~t~nP~wnE~f~f~v~~~~-------~~~~L~v~ 493 (507)
..++|..|++ |+. .+.+||||++++ . .++.||+++++|+||+|||.|.|.+.... ....|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3456666766 554 357999999997 2 24679999999999999999999996541 12479999
Q ss_pred EEEC-----CCCeeeeEe
Q 010550 494 VMSK-----RTGVIGACG 506 (507)
Q Consensus 494 V~d~-----~~~~iG~~~ 506 (507)
|||+ +|++||++.
T Consensus 84 V~d~~~f~~~D~~iG~~~ 101 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQ 101 (155)
T ss_pred EEeCCCcccCCCeeEEEE
Confidence 9998 479999984
No 194
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=5.8e-11 Score=122.15 Aligned_cols=97 Identities=39% Similarity=0.542 Sum_probs=84.4
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEee--cCCCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVK--EPESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~--~~~~~~L~v~V 334 (507)
+..+.|.|+|.|++|++|...+..+.+||||++++... +..+++|.+++++.||+|||+|.|.+. ......+.++|
T Consensus 293 Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V 372 (421)
T KOG1028|consen 293 YLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTV 372 (421)
T ss_pred eecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEE
Confidence 44567999999999999999999999999999998543 455689999999999999999999886 33356799999
Q ss_pred EEcCCCCCCCeeEEEEEECcc
Q 010550 335 FDWDKVGGHDRLGMQLVPLKL 355 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~ 355 (507)
||+|.++++++||++.+....
T Consensus 373 ~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 373 WDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEcccccccceeeEEEecCCC
Confidence 999999999999999887765
No 195
>PLN02270 phospholipase D alpha
Probab=99.18 E-value=2.3e-10 Score=122.62 Aligned_cols=130 Identities=22% Similarity=0.363 Sum_probs=105.7
Q ss_pred ceEEEEEEEEEeccccccC------------------cCCCCCcEEEEEEcCccCCceeeeecCCC-CCCeEeeEEEEEe
Q 010550 262 PVGILHVKVVRASKLLKKD------------------FLGTSDPYVKLSLTGEKLPWKKTTVKKKN-LNPEWNENFKLVV 322 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d------------------~~g~~dpyv~v~l~~~~~~~~~T~v~~~t-~nP~Wne~f~f~v 322 (507)
-.|.|.|+|.+|++|++.+ ..+.+||||++.+++.++ .||+++.+. .||.|+|+|.+.+
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v--~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV--GRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE--EEEeecCCCCCCCccccceEEee
Confidence 3599999999999998631 125689999999998765 699999874 6999999999999
Q ss_pred ecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCCc
Q 010550 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDS 399 (507)
Q Consensus 323 ~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~~ 399 (507)
.... ..+.|.|.|.|.++. .+||.+.+|+.++..++..+.|+++...- .+..+....|+++++|+|...+.
T Consensus 84 ah~~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~----~~p~~~~~~~~~~~~f~~~~~~~ 154 (808)
T PLN02270 84 AHMA-SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDND----KNPIHGGSKIHVKLQYFEVTKDR 154 (808)
T ss_pred ccCc-ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCC----CCcCCCCCEEEEEEEEEEcccCc
Confidence 8754 689999999998865 59999999999999998888899886431 11223345999999999987653
No 196
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.14 E-value=3e-10 Score=91.34 Aligned_cols=85 Identities=22% Similarity=0.422 Sum_probs=73.2
Q ss_pred HHHHHhhch-hHH-HHHHHHHHHHHHHHHhh-ccCCceeeeEEEeEeeCCCCCCeEeeEEEEec-CCCeEEEeeeeeEeC
Q 010550 78 NRFLSDMWP-YLD-KAICANVRTTAQPIFDE-YSGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEPALRWAG 153 (507)
Q Consensus 78 N~~l~~~Wp-~~~-~~~~~~i~~~~~~~l~~-~~p~~~l~~i~~~~~~lG~~~P~i~~ir~~~~-~~~~~~le~~~~~~~ 153 (507)
|.+++|++- +++ +++.+.+++.++..|++ .+|+| ++++++++++||+.||.|+++|+.+. .++++.+|+++.|.|
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~f-l~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G 79 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSF-LDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG 79 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCc-cCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC
Confidence 667777754 444 68899999999999998 56998 99999999999999999999999874 455699999999999
Q ss_pred CCcEEEEEEE
Q 010550 154 NPNIVLVLKL 163 (507)
Q Consensus 154 ~~~i~l~~~~ 163 (507)
+..+.+++++
T Consensus 80 ~~~l~l~t~l 89 (91)
T PF10296_consen 80 GFSLTLETKL 89 (91)
T ss_pred CeEEEEEEEE
Confidence 9999988765
No 197
>PLN02223 phosphoinositide phospholipase C
Probab=99.14 E-value=2.7e-10 Score=117.45 Aligned_cols=98 Identities=27% Similarity=0.457 Sum_probs=82.3
Q ss_pred eEEEEEEEEEecccccc-----CcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEE
Q 010550 263 VGILHVKVVRASKLLKK-----DFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF 335 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~-----d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~ 335 (507)
...|.|+|+.|++++.. +.....||||+|.+.|-. ...++|++..++.||.|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46799999999987511 223457999999997532 23467888889999999999999999998889999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCC
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHE 360 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~ 360 (507)
|+|..++|+|+|++.+|+..|..+-
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy 512 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI 512 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc
Confidence 9998888999999999999999874
No 198
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.12 E-value=2.8e-10 Score=95.43 Aligned_cols=72 Identities=24% Similarity=0.449 Sum_probs=57.7
Q ss_pred EEeeeecCCCC---CCCCcEEEEEEcCe------EEEeeeecCCCCCcccceEEEEecCCC---CCceEEEEEEEC----
Q 010550 434 LVQGAEDVEGE---NHNNPYAIILYKGD------KKRTKMIRKTRDPAWNEEFQFMLDEPP---LHEKIHIEVMSK---- 497 (507)
Q Consensus 434 ~v~~a~~L~~~---~~~dPyv~v~~~~~------~~kT~v~~~t~nP~wnE~f~f~v~~~~---~~~~L~v~V~d~---- 497 (507)
..++|++|+.. +.+||||++++.+. .++|++++++.||+|| +|.|.+...+ ....|.|+|||+
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 34589999864 47999999998653 4699999999999999 6888764322 246899999998
Q ss_pred CCCeeeeEe
Q 010550 498 RTGVIGACG 506 (507)
Q Consensus 498 ~~~~iG~~~ 506 (507)
++++||++.
T Consensus 84 ~d~~iG~~~ 92 (110)
T cd04047 84 KHDLIGEFE 92 (110)
T ss_pred CCcEEEEEE
Confidence 679999985
No 199
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.12 E-value=4.6e-10 Score=96.77 Aligned_cols=76 Identities=20% Similarity=0.431 Sum_probs=63.8
Q ss_pred EEEEEEeeeecCCC-----CCCCCcEEEEEEc------CeEEEeeeecCCC-CCcccceEEEEecCCCCCceEEEEEEEC
Q 010550 430 LLSVLVQGAEDVEG-----ENHNNPYAIILYK------GDKKRTKMIRKTR-DPAWNEEFQFMLDEPPLHEKIHIEVMSK 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~-----~~~~dPyv~v~~~------~~~~kT~v~~~t~-nP~wnE~f~f~v~~~~~~~~L~v~V~d~ 497 (507)
.|+|+|++|+||+. .+..||||++++. ..+++|++++++. ||.|||+|.|.+..+. ...|.++|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~-~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE-LAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC-eEEEEEEEEeC
Confidence 58999999999974 3478999999994 3457999988876 9999999999998653 35799999998
Q ss_pred ---CCCeeeeEe
Q 010550 498 ---RTGVIGACG 506 (507)
Q Consensus 498 ---~~~~iG~~~ 506 (507)
++++||++.
T Consensus 82 ~~~~~~~iG~~~ 93 (128)
T cd00275 82 DSGDDDFLGQAC 93 (128)
T ss_pred CCCCCcEeEEEE
Confidence 479999874
No 200
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.11 E-value=2.8e-10 Score=97.01 Aligned_cols=71 Identities=15% Similarity=0.309 Sum_probs=58.5
Q ss_pred EeeeecCCCC---CCCCcEEEEEEcCeE-------EEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC-------
Q 010550 435 VQGAEDVEGE---NHNNPYAIILYKGDK-------KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK------- 497 (507)
Q Consensus 435 v~~a~~L~~~---~~~dPyv~v~~~~~~-------~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~------- 497 (507)
.++|++|+.. +.+||||++++.+.. ++|++++++.||+|||.|.|.+... ..+.|.++|||+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~-~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE-EVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeE-eeeEEEEEEEEecCCcCCC
Confidence 3688999763 579999999997653 6999999999999999999987643 346899999985
Q ss_pred -CCCeeeeEe
Q 010550 498 -RTGVIGACG 506 (507)
Q Consensus 498 -~~~~iG~~~ 506 (507)
++++||++.
T Consensus 85 ~~~d~iG~~~ 94 (120)
T cd04048 85 SDHDFLGEAE 94 (120)
T ss_pred CCCcEEEEEE
Confidence 458999985
No 201
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.08 E-value=8.1e-10 Score=96.46 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=62.6
Q ss_pred EEEEEEeeeecCCCCCCCCcEEEEEEcCeEE-EeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC--------CCC
Q 010550 430 LLSVLVQGAEDVEGENHNNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK--------RTG 500 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~-kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~--------~~~ 500 (507)
-|.|.|.+|++|+.+ .+|||.+.+++.+. +|+++.++.||.|+|.|.|.+..+ -..|.|.|+.. +++
T Consensus 12 sL~v~V~EAk~Lp~~--~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~--~~~l~v~v~k~~~~~~~~~~~~ 87 (146)
T cd04013 12 SLKLWIIEAKGLPPK--KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP--VSVITVNLYRESDKKKKKDKSQ 87 (146)
T ss_pred EEEEEEEEccCCCCc--CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc--ccEEEEEEEEccCccccccCCc
Confidence 499999999999986 48999999999986 999999999999999999976554 36799999744 357
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
+||.+.
T Consensus 88 ~IG~V~ 93 (146)
T cd04013 88 LIGTVN 93 (146)
T ss_pred EEEEEE
Confidence 999874
No 202
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.07 E-value=6.6e-10 Score=93.33 Aligned_cols=61 Identities=23% Similarity=0.521 Sum_probs=53.6
Q ss_pred CCCCcEEEEEEcCe-EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---CCCeeeeEe
Q 010550 445 NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGVIGACG 506 (507)
Q Consensus 445 ~~~dPyv~v~~~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~iG~~~ 506 (507)
|.+||||+++++++ .++|++++++.||+|||.|.|.+.++ ..+.|.|+|+|+ ++++||++.
T Consensus 11 G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~d~~iG~~~ 75 (111)
T cd04052 11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRDRHDPVLGSVS 75 (111)
T ss_pred CCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCCCCCCeEEEEE
Confidence 57999999999886 46999999999999999999999875 357899999999 479999974
No 203
>PLN02952 phosphoinositide phospholipase C
Probab=99.06 E-value=2e-09 Score=113.48 Aligned_cols=104 Identities=28% Similarity=0.394 Sum_probs=84.3
Q ss_pred eEEEEEEEEEecccccc------CcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEE
Q 010550 263 VGILHVKVVRASKLLKK------DFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~------d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V 334 (507)
...|.|+|+.|++++.. +.....||||++.+-+- ...+++|+++.++.||.|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987531 11233599999998652 22346899999999999999999999988878899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
||+|..+.++++|++.+|+..|..+-. +++|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~ 580 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGIR---SVPLH 580 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCce---eEeCc
Confidence 999988889999999999999998852 55553
No 204
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.03 E-value=8.8e-11 Score=121.08 Aligned_cols=133 Identities=29% Similarity=0.521 Sum_probs=104.0
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc-------------------------cCC---ceeeeecCCCC
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-------------------------KLP---WKKTTVKKKNL 310 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~-------------------------~~~---~~~T~v~~~t~ 310 (507)
.+.|.-.+.|.+.+|+||.++|.+|.||||+.+.+.+. ..+ -+-|.++++|+
T Consensus 109 ~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TL 188 (1103)
T KOG1328|consen 109 NKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTL 188 (1103)
T ss_pred CCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccC
Confidence 44556667888999999999999999999999887321 011 13588999999
Q ss_pred CCeEeeEEEEEeecCCCCeEEEEEEEcCCC---------------------------------C---CCCeeEEEEEECc
Q 010550 311 NPEWNENFKLVVKEPESQILQLQVFDWDKV---------------------------------G---GHDRLGMQLVPLK 354 (507)
Q Consensus 311 nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~---------------------------------~---~d~~lG~~~i~l~ 354 (507)
||+|+|.|.|.+.+..+..+++.+||+|.- + .|||+|...||++
T Consensus 189 nPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~ 268 (1103)
T KOG1328|consen 189 NPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLA 268 (1103)
T ss_pred CcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 999999999999999999999999999843 1 2789999999999
Q ss_pred ccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccC
Q 010550 355 LLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (507)
Q Consensus 355 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~ 397 (507)
++... +.+.|+.|..+.+ .++.+|.+++.+......+
T Consensus 269 EiP~~-Gld~WFkLepRS~-----~S~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 269 EIPPD-GLDQWFKLEPRSD-----KSKVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred cCCcc-hHHHHhccCcccc-----cccccceEEEEEEEeeecc
Confidence 99865 3455665544322 3678999999997765543
No 205
>PLN03008 Phospholipase D delta
Probab=98.97 E-value=1.9e-09 Score=115.85 Aligned_cols=60 Identities=20% Similarity=0.571 Sum_probs=53.2
Q ss_pred CCCCcEEEEEEcCeEE-EeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---CCCeeeeEe
Q 010550 445 NHNNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGVIGACG 506 (507)
Q Consensus 445 ~~~dPyv~v~~~~~~~-kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~iG~~~ 506 (507)
+.+||||+|.+++++. ||++++++.||+|||+|.|.|.++ ...|.++|+|+ ++++||++.
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~~gaD~IG~a~ 138 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDVFGAQIIGTAK 138 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCccCCceeEEEE
Confidence 3679999999988654 999999999999999999999986 46899999998 779999874
No 206
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.94 E-value=3.4e-09 Score=111.58 Aligned_cols=98 Identities=23% Similarity=0.356 Sum_probs=81.6
Q ss_pred eEEEEEEEEEecccccc------CcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEE
Q 010550 263 VGILHVKVVRASKLLKK------DFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~------d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V 334 (507)
..+|.|+|+.+++++.. +.....||||++.+-+-. ..+++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46899999999987421 122347999999986521 2346888999999999999999999988888999999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCC
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHE 360 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~ 360 (507)
+|+|...+|+|+|++.+|+..|..+-
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~Gy 573 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGI 573 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCcc
Confidence 99998889999999999999999873
No 207
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.92 E-value=1.2e-08 Score=83.09 Aligned_cols=75 Identities=35% Similarity=0.678 Sum_probs=65.6
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcCe---EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCC
Q 010550 431 LSVLVQGAEDVEGE---NHNNPYAIILYKGD---KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTG 500 (507)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dPyv~v~~~~~---~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~ 500 (507)
+.+.|++|++|... +..+|||++++.+. ..+|+++.++.||.|||.|.|.+..+. ...|.|+|||+ ++.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDRFGRDD 80 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCCccCCc
Confidence 67899999999864 36999999999875 689999999999999999999998864 57999999998 378
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
++|.+.
T Consensus 81 ~~G~~~ 86 (101)
T smart00239 81 FIGQVT 86 (101)
T ss_pred eeEEEE
Confidence 999875
No 208
>PLN02228 Phosphoinositide phospholipase C
Probab=98.90 E-value=2.5e-08 Score=104.71 Aligned_cols=123 Identities=22% Similarity=0.327 Sum_probs=92.6
Q ss_pred EEEEEEEEEeccccc---c---CcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeE-eeEEEEEeecCCCCeEEEEE
Q 010550 264 GILHVKVVRASKLLK---K---DFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEW-NENFKLVVKEPESQILQLQV 334 (507)
Q Consensus 264 g~L~V~v~~A~~L~~---~---d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~L~v~V 334 (507)
..|+|+|++|++|+. . +.....||||++.+.+- ...+++|++++++.||.| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 1 11234799999998653 223468999998999999 99999999988888999999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
+|+|..+.|+++|++.+|+..|..+-. ..+|... ....-...+|.+++.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~-----~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDR-----AGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCC-----CCCCCCCeEEEEEEEEcC
Confidence 999988889999999999999987732 2334221 111223467888887776
No 209
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.88 E-value=8.6e-09 Score=88.38 Aligned_cols=76 Identities=25% Similarity=0.370 Sum_probs=63.3
Q ss_pred EEEEEeeeecCCC-----CC--CCCcEEEEEEcC---eEEEeeeecCCCC--CcccceEEEEecCCCC------------
Q 010550 431 LSVLVQGAEDVEG-----EN--HNNPYAIILYKG---DKKRTKMIRKTRD--PAWNEEFQFMLDEPPL------------ 486 (507)
Q Consensus 431 L~V~v~~a~~L~~-----~~--~~dPyv~v~~~~---~~~kT~v~~~t~n--P~wnE~f~f~v~~~~~------------ 486 (507)
|+|.|.+|+|++. .+ .+||||++.+.+ ++++|.+.++++| |.||+.|.|.+..++.
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 8999999999653 23 499999999976 4579999999999 9999999999876432
Q ss_pred ----------CceEEEEEEEC----CCCeeeeEe
Q 010550 487 ----------HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 487 ----------~~~L~v~V~d~----~~~~iG~~~ 506 (507)
...|.++|||. .|++||+++
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~ 115 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLE 115 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEE
Confidence 23899999998 789999985
No 210
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.88 E-value=9.9e-09 Score=107.94 Aligned_cols=98 Identities=24% Similarity=0.374 Sum_probs=80.8
Q ss_pred eEEEEEEEEEecccc----cc--CcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEE
Q 010550 263 VGILHVKVVRASKLL----KK--DFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~----~~--d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V 334 (507)
...|.|+|+.+++++ .. +.....||||++.+.+- ...+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 457999999998753 11 12235799999999642 22346899999999999999999999988888999999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCC
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHE 360 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~ 360 (507)
||+|..+.|+++|++.+|+..|..+-
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy 556 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGI 556 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCcc
Confidence 99998888999999999999999873
No 211
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.87 E-value=1.3e-08 Score=107.12 Aligned_cols=96 Identities=29% Similarity=0.518 Sum_probs=81.1
Q ss_pred EEEEEEEEeccccccC----cCCCCCcEEEEEEcCcc--CCceeee-ecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 010550 265 ILHVKVVRASKLLKKD----FLGTSDPYVKLSLTGEK--LPWKKTT-VKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d----~~g~~dpyv~v~l~~~~--~~~~~T~-v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~ 337 (507)
+|.|+|+.++++.... ....+||||.+.+-|-. ....+|+ +..++-||.|+|+|+|.+..|+-..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999765432 12458999999986532 2345788 667899999999999999999989999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCC
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPHE 360 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~~ 360 (507)
|..++|||+|+..+|+..|..+-
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~Gy 719 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGY 719 (746)
T ss_pred CCCCcccccceeeccHHHhhCce
Confidence 99999999999999999999874
No 212
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.87 E-value=6.6e-09 Score=83.64 Aligned_cols=86 Identities=19% Similarity=0.338 Sum_probs=71.0
Q ss_pred EEEEEEEeccccccC---cCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 010550 266 LHVKVVRASKLLKKD---FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (507)
Q Consensus 266 L~V~v~~A~~L~~~d---~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~ 342 (507)
|.|+|.+|+++...+ ..+.+||||.+.+++.. +.||++ +.||.|||+|.|.+. ....+.+.|||... ..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~--kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~-~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVE--RARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGG-DQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEE--EEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCC-Ce
Confidence 679999999998877 56889999999999764 256765 589999999999994 46789999999863 34
Q ss_pred CCeeEEEEEECcccCCC
Q 010550 343 HDRLGMQLVPLKLLTPH 359 (507)
Q Consensus 343 d~~lG~~~i~l~~l~~~ 359 (507)
.-.+|..-+.++++.+.
T Consensus 73 ~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 73 PVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ecceeeehhhHHHHHHH
Confidence 55799999999988754
No 213
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=3.5e-09 Score=108.08 Aligned_cols=80 Identities=21% Similarity=0.454 Sum_probs=71.2
Q ss_pred cCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---
Q 010550 424 ALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK--- 497 (507)
Q Consensus 424 ~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~--- 497 (507)
.+.-++.+.++|.+|++|.++ |.+||||.+.++..+++|+++...+||+|||.|.|.+.+. .+.|.+.|||.
T Consensus 290 sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns--tdrikvrvwded~d 367 (1283)
T KOG1011|consen 290 SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS--TDRIKVRVWDEDND 367 (1283)
T ss_pred ccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC--CceeEEEEecCccc
Confidence 444677899999999999764 6899999999999999999999999999999999999886 58999999997
Q ss_pred ------------CCCeeeeE
Q 010550 498 ------------RTGVIGAC 505 (507)
Q Consensus 498 ------------~~~~iG~~ 505 (507)
+|+|+|+.
T Consensus 368 lksklrqkl~resddflgqt 387 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQT 387 (1283)
T ss_pred HHHHHHHHhhhcccccccce
Confidence 67888874
No 214
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.81 E-value=3.8e-08 Score=79.73 Aligned_cols=75 Identities=29% Similarity=0.602 Sum_probs=64.9
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC-eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCee
Q 010550 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG-DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVI 502 (507)
Q Consensus 431 L~V~v~~a~~L~~---~~~~dPyv~v~~~~-~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~i 502 (507)
|.|.|++|++|.. .+..||||.+++.+ ...+|+++.++.||.|||.|.|.+... ....|.++|+|+ .+++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDRFSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCCCCCCcee
Confidence 4689999999975 35799999999998 778999999999999999999999874 357899999998 36899
Q ss_pred eeEe
Q 010550 503 GACG 506 (507)
Q Consensus 503 G~~~ 506 (507)
|++.
T Consensus 80 g~~~ 83 (102)
T cd00030 80 GEVE 83 (102)
T ss_pred EEEE
Confidence 9874
No 215
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.80 E-value=2.8e-09 Score=110.28 Aligned_cols=100 Identities=29% Similarity=0.442 Sum_probs=86.7
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc----CCceeeeecCCCCCCeEeeEEEEEeecC----CCCeE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQIL 330 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~~L 330 (507)
.......|.|.|+.|+++.+-|.+|.|||||+|.+.+.. ....+|+|+..|+||+|+|+|+|.|... +...+
T Consensus 942 y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~ 1021 (1103)
T KOG1328|consen 942 YNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAML 1021 (1103)
T ss_pred eeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceE
Confidence 444556788999999999999999999999999998753 2356899999999999999999999732 25689
Q ss_pred EEEEEEcCCCCCCCeeEEEEEECcccCC
Q 010550 331 QLQVFDWDKVGGHDRLGMQLVPLKLLTP 358 (507)
Q Consensus 331 ~v~V~d~~~~~~d~~lG~~~i~l~~l~~ 358 (507)
.|+|+|+|-.+.+||-|++.+.|.++..
T Consensus 1022 ~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1022 HFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EEEeeccceecccccchHHHHhhCCCCC
Confidence 9999999999999999999999998863
No 216
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.71 E-value=7.9e-08 Score=77.47 Aligned_cols=61 Identities=26% Similarity=0.509 Sum_probs=52.4
Q ss_pred EEEEEeeeecCCC------CCCCCcEEEEEEcCe-EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC
Q 010550 431 LSVLVQGAEDVEG------ENHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK 497 (507)
Q Consensus 431 L~V~v~~a~~L~~------~~~~dPyv~v~~~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~ 497 (507)
|.|+|++|+|+.. .+.+||||.+.+++. +.+|++ +.||.|||.|.|.+.. ...+.+.|||+
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk---~nEiel~VyDk 68 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK---NNEEEVIVYDK 68 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC---CcEEEEEEEeC
Confidence 5789999999964 257899999999998 558887 4999999999999953 47899999999
No 217
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.71 E-value=1.7e-07 Score=96.15 Aligned_cols=166 Identities=21% Similarity=0.303 Sum_probs=115.8
Q ss_pred eeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC----CCCCeeEEEEEECcccCCCCceEEEEeccccccCCC
Q 010550 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV----GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376 (507)
Q Consensus 301 ~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~----~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~ 376 (507)
.+|.++.+.+||.|.+.|.+...-...|.++++++|.+.. ...+|+|++...+..+.........+.+..
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~------ 116 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP------ 116 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc------
Confidence 4889999999999999998887766789999999998743 456899999999998876533322222111
Q ss_pred CCCCccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEE
Q 010550 377 PKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAII 453 (507)
Q Consensus 377 ~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v 453 (507)
......|+|.+.+.-... .-....-.++|++|..+ ..+|||..+
T Consensus 117 -~~~~~~g~iti~aee~~~--------------------------------~~~~~~~~~~~~~ld~kd~f~ksd~~l~~ 163 (529)
T KOG1327|consen 117 -GKNAGSGTITISAEEDES--------------------------------DNDVVQFSFRAKNLDPKDFFSKSDPYLEF 163 (529)
T ss_pred -CccCCcccEEEEeecccc--------------------------------cCceeeeeeeeeecCcccccccCCcceEE
Confidence 123456777777621110 00122233468888875 479999998
Q ss_pred EEc--Ce----EEEeeeecCCCCCcccceEEEEecCCCC---CceEEEEEEEC----CCCeeeeEe
Q 010550 454 LYK--GD----KKRTKMIRKTRDPAWNEEFQFMLDEPPL---HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 454 ~~~--~~----~~kT~v~~~t~nP~wnE~f~f~v~~~~~---~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+-. .. .++|.++++++||.|.+ |.......+. +.++.+++||. ++++||+++
T Consensus 164 ~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~ 228 (529)
T KOG1327|consen 164 YKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQ 228 (529)
T ss_pred EEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEec
Confidence 864 22 24999999999999988 5544443322 34899999998 558999985
No 218
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.71 E-value=5.2e-08 Score=102.15 Aligned_cols=127 Identities=25% Similarity=0.384 Sum_probs=95.9
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCccC---CceeeeecCCCCCCeEe-eEEEEEeecCCCCeEEEEEEEcCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL---PWKKTTVKKKNLNPEWN-ENFKLVVKEPESQILQLQVFDWDK 339 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~---~~~~T~v~~~t~nP~Wn-e~f~f~v~~~~~~~L~v~V~d~~~ 339 (507)
-.|.|.|+.|++|+... .|...|||.|.+-|..+ ..++|.+..+++||+|| |.|+|.+.+|+-..|+|.|||.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 46889999999999543 35567999999866432 23567788899999999 999999999999999999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCCc
Q 010550 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDS 399 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~~ 399 (507)
++...|||++.+|+..+..+- ...+|..... ..-.-..+.+.+...|..+.+
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~yS-----EdlELaSLLv~i~m~~~~~~~ 1195 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF---RSVPLKNGYS-----EDLELASLLVFIEMRPVLESE 1195 (1267)
T ss_pred cCCcceeeeeecchhhhhccc---eeeecccCch-----hhhhhhhheeeeEeccccCcc
Confidence 998889999999999998662 1222211100 112345677888888876553
No 219
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.68 E-value=3.4e-08 Score=102.56 Aligned_cols=124 Identities=27% Similarity=0.369 Sum_probs=95.3
Q ss_pred EEEeccccccCcCCCCCcEEEEEEcCc-cCCceeeeecCCCCCCeEeeEEEEEeecC---------------CCCeEEEE
Q 010550 270 VVRASKLLKKDFLGTSDPYVKLSLTGE-KLPWKKTTVKKKNLNPEWNENFKLVVKEP---------------ESQILQLQ 333 (507)
Q Consensus 270 v~~A~~L~~~d~~g~~dpyv~v~l~~~-~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------------~~~~L~v~ 333 (507)
+++++++-+.+ ++.+|||+++...+. +...++|+++++|.+|.|+|.|+|.+... ..-.++++
T Consensus 137 ~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~ 215 (800)
T KOG2059|consen 137 VLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVD 215 (800)
T ss_pred hhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEe
Confidence 34444554443 566999999998654 33346899999999999999999998754 24478899
Q ss_pred EEE-cCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 334 VFD-WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 334 V~d-~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
+|+ .+....++|+|++.+++..+........|+.|...-+.++...+..-|.+++.++|..
T Consensus 216 lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 216 LWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred eccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 999 5555668999999999999987667778888877655555555667899999999874
No 220
>PLN02352 phospholipase D epsilon
Probab=98.65 E-value=2.1e-07 Score=100.04 Aligned_cols=123 Identities=15% Similarity=0.239 Sum_probs=92.9
Q ss_pred CceEEEEEEEEEecccccc----CcC-CCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEE
Q 010550 261 KPVGILHVKVVRASKLLKK----DFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF 335 (507)
Q Consensus 261 ~~~g~L~V~v~~A~~L~~~----d~~-g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~ 335 (507)
.-.|.|.++|.+|+-+... +.. ...||||++.+++.++ .|| .+..||.|+|+|.+.+.......+.|+|.
T Consensus 7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v--~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk 81 (758)
T PLN02352 7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV--AKT---SHEYDRVWNQTFQILCAHPLDSTITITLK 81 (758)
T ss_pred ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE--ecC---CCCCCCccccceeEEeeeecCCcEEEEEe
Confidence 3469999999999843321 111 1239999999997765 466 55669999999999998766467999998
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCc-eEEEEeccccccCCCCCCCccceEEEEEEEEEeccCC
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHET-KEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~ 398 (507)
| ...+||.+.+|+.++..++. .+.|+++...- .+.... ..|++++.|.|...+
T Consensus 82 ~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~----~~p~~~-~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 82 T-----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN----GKPNPE-LKLRFMLWFRPAELE 135 (758)
T ss_pred c-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC----CCCCCC-CEEEEEEEEEEhhhC
Confidence 8 25799999999999998865 78899885431 111112 599999999998876
No 221
>PLN02223 phosphoinositide phospholipase C
Probab=98.58 E-value=3.1e-07 Score=95.17 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=64.1
Q ss_pred CceEEEEEEeeeecCCC--------CCCCCcEEEEEEcCe-----EEEeeeecCCCCCcccceEEEEecCCCCCceEEEE
Q 010550 427 GAGLLSVLVQGAEDVEG--------ENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE 493 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~--------~~~~dPyv~v~~~~~-----~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~ 493 (507)
....|.|+|+.|+.++. ...+||||+|.+.|. +++|++..++.||+|||+|+|.+..|++ .-|.++
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL-AlLrf~ 485 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL-ALISFE 485 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc-eEEEEE
Confidence 34679999999998741 125799999999762 4578887889999999999999988743 689999
Q ss_pred EEEC----CCCeeeeEe
Q 010550 494 VMSK----RTGVIGACG 506 (507)
Q Consensus 494 V~d~----~~~~iG~~~ 506 (507)
|+|+ +++++|+..
T Consensus 486 V~D~D~~~~ddfiGQ~~ 502 (537)
T PLN02223 486 VYDYEVSTADAFCGQTC 502 (537)
T ss_pred EEecCCCCCCcEEEEEe
Confidence 9996 688999863
No 222
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.53 E-value=3.4e-07 Score=92.85 Aligned_cols=119 Identities=28% Similarity=0.405 Sum_probs=95.4
Q ss_pred EEEEEEEEEeccccccCcC-CCCCcEEEEEEcCccCCceeeeecCCCCCCeEe-eEEEEEeecC--CCCeEEEEEEEcCC
Q 010550 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN-ENFKLVVKEP--ESQILQLQVFDWDK 339 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wn-e~f~f~v~~~--~~~~L~v~V~d~~~ 339 (507)
|.|.|+|..|++|+-+|.. ...|.||.+.+.+.. ++|.+..+++||.|| +-|.|.+.+. ....|.+++.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t---~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTT---FKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccc---eehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7789999999999998864 457999999999766 489999999999999 6788998753 36789999999999
Q ss_pred CCCCCeeEEEEEECcccCCCC----------ceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 340 VGGHDRLGMQLVPLKLLTPHE----------TKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~~~----------~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
.+.+|-||.+.|+++.|.-.+ -..-|+++...+. ..+|+|.+-+..
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-------girgeinvivkv 135 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-------GIRGEINVIVKV 135 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-------cccceeEEEEEE
Confidence 999999999999999886321 2346777765432 356777766543
No 223
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.41 E-value=1.7e-07 Score=100.81 Aligned_cols=225 Identities=16% Similarity=0.202 Sum_probs=139.3
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeec---------CCCCeEEEE
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE---------PESQILQLQ 333 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---------~~~~~L~v~ 333 (507)
.-.+++.+.+|+.|...|..+.+|||+.+.+-++. +.|.++.+|+||.|+++..|.-.+ ..-..+.++
T Consensus 205 ~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs---~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e 281 (1105)
T KOG1326|consen 205 HSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQS---KETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFE 281 (1105)
T ss_pred hhhhHHHHHHHHhhcCCCcccCCCchhhhhccccc---ceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEE
Confidence 34577888999999999999999999999988765 589999999999999998875221 113578899
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCC-cccccccccccccC
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED-SIKFSSVSKKYSRK 412 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~-~~~~~~~~~~~~~~ 412 (507)
+||.++.+.++++|++.....-... .+...|.+..+. ....|.+.++......... ..+.... .
T Consensus 282 ~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~rg--------~~l~gd~l~a~eliq~~~~i~~p~~~~------~ 346 (1105)
T KOG1326|consen 282 VYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMRG--------AFLDGDVLIAAELIQIGKPIPQPPPQR------E 346 (1105)
T ss_pred eehhhhhchHHhhcccccceEEEec-CCccceEEeecc--------cccccchhHHHHHHhhcCCCCCCCccc------c
Confidence 9999999999999997654433332 334445555432 3344554443321111000 0000000 0
Q ss_pred CCCCCCCCCccc--CCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeecC-CCCCcccceEEEEecCCCC
Q 010550 413 GSGNDQSSDEEA--LSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPPL 486 (507)
Q Consensus 413 ~~~~~~~~~~~~--~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~~~~~~~kT~v~~~-t~nP~wnE~f~f~v~~~~~ 486 (507)
..... -|... -...+.+.|--..-+|+.. .....|-+-+.++++..+|-++.. -.||.++..|.+..-..+.
T Consensus 347 ~~~~~--vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~~~v~lpd 424 (1105)
T KOG1326|consen 347 IIFSL--VPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLGRLVILPD 424 (1105)
T ss_pred cceec--cccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEEEEEeccc
Confidence 00000 01110 0122333333333344432 236789999999999888877654 7899999877665433322
Q ss_pred ----CceEEEEEEEC----CCCeeeeEeC
Q 010550 487 ----HEKIHIEVMSK----RTGVIGACGN 507 (507)
Q Consensus 487 ----~~~L~v~V~d~----~~~~iG~~~~ 507 (507)
...+.++|.|. .....|+|.+
T Consensus 425 ~e~Y~ppl~akvvd~~~fg~~~v~g~c~i 453 (1105)
T KOG1326|consen 425 EELYMPPLNAKVVDLRQFGRMEVVGQCKI 453 (1105)
T ss_pred hHhhCccceeEEEecccccceeehhhhcc
Confidence 23899999987 5567777753
No 224
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.36 E-value=2.1e-07 Score=100.11 Aligned_cols=91 Identities=29% Similarity=0.400 Sum_probs=81.9
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 344 (507)
.++|.+++|.+|...|.+|.+|||+++.++++.. ..+...+.+|+||+|.+.|++....+....+.++|||+|..+.|+
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~-~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~ 692 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRT-LDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDE 692 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccchh-hhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccc
Confidence 5679999999999999999999999999997654 246778899999999999999988888889999999999999999
Q ss_pred eeEEEEEECccc
Q 010550 345 RLGMQLVPLKLL 356 (507)
Q Consensus 345 ~lG~~~i~l~~l 356 (507)
.+|+..++|+.-
T Consensus 693 ~iget~iDLEnR 704 (1105)
T KOG1326|consen 693 KIGETTIDLENR 704 (1105)
T ss_pred hhhceehhhhhc
Confidence 999999998754
No 225
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.35 E-value=2e-06 Score=91.01 Aligned_cols=78 Identities=24% Similarity=0.297 Sum_probs=64.3
Q ss_pred ceEEEEEEeeeecCCC---C------CCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEE
Q 010550 428 AGLLSVLVQGAEDVEG---E------NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE 493 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~---~------~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~ 493 (507)
...|.|+|+.|++++. + ...||||+|.+-| .+++|++..++.||+|||+|+|.+..|++ .-|.++
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL-AllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL-ALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce-eEEEEE
Confidence 4679999999998641 1 2479999999965 24689998999999999999999988743 689999
Q ss_pred EEEC----CCCeeeeEe
Q 010550 494 VMSK----RTGVIGACG 506 (507)
Q Consensus 494 V~d~----~~~~iG~~~ 506 (507)
|+|+ +++++|+..
T Consensus 547 V~d~d~~~~ddfiGQ~~ 563 (598)
T PLN02230 547 VHEHDINEKDDFGGQTC 563 (598)
T ss_pred EEECCCCCCCCEEEEEE
Confidence 9996 688999863
No 226
>PLN02952 phosphoinositide phospholipase C
Probab=98.34 E-value=2.7e-06 Score=90.10 Aligned_cols=78 Identities=32% Similarity=0.413 Sum_probs=63.8
Q ss_pred ceEEEEEEeeeecCCC--C-------CCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEE
Q 010550 428 AGLLSVLVQGAEDVEG--E-------NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE 493 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~--~-------~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~ 493 (507)
...|.|+|+.|++++. . ...||||+|.+-| .+++|+++.++.||+|||+|.|.+..+++ .-+.++
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL-Allrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL-ALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc-cEEEEE
Confidence 4679999999988742 1 1359999999965 35699999999999999999999988743 579999
Q ss_pred EEEC----CCCeeeeEe
Q 010550 494 VMSK----RTGVIGACG 506 (507)
Q Consensus 494 V~d~----~~~~iG~~~ 506 (507)
|+|+ .++++|+..
T Consensus 548 V~D~D~~~~ddfiGq~~ 564 (599)
T PLN02952 548 VREYDMSEKDDFGGQTC 564 (599)
T ss_pred EEecCCCCCCCeEEEEE
Confidence 9996 688999863
No 227
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.33 E-value=3e-06 Score=89.50 Aligned_cols=78 Identities=26% Similarity=0.316 Sum_probs=63.7
Q ss_pred ceEEEEEEeeeecCC----C-----CCCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEE
Q 010550 428 AGLLSVLVQGAEDVE----G-----ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE 493 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~----~-----~~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~ 493 (507)
...|.|+|+.|++++ . ....||||+|.+.| .+++|+++.++.||+|||.|+|.+..|++ .-|.+.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL-AllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL-ALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce-eEEEEE
Confidence 467999999998753 1 12579999999964 35699999999999999999999988743 689999
Q ss_pred EEEC----CCCeeeeEe
Q 010550 494 VMSK----RTGVIGACG 506 (507)
Q Consensus 494 V~d~----~~~~iG~~~ 506 (507)
|+|+ .++++|+..
T Consensus 530 V~d~D~~~~ddfigq~~ 546 (581)
T PLN02222 530 VHEYDMSEKDDFGGQTC 546 (581)
T ss_pred EEECCCCCCCcEEEEEE
Confidence 9995 688999864
No 228
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.32 E-value=4.1e-07 Score=99.03 Aligned_cols=107 Identities=26% Similarity=0.213 Sum_probs=87.6
Q ss_pred ceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEE---eecCCCCeEEEEEEE
Q 010550 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV---VKEPESQILQLQVFD 336 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~---v~~~~~~~L~v~V~d 336 (507)
..|+|.|-|..|++|+--.-+..+||||+.++.+. +..++||+++++|.||+|||...+. ......++|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 46899999999999966544567999999999764 4456799999999999999987765 222345789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
.+....+.++|.+.++|.++...+....|+.+
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 99988999999999999998877665567665
No 229
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.20 E-value=1.9e-06 Score=94.06 Aligned_cols=79 Identities=27% Similarity=0.529 Sum_probs=63.0
Q ss_pred ceEEEEEEeeeecCC---CCCCCCcEEEEEEcCe-----EEEeeeecCCCCCcccceEEEE-ecCCCCC-ceEEEEEEEC
Q 010550 428 AGLLSVLVQGAEDVE---GENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFM-LDEPPLH-EKIHIEVMSK 497 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~---~~~~~dPyv~v~~~~~-----~~kT~v~~~t~nP~wnE~f~f~-v~~~~~~-~~L~v~V~d~ 497 (507)
.|.|.|.|+.|++|+ +...+||||+.++... ++||+++++|.||.|||.+.|. .+...+. ..|+++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 356999999999994 3357999999999642 4699999999999999999987 3333223 3899999988
Q ss_pred ----CCCeeeeEe
Q 010550 498 ----RTGVIGACG 506 (507)
Q Consensus 498 ----~~~~iG~~~ 506 (507)
.+.++|.+.
T Consensus 1603 ~~~~en~~lg~v~ 1615 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVN 1615 (1639)
T ss_pred cceeeeeeeeeee
Confidence 778888763
No 230
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=1.9e-06 Score=82.47 Aligned_cols=98 Identities=34% Similarity=0.369 Sum_probs=80.7
Q ss_pred cccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEE
Q 010550 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (507)
Q Consensus 258 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~ 333 (507)
++.....-|.|++++|.+|..+|.+|.+||||..++.+. ..-+++|.+.++|.||.||+.|.+.+.. .....+.+.
T Consensus 227 ~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls 306 (362)
T KOG1013|consen 227 AYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS 306 (362)
T ss_pred ccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence 455567789999999999999999999999999998753 2335789999999999999999988753 346789999
Q ss_pred EEEcCCCCCCCeeEEEEEECcc
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKL 355 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~ 355 (507)
|||++..+..+++|-+......
T Consensus 307 vgd~~~G~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 307 VGDYDIGKSNDSIGGSMLGGYR 328 (362)
T ss_pred ecccCCCcCccCCCcccccccc
Confidence 9999988788899887654433
No 231
>PLN02270 phospholipase D alpha
Probab=98.14 E-value=8.7e-06 Score=88.08 Aligned_cols=77 Identities=21% Similarity=0.371 Sum_probs=65.4
Q ss_pred ceEEEEEEeeeecCCC---------------------CCCCCcEEEEEEcCeEE-EeeeecCC-CCCcccceEEEEecCC
Q 010550 428 AGLLSVLVQGAEDVEG---------------------ENHNNPYAIILYKGDKK-RTKMIRKT-RDPAWNEEFQFMLDEP 484 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~---------------------~~~~dPyv~v~~~~~~~-kT~v~~~t-~nP~wnE~f~f~v~~~ 484 (507)
-|.|.++|++|++|+. ++.+||||.|.+++.+. +|+++.+. .||+|||.|...|...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 3679999999998873 24679999999998876 99999884 6999999999999886
Q ss_pred CCCceEEEEEEEC---CCCeeeeEe
Q 010550 485 PLHEKIHIEVMSK---RTGVIGACG 506 (507)
Q Consensus 485 ~~~~~L~v~V~d~---~~~~iG~~~ 506 (507)
...+.+.|+|. +..+||.+.
T Consensus 87 --~~~v~f~vkd~~~~g~~~ig~~~ 109 (808)
T PLN02270 87 --ASNIIFTVKDDNPIGATLIGRAY 109 (808)
T ss_pred --cceEEEEEecCCccCceEEEEEE
Confidence 47899999998 778999763
No 232
>PLN02228 Phosphoinositide phospholipase C
Probab=98.08 E-value=1.8e-05 Score=83.51 Aligned_cols=78 Identities=23% Similarity=0.273 Sum_probs=63.4
Q ss_pred ceEEEEEEeeeecCCC---C------CCCCcEEEEEEcC-----eEEEeeeecCCCCCcc-cceEEEEecCCCCCceEEE
Q 010550 428 AGLLSVLVQGAEDVEG---E------NHNNPYAIILYKG-----DKKRTKMIRKTRDPAW-NEEFQFMLDEPPLHEKIHI 492 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~---~------~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~w-nE~f~f~v~~~~~~~~L~v 492 (507)
...|.|+|++|++|+. . ...||||+|.+.| .+++|++++++.||+| ||+|+|.+..+++ .-|.+
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL-A~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL-ALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce-eEEEE
Confidence 4579999999998731 1 2489999999864 2459999988899999 9999999988754 68999
Q ss_pred EEEEC----CCCeeeeEe
Q 010550 493 EVMSK----RTGVIGACG 506 (507)
Q Consensus 493 ~V~d~----~~~~iG~~~ 506 (507)
.|+|+ .++++|+..
T Consensus 509 ~V~D~d~~~~d~figq~~ 526 (567)
T PLN02228 509 KVQDYDNDTQNDFAGQTC 526 (567)
T ss_pred EEEeCCCCCCCCEEEEEE
Confidence 99996 678999864
No 233
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.04 E-value=1.6e-05 Score=84.40 Aligned_cols=76 Identities=25% Similarity=0.440 Sum_probs=63.6
Q ss_pred EEEEEEeeeecCCCC-------CCCCcEEEEEEcCe-----EEEee-eecCCCCCcccceEEEEecCCCCCceEEEEEEE
Q 010550 430 LLSVLVQGAEDVEGE-------NHNNPYAIILYKGD-----KKRTK-MIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMS 496 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~-------~~~dPyv~v~~~~~-----~~kT~-v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d 496 (507)
.|.|.|.++++++.. ..+||||.|.+-|. +.+|+ +..++-||.|+|+|+|.+..|++ .-|.+.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL-AliRF~V~d 695 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL-ALIRFEVHD 695 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce-eEEEEEEEe
Confidence 799999999976531 36899999998763 45999 55679999999999999999854 789999999
Q ss_pred C----CCCeeeeEe
Q 010550 497 K----RTGVIGACG 506 (507)
Q Consensus 497 ~----~~~~iG~~~ 506 (507)
+ +|+|+|+..
T Consensus 696 ~d~~~~ddF~GQ~t 709 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTT 709 (746)
T ss_pred cCCCCcccccceee
Confidence 8 699999864
No 234
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=97.99 E-value=7.7e-06 Score=83.25 Aligned_cols=79 Identities=23% Similarity=0.473 Sum_probs=68.7
Q ss_pred ceEEEEEEeeeecCCCC----CCCCcEEEEEEcCeEEEeeeecCCCCCcccc-eEEEEecCCCCC-ceEEEEEEEC----
Q 010550 428 AGLLSVLVQGAEDVEGE----NHNNPYAIILYKGDKKRTKMIRKTRDPAWNE-EFQFMLDEPPLH-EKIHIEVMSK---- 497 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~----~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE-~f~f~v~~~~~~-~~L~v~V~d~---- 497 (507)
.|.|.|.|..||+||-. ...|.||++.+++.+.||.|..+++||.||. =|.|.+.+.++. ++|+|.++|+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 36789999999999853 4689999999999999999999999999995 699999887664 4999999998
Q ss_pred CCCeeeeEe
Q 010550 498 RTGVIGACG 506 (507)
Q Consensus 498 ~~~~iG~~~ 506 (507)
.++-||.+.
T Consensus 82 andaigkv~ 90 (1169)
T KOG1031|consen 82 ANDAIGKVN 90 (1169)
T ss_pred cccccceee
Confidence 788888763
No 235
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.99 E-value=5.8e-06 Score=63.85 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=67.0
Q ss_pred EEEEEEeccccccCcCC-CCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEEEEcCCCCCC
Q 010550 267 HVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVFDWDKVGGH 343 (507)
Q Consensus 267 ~V~v~~A~~L~~~d~~g-~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V~d~~~~~~d 343 (507)
-|++++|++|.-....| .+.-|++--+.-.+.-..||+++++..||+|+|+|.|.+.. ..+-.|-|.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 47889999987654333 34456655443222223689999999999999999998763 345678899988 45677
Q ss_pred CeeEEEEEECcccCCC
Q 010550 344 DRLGMQLVPLKLLTPH 359 (507)
Q Consensus 344 ~~lG~~~i~l~~l~~~ 359 (507)
+.||.|.+.++++.++
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 8999999999998765
No 236
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.89 E-value=5.7e-05 Score=80.01 Aligned_cols=77 Identities=23% Similarity=0.347 Sum_probs=62.5
Q ss_pred eEEEEEEeeeecCCCC--CCCCcEEEEEEcC------eEEEeeeecCCCCCccc-ceEEEEecCCCCCceEEEEEEEC--
Q 010550 429 GLLSVLVQGAEDVEGE--NHNNPYAIILYKG------DKKRTKMIRKTRDPAWN-EEFQFMLDEPPLHEKIHIEVMSK-- 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~--~~~dPyv~v~~~~------~~~kT~v~~~t~nP~wn-E~f~f~v~~~~~~~~L~v~V~d~-- 497 (507)
-.|.|.|..||.|+.+ +...|||.|.+-| +.+.|.|+.+.+||+|| |.|+|.|.+|+. .-|.+.|+|.
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~-A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF-AFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce-EEEEEEEecccc
Confidence 3588999999999864 4566999999965 23455667789999999 999999999843 6899999998
Q ss_pred --CCCeeeeEe
Q 010550 498 --RTGVIGACG 506 (507)
Q Consensus 498 --~~~~iG~~~ 506 (507)
...|||++.
T Consensus 1144 fs~~~FiaqA~ 1154 (1267)
T KOG1264|consen 1144 FSDPNFLAQAT 1154 (1267)
T ss_pred cCCcceeeeee
Confidence 456999874
No 237
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=97.74 E-value=0.00014 Score=75.80 Aligned_cols=226 Identities=18% Similarity=0.265 Sum_probs=146.0
Q ss_pred CCCCceeCCCC-------cchHHHHHHHHhhchh------HHHHHHHHHHHHHHHHHhhccCCceeeeEEEeEeeCCCCC
Q 010550 61 EIPLWVKNPDY-------ERVDWLNRFLSDMWPY------LDKAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLP 127 (507)
Q Consensus 61 ~~p~w~~~~d~-------E~~~WlN~~l~~~Wp~------~~~~~~~~i~~~~~~~l~~~~p~~~l~~i~~~~~~lG~~~ 127 (507)
+.|.|+..... -.|-.+|.++..+..- .+.++-+.....++.++....-+--++.+++.++-+|.+.
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f 160 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF 160 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence 58888876432 2455667777777652 2233333334444444544332223899999999999999
Q ss_pred CeEeeEEEEecC------------C-------------CeEEEeeeeeEeCCCcEEEEEEE-eeeEEEEEEEEEEEEEEE
Q 010550 128 PTIYGIRVYETN------------E-------------NQLVMEPALRWAGNPNIVLVLKL-LSFRITVQLVDLQIFAAP 181 (507)
Q Consensus 128 P~i~~ir~~~~~------------~-------------~~~~le~~~~~~~~~~i~l~~~~-~~~~~~v~v~~~~~~g~~ 181 (507)
|.+++.+++.-+ + ..+.+=.++.|.|+.--++++.. .+.+..+.++-.+++|.+
T Consensus 161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~ 240 (1051)
T KOG3532|consen 161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV 240 (1051)
T ss_pred ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence 999999998610 1 12345568899998777777654 233333444456999999
Q ss_pred EEEEecCCCCCCceeEEEEEcCCCceEEEEEEE--cCcccccCcchHHHHHHHHHHHhhhcccCCccc-------eeccc
Q 010550 182 RITLKPLVPTFPCFATMVVSLMERPHVDFGIKI--LGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTY-------EIPIL 252 (507)
Q Consensus 182 rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~--~g~~i~~ip~l~~~~~~~i~~~l~~~~v~P~~~-------~~~l~ 252 (507)
|+.+. ..|+ .+|+++|.+.|.+..+++. .|..+-+ -+.+.|...|+..+.+...||++- .-|+-
T Consensus 241 r~~~~----r~py-~hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~ 313 (1051)
T KOG3532|consen 241 RVILS----RQPY-HHWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIF 313 (1051)
T ss_pred eEEEE----eccc-eeeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccCccc
Confidence 99986 4455 8999999999987554442 2222111 234567777888888889999842 11111
Q ss_pred cccc----ccccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcC
Q 010550 253 DASS----VAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG 295 (507)
Q Consensus 253 ~~~~----~~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~ 295 (507)
.... ...-.+.|.+.|++.++..|... ++...-||.+.+..
T Consensus 314 ~a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 314 QASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES 358 (1051)
T ss_pred ccCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence 1111 01234679999999999888654 57888999998854
No 238
>PLN02964 phosphatidylserine decarboxylase
Probab=97.71 E-value=4.1e-05 Score=82.15 Aligned_cols=93 Identities=19% Similarity=0.307 Sum_probs=75.9
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcC
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~ 338 (507)
.+.-.|+..+++++|+ ++ ..|+|..+-.-+.+. .||.+.++|.||+||+...|.+...+....++.|||.+
T Consensus 49 ~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~--f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQT--FRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETN 119 (644)
T ss_pred cccccCeEEEEeehhh----hc---cCCcEEEEEEeccee--eeeccccccCCcccchhhceEeccCCcceEEEEEEecC
Confidence 4566799999999997 33 358876654443432 69999999999999999999998766667899999999
Q ss_pred CCCCCCeeEEEEEECcccCCCC
Q 010550 339 KVGGHDRLGMQLVPLKLLTPHE 360 (507)
Q Consensus 339 ~~~~d~~lG~~~i~l~~l~~~~ 360 (507)
.+++++++|.|.+++.++...+
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred CCCHHHhhhheeecHhhccHHH
Confidence 9999999999999888776543
No 239
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.62 E-value=9.1e-05 Score=76.49 Aligned_cols=88 Identities=32% Similarity=0.558 Sum_probs=70.6
Q ss_pred EEEeccccccCcCCCCCcEEEEEEc---CccCCceeeeecCCCCCCeEeeEEEEEeecC----CCCeEEEEEEEcCCCCC
Q 010550 270 VVRASKLLKKDFLGTSDPYVKLSLT---GEKLPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQILQLQVFDWDKVGG 342 (507)
Q Consensus 270 v~~A~~L~~~d~~g~~dpyv~v~l~---~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~~L~v~V~d~~~~~~ 342 (507)
..+|++|..+|..+++|||..++-. +.....++|.+.++++||.|.+ |.+..... ....+.+.+||++..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 3568999999999999999988753 2233457899999999999996 44444322 24678899999999999
Q ss_pred CCeeEEEEEECcccCC
Q 010550 343 HDRLGMQLVPLKLLTP 358 (507)
Q Consensus 343 d~~lG~~~i~l~~l~~ 358 (507)
++++|++..++.++..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 9999999999999874
No 240
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.61 E-value=6.7e-05 Score=58.08 Aligned_cols=74 Identities=16% Similarity=0.302 Sum_probs=57.0
Q ss_pred EEEeeeecCC--CCC--CCCcEEEEEE--cC-eEEEeeeecCCCCCcccceEEEEecCCCCCc-eEEEEEEEC--CCCee
Q 010550 433 VLVQGAEDVE--GEN--HNNPYAIILY--KG-DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHE-KIHIEVMSK--RTGVI 502 (507)
Q Consensus 433 V~v~~a~~L~--~~~--~~dPyv~v~~--~~-~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~-~L~v~V~d~--~~~~i 502 (507)
++|.+|+||. ... .+.-|++-.+ .. ...||++...+.||+|+|+|.|.+..-.+.+ .|.++|+.. +++.|
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~RKe~i 82 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTPRKRTI 82 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCCcccee
Confidence 6788999984 222 3444666444 22 2359999999999999999999988766655 899999998 88999
Q ss_pred eeEe
Q 010550 503 GACG 506 (507)
Q Consensus 503 G~~~ 506 (507)
|.|.
T Consensus 83 G~~s 86 (103)
T cd08684 83 GECS 86 (103)
T ss_pred eEEE
Confidence 9985
No 241
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.56 E-value=0.00014 Score=60.70 Aligned_cols=94 Identities=26% Similarity=0.344 Sum_probs=68.5
Q ss_pred EEEEEEEeccccccCc-------------CCCCCcEEEEEEcC-ccCCceeeeecCCCCCCeEeeEEEEEee--------
Q 010550 266 LHVKVVRASKLLKKDF-------------LGTSDPYVKLSLTG-EKLPWKKTTVKKKNLNPEWNENFKLVVK-------- 323 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~-------------~g~~dpyv~v~l~~-~~~~~~~T~v~~~t~nP~Wne~f~f~v~-------- 323 (507)
|.|.|++|.+|+.... .-.-++||++.+.- .....++|+++-++-.|.|+.+++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4678889999875321 01248999999643 1223468999999999999999999875
Q ss_pred c-------CCCCeEEEEEEEcCCC----------CCCCeeEEEEEECcccCCC
Q 010550 324 E-------PESQILQLQVFDWDKV----------GGHDRLGMQLVPLKLLTPH 359 (507)
Q Consensus 324 ~-------~~~~~L~v~V~d~~~~----------~~d~~lG~~~i~l~~l~~~ 359 (507)
+ .+...+.++||+.+.. .+|-+||.+.||+.+|...
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~ 133 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK 133 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc
Confidence 1 1256899999997632 2445899999999998754
No 242
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=9.2e-05 Score=72.41 Aligned_cols=109 Identities=25% Similarity=0.334 Sum_probs=85.6
Q ss_pred CceEEEEEEEEEeccccccCcC-CCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEE-E
Q 010550 261 KPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-D 336 (507)
Q Consensus 261 ~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~-d 336 (507)
..+|.+.|.+++|++|..+... ..++|||+|++.+. ...+.+|+...+|.+|.+.+...|.- .+....|.+.|| |
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~-sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ-SPPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc-CCCccEEEEEEecc
Confidence 4579999999999999876433 25899999998654 34567899999999998887666654 345678999999 4
Q ss_pred cCCCCCCCeeEEEEEECcccCCCC-ceEEEEeccc
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTPHE-TKEFTLDLLK 370 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~l~~ 370 (507)
+.++..+.|+|.+.+-+.+|.... ....|+++..
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 666777789999999999998765 6677887754
No 243
>PLN02964 phosphatidylserine decarboxylase
Probab=96.97 E-value=0.0012 Score=71.05 Aligned_cols=76 Identities=21% Similarity=0.433 Sum_probs=59.8
Q ss_pred CCceEEEEEEeeeecCCCCCCCCcEEE-EEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCC
Q 010550 426 SGAGLLSVLVQGAEDVEGENHNNPYAI-ILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTG 500 (507)
Q Consensus 426 ~~~g~L~V~v~~a~~L~~~~~~dPyv~-v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~ 500 (507)
.-+|++.+++.+|+ + +..|||.. +++|.+..||.+.++|.||+|||.-.|.+..... ...+++|||. .++
T Consensus 51 ~~~~~~~~~~~~~~-~---~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~n~ 125 (644)
T PLN02964 51 DFSGIALLTLVGAE-M---KFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGP-HLARISVFETNRLSKNT 125 (644)
T ss_pred cccCeEEEEeehhh-h---ccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCc-ceEEEEEEecCCCCHHH
Confidence 36789999999987 2 34688655 6677788999999999999999999999987643 3569999998 456
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
++|-|+
T Consensus 126 lv~~~e 131 (644)
T PLN02964 126 LVGYCE 131 (644)
T ss_pred hhhhee
Confidence 665543
No 244
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.82 E-value=0.09 Score=52.56 Aligned_cols=230 Identities=17% Similarity=0.230 Sum_probs=137.3
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeec-------CCCCeEEEEEEEcC
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-------PESQILQLQVFDWD 338 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-------~~~~~L~v~V~d~~ 338 (507)
+.|+|+++++.+... ...-.+..++++... .|..+..+..|.||......+.. .....+++++|-.|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l---~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESL---ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCcee---eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 678999999998762 345678888888765 67778889999999888877642 23678999999988
Q ss_pred -CCCCCCeeEEEEEECccc---CCC--CceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCCccccc--cccc-cc
Q 010550 339 -KVGGHDRLGMQLVPLKLL---TPH--ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFS--SVSK-KY 409 (507)
Q Consensus 339 -~~~~d~~lG~~~i~l~~l---~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~--~~~~-~~ 409 (507)
..+..+.+|.+.++|+.. ..+ .....|++|....+ +-.+.+-+|.+.+............. ...+ ..
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~----~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p 151 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS----KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAP 151 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc----ccccCCccEEEEEEEeccccccCCccccccccCCC
Confidence 456778999999999998 544 45567887754311 11234567777776655433211100 0000 00
Q ss_pred ccCCC-------CCC--------------CCCCcccCCCceEEEEEEeeeecCCC--------C-CCCCcEEEEEEcCeE
Q 010550 410 SRKGS-------GND--------------QSSDEEALSGAGLLSVLVQGAEDVEG--------E-NHNNPYAIILYKGDK 459 (507)
Q Consensus 410 ~~~~~-------~~~--------------~~~~~~~~~~~g~L~V~v~~a~~L~~--------~-~~~dPyv~v~~~~~~ 459 (507)
.+.+. ... +-.|.......=+|.|++..|+||.. + +...-|...++-|..
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~ 231 (340)
T PF12416_consen 152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND 231 (340)
T ss_pred cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence 00000 000 00000111122357888888988743 1 224556667777877
Q ss_pred EEeeeecCCCCCccc--ceEEEEecCCC--------CCceEEEEEEECCCCeeeeEe
Q 010550 460 KRTKMIRKTRDPAWN--EEFQFMLDEPP--------LHEKIHIEVMSKRTGVIGACG 506 (507)
Q Consensus 460 ~kT~v~~~t~nP~wn--E~f~f~v~~~~--------~~~~L~v~V~d~~~~~iG~~~ 506 (507)
..|..-+...+|.|. +..-+.+.-.. ....|.|-++- ++..||.+.
T Consensus 232 Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-g~~~Lg~~~ 287 (340)
T PF12416_consen 232 VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-GNQSLGSTS 287 (340)
T ss_pred eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-CCcEEEEEE
Confidence 888888888888765 22224443221 11245555554 456677653
No 245
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.73 E-value=0.0016 Score=64.61 Aligned_cols=126 Identities=20% Similarity=0.189 Sum_probs=90.9
Q ss_pred ceEEEEEEEEEeccccccCcCCCCCcEEEEEEc--CccCCceeeeecCCCCCCeEeeEEEEEeecC-----------CCC
Q 010550 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLVVKEP-----------ESQ 328 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~--~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-----------~~~ 328 (507)
....|.+.|+++.+++........|.|+++.+. +....+.+|.++++|.+|.|+|.|.+.+... ...
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 345667777788777654322335778887763 2222345899999999999999999988641 134
Q ss_pred eEEEEEEEcCCC-CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 329 ILQLQVFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 329 ~L~v~V~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
.+.|++|++..+ ++|.++|.+.+.|..|.........+++... .....|.+.+++...-
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-------RK~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-------RKAVGGKLEVKVRIRQ 504 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-------ccccCCeeEEEEEEec
Confidence 689999998754 6788999999999999877666777776432 2456788888887653
No 246
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.55 E-value=0.067 Score=47.52 Aligned_cols=90 Identities=26% Similarity=0.273 Sum_probs=60.9
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEE--cCccCC-ceeeeecCCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEc
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDW 337 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~V~d~ 337 (507)
..++|+++++.++.-.+ .+|-||.+.+ +++... ...|+.+. ..++.|||...|.+. + +....|.|++|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 45789999999987643 4688888865 333321 12343333 367999999888765 2 3467899999997
Q ss_pred CCCC----CCCeeEEEEEECcccC
Q 010550 338 DKVG----GHDRLGMQLVPLKLLT 357 (507)
Q Consensus 338 ~~~~----~d~~lG~~~i~l~~l~ 357 (507)
.... ....+|.+.++|-+-.
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCC
Confidence 6421 1246999999987643
No 247
>PLN02352 phospholipase D epsilon
Probab=96.49 E-value=0.0089 Score=65.12 Aligned_cols=74 Identities=24% Similarity=0.418 Sum_probs=57.0
Q ss_pred ceEEEEEEeeeecCCCC--------CCCCcEEEEEEcCeEE-EeeeecCCCCCcccceEEEEecCCCCCceEEEEEEECC
Q 010550 428 AGLLSVLVQGAEDVEGE--------NHNNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKR 498 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~--------~~~dPyv~v~~~~~~~-kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~~ 498 (507)
-|.|.++|.+|+-+... ...||||.|.+++.+. +| .+..||+|+|.|...|... .+..+.+.|+| +
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~-~ 83 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKT-K 83 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEec-C
Confidence 46799999998733210 1349999999998765 88 5667999999999999886 23579999999 5
Q ss_pred CCeeeeEe
Q 010550 499 TGVIGACG 506 (507)
Q Consensus 499 ~~~iG~~~ 506 (507)
..+||.+.
T Consensus 84 ~~~ig~~~ 91 (758)
T PLN02352 84 CSILGRFH 91 (758)
T ss_pred CeEEEEEE
Confidence 67888763
No 248
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.32 E-value=0.21 Score=43.54 Aligned_cols=124 Identities=20% Similarity=0.244 Sum_probs=79.6
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeec-CCCCCCeEeeEEEEEeec--------CCCCeEEEE
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVK-KKNLNPEWNENFKLVVKE--------PESQILQLQ 333 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~-~~t~nP~Wne~f~f~v~~--------~~~~~L~v~ 333 (507)
.=.+.|++++..+++.. ...-||+...+.......+|... ..+..-.|||.|.+.+.- .....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 34678889999888762 23345555544433112233322 244557899999987651 224578899
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCC--CceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCC
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPH--ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~ 398 (507)
|+....-++...+|.+.++|.+.... ......+++... .+....+++++.+.+..++
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--------~~~~a~L~isi~~~~~~~~ 140 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--------KKSNATLSISISLSELRED 140 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--------CCCCcEEEEEEEEEECccC
Confidence 99875333336899999999999874 455566665321 2456789999988876543
No 249
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=96.02 E-value=0.015 Score=48.86 Aligned_cols=67 Identities=24% Similarity=0.370 Sum_probs=50.0
Q ss_pred EEEEEeeeecCCC----------------CCCCCcEEEEEE----cCeEEEeeeecCCCCCcccceEEEEec--------
Q 010550 431 LSVLVQGAEDVEG----------------ENHNNPYAIILY----KGDKKRTKMIRKTRDPAWNEEFQFMLD-------- 482 (507)
Q Consensus 431 L~V~v~~a~~L~~----------------~~~~dPyv~v~~----~~~~~kT~v~~~t~nP~wnE~f~f~v~-------- 482 (507)
|.|.|++|.+|.. .=..|+||.+.+ +++.++|+++-++..|.|+..++|.|+
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 3567777776631 115799999995 345679999999999999999999987
Q ss_pred CCC------CCceEEEEEEEC
Q 010550 483 EPP------LHEKIHIEVMSK 497 (507)
Q Consensus 483 ~~~------~~~~L~v~V~d~ 497 (507)
... ....+.++||.+
T Consensus 81 e~~sLAElLe~~eiil~vwHr 101 (143)
T cd08683 81 EAISLAELLESAEIILEVWHR 101 (143)
T ss_pred ccccHHHHhhcceEEeeeeec
Confidence 110 123799999987
No 250
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.66 E-value=0.019 Score=62.12 Aligned_cols=76 Identities=24% Similarity=0.329 Sum_probs=59.9
Q ss_pred CceEEEEEEeeeecCCCCCCCCcEEEEEEcC-------eEEEeeeec-CCCCCcccc-eEEEE-ecCCCCCceEEEEEEE
Q 010550 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKG-------DKKRTKMIR-KTRDPAWNE-EFQFM-LDEPPLHEKIHIEVMS 496 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~~~~dPyv~v~~~~-------~~~kT~v~~-~t~nP~wnE-~f~f~-v~~~~~~~~L~v~V~d 496 (507)
-++.+.|+|++|+=|..+ ....||.|.+-| +.++|+++. ++.||+|+| .|.|. |..|+ -.+|.|.|++
T Consensus 701 IA~t~sV~VISgqFLSdr-kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpe-LA~lRiavye 778 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDR-KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPE-LASLRIAVYE 778 (1189)
T ss_pred EEeeEEEEEEeeeecccc-ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccc-hhheeeeeec
Confidence 456799999999998774 566999999965 234888776 489999997 58876 33332 3699999999
Q ss_pred CCCCeeee
Q 010550 497 KRTGVIGA 504 (507)
Q Consensus 497 ~~~~~iG~ 504 (507)
.++.+||+
T Consensus 779 EggK~ig~ 786 (1189)
T KOG1265|consen 779 EGGKFIGQ 786 (1189)
T ss_pred cCCceeee
Confidence 99999997
No 251
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.60 E-value=0.24 Score=43.51 Aligned_cols=129 Identities=17% Similarity=0.255 Sum_probs=87.8
Q ss_pred CceEEEEEEEEEeccccccC--cCCCCCcEEEE--EEcCccCCceeeeecCCCCCCeEeeEEEEEeecCC----------
Q 010550 261 KPVGILHVKVVRASKLLKKD--FLGTSDPYVKL--SLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE---------- 326 (507)
Q Consensus 261 ~~~g~L~V~v~~A~~L~~~d--~~g~~dpyv~v--~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~---------- 326 (507)
...-.|.++|..++-....- ..+..+.-..+ .+++++ ++|+.+..+.+|.|+|.|-|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QR---F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~l 82 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQR---FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTL 82 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCce---EecCCcccccCCCCCCcEEEEecccccccccchhHh
Confidence 34567888888877433211 11344444444 446666 58889999999999999999987432
Q ss_pred ---CCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCce--EEEEeccccccCCCCCCCccceEEEEEEEEEecc
Q 010550 327 ---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK--EFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (507)
Q Consensus 327 ---~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~ 396 (507)
.+.+++.|--.|..+...++|+-.++-+.+...... ....++.... ...+...|-+.++++..|..
T Consensus 83 ls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~----~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 83 LSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG----PESKVPVGILDLRLELLPNL 153 (156)
T ss_pred hcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccC----CCCccceeEEEEEEEeecCC
Confidence 356788888777766668999999998887765443 5555553321 11234789999999998854
No 252
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.59 E-value=0.022 Score=61.68 Aligned_cols=89 Identities=22% Similarity=0.353 Sum_probs=67.7
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc----cCCceeeeecC-CCCCCeEee-EEEEE-eecCCCCeEEEEEE
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE----KLPWKKTTVKK-KNLNPEWNE-NFKLV-VKEPESQILQLQVF 335 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~----~~~~~~T~v~~-~t~nP~Wne-~f~f~-v~~~~~~~L~v~V~ 335 (507)
.+.+.|+|+++.-|..++ ...||.|.+-+- ....++|++.. ++.||+|+| .|.|. |.-++-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 467899999999987664 348999998542 11345677665 789999996 56664 33455678999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCC
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPH 359 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~ 359 (507)
+++ ..+||+-.+|+..+..+
T Consensus 778 eEg----gK~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 778 EEG----GKFIGQRILPVDGLNAG 797 (1189)
T ss_pred ccC----CceeeeeccchhcccCc
Confidence 975 36999999999999877
No 253
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.46 E-value=0.1 Score=47.22 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=60.2
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEE--cCccCC-ceeeeecCCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEc
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDW 337 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~V~d~ 337 (507)
..++|+++++.++... ....+-||.+.+ |+.... ...|+....+.++.|||...|.+. + |....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 3688999999999862 234667777644 444331 234555454567999999988764 2 3467899999997
Q ss_pred CCCC----------------CCCeeEEEEEECccc
Q 010550 338 DKVG----------------GHDRLGMQLVPLKLL 356 (507)
Q Consensus 338 ~~~~----------------~d~~lG~~~i~l~~l 356 (507)
.... .+..||.+.++|-+-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 5422 134678777776553
No 254
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=0.019 Score=56.59 Aligned_cols=77 Identities=25% Similarity=0.371 Sum_probs=60.9
Q ss_pred CCceEEEEEEeeeecCCCC----CCCCcEEEEEEcCe-----EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEE
Q 010550 426 SGAGLLSVLVQGAEDVEGE----NHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMS 496 (507)
Q Consensus 426 ~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~~~~~-----~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d 496 (507)
...|-+.|.|++|++|..+ ..++|||+|++-.. ++||+...+|.+|-|.+...|.-..+ ...|.+.||.
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~--~k~Lq~tv~g 343 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP--GKYLQGTVWG 343 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC--ccEEEEEEec
Confidence 3567899999999999653 37999999999543 45999999999999998888865443 4689999997
Q ss_pred C-----CCCeeee
Q 010550 497 K-----RTGVIGA 504 (507)
Q Consensus 497 ~-----~~~~iG~ 504 (507)
+ .+.|+|.
T Consensus 344 dygRmd~k~fmg~ 356 (405)
T KOG2060|consen 344 DYGRMDHKSFMGV 356 (405)
T ss_pred cccccchHHHhhH
Confidence 6 4456654
No 255
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.24 E-value=0.12 Score=45.89 Aligned_cols=93 Identities=25% Similarity=0.299 Sum_probs=60.7
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEE--cCccC-CceeeeecCCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEc
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKL-PWKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDW 337 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~-~~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~V~d~ 337 (507)
..++|++....++...+ ....+-||++.+ +++.. ....|.......++.|||...|.+. + +....|.+++|+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 35678888887776421 234567777754 43322 2223433333478999999888764 2 3467899999998
Q ss_pred CCCC--CCCeeEEEEEECcccC
Q 010550 338 DKVG--GHDRLGMQLVPLKLLT 357 (507)
Q Consensus 338 ~~~~--~d~~lG~~~i~l~~l~ 357 (507)
+..+ .+..||.+.++|-+-.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred ecCCCCcceEEEEEeEEeEccc
Confidence 7544 4578999999987643
No 256
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.96 E-value=0.1 Score=46.42 Aligned_cols=67 Identities=18% Similarity=0.286 Sum_probs=50.7
Q ss_pred EEEEEEeeeecCCCCCCCCcEEEEEE--cCeEE----EeeeecCCCCCcccceEEEEec--CCCCCceEEEEEEEC
Q 010550 430 LLSVLVQGAEDVEGENHNNPYAIILY--KGDKK----RTKMIRKTRDPAWNEEFQFMLD--EPPLHEKIHIEVMSK 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~~~~dPyv~v~~--~~~~~----kT~v~~~t~nP~wnE~f~f~v~--~~~~~~~L~v~V~d~ 497 (507)
-++|+|+++.+++-+..+|-||++.+ |++.. .|+.+.. .++.|||-++|.+. +.+.+..|.|.||+.
T Consensus 9 ~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 9 NLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 48999999999987667788988865 44432 4554444 78999999888764 445667999999986
No 257
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=94.56 E-value=0.078 Score=51.04 Aligned_cols=120 Identities=19% Similarity=0.239 Sum_probs=78.6
Q ss_pred ccCceEEEEEEEEEeccccccCc--CCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD 336 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d 336 (507)
.....|+|.+++..+++|+.... +-.-+-||++..+.+. ..+|.+.....-=.|.|+|+..+.+ ...+.+-||.
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh--~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvyS 121 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQH--PARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYS 121 (442)
T ss_pred eecccceEEEEEecccccccChhccCceeeeeeeeeecccC--ccccccccCCCCccchhhceeeccc--ceeeeEEEee
Confidence 34467999999999999975432 3356889999887543 3466665555555799999998875 3578999999
Q ss_pred cCCCCCCCeeEEEEEECcccCC-CCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTP-HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
++.-.++++.-.-.+.+..+.. +..+..-+. -.++|++.+++.+..
T Consensus 122 W~pq~RHKLC~~g~l~~~~v~rqspd~~~Al~------------lePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 122 WPPQRRHKLCHLGLLEAFVVDRQSPDRVVALY------------LEPRGQPPLRLPLAD 168 (442)
T ss_pred cCchhhccccccchhhhhhhhhcCCcceeeee------------cccCCCCceecccCC
Confidence 9876666653222333333322 222333332 346788888887654
No 258
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.41 E-value=0.41 Score=37.79 Aligned_cols=84 Identities=26% Similarity=0.366 Sum_probs=58.2
Q ss_pred CCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEE
Q 010550 285 SDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEF 364 (507)
Q Consensus 285 ~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~ 364 (507)
++-.+.+.+++..+ .+|.-+ ...+..|++.|.+.+. .+.+|+|.||-+|- ..+-|...+-|.+... ..
T Consensus 9 ~eV~avLklDn~~V--gqT~Wk-~~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~---RslCav~~lrLEd~~~----~~ 76 (98)
T cd08687 9 SEVSAVLKLDNTVV--GQTQWK-PKSNQAWDQSFTLELE--RSRELEIAVYWRDW---RSLCAVKFLKLEDERH----EV 76 (98)
T ss_pred cceEEEEEEcCeEE--eecccc-ccccccccceeEEEee--cccEEEEEEEEecc---hhhhhheeeEhhhhcc----cc
Confidence 57788888887554 344442 2357789999999986 46899999998863 3467777777877322 22
Q ss_pred EEeccccccCCCCCCCccceEEEEEEEE
Q 010550 365 TLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 365 ~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
.++ -.+.|.+...++|
T Consensus 77 ~~~------------lepqg~l~~ev~f 92 (98)
T cd08687 77 QLD------------MEPQLCLVAELTF 92 (98)
T ss_pred eec------------cccccEEEEEEEe
Confidence 222 3467888888887
No 259
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=94.25 E-value=0.22 Score=45.03 Aligned_cols=93 Identities=23% Similarity=0.236 Sum_probs=62.2
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEE--cCccCCc-eeeeecC----CCCCCeEeeEEEEEee---cCCCCeEEEE
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPW-KKTTVKK----KNLNPEWNENFKLVVK---EPESQILQLQ 333 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~-~~T~v~~----~t~nP~Wne~f~f~v~---~~~~~~L~v~ 333 (507)
..+.|+|.++.+++........|-|+.+.+ +++.... ..|+... -...+.|||...|.+. -+....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 567899999999987654445788888865 4433211 1333211 1235779999888765 2346789999
Q ss_pred EEEcCCCC---------CCCeeEEEEEECccc
Q 010550 334 VFDWDKVG---------GHDRLGMQLVPLKLL 356 (507)
Q Consensus 334 V~d~~~~~---------~d~~lG~~~i~l~~l 356 (507)
+|+....+ .+..||.+.++|-+-
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 99976543 345889998888664
No 260
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.90 E-value=0.23 Score=44.86 Aligned_cols=68 Identities=16% Similarity=0.344 Sum_probs=51.1
Q ss_pred EEEEEEeeeecCCC-CCCCCcEEEEEE--cCeE----EEeeeecCCCCCcccceEEEEec--CCCCCceEEEEEEEC
Q 010550 430 LLSVLVQGAEDVEG-ENHNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFMLD--EPPLHEKIHIEVMSK 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~-~~~~dPyv~v~~--~~~~----~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~~L~v~V~d~ 497 (507)
.++|+|+++.++.. ....+-||++.+ |++. ..|+.+....++.|||.++|.+. +.|.+..|.|.||+.
T Consensus 9 ~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 9 KFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 48999999999986 446777888644 5543 26666665678999999988764 445667999999986
No 261
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=93.48 E-value=0.52 Score=42.67 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=45.4
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEE--cCccCCceeeeecCCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEcC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWD 338 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~V~d~~ 338 (507)
.++|+|.++..+ ..+......-||++.+ ++......+|+...-+.++.|||...|.+. + +....|.|+||+..
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 467788887633 2222222335666543 433332335666666778999998888765 2 34678999999974
No 262
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.43 E-value=0.26 Score=43.88 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=51.7
Q ss_pred CCCCcEEEEEE--cCccC-CceeeeecCCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEcCCCCCCCeeEEEEEECccc
Q 010550 283 GTSDPYVKLSL--TGEKL-PWKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356 (507)
Q Consensus 283 g~~dpyv~v~l--~~~~~-~~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l 356 (507)
..+|-||++.+ ++... ....|+.+.-+..+.|||...|.+. + +.+..|.|+||+.+..++...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34677887765 33222 1124555555667889999888875 2 34678999999987655667899999998664
No 263
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=93.10 E-value=1.6 Score=39.19 Aligned_cols=72 Identities=18% Similarity=0.330 Sum_probs=53.1
Q ss_pred CCCcEEEEEEcCccCCceeeeecC--CCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCC
Q 010550 284 TSDPYVKLSLTGEKLPWKKTTVKK--KNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359 (507)
Q Consensus 284 ~~dpyv~v~l~~~~~~~~~T~v~~--~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~ 359 (507)
+..-|+++.++++.+ .+|+... ....-.+||.|.+.+... -..|.++||.... ..+..|+++.+|+-.....
T Consensus 36 ~~~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence 456799999998765 3444332 333346889999999763 4689999999886 6778999999998766543
No 264
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=92.90 E-value=0.58 Score=40.82 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=40.4
Q ss_pred eeeecCCC-CCCeEeeEEEEEee---cCCCCeEEEEEEEcCCCCCC----CeeEEEEEECccc
Q 010550 302 KTTVKKKN-LNPEWNENFKLVVK---EPESQILQLQVFDWDKVGGH----DRLGMQLVPLKLL 356 (507)
Q Consensus 302 ~T~v~~~t-~nP~Wne~f~f~v~---~~~~~~L~v~V~d~~~~~~d----~~lG~~~i~l~~l 356 (507)
.|+....+ .++.|||...|.+. -|....|.|+||..+....+ ..||.+.++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 55555555 79999999998875 24577899999998765554 6899999998765
No 265
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=92.89 E-value=1.1 Score=40.77 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=42.0
Q ss_pred CceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEEEEcCCCCC--CCeeEEEEEECc
Q 010550 299 PWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVFDWDKVGG--HDRLGMQLVPLK 354 (507)
Q Consensus 299 ~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V~d~~~~~~--d~~lG~~~i~l~ 354 (507)
..++|.+...+.+|.|+|++.+.+.. .....|.|+.++.....+ ...+|.+.+||-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 34689999999999999999988763 246678898887543221 257899988884
No 266
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=92.20 E-value=0.87 Score=40.10 Aligned_cols=71 Identities=25% Similarity=0.432 Sum_probs=51.3
Q ss_pred CceEEEEEEeeeecCCC-----CCCCCc--EEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCC------------CC
Q 010550 427 GAGLLSVLVQGAEDVEG-----ENHNNP--YAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP------------LH 487 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~-----~~~~dP--yv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~------------~~ 487 (507)
....|++.|..++-.-. .+..+. ++-+.+++++.+|+.+..+.+|.|+|.|-|.+.... ..
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 45679999998874321 023333 445556899999999999999999999999998663 23
Q ss_pred ceEEEEEEEC
Q 010550 488 EKIHIEVMSK 497 (507)
Q Consensus 488 ~~L~v~V~d~ 497 (507)
+.+++-|.-.
T Consensus 87 ~pihivli~~ 96 (156)
T PF15627_consen 87 DPIHIVLIRT 96 (156)
T ss_pred CceEEEEEEe
Confidence 4677777543
No 267
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=91.82 E-value=1.9 Score=39.52 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=42.2
Q ss_pred CceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEEEEcCCC-CCC---CeeEEEEEECc
Q 010550 299 PWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVFDWDKV-GGH---DRLGMQLVPLK 354 (507)
Q Consensus 299 ~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V~d~~~~-~~d---~~lG~~~i~l~ 354 (507)
...+|.+...+.+|.|+|++.+.+.. .....|.|++++.... .+| ..+|.+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 34688898999999999999988763 3467899999886422 122 46899999885
No 268
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=91.78 E-value=6 Score=36.04 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=34.5
Q ss_pred ceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEEEcCCCCCC---CeeEEEEEECcc
Q 010550 300 WKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGGH---DRLGMQLVPLKL 355 (507)
Q Consensus 300 ~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~d~~~~~~d---~~lG~~~i~l~~ 355 (507)
...|.+..++.+|.|+|+|.+.+... ....|.|++++...-.+. ..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 45788888999999999999988743 356799999987643221 589999999987
No 269
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=91.40 E-value=0.1 Score=52.20 Aligned_cols=79 Identities=16% Similarity=0.310 Sum_probs=60.9
Q ss_pred ceEEEEEEeeeecCCC---CCCCCcEEEEEEc---C--eEEEeeeecCCCCCcccceEEEEecCCCC-Cc---------e
Q 010550 428 AGLLSVLVQGAEDVEG---ENHNNPYAIILYK---G--DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HE---------K 489 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~---~~~~dPyv~v~~~---~--~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~---------~ 489 (507)
...|.+.|.++++++. ..+.|-|+++.+- + ++.||.+++.|.+|.|+|.|...+...+. +. -
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 3457777888888763 3478999999872 2 34599999999999999999999987432 11 4
Q ss_pred EEEEEEEC-----CCCeeeeEe
Q 010550 490 IHIEVMSK-----RTGVIGACG 506 (507)
Q Consensus 490 L~v~V~d~-----~~~~iG~~~ 506 (507)
+.++++.+ +|.++|-|.
T Consensus 446 ~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred eeEEEeeccccccccceeceee
Confidence 88999987 788998764
No 270
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=90.30 E-value=1.4 Score=39.04 Aligned_cols=77 Identities=16% Similarity=0.297 Sum_probs=52.0
Q ss_pred EEEEEEeeeecCCC--CCCCCcEEEEEE--cCeE----EEeeeecCCCCCcccceEEEEec--CCCCCceEEEEEEEC--
Q 010550 430 LLSVLVQGAEDVEG--ENHNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFMLD--EPPLHEKIHIEVMSK-- 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~--~~~~dPyv~v~~--~~~~----~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~~L~v~V~d~-- 497 (507)
.++|.++...++.. ....+-||++.+ |++. ..|.......++.|||-++|.+. +.+.+..|.+.||+.
T Consensus 9 ~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~ 88 (156)
T cd08380 9 NLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSE 88 (156)
T ss_pred CeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEec
Confidence 47888888888764 234666777654 4442 24444444478999999999854 445567999999986
Q ss_pred C----CCeeeeEe
Q 010550 498 R----TGVIGACG 506 (507)
Q Consensus 498 ~----~~~iG~~~ 506 (507)
. +..||.+.
T Consensus 89 ~~~~~~~~iG~~~ 101 (156)
T cd08380 89 PGSKKEVPLGWVN 101 (156)
T ss_pred CCCCcceEEEEEe
Confidence 1 35788763
No 271
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=87.77 E-value=3.4 Score=33.57 Aligned_cols=73 Identities=21% Similarity=0.240 Sum_probs=46.1
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEE--cCccCC-ceeeeecCCCCCCeEeeEEEEEee---cCCCCeEEEEEEEcC
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK---EPESQILQLQVFDWD 338 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~---~~~~~~L~v~V~d~~ 338 (507)
+.+.+..+.+.........++-||.+.+ +++... ...|+.+.-...+.|||...|.+. -+....|.+++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4566666666654432223578888865 433321 224555555566899999888765 234678999999865
No 272
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=87.68 E-value=2.5 Score=38.25 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=45.2
Q ss_pred EEEEEEeeeecCCCCCC--CCcEEEEEE--cCeE---EEeeeecCCCCCcccceEEEEec--CCCCCceEEEEEEEC
Q 010550 430 LLSVLVQGAEDVEGENH--NNPYAIILY--KGDK---KRTKMIRKTRDPAWNEEFQFMLD--EPPLHEKIHIEVMSK 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~~~--~dPyv~v~~--~~~~---~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~~L~v~V~d~ 497 (507)
-++|+|+++.++..... ..-||++.+ |++. .+|+.+.-+.+|.|||-++|.+. +.+.+..|.+.||+.
T Consensus 11 ~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 11 KFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred CEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 37888888875433223 334555533 4432 26666666788999998888865 445566999999985
No 273
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=84.62 E-value=5.9 Score=32.14 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=45.3
Q ss_pred EEEEEeeeecCCCCC---CCCcEEEEEE--cCeE----EEeeeecCCCCCcccceEEEEec--CCCCCceEEEEEEEC
Q 010550 431 LSVLVQGAEDVEGEN---HNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFMLD--EPPLHEKIHIEVMSK 497 (507)
Q Consensus 431 L~V~v~~a~~L~~~~---~~dPyv~v~~--~~~~----~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~~L~v~V~d~ 497 (507)
+.+.+..+++.+... .++-||++.+ |++. ..|+.+.-...+.|||-++|.+. +-+.+..|.+.+|+.
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 556666777765431 2367888754 5443 25665555667999999888764 445566999999987
No 274
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=84.20 E-value=2.6 Score=37.55 Aligned_cols=61 Identities=13% Similarity=0.243 Sum_probs=42.9
Q ss_pred CCCcEEEEEE--cCeE----EEeeeecCCCCCcccceEEEEec--CCCCCceEEEEEEECC----CCeeeeEe
Q 010550 446 HNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFMLD--EPPLHEKIHIEVMSKR----TGVIGACG 506 (507)
Q Consensus 446 ~~dPyv~v~~--~~~~----~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~~L~v~V~d~~----~~~iG~~~ 506 (507)
.+|-||++.+ +++. ..|+.+.-+..+.|||-++|.|. +.+.+..|.|.|||.. ...+|.+.
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~ 101 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTT 101 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEE
Confidence 4677777755 4432 26666666778899999888865 4456679999999972 34777653
No 275
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=83.05 E-value=3.1 Score=41.72 Aligned_cols=76 Identities=14% Similarity=0.266 Sum_probs=62.2
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCC------CceEEEEEEEC-----CC
Q 010550 431 LSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL------HEKIHIEVMSK-----RT 499 (507)
Q Consensus 431 L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~------~~~L~v~V~d~-----~~ 499 (507)
+.|.|.+|++.+....-.-.+..+++++...|..+.++..|.||..+.+.+....+ +.+|.++++-- ..
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~r 81 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKR 81 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcc
Confidence 67889999999986566778999999999999999999999999999999875422 34788888643 66
Q ss_pred CeeeeEe
Q 010550 500 GVIGACG 506 (507)
Q Consensus 500 ~~iG~~~ 506 (507)
+.||.+.
T Consensus 82 e~iGyv~ 88 (340)
T PF12416_consen 82 ESIGYVV 88 (340)
T ss_pred eeccEEE
Confidence 7888763
No 276
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=80.98 E-value=29 Score=31.70 Aligned_cols=106 Identities=14% Similarity=0.210 Sum_probs=60.7
Q ss_pred hcccCCccceecccccccccccCceE-EEEEEEEEeccccccCcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEe
Q 010550 239 GIYIWPQTYEIPILDASSVAIKKPVG-ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWN 315 (507)
Q Consensus 239 ~~~v~P~~~~~~l~~~~~~~~~~~~g-~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wn 315 (507)
..+|.|..+.++-.. ....++. .++|.+.+..+- ...|.-.++.+... .....|.+..++.+|.|.
T Consensus 4 ~LYVYP~~l~~~~~k----~~~kaRNI~V~V~lrd~D~~-------~~~~l~~I~~g~g~~~~~~~~s~V~yh~k~P~f~ 72 (185)
T cd08697 4 HLYVYPLHLKYDSQK----TFAKARNIAVCIEFRDSDEE-------DAKPLKCIYYGPGGGFTTSAYAAVLHHNQNPEFY 72 (185)
T ss_pred eEEEcccEEEecccc----cccccccEEEEEEEEeCCCC-------cCccceEEecCCCCCcceEEEEEEEEcCCCCccc
Confidence 457788877755221 1112222 355665554321 11222222222211 234578888899999999
Q ss_pred eEEEEEeec--CCCCeEEEEEEEcCCC--C-------CCCeeEEEEEECcc
Q 010550 316 ENFKLVVKE--PESQILQLQVFDWDKV--G-------GHDRLGMQLVPLKL 355 (507)
Q Consensus 316 e~f~f~v~~--~~~~~L~v~V~d~~~~--~-------~d~~lG~~~i~l~~ 355 (507)
|++.+.+.- .....|.|+.|+.+-. . ....+|.+.+||-.
T Consensus 73 dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 73 DEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 999888753 2356799999986521 1 12457888887755
No 277
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=78.29 E-value=5.1 Score=44.57 Aligned_cols=107 Identities=15% Similarity=0.204 Sum_probs=76.5
Q ss_pred CCcEEEEEEcCccCCceeeeecCCC-CCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceE
Q 010550 285 SDPYVKLSLTGEKLPWKKTTVKKKN-LNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKE 363 (507)
Q Consensus 285 ~dpyv~v~l~~~~~~~~~T~v~~~t-~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~ 363 (507)
.++|+.+.+....+ .+|....+. .+|.|++.|........ ..+.+.+-+.+..+....+|.+.++...+..+....
T Consensus 138 ~e~Ylt~~l~~~~~--~~t~~~~~f~e~s~~~f~~~~~~~h~~-g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLHKARY--RRTHVIYEFLENSRWSFSFDIGFAHKA-GYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG 214 (887)
T ss_pred ccchheeeechhhh--hchhhhhcccccchhhhhccccccccc-cEEEEeecCCccccceeEEEEeccchhhhhcccccc
Confidence 58999999886654 456666665 88999999988876643 578888888877775789999999999999876666
Q ss_pred EEEeccccccCCCCCCCccceEEEEEEEEEeccCC
Q 010550 364 FTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (507)
Q Consensus 364 ~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~ 398 (507)
.+++++..- . ......-.+.+++.|.+...+
T Consensus 215 ~~~~Il~~d-~---~~~~~~~~~~~~~~~~~~~~~ 245 (887)
T KOG1329|consen 215 GWFPILDND-G---KPHQKGSNESLRLGFTPMEKD 245 (887)
T ss_pred ceeeeeccC-C---ccccCCcccceEEeeEeechh
Confidence 677664321 1 111223356677888887653
No 278
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=76.83 E-value=11 Score=29.89 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=35.6
Q ss_pred CCcEEEEEEcCeEE-EeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC
Q 010550 447 NNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK 497 (507)
Q Consensus 447 ~dPyv~v~~~~~~~-kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~ 497 (507)
++-.+.+.+.++.. +|..... .+..|++.|.+.+... ..|.|+|+-+
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdRs---RELEI~Vywr 56 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELERS---RELEIAVYWR 56 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccceeEEEeecc---cEEEEEEEEe
Confidence 56678888877543 7766544 6888999999998764 6899999754
No 279
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=75.93 E-value=14 Score=33.30 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=47.7
Q ss_pred eEEEEEEeeeecCCCC---CCCCcEEEEEE--cCeEE----Eeeeec----CCCCCcccceEEEEec--CCCCCceEEEE
Q 010550 429 GLLSVLVQGAEDVEGE---NHNNPYAIILY--KGDKK----RTKMIR----KTRDPAWNEEFQFMLD--EPPLHEKIHIE 493 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~---~~~dPyv~v~~--~~~~~----kT~v~~----~t~nP~wnE~f~f~v~--~~~~~~~L~v~ 493 (507)
..+.|+|.++.+++.. ...|-||++.+ |++.. .|+... ....+.|||-++|.+. +.+.+..|.+.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 4588999999999863 25777888755 54432 444322 2346779998888864 44556699999
Q ss_pred EEEC
Q 010550 494 VMSK 497 (507)
Q Consensus 494 V~d~ 497 (507)
+|+.
T Consensus 88 l~~~ 91 (171)
T cd04012 88 LYGT 91 (171)
T ss_pred EEEE
Confidence 9986
No 280
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=75.80 E-value=6.3 Score=34.20 Aligned_cols=46 Identities=15% Similarity=0.377 Sum_probs=32.0
Q ss_pred EeeeecCC-CCCcccceEEEEe--cCCCCCceEEEEEEEC----CC----CeeeeEe
Q 010550 461 RTKMIRKT-RDPAWNEEFQFML--DEPPLHEKIHIEVMSK----RT----GVIGACG 506 (507)
Q Consensus 461 kT~v~~~t-~nP~wnE~f~f~v--~~~~~~~~L~v~V~d~----~~----~~iG~~~ 506 (507)
.|+.+.-+ .++.|||.++|.+ .+-+.+..|.++|++. .+ ..||.+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n 79 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVN 79 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEE
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEE
Confidence 66666666 8999999888875 4556677999999976 22 4777763
No 281
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=74.77 E-value=16 Score=30.03 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=43.9
Q ss_pred eeeeecCCCCCCeEeeEEEEEeecC-------CCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCc--eEEEEecccc
Q 010550 301 KKTTVKKKNLNPEWNENFKLVVKEP-------ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHET--KEFTLDLLKH 371 (507)
Q Consensus 301 ~~T~v~~~t~nP~Wne~f~f~v~~~-------~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~--~~~~~~l~~~ 371 (507)
..|.++. +.+|.+|-+-.+.|... .+..+.++++..- ....+.+|.+.+++..+.+... ......+...
T Consensus 13 q~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~~~i~~~~~l~g~ 90 (107)
T PF11618_consen 13 QTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESNGERIHGSATLVGV 90 (107)
T ss_dssp EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S--EEEEEEE-BS
T ss_pred eccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCCCceEEEEEEEecc
Confidence 5677766 78999998888887632 2567999999865 2345689999999999985443 2233333211
Q ss_pred ccCCCCCCCccceEEEEEEEEE
Q 010550 372 TNISDPKDMKQRGKIVVELTYV 393 (507)
Q Consensus 372 ~~~~~~~~~~~~G~i~l~l~~~ 393 (507)
++..-|.|.+.++..
T Consensus 91 -------~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 91 -------SGEDFGTLEYWIRLR 105 (107)
T ss_dssp -------SS-TSEEEEEEEEEE
T ss_pred -------CCCeEEEEEEEEEec
Confidence 234678888777643
No 282
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=74.77 E-value=2.6 Score=27.84 Aligned_cols=14 Identities=29% Similarity=0.821 Sum_probs=9.8
Q ss_pred HHHHHhhheeeccC
Q 010550 22 LLVGFFLFIYSKPN 35 (507)
Q Consensus 22 ~~~~~~~~~~~~~~ 35 (507)
++++++++.|||+.
T Consensus 26 ~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 26 IVLGAFLFFWYRRK 39 (40)
T ss_pred HHHHHHhheEEecc
Confidence 45577788888764
No 283
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=74.39 E-value=13 Score=33.43 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=42.4
Q ss_pred CCCcEEEEEEcCeEE-Eeeeec--CCCCCcccceEEEEecCCCCCceEEEEEEEC---CCCeeeeE
Q 010550 446 HNNPYAIILYKGDKK-RTKMIR--KTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGVIGAC 505 (507)
Q Consensus 446 ~~dPyv~v~~~~~~~-kT~v~~--~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~iG~~ 505 (507)
...=|+++.++++.. +|+... ....=.|||.|.+.+... .++|.|+||.. .+..|+++
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~--Pesi~l~i~E~~~~~~~~la~v 99 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRW--PESIKLEIYEKSGLSDRLLAEV 99 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecC--CCEEEEEEEEccCccceEEEEE
Confidence 356699999999865 554433 344445899999999876 48999999988 56666665
No 284
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=73.88 E-value=9.7 Score=34.50 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=39.0
Q ss_pred eeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEEEcCCC-----CCCCeeEEEEEECcc
Q 010550 301 KKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKV-----GGHDRLGMQLVPLKL 355 (507)
Q Consensus 301 ~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~d~~~~-----~~d~~lG~~~i~l~~ 355 (507)
++|.+..+ .+|.|+|++.+.+... ....|.|++|+...- .....+|.+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 9999999999988633 367899999987632 234578999988875
No 285
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=72.68 E-value=7.4 Score=37.92 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=51.6
Q ss_pred CCCceEEEEEEeeeecCCC----CC-CCCcEEEEEEcCeEE-EeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC
Q 010550 425 LSGAGLLSVLVQGAEDVEG----EN-HNNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK 497 (507)
Q Consensus 425 ~~~~g~L~V~v~~a~~L~~----~~-~~dPyv~v~~~~~~~-kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~ 497 (507)
...+|+|++.+..+++|.- +| .-+-|+.+....+.+ +|.+.....--.|.|.|+..+... +.+++-||.+
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~---~vl~~lvySW 122 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI---EVLHYLVYSW 122 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc---eeeeEEEeec
Confidence 3468999999999999963 22 467788888866543 666655555556999999877653 6788888876
No 286
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=72.57 E-value=1.6 Score=34.35 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=42.9
Q ss_pred cCCchhHhhhCCCCCCceeCCCCcchHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 010550 49 ELDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPI 103 (507)
Q Consensus 49 ~~~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~~~Wp~~~~~~~~~i~~~~~~~ 103 (507)
+.|.+-++--|++||+|+.-.|.-.-.-.|.+....|.+.+.+++-.=..++.++
T Consensus 26 k~D~kf~~VKLGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~Pv~~gsi~~i 80 (108)
T KOG4092|consen 26 KKDKKFLEVKLGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYINPVKKGSISGI 80 (108)
T ss_pred cccceeeeeeecccHHHHHhccCChHHHHHHHHHHHHHHHhheechhhcCchhHH
Confidence 5566666667899999999999999999999999999999888863323334443
No 287
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=69.22 E-value=15 Score=33.37 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=40.7
Q ss_pred ceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEEEcCCCCC------CCeeEEEEEECcc
Q 010550 300 WKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGG------HDRLGMQLVPLKL 355 (507)
Q Consensus 300 ~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~d~~~~~~------d~~lG~~~i~l~~ 355 (507)
...|.|...+.+|.|+|++.+.+... ....|.|+.|+.+.-.+ ...+|.+.+||-+
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 45788889999999999999887633 35679999998543211 2457887777754
No 288
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=68.60 E-value=9.4 Score=34.89 Aligned_cols=39 Identities=15% Similarity=0.352 Sum_probs=30.1
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCCCc-eEEEEEEEC
Q 010550 459 KKRTKMIRKTRDPAWNEEFQFMLDEPPLHE-KIHIEVMSK 497 (507)
Q Consensus 459 ~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~-~L~v~V~d~ 497 (507)
..+|.+..++.+|.|+|++...++...... -|.++++..
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~ 93 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHC 93 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEe
Confidence 458999999999999999999988653333 677766543
No 289
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=64.16 E-value=5.6 Score=44.05 Aligned_cols=74 Identities=24% Similarity=0.243 Sum_probs=56.1
Q ss_pred cccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcC--ccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEE
Q 010550 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF 335 (507)
Q Consensus 258 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~ 335 (507)
..+...|.+.+.+++|..+... ..-||...+.. ....+.+|.++.+|..|.||++|+..+.. .+.+++..+
T Consensus 753 eSpl~ygflh~~vhsat~lkqs-----~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ 825 (1112)
T KOG4269|consen 753 ESPLLYGFLHVIVHSATGLKQS-----RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKT 825 (1112)
T ss_pred cCcccccceeeeeccccccccc-----cceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchhhh
Confidence 5667789999999999988643 46788776642 22345689999999999999999888753 466667777
Q ss_pred EcC
Q 010550 336 DWD 338 (507)
Q Consensus 336 d~~ 338 (507)
+.+
T Consensus 826 ek~ 828 (1112)
T KOG4269|consen 826 EKS 828 (1112)
T ss_pred ccc
Confidence 655
No 290
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=62.27 E-value=13 Score=33.93 Aligned_cols=39 Identities=10% Similarity=0.241 Sum_probs=24.4
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC
Q 010550 459 KKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK 497 (507)
Q Consensus 459 ~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~ 497 (507)
...|.+..++.+|.|+|+|...++..... .-|.+++++-
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~ 99 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHV 99 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEee
Confidence 45888899999999999999999876332 3788888876
No 291
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=60.78 E-value=16 Score=33.48 Aligned_cols=39 Identities=10% Similarity=0.344 Sum_probs=30.7
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCCCc-eEEEEEEEC
Q 010550 459 KKRTKMIRKTRDPAWNEEFQFMLDEPPLHE-KIHIEVMSK 497 (507)
Q Consensus 459 ~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~-~L~v~V~d~ 497 (507)
..+|.|..++.+|.|+|++...++...... -|.++++..
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~ 93 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHR 93 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEee
Confidence 568999999999999999999987653333 677887553
No 292
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=50.29 E-value=5.6 Score=43.52 Aligned_cols=91 Identities=21% Similarity=0.361 Sum_probs=69.8
Q ss_pred cchHHHHHHHHhhchhHHHH--HHHHHHHHHHHHHhhc-cCCceeeeEEEeEeeCCCCCCeEeeEEEEec-CCCeEEEee
Q 010550 72 ERVDWLNRFLSDMWPYLDKA--ICANVRTTAQPIFDEY-SGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEP 147 (507)
Q Consensus 72 E~~~WlN~~l~~~Wp~~~~~--~~~~i~~~~~~~l~~~-~p~~~l~~i~~~~~~lG~~~P~i~~ir~~~~-~~~~~~le~ 147 (507)
+..-|||.++.++.--+.+. ..+.+.+.++.++... .|++ ++.+--.+++-|..||.|++.++... ..+..-++.
T Consensus 334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~-~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~ 412 (795)
T KOG2238|consen 334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSY-IEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEI 412 (795)
T ss_pred hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchh-hhhhhhhhhhhcCCccccccceeEEeeccccccCcc
Confidence 45689999999997654433 4556666677776664 5887 89999999999999999999999875 445567788
Q ss_pred eeeEeCCCcEEEEEEE
Q 010550 148 ALRWAGNPNIVLVLKL 163 (507)
Q Consensus 148 ~~~~~~~~~i~l~~~~ 163 (507)
++.|.||-.+.+..++
T Consensus 413 di~y~~d~~~~i~~~v 428 (795)
T KOG2238|consen 413 DIEYRGDLTIIIETRV 428 (795)
T ss_pred ceeecccccccccccc
Confidence 9999998776665543
No 293
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=49.60 E-value=31 Score=38.57 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=45.8
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEc----Ce----EEEeeeecCCCCCcccceEEEEecCC--CCCceEEEEEEE
Q 010550 429 GLLSVLVQGAEDVEGENHNNPYAIILYK----GD----KKRTKMIRKTRDPAWNEEFQFMLDEP--PLHEKIHIEVMS 496 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~~~~dPyv~v~~~----~~----~~kT~v~~~t~nP~wnE~f~f~v~~~--~~~~~L~v~V~d 496 (507)
.-++++++++.+.......|-+|.|..+ ++ ++.|+.+....+|.||+..+|.+.-. |....|-+.|+-
T Consensus 343 ~~frI~l~~is~~n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred CceEEEEeeccccCCCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 3588888888876554455666666653 33 24666677789999999988887644 334466666653
No 294
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=48.58 E-value=42 Score=30.45 Aligned_cols=40 Identities=10% Similarity=0.188 Sum_probs=31.0
Q ss_pred eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC
Q 010550 458 DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK 497 (507)
Q Consensus 458 ~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~ 497 (507)
....|.|..++.+|.|+|++...++..... .-|.+++++-
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hv 94 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHI 94 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEe
Confidence 345899999999999999999998865332 2677777763
No 295
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.31 E-value=2e+02 Score=25.37 Aligned_cols=75 Identities=23% Similarity=0.202 Sum_probs=45.1
Q ss_pred cCCCCCcEEEEEEc--C--------ccCCceeeeecCCCCCC-eEeeEEEEEeec--CC-CCeEEEEEEEcCCCCCCCee
Q 010550 281 FLGTSDPYVKLSLT--G--------EKLPWKKTTVKKKNLNP-EWNENFKLVVKE--PE-SQILQLQVFDWDKVGGHDRL 346 (507)
Q Consensus 281 ~~g~~dpyv~v~l~--~--------~~~~~~~T~v~~~t~nP-~Wne~f~f~v~~--~~-~~~L~v~V~d~~~~~~d~~l 346 (507)
+.-.+|-||+.+.- + +.-.+..+.-.++-.|| +||--++..... +- -..|.+.||..|..++|...
T Consensus 22 FPe~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~ 101 (187)
T KOG4027|consen 22 FPEESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVT 101 (187)
T ss_pred cCCCCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceee
Confidence 34567888888762 1 11111112222344444 578655554442 21 35789999999999999999
Q ss_pred EEEEEECcc
Q 010550 347 GMQLVPLKL 355 (507)
Q Consensus 347 G~~~i~l~~ 355 (507)
|...+.+-.
T Consensus 102 GYg~~hiP~ 110 (187)
T KOG4027|consen 102 GYGMLHIPT 110 (187)
T ss_pred eeeeEecCc
Confidence 988876643
No 296
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=45.57 E-value=16 Score=29.76 Aligned_cols=44 Identities=27% Similarity=0.371 Sum_probs=35.6
Q ss_pred CCchhHhhhCCCCCCceeCCCCcchHHHHHHHHhhchhHHHHHH
Q 010550 50 LDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAIC 93 (507)
Q Consensus 50 ~~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~~~Wp~~~~~~~ 93 (507)
.|..-++--|++||+|+.-.|..-...++.+-...|.+..+++.
T Consensus 27 ~Dt~l~dVKLgELpsW~~rRd~sP~~~~~a~sR~~wry~~KYi~ 70 (104)
T PF10206_consen 27 KDTPLMDVKLGELPSWLSRRDKSPSGIAGAFSRGYWRYQHKYIN 70 (104)
T ss_pred CCCchhheecchhHHHHhhccCCHHHHHHHHHHHHHHHHHhhhc
Confidence 33333334567999999999999999999999999998888774
No 297
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.88 E-value=5.5 Score=43.09 Aligned_cols=69 Identities=14% Similarity=0.057 Sum_probs=45.1
Q ss_pred CCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECccc
Q 010550 284 TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356 (507)
Q Consensus 284 ~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l 356 (507)
..|||+.+.+.-... ..+.+...+..|.|+|+|...+.. ...+.+.|+.......+.+...+++..+++
T Consensus 27 al~~y~~v~vk~~~~--~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~ 95 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQG--AENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQ 95 (694)
T ss_pred hhhhhheeccceeec--ccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHH
Confidence 457888887753322 234456789999999999999764 467889999876444444444444333333
No 298
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=40.83 E-value=66 Score=29.37 Aligned_cols=40 Identities=8% Similarity=0.214 Sum_probs=30.7
Q ss_pred eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC
Q 010550 458 DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK 497 (507)
Q Consensus 458 ~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~ 497 (507)
....|.|..++.+|.|.|++...++..... .-|.++.++-
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHv 96 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHV 96 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEee
Confidence 345889999999999999999988765322 2677777764
No 299
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=37.40 E-value=5.9 Score=42.24 Aligned_cols=53 Identities=8% Similarity=0.028 Sum_probs=38.2
Q ss_pred CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC
Q 010550 445 NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK 497 (507)
Q Consensus 445 ~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~ 497 (507)
-..||+..+.+|..-.++.+-....+|.+++.=.+.+.+-..+-.+.+.+.++
T Consensus 409 ~em~~~~~~~vG~~~~s~sie~~v~~~~c~~~~~~s~~d~~~~fk~sf~~~~~ 461 (975)
T KOG2419|consen 409 YEMDPFIVIVVGSRFFSCSIEDPVETEECFAKRILSIVDYEEDFKLSFSEFSD 461 (975)
T ss_pred cccCchhHhhhhhHHhhhhhhccccchhhhhhhcccccccccCceEeeehHHH
Confidence 36899999999888888888888888888875555555543344666666654
No 300
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=36.79 E-value=58 Score=29.41 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=26.7
Q ss_pred EeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC
Q 010550 461 RTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK 497 (507)
Q Consensus 461 kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~ 497 (507)
-|+++....+|.|+|+|...++.... ..-|.+++++-
T Consensus 55 ~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv 92 (178)
T cd08679 55 YTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHV 92 (178)
T ss_pred EEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEcc
Confidence 44455555999999999999966532 33788888775
No 301
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=35.60 E-value=1.6e+02 Score=33.32 Aligned_cols=71 Identities=24% Similarity=0.215 Sum_probs=45.2
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEE----cCccCCc-eeeeecCCCCCCeEeeEEEEEee--c-CCCCeEEEEEE
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL----TGEKLPW-KKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVF 335 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l----~~~~~~~-~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~V~ 335 (507)
..++|+++++.++.. ....|-+|.|.. |++..-+ ..|.-+..+.+|.||+..+|.+. + |....|.+.||
T Consensus 343 ~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred CceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeee
Confidence 357788888776532 234466666554 3333322 34555566889999998888775 2 34667888888
Q ss_pred Ec
Q 010550 336 DW 337 (507)
Q Consensus 336 d~ 337 (507)
.-
T Consensus 420 ~v 421 (1076)
T KOG0904|consen 420 AV 421 (1076)
T ss_pred Ee
Confidence 64
No 302
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=34.53 E-value=13 Score=25.79 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=11.9
Q ss_pred hhHHHHHHHhhheeeccCCc
Q 010550 18 LPLGLLVGFFLFIYSKPNDD 37 (507)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~ 37 (507)
+++++.+|++.|.|++++++
T Consensus 17 ~~~~~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 17 LFFVFFIGIVIWAYRPRNKK 36 (49)
T ss_pred HHHHHHHHHHHHHHcccchh
Confidence 33445567777777765543
No 303
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.78 E-value=39 Score=36.83 Aligned_cols=49 Identities=20% Similarity=0.191 Sum_probs=38.2
Q ss_pred CCCcEEEEEEcCeEE-EeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC
Q 010550 446 HNNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK 497 (507)
Q Consensus 446 ~~dPyv~v~~~~~~~-kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~ 497 (507)
..+||+.+.+.-+.- ++.+.+.+.+|.|+|+|...+... ..+.|.|+.+
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~---~~~~i~v~~~ 76 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAG---GAKNIIVLLK 76 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeecC---CceEEEEEec
Confidence 478999988865543 666688899999999999997654 5688888766
No 304
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=30.81 E-value=21 Score=27.85 Aligned_cols=40 Identities=10% Similarity=0.195 Sum_probs=17.7
Q ss_pred hhcccccchhHHHHHHHhhheeec--cCCccccccccccccc
Q 010550 10 VLGFGFIGLPLGLLVGFFLFIYSK--PNDDQVEEPLVTPLCE 49 (507)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 49 (507)
+-|++.+|+++.+++-....+|+. ..|||++.++-|+.--
T Consensus 30 ~~~Lgm~~lvI~~iFil~VilwfvCC~kRkrsRrPIYrPvI~ 71 (94)
T PF05393_consen 30 WPNLGMWFLVICGIFILLVILWFVCCKKRKRSRRPIYRPVIG 71 (94)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccc
Confidence 345565555554332112222332 2233355666666644
No 305
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=30.64 E-value=3.3e+02 Score=23.02 Aligned_cols=76 Identities=16% Similarity=0.261 Sum_probs=45.9
Q ss_pred EEEEEEeeeecCCCCCCCCcEEEEEEcCeE---EEeee-ecCCCCCcccceEEEEecCC---C---CC-ceEEEEEEEC-
Q 010550 430 LLSVLVQGAEDVEGENHNNPYAIILYKGDK---KRTKM-IRKTRDPAWNEEFQFMLDEP---P---LH-EKIHIEVMSK- 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~---~kT~v-~~~t~nP~wnE~f~f~v~~~---~---~~-~~L~v~V~d~- 497 (507)
.+.+.+++..+++. ....-||+...++.. .+|.. .-.+..-.|||.|.+.+..- . .. ..+.+.|+..
T Consensus 8 ~~~l~i~~l~~~p~-~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~ 86 (143)
T PF10358_consen 8 QFDLTIHELENLPS-SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVD 86 (143)
T ss_pred EEEEEEEEeECcCC-CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEec
Confidence 47889999999887 223334444444443 24433 33456677999999987421 1 11 2677777765
Q ss_pred --CC-CeeeeEe
Q 010550 498 --RT-GVIGACG 506 (507)
Q Consensus 498 --~~-~~iG~~~ 506 (507)
+. ..+|.+.
T Consensus 87 ~~~~k~~lG~~~ 98 (143)
T PF10358_consen 87 GSGKKKVLGKVS 98 (143)
T ss_pred CCCccceEEEEE
Confidence 22 4788764
No 306
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=28.71 E-value=30 Score=30.26 Aligned_cols=10 Identities=30% Similarity=0.637 Sum_probs=4.3
Q ss_pred cchhHHHHHH
Q 010550 16 IGLPLGLLVG 25 (507)
Q Consensus 16 ~g~~~~~~~~ 25 (507)
+|+.+.|+++
T Consensus 56 VGVGg~ill~ 65 (154)
T PF04478_consen 56 VGVGGPILLG 65 (154)
T ss_pred ecccHHHHHH
Confidence 4444444443
No 307
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=28.28 E-value=24 Score=24.39 Aligned_cols=17 Identities=6% Similarity=0.331 Sum_probs=12.2
Q ss_pred HHHHHHhhheeeccCCc
Q 010550 21 GLLVGFFLFIYSKPNDD 37 (507)
Q Consensus 21 ~~~~~~~~~~~~~~~~~ 37 (507)
++.+|.++|.|+.++|+
T Consensus 21 ~~Figiv~wa~~p~~k~ 37 (48)
T cd01324 21 LFFLGVVVWAFRPGRKK 37 (48)
T ss_pred HHHHHHHHHHhCCCcch
Confidence 45668788888876654
No 308
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=28.05 E-value=4.3e+02 Score=23.46 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=50.8
Q ss_pred EEEEeccccccCcCCCCCcEEEEEEcC--c-----cCC-ceeeeecCC-----CCCCeEeeEEEEEee--cCC-CCeEEE
Q 010550 269 KVVRASKLLKKDFLGTSDPYVKLSLTG--E-----KLP-WKKTTVKKK-----NLNPEWNENFKLVVK--EPE-SQILQL 332 (507)
Q Consensus 269 ~v~~A~~L~~~d~~g~~dpyv~v~l~~--~-----~~~-~~~T~v~~~-----t~nP~Wne~f~f~v~--~~~-~~~L~v 332 (507)
.|.+|.+. ...+-||+..+.- . ... ...|.+... +..-.||.-|.+... ++. -..|.+
T Consensus 7 ~I~~a~~f------~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEGF------EEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEECC------CCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 45677654 3446788887731 1 111 234555432 334579987776655 322 368999
Q ss_pred EEEEcCCCCCCCeeEEEEEEC
Q 010550 333 QVFDWDKVGGHDRLGMQLVPL 353 (507)
Q Consensus 333 ~V~d~~~~~~d~~lG~~~i~l 353 (507)
+||..|..+++...|...+.|
T Consensus 81 ~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 81 QVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEcccCCeEEeEEeEEEe
Confidence 999999999999988776665
No 309
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=27.39 E-value=14 Score=39.62 Aligned_cols=69 Identities=17% Similarity=0.177 Sum_probs=50.2
Q ss_pred CceEEEEEEeeeecCCC------CC-CCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEE
Q 010550 427 GAGLLSVLVQGAEDVEG------EN-HNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMS 496 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~------~~-~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d 496 (507)
-+|+...+++.|.+++. ++ ..+|++..+++.+..+|+.-.++.+|+|||. +|...+-+.+..|...|.+
T Consensus 278 ~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~ 353 (975)
T KOG2419|consen 278 FTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVG 353 (975)
T ss_pred hhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhccc
Confidence 45566666677777643 12 5789999999999999999999999999997 6666655444445544443
No 310
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=27.13 E-value=3.9e+02 Score=27.86 Aligned_cols=58 Identities=10% Similarity=0.173 Sum_probs=30.3
Q ss_pred EEEEEEEEEecCCCCCCceeEEEEEcCCCceEEEEEEEcCcccccCcchHHHHHHHHHHHhhhcccCC
Q 010550 177 IFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGIYIWP 244 (507)
Q Consensus 177 ~~g~~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~~g~~i~~ip~l~~~~~~~i~~~l~~~~v~P 244 (507)
+.|++.+.-+|..+.. -+.+.+ -++||++..-+ .-.-...-+.+..|.+.|++.++.|
T Consensus 309 ~~G~i~l~G~P~yD~~--~~~l~l-----~dld~~~~t~~---~l~~~a~wl~~~~i~~~i~~~~~~~ 366 (427)
T PF14356_consen 309 LNGTIYLSGRPVYDPA--TQTLRL-----EDLDFDLDTKN---FLLKTAAWLLHGRIRKAIEEKLVFD 366 (427)
T ss_pred EEEEEEEEEEEEECCC--CCEEEE-----EeeEEEecccc---hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5555555555444421 122222 56777766432 1112233455778888888877655
No 311
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=25.31 E-value=6.5e+02 Score=26.09 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=36.7
Q ss_pred CeEEEEEEEcCC-----C-CCCCeeEEEEEECcccCC-CCc---eEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 328 QILQLQVFDWDK-----V-GGHDRLGMQLVPLKLLTP-HET---KEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 328 ~~L~v~V~d~~~-----~-~~d~~lG~~~i~l~~l~~-~~~---~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
..|+|.||.-.. + .+..+||.+.++|.--.. +++ +.-|..+-+... ........++|+.+.-.|
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~---~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQ---GSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCC---CCCCCCcceEEEEEeccC
Confidence 579999998432 2 355799999999973222 222 233554422110 011224678998887554
No 312
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=25.22 E-value=2.8e+02 Score=23.35 Aligned_cols=90 Identities=10% Similarity=0.142 Sum_probs=48.8
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeE-eeEEEEEee--cCCCCeEEEEEEEcCC-C
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEW-NENFKLVVK--EPESQILQLQVFDWDK-V 340 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~W-ne~f~f~v~--~~~~~~L~v~V~d~~~-~ 340 (507)
.|.++-+.-.++|.-+..+.+.||++++-++.... .|...... .... ...+.+.+. -+-...+.|++|+.+. .
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~--~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~ 81 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVF--STSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSS 81 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEE--ETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTE
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEE--Eeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcc
Confidence 34555555566666655678899999997765431 11111111 1111 112222222 1124578899998763 3
Q ss_pred CCCCeeEEEEEECcccC
Q 010550 341 GGHDRLGMQLVPLKLLT 357 (507)
Q Consensus 341 ~~d~~lG~~~i~l~~l~ 357 (507)
..++.+.++.+.-.-+.
T Consensus 82 ~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 82 MSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp CCCEEEEEEEEEGGGSB
T ss_pred cccCeEEEEEEeeeeee
Confidence 45567888887766665
No 313
>PRK11677 hypothetical protein; Provisional
Probab=25.02 E-value=32 Score=29.58 Aligned_cols=22 Identities=18% Similarity=0.511 Sum_probs=12.2
Q ss_pred hhhhhhcccccchhHHHHHHHhhheee
Q 010550 6 SVLGVLGFGFIGLPLGLLVGFFLFIYS 32 (507)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~~~~~ 32 (507)
|+++..| +++|+++|+++..+-
T Consensus 3 W~~a~i~-----livG~iiG~~~~R~~ 24 (134)
T PRK11677 3 WEYALIG-----LVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHH-----HHHHHHHHHHHHhhc
Confidence 6665544 555666666655443
No 314
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.67 E-value=30 Score=29.53 Aligned_cols=21 Identities=38% Similarity=0.773 Sum_probs=14.0
Q ss_pred ccchhHHHHHHHhhheeeccC
Q 010550 15 FIGLPLGLLVGFFLFIYSKPN 35 (507)
Q Consensus 15 ~~g~~~~~~~~~~~~~~~~~~ 35 (507)
++|+++|+++|+++..+..+.
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 356788888887766555443
No 315
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=23.22 E-value=52 Score=26.49 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=7.2
Q ss_pred HHHHHHhhheeecc
Q 010550 21 GLLVGFFLFIYSKP 34 (507)
Q Consensus 21 ~~~~~~~~~~~~~~ 34 (507)
+.++|+++|+++.|
T Consensus 80 ~~lv~~l~w~f~~r 93 (96)
T PTZ00382 80 GGLVGFLCWWFVCR 93 (96)
T ss_pred HHHHHHHhheeEEe
Confidence 34556556554443
No 316
>PRK00523 hypothetical protein; Provisional
Probab=22.94 E-value=29 Score=26.17 Aligned_cols=20 Identities=35% Similarity=0.668 Sum_probs=12.8
Q ss_pred hcccccchhHHHHHHHhhhe
Q 010550 11 LGFGFIGLPLGLLVGFFLFI 30 (507)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~~~ 30 (507)
++++++++.+|+++|+|+..
T Consensus 8 I~l~i~~li~G~~~Gffiar 27 (72)
T PRK00523 8 LGLGIPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555667777777766544
No 317
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=22.32 E-value=49 Score=37.10 Aligned_cols=67 Identities=27% Similarity=0.353 Sum_probs=48.5
Q ss_pred CCceEEEEEEeeeecCCCCCCCCcEEEEEEc-----CeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC
Q 010550 426 SGAGLLSVLVQGAEDVEGENHNNPYAIILYK-----GDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK 497 (507)
Q Consensus 426 ~~~g~L~V~v~~a~~L~~~~~~dPyv~v~~~-----~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~ 497 (507)
...|-+.+.+++|..+.. ..+-||..... ..+-+|+++.+|..|.||++|+..+... +++.++.+++
T Consensus 756 l~ygflh~~vhsat~lkq--s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s---qS~r~~~~ek 827 (1112)
T KOG4269|consen 756 LLYGFLHVIVHSATGLKQ--SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES---QSSRLEKTEK 827 (1112)
T ss_pred ccccceeeeecccccccc--ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc---cccchhhhcc
Confidence 355778899999887764 45567766542 2345999999999999999988876543 5566666554
No 318
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=21.34 E-value=25 Score=30.66 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=7.6
Q ss_pred CCcchHHHHHHHHhh
Q 010550 70 DYERVDWLNRFLSDM 84 (507)
Q Consensus 70 d~E~~~WlN~~l~~~ 84 (507)
+.+.+.=+|.+|++.
T Consensus 66 ~~~~~~~l~~LLKr~ 80 (146)
T PF14316_consen 66 DAEWLAALNELLKRV 80 (146)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344444455555554
No 319
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=21.00 E-value=8.7e+02 Score=24.50 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=66.1
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCe--EeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPE--WNENFKLVVKEPESQILQLQVFDWDKVG 341 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~--Wne~f~f~v~~~~~~~L~v~V~d~~~~~ 341 (507)
=.|-|.|.+-.++.. ....|+.+..|.... +|..+.-+..-. -.+.....+ .....+|++.+|-.. +.
T Consensus 58 F~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~---TT~~IpTsKK~RI~IqqRV~IkI-RQcDnTLkI~lfKKk-Lv 127 (508)
T PTZ00447 58 FYLLVKINEIFNINK-----YKHIYIIFSTDKYDF---TTDEIPTNKKNRIHIDQRVDIKI-RQCDETLRVDLFTTK-LT 127 (508)
T ss_pred eeEEEEehhhhcccc-----ceeEEEEEEcCceEE---EccccccCcCceEEEeeeeeeee-eecCceEEEEEEecc-cc
Confidence 456777777665533 346789988886553 443333222221 223333333 235678999999876 45
Q ss_pred CCCeeEEEEEECccc-C-CCCceEEEEeccccccCCCCCCCccceEEEEEEE
Q 010550 342 GHDRLGMQLVPLKLL-T-PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391 (507)
Q Consensus 342 ~d~~lG~~~i~l~~l-~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~ 391 (507)
+..-||...+.+..- . ..-++..|+.+.+ ++...++|.+++.
T Consensus 128 kk~hIgdI~InIn~dIIdk~FPKnkWy~c~k--------DGq~~cRIqLSFh 171 (508)
T PTZ00447 128 KKVHIGQIKIDINASVISKSFPKNEWFVCFK--------DGQEICKVQMSFY 171 (508)
T ss_pred ceeEEEEEEecccHHHHhccCCccceEEEec--------CCceeeeEEEEeh
Confidence 667899999998643 2 3335566666643 3566777777763
No 320
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=20.18 E-value=31 Score=23.33 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=11.6
Q ss_pred chhhhhhcccccchhHHH---HHHHhhheeec
Q 010550 5 SSVLGVLGFGFIGLPLGL---LVGFFLFIYSK 33 (507)
Q Consensus 5 s~~~~~~~~~~~g~~~~~---~~~~~~~~~~~ 33 (507)
||++ +||| +++.+ .+.+|.|..|+
T Consensus 7 s~L~--~~F~---~lIC~Fl~~~~~F~~F~~K 33 (54)
T PF06716_consen 7 SYLL--LAFG---FLICLFLFCLVVFIWFVYK 33 (54)
T ss_pred HHHH--HHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4555 5666 55443 23444554443
Done!