Query 010551
Match_columns 507
No_of_seqs 301 out of 2707
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 01:51:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02193 nitrile-specifier pro 100.0 8.6E-46 1.9E-50 376.7 39.4 313 3-331 137-468 (470)
2 PLN02153 epithiospecifier prot 100.0 4E-44 8.6E-49 352.1 37.3 307 10-331 4-339 (341)
3 KOG4693 Uncharacterized conser 100.0 1.6E-44 3.4E-49 314.8 24.2 293 14-318 3-312 (392)
4 KOG0379 Kelch repeat-containin 100.0 8.2E-40 1.8E-44 331.6 32.4 298 19-330 52-356 (482)
5 PLN02193 nitrile-specifier pro 100.0 1.2E-38 2.6E-43 324.3 34.3 291 28-340 111-419 (470)
6 KOG4441 Proteins containing BT 100.0 2.1E-39 4.6E-44 333.4 28.9 252 5-286 303-555 (571)
7 KOG4441 Proteins containing BT 100.0 4.1E-39 8.9E-44 331.3 29.8 283 24-342 272-557 (571)
8 PHA02713 hypothetical protein; 100.0 4.3E-39 9.4E-44 332.9 28.1 251 4-287 273-543 (557)
9 PLN02153 epithiospecifier prot 100.0 4.2E-38 9E-43 309.4 31.4 263 3-277 50-339 (341)
10 KOG4693 Uncharacterized conser 100.0 3.8E-39 8.3E-44 281.2 20.7 248 3-264 44-313 (392)
11 PHA02713 hypothetical protein; 100.0 2.9E-36 6.3E-41 311.9 31.0 267 39-343 259-545 (557)
12 KOG4152 Host cell transcriptio 100.0 7.6E-37 1.7E-41 288.4 21.5 303 12-331 16-363 (830)
13 PHA03098 kelch-like protein; P 100.0 8.7E-36 1.9E-40 311.2 29.4 252 7-289 268-523 (534)
14 KOG1230 Protein containing rep 100.0 2E-36 4.4E-41 279.2 20.9 247 23-284 62-347 (521)
15 TIGR03547 muta_rot_YjhT mutatr 100.0 1.4E-34 3E-39 285.6 31.6 271 23-329 3-344 (346)
16 TIGR03548 mutarot_permut cycli 100.0 3.2E-34 7E-39 279.9 30.0 263 26-318 2-313 (323)
17 KOG0379 Kelch repeat-containin 100.0 1.1E-34 2.3E-39 294.3 26.2 252 85-342 55-312 (482)
18 PRK14131 N-acetylneuraminic ac 100.0 6.3E-34 1.4E-38 282.8 29.6 283 14-335 18-372 (376)
19 TIGR03548 mutarot_permut cycli 100.0 1.2E-33 2.7E-38 275.8 27.2 236 4-264 40-314 (323)
20 PHA03098 kelch-like protein; P 100.0 3E-33 6.5E-38 292.1 29.9 265 38-340 251-520 (534)
21 TIGR03547 muta_rot_YjhT mutatr 100.0 9.3E-33 2E-37 272.5 27.6 245 3-275 29-344 (346)
22 PRK14131 N-acetylneuraminic ac 100.0 1.6E-32 3.5E-37 272.7 27.4 254 3-283 50-374 (376)
23 KOG1230 Protein containing rep 100.0 1.3E-32 2.8E-37 254.2 21.6 216 4-234 99-347 (521)
24 PHA02790 Kelch-like protein; P 100.0 9.6E-32 2.1E-36 274.5 29.5 211 33-284 267-477 (480)
25 KOG4152 Host cell transcriptio 100.0 1.2E-30 2.7E-35 246.6 18.7 259 6-276 60-362 (830)
26 PHA02790 Kelch-like protein; P 100.0 1.2E-29 2.6E-34 259.1 24.3 191 3-234 287-477 (480)
27 COG3055 Uncharacterized protei 99.8 1.3E-17 2.7E-22 153.4 23.1 273 23-332 32-375 (381)
28 COG3055 Uncharacterized protei 99.8 1.6E-17 3.5E-22 152.7 20.7 245 4-275 59-372 (381)
29 KOG2437 Muskelin [Signal trans 99.7 2.2E-19 4.9E-24 170.4 0.8 260 13-285 239-542 (723)
30 KOG2437 Muskelin [Signal trans 99.6 2.5E-15 5.5E-20 143.2 7.7 272 61-339 237-542 (723)
31 PF13964 Kelch_6: Kelch motif 99.2 3.9E-11 8.4E-16 81.8 6.3 50 90-142 1-50 (50)
32 PLN02772 guanylate kinase 99.2 1.9E-10 4.2E-15 110.8 12.0 93 135-229 18-110 (398)
33 PF13964 Kelch_6: Kelch motif 99.1 1.7E-10 3.6E-15 78.6 6.1 46 27-72 1-47 (50)
34 PLN02772 guanylate kinase 99.1 6.8E-10 1.5E-14 107.1 11.5 88 88-178 22-110 (398)
35 PF13415 Kelch_3: Galactose ox 99.0 1.1E-09 2.4E-14 74.1 6.1 48 151-201 1-49 (49)
36 PF01344 Kelch_1: Kelch motif; 99.0 1.5E-09 3.3E-14 72.9 5.5 44 90-133 1-44 (47)
37 PF13415 Kelch_3: Galactose ox 99.0 1.9E-09 4E-14 73.0 5.9 47 203-252 1-49 (49)
38 PF07646 Kelch_2: Kelch motif; 98.9 1.8E-09 3.9E-14 73.1 5.8 45 27-71 1-48 (49)
39 PF01344 Kelch_1: Kelch motif; 98.9 1.3E-09 2.8E-14 73.2 4.3 45 27-71 1-46 (47)
40 PF07646 Kelch_2: Kelch motif; 98.9 7.2E-09 1.6E-13 70.1 6.3 46 141-186 1-48 (49)
41 PF03089 RAG2: Recombination a 98.9 2E-07 4.3E-12 83.9 16.7 162 153-319 40-230 (337)
42 PF13418 Kelch_4: Galactose ox 98.8 3.6E-09 7.8E-14 71.7 4.2 47 90-139 1-48 (49)
43 PF03089 RAG2: Recombination a 98.8 1.6E-06 3.5E-11 78.2 20.6 140 85-226 16-189 (337)
44 PF13418 Kelch_4: Galactose ox 98.8 7.3E-09 1.6E-13 70.2 4.0 43 192-234 1-44 (49)
45 PF13854 Kelch_5: Kelch motif 98.8 1.7E-08 3.6E-13 65.6 5.3 40 24-63 1-42 (42)
46 PF07250 Glyoxal_oxid_N: Glyox 98.8 1.2E-06 2.6E-11 80.0 19.1 176 119-316 48-243 (243)
47 PF13854 Kelch_5: Kelch motif 98.7 5.7E-08 1.2E-12 63.1 5.6 41 138-178 1-42 (42)
48 smart00612 Kelch Kelch domain. 98.4 3.4E-07 7.3E-12 61.3 4.8 47 102-152 1-47 (47)
49 PF07250 Glyoxal_oxid_N: Glyox 98.4 3.1E-05 6.7E-10 70.8 17.1 144 54-231 47-201 (243)
50 smart00612 Kelch Kelch domain. 98.3 8.1E-07 1.8E-11 59.4 4.9 47 205-254 1-47 (47)
51 TIGR01640 F_box_assoc_1 F-box 98.3 0.00021 4.6E-09 66.1 22.2 199 3-229 14-230 (230)
52 TIGR01640 F_box_assoc_1 F-box 98.2 0.00042 9.1E-09 64.1 22.1 203 118-332 15-229 (230)
53 PRK11138 outer membrane biogen 97.8 0.033 7.1E-07 56.1 28.5 240 32-337 64-320 (394)
54 PF13360 PQQ_2: PQQ-like domai 97.7 0.038 8.2E-07 51.1 29.6 212 3-280 3-233 (238)
55 PRK11138 outer membrane biogen 97.6 0.09 2E-06 52.9 29.9 211 4-280 131-356 (394)
56 TIGR03300 assembly_YfgL outer 97.4 0.2 4.3E-06 50.1 29.5 183 35-280 143-341 (377)
57 cd00216 PQQ_DH Dehydrogenases 97.3 0.21 4.5E-06 51.9 26.0 131 29-184 53-193 (488)
58 PF09726 Macoilin: Transmembra 97.0 0.0048 1E-07 65.5 10.9 102 391-495 420-521 (697)
59 PF07893 DUF1668: Protein of u 97.0 0.24 5.3E-06 48.6 21.8 131 32-196 70-224 (342)
60 PF13360 PQQ_2: PQQ-like domai 96.9 0.32 6.9E-06 44.8 29.0 211 54-333 4-232 (238)
61 PF07893 DUF1668: Protein of u 96.9 0.45 9.8E-06 46.7 22.6 129 99-248 75-225 (342)
62 PF12768 Rax2: Cortical protei 96.8 0.055 1.2E-06 51.1 14.9 123 104-236 2-130 (281)
63 TIGR03300 assembly_YfgL outer 96.8 0.71 1.5E-05 46.1 29.6 194 31-283 59-267 (377)
64 TIGR03866 PQQ_ABC_repeats PQQ- 96.7 0.55 1.2E-05 44.6 27.0 186 39-281 2-191 (300)
65 TIGR02800 propeller_TolB tol-p 96.5 1.1 2.4E-05 45.4 25.4 148 53-235 214-362 (417)
66 PF08450 SGL: SMP-30/Gluconola 96.5 0.72 1.6E-05 42.9 20.5 200 37-285 11-221 (246)
67 PF07888 CALCOCO1: Calcium bin 96.5 0.14 3.1E-06 52.1 16.2 17 444-460 219-235 (546)
68 PF12718 Tropomyosin_1: Tropom 96.5 0.037 8.1E-07 46.5 10.2 74 411-484 22-95 (143)
69 PRK04043 tolB translocation pr 96.5 1.2 2.6E-05 45.1 25.3 196 53-289 213-412 (419)
70 PF12768 Rax2: Cortical protei 96.4 0.094 2E-06 49.5 13.6 113 166-286 14-130 (281)
71 KOG2055 WD40 repeat protein [G 96.3 0.15 3.2E-06 49.9 14.4 156 37-232 224-379 (514)
72 KOG0310 Conserved WD40 repeat- 96.3 1.1 2.4E-05 44.3 20.4 215 37-319 79-301 (487)
73 PF09726 Macoilin: Transmembra 96.1 0.04 8.7E-07 58.7 10.7 15 56-70 130-144 (697)
74 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.1 2.3 5E-05 44.5 23.9 128 31-184 63-199 (527)
75 PF08450 SGL: SMP-30/Gluconola 96.1 0.65 1.4E-05 43.2 17.7 189 4-234 23-220 (246)
76 PF04156 IncA: IncA protein; 96.0 0.16 3.4E-06 45.4 12.5 48 411-458 103-150 (191)
77 TIGR03866 PQQ_ABC_repeats PQQ- 95.9 1.6 3.4E-05 41.4 30.0 263 2-333 10-281 (300)
78 PRK05137 tolB translocation pr 95.9 2.4 5.1E-05 43.3 26.4 192 53-285 226-420 (435)
79 PF05096 Glu_cyclase_2: Glutam 95.9 1.1 2.4E-05 41.6 17.5 202 94-330 48-260 (264)
80 PF04111 APG6: Autophagy prote 95.8 0.07 1.5E-06 51.4 10.2 8 498-505 148-155 (314)
81 PF11559 ADIP: Afadin- and alp 95.8 0.26 5.7E-06 42.0 12.7 93 398-490 54-147 (151)
82 PRK04792 tolB translocation pr 95.8 2.6 5.7E-05 43.2 25.5 185 53-279 242-427 (448)
83 PRK10361 DNA recombination pro 95.8 0.16 3.5E-06 51.1 12.8 35 467-501 170-206 (475)
84 PTZ00421 coronin; Provisional 95.8 2.8 6.2E-05 43.3 27.3 62 101-179 138-201 (493)
85 PRK04922 tolB translocation pr 95.7 2.8 6.2E-05 42.7 26.0 189 53-285 228-419 (433)
86 PF02897 Peptidase_S9_N: Proly 95.7 0.75 1.6E-05 46.6 17.7 255 37-336 134-409 (414)
87 KOG0804 Cytoplasmic Zn-finger 95.7 0.19 4.2E-06 49.0 12.2 13 271-283 269-282 (493)
88 smart00787 Spc7 Spc7 kinetocho 95.6 0.22 4.7E-06 47.8 12.5 18 470-487 240-257 (312)
89 PRK11637 AmiB activator; Provi 95.6 0.093 2E-06 53.3 10.7 73 391-463 49-121 (428)
90 PF08317 Spc7: Spc7 kinetochor 95.6 0.2 4.3E-06 48.8 12.3 9 471-479 253-261 (325)
91 PRK04792 tolB translocation pr 95.6 3.3 7.2E-05 42.4 26.0 150 116-286 241-391 (448)
92 KOG2055 WD40 repeat protein [G 95.4 1 2.2E-05 44.4 16.0 150 100-280 224-377 (514)
93 COG4026 Uncharacterized protei 95.4 0.091 2E-06 46.0 8.1 73 407-479 132-208 (290)
94 PF10473 CENP-F_leu_zip: Leuci 95.3 0.62 1.4E-05 38.7 12.4 74 391-464 26-99 (140)
95 smart00787 Spc7 Spc7 kinetocho 95.3 0.4 8.6E-06 46.1 12.8 14 469-482 246-259 (312)
96 COG2433 Uncharacterized conser 95.2 0.19 4.2E-06 51.1 10.9 79 411-489 423-508 (652)
97 PRK00178 tolB translocation pr 95.2 4.3 9.4E-05 41.3 26.6 148 117-286 223-372 (430)
98 PRK05137 tolB translocation pr 95.1 4.4 9.6E-05 41.3 27.1 188 117-333 226-414 (435)
99 TIGR02800 propeller_TolB tol-p 95.1 4.4 9.6E-05 40.9 26.7 147 117-285 214-362 (417)
100 cd00216 PQQ_DH Dehydrogenases 95.0 5.1 0.00011 41.6 29.8 259 2-283 119-432 (488)
101 PTZ00420 coronin; Provisional 95.0 5.5 0.00012 41.9 22.0 61 101-179 138-200 (568)
102 KOG0995 Centromere-associated 95.0 0.19 4.1E-06 50.8 10.1 69 411-479 288-356 (581)
103 PF12217 End_beta_propel: Cata 95.0 2.7 5.9E-05 38.4 16.2 185 11-213 113-334 (367)
104 PF05096 Glu_cyclase_2: Glutam 94.9 2.2 4.7E-05 39.7 16.2 154 36-233 54-209 (264)
105 PF04111 APG6: Autophagy prote 94.9 0.25 5.5E-06 47.6 10.6 18 469-486 113-130 (314)
106 KOG1029 Endocytic adaptor prot 94.9 0.36 7.7E-06 50.3 11.9 26 391-416 326-351 (1118)
107 PF10282 Lactonase: Lactonase, 94.9 4.3 9.3E-05 40.0 23.0 278 5-336 17-329 (345)
108 KOG0804 Cytoplasmic Zn-finger 94.9 0.29 6.2E-06 47.9 10.6 31 424-454 368-398 (493)
109 PRK04922 tolB translocation pr 94.9 5.3 0.00011 40.8 24.9 146 116-285 227-376 (433)
110 PF04156 IncA: IncA protein; 94.8 0.45 9.7E-06 42.4 11.5 57 409-465 94-150 (191)
111 COG1579 Zn-ribbon protein, pos 94.8 0.49 1.1E-05 43.1 11.4 16 417-432 45-60 (239)
112 COG2433 Uncharacterized conser 94.8 0.41 8.9E-06 48.8 11.9 83 393-475 419-508 (652)
113 PF10473 CENP-F_leu_zip: Leuci 94.8 0.78 1.7E-05 38.1 11.6 51 409-459 51-101 (140)
114 cd00094 HX Hemopexin-like repe 94.8 2.8 6.1E-05 37.4 17.2 151 96-280 12-178 (194)
115 cd00094 HX Hemopexin-like repe 94.8 2.9 6.2E-05 37.3 17.0 159 146-334 11-178 (194)
116 PF13851 GAS: Growth-arrest sp 94.7 0.83 1.8E-05 40.9 12.7 39 402-440 47-85 (201)
117 COG4942 Membrane-bound metallo 94.7 0.63 1.4E-05 45.9 12.6 56 393-448 42-97 (420)
118 PRK11028 6-phosphogluconolacto 94.6 4.8 0.0001 39.2 25.0 238 39-331 3-258 (330)
119 KOG1853 LIS1-interacting prote 94.6 0.52 1.1E-05 42.3 10.6 10 442-451 109-118 (333)
120 PF10186 Atg14: UV radiation r 94.6 0.61 1.3E-05 44.9 12.6 52 411-462 57-108 (302)
121 PRK09039 hypothetical protein; 94.6 0.44 9.5E-06 46.6 11.4 43 418-460 124-166 (343)
122 PRK09039 hypothetical protein; 94.6 0.49 1.1E-05 46.3 11.7 33 433-465 125-157 (343)
123 PF14870 PSII_BNR: Photosynthe 94.6 4.6 9.9E-05 38.7 21.4 217 13-286 47-270 (302)
124 PRK00178 tolB translocation pr 94.5 6.4 0.00014 40.1 26.7 189 53-284 223-413 (430)
125 PF04849 HAP1_N: HAP1 N-termin 94.4 0.85 1.8E-05 43.0 12.3 49 417-465 206-254 (306)
126 PRK03629 tolB translocation pr 94.4 6.7 0.00014 40.0 26.0 149 117-286 223-372 (429)
127 PF10481 CENP-F_N: Cenp-F N-te 94.4 0.47 1E-05 43.2 10.1 98 391-488 20-128 (307)
128 TIGR03752 conj_TIGR03752 integ 94.3 0.25 5.4E-06 49.2 9.1 21 466-486 120-140 (472)
129 PF08614 ATG16: Autophagy prot 94.3 0.3 6.6E-06 43.6 9.0 55 411-465 96-150 (194)
130 KOG0250 DNA repair protein RAD 94.1 0.57 1.2E-05 51.2 11.9 27 434-460 397-423 (1074)
131 KOG0250 DNA repair protein RAD 94.1 0.45 9.8E-06 51.9 11.1 48 391-438 677-724 (1074)
132 PF06637 PV-1: PV-1 protein (P 94.0 0.49 1.1E-05 45.2 9.9 48 413-460 288-335 (442)
133 COG4026 Uncharacterized protei 94.0 0.31 6.6E-06 42.8 7.9 70 395-464 134-203 (290)
134 COG4946 Uncharacterized protei 93.9 7.5 0.00016 38.8 18.1 188 116-340 106-304 (668)
135 KOG0646 WD40 repeat protein [G 93.9 6.6 0.00014 38.9 17.4 43 168-215 198-240 (476)
136 PRK03629 tolB translocation pr 93.8 8.6 0.00019 39.2 26.4 189 53-285 223-414 (429)
137 COG4372 Uncharacterized protei 93.7 1.6 3.6E-05 41.8 12.7 73 391-463 90-169 (499)
138 PF09304 Cortex-I_coil: Cortex 93.7 2.6 5.7E-05 32.8 11.7 35 429-463 42-76 (107)
139 PF11932 DUF3450: Protein of u 93.7 1.4 3.1E-05 41.1 12.6 55 410-464 49-103 (251)
140 PF06785 UPF0242: Uncharacteri 93.7 0.71 1.5E-05 43.3 10.0 20 348-367 47-66 (401)
141 cd00200 WD40 WD40 domain, foun 93.6 5.9 0.00013 36.5 26.0 143 101-279 105-251 (289)
142 COG4257 Vgb Streptogramin lyas 93.5 6.3 0.00014 36.6 16.8 177 9-234 130-312 (353)
143 COG4942 Membrane-bound metallo 93.4 0.5 1.1E-05 46.5 9.1 66 400-465 42-107 (420)
144 PF12128 DUF3584: Protein of u 93.4 0.85 1.8E-05 52.8 12.6 57 390-446 601-657 (1201)
145 PF00769 ERM: Ezrin/radixin/mo 93.3 1.1 2.4E-05 41.5 11.1 11 469-479 103-113 (246)
146 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.3 2.7 5.8E-05 34.9 12.2 24 433-456 61-84 (132)
147 PF10498 IFT57: Intra-flagella 93.3 1.5 3.1E-05 43.1 12.2 47 385-431 216-262 (359)
148 KOG0995 Centromere-associated 93.2 0.7 1.5E-05 46.9 10.0 48 415-462 278-325 (581)
149 KOG0996 Structural maintenance 93.2 0.9 1.9E-05 50.0 11.4 32 466-497 444-475 (1293)
150 PF02897 Peptidase_S9_N: Proly 93.1 6.3 0.00014 39.9 17.4 148 116-284 251-411 (414)
151 PRK02889 tolB translocation pr 93.0 12 0.00025 38.2 26.1 183 53-279 220-405 (427)
152 PRK00409 recombination and DNA 92.9 1.1 2.4E-05 49.1 11.9 9 392-400 523-531 (782)
153 COG1322 Predicted nuclease of 92.9 1.7 3.7E-05 43.8 12.3 58 444-501 138-197 (448)
154 KOG4403 Cell surface glycoprot 92.9 0.57 1.2E-05 45.4 8.4 18 469-486 309-326 (575)
155 PF09730 BicD: Microtubule-ass 92.9 0.85 1.8E-05 48.5 10.5 62 389-450 34-95 (717)
156 COG4257 Vgb Streptogramin lyas 92.8 8 0.00017 35.9 21.0 221 7-286 87-314 (353)
157 KOG2129 Uncharacterized conser 92.8 1.1 2.3E-05 43.5 10.1 14 451-464 259-272 (552)
158 PRK04043 tolB translocation pr 92.7 13 0.00027 37.8 23.5 183 118-333 214-402 (419)
159 KOG0161 Myosin class II heavy 92.6 0.97 2.1E-05 53.4 11.4 13 4-16 116-128 (1930)
160 PRK13684 Ycf48-like protein; P 92.6 11 0.00024 36.9 23.6 156 96-286 137-297 (334)
161 PF11932 DUF3450: Protein of u 92.6 1.6 3.4E-05 40.9 11.1 33 432-464 64-96 (251)
162 PTZ00266 NIMA-related protein 92.6 1.5 3.2E-05 49.0 12.3 6 101-106 87-92 (1021)
163 PF06818 Fez1: Fez1; InterPro 92.5 2.5 5.4E-05 37.3 11.3 55 410-464 52-106 (202)
164 PF08581 Tup_N: Tup N-terminal 92.5 1.5 3.3E-05 32.4 8.5 69 405-479 6-74 (79)
165 PF06637 PV-1: PV-1 protein (P 92.5 2.7 5.8E-05 40.4 12.1 21 466-486 360-380 (442)
166 PF15035 Rootletin: Ciliary ro 92.4 1.1 2.3E-05 39.4 9.0 57 431-487 60-120 (182)
167 PRK15422 septal ring assembly 92.4 1.4 3E-05 32.1 7.8 29 408-436 16-44 (79)
168 PF00261 Tropomyosin: Tropomyo 92.4 0.97 2.1E-05 41.8 9.3 17 471-487 115-131 (237)
169 TIGR03752 conj_TIGR03752 integ 92.4 0.99 2.2E-05 45.1 9.7 23 466-488 113-135 (472)
170 PF08268 FBA_3: F-box associat 92.3 4.5 9.8E-05 33.3 12.5 87 97-185 2-89 (129)
171 TIGR02168 SMC_prok_B chromosom 92.3 1.3 2.7E-05 51.7 12.3 6 40-45 25-30 (1179)
172 PF02191 OLF: Olfactomedin-lik 92.3 9.7 0.00021 35.4 18.7 155 88-259 66-236 (250)
173 PF08268 FBA_3: F-box associat 92.2 4.2 9E-05 33.5 12.2 82 203-285 5-88 (129)
174 PRK13684 Ycf48-like protein; P 92.2 12 0.00027 36.5 19.3 197 13-261 119-321 (334)
175 PF12325 TMF_TATA_bd: TATA ele 92.2 2.7 5.9E-05 34.0 10.3 12 449-460 72-83 (120)
176 KOG1003 Actin filament-coating 92.1 4.3 9.3E-05 35.4 11.9 47 419-465 76-122 (205)
177 TIGR01069 mutS2 MutS2 family p 92.1 1.4 3E-05 48.2 11.4 8 496-503 626-633 (771)
178 PF00038 Filament: Intermediat 92.0 2.9 6.3E-05 40.5 12.7 66 419-484 211-284 (312)
179 PF14662 CCDC155: Coiled-coil 92.0 3.8 8.2E-05 35.7 11.5 36 392-427 18-53 (193)
180 PF00038 Filament: Intermediat 91.9 3.5 7.6E-05 39.9 13.2 27 436-462 221-247 (312)
181 TIGR01843 type_I_hlyD type I s 91.9 2.4 5.3E-05 43.0 12.6 11 474-484 251-261 (423)
182 KOG0971 Microtubule-associated 91.9 2 4.3E-05 45.9 11.5 33 463-495 326-358 (1243)
183 PRK11028 6-phosphogluconolacto 91.8 13 0.00029 36.1 27.8 60 2-69 11-74 (330)
184 COG1520 FOG: WD40-like repeat 91.8 15 0.00032 36.6 24.2 140 3-182 78-225 (370)
185 KOG0161 Myosin class II heavy 91.8 2 4.2E-05 51.0 12.6 22 466-487 1122-1143(1930)
186 PF09304 Cortex-I_coil: Cortex 91.7 5.2 0.00011 31.2 10.8 18 412-429 18-35 (107)
187 PRK02889 tolB translocation pr 91.7 17 0.00037 37.0 24.4 147 117-285 220-368 (427)
188 KOG2321 WD40 repeat protein [G 91.7 7.8 0.00017 39.6 14.9 75 190-280 131-208 (703)
189 KOG0249 LAR-interacting protei 91.6 0.64 1.4E-05 48.2 7.6 25 444-468 162-186 (916)
190 PF10168 Nup88: Nuclear pore c 91.6 2.5 5.3E-05 45.7 12.4 48 413-460 568-615 (717)
191 KOG0980 Actin-binding protein 91.5 1.9 4.1E-05 46.0 11.0 34 429-462 415-448 (980)
192 KOG1003 Actin filament-coating 91.5 5.7 0.00012 34.6 12.0 67 391-457 6-72 (205)
193 KOG0996 Structural maintenance 91.5 1.8 3.9E-05 47.7 11.1 7 205-211 128-134 (1293)
194 TIGR03007 pepcterm_ChnLen poly 91.4 1.7 3.7E-05 45.3 11.0 50 430-479 316-365 (498)
195 KOG1853 LIS1-interacting prote 91.4 4.6 0.0001 36.4 11.7 24 466-489 137-160 (333)
196 PF09755 DUF2046: Uncharacteri 91.4 4.3 9.4E-05 38.3 12.2 19 415-433 111-129 (310)
197 PF05384 DegS: Sensor protein 91.3 6.1 0.00013 33.7 12.1 40 391-430 8-47 (159)
198 KOG0980 Actin-binding protein 91.3 3.5 7.5E-05 44.2 12.6 11 178-188 175-185 (980)
199 PF13870 DUF4201: Domain of un 91.3 6.7 0.00015 34.4 13.0 20 469-488 152-171 (177)
200 KOG0971 Microtubule-associated 91.3 1.6 3.6E-05 46.5 10.2 40 421-460 400-439 (1243)
201 COG3883 Uncharacterized protei 91.3 0.92 2E-05 41.9 7.6 46 415-460 50-95 (265)
202 PF00261 Tropomyosin: Tropomyo 91.2 4 8.8E-05 37.7 12.0 21 466-486 194-214 (237)
203 PF10234 Cluap1: Clusterin-ass 91.1 4.5 9.9E-05 37.6 12.0 45 421-465 173-217 (267)
204 PRK11546 zraP zinc resistance 91.1 1.6 3.5E-05 36.3 8.1 25 419-443 56-80 (143)
205 TIGR03185 DNA_S_dndD DNA sulfu 91.1 1.6 3.6E-05 47.0 10.7 43 417-459 209-251 (650)
206 PRK01742 tolB translocation pr 91.0 20 0.00043 36.5 24.0 183 53-285 228-412 (429)
207 KOG2077 JNK/SAPK-associated pr 90.9 2.1 4.5E-05 43.3 10.1 17 488-504 434-450 (832)
208 COG1196 Smc Chromosome segrega 90.9 2.3 4.9E-05 49.2 12.1 6 496-501 514-519 (1163)
209 PF07058 Myosin_HC-like: Myosi 90.9 1.9 4.1E-05 40.1 9.0 69 420-488 3-85 (351)
210 TIGR01005 eps_transp_fam exopo 90.9 1.3 2.8E-05 48.8 9.9 78 412-489 318-403 (754)
211 PF10186 Atg14: UV radiation r 90.8 3.8 8.3E-05 39.3 12.1 34 412-445 72-105 (302)
212 COG1520 FOG: WD40-like repeat 90.7 19 0.00041 35.8 21.4 153 34-233 65-225 (370)
213 PRK09174 F0F1 ATP synthase sub 90.6 7.2 0.00016 35.0 12.6 47 391-437 79-125 (204)
214 cd00200 WD40 WD40 domain, foun 90.5 14 0.0003 33.9 24.6 146 100-280 62-210 (289)
215 PRK13454 F0F1 ATP synthase sub 90.5 7.8 0.00017 34.1 12.6 50 391-440 57-106 (181)
216 PF15070 GOLGA2L5: Putative go 90.4 3 6.6E-05 44.1 11.5 50 391-440 17-66 (617)
217 PF05384 DegS: Sensor protein 90.4 9.5 0.00021 32.6 12.4 15 478-492 142-156 (159)
218 TIGR03185 DNA_S_dndD DNA sulfu 90.2 3.1 6.8E-05 44.8 11.9 9 103-111 30-38 (650)
219 PF09738 DUF2051: Double stran 90.2 5.9 0.00013 37.8 12.2 52 412-463 114-165 (302)
220 PF11180 DUF2968: Protein of u 90.1 9.4 0.0002 33.3 12.2 32 466-500 158-189 (192)
221 PRK06231 F0F1 ATP synthase sub 90.1 8.2 0.00018 34.7 12.6 53 391-443 74-126 (205)
222 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.1 9.8 0.00021 31.5 12.5 18 444-461 65-82 (132)
223 PF10282 Lactonase: Lactonase, 90.1 20 0.00044 35.2 25.8 233 55-330 17-274 (345)
224 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.0 28 0.0006 36.6 22.6 202 4-231 80-337 (527)
225 KOG0999 Microtubule-associated 90.0 3.7 7.9E-05 41.5 10.8 56 395-450 113-168 (772)
226 COG3823 Glutamine cyclotransfe 89.8 14 0.00031 32.9 15.1 99 94-212 49-149 (262)
227 KOG0243 Kinesin-like protein [ 89.7 4.6 0.0001 44.5 12.3 31 411-441 442-472 (1041)
228 PF11180 DUF2968: Protein of u 89.7 4.8 0.0001 35.1 10.1 21 466-486 165-185 (192)
229 CHL00118 atpG ATP synthase CF0 89.7 11 0.00024 32.3 12.6 47 391-437 48-94 (156)
230 PF05911 DUF869: Plant protein 89.6 4.9 0.00011 43.5 12.3 42 391-432 598-639 (769)
231 PF09738 DUF2051: Double stran 89.5 2.7 5.8E-05 40.1 9.4 47 415-461 89-135 (302)
232 PF05335 DUF745: Protein of un 89.5 13 0.00028 32.8 12.9 96 391-486 69-168 (188)
233 PF15233 SYCE1: Synaptonemal c 89.4 10 0.00022 30.7 11.0 61 385-445 9-69 (134)
234 KOG0994 Extracellular matrix g 89.4 3.5 7.5E-05 45.5 10.9 30 395-424 1604-1633(1758)
235 PRK13453 F0F1 ATP synthase sub 89.3 11 0.00024 32.8 12.6 50 391-440 44-93 (173)
236 PF12128 DUF3584: Protein of u 89.3 3.8 8.2E-05 47.6 12.2 33 398-430 623-655 (1201)
237 PRK01742 tolB translocation pr 89.1 28 0.0006 35.4 21.8 140 117-285 228-369 (429)
238 KOG1937 Uncharacterized conser 89.1 3.7 8E-05 40.4 10.0 30 411-440 294-323 (521)
239 PF13088 BNR_2: BNR repeat-lik 89.0 16 0.00035 34.3 14.7 231 13-258 30-275 (275)
240 PF14662 CCDC155: Coiled-coil 89.0 8 0.00017 33.8 10.9 7 478-484 181-187 (193)
241 PF15066 CAGE1: Cancer-associa 89.0 6.2 0.00013 39.1 11.4 35 411-445 384-418 (527)
242 TIGR02658 TTQ_MADH_Hv methylam 88.9 25 0.00054 34.6 29.7 120 38-182 13-142 (352)
243 COG4946 Uncharacterized protei 88.9 27 0.00059 35.0 20.0 185 2-234 286-484 (668)
244 PRK14472 F0F1 ATP synthase sub 88.9 12 0.00027 32.6 12.6 49 391-439 44-92 (175)
245 PHA02562 46 endonuclease subun 88.9 4.6 9.9E-05 42.8 11.8 11 391-401 308-318 (562)
246 KOG0288 WD40 repeat protein Ti 88.9 8 0.00017 37.8 11.9 25 412-436 43-67 (459)
247 PF13863 DUF4200: Domain of un 88.8 12 0.00025 30.6 12.3 29 458-486 77-105 (126)
248 KOG0649 WD40 repeat protein [G 88.8 18 0.0004 32.9 14.8 139 128-288 100-246 (325)
249 CHL00019 atpF ATP synthase CF0 88.6 13 0.00027 32.9 12.6 48 391-438 50-97 (184)
250 KOG0646 WD40 repeat protein [G 88.5 28 0.00061 34.7 19.7 145 93-264 84-239 (476)
251 PF15619 Lebercilin: Ciliary p 88.5 12 0.00026 33.3 12.2 8 419-426 63-70 (194)
252 PRK09841 cryptic autophosphory 88.5 3.3 7.1E-05 45.3 10.5 30 450-479 351-380 (726)
253 PF12329 TMF_DNA_bd: TATA elem 88.5 3.4 7.3E-05 30.3 7.3 16 471-486 49-64 (74)
254 PF12777 MT: Microtubule-bindi 88.4 3.1 6.8E-05 40.9 9.5 30 410-439 15-44 (344)
255 KOG0163 Myosin class VI heavy 88.3 4 8.7E-05 42.9 10.1 10 100-109 215-224 (1259)
256 KOG0612 Rho-associated, coiled 88.2 5.2 0.00011 44.6 11.4 27 439-465 502-528 (1317)
257 PF14870 PSII_BNR: Photosynthe 88.2 25 0.00055 33.7 24.9 244 11-318 4-253 (302)
258 KOG0977 Nuclear envelope prote 88.2 6.8 0.00015 40.3 11.6 10 470-479 205-214 (546)
259 PRK13460 F0F1 ATP synthase sub 88.1 15 0.00032 32.0 12.6 49 391-439 42-90 (173)
260 PF10481 CENP-F_N: Cenp-F N-te 88.1 9.3 0.0002 35.1 11.2 16 466-481 113-128 (307)
261 PF09910 DUF2139: Uncharacteri 88.1 24 0.00051 33.3 16.6 136 52-211 77-222 (339)
262 PF12761 End3: Actin cytoskele 88.1 6.4 0.00014 34.6 9.9 6 326-331 38-43 (195)
263 PRK10780 periplasmic chaperone 88.0 7.9 0.00017 33.5 10.7 14 421-434 54-67 (165)
264 KOG2129 Uncharacterized conser 88.0 4.1 9E-05 39.6 9.4 14 471-484 255-268 (552)
265 PRK07352 F0F1 ATP synthase sub 87.9 15 0.00033 32.0 12.6 51 391-441 45-95 (174)
266 KOG1962 B-cell receptor-associ 87.9 3.6 7.8E-05 36.8 8.4 47 438-484 151-201 (216)
267 KOG1937 Uncharacterized conser 87.9 6.4 0.00014 38.9 10.7 29 458-486 399-427 (521)
268 PF09755 DUF2046: Uncharacteri 87.8 14 0.0003 35.1 12.6 35 444-478 112-151 (310)
269 PF14988 DUF4515: Domain of un 87.8 16 0.00034 32.9 12.6 67 419-485 49-123 (206)
270 PF14282 FlxA: FlxA-like prote 87.7 2.5 5.5E-05 33.5 6.8 15 448-462 54-68 (106)
271 KOG0933 Structural maintenance 87.5 8.2 0.00018 42.2 12.1 7 312-318 660-666 (1174)
272 PF10234 Cluap1: Clusterin-ass 87.5 6.9 0.00015 36.5 10.4 46 406-451 172-217 (267)
273 KOG3850 Predicted membrane pro 87.5 6.5 0.00014 37.9 10.2 26 467-492 351-376 (455)
274 TIGR02680 conserved hypothetic 87.4 4.9 0.00011 47.2 11.6 38 421-458 280-317 (1353)
275 PF10168 Nup88: Nuclear pore c 87.3 8.5 0.00019 41.7 12.5 10 36-45 40-49 (717)
276 TIGR03017 EpsF chain length de 87.2 4.8 0.0001 41.2 10.5 59 444-503 317-382 (444)
277 PRK03947 prefoldin subunit alp 87.2 10 0.00023 31.7 10.7 23 466-488 112-134 (140)
278 PF07889 DUF1664: Protein of u 87.1 14 0.00029 30.2 10.6 22 440-461 77-98 (126)
279 PF03962 Mnd1: Mnd1 family; I 86.9 3.4 7.3E-05 36.6 7.8 8 453-460 118-125 (188)
280 KOG0964 Structural maintenance 86.9 8.2 0.00018 42.0 11.6 21 466-486 353-373 (1200)
281 PF09789 DUF2353: Uncharacteri 86.8 3.9 8.4E-05 39.1 8.6 10 470-479 141-150 (319)
282 PF10205 KLRAQ: Predicted coil 86.6 6 0.00013 30.7 7.9 21 466-486 51-71 (102)
283 PF10211 Ax_dynein_light: Axon 86.5 19 0.00042 31.9 12.3 16 470-485 171-186 (189)
284 PF10226 DUF2216: Uncharacteri 86.5 15 0.00033 31.8 11.0 28 419-446 50-77 (195)
285 KOG0964 Structural maintenance 86.4 8.1 0.00018 42.1 11.3 81 411-491 412-496 (1200)
286 PF05266 DUF724: Protein of un 86.4 7.7 0.00017 34.3 9.7 58 430-487 116-177 (190)
287 COG2706 3-carboxymuconate cycl 86.3 33 0.00071 33.1 23.1 156 116-286 166-332 (346)
288 TIGR03545 conserved hypothetic 86.2 2.8 6.1E-05 43.8 8.0 19 466-484 241-259 (555)
289 PF12329 TMF_DNA_bd: TATA elem 86.1 8.7 0.00019 28.1 8.3 41 420-460 8-48 (74)
290 PF04012 PspA_IM30: PspA/IM30 86.1 13 0.00029 33.9 11.7 44 391-434 32-75 (221)
291 TIGR00606 rad50 rad50. This fa 86.1 5.9 0.00013 46.6 11.4 8 38-45 28-35 (1311)
292 PRK14474 F0F1 ATP synthase sub 86.1 19 0.0004 33.6 12.6 45 391-435 31-75 (250)
293 PF14915 CCDC144C: CCDC144C pr 86.0 19 0.0004 33.9 12.2 23 466-488 218-240 (305)
294 PF05278 PEARLI-4: Arabidopsis 86.0 13 0.00029 34.5 11.2 43 422-464 191-233 (269)
295 PRK13455 F0F1 ATP synthase sub 85.9 21 0.00046 31.4 12.5 47 393-439 55-101 (184)
296 PF02191 OLF: Olfactomedin-lik 85.8 30 0.00065 32.2 17.5 164 25-210 66-237 (250)
297 KOG0946 ER-Golgi vesicle-tethe 85.7 12 0.00026 40.0 11.9 47 408-454 669-715 (970)
298 PF05615 THOC7: Tho complex su 85.7 16 0.00034 30.5 11.0 56 410-465 60-115 (139)
299 KOG4673 Transcription factor T 85.6 14 0.0003 38.7 12.1 34 448-481 583-624 (961)
300 PF12777 MT: Microtubule-bindi 85.5 3.6 7.9E-05 40.4 8.1 55 405-459 209-263 (344)
301 PF07106 TBPIP: Tat binding pr 85.5 5.2 0.00011 34.8 8.3 19 446-464 117-135 (169)
302 PF10267 Tmemb_cc2: Predicted 85.4 18 0.0004 35.9 12.6 17 466-482 302-318 (395)
303 PF08826 DMPK_coil: DMPK coile 85.3 9.8 0.00021 26.6 7.7 13 436-448 23-35 (61)
304 PF12004 DUF3498: Domain of un 85.3 0.26 5.6E-06 49.9 0.0 24 411-434 377-400 (495)
305 KOG0310 Conserved WD40 repeat- 85.3 44 0.00095 33.6 16.8 173 36-265 121-302 (487)
306 PRK07353 F0F1 ATP synthase sub 85.3 21 0.00045 29.8 12.6 48 391-438 31-78 (140)
307 PF15290 Syntaphilin: Golgi-lo 85.2 4.7 0.0001 37.1 7.8 19 470-488 153-171 (305)
308 PRK05759 F0F1 ATP synthase sub 85.1 23 0.00049 30.2 12.6 50 391-440 30-79 (156)
309 PF10146 zf-C4H2: Zinc finger- 85.1 28 0.00061 31.9 12.9 38 418-455 33-70 (230)
310 PRK08475 F0F1 ATP synthase sub 85.1 24 0.00053 30.5 12.8 48 391-438 48-95 (167)
311 KOG0243 Kinesin-like protein [ 85.1 15 0.00033 40.7 12.9 28 407-434 445-472 (1041)
312 PLN00033 photosystem II stabil 85.0 45 0.00097 33.5 26.3 88 179-286 271-365 (398)
313 TIGR03321 alt_F1F0_F0_B altern 85.0 22 0.00047 33.1 12.6 47 391-437 31-77 (246)
314 PF15556 Zwint: ZW10 interacto 84.9 26 0.00056 30.7 11.6 12 470-481 156-167 (252)
315 KOG3859 Septins (P-loop GTPase 84.9 13 0.00029 34.6 10.5 11 391-401 321-331 (406)
316 PF06433 Me-amine-dh_H: Methyl 84.9 40 0.00086 32.8 19.2 110 1-131 15-132 (342)
317 COG1842 PspA Phage shock prote 84.8 21 0.00046 32.5 12.0 14 466-479 124-137 (225)
318 KOG2010 Double stranded RNA bi 84.7 3.8 8.2E-05 38.4 7.1 58 411-468 148-205 (405)
319 PLN00181 protein SPA1-RELATED; 84.7 71 0.0015 35.5 26.5 101 101-229 545-650 (793)
320 PF07889 DUF1664: Protein of u 84.7 5.7 0.00012 32.4 7.4 15 415-429 66-80 (126)
321 COG1382 GimC Prefoldin, chaper 84.6 19 0.00042 28.9 10.7 21 466-486 88-108 (119)
322 TIGR02977 phageshock_pspA phag 84.5 19 0.00042 32.7 11.9 29 404-432 46-74 (219)
323 PF07106 TBPIP: Tat binding pr 84.5 6.8 0.00015 34.0 8.5 13 411-423 94-106 (169)
324 PRK11519 tyrosine kinase; Prov 84.4 8.3 0.00018 42.2 11.0 30 450-479 351-380 (719)
325 PF05266 DUF724: Protein of un 84.4 8.6 0.00019 34.0 9.1 69 419-487 112-184 (190)
326 PF10211 Ax_dynein_light: Axon 84.3 17 0.00037 32.2 11.0 8 449-456 138-145 (189)
327 PF15066 CAGE1: Cancer-associa 84.3 17 0.00038 36.1 11.7 13 404-416 405-417 (527)
328 KOG0972 Huntingtin interacting 84.2 17 0.00037 33.8 10.9 44 386-429 224-267 (384)
329 KOG4661 Hsp27-ERE-TATA-binding 84.2 9.8 0.00021 38.7 10.1 23 437-459 645-667 (940)
330 KOG1962 B-cell receptor-associ 84.1 5.6 0.00012 35.6 7.7 23 437-459 164-186 (216)
331 PF10146 zf-C4H2: Zinc finger- 84.0 34 0.00073 31.3 12.9 41 410-450 32-72 (230)
332 KOG3647 Predicted coiled-coil 83.9 20 0.00044 32.9 11.1 9 413-421 136-144 (338)
333 PF12217 End_beta_propel: Cata 83.9 36 0.00077 31.4 22.5 273 33-318 21-334 (367)
334 COG1730 GIM5 Predicted prefold 83.8 18 0.00038 30.4 10.1 24 466-489 112-135 (145)
335 PF07851 TMPIT: TMPIT-like pro 83.7 7.6 0.00016 37.4 9.0 17 439-455 40-56 (330)
336 PF15070 GOLGA2L5: Putative go 83.6 10 0.00022 40.2 10.7 50 388-437 86-135 (617)
337 PRK10698 phage shock protein P 83.6 23 0.0005 32.3 11.9 42 391-432 33-74 (222)
338 KOG4360 Uncharacterized coiled 83.5 19 0.00041 36.3 11.7 28 432-459 220-247 (596)
339 PRK13428 F0F1 ATP synthase sub 83.4 20 0.00044 36.6 12.6 45 392-436 28-72 (445)
340 KOG0288 WD40 repeat protein Ti 83.4 12 0.00025 36.7 10.0 56 393-448 17-72 (459)
341 PF09789 DUF2353: Uncharacteri 83.4 24 0.00053 33.8 12.2 9 466-474 144-152 (319)
342 KOG2048 WD40 repeat protein [G 83.4 63 0.0014 33.9 22.1 125 137-284 423-558 (691)
343 PF06818 Fez1: Fez1; InterPro 83.1 21 0.00046 31.6 10.8 72 391-465 12-83 (202)
344 KOG3647 Predicted coiled-coil 83.1 30 0.00064 31.8 11.8 40 412-451 121-160 (338)
345 PF02388 FemAB: FemAB family; 83.1 2.8 6.1E-05 42.3 6.3 55 444-498 248-302 (406)
346 PF03938 OmpH: Outer membrane 83.1 9.1 0.0002 32.7 8.7 15 426-440 52-66 (158)
347 PF03938 OmpH: Outer membrane 83.0 19 0.00041 30.7 10.7 20 415-434 48-67 (158)
348 KOG4643 Uncharacterized coiled 83.0 18 0.0004 39.6 12.1 16 470-485 586-601 (1195)
349 PF06156 DUF972: Protein of un 82.9 3.9 8.4E-05 32.4 5.6 10 438-447 43-52 (107)
350 PF05622 HOOK: HOOK protein; 82.9 0.38 8.3E-06 52.3 0.0 59 411-469 268-332 (713)
351 KOG4460 Nuclear pore complex, 82.8 60 0.0013 33.3 17.0 74 411-484 589-677 (741)
352 TIGR00634 recN DNA repair prot 82.8 5.4 0.00012 42.2 8.6 8 455-462 332-339 (563)
353 PF15290 Syntaphilin: Golgi-lo 82.6 26 0.00056 32.5 11.4 30 396-425 75-104 (305)
354 KOG2391 Vacuolar sorting prote 82.5 7.9 0.00017 36.8 8.3 45 412-456 234-278 (365)
355 PF08581 Tup_N: Tup N-terminal 82.5 18 0.00038 26.9 9.7 66 418-486 5-74 (79)
356 COG3206 GumC Uncharacterized p 82.5 13 0.00029 38.2 11.1 36 444-479 348-383 (458)
357 PF13870 DUF4201: Domain of un 82.4 33 0.00072 30.0 12.8 15 413-427 52-66 (177)
358 PRK14471 F0F1 ATP synthase sub 82.4 31 0.00068 29.7 12.6 48 391-438 34-81 (164)
359 PRK09343 prefoldin subunit bet 82.4 25 0.00054 28.6 10.8 85 401-488 5-111 (121)
360 KOG0982 Centrosomal protein Nu 82.4 16 0.00034 36.0 10.4 14 416-429 303-316 (502)
361 KOG3838 Mannose lectin ERGIC-5 82.3 4.6 0.0001 39.1 6.8 17 472-488 329-345 (497)
362 PF14817 HAUS5: HAUS augmin-li 82.3 18 0.0004 38.3 11.9 54 397-450 80-133 (632)
363 PF10498 IFT57: Intra-flagella 82.2 13 0.00029 36.5 10.3 6 192-197 27-32 (359)
364 KOG3990 Uncharacterized conser 82.1 6.3 0.00014 35.6 7.2 16 391-406 227-242 (305)
365 KOG1144 Translation initiation 82.0 5.8 0.00013 42.0 7.9 21 479-499 287-307 (1064)
366 PLN00181 protein SPA1-RELATED; 82.0 90 0.002 34.7 23.3 61 100-178 587-650 (793)
367 PRK10115 protease 2; Provision 81.9 83 0.0018 34.3 23.6 251 37-336 137-399 (686)
368 KOG0979 Structural maintenance 81.8 15 0.00032 40.3 11.0 52 411-462 644-695 (1072)
369 TIGR01000 bacteriocin_acc bact 81.7 18 0.00038 37.2 11.7 17 470-486 292-308 (457)
370 KOG0306 WD40-repeat-containing 81.7 79 0.0017 33.8 20.6 118 11-162 344-476 (888)
371 KOG0649 WD40 repeat protein [G 81.4 43 0.00094 30.6 16.7 135 64-233 100-241 (325)
372 KOG0977 Nuclear envelope prote 81.4 14 0.0003 38.1 10.3 31 411-441 114-144 (546)
373 PF15397 DUF4618: Domain of un 81.4 40 0.00087 31.3 12.3 24 411-434 82-105 (258)
374 PF15254 CCDC14: Coiled-coil d 81.1 26 0.00057 37.4 12.2 21 386-406 391-411 (861)
375 KOG1899 LAR transmembrane tyro 81.0 13 0.00029 38.3 9.8 11 391-401 113-123 (861)
376 PRK14475 F0F1 ATP synthase sub 81.0 36 0.00078 29.5 12.6 47 392-438 37-83 (167)
377 PF04012 PspA_IM30: PspA/IM30 80.9 20 0.00044 32.6 10.7 44 394-437 28-71 (221)
378 PF05064 Nsp1_C: Nsp1-like C-t 80.9 1.6 3.4E-05 35.3 2.9 60 420-479 39-98 (116)
379 PRK10803 tol-pal system protei 80.9 7.5 0.00016 36.6 7.8 29 440-468 63-91 (263)
380 PRK13461 F0F1 ATP synthase sub 80.9 35 0.00075 29.2 12.6 48 391-438 31-78 (159)
381 KOG4807 F-actin binding protei 80.8 33 0.00071 33.3 11.8 14 480-493 478-491 (593)
382 PRK02119 hypothetical protein; 80.8 11 0.00024 27.5 7.0 52 438-489 2-57 (73)
383 TIGR01005 eps_transp_fam exopo 80.8 11 0.00025 41.4 10.5 7 478-484 378-384 (754)
384 PRK13169 DNA replication intia 80.7 5 0.00011 31.8 5.5 30 419-448 24-53 (110)
385 TIGR03495 phage_LysB phage lys 80.7 18 0.00039 29.9 8.9 29 415-443 24-52 (135)
386 COG3206 GumC Uncharacterized p 80.6 13 0.00029 38.1 10.3 46 441-486 352-397 (458)
387 PF05911 DUF869: Plant protein 80.6 17 0.00037 39.5 11.2 74 416-489 616-693 (769)
388 PRK11519 tyrosine kinase; Prov 80.6 17 0.00038 39.7 11.7 64 439-503 347-410 (719)
389 TIGR03074 PQQ_membr_DH membran 80.5 97 0.0021 34.1 26.3 34 30-69 187-222 (764)
390 PF03178 CPSF_A: CPSF A subuni 80.4 58 0.0013 31.5 15.0 136 38-209 42-189 (321)
391 PF05700 BCAS2: Breast carcino 80.2 24 0.00051 32.2 10.7 21 466-486 193-213 (221)
392 PF02646 RmuC: RmuC family; I 80.2 6.6 0.00014 37.8 7.4 39 457-501 36-74 (304)
393 PF15525 DUF4652: Domain of un 80.2 40 0.00087 29.5 12.1 69 164-235 84-156 (200)
394 PF04880 NUDE_C: NUDE protein, 80.1 2.4 5.3E-05 36.3 3.9 18 437-454 30-47 (166)
395 PF10174 Cast: RIM-binding pro 80.1 25 0.00055 38.3 12.3 6 391-396 324-329 (775)
396 KOG0999 Microtubule-associated 79.9 29 0.00063 35.4 11.6 29 410-438 43-71 (772)
397 PRK10780 periplasmic chaperone 79.9 7.7 0.00017 33.6 7.1 16 414-429 54-69 (165)
398 PF12004 DUF3498: Domain of un 79.6 0.58 1.3E-05 47.5 0.0 56 387-442 374-433 (495)
399 PF04799 Fzo_mitofusin: fzo-li 79.6 13 0.00027 32.0 7.9 40 448-487 123-162 (171)
400 KOG2391 Vacuolar sorting prote 79.5 12 0.00027 35.6 8.5 18 443-460 251-268 (365)
401 PF08912 Rho_Binding: Rho Bind 79.5 8.6 0.00019 27.4 5.8 21 424-444 10-30 (69)
402 PF14583 Pectate_lyase22: Olig 79.5 69 0.0015 31.8 16.0 216 37-287 46-282 (386)
403 KOG0612 Rho-associated, coiled 79.3 22 0.00047 40.0 11.4 24 100-123 147-170 (1317)
404 PRK14473 F0F1 ATP synthase sub 79.1 41 0.00088 29.0 12.6 95 391-485 34-131 (164)
405 PF04949 Transcrip_act: Transc 79.1 36 0.00078 28.3 12.1 105 385-489 34-146 (159)
406 TIGR02231 conserved hypothetic 79.0 16 0.00034 38.4 10.4 85 410-494 71-177 (525)
407 PRK08476 F0F1 ATP synthase sub 79.0 37 0.0008 28.4 12.9 98 391-488 33-133 (141)
408 PF03148 Tektin: Tektin family 79.0 33 0.00072 34.3 12.2 99 387-485 249-368 (384)
409 PRK05689 fliJ flagellar biosyn 78.8 24 0.00052 29.7 9.7 80 412-491 4-100 (147)
410 PRK11281 hypothetical protein; 78.8 17 0.00036 41.5 10.9 111 388-498 58-185 (1113)
411 PF14197 Cep57_CLD_2: Centroso 78.7 16 0.00035 26.3 7.1 69 392-460 1-69 (69)
412 PRK14011 prefoldin subunit alp 78.7 39 0.00083 28.4 11.2 97 401-498 1-144 (144)
413 KOG0979 Structural maintenance 78.7 26 0.00057 38.5 11.7 102 387-488 253-358 (1072)
414 PF10174 Cast: RIM-binding pro 78.6 33 0.00071 37.5 12.6 99 389-487 301-410 (775)
415 TIGR02658 TTQ_MADH_Hv methylam 78.6 71 0.0015 31.5 26.1 244 1-280 25-333 (352)
416 PF06810 Phage_GP20: Phage min 78.5 19 0.0004 30.8 8.8 76 413-488 2-77 (155)
417 PF03528 Rabaptin: Rabaptin; 78.5 7 0.00015 30.7 5.6 71 383-454 36-106 (106)
418 KOG4657 Uncharacterized conser 78.4 50 0.0011 29.6 11.6 100 394-493 35-135 (246)
419 PRK01156 chromosome segregatio 78.4 25 0.00055 39.7 12.5 105 389-493 176-280 (895)
420 TIGR02894 DNA_bind_RsfA transc 78.4 25 0.00054 29.8 9.2 90 385-474 57-154 (161)
421 KOG4552 Vitamin-D-receptor int 78.4 32 0.0007 30.2 10.0 95 398-492 10-104 (272)
422 PF14362 DUF4407: Domain of un 78.3 45 0.00097 32.1 12.6 112 388-499 113-244 (301)
423 KOG2412 Nuclear-export-signal 78.2 36 0.00079 34.8 11.7 100 391-492 177-276 (591)
424 smart00502 BBC B-Box C-termina 78.2 34 0.00074 27.5 11.8 100 398-497 2-107 (127)
425 TIGR03007 pepcterm_ChnLen poly 78.1 24 0.00053 36.7 11.5 101 404-504 276-400 (498)
426 PF09849 DUF2076: Uncharacteri 78.0 14 0.0003 34.2 8.3 72 428-499 4-85 (247)
427 PRK01156 chromosome segregatio 78.0 26 0.00056 39.6 12.4 107 384-490 161-270 (895)
428 PRK02119 hypothetical protein; 77.8 10 0.00022 27.7 6.0 55 411-465 3-57 (73)
429 KOG0249 LAR-interacting protei 77.7 34 0.00073 36.2 11.6 103 391-493 162-268 (916)
430 KOG0240 Kinesin (SMY1 subfamil 77.7 33 0.00072 35.3 11.4 107 387-493 419-530 (607)
431 PRK09343 prefoldin subunit bet 77.6 37 0.00079 27.6 10.5 92 387-478 5-111 (121)
432 PF04849 HAP1_N: HAP1 N-termin 77.5 41 0.0009 32.0 11.4 97 389-485 206-302 (306)
433 PF05529 Bap31: B-cell recepto 77.5 13 0.00027 33.1 8.0 68 414-484 122-190 (192)
434 PRK07720 fliJ flagellar biosyn 77.5 30 0.00065 29.1 9.9 77 414-490 6-99 (146)
435 PTZ00420 coronin; Provisional 77.5 1E+02 0.0022 32.6 23.0 343 84-465 70-447 (568)
436 KOG4403 Cell surface glycoprot 77.4 28 0.00061 34.3 10.4 100 389-490 252-368 (575)
437 TIGR01010 BexC_CtrB_KpsE polys 77.4 15 0.00033 36.4 9.3 80 406-485 166-265 (362)
438 KOG4360 Uncharacterized coiled 77.4 28 0.0006 35.2 10.6 94 385-478 208-301 (596)
439 PF04102 SlyX: SlyX; InterPro 77.4 11 0.00024 27.1 6.1 48 442-489 1-52 (69)
440 PF02403 Seryl_tRNA_N: Seryl-t 77.1 22 0.00048 28.1 8.5 68 390-457 30-100 (108)
441 PF06476 DUF1090: Protein of u 77.1 14 0.00031 29.6 7.2 67 395-463 42-114 (115)
442 PF15188 CCDC-167: Coiled-coil 77.0 9.6 0.00021 28.6 5.7 54 436-489 3-63 (85)
443 TIGR02338 gimC_beta prefoldin, 76.8 36 0.00078 27.1 10.2 92 387-478 1-107 (110)
444 KOG0978 E3 ubiquitin ligase in 76.8 24 0.00053 37.6 10.6 99 383-481 518-620 (698)
445 PF05701 WEMBL: Weak chloropla 76.8 27 0.00059 36.5 11.2 108 383-490 296-407 (522)
446 TIGR01541 tape_meas_lam_C phag 76.7 42 0.0009 32.7 11.7 106 389-494 21-137 (332)
447 PF03961 DUF342: Protein of un 76.6 11 0.00024 38.7 8.2 70 426-495 329-408 (451)
448 TIGR03074 PQQ_membr_DH membran 76.6 1.1E+02 0.0023 33.8 15.9 157 97-279 191-387 (764)
449 COG3937 Uncharacterized conser 76.6 21 0.00046 27.8 7.6 72 392-463 24-108 (108)
450 KOG4807 F-actin binding protei 76.4 54 0.0012 31.9 11.8 110 387-496 419-585 (593)
451 PF03961 DUF342: Protein of un 76.3 13 0.00029 38.1 8.7 69 419-487 329-407 (451)
452 KOG0240 Kinesin (SMY1 subfamil 76.1 40 0.00086 34.8 11.5 102 394-495 412-514 (607)
453 TIGR02894 DNA_bind_RsfA transc 76.0 48 0.001 28.2 10.2 89 398-489 56-152 (161)
454 TIGR00634 recN DNA repair prot 76.0 15 0.00033 38.9 9.3 111 381-491 265-375 (563)
455 PF14723 SSFA2_C: Sperm-specif 76.0 22 0.00047 30.4 8.2 65 431-495 105-178 (179)
456 COG0711 AtpF F0F1-type ATP syn 76.0 50 0.0011 28.4 12.6 95 391-485 32-129 (161)
457 KOG4848 Extracellular matrix-a 75.9 53 0.0011 28.6 11.7 93 391-483 112-217 (225)
458 PF06810 Phage_GP20: Phage min 75.9 22 0.00048 30.3 8.6 77 399-475 2-82 (155)
459 PF02601 Exonuc_VII_L: Exonucl 75.7 9.9 0.00021 36.9 7.3 178 309-493 77-264 (319)
460 KOG3433 Protein involved in me 75.7 36 0.00078 29.4 9.4 83 391-473 76-158 (203)
461 KOG3598 Thyroid hormone recept 75.7 3.6 7.8E-05 46.4 4.4 93 402-494 2090-2190(2220)
462 PRK15422 septal ring assembly 75.5 29 0.00063 25.4 8.6 71 417-487 4-78 (79)
463 TIGR02977 phageshock_pspA phag 75.3 65 0.0014 29.3 12.4 101 391-491 26-128 (219)
464 PF02994 Transposase_22: L1 tr 75.3 8.7 0.00019 38.1 6.8 103 385-487 80-186 (370)
465 PF09744 Jnk-SapK_ap_N: JNK_SA 75.1 34 0.00074 29.2 9.4 104 391-494 38-142 (158)
466 PF06156 DUF972: Protein of un 75.1 11 0.00024 29.8 6.0 54 406-459 4-57 (107)
467 PRK04325 hypothetical protein; 75.1 13 0.00028 27.2 6.0 53 413-465 5-57 (74)
468 PF06160 EzrA: Septation ring 75.0 30 0.00065 36.6 11.1 101 387-487 349-462 (560)
469 PRK11281 hypothetical protein; 75.0 30 0.00065 39.6 11.5 98 389-486 73-180 (1113)
470 PF05335 DUF745: Protein of un 74.9 60 0.0013 28.7 11.2 89 402-490 59-165 (188)
471 PF09744 Jnk-SapK_ap_N: JNK_SA 74.8 52 0.0011 28.1 10.4 104 390-493 51-155 (158)
472 KOG0579 Ste20-like serine/thre 74.8 49 0.0011 35.0 11.8 109 385-493 908-1033(1187)
473 KOG2891 Surface glycoprotein [ 74.8 41 0.00089 31.0 10.2 100 398-497 329-432 (445)
474 PRK00295 hypothetical protein; 74.7 15 0.00033 26.3 6.1 51 415-465 3-53 (68)
475 PRK06800 fliH flagellar assemb 74.7 33 0.00072 29.6 9.0 72 420-491 30-102 (228)
476 PF05701 WEMBL: Weak chloropla 74.6 52 0.0011 34.5 12.6 100 391-490 283-393 (522)
477 COG1570 XseA Exonuclease VII, 74.6 22 0.00049 35.6 9.3 164 309-488 195-365 (440)
478 PRK13182 racA polar chromosome 74.5 17 0.00038 31.6 7.7 67 393-461 82-148 (175)
479 KOG4674 Uncharacterized conser 74.5 34 0.00074 40.6 11.9 108 382-489 1229-1341(1822)
480 PF06476 DUF1090: Protein of u 74.5 43 0.00094 26.9 9.9 85 395-488 23-115 (115)
481 KOG4552 Vitamin-D-receptor int 74.3 42 0.00092 29.5 9.7 101 383-483 19-120 (272)
482 KOG2321 WD40 repeat protein [G 74.3 38 0.00082 34.9 10.7 121 90-230 133-261 (703)
483 PF02239 Cytochrom_D1: Cytochr 74.2 97 0.0021 30.8 21.0 278 2-333 15-304 (369)
484 KOG4809 Rab6 GTPase-interactin 74.2 34 0.00074 34.9 10.3 113 382-494 331-453 (654)
485 PF07111 HCR: Alpha helical co 74.2 71 0.0015 33.9 12.9 106 389-494 514-624 (739)
486 PRK04325 hypothetical protein; 74.2 22 0.00048 26.0 7.0 49 441-489 5-57 (74)
487 KOG4603 TBP-1 interacting prot 74.1 28 0.00061 29.6 8.3 60 431-490 79-144 (201)
488 PF10828 DUF2570: Protein of u 74.0 19 0.00041 28.7 7.3 60 405-464 27-86 (110)
489 PF14073 Cep57_CLD: Centrosome 74.0 59 0.0013 28.2 11.1 108 385-492 7-136 (178)
490 PF10805 DUF2730: Protein of u 74.0 18 0.00039 28.6 7.0 63 409-471 34-103 (106)
491 PF10267 Tmemb_cc2: Predicted 73.9 34 0.00074 34.0 10.4 89 405-493 214-308 (395)
492 PRK00736 hypothetical protein; 73.9 14 0.00031 26.5 5.9 51 415-465 3-53 (68)
493 PF15397 DUF4618: Domain of un 73.9 51 0.0011 30.6 10.8 97 398-494 62-163 (258)
494 PRK13182 racA polar chromosome 73.9 25 0.00054 30.7 8.5 67 429-495 83-151 (175)
495 KOG0266 WD40 repeat-containing 73.8 1.1E+02 0.0024 31.4 17.0 187 1-230 223-412 (456)
496 PRK04406 hypothetical protein; 73.8 15 0.00033 26.9 6.0 54 412-465 6-59 (75)
497 PRK00846 hypothetical protein; 73.6 16 0.00035 26.8 6.1 53 413-465 9-61 (77)
498 PF14257 DUF4349: Domain of un 73.6 10 0.00022 35.7 6.5 87 403-491 105-191 (262)
499 PRK10115 protease 2; Provision 73.5 1.4E+02 0.0031 32.5 21.3 246 4-288 154-405 (686)
500 PF15254 CCDC14: Coiled-coil d 73.5 35 0.00077 36.5 10.7 104 389-495 448-551 (861)
No 1
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=8.6e-46 Score=376.72 Aligned_cols=313 Identities=20% Similarity=0.281 Sum_probs=259.1
Q ss_pred CCCeEeeCCC----CceEEeecCCCCCCccccceEEEECCEEEEEcCCCC--CccCCceEEEEccCCceeeeccccccCC
Q 010551 3 SGSWHLELPY----DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRN--GRFLSDVQVFDLRSLAWSNLRLETELDA 76 (507)
Q Consensus 3 ~~~~~~d~~~----~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~--~~~~~~~~~~d~~~~~W~~~~~~~~~~~ 76 (507)
.++|++++.+ ++|..++..+.+|.||.+|+++++++.||++||... ....+++++||+.+++|..++.+..
T Consensus 137 ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~--- 213 (470)
T PLN02193 137 LGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGD--- 213 (470)
T ss_pred eEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCC---
Confidence 3677778755 899999977778999999999999999999999653 2345789999999999998766532
Q ss_pred CccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEE
Q 010551 77 DKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLII 156 (507)
Q Consensus 77 ~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~ 156 (507)
.|+.+|.+|++++++++||++||..... .++++++||+.+++|+.+.+.+..|.+|.+|++++++++||+
T Consensus 214 ---------~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv 283 (470)
T PLN02193 214 ---------VPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYV 283 (470)
T ss_pred ---------CCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEE
Confidence 1222467999999999999999987544 478999999999999999865556899999999999999999
Q ss_pred EcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEeccc
Q 010551 157 FGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 236 (507)
Q Consensus 157 ~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~ 236 (507)
|||.+... ..+++++||+.+++|+.+++.+.+|.+|.+|+++++++ ++||+||.++. ..+++++||+.+++|+.+..
T Consensus 284 ~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~g-kiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~ 360 (470)
T PLN02193 284 FGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQG-KVWVVYGFNGC-EVDDVHYYDPVQDKWTQVET 360 (470)
T ss_pred ECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECC-cEEEEECCCCC-ccCceEEEECCCCEEEEecc
Confidence 99987543 47899999999999999987777888999999998855 59999997643 46899999999999999877
Q ss_pred CCCCCCCCCccEEEEECCeEEEEeccCCC---------CCcceEEEEECCCCcEEEeccCCC--CCCCCCCCCceEEEEE
Q 010551 237 KGDLVTGRAGHAGITIDENWYIVGGGDNN---------NGCQETIVLNMTKLAWSILTSVKG--RNPLASEGLSVCSAII 305 (507)
Q Consensus 237 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~---------~~~~~~~~~d~~~~~W~~v~~~~~--~~~~~~~~~~~~~~~~ 305 (507)
.+..|.+|..|++++++++||||||.... ...+++|+||+.+++|+.+..++. ..|.+|..+.++...+
T Consensus 361 ~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~ 440 (470)
T PLN02193 361 FGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTI 440 (470)
T ss_pred CCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEE
Confidence 67789999999999999999999997531 235789999999999999987653 3455665555555556
Q ss_pred cCceEEEEEccCC--CCcCceEEEEECC
Q 010551 306 EGEHHLVAFGGYN--GKYNNEVFVMRLK 331 (507)
Q Consensus 306 ~~~~~l~v~GG~~--~~~~~~~~~~~~~ 331 (507)
.+++.||+|||++ +...+|+|+|++.
T Consensus 441 ~~~~~~~~fGG~~~~~~~~~D~~~~~~~ 468 (470)
T PLN02193 441 DGKKGLVMHGGKAPTNDRFDDLFFYGID 468 (470)
T ss_pred cCCceEEEEcCCCCccccccceEEEecC
Confidence 6666799999996 4578999999874
No 2
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=4e-44 Score=352.13 Aligned_cols=307 Identities=21% Similarity=0.290 Sum_probs=246.1
Q ss_pred CCCCceEEeecC-CCCCCccccceEEEECCEEEEEcCCCC--CccCCceEEEEccCCceeeeccccccCCCccccCCCcC
Q 010551 10 LPYDLWVTLPVS-GARPSPRYKHAAAVFDQKLYIVGGSRN--GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLE 86 (507)
Q Consensus 10 ~~~~~W~~~~~~-~~~p~~r~~~~~~~~~~~iyi~GG~~~--~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~ 86 (507)
+....|..+... +.+|.||.+|++++++++|||+||... ....+++++||+.+++|..++++...
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~------------ 71 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDV------------ 71 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCC------------
Confidence 367789999763 457999999999999999999999743 33467999999999999988765421
Q ss_pred CCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecC--CCCCCCCcCcEEEEECCEEEEEcCCCCCC
Q 010551 87 VLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS--GKVPVTRGGHSVTLVGSRLIIFGGEDRSR 164 (507)
Q Consensus 87 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~--g~~p~~r~~~~~~~~~~~iy~~GG~~~~~ 164 (507)
+...+.+|++++++++||+|||...... .+++++||+.+++|+.+... ...|.+|..|++++++++||+|||.+...
T Consensus 72 p~~~~~~~~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~ 150 (341)
T PLN02153 72 PRISCLGVRMVAVGTKLYIFGGRDEKRE-FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGG 150 (341)
T ss_pred CCCccCceEEEEECCEEEEECCCCCCCc-cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCC
Confidence 1223558999999999999999875543 67899999999999988631 12388999999999999999999986431
Q ss_pred -----CccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCC--------CCCCcEEEEECCCCcE
Q 010551 165 -----KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS--------IFFNDLHVLDLQTNEW 231 (507)
Q Consensus 165 -----~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~--------~~~~~i~~~d~~~~~W 231 (507)
..++++++||+.+++|..++..+..|.+|.+|+++++++ +|||+||.+.. ...+++++||+.+++|
T Consensus 151 ~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 151 LMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQG-KIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW 229 (341)
T ss_pred ccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECC-eEEEEeccccccccCCccceecCceEEEEcCCCcE
Confidence 246789999999999999988766678999999888855 59999986421 2357899999999999
Q ss_pred EecccCCCCCCCCCccEEEEECCeEEEEeccCC---------CCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEE
Q 010551 232 SQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN---------NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCS 302 (507)
Q Consensus 232 ~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~---------~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~ 302 (507)
+.+...+..|.+|..|++++++++||||||... ....+++|.||+.+++|+.+.... ..|.|+.++.++.
T Consensus 230 ~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~-~~~~pr~~~~~~~ 308 (341)
T PLN02153 230 TEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECG-EPAMPRGWTAYTT 308 (341)
T ss_pred EeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCC-CCCCCCccccccc
Confidence 998777778999999999999999999999632 122578999999999999986432 2344555555566
Q ss_pred EEEcCceEEEEEccCCC--CcCceEEEEECC
Q 010551 303 AIIEGEHHLVAFGGYNG--KYNNEVFVMRLK 331 (507)
Q Consensus 303 ~~~~~~~~l~v~GG~~~--~~~~~~~~~~~~ 331 (507)
+.+.+++.|||+||+++ ...+|+|.|+..
T Consensus 309 ~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 309 ATVYGKNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred cccCCcceEEEEcCcCCCCccccceEEEecc
Confidence 66677778999999965 367999999764
No 3
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.6e-44 Score=314.81 Aligned_cols=293 Identities=26% Similarity=0.480 Sum_probs=246.2
Q ss_pred ceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccC-----CceEEEEccCCceeeeccccccCCCccccCCCcCCC
Q 010551 14 LWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFL-----SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVL 88 (507)
Q Consensus 14 ~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~-----~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p 88 (507)
.|+.--..| +.|.+|+++.+|+.||-|||+..+... -+|.++|..+.+|.++++.....+.+.. -+..|
T Consensus 3 ~WTVHLeGG---PrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~---yp~VP 76 (392)
T KOG4693|consen 3 TWTVHLEGG---PRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESP---YPAVP 76 (392)
T ss_pred eEEEEecCC---cccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCC---CCccc
Confidence 577776545 459999999999999999997765332 3799999999999999874322111111 13456
Q ss_pred CCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCC-CCCcc
Q 010551 89 PPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDR-SRKLL 167 (507)
Q Consensus 89 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~-~~~~~ 167 (507)
-.|++|++|.+.+++|+|||.+......|.++.||+.++.|.+...+|..|.+|.+|+++++++.+|+|||+.. ..++.
T Consensus 77 yqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS 156 (392)
T KOG4693|consen 77 YQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFS 156 (392)
T ss_pred hhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhh
Confidence 67999999999999999999999888899999999999999999999999999999999999999999999954 35678
Q ss_pred CcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCC---------CCCCcEEEEECCCCcEEecccCC
Q 010551 168 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS---------IFFNDLHVLDLQTNEWSQPEIKG 238 (507)
Q Consensus 168 n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~---------~~~~~i~~~d~~~~~W~~~~~~~ 238 (507)
++++.+|+.|.+|+.+.+.|.+|.-|.+|++++++ ..+|||||.++. .+++.+..+|+.|+.|......+
T Consensus 157 ~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~-~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~ 235 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMHTKGDPPRWRDFHTASVID-GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT 235 (392)
T ss_pred ccceeEeccceeeeehhccCCCchhhhhhhhhhcc-ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC
Confidence 99999999999999999999999999999999996 669999998643 46678999999999999987777
Q ss_pred CCCCCCCccEEEEECCeEEEEeccCCC--CCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcc
Q 010551 239 DLVTGRAGHAGITIDENWYIVGGGDNN--NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGG 316 (507)
Q Consensus 239 ~~p~~r~~~~~~~~~~~l~v~GG~~~~--~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG 316 (507)
-.|..|..|++.++++.+|||||+++. ..++|+|.||+.+..|+.|. ..+..|.+|.+. |+++..+ .+|+|||
T Consensus 236 ~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~-~~Gk~P~aRRRq--C~~v~g~--kv~LFGG 310 (392)
T KOG4693|consen 236 MKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVIS-VRGKYPSARRRQ--CSVVSGG--KVYLFGG 310 (392)
T ss_pred cCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeee-ccCCCCCcccce--eEEEECC--EEEEecC
Confidence 788999999999999999999998875 34899999999999999885 455555555544 4555555 7999999
Q ss_pred CC
Q 010551 317 YN 318 (507)
Q Consensus 317 ~~ 318 (507)
..
T Consensus 311 Ts 312 (392)
T KOG4693|consen 311 TS 312 (392)
T ss_pred CC
Confidence 65
No 4
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=8.2e-40 Score=331.60 Aligned_cols=298 Identities=33% Similarity=0.587 Sum_probs=261.0
Q ss_pred ecCCCCCCccccceEEEECCEEEEEcCCCCCccCCc--eEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeE
Q 010551 19 PVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSD--VQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCM 96 (507)
Q Consensus 19 ~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~--~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~ 96 (507)
..++..|.+|++|+++.+++++|||||...+....+ +|+||..+..|....+.+. .|.+|.+|++
T Consensus 52 ~~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~-------------~p~~r~g~~~ 118 (482)
T KOG0379|consen 52 DVLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGD-------------EPSPRYGHSL 118 (482)
T ss_pred ccCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCC-------------CCCcccceeE
Confidence 356788999999999999999999999776655555 9999999999999888764 4789999999
Q ss_pred EEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECC
Q 010551 97 VKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE 176 (507)
Q Consensus 97 ~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~ 176 (507)
++++++||+|||.+......++++.||+.|++|+.+.+.|.+|++|.+|+++++++++|||||.+......|++|+||+.
T Consensus 119 ~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~ 198 (482)
T KOG0379|consen 119 SAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLE 198 (482)
T ss_pred EEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccc
Confidence 99999999999999755568899999999999999999999999999999999999999999998877689999999999
Q ss_pred CCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCC-CCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCe
Q 010551 177 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN 255 (507)
Q Consensus 177 t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 255 (507)
+.+|.++.+.|..|.||.+|+++++++. ++||||.+ +..+++|+|.||+.+..|..+...+..|.+|++|+++..+++
T Consensus 199 ~~~W~~~~~~g~~P~pR~gH~~~~~~~~-~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~ 277 (482)
T KOG0379|consen 199 TSTWSELDTQGEAPSPRYGHAMVVVGNK-LLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDH 277 (482)
T ss_pred cccceecccCCCCCCCCCCceEEEECCe-EEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCE
Confidence 9999999999999999999999999777 66666655 778999999999999999988888999999999999999999
Q ss_pred EEEEeccCCC--CCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCC--CCcCceEEEEEC
Q 010551 256 WYIVGGGDNN--NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN--GKYNNEVFVMRL 330 (507)
Q Consensus 256 l~v~GG~~~~--~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~--~~~~~~~~~~~~ 330 (507)
++++||.... ..+.++|.||+.+..|..+.......|.++..+..+.+...+...+.++||.. +....+++.+..
T Consensus 278 ~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (482)
T KOG0379|consen 278 LLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQI 356 (482)
T ss_pred EEEEcCCcccccccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcccccc
Confidence 9999998775 25889999999999999998777566778888888877777777777778733 345556655544
No 5
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.2e-38 Score=324.34 Aligned_cols=291 Identities=21% Similarity=0.315 Sum_probs=234.0
Q ss_pred cccceEEEECCEEEEEcCCCCCccCCc--eEEEEccC----CceeeeccccccCCCccccCCCcCCCCCccceeEEEECC
Q 010551 28 RYKHAAAVFDQKLYIVGGSRNGRFLSD--VQVFDLRS----LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT 101 (507)
Q Consensus 28 r~~~~~~~~~~~iyi~GG~~~~~~~~~--~~~~d~~~----~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~ 101 (507)
..+...++.+++|+.|+|..... ++. ++.+++.+ ++|.++.+.. ..|.+|.+|+++++++
T Consensus 111 ~~g~~f~~~~~~ivgf~G~~~~~-~~~ig~y~~~~~~~~~~~~W~~~~~~~-------------~~P~pR~~h~~~~~~~ 176 (470)
T PLN02193 111 RPGVKFVLQGGKIVGFHGRSTDV-LHSLGAYISLPSTPKLLGKWIKVEQKG-------------EGPGLRCSHGIAQVGN 176 (470)
T ss_pred CCCCEEEEcCCeEEEEeccCCCc-EEeeEEEEecCCChhhhceEEEcccCC-------------CCCCCccccEEEEECC
Confidence 34555566699999999976543 444 45557644 8999987653 3478999999999999
Q ss_pred EEEEEeccCCCC-CCcceEEEEECCCCcEEEeecCCCCCC-CCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc
Q 010551 102 KLLILGGHYKKS-SDSMIVRFIDLETNLCGVMETSGKVPV-TRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT 179 (507)
Q Consensus 102 ~lyv~GG~~~~~-~~~~~~~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~ 179 (507)
+||++||..... ...+++|+||+.+++|+.+++.+++|. +|.+|++++++++||+|||.+... .+|++++||+.+++
T Consensus 177 ~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~ 255 (470)
T PLN02193 177 KIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNE 255 (470)
T ss_pred EEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCE
Confidence 999999985432 234689999999999999877666665 467899999999999999987543 58999999999999
Q ss_pred EEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEE
Q 010551 180 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIV 259 (507)
Q Consensus 180 W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~ 259 (507)
|+.+.+.+..|.+|+.|+++++ +++||||||.+.....++++.||+.+++|+.+...+.+|.+|..|+++++++++||+
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyvi 334 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVV 334 (470)
T ss_pred EEEcCcCCCCCCCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEE
Confidence 9999876666889999999887 456999999987778899999999999999987666678899999999999999999
Q ss_pred eccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCC----------CcCceEEEEE
Q 010551 260 GGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFVMR 329 (507)
Q Consensus 260 GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~----------~~~~~~~~~~ 329 (507)
||.++. .++++++||+.+++|+.++.+.. .|.+|..+. ++++. +.||||||... ...+++|+||
T Consensus 335 GG~~g~-~~~dv~~yD~~t~~W~~~~~~g~-~P~~R~~~~--~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D 408 (470)
T PLN02193 335 YGFNGC-EVDDVHYYDPVQDKWTQVETFGV-RPSERSVFA--SAAVG--KHIVIFGGEIAMDPLAHVGPGQLTDGTFALD 408 (470)
T ss_pred ECCCCC-ccCceEEEECCCCEEEEeccCCC-CCCCcceeE--EEEEC--CEEEEECCccCCccccccCccceeccEEEEE
Confidence 997653 46899999999999999876532 344554444 34444 37999999752 2457999999
Q ss_pred CCCCCCCCCcc
Q 010551 330 LKPRDIPRPKI 340 (507)
Q Consensus 330 ~~~~~w~~~~~ 340 (507)
+.++.|.....
T Consensus 409 ~~t~~W~~~~~ 419 (470)
T PLN02193 409 TETLQWERLDK 419 (470)
T ss_pred cCcCEEEEccc
Confidence 99999997664
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.1e-39 Score=333.41 Aligned_cols=252 Identities=28% Similarity=0.416 Sum_probs=233.8
Q ss_pred CeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCC-CCccCCceEEEEccCCceeeeccccccCCCccccCC
Q 010551 5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSR-NGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG 83 (507)
Q Consensus 5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~-~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~ 83 (507)
+-+|||.++.|..++ ++|.+|..++++++++.||++||.+ +....+++++||+.+++|..++++..
T Consensus 303 ve~yd~~~~~w~~~a---~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~---------- 369 (571)
T KOG4441|consen 303 VECYDPKTNEWSSLA---PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT---------- 369 (571)
T ss_pred eEEecCCcCcEeecC---CCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccC----------
Confidence 458999999999999 7999999999999999999999998 67888999999999999999888754
Q ss_pred CcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCC
Q 010551 84 LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRS 163 (507)
Q Consensus 84 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~ 163 (507)
+|.+++++++++.||++||.++... .+++++||+.+++|+.+. +|+.+|.+|++++++++||++||.+..
T Consensus 370 ------~R~~~~v~~l~g~iYavGG~dg~~~-l~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 370 ------KRSDFGVAVLDGKLYAVGGFDGEKS-LNSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred ------ccccceeEEECCEEEEEeccccccc-cccEEEecCCCCcccccC---CCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 6999999999999999999996555 889999999999999998 899999999999999999999999988
Q ss_pred CCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCC
Q 010551 164 RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTG 243 (507)
Q Consensus 164 ~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~ 243 (507)
..+++++.+|||.+++|+.+++ ++.+|.+++++++ +++||++||.++......+.+||+.+++|+.+ .+++.+
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~---M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v---~~m~~~ 512 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAP---MNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMV---APMTSP 512 (571)
T ss_pred ccccceEEEEcCCCCceeecCC---cccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEc---ccCccc
Confidence 7689999999999999999985 7889999998888 55599999999876777899999999999997 678899
Q ss_pred CCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEecc
Q 010551 244 RAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 286 (507)
Q Consensus 244 r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~ 286 (507)
|+.+.++++++.+|++||.++...++.+..||+.+++|+.+..
T Consensus 513 rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 513 RSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred cccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 9999999999999999999999999999999999999999876
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=4.1e-39 Score=331.29 Aligned_cols=283 Identities=24% Similarity=0.348 Sum_probs=242.8
Q ss_pred CCCccccceEEEECCEEEEEcCCCC-CccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCE
Q 010551 24 RPSPRYKHAAAVFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTK 102 (507)
Q Consensus 24 ~p~~r~~~~~~~~~~~iyi~GG~~~-~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~ 102 (507)
++.+|..... ...+.||++||..+ ....+.+..||+.++.|..+..++ .+|..+++++++|.
T Consensus 272 ~~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~----------------~~r~~~~~~~~~~~ 334 (571)
T KOG4441|consen 272 MQSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP----------------SPRCRVGVAVLNGK 334 (571)
T ss_pred ccCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC----------------cccccccEEEECCE
Confidence 3444443332 45689999999886 788899999999999999998764 47999999999999
Q ss_pred EEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEE
Q 010551 103 LLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDA 182 (507)
Q Consensus 103 lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~ 182 (507)
||++||++......+++++||+.+++|+.++ +|+.+|.+++++++++.||++||.++.. +++++++||+.+++|..
T Consensus 335 lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 335 LYVVGGYDSGSDRLSSVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTP 410 (571)
T ss_pred EEEEccccCCCcccceEEEecCCCCceeccC---CccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccc
Confidence 9999999953345889999999999999988 8999999999999999999999999544 58999999999999999
Q ss_pred eccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCC-CCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEec
Q 010551 183 VEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGG 261 (507)
Q Consensus 183 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG 261 (507)
+.+ ++.+|++|+++++ +++||++||.++.. +++.+.+||+.+++|+.+ ++++.+|.+|++++++++||++||
T Consensus 411 va~---m~~~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~---~~M~~~R~~~g~a~~~~~iYvvGG 483 (571)
T KOG4441|consen 411 VAP---MLTRRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI---APMNTRRSGFGVAVLNGKIYVVGG 483 (571)
T ss_pred cCC---CCcceeeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeec---CCcccccccceEEEECCEEEEECC
Confidence 974 6779999999998 55599999998776 999999999999999996 789999999999999999999999
Q ss_pred cCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCC-cCceEEEEECCCCCCCCCcc
Q 010551 262 GDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKI 340 (507)
Q Consensus 262 ~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~w~~~~~ 340 (507)
.++......+..||+.+++|+.+.+++.. +.....+++.+ .+|++||+++. ..+.+..||+.++.|.....
T Consensus 484 ~~~~~~~~~VE~ydp~~~~W~~v~~m~~~------rs~~g~~~~~~--~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 484 FDGTSALSSVERYDPETNQWTMVAPMTSP------RSAVGVVVLGG--KLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred ccCCCccceEEEEcCCCCceeEcccCccc------cccccEEEECC--EEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 98866677899999999999999776543 33333444544 89999999875 78899999999999997666
Q ss_pred cC
Q 010551 341 FQ 342 (507)
Q Consensus 341 ~~ 342 (507)
+.
T Consensus 556 ~~ 557 (571)
T KOG4441|consen 556 PE 557 (571)
T ss_pred cc
Confidence 43
No 8
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4.3e-39 Score=332.89 Aligned_cols=251 Identities=12% Similarity=0.152 Sum_probs=218.7
Q ss_pred CCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCC-CCccCCceEEEEccCCceeeeccccccCCCccccC
Q 010551 4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSR-NGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS 82 (507)
Q Consensus 4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~-~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~ 82 (507)
.+|+||+.+++|..++ ++|.+|.+|+++++++.||++||.. +....+++++||+.++.|..++++
T Consensus 273 ~v~~yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m----------- 338 (557)
T PHA02713 273 CILVYNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM----------- 338 (557)
T ss_pred CEEEEeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC-----------
Confidence 4799999999999999 7999999999999999999999975 345678999999999999988866
Q ss_pred CCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCC
Q 010551 83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDR 162 (507)
Q Consensus 83 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~ 162 (507)
|.+|.+|++++++++||++||.+... ..+++++||+.+++|+.++ +||.+|.++++++++++||++||.+.
T Consensus 339 -----~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviGG~~~ 409 (557)
T PHA02713 339 -----IKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIGGRTE 409 (557)
T ss_pred -----cchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEeCCCc
Confidence 44799999999999999999986543 3678999999999999988 89999999999999999999999864
Q ss_pred CC-----------------CccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCC-CCcEEEE
Q 010551 163 SR-----------------KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIF-FNDLHVL 224 (507)
Q Consensus 163 ~~-----------------~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~-~~~i~~~ 224 (507)
.. ...+.+++|||.+++|+.++ +++.+|..++++++++ +|||+||.++... .+.+++|
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~-~IYv~GG~~~~~~~~~~ve~Y 485 (557)
T PHA02713 410 HIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKD-DIYVVCDIKDEKNVKTCIFRY 485 (557)
T ss_pred ccccccccccccccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECC-EEEEEeCCCCCCccceeEEEe
Confidence 21 13678999999999999887 4788999999988855 5999999865433 3468999
Q ss_pred ECCC-CcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccC
Q 010551 225 DLQT-NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV 287 (507)
Q Consensus 225 d~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~ 287 (507)
|+.+ ++|+.+ +++|.+|..+++++++++||++||.++. ..+..||+.+++|+.+.+.
T Consensus 486 dp~~~~~W~~~---~~m~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 486 NTNTYNGWELI---TTTESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred cCCCCCCeeEc---cccCcccccceeEEECCEEEEEeeecce---eehhhcCcccccccchhhh
Confidence 9999 899987 6899999999999999999999998763 3678999999999998654
No 9
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=4.2e-38 Score=309.44 Aligned_cols=263 Identities=21% Similarity=0.287 Sum_probs=211.9
Q ss_pred CCCeEeeCCCCceEEeecCCCCCCc-cccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcccc
Q 010551 3 SGSWHLELPYDLWVTLPVSGARPSP-RYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED 81 (507)
Q Consensus 3 ~~~~~~d~~~~~W~~~~~~~~~p~~-r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~ 81 (507)
+++|+||+.+++|..++..+..|.+ +.+|++++++++||+|||.......+++++||+.+++|..++.+..
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~-------- 121 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDE-------- 121 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCC--------
Confidence 5799999999999999865444443 4589999999999999998777778899999999999999876532
Q ss_pred CCCcCCCCCccceeEEEECCEEEEEeccCCCCC-----CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEE
Q 010551 82 SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS-----DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLII 156 (507)
Q Consensus 82 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~-----~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~ 156 (507)
...|.+|.+|++++++++|||+||...... ..+++++||+.+++|+.++..+.+|.+|.+|++++++++||+
T Consensus 122 ---~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv 198 (341)
T PLN02153 122 ---EGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWV 198 (341)
T ss_pred ---CCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEE
Confidence 234778999999999999999999864321 346899999999999999866666789999999999999999
Q ss_pred EcCCCCC-------CCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCC---------CCCCCCc
Q 010551 157 FGGEDRS-------RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS---------HSIFFND 220 (507)
Q Consensus 157 ~GG~~~~-------~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~---------~~~~~~~ 220 (507)
+||.+.. ....+++++||+.+++|+.+...+.+|.+|..|++++++ ++||||||.. .....|+
T Consensus 199 ~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~n~ 277 (341)
T PLN02153 199 VYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVG-KYIIIFGGEVWPDLKGHLGPGTLSNE 277 (341)
T ss_pred EeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEEC-CEEEEECcccCCcccccccccccccc
Confidence 9997421 123688999999999999999888889999999999885 5699999973 2345689
Q ss_pred EEEEECCCCcEEecccCCCCCCC--CCccEEEE-E-CCeEEEEeccCCC-CCcceEEEEECC
Q 010551 221 LHVLDLQTNEWSQPEIKGDLVTG--RAGHAGIT-I-DENWYIVGGGDNN-NGCQETIVLNMT 277 (507)
Q Consensus 221 i~~~d~~~~~W~~~~~~~~~p~~--r~~~~~~~-~-~~~l~v~GG~~~~-~~~~~~~~~d~~ 277 (507)
+|.||+.+++|+.+...+..|.| +..|+++. . ++++||+||.+.. ..+.|+|.|+..
T Consensus 278 v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 278 GYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred EEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEEecc
Confidence 99999999999987543333444 44444443 3 3589999998664 567899999754
No 10
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=3.8e-39 Score=281.16 Aligned_cols=248 Identities=25% Similarity=0.435 Sum_probs=220.4
Q ss_pred CCCeEeeCCCCceEEeecC----------CCCCCccccceEEEECCEEEEEcCCCC-CccCCceEEEEccCCceeeeccc
Q 010551 3 SGSWHLELPYDLWVTLPVS----------GARPSPRYKHAAAVFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLE 71 (507)
Q Consensus 3 ~~~~~~d~~~~~W~~~~~~----------~~~p~~r~~~~~~~~~~~iyi~GG~~~-~~~~~~~~~~d~~~~~W~~~~~~ 71 (507)
+|+=++|-.+-+|+++|.. ...|.-|++|+++.+.+++|+|||.++ ....|.++.|||.++.|++....
T Consensus 44 iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~ 123 (392)
T KOG4693|consen 44 IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVE 123 (392)
T ss_pred ceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeecccccccccccee
Confidence 4677888999999999851 124567999999999999999999776 56678999999999999987766
Q ss_pred cccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCC-CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE
Q 010551 72 TELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS-DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV 150 (507)
Q Consensus 72 ~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~-~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~ 150 (507)
+ ..|.+|-+|++|++|+.+|||||+..... ++++++++|++|.+|+.+.+.|++|.-|..|+++++
T Consensus 124 G-------------~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~ 190 (392)
T KOG4693|consen 124 G-------------FVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVI 190 (392)
T ss_pred e-------------ecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhc
Confidence 4 56889999999999999999999976654 688999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCCC--------CCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCC--CCCCc
Q 010551 151 GSRLIIFGGEDRS--------RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS--IFFND 220 (507)
Q Consensus 151 ~~~iy~~GG~~~~--------~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~--~~~~~ 220 (507)
++.+|+|||.... ..+++.+..||+.|..|......+..|..|..|++.++ ++.+|||||+.+. ..+||
T Consensus 191 ~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvY-ng~~Y~FGGYng~ln~Hfnd 269 (392)
T KOG4693|consen 191 DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVY-NGKMYMFGGYNGTLNVHFND 269 (392)
T ss_pred cceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEE-cceEEEecccchhhhhhhcc
Confidence 9999999998542 34678899999999999999888888999999999998 5559999999764 67899
Q ss_pred EEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCC
Q 010551 221 LHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN 264 (507)
Q Consensus 221 i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~ 264 (507)
+|.||+.+..|..+...|.-|.+|..+++++.++++|+|||...
T Consensus 270 Ly~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 270 LYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred eeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 99999999999999999999999999999999999999999653
No 11
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-36 Score=311.88 Aligned_cols=267 Identities=12% Similarity=0.187 Sum_probs=218.4
Q ss_pred EEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcce
Q 010551 39 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI 118 (507)
Q Consensus 39 ~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 118 (507)
.|++.||.. ......+++||+.+++|..++++ |.+|.+|++++++++||++||........++
T Consensus 259 ~l~~~~g~~-~~~~~~v~~yd~~~~~W~~l~~m----------------p~~r~~~~~a~l~~~IYviGG~~~~~~~~~~ 321 (557)
T PHA02713 259 CLVCHDTKY-NVCNPCILVYNINTMEYSVISTI----------------PNHIINYASAIVDNEIIIAGGYNFNNPSLNK 321 (557)
T ss_pred EEEEecCcc-ccCCCCEEEEeCCCCeEEECCCC----------------CccccceEEEEECCEEEEEcCCCCCCCccce
Confidence 355555521 22335789999999999998866 4468899999999999999998643334688
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceE
Q 010551 119 VRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA 198 (507)
Q Consensus 119 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~ 198 (507)
+++||+.++.|..++ +||.+|..+++++++++||++||.++.. ..+++++||+.+++|..++ ++|.+|..+++
T Consensus 322 v~~Yd~~~n~W~~~~---~m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~ 394 (557)
T PHA02713 322 VYKINIENKIHVELP---PMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLP---DMPIALSSYGM 394 (557)
T ss_pred EEEEECCCCeEeeCC---CCcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECC---CCCcccccccE
Confidence 999999999999887 8999999999999999999999987543 4788999999999999987 48889999999
Q ss_pred EEEcCCEEEEEcCCCCC------------------CCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEe
Q 010551 199 ALHANRYLIVFGGCSHS------------------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVG 260 (507)
Q Consensus 199 ~~~~~~~l~v~GG~~~~------------------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~G 260 (507)
+++ +++||++||.+.. ...+.+++||+.+++|+.+ +++|.+|..+++++++++|||+|
T Consensus 395 ~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v---~~m~~~r~~~~~~~~~~~IYv~G 470 (557)
T PHA02713 395 CVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL---PNFWTGTIRPGVVSHKDDIYVVC 470 (557)
T ss_pred EEE-CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec---CCCCcccccCcEEEECCEEEEEe
Confidence 888 5569999998642 1357899999999999986 68889999999999999999999
Q ss_pred ccCCCCCc-ceEEEEECCC-CcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCCCCCCC
Q 010551 261 GGDNNNGC-QETIVLNMTK-LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRP 338 (507)
Q Consensus 261 G~~~~~~~-~~~~~~d~~~-~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~w~~~ 338 (507)
|.++.... +.+++||+.+ ++|+.++++|.+ +..+.++++.+ .||++||+++ ...+.+||+.+++|...
T Consensus 471 G~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~------r~~~~~~~~~~--~iyv~Gg~~~--~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 471 DIKDEKNVKTCIFRYNTNTYNGWELITTTESR------LSALHTILHDN--TIMMLHCYES--YMLQDTFNVYTYEWNHI 540 (557)
T ss_pred CCCCCCccceeEEEecCCCCCCeeEccccCcc------cccceeEEECC--EEEEEeeecc--eeehhhcCcccccccch
Confidence 98654333 3578999999 899999877543 34455556655 8999999887 35789999999999976
Q ss_pred cccCC
Q 010551 339 KIFQS 343 (507)
Q Consensus 339 ~~~~~ 343 (507)
...++
T Consensus 541 ~~~~~ 545 (557)
T PHA02713 541 CHQHS 545 (557)
T ss_pred hhhcC
Confidence 65443
No 12
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=7.6e-37 Score=288.43 Aligned_cols=303 Identities=25% Similarity=0.447 Sum_probs=249.9
Q ss_pred CCceEEeec-CCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCC
Q 010551 12 YDLWVTLPV-SGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPP 90 (507)
Q Consensus 12 ~~~W~~~~~-~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (507)
--+|.++.. +|+.|.||.+|.++++..-|.||||-+.+ ..+.+.+||..++.|..-..-+ ..|++
T Consensus 16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG-iiDELHvYNTatnqWf~PavrG-------------DiPpg 81 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG-IIDELHVYNTATNQWFAPAVRG-------------DIPPG 81 (830)
T ss_pred ccceEEEecccCCCCCccccchheeeeeeEEEecCCccc-chhhhhhhccccceeecchhcC-------------CCCCc
Confidence 347988854 58999999999999999999999996544 5788999999999998776665 45999
Q ss_pred ccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeec----CCCCCCCCcCcEEEEECCEEEEEcCCCCC---
Q 010551 91 MSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET----SGKVPVTRGGHSVTLVGSRLIIFGGEDRS--- 163 (507)
Q Consensus 91 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~----~g~~p~~r~~~~~~~~~~~iy~~GG~~~~--- 163 (507)
...|+.+..|.+||+|||+...+.++|++|.+....-.|+++.+ +|.+|.+|.+|+...++++.|+|||...+
T Consensus 82 cAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseD 161 (830)
T KOG4152|consen 82 CAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSED 161 (830)
T ss_pred hhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccC
Confidence 99999999999999999999988889999888777777887654 68899999999999999999999997432
Q ss_pred -----CCccCcEEEEECCCC----cEEEeccCCCCCCCCCCceEEEEc-----CCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010551 164 -----RKLLNDVHFLDLETM----TWDAVEVTQTPPAPRYDHSAALHA-----NRYLIVFGGCSHSIFFNDLHVLDLQTN 229 (507)
Q Consensus 164 -----~~~~n~~~~~d~~t~----~W~~~~~~~~~p~~r~~~~~~~~~-----~~~l~v~GG~~~~~~~~~i~~~d~~~~ 229 (507)
..|+||+|.+++.-+ .|..+...|..|.+|-.|+++++. ..++|||||.++ ..+.|+|.+|+++.
T Consensus 162 pknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G-~RLgDLW~Ldl~Tl 240 (830)
T KOG4152|consen 162 PKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG-CRLGDLWTLDLDTL 240 (830)
T ss_pred cccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc-ccccceeEEeccee
Confidence 247899999998744 599999999999999999999983 246999999864 46789999999999
Q ss_pred cEEecccCCCCCCCCCccEEEEECCeEEEEeccCCC--------------CCcceEEEEECCCCcEEEeccC-CCCCCCC
Q 010551 230 EWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN--------------NGCQETIVLNMTKLAWSILTSV-KGRNPLA 294 (507)
Q Consensus 230 ~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~--------------~~~~~~~~~d~~~~~W~~v~~~-~~~~~~~ 294 (507)
+|.+++..|-.|.||+.|+++.|+|+||||||+... .+.+.+-.+|+.+..|..+-.. ......|
T Consensus 241 ~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiP 320 (830)
T KOG4152|consen 241 TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIP 320 (830)
T ss_pred ecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccc
Confidence 999999999999999999999999999999996311 1244566889999999986322 2222345
Q ss_pred CCCCceEEEEEcCceEEEEEccCCCC--------cCceEEEEECC
Q 010551 295 SEGLSVCSAIIEGEHHLVAFGGYNGK--------YNNEVFVMRLK 331 (507)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~v~GG~~~~--------~~~~~~~~~~~ 331 (507)
|.|..||++.+.. .||+..|.++. ...|+|.||.+
T Consensus 321 R~RAGHCAvAigt--RlYiWSGRDGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 321 RARAGHCAVAIGT--RLYIWSGRDGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred cccccceeEEecc--EEEEEeccchhhHhhccccchhhhhhhccc
Confidence 5566666666655 89999998753 45678888864
No 13
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=8.7e-36 Score=311.16 Aligned_cols=252 Identities=19% Similarity=0.304 Sum_probs=214.8
Q ss_pred EeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCC-CccCCceEEEEccCCceeeeccccccCCCccccCCCc
Q 010551 7 HLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL 85 (507)
Q Consensus 7 ~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~-~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~ 85 (507)
+|++...+|..++ +.| .+..|+++++++.||++||... ....++++.||+.+++|..++.+
T Consensus 268 ~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-------------- 329 (534)
T PHA03098 268 TNYSPLSEINTII---DIH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL-------------- 329 (534)
T ss_pred ecchhhhhccccc---Ccc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC--------------
Confidence 5788888999886 344 3556789999999999999765 34567999999999999887754
Q ss_pred CCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCC
Q 010551 86 EVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRK 165 (507)
Q Consensus 86 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~ 165 (507)
|.+|.+|++++++++||++||..... ..+++++||+.+++|+..+ ++|.+|.+|+++.++++||++||......
T Consensus 330 --~~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~~~ 403 (534)
T PHA03098 330 --IYPRKNPGVTVFNNRIYVIGGIYNSI-SLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKNDE 403 (534)
T ss_pred --CcccccceEEEECCEEEEEeCCCCCE-ecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCCCc
Confidence 44799999999999999999987433 4778999999999999987 89999999999999999999999865555
Q ss_pred ccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCC---CCCcEEEEECCCCcEEecccCCCCCC
Q 010551 166 LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI---FFNDLHVLDLQTNEWSQPEIKGDLVT 242 (507)
Q Consensus 166 ~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~---~~~~i~~~d~~~~~W~~~~~~~~~p~ 242 (507)
.++++++||+.+++|+.+. ++|.+|.+|+++.+ +++|||+||.+... .++.+++||+.+++|+.+ +++|.
T Consensus 404 ~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~ 476 (534)
T PHA03098 404 LLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL---SSLNF 476 (534)
T ss_pred ccceEEEEeCCCCeeeecC---CCCccccCceEEEE-CCEEEEECCccCCCCCcccceEEEecCCCCceeeC---CCCCc
Confidence 5799999999999999886 47889999998887 45699999986432 356799999999999997 56778
Q ss_pred CCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCC
Q 010551 243 GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG 289 (507)
Q Consensus 243 ~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~ 289 (507)
+|..++++.+++++||+||.+.....+++++||+.+++|+.++.+|.
T Consensus 477 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 477 PRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred ccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 89999999999999999998876667899999999999999876543
No 14
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=2e-36 Score=279.23 Aligned_cols=247 Identities=23% Similarity=0.392 Sum_probs=213.4
Q ss_pred CCCCccccceEEEE--CCEEEEEcC--CCC--CccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeE
Q 010551 23 ARPSPRYKHAAAVF--DQKLYIVGG--SRN--GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCM 96 (507)
Q Consensus 23 ~~p~~r~~~~~~~~--~~~iyi~GG--~~~--~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~ 96 (507)
++|.||.+.++++. .+.|++||| +++ ....|++|.||+.+++|+++... .+|+||++|.+
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp--------------n~P~pRsshq~ 127 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP--------------NAPPPRSSHQA 127 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC--------------CCcCCCcccee
Confidence 68899999999876 568999999 332 24568999999999999998763 56899999999
Q ss_pred EEEC-CEEEEEeccCCCCC-----CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCC---CCCcc
Q 010551 97 VKWG-TKLLILGGHYKKSS-----DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDR---SRKLL 167 (507)
Q Consensus 97 ~~~~-~~lyv~GG~~~~~~-----~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~---~~~~~ 167 (507)
|++- |.+|+|||.-...+ -..++|+||+.|++|+++...| .|.+|.+|-+++..++|++|||+.. +..|+
T Consensus 128 va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~Yy 206 (521)
T KOG1230|consen 128 VAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYY 206 (521)
T ss_pred EEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEe
Confidence 9996 89999999865544 3678999999999999998775 8999999999999999999999843 34578
Q ss_pred CcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCC---------CCCCCCcEEEEECCC-----CcEEe
Q 010551 168 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS---------HSIFFNDLHVLDLQT-----NEWSQ 233 (507)
Q Consensus 168 n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~---------~~~~~~~i~~~d~~~-----~~W~~ 233 (507)
||+|+||+++.+|+.+.+.|..|.||++|++.+..++.|||+||++ .+...+|+|.+++.. -.|..
T Consensus 207 NDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~k 286 (521)
T KOG1230|consen 207 NDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTK 286 (521)
T ss_pred eeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEee
Confidence 9999999999999999998889999999999999777799999985 346778999999988 57999
Q ss_pred cccCCCCCCCCCccEEEEEC-CeEEEEeccCCC---------CCcceEEEEECCCCcEEEe
Q 010551 234 PEIKGDLVTGRAGHAGITID-ENWYIVGGGDNN---------NGCQETIVLNMTKLAWSIL 284 (507)
Q Consensus 234 ~~~~~~~p~~r~~~~~~~~~-~~l~v~GG~~~~---------~~~~~~~~~d~~~~~W~~v 284 (507)
+...+-.|.||+++++++.. ++.+.|||.... ..+||+|.||+..+.|...
T Consensus 287 vkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 287 VKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred ccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 98889999999999999885 489999996441 2368999999999999875
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.4e-34 Score=285.57 Aligned_cols=271 Identities=19% Similarity=0.199 Sum_probs=205.3
Q ss_pred CCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEc--cCCceeeeccccccCCCccccCCCcCCCCCccceeEEEEC
Q 010551 23 ARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL--RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG 100 (507)
Q Consensus 23 ~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~--~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~ 100 (507)
++|.+|..+++++++++|||+||.. .+++++||+ .+++|..++.++. .+|..|++++++
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~----~~~~~~~d~~~~~~~W~~l~~~p~---------------~~R~~~~~~~~~ 63 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSA----GTSWYKLDLKKPSKGWQKIADFPG---------------GPRNQAVAAAID 63 (346)
T ss_pred CCCccccCceEEEECCEEEEEcccc----CCeeEEEECCCCCCCceECCCCCC---------------CCcccceEEEEC
Confidence 6899999999989999999999964 267999996 5788999886531 379999999999
Q ss_pred CEEEEEeccCCCC-----CCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEE-EECCEEEEEcCCCCCC----------
Q 010551 101 TKLLILGGHYKKS-----SDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVT-LVGSRLIIFGGEDRSR---------- 164 (507)
Q Consensus 101 ~~lyv~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~-~~~~~iy~~GG~~~~~---------- 164 (507)
++||++||..... ...+++++||+.+++|+.+.. .+|.+|.+++++ +++++||++||.+...
T Consensus 64 ~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~ 141 (346)
T TIGR03547 64 GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSA 141 (346)
T ss_pred CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhh
Confidence 9999999986432 136789999999999999862 467788888776 6899999999986320
Q ss_pred -----------------------CccCcEEEEECCCCcEEEeccCCCCCC-CCCCceEEEEcCCEEEEEcCCCCCC-CCC
Q 010551 165 -----------------------KLLNDVHFLDLETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVFGGCSHSI-FFN 219 (507)
Q Consensus 165 -----------------------~~~n~~~~~d~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~-~~~ 219 (507)
...+++++||+.+++|+.+.+ +|. +|.+++++.+ +++|||+||..... ...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~---~p~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~ 217 (346)
T TIGR03547 142 ADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE---NPFLGTAGSAIVHK-GNKLLLINGEIKPGLRTA 217 (346)
T ss_pred cCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc---CCCCcCCCceEEEE-CCEEEEEeeeeCCCccch
Confidence 124789999999999999864 564 6788877777 55699999985432 234
Q ss_pred cEEEEEC--CCCcEEecccCCCCCCCC-------CccEEEEECCeEEEEeccCCCC-----------------CcceEEE
Q 010551 220 DLHVLDL--QTNEWSQPEIKGDLVTGR-------AGHAGITIDENWYIVGGGDNNN-----------------GCQETIV 273 (507)
Q Consensus 220 ~i~~~d~--~~~~W~~~~~~~~~p~~r-------~~~~~~~~~~~l~v~GG~~~~~-----------------~~~~~~~ 273 (507)
+++.|++ .+++|+.+. ++|.+| ..|++++++++|||+||.+... ....+.+
T Consensus 218 ~~~~y~~~~~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (346)
T TIGR03547 218 EVKQYLFTGGKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEV 294 (346)
T ss_pred heEEEEecCCCceeeecC---CCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeE
Confidence 5666654 677999873 455443 4566788999999999975211 1235789
Q ss_pred EECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCC--CCcCceEEEEE
Q 010551 274 LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN--GKYNNEVFVMR 329 (507)
Q Consensus 274 ~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~--~~~~~~~~~~~ 329 (507)
||+.+++|+.+.++|. ++ ..++++++.+ .|||+||.+ +...++++.|.
T Consensus 295 yd~~~~~W~~~~~lp~----~~--~~~~~~~~~~--~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 295 YALDNGKWSKVGKLPQ----GL--AYGVSVSWNN--GVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred EEecCCcccccCCCCC----Cc--eeeEEEEcCC--EEEEEeccCCCCCEeeeEEEEE
Confidence 9999999999987743 22 2333444444 899999987 34678888764
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=3.2e-34 Score=279.85 Aligned_cols=263 Identities=18% Similarity=0.209 Sum_probs=198.6
Q ss_pred CccccceEEEECCEEEEEcCCCCC----------ccCCceEEEEccC--CceeeeccccccCCCccccCCCcCCCCCccc
Q 010551 26 SPRYKHAAAVFDQKLYIVGGSRNG----------RFLSDVQVFDLRS--LAWSNLRLETELDADKTEDSGLLEVLPPMSD 93 (507)
Q Consensus 26 ~~r~~~~~~~~~~~iyi~GG~~~~----------~~~~~~~~~d~~~--~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~ 93 (507)
..+.++.++++++.|||+||.+.. ...+++++|+... ..|..++.+ |.+|..
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~l----------------p~~r~~ 65 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQL----------------PYEAAY 65 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccC----------------Cccccc
Confidence 457899999999999999997543 2456899886332 368887654 557888
Q ss_pred eeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEE-EeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEE
Q 010551 94 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCG-VMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF 172 (507)
Q Consensus 94 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~ 172 (507)
+++++++++||++||...... .++++.||+.+++|. .....+++|.+|..|++++++++||++||.... ...+++++
T Consensus 66 ~~~~~~~~~lyviGG~~~~~~-~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~ 143 (323)
T TIGR03548 66 GASVSVENGIYYIGGSNSSER-FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYL 143 (323)
T ss_pred eEEEEECCEEEEEcCCCCCCC-ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEE
Confidence 888999999999999875443 788999999999983 222234899999999999999999999997533 34789999
Q ss_pred EECCCCcEEEeccCCCCC-CCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCC--CCCCCCCccEE
Q 010551 173 LDLETMTWDAVEVTQTPP-APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG--DLVTGRAGHAG 249 (507)
Q Consensus 173 ~d~~t~~W~~~~~~~~~p-~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~--~~p~~r~~~~~ 249 (507)
||+.+++|+.+++ +| .+|..|+++++ +++||||||.+.. ..+++++||+.+++|+.+.... ..|.++..++.
T Consensus 144 yd~~~~~W~~~~~---~p~~~r~~~~~~~~-~~~iYv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~ 218 (323)
T TIGR03548 144 FNLETQEWFELPD---FPGEPRVQPVCVKL-QNELYVFGGGSNI-AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAAS 218 (323)
T ss_pred EcCCCCCeeECCC---CCCCCCCcceEEEE-CCEEEEEcCCCCc-cccceEEEecCCCeeEECCCCCCCCCceeccceeE
Confidence 9999999999874 44 36888877777 5569999998643 3467899999999999975432 23444445554
Q ss_pred EE-ECCeEEEEeccCCCC--------------------------------CcceEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551 250 IT-IDENWYIVGGGDNNN--------------------------------GCQETIVLNMTKLAWSILTSVKGRNPLASE 296 (507)
Q Consensus 250 ~~-~~~~l~v~GG~~~~~--------------------------------~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~ 296 (507)
++ .+++|||+||.+... ..+++++||+.+++|+.++.+|.. +|.
T Consensus 219 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~---~r~ 295 (323)
T TIGR03548 219 IKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFF---ARC 295 (323)
T ss_pred EEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccc---ccC
Confidence 44 478999999976321 125799999999999998865421 333
Q ss_pred CCceEEEEEcCceEEEEEccCC
Q 010551 297 GLSVCSAIIEGEHHLVAFGGYN 318 (507)
Q Consensus 297 ~~~~~~~~~~~~~~l~v~GG~~ 318 (507)
+ +.++.+++ .||++||..
T Consensus 296 ~--~~~~~~~~--~iyv~GG~~ 313 (323)
T TIGR03548 296 G--AALLLTGN--NIFSINGEL 313 (323)
T ss_pred c--hheEEECC--EEEEEeccc
Confidence 3 33445554 799999965
No 17
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=294.29 Aligned_cols=252 Identities=31% Similarity=0.527 Sum_probs=221.5
Q ss_pred cCCCCCccceeEEEECCEEEEEeccCCCCCCcc-eEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCC
Q 010551 85 LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM-IVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRS 163 (507)
Q Consensus 85 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~-~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~ 163 (507)
...|.+|.+|+++.+++++|||||......... ++|+||..+..|.....+|..|.+|.+|+++.++++||+|||.+..
T Consensus 55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~ 134 (482)
T KOG0379|consen 55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK 134 (482)
T ss_pred CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence 356889999999999999999999987666333 6999999999999999999999999999999999999999999875
Q ss_pred CCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCC-CCCcEEEEECCCCcEEecccCCCCCC
Q 010551 164 RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIKGDLVT 242 (507)
Q Consensus 164 ~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~~~~p~ 242 (507)
....++++.||+.|.+|..+.+.+.+|++|.+|++++++ +++|||||.+... ..|++|+||+.+.+|..+.+.++.|.
T Consensus 135 ~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~ 213 (482)
T KOG0379|consen 135 YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS 213 (482)
T ss_pred CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCcccceeeeeeeccccccceecccCCCCCC
Confidence 556899999999999999999999999999999999997 6799999998776 89999999999999999999999999
Q ss_pred CCCccEEEEECCeEEEEeccC-CCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCC-
Q 010551 243 GRAGHAGITIDENWYIVGGGD-NNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK- 320 (507)
Q Consensus 243 ~r~~~~~~~~~~~l~v~GG~~-~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~- 320 (507)
||.+|++++++++++||||.+ +...++|+|.||+.+..|..+. ..+..|.+|.+|..+ +. +..++++||....
T Consensus 214 pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~-~~g~~p~~R~~h~~~--~~--~~~~~l~gG~~~~~ 288 (482)
T KOG0379|consen 214 PRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP-TGGDLPSPRSGHSLT--VS--GDHLLLFGGGTDPK 288 (482)
T ss_pred CCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeecc-ccCCCCCCcceeeeE--EE--CCEEEEEcCCcccc
Confidence 999999999999999999988 6677899999999999999654 445557777777655 22 3468888887762
Q ss_pred --cCceEEEEECCCCCCCCCcccC
Q 010551 321 --YNNEVFVMRLKPRDIPRPKIFQ 342 (507)
Q Consensus 321 --~~~~~~~~~~~~~~w~~~~~~~ 342 (507)
...+.|.|+.....|.......
T Consensus 289 ~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 289 QEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred cccccccccccccccceeeeeccc
Confidence 6899999999999998665443
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=6.3e-34 Score=282.76 Aligned_cols=283 Identities=18% Similarity=0.218 Sum_probs=210.8
Q ss_pred ceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEcc--CCceeeeccccccCCCccccCCCcCCCCCc
Q 010551 14 LWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLR--SLAWSNLRLETELDADKTEDSGLLEVLPPM 91 (507)
Q Consensus 14 ~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~--~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r 91 (507)
.++.+| ++|.||..+++++++++|||+||... +.++.||+. ++.|..+++++ ..+|
T Consensus 18 ~~~~l~---~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p---------------~~~r 75 (376)
T PRK14131 18 NAEQLP---DLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFP---------------GGPR 75 (376)
T ss_pred ecccCC---CCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCC---------------CCCc
Confidence 456677 79999998899999999999999643 458999986 47899887553 2379
Q ss_pred cceeEEEECCEEEEEeccCCC-----CCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEE-ECCEEEEEcCCCCC--
Q 010551 92 SDHCMVKWGTKLLILGGHYKK-----SSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTL-VGSRLIIFGGEDRS-- 163 (507)
Q Consensus 92 ~~~~~~~~~~~lyv~GG~~~~-----~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~iy~~GG~~~~-- 163 (507)
.+|++++++++||++||.... ....+++++||+.+++|+.+.+ .+|.++.+|++++ .+++||+|||.+..
T Consensus 76 ~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~ 153 (376)
T PRK14131 76 EQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIF 153 (376)
T ss_pred ccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHH
Confidence 999999999999999998641 1235789999999999999873 3577788888777 79999999997531
Q ss_pred -------------------------------CCccCcEEEEECCCCcEEEeccCCCCCC-CCCCceEEEEcCCEEEEEcC
Q 010551 164 -------------------------------RKLLNDVHFLDLETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVFGG 211 (507)
Q Consensus 164 -------------------------------~~~~n~~~~~d~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG 211 (507)
....+++++||+.+++|+.+.+ +|. +|.+|+++.+ +++|||+||
T Consensus 154 ~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~---~p~~~~~~~a~v~~-~~~iYv~GG 229 (376)
T PRK14131 154 DGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE---SPFLGTAGSAVVIK-GNKLWLING 229 (376)
T ss_pred HHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc---CCCCCCCcceEEEE-CCEEEEEee
Confidence 0124789999999999998763 554 6777777776 556999999
Q ss_pred CCCC-CCCCcEEE--EECCCCcEEecccCCCCCCCCC--------ccEEEEECCeEEEEeccCCCC--------------
Q 010551 212 CSHS-IFFNDLHV--LDLQTNEWSQPEIKGDLVTGRA--------GHAGITIDENWYIVGGGDNNN-------------- 266 (507)
Q Consensus 212 ~~~~-~~~~~i~~--~d~~~~~W~~~~~~~~~p~~r~--------~~~~~~~~~~l~v~GG~~~~~-------------- 266 (507)
.... ...++++. ||+.+++|..+. ++|.+|. .+.+++++++|||+||.+...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 306 (376)
T PRK14131 230 EIKPGLRTDAVKQGKFTGNNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHE 306 (376)
T ss_pred eECCCcCChhheEEEecCCCcceeecC---CCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCccccc
Confidence 7432 33455554 566889999873 4555543 233567899999999965321
Q ss_pred Cc---ceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCC--CcCceEEEEECCCCCC
Q 010551 267 GC---QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG--KYNNEVFVMRLKPRDI 335 (507)
Q Consensus 267 ~~---~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~~~~~~~~~~~w 335 (507)
.. ..+.+||+.+++|+.++.+|. ++.. +.++.+++ .|||+||... ...++|++|.+..+.+
T Consensus 307 ~~~~~~~~e~yd~~~~~W~~~~~lp~----~r~~--~~av~~~~--~iyv~GG~~~~~~~~~~v~~~~~~~~~~ 372 (376)
T PRK14131 307 GLKKSWSDEIYALVNGKWQKVGELPQ----GLAY--GVSVSWNN--GVLLIGGETAGGKAVSDVTLLSWDGKKL 372 (376)
T ss_pred CCcceeehheEEecCCcccccCcCCC----Cccc--eEEEEeCC--EEEEEcCCCCCCcEeeeEEEEEEcCCEE
Confidence 11 235689999999999877654 3333 33445555 7999999753 4688999999876543
No 19
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.2e-33 Score=275.77 Aligned_cols=236 Identities=17% Similarity=0.212 Sum_probs=189.8
Q ss_pred CCeEee-CCC-CceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCcee-eeccccccCCCccc
Q 010551 4 GSWHLE-LPY-DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWS-NLRLETELDADKTE 80 (507)
Q Consensus 4 ~~~~~d-~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~-~~~~~~~~~~~~~~ 80 (507)
++|+|+ +.. .+|..++ ++|.+|..|+++++++.||++||.......++++.||+.+++|. .....+
T Consensus 40 ~v~~~~~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~-------- 108 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDG---QLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIG-------- 108 (323)
T ss_pred eeEEEecCCCceeEEEcc---cCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC--------
Confidence 577775 332 2799988 79999998889999999999999887777899999999999983 112221
Q ss_pred cCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCC-CCCcCcEEEEECCEEEEEcC
Q 010551 81 DSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP-VTRGGHSVTLVGSRLIIFGG 159 (507)
Q Consensus 81 ~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~iy~~GG 159 (507)
..|.+|..|++++++++||++||..... ..+++++||+.+++|+.++ ++| .+|..+++++++++||+|||
T Consensus 109 -----~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~~iYv~GG 179 (323)
T TIGR03548 109 -----NLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELP---DFPGEPRVQPVCVKLQNELYVFGG 179 (323)
T ss_pred -----CCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECC---CCCCCCCCcceEEEECCEEEEEcC
Confidence 3366789999999999999999975433 3788999999999999987 566 47888999999999999999
Q ss_pred CCCCCCccCcEEEEECCCCcEEEeccCC--CCCCCCCCceEEEEcCCEEEEEcCCCCCC---------------------
Q 010551 160 EDRSRKLLNDVHFLDLETMTWDAVEVTQ--TPPAPRYDHSAALHANRYLIVFGGCSHSI--------------------- 216 (507)
Q Consensus 160 ~~~~~~~~n~~~~~d~~t~~W~~~~~~~--~~p~~r~~~~~~~~~~~~l~v~GG~~~~~--------------------- 216 (507)
.+.. ..+++++||+.+++|+.+.+.. ..|..+..++++++.+++|||+||.+...
T Consensus 180 ~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (323)
T TIGR03548 180 GSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKK 257 (323)
T ss_pred CCCc--cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHH
Confidence 8643 2467899999999999997642 23444556666677778899999986421
Q ss_pred -----------CCCcEEEEECCCCcEEecccCCCCC-CCCCccEEEEECCeEEEEeccCC
Q 010551 217 -----------FFNDLHVLDLQTNEWSQPEIKGDLV-TGRAGHAGITIDENWYIVGGGDN 264 (507)
Q Consensus 217 -----------~~~~i~~~d~~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~l~v~GG~~~ 264 (507)
..+++++||+.+++|+.+. ++| .+|+.++++.++++||++||...
T Consensus 258 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 258 EYFLKPPEWYNWNRKILIYNVRTGKWKSIG---NSPFFARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred HHhCCCccccCcCceEEEEECCCCeeeEcc---cccccccCchheEEECCEEEEEecccc
Confidence 2367999999999999973 455 58999999999999999999543
No 20
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3e-33 Score=292.07 Aligned_cols=265 Identities=20% Similarity=0.200 Sum_probs=212.9
Q ss_pred CEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcc
Q 010551 38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM 117 (507)
Q Consensus 38 ~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 117 (507)
..+++.||.. .....+..|++.+.+|..++..+ .+..|+++++++.||++||........+
T Consensus 251 ~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~lyv~GG~~~~~~~~~ 311 (534)
T PHA03098 251 SIIYIHITMS--IFTYNYITNYSPLSEINTIIDIH-----------------YVYCFGSVVLNNVIYFIGGMNKNNLSVN 311 (534)
T ss_pred cceEeecccc--hhhceeeecchhhhhcccccCcc-----------------ccccceEEEECCEEEEECCCcCCCCeec
Confidence 4456666644 22345667888888888765321 2456789999999999999976665567
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCce
Q 010551 118 IVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 197 (507)
Q Consensus 118 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~ 197 (507)
+++.||+.+++|..++ ++|.+|.+|+++.++++||++||.+. ....+++++||+.+++|+.++ ++|.+|++|+
T Consensus 312 ~v~~yd~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~ 384 (534)
T PHA03098 312 SVVSYDTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYN-SISLNTVESWKPGESKWREEP---PLIFPRYNPC 384 (534)
T ss_pred cEEEEeCCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCC-CEecceEEEEcCCCCceeeCC---CcCcCCccce
Confidence 8999999999999887 78999999999999999999999874 335789999999999999886 4788999999
Q ss_pred EEEEcCCEEEEEcCCCC-CCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCC---cceEEE
Q 010551 198 AALHANRYLIVFGGCSH-SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNG---CQETIV 273 (507)
Q Consensus 198 ~~~~~~~~l~v~GG~~~-~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~---~~~~~~ 273 (507)
++.++ ++|||+||... ...++++++||+.+++|+.+ .++|.+|.+|+++.+++++||+||.+.... ++++++
T Consensus 385 ~~~~~-~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 460 (534)
T PHA03098 385 VVNVN-NLIYVIGGISKNDELLKTVECFSLNTNKWSKG---SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVES 460 (534)
T ss_pred EEEEC-CEEEEECCcCCCCcccceEEEEeCCCCeeeec---CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEE
Confidence 98874 56999999743 34578999999999999986 578889999999999999999999764432 567999
Q ss_pred EECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCC-cCceEEEEECCCCCCCCCcc
Q 010551 274 LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKI 340 (507)
Q Consensus 274 ~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~w~~~~~ 340 (507)
||+.+++|+.++.++. ++.++. ++.++ +.|||+||.++. ..+++++||+..+.|...+.
T Consensus 461 yd~~~~~W~~~~~~~~----~r~~~~--~~~~~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 461 YNPVTNKWTELSSLNF----PRINAS--LCIFN--NKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred ecCCCCceeeCCCCCc----ccccce--EEEEC--CEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 9999999999876642 333443 34444 479999998755 37899999999999986654
No 21
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=9.3e-33 Score=272.55 Aligned_cols=245 Identities=22% Similarity=0.356 Sum_probs=190.8
Q ss_pred CCCeEeeC--CCCceEEeecCCCCC-CccccceEEEECCEEEEEcCCCCC------ccCCceEEEEccCCceeeeccccc
Q 010551 3 SGSWHLEL--PYDLWVTLPVSGARP-SPRYKHAAAVFDQKLYIVGGSRNG------RFLSDVQVFDLRSLAWSNLRLETE 73 (507)
Q Consensus 3 ~~~~~~d~--~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~iyi~GG~~~~------~~~~~~~~~d~~~~~W~~~~~~~~ 73 (507)
..+|+||+ ..++|..++ ++| .+|..|++++++++||++||.... ..++++++||+.+++|+.++..
T Consensus 29 ~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~-- 103 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTR-- 103 (346)
T ss_pred CeeEEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCC--
Confidence 46899996 678999999 688 589999999999999999997532 2468999999999999998632
Q ss_pred cCCCccccCCCcCCCCCccceeEE-EECCEEEEEeccCCCC---------------------------------CCcceE
Q 010551 74 LDADKTEDSGLLEVLPPMSDHCMV-KWGTKLLILGGHYKKS---------------------------------SDSMIV 119 (507)
Q Consensus 74 ~~~~~~~~~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~---------------------------------~~~~~~ 119 (507)
.|.+|.+|+++ +++++||++||..... ...+++
T Consensus 104 -------------~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (346)
T TIGR03547 104 -------------SPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNV 170 (346)
T ss_pred -------------CCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceE
Confidence 14467788777 7899999999986321 013789
Q ss_pred EEEECCCCcEEEeecCCCCCC-CCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEE--CCCCcEEEeccCCCCCCCC---
Q 010551 120 RFIDLETNLCGVMETSGKVPV-TRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD--LETMTWDAVEVTQTPPAPR--- 193 (507)
Q Consensus 120 ~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d--~~t~~W~~~~~~~~~p~~r--- 193 (507)
++||+.+++|+.+. +||. +|.+++++.++++||++||.........+++.|+ +.+++|+.+.+ +|.+|
T Consensus 171 ~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~---m~~~r~~~ 244 (346)
T TIGR03547 171 LSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP---LPPPKSSS 244 (346)
T ss_pred EEEECCCCceeECc---cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC---CCCCCCCc
Confidence 99999999999987 7875 6889999999999999999865433345666665 46779999875 44443
Q ss_pred ----CCceEEEEcCCEEEEEcCCCCCC-----------------CCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE
Q 010551 194 ----YDHSAALHANRYLIVFGGCSHSI-----------------FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI 252 (507)
Q Consensus 194 ----~~~~~~~~~~~~l~v~GG~~~~~-----------------~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~ 252 (507)
.+|+++++ +++|||+||.+... ..+.+.+||+.+++|+.+ +++|.+|..++++++
T Consensus 245 ~~~~~~~~a~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~---~~lp~~~~~~~~~~~ 320 (346)
T TIGR03547 245 QEGLAGAFAGIS-NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKV---GKLPQGLAYGVSVSW 320 (346)
T ss_pred cccccEEeeeEE-CCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccccc---CCCCCCceeeEEEEc
Confidence 34445566 56699999975211 123578999999999987 678889999998899
Q ss_pred CCeEEEEeccCCC-CCcceEEEEE
Q 010551 253 DENWYIVGGGDNN-NGCQETIVLN 275 (507)
Q Consensus 253 ~~~l~v~GG~~~~-~~~~~~~~~d 275 (507)
+++|||+||.+.. ..+++++.|.
T Consensus 321 ~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 321 NNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred CCEEEEEeccCCCCCEeeeEEEEE
Confidence 9999999998654 3467777664
No 22
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.6e-32 Score=272.65 Aligned_cols=254 Identities=22% Similarity=0.336 Sum_probs=195.8
Q ss_pred CCCeEeeCC--CCceEEeecCCCCC-CccccceEEEECCEEEEEcCCCC------CccCCceEEEEccCCceeeeccccc
Q 010551 3 SGSWHLELP--YDLWVTLPVSGARP-SPRYKHAAAVFDQKLYIVGGSRN------GRFLSDVQVFDLRSLAWSNLRLETE 73 (507)
Q Consensus 3 ~~~~~~d~~--~~~W~~~~~~~~~p-~~r~~~~~~~~~~~iyi~GG~~~------~~~~~~~~~~d~~~~~W~~~~~~~~ 73 (507)
..+|+||+. .+.|..++ ++| .+|.+|+++++++.||++||... ...++++++||+.+++|+.++...
T Consensus 50 ~~~~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~- 125 (376)
T PRK14131 50 TSWYKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRS- 125 (376)
T ss_pred CeEEEEECCCCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCC-
Confidence 347899986 47999998 566 58999999999999999999754 134689999999999999987421
Q ss_pred cCCCccccCCCcCCCCCccceeEEE-ECCEEEEEeccCCCC---------------------------------CCcceE
Q 010551 74 LDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKS---------------------------------SDSMIV 119 (507)
Q Consensus 74 ~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~---------------------------------~~~~~~ 119 (507)
|.++.+|++++ .+++||++||..... ...+++
T Consensus 126 --------------p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v 191 (376)
T PRK14131 126 --------------PVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEV 191 (376)
T ss_pred --------------CCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceE
Confidence 45677888877 799999999975320 024689
Q ss_pred EEEECCCCcEEEeecCCCCCC-CCcCcEEEEECCEEEEEcCCCCCCCccCcEEE--EECCCCcEEEeccCCCCCCCCCC-
Q 010551 120 RFIDLETNLCGVMETSGKVPV-TRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF--LDLETMTWDAVEVTQTPPAPRYD- 195 (507)
Q Consensus 120 ~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~--~d~~t~~W~~~~~~~~~p~~r~~- 195 (507)
++||+.+++|+.+. ++|. +|.+++++.++++||++||........++++. ||+.+++|..+.. +|.+|.+
T Consensus 192 ~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~---~p~~~~~~ 265 (376)
T PRK14131 192 LSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD---LPPAPGGS 265 (376)
T ss_pred EEEECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC---CCCCCcCC
Confidence 99999999999886 6775 78888999999999999997554334555554 5678999999874 4545432
Q ss_pred ------ceEEEEcCCEEEEEcCCCCCC-----------------CCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE
Q 010551 196 ------HSAALHANRYLIVFGGCSHSI-----------------FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI 252 (507)
Q Consensus 196 ------~~~~~~~~~~l~v~GG~~~~~-----------------~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~ 252 (507)
+.++++-+++|||+||.+... ....+.+||+.+++|+.+ +++|.+|..++++.+
T Consensus 266 ~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~---~~lp~~r~~~~av~~ 342 (376)
T PRK14131 266 SQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV---GELPQGLAYGVSVSW 342 (376)
T ss_pred cCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc---CcCCCCccceEEEEe
Confidence 122333366799999975321 112467899999999986 678999999999999
Q ss_pred CCeEEEEeccCCC-CCcceEEEEECCCCcEEE
Q 010551 253 DENWYIVGGGDNN-NGCQETIVLNMTKLAWSI 283 (507)
Q Consensus 253 ~~~l~v~GG~~~~-~~~~~~~~~d~~~~~W~~ 283 (507)
+++|||+||.... ..+++++.|++..+.+..
T Consensus 343 ~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 343 NNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred CCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 9999999997543 457899999988877653
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=254.16 Aligned_cols=216 Identities=28% Similarity=0.519 Sum_probs=190.4
Q ss_pred CCeEeeCCCCceEEeecCCCCCCccccceEEEEC-CEEEEEcCCC--CC----ccCCceEEEEccCCceeeeccccccCC
Q 010551 4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFD-QKLYIVGGSR--NG----RFLSDVQVFDLRSLAWSNLRLETELDA 76 (507)
Q Consensus 4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~iyi~GG~~--~~----~~~~~~~~~d~~~~~W~~~~~~~~~~~ 76 (507)
+.|.||...+.|+.+... ..|+||.+|.+|++. +.+|||||-. +. ....++|+||+.++.|+++...
T Consensus 99 dLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~----- 172 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG----- 172 (521)
T ss_pred eeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccC-----
Confidence 689999999999999754 578899999999995 8999999932 21 3357999999999999999875
Q ss_pred CccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCC---CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CC
Q 010551 77 DKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS---DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GS 152 (507)
Q Consensus 77 ~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~---~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~ 152 (507)
+.|.||.+|-|++...+|++|||+..... +.|++|+||++|-+|+++.+.|..|.+|.++++++. .+
T Consensus 173 ---------g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg 243 (521)
T KOG1230|consen 173 ---------GGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQG 243 (521)
T ss_pred ---------CCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCC
Confidence 45889999999999999999999865432 789999999999999999998889999999998888 89
Q ss_pred EEEEEcCCCC--------CCCccCcEEEEECCC-----CcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCC-----
Q 010551 153 RLIIFGGEDR--------SRKLLNDVHFLDLET-----MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH----- 214 (507)
Q Consensus 153 ~iy~~GG~~~--------~~~~~n~~~~~d~~t-----~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~----- 214 (507)
.||++||++. ....++|++.+++.. ..|..+.+.|..|.||+++++++..+++.|.|||..+
T Consensus 244 ~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeee 323 (521)
T KOG1230|consen 244 GIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEE 323 (521)
T ss_pred cEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccc
Confidence 9999999863 345689999999988 6899999999999999999999999988999999853
Q ss_pred ----CCCCCcEEEEECCCCcEEec
Q 010551 215 ----SIFFNDLHVLDLQTNEWSQP 234 (507)
Q Consensus 215 ----~~~~~~i~~~d~~~~~W~~~ 234 (507)
+.++||+|.||+..+.|...
T Consensus 324 Esl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 324 ESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred hhhhhhhhhhhhheecccchhhHh
Confidence 36789999999999999874
No 24
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=9.6e-32 Score=274.54 Aligned_cols=211 Identities=18% Similarity=0.247 Sum_probs=184.4
Q ss_pred EEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCC
Q 010551 33 AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK 112 (507)
Q Consensus 33 ~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~ 112 (507)
++.+++.||++||.+.....++++.|||.+++|..+++++ .+|..+++++++++||++||...
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~----------------~~r~~~~~v~~~~~iYviGG~~~- 329 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMN----------------SPRLYASGVPANNKLYVVGGLPN- 329 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCC----------------chhhcceEEEECCEEEEECCcCC-
Confidence 3457999999999876667789999999999999998764 47999999999999999999753
Q ss_pred CCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCC
Q 010551 113 SSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP 192 (507)
Q Consensus 113 ~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~ 192 (507)
.++++.||+.+++|+.++ +||.+|.++++++++++||++||.+.. .+.+.+|||.+++|+.+++ +|.+
T Consensus 330 ---~~sve~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~---m~~~ 397 (480)
T PHA02790 330 ---PTSVERWFHGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPS---TYYP 397 (480)
T ss_pred ---CCceEEEECCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCC---CCCc
Confidence 246999999999999987 899999999999999999999998643 3679999999999999874 7889
Q ss_pred CCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEE
Q 010551 193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI 272 (507)
Q Consensus 193 r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~ 272 (507)
|..|+++++ +++|||+||. +.+||+.+++|+.+ .++|.+|..+++++++++|||+||.++....+.+.
T Consensus 398 r~~~~~~~~-~~~IYv~GG~--------~e~ydp~~~~W~~~---~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve 465 (480)
T PHA02790 398 HYKSCALVF-GRRLFLVGRN--------AEFYCESSNTWTLI---DDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIE 465 (480)
T ss_pred cccceEEEE-CCEEEEECCc--------eEEecCCCCcEeEc---CCCCCCccccEEEEECCEEEEECCcCCCcccceEE
Confidence 999998888 4569999983 57899999999986 57888999999999999999999987555567899
Q ss_pred EEECCCCcEEEe
Q 010551 273 VLNMTKLAWSIL 284 (507)
Q Consensus 273 ~~d~~~~~W~~v 284 (507)
.||+.+++|+..
T Consensus 466 ~Yd~~~~~W~~~ 477 (480)
T PHA02790 466 VYNNRTYSWNIW 477 (480)
T ss_pred EEECCCCeEEec
Confidence 999999999864
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.2e-30 Score=246.58 Aligned_cols=259 Identities=24% Similarity=0.407 Sum_probs=218.1
Q ss_pred eEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCC-CCccCCceEEEEccCCceeeeccccccCCCccccCCC
Q 010551 6 WHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSR-NGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL 84 (507)
Q Consensus 6 ~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~-~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~ 84 (507)
=+||..+++|.....-|+.|++-..|.++..|.+||+|||.- -+.++|++|.+-...-.|+++.+.....
T Consensus 60 HvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~n--------- 130 (830)
T KOG4152|consen 60 HVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKN--------- 130 (830)
T ss_pred hhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCC---------
Confidence 368999999999999999999999999999999999999954 3788999988888777888887655330
Q ss_pred cCCCCCccceeEEEECCEEEEEeccCCCCC--------CcceEEEEECCCC----cEEEeecCCCCCCCCcCcEEEEE--
Q 010551 85 LEVLPPMSDHCMVKWGTKLLILGGHYKKSS--------DSMIVRFIDLETN----LCGVMETSGKVPVTRGGHSVTLV-- 150 (507)
Q Consensus 85 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~--------~~~~~~~yd~~t~----~W~~~~~~g~~p~~r~~~~~~~~-- 150 (507)
..+|-||.+|+...++++.|+|||..++.. +++++|++++.-+ .|....+.|..|.+|..|+++.+
T Consensus 131 G~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~e 210 (830)
T KOG4152|consen 131 GPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTE 210 (830)
T ss_pred CCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEe
Confidence 345569999999999999999999854432 6899999998866 49999999999999999999887
Q ss_pred ----CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCC-------------
Q 010551 151 ----GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS------------- 213 (507)
Q Consensus 151 ----~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~------------- 213 (507)
..++|+|||.++ +.+.|+|.+|+++..|.+++..|..|.||+-|+++.|+|+ +|||||.-
T Consensus 211 KDs~~skmvvyGGM~G--~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnK-MyvfGGWVPl~~~~~~~~~he 287 (830)
T KOG4152|consen 211 KDSKKSKMVVYGGMSG--CRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNK-MYVFGGWVPLVMDDVKVATHE 287 (830)
T ss_pred ccCCcceEEEEccccc--ccccceeEEecceeecccccccCCCCCCcccccceeecce-eEEecceeeeecccccccccc
Confidence 238999999875 4689999999999999999999999999999999999665 99999962
Q ss_pred -CCCCCCcEEEEECCCCcEEeccc----CCCCCCCCCccEEEEECCeEEEEeccCCC-------CCcceEEEEEC
Q 010551 214 -HSIFFNDLHVLDLQTNEWSQPEI----KGDLVTGRAGHAGITIDENWYIVGGGDNN-------NGCQETIVLNM 276 (507)
Q Consensus 214 -~~~~~~~i~~~d~~~~~W~~~~~----~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-------~~~~~~~~~d~ 276 (507)
.=.|++.+-++|+.+..|..+.. ....|.+|++|+++.++.+||+..|.++. -++.|+|.+|.
T Consensus 288 kEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT 362 (830)
T KOG4152|consen 288 KEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT 362 (830)
T ss_pred ceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence 01477889999999999998532 12378899999999999999999996543 23567888874
No 26
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=1.2e-29 Score=259.13 Aligned_cols=191 Identities=20% Similarity=0.380 Sum_probs=168.9
Q ss_pred CCCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccC
Q 010551 3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS 82 (507)
Q Consensus 3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~ 82 (507)
..+|+|||.++.|..++ ++|.+|..++++++++.||++||.++ .++++.||+.+++|..++++
T Consensus 287 ~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l----------- 349 (480)
T PHA02790 287 NNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSL----------- 349 (480)
T ss_pred CeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCC-----------
Confidence 35899999999999999 79999999999999999999999753 26799999999999998866
Q ss_pred CCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCC
Q 010551 83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDR 162 (507)
Q Consensus 83 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~ 162 (507)
|.+|.+|++++++++||++||.... .+++++|||.+++|+.++ +||.+|.++++++++++||++||.
T Consensus 350 -----~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~IYv~GG~-- 416 (480)
T PHA02790 350 -----LKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRRLFLVGRN-- 416 (480)
T ss_pred -----CCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCC---CCCCccccceEEEECCEEEEECCc--
Confidence 4479999999999999999997543 356999999999999987 899999999999999999999983
Q ss_pred CCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEec
Q 010551 163 SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP 234 (507)
Q Consensus 163 ~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~ 234 (507)
+.+||+.+++|+.++ ++|.+|..++++++++ +|||+||.++....+.+.+||+.+++|+..
T Consensus 417 -------~e~ydp~~~~W~~~~---~m~~~r~~~~~~v~~~-~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 417 -------AEFYCESSNTWTLID---DPIYPRDNPELIIVDN-KLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred -------eEEecCCCCcEeEcC---CCCCCccccEEEEECC-EEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 578999999999987 4788999999998855 599999987665568899999999999875
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.80 E-value=1.3e-17 Score=153.43 Aligned_cols=273 Identities=19% Similarity=0.246 Sum_probs=194.4
Q ss_pred CCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccC--CceeeeccccccCCCccccCCCcCCCCCccceeEEEEC
Q 010551 23 ARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRS--LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG 100 (507)
Q Consensus 23 ~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~--~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~ 100 (507)
+.|.+-..-+.+.+++.+||-=|..+ ..+|.+|+.. ..|+++...+ -.+|.+..+++++
T Consensus 32 dlPvg~KnG~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~Fp---------------G~~rnqa~~a~~~ 92 (381)
T COG3055 32 DLPVGFKNGAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFP---------------GGARNQAVAAVIG 92 (381)
T ss_pred CCCccccccccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCC---------------CcccccchheeeC
Confidence 67888777788888999999766332 3578888865 4799998765 3489999999999
Q ss_pred CEEEEEeccCCCCC----CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCC-------------
Q 010551 101 TKLLILGGHYKKSS----DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDR------------- 162 (507)
Q Consensus 101 ~~lyv~GG~~~~~~----~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~------------- 162 (507)
++||+|||...... ..+++|+||+.+++|.++.+ ..|....+++++..++ +||++||.+.
T Consensus 93 ~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a 170 (381)
T COG3055 93 GKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAA 170 (381)
T ss_pred CeEEEeeccccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhh
Confidence 99999999864433 57899999999999999987 4577788899999888 9999999751
Q ss_pred --------------------CCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCC-CCCCCCcE
Q 010551 163 --------------------SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDL 221 (507)
Q Consensus 163 --------------------~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~~i 221 (507)
+..+..++..|++.++.|+.+-. .+..++++ +++++.++.+.++-|.- ..-++..+
T Consensus 171 ~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~ 247 (381)
T COG3055 171 GKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--NPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEV 247 (381)
T ss_pred cccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc--CcccCccC-cceeecCCeEEEEcceecCCccccce
Confidence 11345679999999999998853 23455666 55666677677777753 34455667
Q ss_pred EEEECC--CCcEEecccCCCCCCCCC-------ccEEEEECCeEEEEeccC--------------CC-----CCcceEEE
Q 010551 222 HVLDLQ--TNEWSQPEIKGDLVTGRA-------GHAGITIDENWYIVGGGD--------------NN-----NGCQETIV 273 (507)
Q Consensus 222 ~~~d~~--~~~W~~~~~~~~~p~~r~-------~~~~~~~~~~l~v~GG~~--------------~~-----~~~~~~~~ 273 (507)
+++++. ..+|..+. +.|.+.. ++-.-..++.++|.||.+ .+ ...+++|+
T Consensus 248 k~~~~~~~~~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~ 324 (381)
T COG3055 248 KQADFGGDNLKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYI 324 (381)
T ss_pred eEEEeccCceeeeecc---CCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEE
Confidence 777765 45798873 3443322 222334467888998853 11 12457888
Q ss_pred EECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCC--CCcCceEEEEECCC
Q 010551 274 LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN--GKYNNEVFVMRLKP 332 (507)
Q Consensus 274 ~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~--~~~~~~~~~~~~~~ 332 (507)
|| .+.|+.+..+|... ..-++ +..++.++++||.+ +...+.|+.+....
T Consensus 325 ~d--~g~Wk~~GeLp~~l------~YG~s--~~~nn~vl~IGGE~~~Gka~~~v~~l~~~g 375 (381)
T COG3055 325 FD--NGSWKIVGELPQGL------AYGVS--LSYNNKVLLIGGETSGGKATTRVYSLSWDG 375 (381)
T ss_pred Ec--CCceeeecccCCCc------cceEE--EecCCcEEEEccccCCCeeeeeEEEEEEcC
Confidence 88 89999998887531 11122 22244688899976 45677887776543
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.79 E-value=1.6e-17 Score=152.73 Aligned_cols=245 Identities=20% Similarity=0.317 Sum_probs=182.0
Q ss_pred CCeEeeCCC--CceEEeecCCCCCCccccceEEEECCEEEEEcCCCC-----CccCCceEEEEccCCceeeeccccccCC
Q 010551 4 GSWHLELPY--DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRN-----GRFLSDVQVFDLRSLAWSNLRLETELDA 76 (507)
Q Consensus 4 ~~~~~d~~~--~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~-----~~~~~~~~~~d~~~~~W~~~~~~~~~~~ 76 (507)
..|.+|+.. ..|+.+.. .+-.+|.+..+++++++||+|||... ....+++|.|||.+++|.++.+..
T Consensus 59 afy~ldL~~~~k~W~~~a~--FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s---- 132 (381)
T COG3055 59 AFYVLDLKKPGKGWTKIAD--FPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS---- 132 (381)
T ss_pred cceehhhhcCCCCceEccc--CCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc----
Confidence 356677764 59999996 56678999999999999999999543 355789999999999999998765
Q ss_pred CccccCCCcCCCCCccceeEEEECC-EEEEEeccCCCCC---------------------------------CcceEEEE
Q 010551 77 DKTEDSGLLEVLPPMSDHCMVKWGT-KLLILGGHYKKSS---------------------------------DSMIVRFI 122 (507)
Q Consensus 77 ~~~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~---------------------------------~~~~~~~y 122 (507)
|....+++++..++ .||++||.+.... ....+..|
T Consensus 133 -----------P~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy 201 (381)
T COG3055 133 -----------PTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSY 201 (381)
T ss_pred -----------ccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccccccc
Confidence 55688999999988 9999999742210 24568999
Q ss_pred ECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECC--CCcEEEeccCCCCCCCCCCc----
Q 010551 123 DLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE--TMTWDAVEVTQTPPAPRYDH---- 196 (507)
Q Consensus 123 d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~--t~~W~~~~~~~~~p~~r~~~---- 196 (507)
+|.++.|+.... .+-.++++.+++.-++++.++-|.-.+.-.+..++.++.. ..+|..+.. +|.+.+..
T Consensus 202 ~p~~n~W~~~G~--~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~---lp~~~~~~~eGv 276 (381)
T COG3055 202 DPSTNQWRNLGE--NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSD---LPAPIGSNKEGV 276 (381)
T ss_pred ccccchhhhcCc--CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccC---CCCCCCCCcccc
Confidence 999999998752 2335667755555577899999987666667778887775 557998864 33332222
Q ss_pred --eEEEEcCCEEEEEcCCC-------------------CCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCe
Q 010551 197 --SAALHANRYLIVFGGCS-------------------HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN 255 (507)
Q Consensus 197 --~~~~~~~~~l~v~GG~~-------------------~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 255 (507)
++.-..++.++|.||.. .....++||.|| .+.|+.+ +.+|.++++-+++..++.
T Consensus 277 AGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~---GeLp~~l~YG~s~~~nn~ 351 (381)
T COG3055 277 AGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIV---GELPQGLAYGVSLSYNNK 351 (381)
T ss_pred ceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeee---cccCCCccceEEEecCCc
Confidence 11223466788888864 113556899998 8999996 889999999999999999
Q ss_pred EEEEeccCCCCC-cceEEEEE
Q 010551 256 WYIVGGGDNNNG-CQETIVLN 275 (507)
Q Consensus 256 l~v~GG~~~~~~-~~~~~~~d 275 (507)
+|++||-+..+. ..+++.+.
T Consensus 352 vl~IGGE~~~Gka~~~v~~l~ 372 (381)
T COG3055 352 VLLIGGETSGGKATTRVYSLS 372 (381)
T ss_pred EEEEccccCCCeeeeeEEEEE
Confidence 999999765433 44555544
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.74 E-value=2.2e-19 Score=170.39 Aligned_cols=260 Identities=20% Similarity=0.268 Sum_probs=184.2
Q ss_pred CceEEeecCC-------CCCCccccceEEEECC--EEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCC
Q 010551 13 DLWVTLPVSG-------ARPSPRYKHAAAVFDQ--KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG 83 (507)
Q Consensus 13 ~~W~~~~~~~-------~~p~~r~~~~~~~~~~--~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~ 83 (507)
-+|..++... -.|..|.||.+|...+ .||++||+++-....++|+|+...+.|..+-.-+
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t----------- 307 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT----------- 307 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC-----------
Confidence 4788887543 4577899999998855 9999999999999999999999999999876543
Q ss_pred CcCCCCCccceeEEEECC--EEEEEeccCCCCC-----CcceEEEEECCCCcEEEeecC---CCCCCCCcCcEEEEECCE
Q 010551 84 LLEVLPPMSDHCMVKWGT--KLLILGGHYKKSS-----DSMIVRFIDLETNLCGVMETS---GKVPVTRGGHSVTLVGSR 153 (507)
Q Consensus 84 ~~~~p~~r~~~~~~~~~~--~lyv~GG~~~~~~-----~~~~~~~yd~~t~~W~~~~~~---g~~p~~r~~~~~~~~~~~ 153 (507)
..|..|.+|-+|.... +||+.|-+-+.+. ..+++|+||.+++.|.-+... ...|.....|.+++.+.+
T Consensus 308 --~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k 385 (723)
T KOG2437|consen 308 --EGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEK 385 (723)
T ss_pred --CCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCc
Confidence 3478999999998865 8999998744332 577899999999999987643 125788899999999887
Q ss_pred --EEEEcCCCC--CCCccCcEEEEECCCCcEEEeccC----C---CCCCCCCCceEEEE-cCCEEEEEcCCCCCCCCCcE
Q 010551 154 --LIIFGGEDR--SRKLLNDVHFLDLETMTWDAVEVT----Q---TPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDL 221 (507)
Q Consensus 154 --iy~~GG~~~--~~~~~n~~~~~d~~t~~W~~~~~~----~---~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i 221 (507)
||||||+.- +...+..+|.||+....|..+... + ..-..|.+|++-.. +++.+|+|||.+...-++-.
T Consensus 386 ~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~ 465 (723)
T KOG2437|consen 386 HMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLF 465 (723)
T ss_pred ceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeeh
Confidence 999999843 333567899999999999866431 0 11235677777665 45679999998766656666
Q ss_pred EEEECCCCcEEeccc---C-CCCCCCCCccEEEEE---CCeEEEEeccCC------CCCcceEEEEECCCCcEEEec
Q 010551 222 HVLDLQTNEWSQPEI---K-GDLVTGRAGHAGITI---DENWYIVGGGDN------NNGCQETIVLNMTKLAWSILT 285 (507)
Q Consensus 222 ~~~d~~~~~W~~~~~---~-~~~p~~r~~~~~~~~---~~~l~v~GG~~~------~~~~~~~~~~d~~~~~W~~v~ 285 (507)
+.|++....-..+.. . ..+.+.+....-+.. .+.+.+..|..- .+..+.+|+|++.++.|.+|.
T Consensus 466 f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~ 542 (723)
T KOG2437|consen 466 FSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIY 542 (723)
T ss_pred hcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHh
Confidence 667665433222110 0 111111222111222 346776666532 123577999999999998864
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.58 E-value=2.5e-15 Score=143.15 Aligned_cols=272 Identities=17% Similarity=0.230 Sum_probs=185.4
Q ss_pred cCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECC--EEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCC
Q 010551 61 RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT--KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV 138 (507)
Q Consensus 61 ~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~ 138 (507)
-+-.|.+++..... -++...-|..|.||-+|...+ +||++||+++... ..++|.|+...+.|+.+..-+..
T Consensus 237 y~~~W~~i~~~~~~------~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~-l~DFW~Y~v~e~~W~~iN~~t~~ 309 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTK------GDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD-LADFWAYSVKENQWTCINRDTEG 309 (723)
T ss_pred ccccccccCchhhc------ccccccCccccCcceEEEeCCCcEEEEecCcccchh-HHHHHhhcCCcceeEEeecCCCC
Confidence 34578887765411 011124577899999999965 9999999998776 78999999999999998876678
Q ss_pred CCCCcCcEEEEECC--EEEEEcCCCCC-----CCccCcEEEEECCCCcEEEeccCC---CCCCCCCCceEEEEcCC-EEE
Q 010551 139 PVTRGGHSVTLVGS--RLIIFGGEDRS-----RKLLNDVHFLDLETMTWDAVEVTQ---TPPAPRYDHSAALHANR-YLI 207 (507)
Q Consensus 139 p~~r~~~~~~~~~~--~iy~~GG~~~~-----~~~~n~~~~~d~~t~~W~~~~~~~---~~p~~r~~~~~~~~~~~-~l~ 207 (507)
|..|.-|-++..-. ++|+.|-+-+. .....|+|.||.+++.|.-++... ..|...+.|.|++..++ .+|
T Consensus 310 PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iy 389 (723)
T KOG2437|consen 310 PGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIY 389 (723)
T ss_pred CcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEE
Confidence 99999998887655 99999987332 124578999999999999886432 35888999999998653 589
Q ss_pred EEcCCCCC---CCCCcEEEEECCCCcEEecccC----C---CCCCCCCccEEEEE--CCeEEEEeccCCCCCcceEEEEE
Q 010551 208 VFGGCSHS---IFFNDLHVLDLQTNEWSQPEIK----G---DLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLN 275 (507)
Q Consensus 208 v~GG~~~~---~~~~~i~~~d~~~~~W~~~~~~----~---~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d 275 (507)
||||..-. ..+.-+|.||.....|..+... + .....|.+|.+-.. ++.+|++||......++=.+.|+
T Consensus 390 VfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~ 469 (723)
T KOG2437|consen 390 VFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYD 469 (723)
T ss_pred EecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcce
Confidence 99998532 4567799999999999876421 1 11234777776665 56899999977665555445565
Q ss_pred CCCCcEEEeccCC--CCCCCCCCCCceEEEEEcCceEEEEEccCC-------CCcCceEEEEECCCCCCCCCc
Q 010551 276 MTKLAWSILTSVK--GRNPLASEGLSVCSAIIEGEHHLVAFGGYN-------GKYNNEVFVMRLKPRDIPRPK 339 (507)
Q Consensus 276 ~~~~~W~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~-------~~~~~~~~~~~~~~~~w~~~~ 339 (507)
+....-..+.... .....|..++..-+..-+..+.|.+.-|+. ++..+.+|+|++.+++|....
T Consensus 470 I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~ 542 (723)
T KOG2437|consen 470 IDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIY 542 (723)
T ss_pred eccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHh
Confidence 5443322221110 110111112221222223345666666654 335788999999999998543
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.21 E-value=3.9e-11 Score=81.78 Aligned_cols=50 Identities=30% Similarity=0.345 Sum_probs=45.7
Q ss_pred CccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCC
Q 010551 90 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTR 142 (507)
Q Consensus 90 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 142 (507)
||.+|++++++++|||+||........+++++||+.|++|+.++ +||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 58999999999999999999886556899999999999999998 888876
No 32
>PLN02772 guanylate kinase
Probab=99.18 E-value=1.9e-10 Score=110.84 Aligned_cols=93 Identities=22% Similarity=0.289 Sum_probs=81.4
Q ss_pred CCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCC
Q 010551 135 SGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH 214 (507)
Q Consensus 135 ~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~ 214 (507)
+|..+.++..++++.+++++|+|||.+.....+|.+++||+.+.+|..+...|..|.+|.+|++++++++.|+|+++.+.
T Consensus 18 ~~~~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~ 97 (398)
T PLN02772 18 NGFGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA 97 (398)
T ss_pred cCccCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC
Confidence 34556788999999999999999998876557899999999999999999999999999999999999999999998655
Q ss_pred CCCCCcEEEEECCCC
Q 010551 215 SIFFNDLHVLDLQTN 229 (507)
Q Consensus 215 ~~~~~~i~~~d~~~~ 229 (507)
.. .++|.+.+.|-
T Consensus 98 ~~--~~~w~l~~~t~ 110 (398)
T PLN02772 98 PD--DSIWFLEVDTP 110 (398)
T ss_pred Cc--cceEEEEcCCH
Confidence 43 67999887764
No 33
>PF13964 Kelch_6: Kelch motif
Probab=99.12 E-value=1.7e-10 Score=78.62 Aligned_cols=46 Identities=37% Similarity=0.761 Sum_probs=42.6
Q ss_pred ccccceEEEECCEEEEEcCCCC-CccCCceEEEEccCCceeeecccc
Q 010551 27 PRYKHAAAVFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLET 72 (507)
Q Consensus 27 ~r~~~~~~~~~~~iyi~GG~~~-~~~~~~~~~~d~~~~~W~~~~~~~ 72 (507)
||.+|++++++++|||+||..+ ...++++++||+.+++|+.+++++
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 6999999999999999999887 788999999999999999998764
No 34
>PLN02772 guanylate kinase
Probab=99.09 E-value=6.8e-10 Score=107.11 Aligned_cols=88 Identities=22% Similarity=0.323 Sum_probs=77.1
Q ss_pred CCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEEC-CEEEEEcCCCCCCCc
Q 010551 88 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVG-SRLIIFGGEDRSRKL 166 (507)
Q Consensus 88 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~iy~~GG~~~~~~~ 166 (507)
+.++.+|+++++++++|||||.+......+.+++||+.|++|..+...|..|.+|.+|++++++ ++|++|++....+
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-- 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-- 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence 4479999999999999999998886646889999999999999999999999999999999995 5999998776543
Q ss_pred cCcEEEEECCCC
Q 010551 167 LNDVHFLDLETM 178 (507)
Q Consensus 167 ~n~~~~~d~~t~ 178 (507)
.++|.+.++|.
T Consensus 100 -~~~w~l~~~t~ 110 (398)
T PLN02772 100 -DSIWFLEVDTP 110 (398)
T ss_pred -cceEEEEcCCH
Confidence 57999888764
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.99 E-value=1.1e-09 Score=74.06 Aligned_cols=48 Identities=42% Similarity=0.758 Sum_probs=42.5
Q ss_pred CCEEEEEcCCC-CCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEE
Q 010551 151 GSRLIIFGGED-RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH 201 (507)
Q Consensus 151 ~~~iy~~GG~~-~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~ 201 (507)
+++||||||.+ .....+|++|+||+.+++|+.+ +++|.+|++|++++|
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57999999998 4566789999999999999999 468999999999874
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.95 E-value=1.5e-09 Score=72.87 Aligned_cols=44 Identities=30% Similarity=0.385 Sum_probs=40.7
Q ss_pred CccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEee
Q 010551 90 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 133 (507)
Q Consensus 90 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 133 (507)
||.+|++++++++||++||.......++++++||+.+++|+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 58999999999999999999986667999999999999999998
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.95 E-value=1.9e-09 Score=72.97 Aligned_cols=47 Identities=43% Similarity=0.730 Sum_probs=42.3
Q ss_pred CCEEEEEcCCC--CCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE
Q 010551 203 NRYLIVFGGCS--HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI 252 (507)
Q Consensus 203 ~~~l~v~GG~~--~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~ 252 (507)
+++||||||.+ ....+|++|+||+.+++|+.+ ++.|.+|++|++++|
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 46799999998 668889999999999999997 788999999999875
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.95 E-value=1.8e-09 Score=73.06 Aligned_cols=45 Identities=42% Similarity=0.764 Sum_probs=41.4
Q ss_pred ccccceEEEECCEEEEEcCC---CCCccCCceEEEEccCCceeeeccc
Q 010551 27 PRYKHAAAVFDQKLYIVGGS---RNGRFLSDVQVFDLRSLAWSNLRLE 71 (507)
Q Consensus 27 ~r~~~~~~~~~~~iyi~GG~---~~~~~~~~~~~~d~~~~~W~~~~~~ 71 (507)
||++|++++++++|||+||. .+....+++++||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 69999999999999999999 5678889999999999999998865
No 39
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.92 E-value=1.3e-09 Score=73.25 Aligned_cols=45 Identities=33% Similarity=0.620 Sum_probs=41.4
Q ss_pred ccccceEEEECCEEEEEcCCCC-CccCCceEEEEccCCceeeeccc
Q 010551 27 PRYKHAAAVFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLE 71 (507)
Q Consensus 27 ~r~~~~~~~~~~~iyi~GG~~~-~~~~~~~~~~d~~~~~W~~~~~~ 71 (507)
||.+|++++++++||++||... ...++++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 6999999999999999999877 78899999999999999999876
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.86 E-value=7.2e-09 Score=70.08 Aligned_cols=46 Identities=33% Similarity=0.579 Sum_probs=41.1
Q ss_pred CCcCcEEEEECCEEEEEcCC--CCCCCccCcEEEEECCCCcEEEeccC
Q 010551 141 TRGGHSVTLVGSRLIIFGGE--DRSRKLLNDVHFLDLETMTWDAVEVT 186 (507)
Q Consensus 141 ~r~~~~~~~~~~~iy~~GG~--~~~~~~~n~~~~~d~~t~~W~~~~~~ 186 (507)
+|.+|++++++++||+|||+ +......+++++||+.+.+|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 58899999999999999999 55566789999999999999999753
No 41
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.85 E-value=2e-07 Score=83.92 Aligned_cols=162 Identities=23% Similarity=0.385 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCCCccCcEEEEECCCCc--------EEEeccCCCCCCCCCCceEEEEc---CCEEEEEcCCCCC------
Q 010551 153 RLIIFGGEDRSRKLLNDVHFLDLETMT--------WDAVEVTQTPPAPRYDHSAALHA---NRYLIVFGGCSHS------ 215 (507)
Q Consensus 153 ~iy~~GG~~~~~~~~n~~~~~d~~t~~--------W~~~~~~~~~p~~r~~~~~~~~~---~~~l~v~GG~~~~------ 215 (507)
..++.||...++...+.+|++.+.+.. .++-...|+.|.+|++|++.++. ....++|||.+--
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 455669998888888999999876543 45556678999999999998863 3457899997511
Q ss_pred --------CCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCC--cceEEEEECCCCcEEEec
Q 010551 216 --------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNG--CQETIVLNMTKLAWSILT 285 (507)
Q Consensus 216 --------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~--~~~~~~~d~~~~~W~~v~ 285 (507)
.+...++.+|+.-+-.+... .+.+....++|.+..-++.+|++||..-... ...++.+...-- +.
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLl----lG 194 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLL----LG 194 (337)
T ss_pred hhhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeec----CC
Confidence 34456899999888777643 2455667888988888999999999754433 344554431110 00
Q ss_pred cCCCCCCCCCCCCceEEEEE--cCceEEEEEccCCC
Q 010551 286 SVKGRNPLASEGLSVCSAII--EGEHHLVAFGGYNG 319 (507)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~--~~~~~l~v~GG~~~ 319 (507)
.+.........+.+..++++ .+.+..+|+|||..
T Consensus 195 SP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~s 230 (337)
T PF03089_consen 195 SPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQS 230 (337)
T ss_pred CceeEEEECCCCceEeeeeEeecCCCceEEEecccc
Confidence 00000011122444444433 23467888899864
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.84 E-value=3.6e-09 Score=71.71 Aligned_cols=47 Identities=23% Similarity=0.360 Sum_probs=31.9
Q ss_pred CccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCC
Q 010551 90 PMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP 139 (507)
Q Consensus 90 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p 139 (507)
||.+|+++.+ +++|||+||.+......+++|+||+.+++|+++. ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 5999999999 5899999999987666899999999999999995 665
No 43
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.80 E-value=1.6e-06 Score=78.17 Aligned_cols=140 Identities=23% Similarity=0.309 Sum_probs=95.7
Q ss_pred cCCCCCccceeEEEE-C------CEEEEEeccCCCCCCcceEEEEECCCCc--------EEEeecCCCCCCCCcCcEEEE
Q 010551 85 LEVLPPMSDHCMVKW-G------TKLLILGGHYKKSSDSMIVRFIDLETNL--------CGVMETSGKVPVTRGGHSVTL 149 (507)
Q Consensus 85 ~~~p~~r~~~~~~~~-~------~~lyv~GG~~~~~~~~~~~~~yd~~t~~--------W~~~~~~g~~p~~r~~~~~~~ 149 (507)
+..+||..+.+++.+ + ..-++-||.++.....+++|+....+.. .......|+.|.+|++|++.+
T Consensus 16 SCYLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~v 95 (337)
T PF03089_consen 16 SCYLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINV 95 (337)
T ss_pred cccCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEE
Confidence 456677777777777 2 2356779998888788889998776553 333445689999999999877
Q ss_pred EC----CEEEEEcCCCC-------------CCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCC
Q 010551 150 VG----SRLIIFGGEDR-------------SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC 212 (507)
Q Consensus 150 ~~----~~iy~~GG~~~-------------~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~ 212 (507)
+- .-.++|||... --.+...++.+|+..+..+..... .+-.+.++|.+..- ++.+|++||.
T Consensus 96 V~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp-El~dG~SFHvslar-~D~VYilGGH 173 (337)
T PF03089_consen 96 VHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP-ELQDGQSFHVSLAR-NDCVYILGGH 173 (337)
T ss_pred EEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccch-hhcCCeEEEEEEec-CceEEEEccE
Confidence 62 25789999742 113456789999998887766432 34456677766665 5569999998
Q ss_pred CCC--CCCCcEEEEEC
Q 010551 213 SHS--IFFNDLHVLDL 226 (507)
Q Consensus 213 ~~~--~~~~~i~~~d~ 226 (507)
.-. .....++++..
T Consensus 174 sl~sd~Rpp~l~rlkV 189 (337)
T PF03089_consen 174 SLESDSRPPRLYRLKV 189 (337)
T ss_pred EccCCCCCCcEEEEEE
Confidence 533 33345666543
No 44
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.77 E-value=7.3e-09 Score=70.17 Aligned_cols=43 Identities=42% Similarity=0.753 Sum_probs=30.1
Q ss_pred CCCCceEEEEcCCEEEEEcCCCCC-CCCCcEEEEECCCCcEEec
Q 010551 192 PRYDHSAALHANRYLIVFGGCSHS-IFFNDLHVLDLQTNEWSQP 234 (507)
Q Consensus 192 ~r~~~~~~~~~~~~l~v~GG~~~~-~~~~~i~~~d~~~~~W~~~ 234 (507)
||.+|+++.+.++.||||||.+.. ..++++|+||+.+++|+.+
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 689999999987889999999876 6899999999999999997
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.77 E-value=1.7e-08 Score=65.59 Aligned_cols=40 Identities=45% Similarity=0.808 Sum_probs=36.0
Q ss_pred CCCccccceEEEECCEEEEEcCCC--CCccCCceEEEEccCC
Q 010551 24 RPSPRYKHAAAVFDQKLYIVGGSR--NGRFLSDVQVFDLRSL 63 (507)
Q Consensus 24 ~p~~r~~~~~~~~~~~iyi~GG~~--~~~~~~~~~~~d~~~~ 63 (507)
+|.+|.+|++++++++|||+||.. .+...+++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 488999999999999999999987 4788899999999763
No 46
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.76 E-value=1.2e-06 Score=79.95 Aligned_cols=176 Identities=15% Similarity=0.142 Sum_probs=111.8
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCC----CcEEEeccCCCCCCCCC
Q 010551 119 VRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET----MTWDAVEVTQTPPAPRY 194 (507)
Q Consensus 119 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t----~~W~~~~~~~~~p~~r~ 194 (507)
-..||+.|++++.+... -..-++-.+..-++++++.||.... ...+..|++.+ ..|.+... .+-.+|-
T Consensus 48 s~~yD~~tn~~rpl~v~---td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~--~m~~~RW 119 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ---TDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPN--DMQSGRW 119 (243)
T ss_pred EEEEecCCCcEEeccCC---CCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcc--cccCCCc
Confidence 56799999999987632 1122222233347899999998552 45688888865 67988764 3788999
Q ss_pred CceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCC------CcEEeccc-CCCCCCCCCccEEEEECCeEEEEeccCCCCC
Q 010551 195 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT------NEWSQPEI-KGDLVTGRAGHAGITIDENWYIVGGGDNNNG 267 (507)
Q Consensus 195 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~------~~W~~~~~-~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~ 267 (507)
..+++...|+.++|+||... ..+.|-+.. ..|..+.. ....+...+-+....-+++||+++..
T Consensus 120 YpT~~~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~----- 189 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR----- 189 (243)
T ss_pred cccceECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-----
Confidence 99999999999999999872 223333321 12222211 11233444555555568999999763
Q ss_pred cceEEEEECCCCcE-EEeccCCCCCCCCCCCCceEEEEEcC--------ceEEEEEcc
Q 010551 268 CQETIVLNMTKLAW-SILTSVKGRNPLASEGLSVCSAIIEG--------EHHLVAFGG 316 (507)
Q Consensus 268 ~~~~~~~d~~~~~W-~~v~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~v~GG 316 (507)
+..+||..++++ +.++.+|+.. ..+-.+.++++++- ...|+|+||
T Consensus 190 --~s~i~d~~~n~v~~~lP~lPg~~--R~YP~sgssvmLPl~~~~~~~~~~evlvCGG 243 (243)
T PF07250_consen 190 --GSIIYDYKTNTVVRTLPDLPGGP--RNYPASGSSVMLPLTDTPPNNYTAEVLVCGG 243 (243)
T ss_pred --CcEEEeCCCCeEEeeCCCCCCCc--eecCCCcceEEecCccCCCCCCCeEEEEeCC
Confidence 456899999987 7888888752 12222222232222 257888887
No 47
>PF13854 Kelch_5: Kelch motif
Probab=98.67 E-value=5.7e-08 Score=63.06 Aligned_cols=41 Identities=39% Similarity=0.685 Sum_probs=36.7
Q ss_pred CCCCCcCcEEEEECCEEEEEcCCCC-CCCccCcEEEEECCCC
Q 010551 138 VPVTRGGHSVTLVGSRLIIFGGEDR-SRKLLNDVHFLDLETM 178 (507)
Q Consensus 138 ~p~~r~~~~~~~~~~~iy~~GG~~~-~~~~~n~~~~~d~~t~ 178 (507)
+|.+|.+|++++++++||+|||... ....+|++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999984 6677999999998763
No 48
>smart00612 Kelch Kelch domain.
Probab=98.44 E-value=3.4e-07 Score=61.27 Aligned_cols=47 Identities=28% Similarity=0.445 Sum_probs=40.4
Q ss_pred EEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC
Q 010551 102 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS 152 (507)
Q Consensus 102 ~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~ 152 (507)
+||++||.... ...+++++||+.+++|+..+ +||.+|..++++.+++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 48999998753 34788999999999999987 8999999999888764
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.37 E-value=3.1e-05 Score=70.82 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=92.3
Q ss_pred ceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCC----CcE
Q 010551 54 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLET----NLC 129 (507)
Q Consensus 54 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t----~~W 129 (507)
.-..||+.+++++.+...... -+++++ ..-++.+++.||.... ...+-.|++.+ ..|
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~---------------FCSgg~-~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w 107 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDT---------------FCSGGA-FLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDW 107 (243)
T ss_pred EEEEEecCCCcEEeccCCCCC---------------cccCcC-CCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCc
Confidence 356899999999998765432 344443 3447899999998663 34577788765 678
Q ss_pred EEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCCCCccCcEEEEECCC-----CcEEEeccCC-CCCCCCCCceEEEEc
Q 010551 130 GVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLET-----MTWDAVEVTQ-TPPAPRYDHSAALHA 202 (507)
Q Consensus 130 ~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~n~~~~~d~~t-----~~W~~~~~~~-~~p~~r~~~~~~~~~ 202 (507)
..... .|-.+|...+++.+ +++++|+||.... ..+.+.... ..|.-+..+. ..+..-+-+ +.+..
T Consensus 108 ~e~~~--~m~~~RWYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~-~~llP 179 (243)
T PF07250_consen 108 TESPN--DMQSGRWYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPF-VHLLP 179 (243)
T ss_pred eECcc--cccCCCccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCce-EEEcC
Confidence 87653 48889999888877 5699999998732 122222211 1232222111 122222223 33445
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCcE
Q 010551 203 NRYLIVFGGCSHSIFFNDLHVLDLQTNEW 231 (507)
Q Consensus 203 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W 231 (507)
++.||+|+.. +-.+||..++++
T Consensus 180 dG~lFi~an~-------~s~i~d~~~n~v 201 (243)
T PF07250_consen 180 DGNLFIFANR-------GSIIYDYKTNTV 201 (243)
T ss_pred CCCEEEEEcC-------CcEEEeCCCCeE
Confidence 6779999884 567889999987
No 50
>smart00612 Kelch Kelch domain.
Probab=98.35 E-value=8.1e-07 Score=59.37 Aligned_cols=47 Identities=28% Similarity=0.462 Sum_probs=40.7
Q ss_pred EEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECC
Q 010551 205 YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE 254 (507)
Q Consensus 205 ~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~ 254 (507)
+|||+||.......+++++||+.+++|+.+ .++|.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPL---PSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccC---CCCCCccccceEEEeCC
Confidence 389999987767789999999999999986 57889999999888754
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.32 E-value=0.00021 Score=66.11 Aligned_cols=199 Identities=15% Similarity=0.157 Sum_probs=111.6
Q ss_pred CCCeEeeCCCCceEEeecCCCCCCcc---ccc-eEEEEC----C-EEEEEcCCCCCccCCceEEEEccCCceeeeccccc
Q 010551 3 SGSWHLELPYDLWVTLPVSGARPSPR---YKH-AAAVFD----Q-KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETE 73 (507)
Q Consensus 3 ~~~~~~d~~~~~W~~~~~~~~~p~~r---~~~-~~~~~~----~-~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~ 73 (507)
....+.||.+.+|..+|. ++.++ ..+ ...-.+ . +|..+...........+.+|+..++.|+.+.....
T Consensus 14 ~~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~ 90 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPP 90 (230)
T ss_pred CcEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCC
Confidence 356789999999999984 22221 111 111111 1 34444332112234578999999999999873221
Q ss_pred cCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEE-eecCCCCCCCCc----CcEEE
Q 010551 74 LDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV-METSGKVPVTRG----GHSVT 148 (507)
Q Consensus 74 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~g~~p~~r~----~~~~~ 148 (507)
.... ....+.+++.||.+........ ...+..||+.+.+|.. ++ +|..+. ...++
T Consensus 91 --------------~~~~-~~~~v~~~G~lyw~~~~~~~~~-~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~ 150 (230)
T TIGR01640 91 --------------HHPL-KSRGVCINGVLYYLAYTLKTNP-DYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLI 150 (230)
T ss_pred --------------Cccc-cCCeEEECCEEEEEEEECCCCC-cEEEEEEEcccceEeeeee----cCccccccccceEEE
Confidence 1111 1226778999999875432211 2269999999999995 53 343322 34566
Q ss_pred EECCEEEEEcCCCCCCCccCcEEEEE-CCCCcEEEeccCCCCCCCCC---CceEEEEcCCEEEEEcCCCCCCCCCcEEEE
Q 010551 149 LVGSRLIIFGGEDRSRKLLNDVHFLD-LETMTWDAVEVTQTPPAPRY---DHSAALHANRYLIVFGGCSHSIFFNDLHVL 224 (507)
Q Consensus 149 ~~~~~iy~~GG~~~~~~~~n~~~~~d-~~t~~W~~~~~~~~~p~~r~---~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~ 224 (507)
..+++|.++....... .-++|+++ -....|++.-.....+.+.. .......+++.|++..... ...-+..|
T Consensus 151 ~~~G~L~~v~~~~~~~--~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~---~~~~~~~y 225 (230)
T TIGR01640 151 NYKGKLAVLKQKKDTN--NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE---NPFYIFYY 225 (230)
T ss_pred EECCEEEEEEecCCCC--cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC---CceEEEEE
Confidence 7788887776543211 24677775 44567987654321111211 1123344556676655421 01138888
Q ss_pred ECCCC
Q 010551 225 DLQTN 229 (507)
Q Consensus 225 d~~~~ 229 (507)
|+.++
T Consensus 226 ~~~~~ 230 (230)
T TIGR01640 226 NVGEN 230 (230)
T ss_pred eccCC
Confidence 88764
No 52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.24 E-value=0.00042 Score=64.11 Aligned_cols=203 Identities=12% Similarity=0.101 Sum_probs=109.0
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcCc-EEEEEC----C-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCC
Q 010551 118 IVRFIDLETNLCGVMETSGKVPVTRGGH-SVTLVG----S-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA 191 (507)
Q Consensus 118 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~-~~~~~~----~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~ 191 (507)
.+.++||.|+.|..++....++.....+ ....++ . +++.+...... .....+.+|+..++.|+.+... ++.
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr~~~~~--~~~ 91 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWRTIECS--PPH 91 (230)
T ss_pred cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCccccccC--CCC
Confidence 5899999999999986321100001111 111121 2 56655443211 1245789999999999998742 222
Q ss_pred CCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe-cccCCCCCCCC----CccEEEEECCeEEEEeccCCCC
Q 010551 192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGR----AGHAGITIDENWYIVGGGDNNN 266 (507)
Q Consensus 192 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r----~~~~~~~~~~~l~v~GG~~~~~ 266 (507)
.......+.+ ++.+|-+...........|..||+.+.+|.. +. .|..+ ....++.++++|.++......
T Consensus 92 ~~~~~~~v~~-~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~- 165 (230)
T TIGR01640 92 HPLKSRGVCI-NGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVLKQKKDT- 165 (230)
T ss_pred ccccCCeEEE-CCEEEEEEEECCCCCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEEEecCCC-
Confidence 1222224445 5556666533221111269999999999995 42 23222 234566778888887653221
Q ss_pred CcceEEEEE-CCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCC
Q 010551 267 GCQETIVLN-MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 332 (507)
Q Consensus 267 ~~~~~~~~d-~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~ 332 (507)
..-++|+++ .....|+++-.++...............+++++..++++.... ..-+..||+.+
T Consensus 166 ~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~---~~~~~~y~~~~ 229 (230)
T TIGR01640 166 NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDEN---PFYIFYYNVGE 229 (230)
T ss_pred CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCC---ceEEEEEeccC
Confidence 235789886 4456799876555321111111122344555555555554211 11377777754
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.83 E-value=0.033 Score=56.10 Aligned_cols=240 Identities=12% Similarity=0.087 Sum_probs=127.3
Q ss_pred eEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEecc
Q 010551 32 AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGH 109 (507)
Q Consensus 32 ~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~ 109 (507)
+.++.++.||+.+.. ..++.||..+++ |+.-...... -.....+++...+.+..++.||+.+.
T Consensus 64 sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~v~v~~~- 128 (394)
T PRK11138 64 HPAVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKDG--------WFSKNKSALLSGGVTVAGGKVYIGSE- 128 (394)
T ss_pred ccEEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCccc--------ccccccccccccccEEECCEEEEEcC-
Confidence 446679999998752 368999998775 8653321100 00001122334456677888887532
Q ss_pred CCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc--EEEecc
Q 010551 110 YKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEV 185 (507)
Q Consensus 110 ~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~~ 185 (507)
...++.+|..|++ |+.... .. ...+.++.++.+|+..+ .+.++.||+.+++ |+....
T Consensus 129 ------~g~l~ald~~tG~~~W~~~~~-----~~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 129 ------KGQVYALNAEDGEVAWQTKVA-----GE-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred ------CCEEEEEECCCCCCcccccCC-----Cc-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCC
Confidence 2349999998885 875431 11 11223455778777433 2359999998876 876532
Q ss_pred CCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc--EEecccCC--CCCCCC---CccEEEEECCeEEE
Q 010551 186 TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKG--DLVTGR---AGHAGITIDENWYI 258 (507)
Q Consensus 186 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~--~~p~~r---~~~~~~~~~~~l~v 258 (507)
. +....+...+-++. ++.+|+..+ + ..++.+|+.+++ |+.....+ .....| ...+-++.++.+|+
T Consensus 190 ~-~~~~~~~~~sP~v~-~~~v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~ 261 (394)
T PRK11138 190 V-PSLTLRGESAPATA-FGGAIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA 261 (394)
T ss_pred C-CcccccCCCCCEEE-CCEEEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEE
Confidence 1 11111222222333 454555332 2 358888988764 76531110 000001 11233455788887
Q ss_pred EeccCCCCCcceEEEEECCCCc--EEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC--C
Q 010551 259 VGGGDNNNGCQETIVLNMTKLA--WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR--D 334 (507)
Q Consensus 259 ~GG~~~~~~~~~~~~~d~~~~~--W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~--~ 334 (507)
.+. + ..++.+|+.+.. |+.- .... ... .+. ++.||+... ...++.+|+.+. .
T Consensus 262 ~~~-~-----g~l~ald~~tG~~~W~~~--~~~~---------~~~-~~~-~~~vy~~~~-----~g~l~ald~~tG~~~ 317 (394)
T PRK11138 262 LAY-N-----GNLVALDLRSGQIVWKRE--YGSV---------NDF-AVD-GGRIYLVDQ-----NDRVYALDTRGGVEL 317 (394)
T ss_pred EEc-C-----CeEEEEECCCCCEEEeec--CCCc---------cCc-EEE-CCEEEEEcC-----CCeEEEEECCCCcEE
Confidence 642 1 258899988764 8752 1110 011 222 236776542 356888888654 3
Q ss_pred CCC
Q 010551 335 IPR 337 (507)
Q Consensus 335 w~~ 337 (507)
|..
T Consensus 318 W~~ 320 (394)
T PRK11138 318 WSQ 320 (394)
T ss_pred Ecc
Confidence 544
No 54
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.73 E-value=0.038 Score=51.11 Aligned_cols=212 Identities=17% Similarity=0.174 Sum_probs=120.5
Q ss_pred CCCeEeeCCCC--ceEEeecCCCCCCccccce--EEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCC
Q 010551 3 SGSWHLELPYD--LWVTLPVSGARPSPRYKHA--AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDA 76 (507)
Q Consensus 3 ~~~~~~d~~~~--~W~~~~~~~~~p~~r~~~~--~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~ 76 (507)
..+.++|+.+. .|..-.. + +..+.. .+..++.+|+..+ ...++.||+.+++ |+.-...
T Consensus 3 g~l~~~d~~tG~~~W~~~~~--~---~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~~----- 66 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLG--P---GIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDLPG----- 66 (238)
T ss_dssp SEEEEEETTTTEEEEEEECS--S---SCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEECSS-----
T ss_pred CEEEEEECCCCCEEEEEECC--C---CCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeeccc-----
Confidence 34567888665 6776331 1 122222 3346889998843 4579999998885 6554311
Q ss_pred CccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEE-eecCCCCCC-CCcCcEEEEECC
Q 010551 77 DKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGV-METSGKVPV-TRGGHSVTLVGS 152 (507)
Q Consensus 77 ~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~-~~~~g~~p~-~r~~~~~~~~~~ 152 (507)
......+..++.+|+..+ ...++.+|..++. |+. ... ..+. .......+..++
T Consensus 67 --------------~~~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~~~ 123 (238)
T PF13360_consen 67 --------------PISGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTS--SPPAGVRSSSSPAVDGD 123 (238)
T ss_dssp --------------CGGSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-S--SCTCSTB--SEEEEETT
T ss_pred --------------cccceeeecccccccccc-------eeeeEecccCCcceeeeecccc--ccccccccccCceEecC
Confidence 222224777899988863 2269999988885 884 432 1122 223334444567
Q ss_pred EEEEEcCCCCCCCccCcEEEEECCCCc--EEEeccCCCCCCC----CCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEEC
Q 010551 153 RLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAP----RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDL 226 (507)
Q Consensus 153 ~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~~~~~~p~~----r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~ 226 (507)
.+|+... ...++.+|+.+++ |......+....+ ....+..++.++.+|+..+.+ .+..+|.
T Consensus 124 ~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~ 190 (238)
T PF13360_consen 124 RLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDL 190 (238)
T ss_dssp EEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEET
T ss_pred EEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEEC
Confidence 7766554 3469999998875 7765421110000 001133344556788876643 2666799
Q ss_pred CCCc--EEecccCCCCCCCCCccE-EEEECCeEEEEeccCCCCCcceEEEEECCCCc
Q 010551 227 QTNE--WSQPEIKGDLVTGRAGHA-GITIDENWYIVGGGDNNNGCQETIVLNMTKLA 280 (507)
Q Consensus 227 ~~~~--W~~~~~~~~~p~~r~~~~-~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 280 (507)
.++. |+.. ... ..+ ....++.+|+.. . ...++.+|++++.
T Consensus 191 ~tg~~~w~~~-~~~-------~~~~~~~~~~~l~~~~-~-----~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 191 ATGEKLWSKP-ISG-------IYSLPSVDGGTLYVTS-S-----DGRLYALDLKTGK 233 (238)
T ss_dssp TTTEEEEEEC-SS--------ECECEECCCTEEEEEE-T-----TTEEEEEETTTTE
T ss_pred CCCCEEEEec-CCC-------ccCCceeeCCEEEEEe-C-----CCEEEEEECCCCC
Confidence 9987 8543 111 112 334456666664 2 2468999998874
No 55
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.64 E-value=0.09 Score=52.92 Aligned_cols=211 Identities=14% Similarity=0.108 Sum_probs=115.8
Q ss_pred CCeEeeCCCC--ceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCcc
Q 010551 4 GSWHLELPYD--LWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKT 79 (507)
Q Consensus 4 ~~~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~ 79 (507)
.++++|..+. .|+.-.. ++ ...+.++.++.||+..+ ...++.||+.+++ |+.-...+.
T Consensus 131 ~l~ald~~tG~~~W~~~~~-~~-----~~ssP~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~~~------ 192 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKVA-GE-----ALSRPVVSDGLVLVHTS------NGMLQALNESDGAVKWTVNLDVPS------ 192 (394)
T ss_pred EEEEEECCCCCCcccccCC-Cc-----eecCCEEECCEEEEECC------CCEEEEEEccCCCEeeeecCCCCc------
Confidence 4678887654 7875431 11 12233455788887544 2369999998876 765332110
Q ss_pred ccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEeec--CCCCCCCC---cCcEEEEECC
Q 010551 80 EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMET--SGKVPVTR---GGHSVTLVGS 152 (507)
Q Consensus 80 ~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~--~g~~p~~r---~~~~~~~~~~ 152 (507)
...+...+-+..++.+|+..+ ...++.+|+.+++ |+.... .+.....+ ...+-+..++
T Consensus 193 --------~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~ 257 (394)
T PRK11138 193 --------LTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG 257 (394)
T ss_pred --------ccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC
Confidence 011222233445676666433 2248888988875 865321 11100001 1123345688
Q ss_pred EEEEEcCCCCCCCccCcEEEEECCCCc--EEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010551 153 RLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 230 (507)
Q Consensus 153 ~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~ 230 (507)
.+|+.+. + ..++.+|+.+++ |+.... . . ... .+.++.+|+.... ..++.+|+.+++
T Consensus 258 ~vy~~~~-~------g~l~ald~~tG~~~W~~~~~--~---~---~~~-~~~~~~vy~~~~~------g~l~ald~~tG~ 315 (394)
T PRK11138 258 VVYALAY-N------GNLVALDLRSGQIVWKREYG--S---V---NDF-AVDGGRIYLVDQN------DRVYALDTRGGV 315 (394)
T ss_pred EEEEEEc-C------CeEEEEECCCCCEEEeecCC--C---c---cCc-EEECCEEEEEcCC------CeEEEEECCCCc
Confidence 8887553 1 359999998875 875421 1 1 112 3346668886532 369999998874
Q ss_pred --EEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCc
Q 010551 231 --WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA 280 (507)
Q Consensus 231 --W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 280 (507)
|+... ...+...+.++.++.+|+... + ..++.+|..++.
T Consensus 316 ~~W~~~~-----~~~~~~~sp~v~~g~l~v~~~-~-----G~l~~ld~~tG~ 356 (394)
T PRK11138 316 ELWSQSD-----LLHRLLTAPVLYNGYLVVGDS-E-----GYLHWINREDGR 356 (394)
T ss_pred EEEcccc-----cCCCcccCCEEECCEEEEEeC-C-----CEEEEEECCCCC
Confidence 76531 112222334556788876532 1 147888988775
No 56
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.36 E-value=0.2 Score=50.09 Aligned_cols=183 Identities=15% Similarity=0.112 Sum_probs=96.1
Q ss_pred EECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCC
Q 010551 35 VFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK 112 (507)
Q Consensus 35 ~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~ 112 (507)
+.++.+|+..+ ...++.+|+.++. |+...... ....+...+.+..++.+| +|..
T Consensus 143 v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~--------------~~~~~~~~sp~~~~~~v~-~~~~--- 198 (377)
T TIGR03300 143 VANGLVVVRTN------DGRLTALDAATGERLWTYSRVTP--------------ALTLRGSASPVIADGGVL-VGFA--- 198 (377)
T ss_pred EECCEEEEECC------CCeEEEEEcCCCceeeEEccCCC--------------ceeecCCCCCEEECCEEE-EECC---
Confidence 34566665432 2358889988764 65432211 001122234455566554 4432
Q ss_pred CCCcceEEEEECCCCc--EEEeecCCCCCCCC--------cCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc--E
Q 010551 113 SSDSMIVRFIDLETNL--CGVMETSGKVPVTR--------GGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--W 180 (507)
Q Consensus 113 ~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r--------~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W 180 (507)
...++.+|+.+++ |+... ..|.+. ...+.+..++.+|+.+. ...+++||+.+++ |
T Consensus 199 ---~g~v~ald~~tG~~~W~~~~---~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-------~g~l~a~d~~tG~~~W 265 (377)
T TIGR03300 199 ---GGKLVALDLQTGQPLWEQRV---ALPKGRTELERLVDVDGDPVVDGGQVYAVSY-------QGRVAALDLRSGRVLW 265 (377)
T ss_pred ---CCEEEEEEccCCCEeeeecc---ccCCCCCchhhhhccCCccEEECCEEEEEEc-------CCEEEEEECCCCcEEE
Confidence 1248899998874 76432 111111 11223445677777443 2359999998764 7
Q ss_pred EEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc--EEecccCCCCCCCCCccEEEEECCeEEE
Q 010551 181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYI 258 (507)
Q Consensus 181 ~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v 258 (507)
..-.. ..+...+.++++|+.... ..++.+|..++. |+.... ..+...+.++.++.+|+
T Consensus 266 ~~~~~---------~~~~p~~~~~~vyv~~~~------G~l~~~d~~tG~~~W~~~~~-----~~~~~ssp~i~g~~l~~ 325 (377)
T TIGR03300 266 KRDAS---------SYQGPAVDDNRLYVTDAD------GVVVALDRRSGSELWKNDEL-----KYRQLTAPAVVGGYLVV 325 (377)
T ss_pred eeccC---------CccCceEeCCEEEEECCC------CeEEEEECCCCcEEEccccc-----cCCccccCEEECCEEEE
Confidence 65311 111223446668875421 369999998764 765211 11222233445677766
Q ss_pred EeccCCCCCcceEEEEECCCCc
Q 010551 259 VGGGDNNNGCQETIVLNMTKLA 280 (507)
Q Consensus 259 ~GG~~~~~~~~~~~~~d~~~~~ 280 (507)
.. .+ ..++.+|..+.+
T Consensus 326 ~~-~~-----G~l~~~d~~tG~ 341 (377)
T TIGR03300 326 GD-FE-----GYLHWLSREDGS 341 (377)
T ss_pred Ee-CC-----CEEEEEECCCCC
Confidence 42 22 258888987664
No 57
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.27 E-value=0.21 Score=51.85 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=69.2
Q ss_pred ccceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCCccceeEEEEC-CEEEE
Q 010551 29 YKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLI 105 (507)
Q Consensus 29 ~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~lyv 105 (507)
...+.++.++.||+.... ..++.+|..+++ |+.-...... ...+ +.....++..+ +.||+
T Consensus 53 ~~~sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~----------~~~~-~~~~~g~~~~~~~~V~v 115 (488)
T cd00216 53 QEGTPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPAD----------RGCC-DVVNRGVAYWDPRKVFF 115 (488)
T ss_pred cccCCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCcc----------cccc-ccccCCcEEccCCeEEE
Confidence 334456679999987642 469999998775 8764322100 0000 11122334446 77776
Q ss_pred EeccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCC---CccCcEEEEECCCCc-
Q 010551 106 LGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSR---KLLNDVHFLDLETMT- 179 (507)
Q Consensus 106 ~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~---~~~n~~~~~d~~t~~- 179 (507)
... ...++.+|..|++ |+.-......+......+.++.++.+| +|..+... .....++.||..+++
T Consensus 116 ~~~-------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 116 GTF-------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVI-IGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred ecC-------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEE-EeccccccccCCCCcEEEEEECCCCce
Confidence 432 2358999998885 775431100000001223344455555 44332211 224579999998775
Q ss_pred -EEEec
Q 010551 180 -WDAVE 184 (507)
Q Consensus 180 -W~~~~ 184 (507)
|..-.
T Consensus 188 ~W~~~~ 193 (488)
T cd00216 188 LWRFYT 193 (488)
T ss_pred eeEeec
Confidence 87543
No 58
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.01 E-value=0.0048 Score=65.51 Aligned_cols=102 Identities=19% Similarity=0.299 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 470 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e 470 (507)
...|..+.+.++..++..+...++|+.++..+...-.....+|++.+.++++++.++..|.+. .++..+.++.+||+
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~a---Rq~DKq~l~~LEkr 496 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQA---RQQDKQSLQQLEKR 496 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 455666666777777777778888888877777665666777888888887777776665533 33444555677777
Q ss_pred HHHHHHhHHHHHHHHHHhhcccccC
Q 010551 471 VQILRQQKSAFEQEMERATSVQTQG 495 (507)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~q~ 495 (507)
+.+.+++++.+|+||.+++...++.
T Consensus 497 L~eE~~~R~~lEkQL~eErk~r~~e 521 (697)
T PF09726_consen 497 LAEERRQRASLEKQLQEERKARKEE 521 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 7777777777777776665444433
No 59
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.97 E-value=0.24 Score=48.56 Aligned_cols=131 Identities=17% Similarity=0.131 Sum_probs=80.0
Q ss_pred eEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccC
Q 010551 32 AAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHY 110 (507)
Q Consensus 32 ~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~ 110 (507)
.++.+ +++|++++.. ....+||+.+..-...|.+.. +.....++.++++||++....
T Consensus 70 ~F~al~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~----------------pk~~pisv~VG~~LY~m~~~~ 127 (342)
T PF07893_consen 70 DFFALHGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHS----------------PKRCPISVSVGDKLYAMDRSP 127 (342)
T ss_pred EEEEecCCeEEEEcCC------CCeEEEECCCCeEeccCCCCC----------------CCcceEEEEeCCeEEEeeccC
Confidence 34444 8999999763 348999999987776655432 344457778899999998875
Q ss_pred CCCCCc----ceEEEE--E--------CCCCcEEEeecCCCCCCCCcC-------cEEEEE-CCEEEE-EcCCCCCCCcc
Q 010551 111 KKSSDS----MIVRFI--D--------LETNLCGVMETSGKVPVTRGG-------HSVTLV-GSRLII-FGGEDRSRKLL 167 (507)
Q Consensus 111 ~~~~~~----~~~~~y--d--------~~t~~W~~~~~~g~~p~~r~~-------~~~~~~-~~~iy~-~GG~~~~~~~~ 167 (507)
...... ..++.+ + ..+-.|..++ ++|..... .+.+++ +..|+| .-|..
T Consensus 128 ~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------ 198 (342)
T PF07893_consen 128 FPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------ 198 (342)
T ss_pred ccccccCccceeEEEeccccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc------
Confidence 443211 145555 3 1222577765 33433222 234445 558887 44432
Q ss_pred CcEEEEECCCCcEEEeccCCCCCCCCCCc
Q 010551 168 NDVHFLDLETMTWDAVEVTQTPPAPRYDH 196 (507)
Q Consensus 168 n~~~~~d~~t~~W~~~~~~~~~p~~r~~~ 196 (507)
...|.||+.+.+|+.+. +...|-.+.
T Consensus 199 ~GTysfDt~~~~W~~~G---dW~LPF~G~ 224 (342)
T PF07893_consen 199 WGTYSFDTESHEWRKHG---DWMLPFHGQ 224 (342)
T ss_pred eEEEEEEcCCcceeecc---ceecCcCCc
Confidence 23899999999999983 444444443
No 60
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.94 E-value=0.32 Score=44.83 Aligned_cols=211 Identities=18% Similarity=0.219 Sum_probs=114.4
Q ss_pred ceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCCcccee--EEEECCEEEEEeccCCCCCCcceEEEEECCCCc-
Q 010551 54 DVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHC--MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL- 128 (507)
Q Consensus 54 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~--~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~- 128 (507)
.+..+|+.++. |+.-... +..+.. .+..++.+|+..+ ...++.||..+++
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~------------------~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~ 58 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGP------------------GIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKV 58 (238)
T ss_dssp EEEEEETTTTEEEEEEECSS------------------SCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEE
T ss_pred EEEEEECCCCCEEEEEECCC------------------CCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCE
Confidence 57888987774 7663210 122222 3447889998842 4459999999986
Q ss_pred -EEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc--EEE-eccCCCCCCCCCCceEEEEcCC
Q 010551 129 -CGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDA-VEVTQTPPAPRYDHSAALHANR 204 (507)
Q Consensus 129 -W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~-~~~~~~~p~~r~~~~~~~~~~~ 204 (507)
|+.-. +.+ .....+..++.+|+..+ .+.++.||+.+++ |+. .... .+..........+.++
T Consensus 59 ~W~~~~-----~~~-~~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~~~~~~~~~ 123 (238)
T PF13360_consen 59 LWRFDL-----PGP-ISGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSS--PPAGVRSSSSPAVDGD 123 (238)
T ss_dssp EEEEEC-----SSC-GGSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SS--CTCSTB--SEEEEETT
T ss_pred EEEeec-----ccc-ccceeeecccccccccc-------eeeeEecccCCcceeeeeccccc--cccccccccCceEecC
Confidence 66543 111 12224677888887763 2369999987765 984 4331 1222222233334466
Q ss_pred EEEEEcCCCCCCCCCcEEEEECCCCc--EEecccCCCCCCC-----CCccEEEEECCeEEEEeccCCCCCcceEEEEECC
Q 010551 205 YLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTG-----RAGHAGITIDENWYIVGGGDNNNGCQETIVLNMT 277 (507)
Q Consensus 205 ~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~-----r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~ 277 (507)
.+|+... ...++.+|+.+++ |......+....+ ......++.++.+|+..+.. .+..+|..
T Consensus 124 ~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~ 191 (238)
T PF13360_consen 124 RLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLA 191 (238)
T ss_dssp EEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETT
T ss_pred EEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECC
Confidence 5665443 2479999999876 6664211111010 01122233356777765422 15666998
Q ss_pred CCc--EEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551 278 KLA--WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 333 (507)
Q Consensus 278 ~~~--W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 333 (507)
+.. |+. + +.. ........+..||+.. . ...++.+|+.+.
T Consensus 192 tg~~~w~~-~-~~~----------~~~~~~~~~~~l~~~~-~----~~~l~~~d~~tG 232 (238)
T PF13360_consen 192 TGEKLWSK-P-ISG----------IYSLPSVDGGTLYVTS-S----DGRLYALDLKTG 232 (238)
T ss_dssp TTEEEEEE-C-SS-----------ECECEECCCTEEEEEE-T----TTEEEEEETTTT
T ss_pred CCCEEEEe-c-CCC----------ccCCceeeCCEEEEEe-C----CCEEEEEECCCC
Confidence 886 844 2 221 1111223334666654 2 467888988765
No 61
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.86 E-value=0.45 Score=46.69 Aligned_cols=129 Identities=19% Similarity=0.244 Sum_probs=80.0
Q ss_pred ECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCcc----CcEEEE-
Q 010551 99 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLL----NDVHFL- 173 (507)
Q Consensus 99 ~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~----n~~~~~- 173 (507)
.+++|+..+.. ..+.+||+.|..-...+ .++.+...-.++.++++||++.......... ..++.+
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence 48999998664 23889999999876554 4555555567788899999998764332110 144444
Q ss_pred -E--------CCCCcEEEeccCCCCCCCCCC-------ceEEEEcCCEEEE-EcCCCCCCCCCcEEEEECCCCcEEeccc
Q 010551 174 -D--------LETMTWDAVEVTQTPPAPRYD-------HSAALHANRYLIV-FGGCSHSIFFNDLHVLDLQTNEWSQPEI 236 (507)
Q Consensus 174 -d--------~~t~~W~~~~~~~~~p~~r~~-------~~~~~~~~~~l~v-~GG~~~~~~~~~i~~~d~~~~~W~~~~~ 236 (507)
+ .....|..+++ +|..... .+-+++++..|+| .-|.. .-.|.||..+.+|+..
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~-- 214 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKH-- 214 (342)
T ss_pred cccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeec--
Confidence 3 22346888754 2322222 2223345666777 33321 2389999999999997
Q ss_pred CCCCCCCCCccE
Q 010551 237 KGDLVTGRAGHA 248 (507)
Q Consensus 237 ~~~~p~~r~~~~ 248 (507)
|++..|-.+.+
T Consensus 215 -GdW~LPF~G~a 225 (342)
T PF07893_consen 215 -GDWMLPFHGQA 225 (342)
T ss_pred -cceecCcCCcc
Confidence 77766655444
No 62
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.79 E-value=0.055 Score=51.07 Aligned_cols=123 Identities=13% Similarity=0.129 Sum_probs=74.9
Q ss_pred EEEeccCCCCC-CcceEEEEECCCCcEEEeecCCCCCCCCcC--cEEEEE-CCEEEEEcCCCCCCCccCcEEEEECCCCc
Q 010551 104 LILGGHYKKSS-DSMIVRFIDLETNLCGVMETSGKVPVTRGG--HSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMT 179 (507)
Q Consensus 104 yv~GG~~~~~~-~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~--~~~~~~-~~~iy~~GG~~~~~~~~n~~~~~d~~t~~ 179 (507)
||-|-...... ....+..||+.+.+|..+.. . ..+ .++... ++++|+.|-..........+-.||..+.+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~---~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN---G---ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCC---C---ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 44443443332 46789999999999998863 2 222 233334 55777776554333234568999999999
Q ss_pred EEEeccC--CCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEeccc
Q 010551 180 WDAVEVT--QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 236 (507)
Q Consensus 180 W~~~~~~--~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~ 236 (507)
|..+... ..+|.+....+....+...+++.|.... -..-+..| +..+|..+..
T Consensus 76 w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~--g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 76 WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSAN--GSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred eeecCCcccccCCCcEEEEEeeccCCceEEEeceecC--CCceEEEE--cCCceEeccc
Confidence 9988762 2455554333333344556777776522 22345566 5678998743
No 63
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.75 E-value=0.71 Score=46.08 Aligned_cols=194 Identities=18% Similarity=0.130 Sum_probs=103.0
Q ss_pred ceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEec
Q 010551 31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG 108 (507)
Q Consensus 31 ~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG 108 (507)
.+.++.++.||+.+.. ..++.||+.+++ |+.-... ....+.++.++.+|+.+.
T Consensus 59 ~~p~v~~~~v~v~~~~------g~v~a~d~~tG~~~W~~~~~~-------------------~~~~~p~v~~~~v~v~~~ 113 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD------GTVVALDAETGKRLWRVDLDE-------------------RLSGGVGADGGLVFVGTE 113 (377)
T ss_pred cceEEECCEEEEECCC------CeEEEEEccCCcEeeeecCCC-------------------CcccceEEcCCEEEEEcC
Confidence 4556668888887642 369999998775 7543221 112233444677776432
Q ss_pred cCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc--EEEec
Q 010551 109 HYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE 184 (507)
Q Consensus 109 ~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~ 184 (507)
...++.||+.+++ |+.... .. ...+.+..++.+|+..+ ...++.+|+.+++ |+...
T Consensus 114 -------~g~l~ald~~tG~~~W~~~~~-----~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 114 -------KGEVIALDAEDGKELWRAKLS-----SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSR 173 (377)
T ss_pred -------CCEEEEEECCCCcEeeeeccC-----ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEcc
Confidence 2359999998875 875421 11 11223345677776433 2359999998764 87543
Q ss_pred cCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc--EEecccCC--CCCCCC---CccEEEEECCeEE
Q 010551 185 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKG--DLVTGR---AGHAGITIDENWY 257 (507)
Q Consensus 185 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~--~~p~~r---~~~~~~~~~~~l~ 257 (507)
.. +....+...+.+.. ++.+ ++|..+ ..++.+|+.+++ |+.....+ .....+ ...+.++.++.+|
T Consensus 174 ~~-~~~~~~~~~sp~~~-~~~v-~~~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy 245 (377)
T TIGR03300 174 VT-PALTLRGSASPVIA-DGGV-LVGFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY 245 (377)
T ss_pred CC-CceeecCCCCCEEE-CCEE-EEECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence 21 11111222333334 4534 444432 268899988764 76421100 000001 1122334566777
Q ss_pred EEeccCCCCCcceEEEEECCCCc--EEE
Q 010551 258 IVGGGDNNNGCQETIVLNMTKLA--WSI 283 (507)
Q Consensus 258 v~GG~~~~~~~~~~~~~d~~~~~--W~~ 283 (507)
+... + ..++.||+.+.. |..
T Consensus 246 ~~~~-~-----g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 246 AVSY-Q-----GRVAALDLRSGRVLWKR 267 (377)
T ss_pred EEEc-C-----CEEEEEECCCCcEEEee
Confidence 6532 1 258889987763 754
No 64
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.74 E-value=0.55 Score=44.64 Aligned_cols=186 Identities=21% Similarity=0.164 Sum_probs=89.6
Q ss_pred EEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCc
Q 010551 39 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDS 116 (507)
Q Consensus 39 ~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~ 116 (507)
.+|+.++.+ +.+.+||+.++.-...-... ..++ +++.. +..+|+.++. .
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~---------------~~~~---~l~~~~dg~~l~~~~~~------~ 52 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVG---------------QRPR---GITLSKDGKLLYVCASD------S 52 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECC---------------CCCC---ceEECCCCCEEEEEECC------C
Confidence 467776643 36889999877543322111 0111 22222 3456777653 2
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-C-CEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCC
Q 010551 117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 194 (507)
Q Consensus 117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~ 194 (507)
..+..||+.+++.....+.+ +.+ ..++.. + +.+|+.++.+ +.+..||+.+..-...- +....
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~~~~-----~~~~~ 116 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSG--PDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKVLAEI-----PVGVE 116 (300)
T ss_pred CeEEEEECCCCcEEEeccCC--CCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeEEeEe-----eCCCC
Confidence 35889999988765432111 111 122222 3 3566554422 36899999875422111 11111
Q ss_pred CceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEE
Q 010551 195 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 274 (507)
Q Consensus 195 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 274 (507)
.++++...++.+++++..+. +.++.||..+..-......+..| .+....-+++.+++++... ..+.+|
T Consensus 117 ~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~~~~----~~~~~s~dg~~l~~~~~~~----~~v~i~ 184 (300)
T TIGR03866 117 PEGMAVSPDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVDQRP----RFAEFTADGKELWVSSEIG----GTVSVI 184 (300)
T ss_pred cceEEECCCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcCCCc----cEEEECCCCCEEEEEcCCC----CEEEEE
Confidence 23344444555666655322 24667787765443211111111 1122222445554543222 257889
Q ss_pred ECCCCcE
Q 010551 275 NMTKLAW 281 (507)
Q Consensus 275 d~~~~~W 281 (507)
|+.+...
T Consensus 185 d~~~~~~ 191 (300)
T TIGR03866 185 DVATRKV 191 (300)
T ss_pred EcCccee
Confidence 9887643
No 65
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.52 E-value=1.1 Score=45.35 Aligned_cols=148 Identities=12% Similarity=0.041 Sum_probs=78.4
Q ss_pred CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEe
Q 010551 53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 132 (507)
Q Consensus 53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 132 (507)
..++++|+.++.-..+..... .....+...-++.|++...... ...+|.+|+.++....+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~----------------~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l 273 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPG----------------MNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRL 273 (417)
T ss_pred cEEEEEECCCCCEEEeecCCC----------------CccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEEC
Confidence 579999998876655443211 1111111111345665543222 34599999999887766
Q ss_pred ecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcC
Q 010551 133 ETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG 211 (507)
Q Consensus 133 ~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG 211 (507)
... +...... ....++ +|++...... ...+|.+|+.+..+..+...+ ..........++..+++..
T Consensus 274 ~~~---~~~~~~~-~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 274 TNG---PGIDTEP-SWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred CCC---CCCCCCE-EECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEE
Confidence 421 1111111 111244 5554433222 247999999998888775422 1222333333444555544
Q ss_pred CCCCCCCCcEEEEECCCCcEEecc
Q 010551 212 CSHSIFFNDLHVLDLQTNEWSQPE 235 (507)
Q Consensus 212 ~~~~~~~~~i~~~d~~~~~W~~~~ 235 (507)
... ....++.+|+.++.+..+.
T Consensus 341 ~~~--~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 341 REG--GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred ccC--CceEEEEEeCCCCCeEEcc
Confidence 332 2347999999887776653
No 66
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.48 E-value=0.72 Score=42.90 Aligned_cols=200 Identities=17% Similarity=0.128 Sum_probs=105.9
Q ss_pred CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551 37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS 114 (507)
Q Consensus 37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~ 114 (507)
++.||+..- ....++.+|+.++.-..+... . -.+++.. ++.+|+....
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~~------------------~--~~G~~~~~~~g~l~v~~~~----- 60 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDLP------------------G--PNGMAFDRPDGRLYVADSG----- 60 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEESS------------------S--EEEEEEECTTSEEEEEETT-----
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEecC------------------C--CceEEEEccCCEEEEEEcC-----
Confidence 577777743 235799999998876654432 1 2334444 6778877542
Q ss_pred CcceEEEEECCCCcEEEeecC--CCCCCCCcCcEEEEECCEEEEEcCCCCCCCcc--CcEEEEECCCCcEEEeccCCCCC
Q 010551 115 DSMIVRFIDLETNLCGVMETS--GKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLL--NDVHFLDLETMTWDAVEVTQTPP 190 (507)
Q Consensus 115 ~~~~~~~yd~~t~~W~~~~~~--g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~--n~~~~~d~~t~~W~~~~~~~~~p 190 (507)
.+.++|+.+++++.+... +..+..+.+-.++.-++.||+---........ ..++++++. .+...+... +
T Consensus 61 ---~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~- 133 (246)
T PF08450_consen 61 ---GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--L- 133 (246)
T ss_dssp ---CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--E-
T ss_pred ---ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--c-
Confidence 256779999999887642 11133333333344466777642221111112 579999998 666555421 1
Q ss_pred CCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCC--CcEEecccCCCCCCCC-CccEEEEE-CCeEEEEeccCCC
Q 010551 191 APRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQT--NEWSQPEIKGDLVTGR-AGHAGITI-DENWYIVGGGDNN 265 (507)
Q Consensus 191 ~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~--~~W~~~~~~~~~p~~r-~~~~~~~~-~~~l~v~GG~~~~ 265 (507)
..-.+++... ++.||+.- ...+.|++|++.. ..+.........+... ..-.+++- +++|||..-
T Consensus 134 --~~pNGi~~s~dg~~lyv~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~---- 202 (246)
T PF08450_consen 134 --GFPNGIAFSPDGKTLYVAD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW---- 202 (246)
T ss_dssp --SSEEEEEEETTSSEEEEEE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE----
T ss_pred --ccccceEECCcchheeecc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc----
Confidence 1112344443 44577632 2335699999864 3344322111112211 12234443 568888732
Q ss_pred CCcceEEEEECCCCcEEEec
Q 010551 266 NGCQETIVLNMTKLAWSILT 285 (507)
Q Consensus 266 ~~~~~~~~~d~~~~~W~~v~ 285 (507)
....+++||+....-..+.
T Consensus 203 -~~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 203 -GGGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp -TTTEEEEEETTSCEEEEEE
T ss_pred -CCCEEEEECCCccEEEEEc
Confidence 1236899999955555553
No 67
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.48 E-value=0.14 Score=52.09 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=6.7
Q ss_pred hhhhhhhHHHHHHHHHH
Q 010551 444 RSRCFKLEAQIAELQKM 460 (507)
Q Consensus 444 ~~~~~~~e~~~~e~~~~ 460 (507)
+.++.+|+..+..+.++
T Consensus 219 ~~ri~~LEedi~~l~qk 235 (546)
T PF07888_consen 219 RQRIRELEEDIKTLTQK 235 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444333333
No 68
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.46 E-value=0.037 Score=46.48 Aligned_cols=74 Identities=11% Similarity=0.213 Sum_probs=28.2
Q ss_pred hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 010551 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQE 484 (507)
Q Consensus 411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~~~~~~ 484 (507)
+...+.+.....+.++..+.+.++.+..++++.++++.+.+..+.+..+.....+.+.+.++.+.++++..+..
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~ 95 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKK 95 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333334444444444444433333
No 69
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.46 E-value=1.2 Score=45.10 Aligned_cols=196 Identities=10% Similarity=0.030 Sum_probs=106.6
Q ss_pred CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551 53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 131 (507)
.++|++|+.++.=+.+.... .........- +.+|++.-...+ ..++|.+|+.++.+++
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~-----------------g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~ 271 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ-----------------GMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQ 271 (419)
T ss_pred CEEEEEECCCCcEEEEecCC-----------------CcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEE
Confidence 38999999888766665321 1111112222 345655443222 4579999999999988
Q ss_pred eecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcC
Q 010551 132 METSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG 211 (507)
Q Consensus 132 ~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG 211 (507)
+.. .+..-.......-+.+|++.....+ ...++++|+.++..+.+...+. .. ....-+++.|++...
T Consensus 272 LT~---~~~~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-----~~-~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 272 ITN---YPGIDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-----NN-SSVSTYKNYIVYSSR 338 (419)
T ss_pred ccc---CCCccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-----cC-ceECCCCCEEEEEEc
Confidence 752 2221111111112346766654322 3579999999999887764322 12 223334554544443
Q ss_pred CCCCC---CCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCC
Q 010551 212 CSHSI---FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK 288 (507)
Q Consensus 212 ~~~~~---~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~ 288 (507)
..... ...+++++|+.++.++.+...+ ...+....-+++.+++-... .....++++++..+.=..++..+
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~--~~~~~L~~~~l~g~~~~~l~~~~ 411 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL--GNQSALGIIRLNYNKSFLFPLKV 411 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc--CCcEEEEEEecCCCeeEEeecCC
Confidence 32211 2358999999999998875421 11112222345544443222 33456888888776555555433
Q ss_pred C
Q 010551 289 G 289 (507)
Q Consensus 289 ~ 289 (507)
+
T Consensus 412 g 412 (419)
T PRK04043 412 G 412 (419)
T ss_pred C
Confidence 3
No 70
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.39 E-value=0.094 Score=49.52 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=68.2
Q ss_pred ccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCC-CCCcEEEEECCCCcEEecccC--CCCCC
Q 010551 166 LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIK--GDLVT 242 (507)
Q Consensus 166 ~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~--~~~p~ 242 (507)
.++.+-.||+.+.+|..+... . .-.-..+...+++.+|+.|-..... ....+-.||.++.+|..+... ...|.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~---i-~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG---I-SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC---c-eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC
Confidence 477899999999999988642 1 1112233334577788877654433 455688999999999887541 23454
Q ss_pred CCCccEEEEEC-CeEEEEeccCCCCCcceEEEEECCCCcEEEecc
Q 010551 243 GRAGHAGITID-ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 286 (507)
Q Consensus 243 ~r~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~ 286 (507)
|.........+ +.+++.|.. .....-+..| +..+|..+..
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRS--ANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cEEEEEeeccCCceEEEecee--cCCCceEEEE--cCCceEeccc
Confidence 43222222222 357776664 2223334455 5678988765
No 71
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.31 E-value=0.15 Score=49.91 Aligned_cols=156 Identities=17% Similarity=0.153 Sum_probs=89.2
Q ss_pred CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCc
Q 010551 37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 116 (507)
Q Consensus 37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 116 (507)
.--|.+.+|.++. -.+|..|-.++. .+....-. -.|.........|....+++|+..
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l~-------------~fPi~~a~f~p~G~~~i~~s~rrk----- 280 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLE-------------KFPIQKAEFAPNGHSVIFTSGRRK----- 280 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccCh--hheeeeec-------------cCccceeeecCCCceEEEecccce-----
Confidence 4568888886643 234555555554 22222100 112222222333444777777543
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCc
Q 010551 117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 196 (507)
Q Consensus 117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~ 196 (507)
-+|.||+.+.+-.++.+...++....-...+...+.++++-|..+ -|+.+...|+.|..-- .++.....+
T Consensus 281 -y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~s~---KieG~v~~~ 350 (514)
T KOG2055|consen 281 -YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELITSF---KIEGVVSDF 350 (514)
T ss_pred -EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhhee---eeccEEeeE
Confidence 399999999999988754444433333333444556667777543 3788888888875332 123233344
Q ss_pred eEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEE
Q 010551 197 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS 232 (507)
Q Consensus 197 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~ 232 (507)
+.. -+...|++.||.+ .+|++|+..+...
T Consensus 351 ~fs-Sdsk~l~~~~~~G------eV~v~nl~~~~~~ 379 (514)
T KOG2055|consen 351 TFS-SDSKELLASGGTG------EVYVWNLRQNSCL 379 (514)
T ss_pred EEe-cCCcEEEEEcCCc------eEEEEecCCcceE
Confidence 444 3346788888864 7999999987533
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.29 E-value=1.1 Score=44.26 Aligned_cols=215 Identities=24% Similarity=0.321 Sum_probs=106.0
Q ss_pred CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCc
Q 010551 37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 116 (507)
Q Consensus 37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 116 (507)
+|+|++.|+. ...|-+||..+..- +-.... ...| ...--....++.+++.|+.+.
T Consensus 79 DG~LlaaGD~-----sG~V~vfD~k~r~i--LR~~~a-----------h~ap--v~~~~f~~~d~t~l~s~sDd~----- 133 (487)
T KOG0310|consen 79 DGRLLAAGDE-----SGHVKVFDMKSRVI--LRQLYA-----------HQAP--VHVTKFSPQDNTMLVSGSDDK----- 133 (487)
T ss_pred CCeEEEccCC-----cCcEEEeccccHHH--HHHHhh-----------ccCc--eeEEEecccCCeEEEecCCCc-----
Confidence 6788888874 34588999554211 111110 0111 111122345888999887543
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCC-cEEEeccCCCCCCCCCC
Q 010551 117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVEVTQTPPAPRYD 195 (507)
Q Consensus 117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~-~W~~~~~~~~~p~~r~~ 195 (507)
.+-.+|.++..- .....|.-.--|++ ++...+++|++-||+|+. +-.||+.+. .|..--.. ..|..
T Consensus 134 -v~k~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg~------vrl~DtR~~~~~v~elnh-g~pVe--- 200 (487)
T KOG0310|consen 134 -VVKYWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYDGK------VRLWDTRSLTSRVVELNH-GCPVE--- 200 (487)
T ss_pred -eEEEEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCCce------EEEEEeccCCceeEEecC-CCcee---
Confidence 245556666652 33333322222222 233457799999999863 677787666 44322111 12211
Q ss_pred ceEEEEcC-CEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCcc-----EEEEE-CCeEEEEeccCCCCCc
Q 010551 196 HSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH-----AGITI-DENWYIVGGGDNNNGC 268 (507)
Q Consensus 196 ~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~-----~~~~~-~~~l~v~GG~~~~~~~ 268 (507)
.++...+ ..|...|| |.+-++|+.++ +..+..+..| ++... +++-++.||.++.
T Consensus 201 -~vl~lpsgs~iasAgG-------n~vkVWDl~~G--------~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~--- 261 (487)
T KOG0310|consen 201 -SVLALPSGSLIASAGG-------NSVKVWDLTTG--------GQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH--- 261 (487)
T ss_pred -eEEEcCCCCEEEEcCC-------CeEEEEEecCC--------ceehhhhhcccceEEEEEeecCCceEeecccccc---
Confidence 2333344 44455555 46667776543 2333333333 22222 3466666665543
Q ss_pred ceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCC
Q 010551 269 QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 319 (507)
Q Consensus 269 ~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~ 319 (507)
+-+||+ ..|+.+..+.-+ +..+...+.+++ .-+++|+.+|
T Consensus 262 --VKVfd~--t~~Kvv~s~~~~------~pvLsiavs~dd-~t~viGmsnG 301 (487)
T KOG0310|consen 262 --VKVFDT--TNYKVVHSWKYP------GPVLSIAVSPDD-QTVVIGMSNG 301 (487)
T ss_pred --eEEEEc--cceEEEEeeecc------cceeeEEecCCC-ceEEEecccc
Confidence 567883 445555444322 222333344443 4556677654
No 73
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.12 E-value=0.04 Score=58.71 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=7.5
Q ss_pred EEEEccCCceeeecc
Q 010551 56 QVFDLRSLAWSNLRL 70 (507)
Q Consensus 56 ~~~d~~~~~W~~~~~ 70 (507)
++|--.+-+|+.++.
T Consensus 130 ~~~~e~~~~~~~~~~ 144 (697)
T PF09726_consen 130 FVYVEASVRLKDLKS 144 (697)
T ss_pred HHHHHHHHhhcccCC
Confidence 444445555555544
No 74
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.07 E-value=2.3 Score=44.50 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=70.9
Q ss_pred ceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCC--CCCccceeEEEECCEEEEE
Q 010551 31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEV--LPPMSDHCMVKWGTKLLIL 106 (507)
Q Consensus 31 ~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~--p~~r~~~~~~~~~~~lyv~ 106 (507)
.+-++.++.||+... ...++.+|..+++ |+.-...... ..+ .......+.+..+++||+.
T Consensus 63 stPvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~----------~~~~~~~~~~~rg~av~~~~v~v~ 126 (527)
T TIGR03075 63 SQPLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDD----------VIPVMCCDVVNRGVALYDGKVFFG 126 (527)
T ss_pred cCCEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcc----------cccccccccccccceEECCEEEEE
Confidence 445667899998654 2369999998874 8754422110 000 0011223345667888874
Q ss_pred eccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCC-CcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc--EE
Q 010551 107 GGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVT-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WD 181 (507)
Q Consensus 107 GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~ 181 (507)
.. ...++.+|..|++ |+.-. +..... ....+-++.++.||+-.... .......++.||..+++ |+
T Consensus 127 t~-------dg~l~ALDa~TGk~~W~~~~--~~~~~~~~~tssP~v~~g~Vivg~~~~-~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 127 TL-------DARLVALDAKTGKVVWSKKN--GDYKAGYTITAAPLVVKGKVITGISGG-EFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred cC-------CCEEEEEECCCCCEEeeccc--ccccccccccCCcEEECCEEEEeeccc-ccCCCcEEEEEECCCCceeEe
Confidence 32 2349999999986 76532 122111 11223345677776643211 11124569999998875 76
Q ss_pred Eec
Q 010551 182 AVE 184 (507)
Q Consensus 182 ~~~ 184 (507)
.-.
T Consensus 197 ~~~ 199 (527)
T TIGR03075 197 RYT 199 (527)
T ss_pred ccC
Confidence 554
No 75
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.07 E-value=0.65 Score=43.23 Aligned_cols=189 Identities=14% Similarity=0.067 Sum_probs=99.1
Q ss_pred CCeEeeCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcccc
Q 010551 4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED 81 (507)
Q Consensus 4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~ 81 (507)
.+|.+|+....-..+... . ..+++.. ++.+|+... ..+.++|+.++.++.+.....
T Consensus 23 ~i~~~~~~~~~~~~~~~~----~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~-------- 80 (246)
T PF08450_consen 23 RIYRVDPDTGEVEVIDLP----G---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTVLADLPD-------- 80 (246)
T ss_dssp EEEEEETTTTEEEEEESS----S---EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEEEEEEET--------
T ss_pred EEEEEECCCCeEEEEecC----C---CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEEEeeccC--------
Confidence 356777777766655532 2 3333333 678888764 346777999999988776421
Q ss_pred CCCcCCCCCccceeEEEECCEEEEEeccCCCCCCc--ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CC-EEEEE
Q 010551 82 SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS--MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GS-RLIIF 157 (507)
Q Consensus 82 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~--~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~iy~~ 157 (507)
...+..+..-.++.-++.||+---........ ..++++++. ++.+.+... + ...+ .++.- ++ .||+.
T Consensus 81 ---~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~--~~pN-Gi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 81 ---GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--L--GFPN-GIAFSPDGKTLYVA 151 (246)
T ss_dssp ---TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--E--SSEE-EEEEETTSSEEEEE
T ss_pred ---CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--c--cccc-ceEECCcchheeec
Confidence 01133444445555577877753322222112 569999999 766655421 1 1111 22222 33 66663
Q ss_pred cCCCCCCCccCcEEEEECCC--CcEEEeccCCCCCCCC-CCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEec
Q 010551 158 GGEDRSRKLLNDVHFLDLET--MTWDAVEVTQTPPAPR-YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP 234 (507)
Q Consensus 158 GG~~~~~~~~n~~~~~d~~t--~~W~~~~~~~~~p~~r-~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~ 234 (507)
-- ..+.+++|++.. ..+.........+... .--.+++-.++.|||..- ..+.|++||+.-.....+
T Consensus 152 ds------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-----~~~~I~~~~p~G~~~~~i 220 (246)
T PF08450_consen 152 DS------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-----GGGRIVVFDPDGKLLREI 220 (246)
T ss_dssp ET------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-----TTTEEEEEETTSCEEEEE
T ss_pred cc------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-----CCCEEEEECCCccEEEEE
Confidence 22 245699999864 3344332211112121 122445545677888622 124799999985444444
No 76
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.98 E-value=0.16 Score=45.38 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=20.1
Q ss_pred hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHH
Q 010551 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ 458 (507)
Q Consensus 411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~ 458 (507)
....+...+...+.......++++..+.+++..++...++..++.++.
T Consensus 103 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 103 RIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444444444444444444444444444
No 77
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.93 E-value=1.6 Score=41.41 Aligned_cols=263 Identities=17% Similarity=0.125 Sum_probs=119.3
Q ss_pred CCCCeEeeCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcc
Q 010551 2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKT 79 (507)
Q Consensus 2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~ 79 (507)
|..++++|+.+++-...-.. ...++ +++.. +..+|+.++. .+.+.+||+.++.....-...
T Consensus 10 d~~v~~~d~~t~~~~~~~~~--~~~~~---~l~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~------- 72 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPV--GQRPR---GITLSKDGKLLYVCASD-----SDTIQVIDLATGEVIGTLPSG------- 72 (300)
T ss_pred CCEEEEEECCCCceEEEEEC--CCCCC---ceEECCCCCEEEEEECC-----CCeEEEEECCCCcEEEeccCC-------
Confidence 45577888887765443321 11122 23322 3457777653 246889999887654321111
Q ss_pred ccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEE-ECCEEEEE
Q 010551 80 EDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTL-VGSRLIIF 157 (507)
Q Consensus 80 ~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~iy~~ 157 (507)
..++ ..++.- ++.+|+.++. ...+.+||+.+.+-.... +......+++. -++.++++
T Consensus 73 --------~~~~--~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~~~~~-----~~~~~~~~~~~~~dg~~l~~ 131 (300)
T TIGR03866 73 --------PDPE--LFALHPNGKILYIANED------DNLVTVIDIETRKVLAEI-----PVGVEPEGMAVSPDGKIVVN 131 (300)
T ss_pred --------CCcc--EEEECCCCCEEEEEcCC------CCeEEEEECCCCeEEeEe-----eCCCCcceEEECCCCCEEEE
Confidence 1111 111111 3456666542 235899999886532211 11111122222 24566666
Q ss_pred cCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe-ccc
Q 010551 158 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEI 236 (507)
Q Consensus 158 GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~ 236 (507)
+..+ .+.++.||+.+..-......+. +. ..+....++..+++++..+ +.+.+||+.+.+... +..
T Consensus 132 ~~~~-----~~~~~~~d~~~~~~~~~~~~~~----~~-~~~~~s~dg~~l~~~~~~~----~~v~i~d~~~~~~~~~~~~ 197 (300)
T TIGR03866 132 TSET-----TNMAHFIDTKTYEIVDNVLVDQ----RP-RFAEFTADGKELWVSSEIG----GTVSVIDVATRKVIKKITF 197 (300)
T ss_pred EecC-----CCeEEEEeCCCCeEEEEEEcCC----Cc-cEEEECCCCCEEEEEcCCC----CEEEEEEcCcceeeeeeee
Confidence 5533 1346677887654332211111 11 1222223333444443222 368899998765422 111
Q ss_pred C--CCCCCCCCccEEEEE-CC-eEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEE
Q 010551 237 K--GDLVTGRAGHAGITI-DE-NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLV 312 (507)
Q Consensus 237 ~--~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (507)
. +..+.......++.. ++ .+|+..+.+ +.+.++|..+..-...... + +...+....+.+.+|+
T Consensus 198 ~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-----~~i~v~d~~~~~~~~~~~~-~-------~~~~~~~~~~~g~~l~ 264 (300)
T TIGR03866 198 EIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-----NRVAVVDAKTYEVLDYLLV-G-------QRVWQLAFTPDEKYLL 264 (300)
T ss_pred cccccccccCCccceEECCCCCEEEEEcCCC-----CeEEEEECCCCcEEEEEEe-C-------CCcceEEECCCCCEEE
Confidence 1 111111111222222 23 445543322 3578889876543221111 1 1112233344455666
Q ss_pred EEccCCCCcCceEEEEECCCC
Q 010551 313 AFGGYNGKYNNEVFVMRLKPR 333 (507)
Q Consensus 313 v~GG~~~~~~~~~~~~~~~~~ 333 (507)
+..+. .+.+.++|+...
T Consensus 265 ~~~~~----~~~i~v~d~~~~ 281 (300)
T TIGR03866 265 TTNGV----SNDVSVIDVAAL 281 (300)
T ss_pred EEcCC----CCeEEEEECCCC
Confidence 54443 346888888654
No 78
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.91 E-value=2.4 Score=43.32 Aligned_cols=192 Identities=7% Similarity=-0.029 Sum_probs=96.2
Q ss_pred CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551 53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 131 (507)
..++++|+.++..+.+..... ........- |..|++...... ..++|.+|+.++.-..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g-----------------~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~ 284 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPG-----------------MTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTR 284 (435)
T ss_pred CEEEEEECCCCcEEEeecCCC-----------------cccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEE
Confidence 579999999988776653221 111111222 345544433222 3469999999988776
Q ss_pred eecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEc
Q 010551 132 METSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG 210 (507)
Q Consensus 132 ~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G 210 (507)
+.. .+. ........-++ +|++.....+ ...+|++|+.+...+.+... ..........-+++.|++..
T Consensus 285 Lt~---~~~-~~~~~~~spDG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 285 LTD---SPA-IDTSPSYSPDGSQIVFESDRSG----SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred ccC---CCC-ccCceeEcCCCCEEEEEECCCC----CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEE
Confidence 642 111 11111222234 4544322211 34799999988877777531 11111111222345454433
Q ss_pred CCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCC-CcceEEEEECCCCcEEEec
Q 010551 211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN-GCQETIVLNMTKLAWSILT 285 (507)
Q Consensus 211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~d~~~~~W~~v~ 285 (507)
. ... ...++++|+.+.....+.... ........-+++.+++....... ....+|++|+....-..++
T Consensus 353 ~-~~~--~~~i~~~d~~~~~~~~lt~~~-----~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 353 Q-GGG--QFSIGVMKPDGSGERILTSGF-----LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred c-CCC--ceEEEEEECCCCceEeccCCC-----CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 2 111 247899998776665543211 11111122245555553322221 1257899999887666654
No 79
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.88 E-value=1.1 Score=41.60 Aligned_cols=202 Identities=15% Similarity=0.121 Sum_probs=111.1
Q ss_pred eeEEE-ECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEE
Q 010551 94 HCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF 172 (507)
Q Consensus 94 ~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~ 172 (507)
-++.. .++.||.--|..+ .+.+..||+.|++-.... ++|....+=.++.++++||..-=. .+.+++
T Consensus 48 QGL~~~~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~ 114 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYG----QSSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWK------EGTGFV 114 (264)
T ss_dssp EEEEEEETTEEEEEECSTT----EEEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESS------SSEEEE
T ss_pred ccEEecCCCEEEEeCCCCC----cEEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEec------CCeEEE
Confidence 34554 5788999888765 456999999999876655 678878888999999999987654 346899
Q ss_pred EECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe-cccC-CCCCCCCCccEEE
Q 010551 173 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIK-GDLVTGRAGHAGI 250 (507)
Q Consensus 173 ~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~-~~~p~~r~~~~~~ 250 (507)
||+.+.+ .+.. .+.+.-+-+++ .+++.+++--|. +.++.+|+.+.+-.. +.+. ...|..+ ---+-
T Consensus 115 yd~~tl~--~~~~---~~y~~EGWGLt-~dg~~Li~SDGS------~~L~~~dP~~f~~~~~i~V~~~g~pv~~-LNELE 181 (264)
T PF05096_consen 115 YDPNTLK--KIGT---FPYPGEGWGLT-SDGKRLIMSDGS------SRLYFLDPETFKEVRTIQVTDNGRPVSN-LNELE 181 (264)
T ss_dssp EETTTTE--EEEE---EE-SSS--EEE-ECSSCEEEE-SS------SEEEEE-TTT-SEEEEEE-EETTEE----EEEEE
T ss_pred Eccccce--EEEE---EecCCcceEEE-cCCCEEEEECCc------cceEEECCcccceEEEEEEEECCEECCC-cEeEE
Confidence 9998753 3321 33345667777 445668887774 579999998765433 2211 1122211 11233
Q ss_pred EECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCC-----CC--CCCCceEEEEE-cCceEEEEEccCCCCcC
Q 010551 251 TIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNP-----LA--SEGLSVCSAII-EGEHHLVAFGGYNGKYN 322 (507)
Q Consensus 251 ~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~-----~~--~~~~~~~~~~~-~~~~~l~v~GG~~~~~~ 322 (507)
.+++.+|.= --..+.+.+.|+.++.-..+-++.+..+ .. .....+.-+.. +..+.++|.|= ..
T Consensus 182 ~i~G~IyAN-----VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK----~W 252 (264)
T PF05096_consen 182 YINGKIYAN-----VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK----LW 252 (264)
T ss_dssp EETTEEEEE-----ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET----T-
T ss_pred EEcCEEEEE-----eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC----CC
Confidence 344544431 1124568899999997555433321110 00 01222333333 45678888764 34
Q ss_pred ceEEEEEC
Q 010551 323 NEVFVMRL 330 (507)
Q Consensus 323 ~~~~~~~~ 330 (507)
..+|...+
T Consensus 253 p~lyeV~l 260 (264)
T PF05096_consen 253 PKLYEVKL 260 (264)
T ss_dssp SEEEEEEE
T ss_pred CceEEEEE
Confidence 55555443
No 80
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.84 E-value=0.07 Score=51.40 Aligned_cols=8 Identities=38% Similarity=0.593 Sum_probs=4.1
Q ss_pred ceeeeecC
Q 010551 498 GVWRWIAG 505 (507)
Q Consensus 498 g~~~~~~~ 505 (507)
|..|=|+|
T Consensus 148 G~fGTING 155 (314)
T PF04111_consen 148 GPFGTING 155 (314)
T ss_dssp TTEEEETT
T ss_pred CCeeeECC
Confidence 45555554
No 81
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.83 E-value=0.26 Score=42.05 Aligned_cols=93 Identities=17% Similarity=0.284 Sum_probs=59.0
Q ss_pred HHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH-HHHHHHHHHHH
Q 010551 398 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQ 476 (507)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-~le~e~~~~~~ 476 (507)
++.+...+.....+...++..++.++.++++.++++...+.....++.++..++..+...++++++.. .++....++..
T Consensus 54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~ 133 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEH 133 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555566777777777777777777777777777766666666666666666666666665 44444555555
Q ss_pred hHHHHHHHHHHhhc
Q 010551 477 QKSAFEQEMERATS 490 (507)
Q Consensus 477 ~~~~~~~~~~~~~~ 490 (507)
++-+.+.|.+.+..
T Consensus 134 e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 134 ELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHH
Confidence 55566666655443
No 82
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.83 E-value=2.6 Score=43.16 Aligned_cols=185 Identities=10% Similarity=0.025 Sum_probs=93.5
Q ss_pred CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEe
Q 010551 53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 132 (507)
Q Consensus 53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 132 (507)
..++++|+.++.-..+..... .-.......-++.|++....++ ...+|.+|+.++..+.+
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g----------------~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~l 301 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPG----------------INGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRI 301 (448)
T ss_pred cEEEEEECCCCCeEEecCCCC----------------CcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEEC
Confidence 579999998877655543211 0011111112445655443222 34699999999988776
Q ss_pred ecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcC
Q 010551 133 ETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG 211 (507)
Q Consensus 133 ~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG 211 (507)
... + .........-++ .|++....++ ...+|.+|+.++++..+...+.. .......-++++|++.+.
T Consensus 302 t~~---~-~~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 302 TRH---R-AIDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNR 369 (448)
T ss_pred ccC---C-CCccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEe
Confidence 521 1 111111112234 5555433222 35799999999999887532211 111122223454554432
Q ss_pred CCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCC
Q 010551 212 CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL 279 (507)
Q Consensus 212 ~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~ 279 (507)
... ...++.+|+.++....+.... ... ..+ ..-+++.+++....+ ....+++++....
T Consensus 370 -~~g--~~~I~~~dl~~g~~~~lt~~~---~d~-~ps-~spdG~~I~~~~~~~--g~~~l~~~~~~G~ 427 (448)
T PRK04792 370 -TNG--KFNIARQDLETGAMQVLTSTR---LDE-SPS-VAPNGTMVIYSTTYQ--GKQVLAAVSIDGR 427 (448)
T ss_pred -cCC--ceEEEEEECCCCCeEEccCCC---CCC-Cce-ECCCCCEEEEEEecC--CceEEEEEECCCC
Confidence 221 246899999998877654211 111 111 223444444433221 2345788887444
No 83
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=95.82 E-value=0.16 Score=51.07 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcccc--cCCCceee
Q 010551 467 IENEVQILRQQKSAFEQEMERATSVQT--QGSGGVWR 501 (507)
Q Consensus 467 le~e~~~~~~~~~~~~~~~~~~~~~~~--q~~~g~~~ 501 (507)
|..++..+.+.-.++.++-..+...++ .+.+|.||
T Consensus 170 L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WG 206 (475)
T PRK10361 170 LAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWG 206 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchH
Confidence 333344443333344444333444454 36789997
No 84
>PTZ00421 coronin; Provisional
Probab=95.80 E-value=2.8 Score=43.34 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=34.7
Q ss_pred CEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCC
Q 010551 101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM 178 (507)
Q Consensus 101 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~ 178 (507)
+.+++.||.+ ..+.+||+.++.-...- .+ . .....++.+ ++.+++.|+.+. .+.+||+.++
T Consensus 138 ~~iLaSgs~D------gtVrIWDl~tg~~~~~l-~~-h---~~~V~sla~spdG~lLatgs~Dg------~IrIwD~rsg 200 (493)
T PTZ00421 138 MNVLASAGAD------MVVNVWDVERGKAVEVI-KC-H---SDQITSLEWNLDGSLLCTTSKDK------KLNIIDPRDG 200 (493)
T ss_pred CCEEEEEeCC------CEEEEEECCCCeEEEEE-cC-C---CCceEEEEEECCCCEEEEecCCC------EEEEEECCCC
Confidence 4566666643 24888898877532211 00 0 111122222 567777777653 5889999876
Q ss_pred c
Q 010551 179 T 179 (507)
Q Consensus 179 ~ 179 (507)
+
T Consensus 201 ~ 201 (493)
T PTZ00421 201 T 201 (493)
T ss_pred c
Confidence 5
No 85
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.71 E-value=2.8 Score=42.71 Aligned_cols=189 Identities=10% Similarity=0.033 Sum_probs=96.7
Q ss_pred CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551 53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 131 (507)
..++++|+.++.-..+.... .........- +.+|++.....+ ...++++|+.++.-..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~-----------------g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~ 286 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFR-----------------GINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTR 286 (433)
T ss_pred cEEEEEECCCCCEEEeccCC-----------------CCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEE
Confidence 56999999888766654321 1111111122 345554432222 2469999999988766
Q ss_pred eecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEE-EcCCEEEEE
Q 010551 132 METSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL-HANRYLIVF 209 (507)
Q Consensus 132 ~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~~l~v~ 209 (507)
+... +. ........-++ +|++.....+ ...+|.+|+.++....+...+ ........ -++++|++.
T Consensus 287 lt~~---~~-~~~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 287 LTNH---FG-IDTEPTWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMV 353 (433)
T ss_pred CccC---CC-CccceEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEE
Confidence 5421 11 11111112234 4544432221 246999999888888775432 11222222 234555554
Q ss_pred cCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEec
Q 010551 210 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT 285 (507)
Q Consensus 210 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~ 285 (507)
.+.++ ...++++|+.++....+.. +. . .......-+++.+++.... .....++.+++....=..+.
T Consensus 354 ~~~~~---~~~I~v~d~~~g~~~~Lt~-~~--~--~~~p~~spdG~~i~~~s~~--~g~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 354 HGSGG---QYRIAVMDLSTGSVRTLTP-GS--L--DESPSFAPNGSMVLYATRE--GGRGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred ECCCC---ceeEEEEECCCCCeEECCC-CC--C--CCCceECCCCCEEEEEEec--CCceEEEEEECCCCceEEcc
Confidence 44221 1379999999888876532 11 1 1111222345555554332 22356888888665434443
No 86
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.70 E-value=0.75 Score=46.60 Aligned_cols=255 Identities=14% Similarity=0.034 Sum_probs=128.9
Q ss_pred CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCcccee-EEEE-CCEEEEEeccCCC--
Q 010551 37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHC-MVKW-GTKLLILGGHYKK-- 112 (507)
Q Consensus 37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~-~~~~-~~~lyv~GG~~~~-- 112 (507)
+++.++++=..++.....+.++|+.++....-.. ....++ ++-. ++..+++......
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-------------------~~~~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-------------------ENPKFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-------------------EEEESEEEEECTTSSEEEEEECSTTTS
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-------------------cccccceEEEeCCCCEEEEEEeCcccc
Confidence 5566665543334445679999999984432111 122222 3333 3345444444332
Q ss_pred ---CCCcceEEEEECCCCcEE-EeecCCCCCCCCc-CcEEEEE-CC-EEEEEcCCCCCCCccCcEEEEECCCC-----cE
Q 010551 113 ---SSDSMIVRFIDLETNLCG-VMETSGKVPVTRG-GHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETM-----TW 180 (507)
Q Consensus 113 ---~~~~~~~~~yd~~t~~W~-~~~~~g~~p~~r~-~~~~~~~-~~-~iy~~GG~~~~~~~~n~~~~~d~~t~-----~W 180 (507)
......++.+...+..-. .+.. ..+.... ...+..- ++ .|++.-+.... .++++.+|.... .|
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvf--e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---~s~v~~~d~~~~~~~~~~~ 269 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVF--EEPDEPFWFVSVSRSKDGRYLFISSSSGTS---ESEVYLLDLDDGGSPDAKP 269 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEE--C-TTCTTSEEEEEE-TTSSEEEEEEESSSS---EEEEEEEECCCTTTSS-SE
T ss_pred cccCCCCcEEEEEECCCChHhCeeEE--eecCCCcEEEEEEecCcccEEEEEEEcccc---CCeEEEEeccccCCCcCCc
Confidence 113567899988887654 1221 1222222 2222222 33 44443333221 378999999875 78
Q ss_pred EEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc---EEecccCCCCCCCCCccEEEEECCeEE
Q 010551 181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE---WSQPEIKGDLVTGRAGHAGITIDENWY 257 (507)
Q Consensus 181 ~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~---W~~~~~~~~~p~~r~~~~~~~~~~~l~ 257 (507)
..+... ....+..+...++.+|+.-. .......|..+++.... |..+- .+.......-.+...+++|+
T Consensus 270 ~~l~~~-----~~~~~~~v~~~~~~~yi~Tn--~~a~~~~l~~~~l~~~~~~~~~~~l--~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 270 KLLSPR-----EDGVEYYVDHHGDRLYILTN--DDAPNGRLVAVDLADPSPAEWWTVL--IPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp EEEEES-----SSS-EEEEEEETTEEEEEE---TT-TT-EEEEEETTSTSGGGEEEEE--E--SSSEEEEEEEEETTEEE
T ss_pred EEEeCC-----CCceEEEEEccCCEEEEeeC--CCCCCcEEEEecccccccccceeEE--cCCCCceeEEEEEEECCEEE
Confidence 888531 11222233344666887655 23334578899988765 66421 11111122334455678887
Q ss_pred EEeccCCCCCcceEEEEECC-CCcEEEeccCCCCCCCCCCCCceEEE-EEcCceEEEEEccCCCCcCceEEEEECCCCCC
Q 010551 258 IVGGGDNNNGCQETIVLNMT-KLAWSILTSVKGRNPLASEGLSVCSA-IIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI 335 (507)
Q Consensus 258 v~GG~~~~~~~~~~~~~d~~-~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~w 335 (507)
+.-= ......+.++++. +..-..++.+ .. +...... -..++...|.+.++. ....+|.||+.+...
T Consensus 341 l~~~---~~~~~~l~v~~~~~~~~~~~~~~p-~~------g~v~~~~~~~~~~~~~~~~ss~~--~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 341 LSYR---ENGSSRLRVYDLDDGKESREIPLP-EA------GSVSGVSGDFDSDELRFSYSSFT--TPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEE---ETTEEEEEEEETT-TEEEEEEESS-SS------SEEEEEES-TT-SEEEEEEEETT--EEEEEEEEETTTTCE
T ss_pred EEEE---ECCccEEEEEECCCCcEEeeecCC-cc------eEEeccCCCCCCCEEEEEEeCCC--CCCEEEEEECCCCCE
Confidence 7632 2345678999998 4444444322 11 2111111 112245566677755 467899999987754
Q ss_pred C
Q 010551 336 P 336 (507)
Q Consensus 336 ~ 336 (507)
.
T Consensus 409 ~ 409 (414)
T PF02897_consen 409 T 409 (414)
T ss_dssp E
T ss_pred E
Confidence 3
No 87
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.68 E-value=0.19 Score=48.98 Aligned_cols=13 Identities=15% Similarity=0.491 Sum_probs=6.1
Q ss_pred EEEEECCCC-cEEE
Q 010551 271 TIVLNMTKL-AWSI 283 (507)
Q Consensus 271 ~~~~d~~~~-~W~~ 283 (507)
+|.+++.+. .|..
T Consensus 269 ~yalel~tqrVWDY 282 (493)
T KOG0804|consen 269 CYALELETQRVWDY 282 (493)
T ss_pred eEEEeecceeeeec
Confidence 455555443 3544
No 88
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.63 E-value=0.22 Score=47.84 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=7.0
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 010551 470 EVQILRQQKSAFEQEMER 487 (507)
Q Consensus 470 e~~~~~~~~~~~~~~~~~ 487 (507)
.++....+++.++.++.+
T Consensus 240 ~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 240 KIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333344444333
No 89
>PRK11637 AmiB activator; Provisional
Probab=95.63 E-value=0.093 Score=53.34 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHh
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 463 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~ 463 (507)
+++++.+..+.+..+.....+..++..++..++.++.+..+++...+.++...+.++.+++.++.++++++..
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333333444444444444444444444444444444444444444444444444443333
No 90
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.59 E-value=0.2 Score=48.79 Aligned_cols=9 Identities=22% Similarity=0.025 Sum_probs=3.3
Q ss_pred HHHHHHhHH
Q 010551 471 VQILRQQKS 479 (507)
Q Consensus 471 ~~~~~~~~~ 479 (507)
+++++.+++
T Consensus 253 k~~l~~eI~ 261 (325)
T PF08317_consen 253 KQELLAEIA 261 (325)
T ss_pred HHHHHHHHH
Confidence 333333333
No 91
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.56 E-value=3.3 Score=42.43 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=80.3
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551 116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 195 (507)
Q Consensus 116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~ 195 (507)
...+|++|+.++.-+.+. ..+......+...-+..|++....++ ..+++.+|+.+++...+.... . ..
T Consensus 241 ~~~L~~~dl~tg~~~~lt---~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~----~-~~ 308 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVT---SFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHR----A-ID 308 (448)
T ss_pred CcEEEEEECCCCCeEEec---CCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCC----C-Cc
Confidence 346999999998876664 22221111111112345665543322 357999999999887775321 1 11
Q ss_pred ceEEE-EcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEE
Q 010551 196 HSAAL-HANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 274 (507)
Q Consensus 196 ~~~~~-~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 274 (507)
...+. -+++.|++....++ ...+|.+|+.++++..+...+.. .......-+++.+++.+.. .....++++
T Consensus 309 ~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~--~g~~~I~~~ 379 (448)
T PRK04792 309 TEPSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNRT--NGKFNIARQ 379 (448)
T ss_pred cceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEec--CCceEEEEE
Confidence 11222 23444554432222 25799999999988876422211 1111122244444443322 223478999
Q ss_pred ECCCCcEEEecc
Q 010551 275 NMTKLAWSILTS 286 (507)
Q Consensus 275 d~~~~~W~~v~~ 286 (507)
|+.+...+.+..
T Consensus 380 dl~~g~~~~lt~ 391 (448)
T PRK04792 380 DLETGAMQVLTS 391 (448)
T ss_pred ECCCCCeEEccC
Confidence 999988776643
No 92
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.42 E-value=1 Score=44.37 Aligned_cols=150 Identities=15% Similarity=0.146 Sum_probs=84.8
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCc--EEEEECCE-EEEEcCCCCCCCccCcEEEEECC
Q 010551 100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGH--SVTLVGSR-LIIFGGEDRSRKLLNDVHFLDLE 176 (507)
Q Consensus 100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~--~~~~~~~~-iy~~GG~~~~~~~~n~~~~~d~~ 176 (507)
.--|.+.+|.+.. -.+|..|-.++. .+. ++-..++-. ++..-++. .++++|.. .-+|.||+.
T Consensus 224 ~~plllvaG~d~~----lrifqvDGk~N~--~lq---S~~l~~fPi~~a~f~p~G~~~i~~s~rr------ky~ysyDle 288 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT----LRIFQVDGKVNP--KLQ---SIHLEKFPIQKAEFAPNGHSVIFTSGRR------KYLYSYDLE 288 (514)
T ss_pred CCceEEEecCCCc----EEEEEecCccCh--hhe---eeeeccCccceeeecCCCceEEEecccc------eEEEEeecc
Confidence 4568888887653 235555555554 222 222222211 12222444 77777764 348999999
Q ss_pred CCcEEEeccCCCCCCCCCCceE-EEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCe
Q 010551 177 TMTWDAVEVTQTPPAPRYDHSA-ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN 255 (507)
Q Consensus 177 t~~W~~~~~~~~~p~~r~~~~~-~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 255 (507)
+.+-+.+.+....+ .++.+.. +..+++ ++++-|..+ -|+++...|+.|..- -.++.....++....+..
T Consensus 289 ~ak~~k~~~~~g~e-~~~~e~FeVShd~~-fia~~G~~G-----~I~lLhakT~eli~s---~KieG~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVE-EKSMERFEVSHDSN-FIAIAGNNG-----HIHLLHAKTKELITS---FKIEGVVSDFTFSSDSKE 358 (514)
T ss_pred ccccccccCCCCcc-cchhheeEecCCCC-eEEEcccCc-----eEEeehhhhhhhhhe---eeeccEEeeEEEecCCcE
Confidence 99999998765555 3334444 344455 666666433 477888888887641 112222222332323446
Q ss_pred EEEEeccCCCCCcceEEEEECCCCc
Q 010551 256 WYIVGGGDNNNGCQETIVLNMTKLA 280 (507)
Q Consensus 256 l~v~GG~~~~~~~~~~~~~d~~~~~ 280 (507)
|+++||.. .+|++|+..+.
T Consensus 359 l~~~~~~G------eV~v~nl~~~~ 377 (514)
T KOG2055|consen 359 LLASGGTG------EVYVWNLRQNS 377 (514)
T ss_pred EEEEcCCc------eEEEEecCCcc
Confidence 67776632 69999998884
No 93
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=95.41 E-value=0.091 Score=46.03 Aligned_cols=73 Identities=21% Similarity=0.369 Sum_probs=46.7
Q ss_pred HHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHH
Q 010551 407 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKS 479 (507)
Q Consensus 407 ~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~ 479 (507)
..++...+++.++++...+.+++.+++++.+.+++..++++..++.+...++++++... +|++...++....+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence 34445566667777777777777777777777777777777777766665555544433 55555555544433
No 94
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.32 E-value=0.62 Score=38.67 Aligned_cols=74 Identities=14% Similarity=0.216 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 464 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~ 464 (507)
+..+..+....+..+.....+...-+..+..++.+++....+++....++...++.-..+.+.+++.+.+...+
T Consensus 26 v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 26 VESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444444444444444444444444444433333444444444333333
No 95
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.25 E-value=0.4 Score=46.07 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=5.5
Q ss_pred HHHHHHHHhHHHHH
Q 010551 469 NEVQILRQQKSAFE 482 (507)
Q Consensus 469 ~e~~~~~~~~~~~~ 482 (507)
.++++++.++...+
T Consensus 246 ~~k~e~~~~I~~ae 259 (312)
T smart00787 246 NKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 96
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.19 Score=51.08 Aligned_cols=79 Identities=13% Similarity=0.276 Sum_probs=35.6
Q ss_pred hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHH-------HHHhHHHHHHHHHHHHHhHHHHHH
Q 010551 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK-------MLESSQTIENEVQILRQQKSAFEQ 483 (507)
Q Consensus 411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~-------~~~~~~~le~e~~~~~~~~~~~~~ 483 (507)
+...+...++.++.++.+++.++.+.+.++++++.++..+...+..... ...++..|++++++.....++|++
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555554444444444444444444333332222 222333444444444444455555
Q ss_pred HHHHhh
Q 010551 484 EMERAT 489 (507)
Q Consensus 484 ~~~~~~ 489 (507)
.+.+..
T Consensus 503 ~l~~l~ 508 (652)
T COG2433 503 KLAELR 508 (652)
T ss_pred HHHHHH
Confidence 554443
No 97
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.15 E-value=4.3 Score=41.30 Aligned_cols=148 Identities=12% Similarity=0.101 Sum_probs=77.7
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551 117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 195 (507)
Q Consensus 117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~ 195 (507)
..+|++|+.++.-+.+.. .+. ........-++ +|++....++ ..+++++|+.+.....+... + .. .
T Consensus 223 ~~l~~~~l~~g~~~~l~~---~~g-~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~-~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN---FEG-LNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNH---P-AI-D 289 (430)
T ss_pred CEEEEEECCCCCEEEccC---CCC-CcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccC---C-CC-c
Confidence 469999999998776642 111 11111111233 5554332221 25799999999988776431 1 11 1
Q ss_pred ceEEEE-cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEE
Q 010551 196 HSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 274 (507)
Q Consensus 196 ~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 274 (507)
...... +++.|++.....+ ...+|.+|+.++.+..+...+ .........-+++.+++..... ...+++++
T Consensus 290 ~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~~--~~~~l~~~ 360 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHRQD--GNFHVAAQ 360 (430)
T ss_pred CCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEccC--CceEEEEE
Confidence 112222 3444554432221 247999999998887764211 1111111122333333332221 13469999
Q ss_pred ECCCCcEEEecc
Q 010551 275 NMTKLAWSILTS 286 (507)
Q Consensus 275 d~~~~~W~~v~~ 286 (507)
|+.+...+.+..
T Consensus 361 dl~tg~~~~lt~ 372 (430)
T PRK00178 361 DLQRGSVRILTD 372 (430)
T ss_pred ECCCCCEEEccC
Confidence 999988877754
No 98
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.13 E-value=4.4 Score=41.32 Aligned_cols=188 Identities=14% Similarity=0.072 Sum_probs=90.4
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCc
Q 010551 117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 196 (507)
Q Consensus 117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~ 196 (507)
..++++|+.++....+. ..+......+...-+.+|++....++ ..++|.+|+.+..-..+... + .....
T Consensus 226 ~~i~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~---~-~~~~~ 294 (435)
T PRK05137 226 PRVYLLDLETGQRELVG---NFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDS---P-AIDTS 294 (435)
T ss_pred CEEEEEECCCCcEEEee---cCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCC---C-CccCc
Confidence 46999999999887765 22222111111112335554433322 35799999998887766431 1 11111
Q ss_pred eEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEEC
Q 010551 197 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM 276 (507)
Q Consensus 197 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~ 276 (507)
....-+++.|++.....+ ...+|++|+.+.....+... ..........-+++.+++..... ....++++|+
T Consensus 295 ~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~--~~~~i~~~d~ 365 (435)
T PRK05137 295 PSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGG--GQFSIGVMKP 365 (435)
T ss_pred eeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEcCC--CceEEEEEEC
Confidence 112223444443322211 24799999988777765321 11111111222344333332211 2347889998
Q ss_pred CCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCc-CceEEEEECCCC
Q 010551 277 TKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKY-NNEVFVMRLKPR 333 (507)
Q Consensus 277 ~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~~~~~ 333 (507)
.+.....+.... . .......+++.+|+......+.. ...+|.+++...
T Consensus 366 ~~~~~~~lt~~~-~--------~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 366 DGSGERILTSGF-L--------VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCCceEeccCCC-C--------CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 777665543211 0 01111223333444333222221 257899988654
No 99
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.06 E-value=4.4 Score=40.92 Aligned_cols=147 Identities=12% Similarity=0.086 Sum_probs=78.5
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551 117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 195 (507)
Q Consensus 117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~ 195 (507)
..++++|+.++.-..+.. .+..... ....-++ .|++....+. ..+++.+|+.+.....+..... ...
T Consensus 214 ~~i~v~d~~~g~~~~~~~---~~~~~~~-~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~---~~~- 281 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS---FPGMNGA-PAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPG---IDT- 281 (417)
T ss_pred cEEEEEECCCCCEEEeec---CCCCccc-eEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCC---CCC-
Confidence 469999999987666542 2211111 1122233 5655443322 3579999999888777653211 110
Q ss_pred ceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEE-EECCeEEEEeccCCCCCcceEEEE
Q 010551 196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI-TIDENWYIVGGGDNNNGCQETIVL 274 (507)
Q Consensus 196 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~ 274 (507)
.....-++++|++.....+ ...+|.+|+.++.+..+...+ ....... .-+++.+++..... ....++++
T Consensus 282 ~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~ 351 (417)
T TIGR02800 282 EPSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG--GGFNIAVM 351 (417)
T ss_pred CEEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccC--CceEEEEE
Confidence 1111123444544433222 247999999988877654221 1111222 22455555544322 33578999
Q ss_pred ECCCCcEEEec
Q 010551 275 NMTKLAWSILT 285 (507)
Q Consensus 275 d~~~~~W~~v~ 285 (507)
|+.+..++.+.
T Consensus 352 d~~~~~~~~l~ 362 (417)
T TIGR02800 352 DLDGGGERVLT 362 (417)
T ss_pred eCCCCCeEEcc
Confidence 99987776654
No 100
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.03 E-value=5.1 Score=41.56 Aligned_cols=259 Identities=15% Similarity=0.060 Sum_probs=114.5
Q ss_pred CCCCeEeeCCC--CceEEeecCCCCCCccccceEEEECCEEEEEcCCCCC----ccCCceEEEEccCCc--eeeeccccc
Q 010551 2 DSGSWHLELPY--DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNG----RFLSDVQVFDLRSLA--WSNLRLETE 73 (507)
Q Consensus 2 ~~~~~~~d~~~--~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~----~~~~~~~~~d~~~~~--W~~~~~~~~ 73 (507)
|..++++|..+ -.|..-......+......+.++.++.+|+ |..... .....++.||..+++ |+.-.....
T Consensus 119 ~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~ 197 (488)
T cd00216 119 DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD 197 (488)
T ss_pred CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCC
Confidence 34567788765 467765421100111123344555666554 432211 123578999998875 765432211
Q ss_pred cCCCccccCC--CcCCCCCccceeEEE--ECCEEEEEeccCC-----------CCCCcceEEEEECCCCc--EEEeecCC
Q 010551 74 LDADKTEDSG--LLEVLPPMSDHCMVK--WGTKLLILGGHYK-----------KSSDSMIVRFIDLETNL--CGVMETSG 136 (507)
Q Consensus 74 ~~~~~~~~~~--~~~~p~~r~~~~~~~--~~~~lyv~GG~~~-----------~~~~~~~~~~yd~~t~~--W~~~~~~g 136 (507)
..+.+..... ......+....+.+. .++.+|+-.|... .....+.++.+|..|++ |+.-....
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~ 277 (488)
T cd00216 198 PNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH 277 (488)
T ss_pred cCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC
Confidence 0000000000 000000111112222 2456666544321 11134579999999885 87543110
Q ss_pred CCCCCCcCc--EEEE---ECC---EEEEEcCCCCCCCccCcEEEEECCCCc--EEEeccCCCCCCCCCCceEEEEcCCEE
Q 010551 137 KVPVTRGGH--SVTL---VGS---RLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYL 206 (507)
Q Consensus 137 ~~p~~r~~~--~~~~---~~~---~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~l 206 (507)
+....+... .+.. +++ .++++|..+ ..++.||..+++ |+.-..... +. ...+.+
T Consensus 278 ~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~------G~l~ald~~tG~~~W~~~~~~~~---------~~-~~~~~v 341 (488)
T cd00216 278 DLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN------GFFYVLDRTTGKLISARPEVEQP---------MA-YDPGLV 341 (488)
T ss_pred CCcccccCCCCeEEeccccCCCeeEEEEEECCC------ceEEEEECCCCcEeeEeEeeccc---------cc-cCCceE
Confidence 100001111 1111 233 245555543 349999998876 875432101 11 112445
Q ss_pred EEEcCCC------------CCCCCCcEEEEECCCCc--EEecccCCC-C---CCCCCccEEEEECCeEEEEeccCCCCCc
Q 010551 207 IVFGGCS------------HSIFFNDLHVLDLQTNE--WSQPEIKGD-L---VTGRAGHAGITIDENWYIVGGGDNNNGC 268 (507)
Q Consensus 207 ~v~GG~~------------~~~~~~~i~~~d~~~~~--W~~~~~~~~-~---p~~r~~~~~~~~~~~l~v~GG~~~~~~~ 268 (507)
|+-.... .......++.+|..+++ |+....... . ..+.....+++.++. +++|..++
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~-v~~g~~dG---- 416 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNL-VFAGAADG---- 416 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCe-EEEECCCC----
Confidence 5422110 01123458899998775 876421000 0 012222233444444 44444322
Q ss_pred ceEEEEECCCCc--EEE
Q 010551 269 QETIVLNMTKLA--WSI 283 (507)
Q Consensus 269 ~~~~~~d~~~~~--W~~ 283 (507)
.++.||..+.+ |+.
T Consensus 417 -~l~ald~~tG~~lW~~ 432 (488)
T cd00216 417 -YFRAFDATTGKELWKF 432 (488)
T ss_pred -eEEEEECCCCceeeEE
Confidence 58899988774 764
No 101
>PTZ00420 coronin; Provisional
Probab=95.02 E-value=5.5 Score=41.85 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=33.0
Q ss_pred CEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCC
Q 010551 101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM 178 (507)
Q Consensus 101 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~ 178 (507)
..+++.||.+ ..+.+||+.++.=.. .. ..+. ...++.+ ++.+++.++.+ ..+.+||+.+.
T Consensus 138 ~~iLaSgS~D------gtIrIWDl~tg~~~~-~i--~~~~---~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg 199 (568)
T PTZ00420 138 YYIMCSSGFD------SFVNIWDIENEKRAF-QI--NMPK---KLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQ 199 (568)
T ss_pred CeEEEEEeCC------CeEEEEECCCCcEEE-EE--ecCC---cEEEEEECCCCCEEEEEecC------CEEEEEECCCC
Confidence 3455566643 248888988775211 10 1111 1222323 56677766644 35899999876
Q ss_pred c
Q 010551 179 T 179 (507)
Q Consensus 179 ~ 179 (507)
.
T Consensus 200 ~ 200 (568)
T PTZ00420 200 E 200 (568)
T ss_pred c
Confidence 4
No 102
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.99 E-value=0.19 Score=50.79 Aligned_cols=69 Identities=10% Similarity=0.158 Sum_probs=27.9
Q ss_pred hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010551 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 479 (507)
Q Consensus 411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~ 479 (507)
..+.+.+.+..+..++++.+.|++.++.++..++..++...-..++.++.-++.+++++++..++.+++
T Consensus 288 k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d 356 (581)
T KOG0995|consen 288 KKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELD 356 (581)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444433322211222333333333344444444444443
No 103
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=94.97 E-value=2.7 Score=38.38 Aligned_cols=185 Identities=15% Similarity=0.175 Sum_probs=82.4
Q ss_pred CCCceEEeecCCCCCC-------ccccceEEEECCEEEEEcCCCCCccCCce--EEEEc-----cCCceeeeccccccCC
Q 010551 11 PYDLWVTLPVSGARPS-------PRYKHAAAVFDQKLYIVGGSRNGRFLSDV--QVFDL-----RSLAWSNLRLETELDA 76 (507)
Q Consensus 11 ~~~~W~~~~~~~~~p~-------~r~~~~~~~~~~~iyi~GG~~~~~~~~~~--~~~d~-----~~~~W~~~~~~~~~~~ 76 (507)
..+.|..-..+ ..|. ...-|+.+.+++.=|.+|=.+++.....+ ..|.. ....=+.++..-
T Consensus 113 ~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey---- 187 (367)
T PF12217_consen 113 HDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSEY---- 187 (367)
T ss_dssp TTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GGG----
T ss_pred ccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhhh----
Confidence 45667654322 3444 45678889998888888732222212222 22211 111112222211
Q ss_pred CccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEE
Q 010551 77 DKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLII 156 (507)
Q Consensus 77 ~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~ 156 (507)
.......++-..++.||+.--.......-+.+.+-+.....|+.+... --.-....-.+.+++.||+
T Consensus 188 -----------~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp--~nvHhtnlPFakvgD~l~m 254 (367)
T PF12217_consen 188 -----------ERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFP--NNVHHTNLPFAKVGDVLYM 254 (367)
T ss_dssp ------------TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-T--T---SS---EEEETTEEEE
T ss_pred -----------ccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcccc--ccccccCCCceeeCCEEEE
Confidence 112334455566999999865444444455677777777889998631 1112233345778999999
Q ss_pred EcCCCC---------CCCc---cCcEEEE-------ECCCCcEEEecc---CCCCCCCCCCceEEEEcCCEE-EEEcCCC
Q 010551 157 FGGEDR---------SRKL---LNDVHFL-------DLETMTWDAVEV---TQTPPAPRYDHSAALHANRYL-IVFGGCS 213 (507)
Q Consensus 157 ~GG~~~---------~~~~---~n~~~~~-------d~~t~~W~~~~~---~~~~p~~r~~~~~~~~~~~~l-~v~GG~~ 213 (507)
||.--. +..+ ....++. +++.-.|..+.. .|.....-.+.+.+++.++.| |+|||-+
T Consensus 255 FgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 255 FGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp EEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred EeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 986321 1111 1223332 334445666542 244555566667777888876 7888864
No 104
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.94 E-value=2.2 Score=39.65 Aligned_cols=154 Identities=21% Similarity=0.157 Sum_probs=88.2
Q ss_pred ECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCC
Q 010551 36 FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSD 115 (507)
Q Consensus 36 ~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~ 115 (507)
.++.||.--|..+ .+.+..||+.++.-...... |..-++-+++.++++||.+-=.
T Consensus 54 ~~g~LyESTG~yG---~S~l~~~d~~tg~~~~~~~l----------------~~~~FgEGit~~~d~l~qLTWk------ 108 (264)
T PF05096_consen 54 DDGTLYESTGLYG---QSSLRKVDLETGKVLQSVPL----------------PPRYFGEGITILGDKLYQLTWK------ 108 (264)
T ss_dssp ETTEEEEEECSTT---EEEEEEEETTTSSEEEEEE-----------------TTT--EEEEEEETTEEEEEESS------
T ss_pred CCCEEEEeCCCCC---cEEEEEEECCCCcEEEEEEC----------------CccccceeEEEECCEEEEEEec------
Confidence 3567777766543 36789999999876544433 3346788999999999998432
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEE-EeccCCC-CCCCC
Q 010551 116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD-AVEVTQT-PPAPR 193 (507)
Q Consensus 116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~-~~~~~~~-~p~~r 193 (507)
.....+||+.+.+ .+. ..+-+..+-.+|..+..||+--| ++.++.+||.+.+=. .+.++.. .|..+
T Consensus 109 ~~~~f~yd~~tl~--~~~---~~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 109 EGTGFVYDPNTLK--KIG---TFPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp SSEEEEEETTTTE--EEE---EEE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred CCeEEEEccccce--EEE---EEecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceEEEEEEEECCEECCC
Confidence 3458999998764 333 22333467777877778888777 456999999876532 2222111 11100
Q ss_pred CCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe
Q 010551 194 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ 233 (507)
Q Consensus 194 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~ 233 (507)
--=+-.+ +++||. +--..+.|.+.|+.++....
T Consensus 177 -LNELE~i-~G~IyA-----NVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 177 -LNELEYI-NGKIYA-----NVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp -EEEEEEE-TTEEEE-----EETTSSEEEEEETTT-BEEE
T ss_pred -cEeEEEE-cCEEEE-----EeCCCCeEEEEeCCCCeEEE
Confidence 0011112 333443 22345679999999997554
No 105
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.93 E-value=0.25 Score=47.61 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=6.9
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 010551 469 NEVQILRQQKSAFEQEME 486 (507)
Q Consensus 469 ~e~~~~~~~~~~~~~~~~ 486 (507)
++.+.+..+.+...++++
T Consensus 113 ~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 113 EERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 106
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=0.36 Score=50.35 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFR 416 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~ 416 (507)
+..|..+|+.+++..++.+++.++++
T Consensus 326 qaELerRRq~leeqqqreree~eqkE 351 (1118)
T KOG1029|consen 326 QAELERRRQALEEQQQREREEVEQKE 351 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666665555555544443
No 107
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.90 E-value=4.3 Score=39.97 Aligned_cols=278 Identities=16% Similarity=0.150 Sum_probs=130.3
Q ss_pred CeEeeCCCCceEEeecCCCCCCccccceEEE--ECCEEEEEcCCCCCccCCceEEEEccC--CceeeeccccccCCCccc
Q 010551 5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAV--FDQKLYIVGGSRNGRFLSDVQVFDLRS--LAWSNLRLETELDADKTE 80 (507)
Q Consensus 5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~--~~~~iyi~GG~~~~~~~~~~~~~d~~~--~~W~~~~~~~~~~~~~~~ 80 (507)
+|.||..+.++..+......+.|. -++. -++.||+..... .....+..|.... ++.+.+......
T Consensus 17 ~~~~d~~~g~l~~~~~~~~~~~Ps---~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~~~~------ 85 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAEGENPS---WLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSVPSG------ 85 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESSSEC---CEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEEEES------
T ss_pred EEEEcCCCCCceEeeeecCCCCCc---eEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeeeccC------
Confidence 345566899998887421122222 2233 367888886532 1234455555544 677766543211
Q ss_pred cCCCcCCCCCccceeEEEE---CCEEEEEeccCCCCCCcceEEEEECCC-CcEEEee----c--CCCCC---CCCcCcEE
Q 010551 81 DSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSSDSMIVRFIDLET-NLCGVME----T--SGKVP---VTRGGHSV 147 (507)
Q Consensus 81 ~~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~----~--~g~~p---~~r~~~~~ 147 (507)
+. ..+-+.+ +..||+.- +. ...+.+|++.. +.-.... . .|+.| .....|.+
T Consensus 86 ---------g~-~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v 149 (345)
T PF10282_consen 86 ---------GS-SPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV 149 (345)
T ss_dssp ---------SS-CEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE
T ss_pred ---------CC-CcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE
Confidence 12 2222233 45566642 21 23477777766 3333221 1 12221 12233444
Q ss_pred EEE-C-CEEEEEcCCCCCCCccCcEEEEECCCCc--EEEeccCCCCCCCCC-CceEEEEcCCEEEEEcCCCCCCCCCcEE
Q 010551 148 TLV-G-SRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRY-DHSAALHANRYLIVFGGCSHSIFFNDLH 222 (507)
Q Consensus 148 ~~~-~-~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~~~~~~p~~r~-~~~~~~~~~~~l~v~GG~~~~~~~~~i~ 222 (507)
... + +.+|+.. .+ .+.++.|+..... ....... ..|..-. .|.+..-+++++||..-.+ +.+.
T Consensus 150 ~~~pdg~~v~v~d-lG-----~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~ 217 (345)
T PF10282_consen 150 VFSPDGRFVYVPD-LG-----ADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVS 217 (345)
T ss_dssp EE-TTSSEEEEEE-TT-----TTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEE
T ss_pred EECCCCCEEEEEe-cC-----CCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCCC-----CcEE
Confidence 444 2 4666642 11 4568888887655 5443221 1121111 1222223457899976643 5666
Q ss_pred EEECC--CCcEEecccCCCCCC---CC-CccEEEEE--CCeEEEEeccCCCCCcceEEEEEC--CCCcEEEeccCCCCCC
Q 010551 223 VLDLQ--TNEWSQPEIKGDLVT---GR-AGHAGITI--DENWYIVGGGDNNNGCQETIVLNM--TKLAWSILTSVKGRNP 292 (507)
Q Consensus 223 ~~d~~--~~~W~~~~~~~~~p~---~r-~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~--~~~~W~~v~~~~~~~~ 292 (507)
.|+.. ++.++.+......|. .. ..+.+++. +..||+.-.. .+.+.+|++ .+...+.+...+..
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~~-- 290 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPTG-- 290 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEES--
T ss_pred EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeCC--
Confidence 66665 677766544333322 22 22233333 3467776332 445677776 44566655443311
Q ss_pred CCCCCCc-eEEEEEcCceEEEEEccCCCCcCceEEEE--ECCCCCCC
Q 010551 293 LASEGLS-VCSAIIEGEHHLVAFGGYNGKYNNEVFVM--RLKPRDIP 336 (507)
Q Consensus 293 ~~~~~~~-~~~~~~~~~~~l~v~GG~~~~~~~~~~~~--~~~~~~w~ 336 (507)
+.. ....+.+.+.+|+|.... .+.+.+| |..+..+.
T Consensus 291 ----G~~Pr~~~~s~~g~~l~Va~~~----s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 291 ----GKFPRHFAFSPDGRYLYVANQD----SNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp ----SSSEEEEEE-TTSSEEEEEETT----TTEEEEEEEETTTTEEE
T ss_pred ----CCCccEEEEeCCCCEEEEEecC----CCeEEEEEEeCCCCcEE
Confidence 111 223344556677775443 2345555 44444433
No 108
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.87 E-value=0.29 Score=47.85 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=13.2
Q ss_pred ccchhHHHhHHHHHhhHHHhhhhhhhhHHHH
Q 010551 424 STHSELSKELSSVQGQLVAERSRCFKLEAQI 454 (507)
Q Consensus 424 ~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~ 454 (507)
.+....+.+.+.++..+++++.++.+.+.++
T Consensus 368 ~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel 398 (493)
T KOG0804|consen 368 QESSDLEAEKKIVERKLQQLQTKLKKCQKEL 398 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443333
No 109
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.85 E-value=5.3 Score=40.76 Aligned_cols=146 Identities=12% Similarity=0.090 Sum_probs=76.8
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCC
Q 010551 116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 194 (507)
Q Consensus 116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~ 194 (507)
...++++|+.+++-..+. ..+.. .......-++ +|++....++ ..+++.+|+.++.-..+... + . .
T Consensus 227 ~~~l~~~dl~~g~~~~l~---~~~g~-~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~---~-~-~ 293 (433)
T PRK04922 227 RSAIYVQDLATGQRELVA---SFRGI-NGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNH---F-G-I 293 (433)
T ss_pred CcEEEEEECCCCCEEEec---cCCCC-ccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccC---C-C-C
Confidence 346999999998877665 22211 1111122233 5655433222 24799999998887665421 1 1 1
Q ss_pred CceEEEEcC-CEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEE-ECC-eEEEEeccCCCCCcceE
Q 010551 195 DHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT-IDE-NWYIVGGGDNNNGCQET 271 (507)
Q Consensus 195 ~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~-~l~v~GG~~~~~~~~~~ 271 (507)
........+ +.|++.....+ ...+|.+|+.++....+...+ ........ -++ .+++..+ . .....+
T Consensus 294 ~~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~-~--~~~~~I 362 (433)
T PRK04922 294 DTEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHG-S--GGQYRI 362 (433)
T ss_pred ccceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEEC-C--CCceeE
Confidence 112222333 43444332222 247999999888887764222 11112122 233 4444433 1 122378
Q ss_pred EEEECCCCcEEEec
Q 010551 272 IVLNMTKLAWSILT 285 (507)
Q Consensus 272 ~~~d~~~~~W~~v~ 285 (507)
+++|+.+.....+.
T Consensus 363 ~v~d~~~g~~~~Lt 376 (433)
T PRK04922 363 AVMDLSTGSVRTLT 376 (433)
T ss_pred EEEECCCCCeEECC
Confidence 99999888877664
No 110
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.84 E-value=0.45 Score=42.42 Aligned_cols=57 Identities=26% Similarity=0.386 Sum_probs=29.8
Q ss_pred HhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551 409 RTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 409 ~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
.++..++++.+.+...++.+.+......++.++..++++..++....++.++.++.+
T Consensus 94 ~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 94 QEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555555555555544444
No 111
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.82 E-value=0.49 Score=43.11 Aligned_cols=16 Identities=6% Similarity=0.310 Sum_probs=5.8
Q ss_pred HHHHHhhccchhHHHh
Q 010551 417 EKIDEVNSTHSELSKE 432 (507)
Q Consensus 417 ~~l~~~~~~~~e~~~e 432 (507)
..+..++.++++++.+
T Consensus 45 ~~~~~~~~e~e~le~q 60 (239)
T COG1579 45 KALEALEIELEDLENQ 60 (239)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 112
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.41 Score=48.82 Aligned_cols=83 Identities=20% Similarity=0.338 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhh---hhhhhhHHHHHHHHHHHHhH----H
Q 010551 393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER---SRCFKLEAQIAELQKMLESS----Q 465 (507)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~---~~~~~~e~~~~e~~~~~~~~----~ 465 (507)
....+...++..++....+++.|+..+++++.++++++.++.+.+.+..... .+++.++..+..++++|++. +
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve 498 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVE 498 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555666667777777777777777666666655544331 12222334444444443333 2
Q ss_pred HHHHHHHHHH
Q 010551 466 TIENEVQILR 475 (507)
Q Consensus 466 ~le~e~~~~~ 475 (507)
+|++++.++.
T Consensus 499 ~L~~~l~~l~ 508 (652)
T COG2433 499 ELERKLAELR 508 (652)
T ss_pred HHHHHHHHHH
Confidence 4555555444
No 113
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.81 E-value=0.78 Score=38.12 Aligned_cols=51 Identities=20% Similarity=0.325 Sum_probs=20.7
Q ss_pred HhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHH
Q 010551 409 RTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK 459 (507)
Q Consensus 409 ~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~ 459 (507)
+.+...|+.+++.+...+..++.+|..++.+...+...+++.+.++.+++.
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444444443333
No 114
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.79 E-value=2.8 Score=37.38 Aligned_cols=151 Identities=11% Similarity=0.087 Sum_probs=76.6
Q ss_pred EEEECCEEEEEeccCCCCCCcceEEEEECCCCcE--EEeecC-CCCCCCCcCcEEEEE-C-CEEEEEcCCCCCCCccCcE
Q 010551 96 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLC--GVMETS-GKVPVTRGGHSVTLV-G-SRLIIFGGEDRSRKLLNDV 170 (507)
Q Consensus 96 ~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W--~~~~~~-g~~p~~r~~~~~~~~-~-~~iy~~GG~~~~~~~~n~~ 170 (507)
++...+.+|+|-|. .+|+|+...... ..+... +.+|.. .. ++... . +++|+|-|. ..
T Consensus 12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~~-ID-Aa~~~~~~~~~yfFkg~--------~y 73 (194)
T cd00094 12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPSP-VD-AAFERPDTGKIYFFKGD--------KY 73 (194)
T ss_pred EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCCC-cc-EEEEECCCCEEEEECCC--------EE
Confidence 44456899999763 278887652211 122110 112221 12 22232 3 789999774 36
Q ss_pred EEEECCCCcEEEeccC---CCCCCCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCCCcEEe-----ccc-CCCC
Q 010551 171 HFLDLETMTWDAVEVT---QTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-----PEI-KGDL 240 (507)
Q Consensus 171 ~~~d~~t~~W~~~~~~---~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-----~~~-~~~~ 240 (507)
|+|+..+..+.-+... +.++.+..--++.... ++++|+|.| +..|+||...++... +.. -..+
T Consensus 74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~ 146 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGV 146 (194)
T ss_pred EEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCc
Confidence 7777654222111110 1111112122333333 678999988 478899976665431 100 0112
Q ss_pred CCCCCccEEEEEC-CeEEEEeccCCCCCcceEEEEECCCCc
Q 010551 241 VTGRAGHAGITID-ENWYIVGGGDNNNGCQETIVLNMTKLA 280 (507)
Q Consensus 241 p~~r~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~d~~~~~ 280 (507)
|. .-.++.... +++|+|-| +..|.||..+.+
T Consensus 147 p~--~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 147 PD--KVDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred CC--CcceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 22 122333344 78999966 367899987765
No 115
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.77 E-value=2.9 Score=37.34 Aligned_cols=159 Identities=13% Similarity=0.079 Sum_probs=74.8
Q ss_pred EEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCC-CCCCCceEEEEcC-CEEEEEcCCCCCCCCCcEEE
Q 010551 146 SVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP-APRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHV 223 (507)
Q Consensus 146 ~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p-~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~ 223 (507)
+++...+.+|+|-|. .+|+++..........+....| .+..--++....+ +.+|+|-| +..|+
T Consensus 11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg-------~~yw~ 75 (194)
T cd00094 11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKG-------DKYWV 75 (194)
T ss_pred eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECC-------CEEEE
Confidence 344456899999774 3677765421111111111111 1222233434333 78999977 36888
Q ss_pred EECCCCcEEecccCC--CCCC-CCCccEEEEE--CCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCC--CCCCC
Q 010551 224 LDLQTNEWSQPEIKG--DLVT-GRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRN--PLASE 296 (507)
Q Consensus 224 ~d~~~~~W~~~~~~~--~~p~-~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~--~~~~~ 296 (507)
|+..+.....+.... ..|. +..-.++... ++++|+|-| +..|.||...++... ..|... ..+-.
T Consensus 76 ~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~--~yP~~i~~~w~g~ 146 (194)
T cd00094 76 YTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDP--GYPKLIETDFPGV 146 (194)
T ss_pred EcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccC--CCCcchhhcCCCc
Confidence 887653332221111 1111 1112233333 578999977 357888876554321 011000 00000
Q ss_pred CCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCCC
Q 010551 297 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD 334 (507)
Q Consensus 297 ~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~ 334 (507)
.....++....+..+|.|-| +..|+||.....
T Consensus 147 p~~idaa~~~~~~~~yfF~g------~~y~~~d~~~~~ 178 (194)
T cd00094 147 PDKVDAAFRWLDGYYYFFKG------DQYWRFDPRSKE 178 (194)
T ss_pred CCCcceeEEeCCCcEEEEEC------CEEEEEeCccce
Confidence 01111222222246788777 568999986553
No 116
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.75 E-value=0.83 Score=40.91 Aligned_cols=39 Identities=26% Similarity=0.392 Sum_probs=22.7
Q ss_pred hhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhH
Q 010551 402 ELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL 440 (507)
Q Consensus 402 ~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~ 440 (507)
+....+...+..+|.+-|+.++.+.+++++++.......
T Consensus 47 ~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK 85 (201)
T PF13851_consen 47 EKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDK 85 (201)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666666666666655544433
No 117
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.71 E-value=0.63 Score=45.87 Aligned_cols=56 Identities=14% Similarity=0.280 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhh
Q 010551 393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCF 448 (507)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~ 448 (507)
+++.+...++..+.....+.++|+.+|.++++++..+++++.+....+.+.+.++.
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~ 97 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 33333333333444444445555555555555555554444444444444433333
No 118
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.60 E-value=4.8 Score=39.20 Aligned_cols=238 Identities=16% Similarity=0.064 Sum_probs=105.3
Q ss_pred EEEEEcCCCCCccCCceEEEEccC-CceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCC
Q 010551 39 KLYIVGGSRNGRFLSDVQVFDLRS-LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSD 115 (507)
Q Consensus 39 ~iyi~GG~~~~~~~~~~~~~d~~~-~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~ 115 (507)
.+|+..+. ...+.+||..+ ++++.+..... ....+.++.. ++.||+.+. .
T Consensus 3 ~~y~~~~~-----~~~I~~~~~~~~g~l~~~~~~~~----------------~~~~~~l~~spd~~~lyv~~~-~----- 55 (330)
T PRK11028 3 IVYIASPE-----SQQIHVWNLNHEGALTLLQVVDV----------------PGQVQPMVISPDKRHLYVGVR-P----- 55 (330)
T ss_pred EEEEEcCC-----CCCEEEEEECCCCceeeeeEEec----------------CCCCccEEECCCCCEEEEEEC-C-----
Confidence 46776543 25688888864 56665554321 0111122222 445666443 2
Q ss_pred cceEEEEECC-CCcEEEeecCCCCCCC-CcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCc--EEEeccCCCCC
Q 010551 116 SMIVRFIDLE-TNLCGVMETSGKVPVT-RGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPP 190 (507)
Q Consensus 116 ~~~~~~yd~~-t~~W~~~~~~g~~p~~-r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~~~~~~p 190 (507)
...+..|+.. +++++.+.. .+.+ ...+.+..-++ .+|+. .+. .+.+.+|++.++. ...+.. .+
T Consensus 56 ~~~i~~~~~~~~g~l~~~~~---~~~~~~p~~i~~~~~g~~l~v~-~~~-----~~~v~v~~~~~~g~~~~~~~~---~~ 123 (330)
T PRK11028 56 EFRVLSYRIADDGALTFAAE---SPLPGSPTHISTDHQGRFLFSA-SYN-----ANCVSVSPLDKDGIPVAPIQI---IE 123 (330)
T ss_pred CCcEEEEEECCCCceEEeee---ecCCCCceEEEECCCCCEEEEE-EcC-----CCeEEEEEECCCCCCCCceee---cc
Confidence 2346667665 566765542 1211 11122222234 45554 322 2567888876421 111211 11
Q ss_pred CCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCCC-cEEecc-cCCCCCCCCCccEEEEE--CCeEEEEeccCCC
Q 010551 191 APRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTN-EWSQPE-IKGDLVTGRAGHAGITI--DENWYIVGGGDNN 265 (507)
Q Consensus 191 ~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~-~W~~~~-~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~ 265 (507)
....-|.++... ++++|+..- ..+.+.+||+.+. ...... .....+.....+.++.. +..+|+...
T Consensus 124 ~~~~~~~~~~~p~g~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---- 194 (330)
T PRK11028 124 GLEGCHSANIDPDNRTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---- 194 (330)
T ss_pred CCCcccEeEeCCCCCEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec----
Confidence 122234444443 455666432 2247999998763 222100 00011111112223333 236777633
Q ss_pred CCcceEEEEECC--CCcEEEe---ccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECC
Q 010551 266 NGCQETIVLNMT--KLAWSIL---TSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK 331 (507)
Q Consensus 266 ~~~~~~~~~d~~--~~~W~~v---~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~ 331 (507)
..+.+.+|++. +...+.+ ..+|...+.+ ++.......+++.++|+... ..+.+.+|++.
T Consensus 195 -~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~i~~~pdg~~lyv~~~----~~~~I~v~~i~ 258 (330)
T PRK11028 195 -LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT--RWAADIHITPDGRHLYACDR----TASLISVFSVS 258 (330)
T ss_pred -CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC--ccceeEEECCCCCEEEEecC----CCCeEEEEEEe
Confidence 13456677765 3454433 3332221222 22223334455667887522 23456666653
No 119
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.59 E-value=0.52 Score=42.28 Aligned_cols=10 Identities=30% Similarity=0.152 Sum_probs=3.8
Q ss_pred HhhhhhhhhH
Q 010551 442 AERSRCFKLE 451 (507)
Q Consensus 442 ~~~~~~~~~e 451 (507)
++++.+.+||
T Consensus 109 ql~kyiReLE 118 (333)
T KOG1853|consen 109 QLRKYIRELE 118 (333)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 120
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.57 E-value=0.61 Score=44.90 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=28.2
Q ss_pred hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHH
Q 010551 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
...+++.++.+.+..+..++.+++..+.+++..++++.++++.++..+..+.
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555444443
No 121
>PRK09039 hypothetical protein; Validated
Probab=94.57 E-value=0.44 Score=46.63 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=18.4
Q ss_pred HHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551 418 KIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 460 (507)
Q Consensus 418 ~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~ 460 (507)
.|.+.+....+...+++..++|++.+++.+..++..+...+++
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444444433
No 122
>PRK09039 hypothetical protein; Validated
Probab=94.56 E-value=0.49 Score=46.31 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=16.2
Q ss_pred HHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551 433 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 433 l~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
|...+........++..|+++++.+++|+..++
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334445555566666666655554
No 123
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.55 E-value=4.6 Score=38.71 Aligned_cols=217 Identities=13% Similarity=0.170 Sum_probs=91.8
Q ss_pred CceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEc-cCCceeeeccccccCCCccccCCCcCCCCCc
Q 010551 13 DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL-RSLAWSNLRLETELDADKTEDSGLLEVLPPM 91 (507)
Q Consensus 13 ~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~-~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r 91 (507)
..|.......+.+....-+++...++..||+|.. .+..... .-.+|.+++... +.|-
T Consensus 47 ~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~-------g~ll~T~DgG~tW~~v~l~~---------------~lpg 104 (302)
T PF14870_consen 47 KTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP-------GLLLHTTDGGKTWERVPLSS---------------KLPG 104 (302)
T ss_dssp SS-EE-----S-----EEEEEEEETTEEEEEEET-------TEEEEESSTTSS-EE----T---------------T-SS
T ss_pred ccccccccCCCccceeeEEEEEecCCceEEEcCC-------ceEEEecCCCCCcEEeecCC---------------CCCC
Confidence 4788876422222112233444458889998741 2333333 345899987432 1223
Q ss_pred cceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCCCCccCc
Q 010551 92 SDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRSRKLLND 169 (507)
Q Consensus 92 ~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~n~ 169 (507)
..+.+..+ ++.++++|.. ..+|+=.-.-.+|+.+... ..+ .-..+... ++++++.+.... -
T Consensus 105 s~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~---~~g-s~~~~~r~~dG~~vavs~~G~------~ 167 (302)
T PF14870_consen 105 SPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSE---TSG-SINDITRSSDGRYVAVSSRGN------F 167 (302)
T ss_dssp -EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETTSS------E
T ss_pred CeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccC---Ccc-eeEeEEECCCCcEEEEECccc------E
Confidence 33444444 5667776542 1255554455689987631 111 11122223 456666665432 1
Q ss_pred EEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEE--CCCCcEEecccCCCCCCCCCcc
Q 010551 170 VHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLD--LQTNEWSQPEIKGDLVTGRAGH 247 (507)
Q Consensus 170 ~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d--~~~~~W~~~~~~~~~p~~r~~~ 247 (507)
+...|+....|.... .+..|.-.+|....++.++++. .++ .+..=+ -....|.... .+.+...+++
T Consensus 168 ~~s~~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~--~~~~~~~~~~ 235 (302)
T PF14870_consen 168 YSSWDPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPI--IPIKTNGYGI 235 (302)
T ss_dssp EEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B---TTSS--S-E
T ss_pred EEEecCCCccceEEc----cCccceehhceecCCCCEEEEe-CCc-----EEEEccCCCCcccccccc--CCcccCceee
Confidence 335678888899886 3456777777777777787765 222 233333 2345677742 1222222322
Q ss_pred EEEEE--CCeEEEEeccCCCCCcceEEEEECCCCcEEEecc
Q 010551 248 AGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 286 (507)
Q Consensus 248 ~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~ 286 (507)
--+.+ ++.+++.||.. .+++=.-.-++|++...
T Consensus 236 ld~a~~~~~~~wa~gg~G------~l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 236 LDLAYRPPNEIWAVGGSG------TLLVSTDGGKTWQKDRV 270 (302)
T ss_dssp EEEEESSSS-EEEEESTT-------EEEESSTTSS-EE-GG
T ss_pred EEEEecCCCCEEEEeCCc------cEEEeCCCCccceECcc
Confidence 22233 46788888743 23333345568998754
No 124
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.48 E-value=6.4 Score=40.05 Aligned_cols=189 Identities=9% Similarity=0.002 Sum_probs=96.6
Q ss_pred CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551 53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 131 (507)
..++++|+.++.-+.+..... ........- +++|++.....+ ..++|++|+.++..+.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g-----------------~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~ 281 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG-----------------LNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSR 281 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC-----------------CcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEE
Confidence 479999999887766543211 011111111 345554332221 2469999999998877
Q ss_pred eecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEc
Q 010551 132 METSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG 210 (507)
Q Consensus 132 ~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G 210 (507)
+.. .+. ........-++ .|++....++ ...++.+|+.++.+..+...+ .........-+++.|++..
T Consensus 282 lt~---~~~-~~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 282 VTN---HPA-IDTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVH 349 (430)
T ss_pred ccc---CCC-CcCCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEE
Confidence 642 111 11111112233 5655432221 346999999999888775322 1111112223445555544
Q ss_pred CCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEe
Q 010551 211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 284 (507)
Q Consensus 211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v 284 (507)
..++ ...++++|+.++..+.+.... . .......-+++.+++....+ ....+++++.....=..+
T Consensus 350 ~~~~---~~~l~~~dl~tg~~~~lt~~~---~--~~~p~~spdg~~i~~~~~~~--g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 350 RQDG---NFHVAAQDLQRGSVRILTDTS---L--DESPSVAPNGTMLIYATRQQ--GRGVLMLVSINGRVRLPL 413 (430)
T ss_pred ccCC---ceEEEEEECCCCCEEEccCCC---C--CCCceECCCCCEEEEEEecC--CceEEEEEECCCCceEEC
Confidence 3222 236999999998887764211 1 11112223556666643322 234577777755433334
No 125
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.41 E-value=0.85 Score=43.02 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=31.7
Q ss_pred HHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551 417 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 417 ~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
+++..+..++..+..+|.....++...++.+..|..++..+++++++.-
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~ 254 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLA 254 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555566666666666666667777777777777777666553
No 126
>PRK03629 tolB translocation protein TolB; Provisional
Probab=94.40 E-value=6.7 Score=39.95 Aligned_cols=149 Identities=9% Similarity=0.107 Sum_probs=77.2
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551 117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 195 (507)
Q Consensus 117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~ 195 (507)
..++.+|+.+++-+.+. ..+..... ....-++ +|++....++ ..+++.+|+.+.....+... +. ..
T Consensus 223 ~~i~i~dl~~G~~~~l~---~~~~~~~~-~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~---~~--~~ 289 (429)
T PRK03629 223 SALVIQTLANGAVRQVA---SFPRHNGA-PAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDG---RS--NN 289 (429)
T ss_pred cEEEEEECCCCCeEEcc---CCCCCcCC-eEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCC---CC--Cc
Confidence 46999999988766654 22221111 1122234 5655433222 23599999999887776431 11 11
Q ss_pred ceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEE
Q 010551 196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN 275 (507)
Q Consensus 196 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d 275 (507)
.......++..++|...... ...+|.+|+.++....+...+ .........-+++.+++.+... ...+++++|
T Consensus 290 ~~~~wSPDG~~I~f~s~~~g--~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~--g~~~I~~~d 361 (429)
T PRK03629 290 TEPTWFPDSQNLAYTSDQAG--RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNG--GQQHIAKQD 361 (429)
T ss_pred CceEECCCCCEEEEEeCCCC--CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccC--CCceEEEEE
Confidence 12222334333444332111 247999999887766653211 1111111222444444433222 234689999
Q ss_pred CCCCcEEEecc
Q 010551 276 MTKLAWSILTS 286 (507)
Q Consensus 276 ~~~~~W~~v~~ 286 (507)
+.+..+..+..
T Consensus 362 l~~g~~~~Lt~ 372 (429)
T PRK03629 362 LATGGVQVLTD 372 (429)
T ss_pred CCCCCeEEeCC
Confidence 99998887753
No 127
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.39 E-value=0.47 Score=43.17 Aligned_cols=98 Identities=15% Similarity=0.224 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHh----HH-
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES----SQ- 465 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~----~~- 465 (507)
|+.|......+.....+...+.+.|+.-++..+...++...+...++.+++.+.+.|..++..-+.+...++- +.
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~ 99 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNF 99 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence 3334333333333333334445555555555555555555556666667777766666665544433333222 22
Q ss_pred ------HHHHHHHHHHHhHHHHHHHHHHh
Q 010551 466 ------TIENEVQILRQQKSAFEQEMERA 488 (507)
Q Consensus 466 ------~le~e~~~~~~~~~~~~~~~~~~ 488 (507)
...+.++.+.+++.+...+||..
T Consensus 100 lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 100 LEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344555555555555556543
No 128
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=94.35 E-value=0.25 Score=49.20 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 010551 466 TIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~~~~~ 486 (507)
+|+.++++++.+++++.++|+
T Consensus 120 ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 120 QLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555554
No 129
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.31 E-value=0.3 Score=43.59 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=20.7
Q ss_pred hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
....+...+++++..+.+....+...+.++..++.++.+++..+.++.+-.+.++
T Consensus 96 ~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 96 QLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555555555566666666666655555555444443
No 130
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.13 E-value=0.57 Score=51.17 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=10.8
Q ss_pred HHHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551 434 SSVQGQLVAERSRCFKLEAQIAELQKM 460 (507)
Q Consensus 434 ~~~~~~~~~~~~~~~~~e~~~~e~~~~ 460 (507)
.+.++++..++.+++++|.++..+.++
T Consensus 397 ~e~e~k~~~L~~evek~e~~~~~L~~e 423 (1074)
T KOG0250|consen 397 EERENKLEQLKKEVEKLEEQINSLREE 423 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444433333
No 131
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.13 E-value=0.45 Score=51.90 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHh
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~ 438 (507)
+..++..+++++..+.+......++...+...++.+..++.++.+.+.
T Consensus 677 ~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 677 ILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455666666666666666666666666666666666666665555
No 132
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=94.04 E-value=0.49 Score=45.15 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=26.6
Q ss_pred hhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551 413 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 460 (507)
Q Consensus 413 ~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~ 460 (507)
..|+..|++.-+++.+++++..+.++.++.-++..++.+.+-+....+
T Consensus 288 r~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareak 335 (442)
T PF06637_consen 288 RSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAK 335 (442)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666777776666666666555554444444333333333
No 133
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.03 E-value=0.31 Score=42.84 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=43.6
Q ss_pred HHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH
Q 010551 395 KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 464 (507)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~ 464 (507)
++...++++.+++...++..|...+++++.+.++....+..++.++..+.+...++.-++..++.+..++
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 4444455555566666666666667777777766666666666666666666666665555555554444
No 134
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=93.93 E-value=7.5 Score=38.75 Aligned_cols=188 Identities=11% Similarity=0.116 Sum_probs=99.6
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEE--ECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCC
Q 010551 116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR 193 (507)
Q Consensus 116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~--~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r 193 (507)
+.++|+++...+.-+++..-| |...-++- -++.|++.--.-.+..-...+|..+.+..+...+. .
T Consensus 106 taDly~v~~e~Ge~kRiTyfG-----r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~Ln--------l 172 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYFG-----RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLN--------L 172 (668)
T ss_pred cccEEEEeCCCCcEEEEEEec-----cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeecc--------C
Confidence 557999999999988887554 22221111 24555554433222112334555554444444332 2
Q ss_pred CCceEEEEcCCEEEEEcCCC---------CCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCC
Q 010551 194 YDHSAALHANRYLIVFGGCS---------HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN 264 (507)
Q Consensus 194 ~~~~~~~~~~~~l~v~GG~~---------~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~ 264 (507)
.-.+..++.++ ++|+|-.. .+..-..+|+=......+.++ -+++...+ +-+++++++|.+.-..
T Consensus 173 Gpathiv~~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~---vdl~~~vS--~PmIV~~RvYFlsD~e- 245 (668)
T COG4946 173 GPATHIVIKDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKF---VDLDGNVS--SPMIVGERVYFLSDHE- 245 (668)
T ss_pred CceeeEEEeCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeee---eecCCCcC--CceEEcceEEEEeccc-
Confidence 22345667777 66666432 112334566554444455543 12222211 2256788999885433
Q ss_pred CCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCCCCCCCcc
Q 010551 265 NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKI 340 (507)
Q Consensus 265 ~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~w~~~~~ 340 (507)
....+|.-|++.+--++-.+.....| ++ +..+|...++--|| |+|.||+.+..-++..+
T Consensus 246 --G~GnlYSvdldGkDlrrHTnFtdYY~----R~----~nsDGkrIvFq~~G-------dIylydP~td~lekldI 304 (668)
T COG4946 246 --GVGNLYSVDLDGKDLRRHTNFTDYYP----RN----ANSDGKRIVFQNAG-------DIYLYDPETDSLEKLDI 304 (668)
T ss_pred --CccceEEeccCCchhhhcCCchhccc----cc----cCCCCcEEEEecCC-------cEEEeCCCcCcceeeec
Confidence 34467777877776555555544322 22 23344444444454 78999998877666554
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=93.88 E-value=6.6 Score=38.91 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=24.9
Q ss_pred CcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCC
Q 010551 168 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS 215 (507)
Q Consensus 168 n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 215 (507)
+.+-+||+..+.--.- ...|+.-+++++-.....+.+|+..+.
T Consensus 198 ~t~k~wdlS~g~LLlt-----i~fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 198 RTIKLWDLSLGVLLLT-----ITFPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred ceEEEEEeccceeeEE-----EecCCcceeEEEcccccEEEecCCcce
Confidence 4577788877743211 233555666666555556666776554
No 136
>PRK03629 tolB translocation protein TolB; Provisional
Probab=93.84 E-value=8.6 Score=39.16 Aligned_cols=189 Identities=10% Similarity=0.014 Sum_probs=95.0
Q ss_pred CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551 53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 131 (507)
..++++|+.++.-+.+..... ........- +.+|++.....+ ...+|.+|+.++..+.
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~-----------------~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~ 281 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPR-----------------HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQ 281 (429)
T ss_pred cEEEEEECCCCCeEEccCCCC-----------------CcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEE
Confidence 468899998877655543211 111111122 345655433221 2359999999998777
Q ss_pred eecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEE-cCCEEEEE
Q 010551 132 METSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVF 209 (507)
Q Consensus 132 ~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~ 209 (507)
+.. .+.. .......-++ .|++...... ...+|.+|+.+..-..+...+. . ....... +++.|++.
T Consensus 282 lt~---~~~~-~~~~~wSPDG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~~~----~-~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 282 VTD---GRSN-NTEPTWFPDSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWEGS----Q-NQDADVSSDGKFMVMV 348 (429)
T ss_pred ccC---CCCC-cCceEECCCCCEEEEEeCCCC----CceEEEEECCCCCeEEeecCCC----C-ccCEEECCCCCEEEEE
Confidence 642 1111 1111112234 4544332221 3479999998887766643211 1 1122222 34444444
Q ss_pred cCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEec
Q 010551 210 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT 285 (507)
Q Consensus 210 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~ 285 (507)
+..++ ...++.+|+.++.+..+.... ........-+++.+++.+..+. ...+++.+.....=..++
T Consensus 349 ~~~~g---~~~I~~~dl~~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~~~--~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 349 SSNGG---QQHIAKQDLATGGVQVLTDTF-----LDETPSIAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARLP 414 (429)
T ss_pred EccCC---CceEEEEECCCCCeEEeCCCC-----CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCCeEECc
Confidence 33222 246999999999888764211 1111122235666666554322 235677777655544444
No 137
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.71 E-value=1.6 Score=41.84 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhh-------hhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHh
Q 010551 391 IDAIKEDKRVLEL-------SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 463 (507)
Q Consensus 391 ~~~l~~~~~~~~~-------~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~ 463 (507)
+.+.+.+|+..+. .+...+++.+..++++.++.+.+.+..+++..+..+.+.++.++..+-.+-+++..+.+.
T Consensus 90 l~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qs 169 (499)
T COG4372 90 LGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQS 169 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445554444 344444444444455555555555555555555555555555554443333333333333
No 138
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=93.71 E-value=2.6 Score=32.78 Aligned_cols=35 Identities=34% Similarity=0.440 Sum_probs=22.7
Q ss_pred HHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHh
Q 010551 429 LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 463 (507)
Q Consensus 429 ~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~ 463 (507)
++-.++..+.+......++.+|+.++.+..+.+..
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666677777777777777666554
No 139
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=93.67 E-value=1.4 Score=41.13 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=24.7
Q ss_pred hhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH
Q 010551 410 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 464 (507)
Q Consensus 410 ~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~ 464 (507)
.+...|..++..++.+++.++...++.+.....+++++.++++++.++++-.+++
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444433333
No 140
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.67 E-value=0.71 Score=43.30 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=13.2
Q ss_pred hhccchhHHHHhhccccccC
Q 010551 348 AAAASVTAAYALAKSEKLDI 367 (507)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~ 367 (507)
+...++.|.|.++...+...
T Consensus 47 ~~iss~gwff~i~~re~qlk 66 (401)
T PF06785_consen 47 SIISSLGWFFAIGRREKQLK 66 (401)
T ss_pred HHHHHhHHHHHhhHHHHHHH
Confidence 44566778888877665543
No 141
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.60 E-value=5.9 Score=36.45 Aligned_cols=143 Identities=12% Similarity=0.073 Sum_probs=66.0
Q ss_pred CEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-C-CEEEEEcCCCCCCCccCcEEEEECCCC
Q 010551 101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLETM 178 (507)
Q Consensus 101 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~iy~~GG~~~~~~~~n~~~~~d~~t~ 178 (507)
+.+++.|+. ...+.+||+.++.-..... .......+..+ . +.+++.|+.+ +.+.+||+.+.
T Consensus 105 ~~~~~~~~~------~~~i~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~ 167 (289)
T cd00200 105 GRILSSSSR------DKTIKVWDVETGKCLTTLR-----GHTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTG 167 (289)
T ss_pred CCEEEEecC------CCeEEEEECCCcEEEEEec-----cCCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEcccc
Confidence 456666552 2348889988665333221 11111222222 2 3444444422 35888998754
Q ss_pred cEE-EeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEEC-CeE
Q 010551 179 TWD-AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID-ENW 256 (507)
Q Consensus 179 ~W~-~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~l 256 (507)
+-. .+.. ....-.++....++..+++++.+ +.+.+||+.+......- . .......++.... +.+
T Consensus 168 ~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~--~--~~~~~i~~~~~~~~~~~ 233 (289)
T cd00200 168 KCVATLTG-----HTGEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTGKCLGTL--R--GHENGVNSVAFSPDGYL 233 (289)
T ss_pred ccceeEec-----CccccceEEECCCcCEEEEecCC-----CcEEEEECCCCceecch--h--hcCCceEEEEEcCCCcE
Confidence 321 2211 11122233334444355555542 46889998775443321 0 1111222333333 345
Q ss_pred EEEeccCCCCCcceEEEEECCCC
Q 010551 257 YIVGGGDNNNGCQETIVLNMTKL 279 (507)
Q Consensus 257 ~v~GG~~~~~~~~~~~~~d~~~~ 279 (507)
++.++.+ ..+.+||+.+.
T Consensus 234 ~~~~~~~-----~~i~i~~~~~~ 251 (289)
T cd00200 234 LASGSED-----GTIRVWDLRTG 251 (289)
T ss_pred EEEEcCC-----CcEEEEEcCCc
Confidence 5554422 24778887754
No 142
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.54 E-value=6.3 Score=36.61 Aligned_cols=177 Identities=12% Similarity=0.011 Sum_probs=92.7
Q ss_pred eCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcC
Q 010551 9 ELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLE 86 (507)
Q Consensus 9 d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~ 86 (507)
|+.+..-++.+.... .+-.+.-.+++ .+.|++.|-.. . --.+||.++.-+..+...
T Consensus 130 dpkt~evt~f~lp~~--~a~~nlet~vfD~~G~lWFt~q~G--~----yGrLdPa~~~i~vfpaPq-------------- 187 (353)
T COG4257 130 DPKTLEVTRFPLPLE--HADANLETAVFDPWGNLWFTGQIG--A----YGRLDPARNVISVFPAPQ-------------- 187 (353)
T ss_pred cCcccceEEeecccc--cCCCcccceeeCCCccEEEeeccc--c----ceecCcccCceeeeccCC--------------
Confidence 444666666664222 23333444444 45677766311 0 116777777666555422
Q ss_pred CCCCccceeE-EEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEE-EEE--CCEEEEEcCCCC
Q 010551 87 VLPPMSDHCM-VKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSV-TLV--GSRLIIFGGEDR 162 (507)
Q Consensus 87 ~p~~r~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~-~~~--~~~iy~~GG~~~ 162 (507)
.-.-+++ +.-++.+|+..= .-+.+-..|+.++.=+.+. .|.+...-+- +.. -+++++-
T Consensus 188 ---G~gpyGi~atpdGsvwyasl------agnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~wit----- 249 (353)
T COG4257 188 ---GGGPYGICATPDGSVWYASL------AGNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWIT----- 249 (353)
T ss_pred ---CCCCcceEECCCCcEEEEec------cccceEEcccccCCcceec----CCCcccccccccccCccCcEEEe-----
Confidence 2222333 344777877521 1233667777777544443 3333211111 111 1345553
Q ss_pred CCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEec
Q 010551 163 SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP 234 (507)
Q Consensus 163 ~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~ 234 (507)
..-...+++||+.+..|.+....+.- +|- .++-+-..+.+++ .....+.|.+||+.+.+++.+
T Consensus 250 -twg~g~l~rfdPs~~sW~eypLPgs~--arp-ys~rVD~~grVW~-----sea~agai~rfdpeta~ftv~ 312 (353)
T COG4257 250 -TWGTGSLHRFDPSVTSWIEYPLPGSK--ARP-YSMRVDRHGRVWL-----SEADAGAIGRFDPETARFTVL 312 (353)
T ss_pred -ccCCceeeEeCcccccceeeeCCCCC--CCc-ceeeeccCCcEEe-----eccccCceeecCcccceEEEe
Confidence 11245699999999999998753322 222 2333333343444 223356899999999999986
No 143
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.38 E-value=0.5 Score=46.54 Aligned_cols=66 Identities=18% Similarity=0.294 Sum_probs=29.9
Q ss_pred HHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551 400 VLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
.++..+.+....+...+++.+.++.++.+.++++..++.++-+....+.++++.+.++...+..++
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 333333333333444444444444444444444444444444444444444544444444444443
No 144
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.36 E-value=0.85 Score=52.79 Aligned_cols=57 Identities=14% Similarity=0.292 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhh
Q 010551 390 DIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSR 446 (507)
Q Consensus 390 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~ 446 (507)
..+.|+.+...++..+.......+++++.+......+++..+++...+.+++..+..
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQD 657 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 345555555555555555555555555555555555555554444444444444333
No 145
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.34 E-value=1.1 Score=41.54 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=4.4
Q ss_pred HHHHHHHHhHH
Q 010551 469 NEVQILRQQKS 479 (507)
Q Consensus 469 ~e~~~~~~~~~ 479 (507)
++..++++++.
T Consensus 103 ~Ea~~lq~el~ 113 (246)
T PF00769_consen 103 EEAEELQEELE 113 (246)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 146
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.27 E-value=2.7 Score=34.88 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=9.9
Q ss_pred HHHHHhhHHHhhhhhhhhHHHHHH
Q 010551 433 LSSVQGQLVAERSRCFKLEAQIAE 456 (507)
Q Consensus 433 l~~~~~~~~~~~~~~~~~e~~~~e 456 (507)
|..++.+++..+..+..++.....
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~ 84 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAES 84 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333
No 147
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=93.25 E-value=1.5 Score=43.11 Aligned_cols=47 Identities=21% Similarity=0.407 Sum_probs=31.4
Q ss_pred ccchhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHH
Q 010551 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSK 431 (507)
Q Consensus 385 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~ 431 (507)
++.+..+++++.-+..++..+...+.+..+|...+......++..|+
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk 262 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREK 262 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666788888888888777777777777666665555555444433
No 148
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.24 E-value=0.7 Score=46.87 Aligned_cols=48 Identities=21% Similarity=0.391 Sum_probs=21.7
Q ss_pred hHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHH
Q 010551 415 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 415 l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
++..+..++...+.+++.+..+..+.+...++++.++++..+++.++.
T Consensus 278 ~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 278 FQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444555555555444433
No 149
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.20 E-value=0.9 Score=49.95 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhcccccCCC
Q 010551 466 TIENEVQILRQQKSAFEQEMERATSVQTQGSG 497 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~~~~~~~~~~~~q~~~ 497 (507)
+.+.++.++.+.++..++++++......+.+.
T Consensus 444 ~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~ 475 (1293)
T KOG0996|consen 444 KCQTEIEQLEELLEKEERELDEILDSLKQETE 475 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 55556666666666666666665555444443
No 150
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.13 E-value=6.3 Score=39.86 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=78.6
Q ss_pred cceEEEEECCCC-----cEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc---EEEeccCC
Q 010551 116 SMIVRFIDLETN-----LCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT---WDAVEVTQ 187 (507)
Q Consensus 116 ~~~~~~yd~~t~-----~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~---W~~~~~~~ 187 (507)
.+.++.+++... .|..+.+ +..-..+.+...++.+|+....+.. ...+..+++.+.. |..+-+
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~----~~~~~~~~v~~~~~~~yi~Tn~~a~---~~~l~~~~l~~~~~~~~~~~l~-- 321 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSP----REDGVEYYVDHHGDRLYILTNDDAP---NGRLVAVDLADPSPAEWWTVLI-- 321 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEE----SSSS-EEEEEEETTEEEEEE-TT-T---T-EEEEEETTSTSGGGEEEEEE--
T ss_pred CCeEEEEeccccCCCcCCcEEEeC----CCCceEEEEEccCCEEEEeeCCCCC---CcEEEEecccccccccceeEEc--
Confidence 478999999875 7888863 2222334455568899988775433 3468888887765 764322
Q ss_pred CCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE----CCeEEE-Eecc
Q 010551 188 TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI----DENWYI-VGGG 262 (507)
Q Consensus 188 ~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~----~~~l~v-~GG~ 262 (507)
.+.....-..+...+++|++..=.+ ....|.++++. ..|.... .|.+-.+...... .+.+++ +.+.
T Consensus 322 -~~~~~~~l~~~~~~~~~Lvl~~~~~---~~~~l~v~~~~-~~~~~~~----~~~p~~g~v~~~~~~~~~~~~~~~~ss~ 392 (414)
T PF02897_consen 322 -PEDEDVSLEDVSLFKDYLVLSYREN---GSSRLRVYDLD-DGKESRE----IPLPEAGSVSGVSGDFDSDELRFSYSSF 392 (414)
T ss_dssp ---SSSEEEEEEEEETTEEEEEEEET---TEEEEEEEETT--TEEEEE----EESSSSSEEEEEES-TT-SEEEEEEEET
T ss_pred -CCCCceeEEEEEEECCEEEEEEEEC---CccEEEEEECC-CCcEEee----ecCCcceEEeccCCCCCCCEEEEEEeCC
Confidence 1112112222333466676653322 23578999988 2333321 1222222211222 234443 3332
Q ss_pred CCCCCcceEEEEECCCCcEEEe
Q 010551 263 DNNNGCQETIVLNMTKLAWSIL 284 (507)
Q Consensus 263 ~~~~~~~~~~~~d~~~~~W~~v 284 (507)
. .-..+|.||+.+++.+.+
T Consensus 393 ~---~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 393 T---TPPTVYRYDLATGELTLL 411 (414)
T ss_dssp T---EEEEEEEEETTTTCEEEE
T ss_pred C---CCCEEEEEECCCCCEEEE
Confidence 2 234689999999987665
No 151
>PRK02889 tolB translocation protein TolB; Provisional
Probab=93.00 E-value=12 Score=38.17 Aligned_cols=183 Identities=9% Similarity=-0.004 Sum_probs=90.2
Q ss_pred CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551 53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 131 (507)
..++++|+.++.=..+.... .........- +++|++...... ..++|.+|+.++..+.
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~-----------------g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~ 278 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFK-----------------GSNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRR 278 (427)
T ss_pred cEEEEEECCCCCEEEeecCC-----------------CCccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEE
Confidence 46999999887654443221 1111111222 345554433222 3569999998887666
Q ss_pred eecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEE-EcCCEEEEE
Q 010551 132 METSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL-HANRYLIVF 209 (507)
Q Consensus 132 ~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~~l~v~ 209 (507)
+.. .+ .........-++ +|++.....+ ...+|.+|..+.....+...+. ....... -+++.|++.
T Consensus 279 lt~---~~-~~~~~~~wSpDG~~l~f~s~~~g----~~~Iy~~~~~~g~~~~lt~~g~-----~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 279 LTQ---SS-GIDTEPFFSPDGRSIYFTSDRGG----APQIYRMPASGGAAQRVTFTGS-----YNTSPRISPDGKLLAYI 345 (427)
T ss_pred CCC---CC-CCCcCeEEcCCCCEEEEEecCCC----CcEEEEEECCCCceEEEecCCC-----CcCceEECCCCCEEEEE
Confidence 532 11 111111222244 5544332211 3468999988887777753221 1112222 234545544
Q ss_pred cCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCC
Q 010551 210 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL 279 (507)
Q Consensus 210 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~ 279 (507)
...++ ...++++|+.++....+..... .......-+++.+++....+ ....+++++....
T Consensus 346 s~~~g---~~~I~v~d~~~g~~~~lt~~~~-----~~~p~~spdg~~l~~~~~~~--g~~~l~~~~~~g~ 405 (427)
T PRK02889 346 SRVGG---AFKLYVQDLATGQVTALTDTTR-----DESPSFAPNGRYILYATQQG--GRSVLAAVSSDGR 405 (427)
T ss_pred EccCC---cEEEEEEECCCCCeEEccCCCC-----ccCceECCCCCEEEEEEecC--CCEEEEEEECCCC
Confidence 33222 1369999999888776632111 11112222555665544322 2345777777543
No 152
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.90 E-value=1.1 Score=49.12 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 010551 392 DAIKEDKRV 400 (507)
Q Consensus 392 ~~l~~~~~~ 400 (507)
+.|++++++
T Consensus 523 ~~l~~~~~~ 531 (782)
T PRK00409 523 ASLEELERE 531 (782)
T ss_pred HHHHHHHHH
Confidence 333333333
No 153
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=92.88 E-value=1.7 Score=43.80 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=33.0
Q ss_pred hhhhhhhHHHHHH-HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccc-cCCCceee
Q 010551 444 RSRCFKLEAQIAE-LQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQT-QGSGGVWR 501 (507)
Q Consensus 444 ~~~~~~~e~~~~e-~~~~~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~-q~~~g~~~ 501 (507)
++..+++++++++ ..+..++...+.+++..++...+++.++...++.... .+.+|.||
T Consensus 138 ~~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktrG~wG 197 (448)
T COG1322 138 REVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKTRGNWG 197 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHH
Confidence 3334444444444 4444444456666666666666666666544433322 78899997
No 154
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=92.88 E-value=0.57 Score=45.44 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=11.6
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 010551 469 NEVQILRQQKSAFEQEME 486 (507)
Q Consensus 469 ~e~~~~~~~~~~~~~~~~ 486 (507)
||+++++.+++..|++++
T Consensus 309 kelE~lR~~L~kAEkele 326 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKELE 326 (575)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666666665
No 155
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.85 E-value=0.85 Score=48.53 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhh
Q 010551 389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL 450 (507)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~ 450 (507)
..+..++.+.+.....+...+.+..+|.....++....+..+.+....+.++...+.|+..+
T Consensus 34 ~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rl 95 (717)
T PF09730_consen 34 QRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARL 95 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555655655566666666666666666666666666555555555555554444433
No 156
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.85 E-value=8 Score=35.92 Aligned_cols=221 Identities=14% Similarity=0.086 Sum_probs=115.1
Q ss_pred EeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCc
Q 010551 7 HLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL 85 (507)
Q Consensus 7 ~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~ 85 (507)
++||.+.+=.+.| ++..-..|.+++- ++..+|.-+ ...+-.+|+.+..-+..+...+.
T Consensus 87 hLdP~tGev~~yp----Lg~Ga~Phgiv~gpdg~~Witd~------~~aI~R~dpkt~evt~f~lp~~~----------- 145 (353)
T COG4257 87 HLDPATGEVETYP----LGSGASPHGIVVGPDGSAWITDT------GLAIGRLDPKTLEVTRFPLPLEH----------- 145 (353)
T ss_pred ecCCCCCceEEEe----cCCCCCCceEEECCCCCeeEecC------cceeEEecCcccceEEeeccccc-----------
Confidence 5677777777665 5555566666554 344444432 12588899988877776654321
Q ss_pred CCCCCccceeEEEEC--CEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEE-EEECCEEEEEcCCCC
Q 010551 86 EVLPPMSDHCMVKWG--TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSV-TLVGSRLIIFGGEDR 162 (507)
Q Consensus 86 ~~p~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~-~~~~~~iy~~GG~~~ 162 (507)
+-.+--..+++ ++|+..|-..... .+|+.++.-+.. +.|.+-.-+.+ +.-++.+|+.-=
T Consensus 146 ----a~~nlet~vfD~~G~lWFt~q~G~yG-------rLdPa~~~i~vf----paPqG~gpyGi~atpdGsvwyasl--- 207 (353)
T COG4257 146 ----ADANLETAVFDPWGNLWFTGQIGAYG-------RLDPARNVISVF----PAPQGGGPYGICATPDGSVWYASL--- 207 (353)
T ss_pred ----CCCcccceeeCCCccEEEeeccccce-------ecCcccCceeee----ccCCCCCCcceEECCCCcEEEEec---
Confidence 12222233443 5566655322111 455555554443 23333333333 334677776421
Q ss_pred CCCccCcEEEEECCCCcEEEeccCCCCCCC-CCCceEE-EEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCC
Q 010551 163 SRKLLNDVHFLDLETMTWDAVEVTQTPPAP-RYDHSAA-LHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL 240 (507)
Q Consensus 163 ~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~-r~~~~~~-~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~ 240 (507)
.-|-+-+.|+.+..=+.+.. |.+ ..+..-+ +-..+.+.+. ......+++||+++.+|......+..
T Consensus 208 ---agnaiaridp~~~~aev~p~----P~~~~~gsRriwsdpig~~wit-----twg~g~l~rfdPs~~sW~eypLPgs~ 275 (353)
T COG4257 208 ---AGNAIARIDPFAGHAEVVPQ----PNALKAGSRRIWSDPIGRAWIT-----TWGTGSLHRFDPSVTSWIEYPLPGSK 275 (353)
T ss_pred ---cccceEEcccccCCcceecC----CCcccccccccccCccCcEEEe-----ccCCceeeEeCcccccceeeeCCCCC
Confidence 12457778887775555543 222 1111111 1112335553 11224699999999999985322222
Q ss_pred CCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECCCCcEEEecc
Q 010551 241 VTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 286 (507)
Q Consensus 241 p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~ 286 (507)
+ |-+ ++-+- .+++++- .-..+.+..||+.+.+++.++.
T Consensus 276 a--rpy-s~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 276 A--RPY-SMRVDRHGRVWLS-----EADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred C--Ccc-eeeeccCCcEEee-----ccccCceeecCcccceEEEecC
Confidence 2 222 22222 3455543 2234568899999999888753
No 157
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=92.83 E-value=1.1 Score=43.47 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHhH
Q 010551 451 EAQIAELQKMLESS 464 (507)
Q Consensus 451 e~~~~e~~~~~~~~ 464 (507)
+.++..++..+...
T Consensus 259 ~~EveRlrt~l~~A 272 (552)
T KOG2129|consen 259 QAEVERLRTYLSRA 272 (552)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 158
>PRK04043 tolB translocation protein TolB; Provisional
Probab=92.69 E-value=13 Score=37.78 Aligned_cols=183 Identities=10% Similarity=0.059 Sum_probs=97.0
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCc
Q 010551 118 IVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 196 (507)
Q Consensus 118 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~ 196 (507)
.+|++|+.+++=+.+.. .+ +........-++ +|++.-..++ ..++|.+|+.+..++.+... +. ...
T Consensus 214 ~Iyv~dl~tg~~~~lt~---~~-g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~---~~--~d~ 280 (419)
T PRK04043 214 TLYKYNLYTGKKEKIAS---SQ-GMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNY---PG--IDV 280 (419)
T ss_pred EEEEEECCCCcEEEEec---CC-CcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccC---CC--ccC
Confidence 69999999987666652 11 111111122244 5655443322 35799999999999888532 11 111
Q ss_pred eEEE-EcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECC-eEEEEeccCCCC---CcceE
Q 010551 197 SAAL-HANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE-NWYIVGGGDNNN---GCQET 271 (507)
Q Consensus 197 ~~~~-~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~l~v~GG~~~~~---~~~~~ 271 (507)
.... -+++.|++.....+ ..++|++|+.++..+.+...+. ... ...-++ .++......... ...++
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I 351 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRETNNEFGKNTFNL 351 (419)
T ss_pred ccEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCCCcccCCCCcEE
Confidence 1222 23455666543322 2589999999998877643221 122 222234 444433222111 23589
Q ss_pred EEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551 272 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 333 (507)
Q Consensus 272 ~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 333 (507)
+++|+.+..++.|..... ... ....+++..|+..... .....++.+++..+
T Consensus 352 ~v~d~~~g~~~~LT~~~~-------~~~--p~~SPDG~~I~f~~~~--~~~~~L~~~~l~g~ 402 (419)
T PRK04043 352 YLISTNSDYIRRLTANGV-------NQF--PRFSSDGGSIMFIKYL--GNQSALGIIRLNYN 402 (419)
T ss_pred EEEECCCCCeEECCCCCC-------cCC--eEECCCCCEEEEEEcc--CCcEEEEEEecCCC
Confidence 999999999888765311 111 1122333334333322 22456888887654
No 159
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.63 E-value=0.97 Score=53.37 Aligned_cols=13 Identities=8% Similarity=0.023 Sum_probs=5.0
Q ss_pred CCeEeeCCCCceE
Q 010551 4 GSWHLELPYDLWV 16 (507)
Q Consensus 4 ~~~~~d~~~~~W~ 16 (507)
|.||.-+...+|.
T Consensus 116 GLFcVviNPyk~l 128 (1930)
T KOG0161|consen 116 GLFCVVINPYKRL 128 (1930)
T ss_pred cceeEEecCCcCC
Confidence 3444333333333
No 160
>PRK13684 Ycf48-like protein; Provisional
Probab=92.60 E-value=11 Score=36.89 Aligned_cols=156 Identities=9% Similarity=0.045 Sum_probs=74.4
Q ss_pred EEEEC-CEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEE-
Q 010551 96 MVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL- 173 (507)
Q Consensus 96 ~~~~~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~- 173 (507)
+..++ +.+|+.|... .+++-+-.-.+|+.+.. +..-..+.+....+..++..|..+ .++.-
T Consensus 137 i~~~~~~~~~~~g~~G-------~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G------~i~~s~ 199 (334)
T PRK13684 137 ITALGPGTAEMATNVG-------AIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG------NFYSTW 199 (334)
T ss_pred EEEECCCcceeeeccc-------eEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc------eEEEEc
Confidence 44443 4466655321 24444334568998752 222222333333343344433221 23332
Q ss_pred ECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEE-C-CCCcEEecccCCCCCCCCCccEEEE
Q 010551 174 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLD-L-QTNEWSQPEIKGDLVTGRAGHAGIT 251 (507)
Q Consensus 174 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d-~-~~~~W~~~~~~~~~p~~r~~~~~~~ 251 (507)
|....+|+.+.. +..+..++++...++.++++|..+ ..++. . .-.+|+.+.. +........++++.
T Consensus 200 ~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~ 267 (334)
T PRK13684 200 EPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPII-PEITNGYGYLDLAY 267 (334)
T ss_pred CCCCCeEEEeeC----CCcccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCccccccC-CccccccceeeEEE
Confidence 334457998853 344555666666667788887643 12332 2 2247987521 11101122233333
Q ss_pred E-CCeEEEEeccCCCCCcceEEEEECCCCcEEEecc
Q 010551 252 I-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 286 (507)
Q Consensus 252 ~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~ 286 (507)
. ++.++++|... -++.-.....+|+.+..
T Consensus 268 ~~~~~~~~~G~~G------~v~~S~d~G~tW~~~~~ 297 (334)
T PRK13684 268 RTPGEIWAGGGNG------TLLVSKDGGKTWEKDPV 297 (334)
T ss_pred cCCCCEEEEcCCC------eEEEeCCCCCCCeECCc
Confidence 3 45777776521 13333334568998753
No 161
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.60 E-value=1.6 Score=40.88 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=11.8
Q ss_pred hHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH
Q 010551 432 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 464 (507)
Q Consensus 432 el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~ 464 (507)
|++..+..++.+++.+..+++++.++++++..+
T Consensus 64 e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 64 EIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 162
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=92.56 E-value=1.5 Score=48.98 Aligned_cols=6 Identities=67% Similarity=0.844 Sum_probs=2.5
Q ss_pred CEEEEE
Q 010551 101 TKLLIL 106 (507)
Q Consensus 101 ~~lyv~ 106 (507)
+.+|++
T Consensus 87 ~~lyIV 92 (1021)
T PTZ00266 87 QKLYIL 92 (1021)
T ss_pred CEEEEE
Confidence 344443
No 163
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=92.50 E-value=2.5 Score=37.34 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=32.4
Q ss_pred hhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH
Q 010551 410 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 464 (507)
Q Consensus 410 ~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~ 464 (507)
.....++..+.....+++.-+.+++....+.+.+++++..++.++.+++..+...
T Consensus 52 ~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 52 SQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 3444444444444455555556666666666666677777777777666665553
No 164
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=92.49 E-value=1.5 Score=32.40 Aligned_cols=69 Identities=17% Similarity=0.340 Sum_probs=37.2
Q ss_pred hHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010551 405 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 479 (507)
Q Consensus 405 ~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~ 479 (507)
+...+.+...+.+++...+....+.+..+...-++++..+..+.+||.....+++ +-|+|+.++..+++
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~------~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ------QYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 3344445555555555555555666666666666666666666666655544333 23444444444443
No 165
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=92.47 E-value=2.7 Score=40.39 Aligned_cols=21 Identities=5% Similarity=0.286 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 010551 466 TIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~~~~~ 486 (507)
.|.|++++..++++++..++.
T Consensus 360 ~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 360 SLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555566665555555555543
No 166
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=92.44 E-value=1.1 Score=39.42 Aligned_cols=57 Identities=25% Similarity=0.330 Sum_probs=36.3
Q ss_pred HhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHH
Q 010551 431 KELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 431 ~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~~~~ 487 (507)
..|...-..++.++.++..|.+...-+++++.+.. .|..+++.+..+...+.++++.
T Consensus 60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ 120 (182)
T PF15035_consen 60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQ 120 (182)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777788887777666766666664 5555666655555555555543
No 167
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.40 E-value=1.4 Score=32.11 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=13.5
Q ss_pred HHhhhhhhHHHHHHhhccchhHHHhHHHH
Q 010551 408 VRTENSRFREKIDEVNSTHSELSKELSSV 436 (507)
Q Consensus 408 ~~~~~~~l~~~l~~~~~~~~e~~~el~~~ 436 (507)
.-..+.-|+.++++++.++..+.++.+..
T Consensus 16 AvdtI~LLqmEieELKekn~~L~~e~~~~ 44 (79)
T PRK15422 16 AIDTITLLQMEIEELKEKNNSLSQEVQNA 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555554444444443
No 168
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.39 E-value=0.97 Score=41.81 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=7.2
Q ss_pred HHHHHHhHHHHHHHHHH
Q 010551 471 VQILRQQKSAFEQEMER 487 (507)
Q Consensus 471 ~~~~~~~~~~~~~~~~~ 487 (507)
.....+++..++..+++
T Consensus 115 ~~E~~rkl~~~E~~Le~ 131 (237)
T PF00261_consen 115 YEEVERKLKVLEQELER 131 (237)
T ss_dssp HHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 169
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=92.39 E-value=0.99 Score=45.10 Aligned_cols=23 Identities=9% Similarity=0.387 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 010551 466 TIENEVQILRQQKSAFEQEMERA 488 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~~~~~~~ 488 (507)
+++++.++++++++++...++++
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 170
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=92.33 E-value=4.5 Score=33.26 Aligned_cols=87 Identities=14% Similarity=0.178 Sum_probs=57.3
Q ss_pred EEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEE-EC
Q 010551 97 VKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL-DL 175 (507)
Q Consensus 97 ~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~-d~ 175 (507)
+.++|-||..+-. .......+..||+.+.+|+.+..............++.++++|-++.-........=++|++ |.
T Consensus 2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred EEECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 4568888887766 22235679999999999998863211234445566777888887765543322123468888 56
Q ss_pred CCCcEEEecc
Q 010551 176 ETMTWDAVEV 185 (507)
Q Consensus 176 ~t~~W~~~~~ 185 (507)
....|.....
T Consensus 80 ~k~~Wsk~~~ 89 (129)
T PF08268_consen 80 EKQEWSKKHI 89 (129)
T ss_pred ccceEEEEEE
Confidence 6788997754
No 171
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=92.27 E-value=1.3 Score=51.66 Aligned_cols=6 Identities=17% Similarity=0.158 Sum_probs=2.2
Q ss_pred EEEEcC
Q 010551 40 LYIVGG 45 (507)
Q Consensus 40 iyi~GG 45 (507)
+.++-|
T Consensus 25 ~~~i~G 30 (1179)
T TIGR02168 25 ITGIVG 30 (1179)
T ss_pred cEEEEC
Confidence 333333
No 172
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=92.26 E-value=9.7 Score=35.45 Aligned_cols=155 Identities=15% Similarity=0.075 Sum_probs=86.8
Q ss_pred CCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEE-Ee--ecCCC---CCCCCcCc---EEEEECCEEEEEc
Q 010551 88 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCG-VM--ETSGK---VPVTRGGH---SVTLVGSRLIIFG 158 (507)
Q Consensus 88 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~--~~~g~---~p~~r~~~---~~~~~~~~iy~~G 158 (507)
|-+-.|.+.++.++.+|.--. .++.+..||+.+++-. .. +..+. .|-...++ -.++-.+-|+++-
T Consensus 66 p~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIY 139 (250)
T PF02191_consen 66 PYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIY 139 (250)
T ss_pred eceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEE
Confidence 345677788888999988644 2667999999999765 32 21111 11111122 2233344566664
Q ss_pred CCCCCCCccCcEEEEECCCC----cEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEec
Q 010551 159 GEDRSRKLLNDVHFLDLETM----TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP 234 (507)
Q Consensus 159 G~~~~~~~~n~~~~~d~~t~----~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~ 234 (507)
....+.. .-.+-.+|+.+. +|..- .+.+..+.+.++. + .||++...+... ..=.+.||+.+++=..+
T Consensus 140 at~~~~g-~ivvskld~~tL~v~~tw~T~-----~~k~~~~naFmvC-G-vLY~~~s~~~~~-~~I~yafDt~t~~~~~~ 210 (250)
T PF02191_consen 140 ATEDNNG-NIVVSKLDPETLSVEQTWNTS-----YPKRSAGNAFMVC-G-VLYATDSYDTRD-TEIFYAFDTYTGKEEDV 210 (250)
T ss_pred ecCCCCC-cEEEEeeCcccCceEEEEEec-----cCchhhcceeeEe-e-EEEEEEECCCCC-cEEEEEEECCCCceece
Confidence 4433221 123566777765 45432 3444444444333 3 388876654332 33467899998877655
Q ss_pred ccCCCCCCCCCccEEEEEC---CeEEEE
Q 010551 235 EIKGDLVTGRAGHAGITID---ENWYIV 259 (507)
Q Consensus 235 ~~~~~~p~~r~~~~~~~~~---~~l~v~ 259 (507)
. -+.+.+-..+++..++ .+||+.
T Consensus 211 ~--i~f~~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 211 S--IPFPNPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred e--eeeccccCceEeeeECCCCCeEEEE
Confidence 3 2344444456666665 478887
No 173
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=92.24 E-value=4.2 Score=33.49 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=53.0
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCC-CCcceEEEEE-CCCCc
Q 010551 203 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN-NGCQETIVLN-MTKLA 280 (507)
Q Consensus 203 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~d-~~~~~ 280 (507)
|+.+|-..-. .....+.|..||+.+.+|+.+..............++.++++|.++.-.... ...-++|+++ ..+..
T Consensus 5 nGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~ 83 (129)
T PF08268_consen 5 NGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQE 83 (129)
T ss_pred CcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccce
Confidence 4434443332 3344567999999999999875421233445666788889998887543332 2356899884 56678
Q ss_pred EEEec
Q 010551 281 WSILT 285 (507)
Q Consensus 281 W~~v~ 285 (507)
|.+..
T Consensus 84 Wsk~~ 88 (129)
T PF08268_consen 84 WSKKH 88 (129)
T ss_pred EEEEE
Confidence 99763
No 174
>PRK13684 Ycf48-like protein; Provisional
Probab=92.19 E-value=12 Score=36.53 Aligned_cols=197 Identities=9% Similarity=0.054 Sum_probs=92.1
Q ss_pred CceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCc
Q 010551 13 DLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM 91 (507)
Q Consensus 13 ~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r 91 (507)
..|+.+...-..|. .......+ ++.+|+.|.. ..++.-+=.-.+|..+.... .-
T Consensus 119 ~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~~------G~i~~S~DgG~tW~~~~~~~-----------------~g 173 (334)
T PRK13684 119 KNWTRIPLSEKLPG--SPYLITALGPGTAEMATNV------GAIYRTTDGGKNWEALVEDA-----------------AG 173 (334)
T ss_pred CCCeEccCCcCCCC--CceEEEEECCCcceeeecc------ceEEEECCCCCCceeCcCCC-----------------cc
Confidence 38888863111221 22223333 4456666531 23444333445898876422 12
Q ss_pred cceeEEEECCEEEEEeccCCCCCCcceEEEE-ECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCCCCccCc
Q 010551 92 SDHCMVKWGTKLLILGGHYKKSSDSMIVRFI-DLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRSRKLLND 169 (507)
Q Consensus 92 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~y-d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~n~ 169 (507)
.-+.+....+..|++.|... .++.- +....+|+.+. .+..+.-++++.. ++.++++|...
T Consensus 174 ~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~----~~~~~~l~~i~~~~~g~~~~vg~~G-------- 235 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQ----RNSSRRLQSMGFQPDGNLWMLARGG-------- 235 (334)
T ss_pred eEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEee----CCCcccceeeeEcCCCCEEEEecCC--------
Confidence 23344444444444444332 13332 33445798875 2333444444443 56788876532
Q ss_pred EEEEE-CC-CCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCcc
Q 010551 170 VHFLD-LE-TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH 247 (507)
Q Consensus 170 ~~~~d-~~-t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~ 247 (507)
...+. .+ -..|+.+... ........++++...++.+++.|..+ .++.-.-.-.+|+.+...... +...+
T Consensus 236 ~~~~~s~d~G~sW~~~~~~-~~~~~~~l~~v~~~~~~~~~~~G~~G------~v~~S~d~G~tW~~~~~~~~~--~~~~~ 306 (334)
T PRK13684 236 QIRFNDPDDLESWSKPIIP-EITNGYGYLDLAYRTPGEIWAGGGNG------TLLVSKDGGKTWEKDPVGEEV--PSNFY 306 (334)
T ss_pred EEEEccCCCCCccccccCC-ccccccceeeEEEcCCCCEEEEcCCC------eEEEeCCCCCCCeECCcCCCC--CcceE
Confidence 23342 22 3479876431 00011222334444466688877642 233322234589886321222 22344
Q ss_pred EEEEE-CCeEEEEec
Q 010551 248 AGITI-DENWYIVGG 261 (507)
Q Consensus 248 ~~~~~-~~~l~v~GG 261 (507)
.++.. +++.|++|.
T Consensus 307 ~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 307 KIVFLDPEKGFVLGQ 321 (334)
T ss_pred EEEEeCCCceEEECC
Confidence 44544 567777764
No 175
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.16 E-value=2.7 Score=33.98 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=4.8
Q ss_pred hhHHHHHHHHHH
Q 010551 449 KLEAQIAELQKM 460 (507)
Q Consensus 449 ~~e~~~~e~~~~ 460 (507)
+++.++++++++
T Consensus 72 ~L~~el~~l~~r 83 (120)
T PF12325_consen 72 ELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 176
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=92.15 E-value=4.3 Score=35.36 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=22.8
Q ss_pred HHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551 419 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 419 l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
-++..+..++.-+.|-.+..+++...++.+--+.++.++.++++.+.
T Consensus 76 aE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~ 122 (205)
T KOG1003|consen 76 AEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILD 122 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33334444444455555555555555554444444445444444443
No 177
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.10 E-value=1.4 Score=48.19 Aligned_cols=8 Identities=25% Similarity=-0.155 Sum_probs=3.2
Q ss_pred CCceeeee
Q 010551 496 SGGVWRWI 503 (507)
Q Consensus 496 ~~g~~~~~ 503 (507)
..|-.-||
T Consensus 626 ~~Gd~V~v 633 (771)
T TIGR01069 626 KIGDKVRI 633 (771)
T ss_pred CCCCEEEE
Confidence 33443343
No 178
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.03 E-value=2.9 Score=40.50 Aligned_cols=66 Identities=26% Similarity=0.415 Sum_probs=29.2
Q ss_pred HHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH--------HHHHHHHHHHHHhHHHHHHH
Q 010551 419 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS--------QTIENEVQILRQQKSAFEQE 484 (507)
Q Consensus 419 l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~--------~~le~e~~~~~~~~~~~~~~ 484 (507)
+.....++.+.+..++..+.++..++.+...|+.++.+++.++... ..++.++.+++.+.+...++
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e 284 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLRE 284 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444332222 24445555555544444433
No 179
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.95 E-value=3.8 Score=35.72 Aligned_cols=36 Identities=14% Similarity=0.311 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccch
Q 010551 392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHS 427 (507)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 427 (507)
..|..+-..+...+.....-.++|...+..+..++.
T Consensus 18 ~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~ 53 (193)
T PF14662_consen 18 QKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLK 53 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334433333333444444444444444433
No 180
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.94 E-value=3.5 Score=39.91 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=9.8
Q ss_pred HHhhHHHhhhhhhhhHHHHHHHHHHHH
Q 010551 436 VQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 436 ~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
.+..++.++.++..++.....++.++.
T Consensus 221 ~r~~~~~l~~el~~l~~~~~~Le~~l~ 247 (312)
T PF00038_consen 221 LRRQIQSLQAELESLRAKNASLERQLR 247 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHhhhhhhccccchhhhhhhHH
Confidence 333333333333333333333333333
No 181
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.92 E-value=2.4 Score=42.96 Aligned_cols=11 Identities=0% Similarity=0.157 Sum_probs=4.0
Q ss_pred HHHhHHHHHHH
Q 010551 474 LRQQKSAFEQE 484 (507)
Q Consensus 474 ~~~~~~~~~~~ 484 (507)
++.++...+.+
T Consensus 251 ~~~~l~~~~~~ 261 (423)
T TIGR01843 251 AQARLAELRER 261 (423)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 182
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.89 E-value=2 Score=45.94 Aligned_cols=33 Identities=15% Similarity=0.363 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhcccccC
Q 010551 463 SSQTIENEVQILRQQKSAFEQEMERATSVQTQG 495 (507)
Q Consensus 463 ~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~q~ 495 (507)
+.+.|+.+++-+.++.+.++-++|=+....+.+
T Consensus 326 RaesLQ~eve~lkEr~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 326 RAESLQQEVEALKERVDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334777777777777777777766544443333
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=91.85 E-value=13 Score=36.10 Aligned_cols=60 Identities=13% Similarity=0.037 Sum_probs=31.6
Q ss_pred CCCCeEeeCCC-CceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEcc-CCceeeec
Q 010551 2 DSGSWHLELPY-DLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLR-SLAWSNLR 69 (507)
Q Consensus 2 ~~~~~~~d~~~-~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~-~~~W~~~~ 69 (507)
|.++.+||+.+ .++..+.. .+..-..+.++.- ++.||+.+. . .+.+..|+.. .+.+..+.
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~---~~~~~~~~~l~~spd~~~lyv~~~-~----~~~i~~~~~~~~g~l~~~~ 74 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQV---VDVPGQVQPMVISPDKRHLYVGVR-P----EFRVLSYRIADDGALTFAA 74 (330)
T ss_pred CCCEEEEEECCCCceeeeeE---EecCCCCccEEECCCCCEEEEEEC-C----CCcEEEEEECCCCceEEee
Confidence 45677788854 57776653 2222222233332 456777543 1 2567778775 45565443
No 184
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.81 E-value=15 Score=36.56 Aligned_cols=140 Identities=14% Similarity=0.131 Sum_probs=71.5
Q ss_pred CCCeEeeCCCCc--eEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCC--ceeeeccccccCCCc
Q 010551 3 SGSWHLELPYDL--WVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSL--AWSNLRLETELDADK 78 (507)
Q Consensus 3 ~~~~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~~~~~~~~ 78 (507)
..++.+|+.+.+ |...... -......-....+++||+-.. ++ .+++||..++ .|..-...
T Consensus 78 G~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~i~~g~~-~g-----~~y~ld~~~G~~~W~~~~~~------- 141 (370)
T COG1520 78 GNIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGKIYVGSW-DG-----KLYALDASTGTLVWSRNVGG------- 141 (370)
T ss_pred CcEEEEeCCCCcEEecccCcC---cceeccCceEEeCCeEEEecc-cc-----eEEEEECCCCcEEEEEecCC-------
Confidence 347788888876 8766531 001111111222566665443 22 6899999655 47553321
Q ss_pred cccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEEECCEEEE
Q 010551 79 TEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTLVGSRLII 156 (507)
Q Consensus 79 ~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~iy~ 156 (507)
. ++..-..+..++.+|+.. ....++.+|..+++ |..-...+ .+....+ +.+..++.+|
T Consensus 142 ---------~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~-~~~~~~~~vy- 201 (370)
T COG1520 142 ---------S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-LSLSIYG-SPAIASGTVY- 201 (370)
T ss_pred ---------C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-ccccccc-CceeecceEE-
Confidence 1 233333444455555543 13458888888774 87554321 1222222 2223334444
Q ss_pred EcCCCCCCCccCcEEEEECCCC--cEEE
Q 010551 157 FGGEDRSRKLLNDVHFLDLETM--TWDA 182 (507)
Q Consensus 157 ~GG~~~~~~~~n~~~~~d~~t~--~W~~ 182 (507)
+|..+ ....++.+|+.++ .|..
T Consensus 202 ~~~~~----~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 202 VGSDG----YDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred EecCC----CcceEEEEEccCCcEeeee
Confidence 44332 1225899999665 5874
No 185
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.77 E-value=2 Score=50.96 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 010551 466 TIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~~~~~~ 487 (507)
+++++...+..+++.+.+++++
T Consensus 1122 K~ek~r~dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1122 KAERQRRDLSEELEELKEELEE 1143 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 186
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.73 E-value=5.2 Score=31.19 Aligned_cols=18 Identities=11% Similarity=0.374 Sum_probs=7.3
Q ss_pred hhhhHHHHHHhhccchhH
Q 010551 412 NSRFREKIDEVNSTHSEL 429 (507)
Q Consensus 412 ~~~l~~~l~~~~~~~~e~ 429 (507)
...|+..|+..+....++
T Consensus 18 La~Le~slE~~K~S~~eL 35 (107)
T PF09304_consen 18 LASLERSLEDEKTSQGEL 35 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 333444444444444443
No 187
>PRK02889 tolB translocation protein TolB; Provisional
Probab=91.68 E-value=17 Score=36.99 Aligned_cols=147 Identities=10% Similarity=0.013 Sum_probs=73.8
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551 117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 195 (507)
Q Consensus 117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~ 195 (507)
..+|++|+.+++=..+. ..+. ........-++ +|++....++ ..++|.+|+.+.....+... . ....
T Consensus 220 ~~I~~~dl~~g~~~~l~---~~~g-~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~~~ 287 (427)
T PRK02889 220 PVVYVHDLATGRRRVVA---NFKG-SNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQS---S-GIDT 287 (427)
T ss_pred cEEEEEECCCCCEEEee---cCCC-CccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCC---C-CCCc
Confidence 45999999988755554 2221 11111122233 5655443332 35799999987776665421 1 1111
Q ss_pred ceEEEE-cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEE
Q 010551 196 HSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 274 (507)
Q Consensus 196 ~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 274 (507)
..... ++..|++....++ ...+|.++..++....+...+. ........-+++.+++....+ ....++++
T Consensus 288 -~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g~----~~~~~~~SpDG~~Ia~~s~~~--g~~~I~v~ 357 (427)
T PRK02889 288 -EPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTGS----YNTSPRISPDGKLLAYISRVG--GAFKLYVQ 357 (427)
T ss_pred -CeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCCC----CcCceEECCCCCEEEEEEccC--CcEEEEEE
Confidence 12223 3344444322211 2478999988877766532111 111111222344444433221 12378999
Q ss_pred ECCCCcEEEec
Q 010551 275 NMTKLAWSILT 285 (507)
Q Consensus 275 d~~~~~W~~v~ 285 (507)
|+.+...+.+.
T Consensus 358 d~~~g~~~~lt 368 (427)
T PRK02889 358 DLATGQVTALT 368 (427)
T ss_pred ECCCCCeEEcc
Confidence 99988877664
No 188
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=91.68 E-value=7.8 Score=39.56 Aligned_cols=75 Identities=13% Similarity=0.230 Sum_probs=41.8
Q ss_pred CCCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEEC--CeEEEEeccCCCC
Q 010551 190 PAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID--ENWYIVGGGDNNN 266 (507)
Q Consensus 190 p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~~l~v~GG~~~~~ 266 (507)
-.|+.+.-++... ...||+.|-. +++|+||+..+.|-.+-.... ..--++.++ +.|+.+||-++
T Consensus 131 RIP~~GRDm~y~~~scDly~~gsg------~evYRlNLEqGrfL~P~~~~~-----~~lN~v~in~~hgLla~Gt~~g-- 197 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGSG------SEVYRLNLEQGRFLNPFETDS-----GELNVVSINEEHGLLACGTEDG-- 197 (703)
T ss_pred ecCcCCccccccCCCccEEEeecC------cceEEEEcccccccccccccc-----ccceeeeecCccceEEecccCc--
Confidence 3455555555543 2336654432 589999999999976522111 112233343 46788877444
Q ss_pred CcceEEEEECCCCc
Q 010551 267 GCQETIVLNMTKLA 280 (507)
Q Consensus 267 ~~~~~~~~d~~~~~ 280 (507)
.+..+|+.+..
T Consensus 198 ---~VEfwDpR~ks 208 (703)
T KOG2321|consen 198 ---VVEFWDPRDKS 208 (703)
T ss_pred ---eEEEecchhhh
Confidence 35566665543
No 189
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.63 E-value=0.64 Score=48.16 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=10.9
Q ss_pred hhhhhhhHHHHHHHHHHHHhHHHHH
Q 010551 444 RSRCFKLEAQIAELQKMLESSQTIE 468 (507)
Q Consensus 444 ~~~~~~~e~~~~e~~~~~~~~~~le 468 (507)
.+++++++.+++++..+|++..+++
T Consensus 162 eer~~kl~~~~qe~naeL~rarqre 186 (916)
T KOG0249|consen 162 EERTRKLEEQLEELNAELQRARQRE 186 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 190
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.58 E-value=2.5 Score=45.73 Aligned_cols=48 Identities=15% Similarity=0.121 Sum_probs=22.6
Q ss_pred hhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551 413 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 460 (507)
Q Consensus 413 ~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~ 460 (507)
..|+.+.+....++.+.+.+++.++..-+.+.+|.+++...++.+.++
T Consensus 568 ~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R 615 (717)
T PF10168_consen 568 KLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKR 615 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555544455555555444444444443
No 191
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=91.54 E-value=1.9 Score=46.05 Aligned_cols=34 Identities=9% Similarity=0.166 Sum_probs=16.4
Q ss_pred HHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHH
Q 010551 429 LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 429 ~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
.++.....+++.++.+++..++.+..+++-+|..
T Consensus 415 ~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~ 448 (980)
T KOG0980|consen 415 AENKALAAENRYEKLKEKYTELRQEHADLLRKYD 448 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555555555555555444433
No 192
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.51 E-value=5.7 Score=34.60 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAEL 457 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~ 457 (507)
+..|..+..-+++.+.........+++++.+.+....+.++....+....++..++...++.++.|-
T Consensus 6 va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEA 72 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEA 72 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4445555555555555555667778888888888888888888888888888888877777666554
No 193
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.51 E-value=1.8 Score=47.73 Aligned_cols=7 Identities=57% Similarity=0.790 Sum_probs=3.9
Q ss_pred EEEEEcC
Q 010551 205 YLIVFGG 211 (507)
Q Consensus 205 ~l~v~GG 211 (507)
.|||||=
T Consensus 128 mLFVFGf 134 (1293)
T KOG0996|consen 128 MLFVFGF 134 (1293)
T ss_pred HHHHhhh
Confidence 3566654
No 194
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.44 E-value=1.7 Score=45.29 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=27.9
Q ss_pred HHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010551 430 SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 479 (507)
Q Consensus 430 ~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~ 479 (507)
...+...+.++...+.++..+++++++.++++......+.+..+++++.+
T Consensus 316 ~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~ 365 (498)
T TIGR03007 316 QIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYE 365 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 34455555555556666666666666666665554444444444444443
No 195
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=91.40 E-value=4.6 Score=36.44 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhh
Q 010551 466 TIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~~~~~~~~ 489 (507)
++++.+.++-++..-++.||.|.+
T Consensus 137 DfeqrLnqAIErnAfLESELdEke 160 (333)
T KOG1853|consen 137 DFEQRLNQAIERNAFLESELDEKE 160 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444555555555556666666544
No 196
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.36 E-value=4.3 Score=38.34 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=7.5
Q ss_pred hHHHHHHhhccchhHHHhH
Q 010551 415 FREKIDEVNSTHSELSKEL 433 (507)
Q Consensus 415 l~~~l~~~~~~~~e~~~el 433 (507)
|.++|..+..+..+++..|
T Consensus 111 L~rkl~qLr~EK~~lE~~L 129 (310)
T PF09755_consen 111 LSRKLNQLRQEKVELENQL 129 (310)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444333333333
No 197
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=91.32 E-value=6.1 Score=33.73 Aligned_cols=40 Identities=30% Similarity=0.420 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELS 430 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~ 430 (507)
+..+...+.++-......+.+...++++|++.+.++.+.-
T Consensus 8 i~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I 47 (159)
T PF05384_consen 8 IDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVI 47 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666666666655555443
No 198
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=91.31 E-value=3.5 Score=44.16 Aligned_cols=11 Identities=9% Similarity=0.296 Sum_probs=5.3
Q ss_pred CcEEEeccCCC
Q 010551 178 MTWDAVEVTQT 188 (507)
Q Consensus 178 ~~W~~~~~~~~ 188 (507)
..|....+.|.
T Consensus 175 ~r~~s~t~qgq 185 (980)
T KOG0980|consen 175 SRWVSLTPQGQ 185 (980)
T ss_pred ccccccCCCcc
Confidence 34655544443
No 199
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.29 E-value=6.7 Score=34.38 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=9.3
Q ss_pred HHHHHHHHhHHHHHHHHHHh
Q 010551 469 NEVQILRQQKSAFEQEMERA 488 (507)
Q Consensus 469 ~e~~~~~~~~~~~~~~~~~~ 488 (507)
.+++.+++.+..+++..+.+
T Consensus 152 ~~~~~l~~~i~~l~rk~~~l 171 (177)
T PF13870_consen 152 EEVEELRKEIKELERKVEIL 171 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555444433
No 200
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.27 E-value=1.6 Score=46.53 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=18.5
Q ss_pred HhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551 421 EVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 460 (507)
Q Consensus 421 ~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~ 460 (507)
++..+++.+..|+.+++...+.+++++...|..+.++++|
T Consensus 400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444555555555554444
No 201
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.26 E-value=0.92 Score=41.87 Aligned_cols=46 Identities=20% Similarity=0.402 Sum_probs=17.8
Q ss_pred hHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551 415 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 460 (507)
Q Consensus 415 l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~ 460 (507)
++.+|+.+..++++...+++..+.++.+.+..+.+++.++.++++.
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444443333333333333333333333333333333333333
No 202
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=91.17 E-value=4 Score=37.71 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 010551 466 TIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~~~~~ 486 (507)
..++.+..+.+++..++.++.
T Consensus 194 ~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 194 FAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 203
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=91.11 E-value=4.5 Score=37.63 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=18.3
Q ss_pred HhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551 421 EVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 421 ~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
....++++.++.+..+..+...+..++++.+++++..+++|+.+|
T Consensus 173 ~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 173 AVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444444444444444444443
No 204
>PRK11546 zraP zinc resistance protein; Provisional
Probab=91.10 E-value=1.6 Score=36.31 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=11.1
Q ss_pred HHHhhccchhHHHhHHHHHhhHHHh
Q 010551 419 IDEVNSTHSELSKELSSVQGQLVAE 443 (507)
Q Consensus 419 l~~~~~~~~e~~~el~~~~~~~~~~ 443 (507)
.++...+.++++++|...+.|+..+
T Consensus 56 ~~~f~~~t~~LRqqL~aKr~ELnAL 80 (143)
T PRK11546 56 HNDFYAQTSALRQQLVSKRYEYNAL 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444
No 205
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.08 E-value=1.6 Score=46.99 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=17.6
Q ss_pred HHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHH
Q 010551 417 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK 459 (507)
Q Consensus 417 ~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~ 459 (507)
.++++++.++.+...+++...++....+.++.+++..+.++++
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443333
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=90.99 E-value=20 Score=36.50 Aligned_cols=183 Identities=9% Similarity=-0.028 Sum_probs=86.3
Q ss_pred CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCE-EEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551 53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTK-LLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 131 (507)
..++++|+.++.-+.+.... .........-+++ |++.....+ ..++|.+|+.++....
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~-----------------g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~ 286 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFR-----------------GHNGAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQ 286 (429)
T ss_pred cEEEEEeCCCCceEEEecCC-----------------CccCceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEe
Confidence 46899999887665554321 1111112222444 444332221 2359999998888766
Q ss_pred eecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEc
Q 010551 132 METSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG 210 (507)
Q Consensus 132 ~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G 210 (507)
+.. .+. ........-++ .|++....++ ...+|.+|..+..-..+.. . . ......-++++|++.+
T Consensus 287 lt~---~~~-~~~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~--~---~--~~~~~SpDG~~ia~~~ 351 (429)
T PRK01742 287 LTS---GAG-NNTEPSWSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG--R---G--YSAQISADGKTLVMIN 351 (429)
T ss_pred ecc---CCC-CcCCEEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEecC--C---C--CCccCCCCCCEEEEEc
Confidence 642 111 11111122244 4554433222 2467888876654333321 1 1 1111222345455543
Q ss_pred CCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEec
Q 010551 211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT 285 (507)
Q Consensus 211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~ 285 (507)
+ +.++.+|+.++.+..+... . ........-+++++++++..+. ..-+++.+.....-..+.
T Consensus 352 ~-------~~i~~~Dl~~g~~~~lt~~--~---~~~~~~~sPdG~~i~~~s~~g~--~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 352 G-------DNVVKQDLTSGSTEVLSST--F---LDESPSISPNGIMIIYSSTQGL--GKVLQLVSADGRFKARLP 412 (429)
T ss_pred C-------CCEEEEECCCCCeEEecCC--C---CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCceEEcc
Confidence 3 4688899999988765321 1 1111122235667777654322 223444555444444443
No 207
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=90.94 E-value=2.1 Score=43.31 Aligned_cols=17 Identities=18% Similarity=0.636 Sum_probs=13.0
Q ss_pred hhcccccCCCceeeeec
Q 010551 488 ATSVQTQGSGGVWRWIA 504 (507)
Q Consensus 488 ~~~~~~q~~~g~~~~~~ 504 (507)
....|+.+++|.|-|.+
T Consensus 434 ~p~vqeKK~s~IWqFFS 450 (832)
T KOG2077|consen 434 NPAVQEKKRSSIWQFFS 450 (832)
T ss_pred CchhhhhccccHHHHHH
Confidence 34568899999998753
No 208
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.87 E-value=2.3 Score=49.25 Aligned_cols=6 Identities=33% Similarity=0.523 Sum_probs=2.5
Q ss_pred CCceee
Q 010551 496 SGGVWR 501 (507)
Q Consensus 496 ~~g~~~ 501 (507)
-.|+.|
T Consensus 514 ~~Gv~G 519 (1163)
T COG1196 514 LPGVYG 519 (1163)
T ss_pred CCCccc
Confidence 344444
No 209
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=90.86 E-value=1.9 Score=40.12 Aligned_cols=69 Identities=28% Similarity=0.378 Sum_probs=39.6
Q ss_pred HHhhccchhHHHhHHHHHhhHHHhhh-------hhhhhHHHHHHHHHHHH-------hHHHHHHHHHHHHHhHHHHHHHH
Q 010551 420 DEVNSTHSELSKELSSVQGQLVAERS-------RCFKLEAQIAELQKMLE-------SSQTIENEVQILRQQKSAFEQEM 485 (507)
Q Consensus 420 ~~~~~~~~e~~~el~~~~~~~~~~~~-------~~~~~e~~~~e~~~~~~-------~~~~le~e~~~~~~~~~~~~~~~ 485 (507)
++++.++.|+.+++++-++++..+.+ ++++|-+-+.|+++-.- -....++++++++.++..|++||
T Consensus 3 dd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeREL 82 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLEREL 82 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666655554422 12233344444443321 12267788888888888888888
Q ss_pred HHh
Q 010551 486 ERA 488 (507)
Q Consensus 486 ~~~ 488 (507)
-++
T Consensus 83 ARa 85 (351)
T PF07058_consen 83 ARA 85 (351)
T ss_pred HHh
Confidence 654
No 210
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.86 E-value=1.3 Score=48.77 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=38.4
Q ss_pred hhhhHHHHHHhhccchhH-HHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH-------HHHHHHHHHHHhHHHHHH
Q 010551 412 NSRFREKIDEVNSTHSEL-SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-------TIENEVQILRQQKSAFEQ 483 (507)
Q Consensus 412 ~~~l~~~l~~~~~~~~e~-~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-------~le~e~~~~~~~~~~~~~ 483 (507)
...++.++++++.++++. .+-+...+.+.+..+.++..++.++.++++++.+.. .|+++.+..++..+.+.+
T Consensus 318 v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~ 397 (754)
T TIGR01005 318 VVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLT 397 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455544443322 222233344445455555566666666665554444 455555555555555555
Q ss_pred HHHHhh
Q 010551 484 EMERAT 489 (507)
Q Consensus 484 ~~~~~~ 489 (507)
.+++++
T Consensus 398 r~~e~~ 403 (754)
T TIGR01005 398 NYRQAA 403 (754)
T ss_pred HHHHHH
Confidence 555554
No 211
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.75 E-value=3.8 Score=39.31 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=13.7
Q ss_pred hhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhh
Q 010551 412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERS 445 (507)
Q Consensus 412 ~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~ 445 (507)
...++..++...+++++.++++.+.+..++..+.
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433333
No 212
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.66 E-value=19 Score=35.76 Aligned_cols=153 Identities=14% Similarity=0.048 Sum_probs=81.2
Q ss_pred EEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCC
Q 010551 34 AVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK 111 (507)
Q Consensus 34 ~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 111 (507)
+..++.+|+... ...++.+|+.+++ |+...... ..........-+++||+-.. ..
T Consensus 65 ~~~dg~v~~~~~------~G~i~A~d~~~g~~~W~~~~~~~----------------~~~~~~~~~~~~G~i~~g~~-~g 121 (370)
T COG1520 65 ADGDGTVYVGTR------DGNIFALNPDTGLVKWSYPLLGA----------------VAQLSGPILGSDGKIYVGSW-DG 121 (370)
T ss_pred EeeCCeEEEecC------CCcEEEEeCCCCcEEecccCcCc----------------ceeccCceEEeCCeEEEecc-cc
Confidence 566888888611 1179999999987 86644320 01111122222677666433 22
Q ss_pred CCCCcceEEEEECCCC--cEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCC--cEEEeccCC
Q 010551 112 KSSDSMIVRFIDLETN--LCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVTQ 187 (507)
Q Consensus 112 ~~~~~~~~~~yd~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~--~W~~~~~~~ 187 (507)
.+++||..++ .|+..... . ++..-.++..++.+|+-. ..+.++.+|..++ .|..-...+
T Consensus 122 ------~~y~ld~~~G~~~W~~~~~~---~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~ 184 (370)
T COG1520 122 ------KLYALDASTGTLVWSRNVGG---S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP 184 (370)
T ss_pred ------eEEEEECCCCcEEEEEecCC---C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc
Confidence 5999999766 48776532 1 222222333344555432 1346888988765 587554322
Q ss_pred CCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc--EEe
Q 010551 188 TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQ 233 (507)
Q Consensus 188 ~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~ 233 (507)
.+ .+.....+ +.++.+|+ |..+ . ...++.+|+.+++ |..
T Consensus 185 -~~-~~~~~~~~-~~~~~vy~-~~~~--~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 185 -LS-LSIYGSPA-IASGTVYV-GSDG--Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred -cc-cccccCce-eecceEEE-ecCC--C-cceEEEEEccCCcEeeee
Confidence 11 12122222 44564444 4332 1 2368999997764 774
No 213
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=90.60 E-value=7.2 Score=35.02 Aligned_cols=47 Identities=6% Similarity=0.066 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ 437 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~ 437 (507)
...|.+|+..+...+.+......+....+.+.+.++.+.+.+-+++.
T Consensus 79 ~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii 125 (204)
T PRK09174 79 GGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIA 125 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666655555666666666666666655555443
No 214
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=90.52 E-value=14 Score=33.89 Aligned_cols=146 Identities=14% Similarity=0.115 Sum_probs=66.3
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551 100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 177 (507)
Q Consensus 100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t 177 (507)
++..++.|+. ...+.+||..++...... ........++.+ ++.+++.|+.+ +.+..||+.+
T Consensus 62 ~~~~l~~~~~------~~~i~i~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~ 124 (289)
T cd00200 62 DGTYLASGSS------DKTIRLWDLETGECVRTL-----TGHTSYVSSVAFSPDGRILSSSSRD------KTIKVWDVET 124 (289)
T ss_pred CCCEEEEEcC------CCeEEEEEcCcccceEEE-----eccCCcEEEEEEcCCCCEEEEecCC------CeEEEEECCC
Confidence 3445556654 234888888875322221 111111222222 23666666633 3588999875
Q ss_pred CcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeE
Q 010551 178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW 256 (507)
Q Consensus 178 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l 256 (507)
.+-...-. .....-.++....++.+++.|+.+ +.+.+||+.+..-...- . .....-.++... ++..
T Consensus 125 ~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~--~--~~~~~i~~~~~~~~~~~ 191 (289)
T cd00200 125 GKCLTTLR----GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKCVATL--T--GHTGEVNSVAFSPDGEK 191 (289)
T ss_pred cEEEEEec----cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccccceeE--e--cCccccceEEECCCcCE
Confidence 54322211 111112223333334455444422 36888988754322210 0 111111222333 2335
Q ss_pred EEEeccCCCCCcceEEEEECCCCc
Q 010551 257 YIVGGGDNNNGCQETIVLNMTKLA 280 (507)
Q Consensus 257 ~v~GG~~~~~~~~~~~~~d~~~~~ 280 (507)
+++++.+ ..+.+||+.+..
T Consensus 192 l~~~~~~-----~~i~i~d~~~~~ 210 (289)
T cd00200 192 LLSSSSD-----GTIKLWDLSTGK 210 (289)
T ss_pred EEEecCC-----CcEEEEECCCCc
Confidence 6665542 257788887643
No 215
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=90.48 E-value=7.8 Score=34.12 Aligned_cols=50 Identities=10% Similarity=0.087 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL 440 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~ 440 (507)
...+.+++..+...+........+..+..++.+..+.+.+++-+++..+-
T Consensus 57 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A 106 (181)
T PRK13454 57 GAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAET 106 (181)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666666666666666666666666655555444433
No 216
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.45 E-value=3 Score=44.07 Aligned_cols=50 Identities=20% Similarity=0.318 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL 440 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~ 440 (507)
.+.++.+...|++...+...+...|+.+.+......+++++.|.+.+.++
T Consensus 17 a~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~ 66 (617)
T PF15070_consen 17 AQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQM 66 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555555555555555555555555555555555444333
No 217
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=90.44 E-value=9.5 Score=32.57 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhhccc
Q 010551 478 KSAFEQEMERATSVQ 492 (507)
Q Consensus 478 ~~~~~~~~~~~~~~~ 492 (507)
+..+...+++++..|
T Consensus 142 l~~v~~~~e~~~~~q 156 (159)
T PF05384_consen 142 LQQVSEQIEDAQQKQ 156 (159)
T ss_pred HHHHHHHHHHHHHhh
Confidence 334455555555443
No 218
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.25 E-value=3.1 Score=44.84 Aligned_cols=9 Identities=22% Similarity=0.741 Sum_probs=3.8
Q ss_pred EEEEeccCC
Q 010551 103 LLILGGHYK 111 (507)
Q Consensus 103 lyv~GG~~~ 111 (507)
+.+++|.++
T Consensus 30 ~~~i~G~Ng 38 (650)
T TIGR03185 30 IILIGGLNG 38 (650)
T ss_pred EEEEECCCC
Confidence 444444433
No 219
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=90.19 E-value=5.9 Score=37.80 Aligned_cols=52 Identities=19% Similarity=0.337 Sum_probs=28.8
Q ss_pred hhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHh
Q 010551 412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 463 (507)
Q Consensus 412 ~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~ 463 (507)
+..|+..|+++++.+.++.+++.+...+++.++.....++.++.+++.++.+
T Consensus 114 vd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 114 VDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555443
No 220
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=90.13 E-value=9.4 Score=33.32 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhcccccCCCcee
Q 010551 466 TIENEVQILRQQKSAFEQEMERATSVQTQGSGGVW 500 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~~~~~~~~~~~~q~~~g~~ 500 (507)
.|+.+...++.++.++.+++. .++.|...++|
T Consensus 158 aL~~e~~aaqaQL~~lQ~qv~---~Lq~q~~~~~~ 189 (192)
T PF11180_consen 158 ALEAERRAAQAQLRQLQRQVR---QLQRQANEPIP 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHhcCCCC
Confidence 444455555555555544443 33444455554
No 221
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=90.13 E-value=8.2 Score=34.74 Aligned_cols=53 Identities=9% Similarity=0.179 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE 443 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~ 443 (507)
...+.+++..++..+.+......+..+.+.+.+..+++.+.+.+++..+-..+
T Consensus 74 ~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~e 126 (205)
T PRK06231 74 QRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYE 126 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666677666666666666666666666666666666655554444333
No 222
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.08 E-value=9.8 Score=31.51 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=7.8
Q ss_pred hhhhhhhHHHHHHHHHHH
Q 010551 444 RSRCFKLEAQIAELQKML 461 (507)
Q Consensus 444 ~~~~~~~e~~~~e~~~~~ 461 (507)
++....++.++.+++.+.
T Consensus 65 r~e~~~~~~~~~~l~~~~ 82 (132)
T PF07926_consen 65 REELQELQQEINELKAEA 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 223
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=90.08 E-value=20 Score=35.17 Aligned_cols=233 Identities=14% Similarity=0.106 Sum_probs=109.6
Q ss_pred eEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE---CCEEEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551 55 VQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 55 ~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 131 (507)
++.||..++++..+..... -..++..++ ++.||+..... .....-..+..+..+++.+.
T Consensus 17 ~~~~d~~~g~l~~~~~~~~-----------------~~~Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~ 78 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAE-----------------GENPSWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTL 78 (345)
T ss_dssp EEEEETTTTEEEEEEEEEE-----------------SSSECCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCceEeeeecC-----------------CCCCceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEE
Confidence 4455668899988765321 112222233 56788875543 11113335555566678887
Q ss_pred eecCCCCCCCCcCcEEEEE--C-CEEEEEcCCCCCCCccCcEEEEECCCC-cEEEe----cc--CCCCC---CCCCCceE
Q 010551 132 METSGKVPVTRGGHSVTLV--G-SRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAV----EV--TQTPP---APRYDHSA 198 (507)
Q Consensus 132 ~~~~g~~p~~r~~~~~~~~--~-~~iy~~GG~~~~~~~~n~~~~~d~~t~-~W~~~----~~--~~~~p---~~r~~~~~ 198 (507)
+.. .+..-...+.+.+ + ..||+.- +. .+.+.+|++... .-... .. .++-| .....|.+
T Consensus 79 ~~~---~~~~g~~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v 149 (345)
T PF10282_consen 79 LNS---VPSGGSSPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV 149 (345)
T ss_dssp EEE---EEESSSCEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE
T ss_pred eee---eccCCCCcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE
Confidence 763 2322222233334 3 3565542 21 245788887663 22221 11 11111 12223444
Q ss_pred EEEc-CCEEEEEcCCCCCCCCCcEEEEECCCCc--EEecccCCCCCCCCCcc-EEEEE--CCeEEEEeccCCCCCcceEE
Q 010551 199 ALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGH-AGITI--DENWYIVGGGDNNNGCQETI 272 (507)
Q Consensus 199 ~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~-~~~~~--~~~l~v~GG~~~~~~~~~~~ 272 (507)
.... ++++|+..= -.+.|+.|++.... ....... ..|. -.+. .++.. +..+||+.... +.+.
T Consensus 150 ~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~-~~~~-G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~ 217 (345)
T PF10282_consen 150 VFSPDGRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSI-KVPP-GSGPRHLAFSPDGKYAYVVNELS-----NTVS 217 (345)
T ss_dssp EE-TTSSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEE-ECST-TSSEEEEEE-TTSSEEEEEETTT-----TEEE
T ss_pred EECCCCCEEEEEec-----CCCEEEEEEEeCCCceEEEeecc-cccc-CCCCcEEEEcCCcCEEEEecCCC-----CcEE
Confidence 4443 456666421 13578888887665 5442211 1222 1222 22222 34788886532 3455
Q ss_pred EEECC--CCcEEEeccCCCCCCCCCCC-CceEEEEEcCceEEEEEccCCCCcCceEEEEEC
Q 010551 273 VLNMT--KLAWSILTSVKGRNPLASEG-LSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL 330 (507)
Q Consensus 273 ~~d~~--~~~W~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~ 330 (507)
+|+.. +..++.+...+......... ......+.+++.+||+.-. ..+.+.+|++
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr----~~~sI~vf~~ 274 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR----GSNSISVFDL 274 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC----TTTEEEEEEE
T ss_pred EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec----cCCEEEEEEE
Confidence 55544 66666654333221111112 3333444455678887532 2566777776
No 224
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.99 E-value=28 Score=36.55 Aligned_cols=202 Identities=13% Similarity=0.086 Sum_probs=100.5
Q ss_pred CCeEeeCCCC--ceEEeecCCC-C-C---CccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeecccccc
Q 010551 4 GSWHLELPYD--LWVTLPVSGA-R-P---SPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETEL 74 (507)
Q Consensus 4 ~~~~~d~~~~--~W~~~~~~~~-~-p---~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~ 74 (507)
.++++|..+. .|+.-+.... . + ........++.++.||+... ...++.+|..+++ |+.-.....
T Consensus 80 ~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------dg~l~ALDa~TGk~~W~~~~~~~~- 152 (527)
T TIGR03075 80 RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------DARLVALDAKTGKVVWSKKNGDYK- 152 (527)
T ss_pred cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC------CCEEEEEECCCCCEEeeccccccc-
Confidence 4677787754 6775442110 0 0 01122334556788886432 2469999998875 765321110
Q ss_pred CCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEeecCCCCC------------C
Q 010551 75 DADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVP------------V 140 (507)
Q Consensus 75 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p------------~ 140 (507)
.......+-++.++.||+-..... ......+..||..|++ |+.-...+... +
T Consensus 153 -------------~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~ 218 (527)
T TIGR03075 153 -------------AGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEP 218 (527)
T ss_pred -------------ccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccc
Confidence 001122344556787776532211 1123469999999985 77543211100 0
Q ss_pred ----------CCcCc---EEEEEC---CEEEEEcCC----C-----CCCCccCcEEEEECCCCc--EEEeccCCCCCCCC
Q 010551 141 ----------TRGGH---SVTLVG---SRLIIFGGE----D-----RSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPR 193 (507)
Q Consensus 141 ----------~r~~~---~~~~~~---~~iy~~GG~----~-----~~~~~~n~~~~~d~~t~~--W~~~~~~~~~p~~r 193 (507)
.+.+. ....++ +.+|+--|. . +++.+.+++..+|++|++ |.--.+..+.-.--
T Consensus 219 ~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d 298 (527)
T TIGR03075 219 GAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYD 298 (527)
T ss_pred ccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCcccc
Confidence 01110 112333 345554343 1 234567899999999875 87665433322111
Q ss_pred CCceEEEE----cCC--EEEEEcCCCCCCCCCcEEEEECCCCcE
Q 010551 194 YDHSAALH----ANR--YLIVFGGCSHSIFFNDLHVLDLQTNEW 231 (507)
Q Consensus 194 ~~~~~~~~----~~~--~l~v~GG~~~~~~~~~i~~~d~~~~~W 231 (507)
.....+.+ +++ .+++.+..++ .+|.+|..+++-
T Consensus 299 ~~~~p~l~d~~~~G~~~~~v~~~~K~G-----~~~vlDr~tG~~ 337 (527)
T TIGR03075 299 GVNEMILFDLKKDGKPRKLLAHADRNG-----FFYVLDRTNGKL 337 (527)
T ss_pred CCCCcEEEEeccCCcEEEEEEEeCCCc-----eEEEEECCCCce
Confidence 11122222 222 3666666543 577888777653
No 225
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.96 E-value=3.7 Score=41.50 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=24.7
Q ss_pred HHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhh
Q 010551 395 KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL 450 (507)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~ 450 (507)
+.+..++...+...+.+..+|.+..+...+..+..+-+-...+.++...+.|+..+
T Consensus 113 eneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rl 168 (772)
T KOG0999|consen 113 ENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARL 168 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555544444444444444333333444444444444433
No 226
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.76 E-value=14 Score=32.90 Aligned_cols=99 Identities=18% Similarity=0.107 Sum_probs=61.6
Q ss_pred eeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEE
Q 010551 94 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVH 171 (507)
Q Consensus 94 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~ 171 (507)
.++...+++||.--|..+.+ .+.++|+.+++ |+..- + |+...+-..+..++.+|..-=.+. -.+
T Consensus 49 QGL~~~~g~i~esTG~yg~S----~ir~~~L~~gq~~~s~~l---~-~~~~FgEGit~~gd~~y~LTw~eg------vaf 114 (262)
T COG3823 49 QGLEYLDGHILESTGLYGFS----KIRVSDLTTGQEIFSEKL---A-PDTVFGEGITKLGDYFYQLTWKEG------VAF 114 (262)
T ss_pred cceeeeCCEEEEeccccccc----eeEEEeccCceEEEEeec---C-CccccccceeeccceEEEEEeccc------eeE
Confidence 35666688888887776544 49999999886 44332 2 345666788889999998754432 367
Q ss_pred EEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCC
Q 010551 172 FLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC 212 (507)
Q Consensus 172 ~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~ 212 (507)
.||+.+.+- .|..+.+--+-+.+.-+. .+++--|.
T Consensus 115 ~~d~~t~~~-----lg~~~y~GeGWgLt~d~~-~LimsdGs 149 (262)
T COG3823 115 KYDADTLEE-----LGRFSYEGEGWGLTSDDK-NLIMSDGS 149 (262)
T ss_pred EEChHHhhh-----hcccccCCcceeeecCCc-ceEeeCCc
Confidence 777765331 223444444555555433 37776553
No 227
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=89.72 E-value=4.6 Score=44.52 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=18.2
Q ss_pred hhhhhHHHHHHhhccchhHHHhHHHHHhhHH
Q 010551 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLV 441 (507)
Q Consensus 411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~ 441 (507)
+.+.+..+|++++.+++..++++.+++..+.
T Consensus 442 e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 442 EKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666666666555544
No 228
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=89.71 E-value=4.8 Score=35.06 Aligned_cols=21 Identities=10% Similarity=0.303 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 010551 466 TIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~~~~~ 486 (507)
..+.++.++++++..|+.+.+
T Consensus 165 aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 165 AAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455666667777777666654
No 229
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=89.70 E-value=11 Score=32.27 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ 437 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~ 437 (507)
...+.+++..+...+.+..+...+.....++.+..+.+.+.+-+++.
T Consensus 48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii 94 (156)
T CHL00118 48 LKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEI 94 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666555555555556666666665555544443
No 230
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=89.56 E-value=4.9 Score=43.52 Aligned_cols=42 Identities=19% Similarity=0.424 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHh
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 432 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~e 432 (507)
.+.++..+..++..+.....+.+.++.++++.+..+.+++.+
T Consensus 598 lE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~e 639 (769)
T PF05911_consen 598 LEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSE 639 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555554444444444444444444444444444333
No 231
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=89.52 E-value=2.7 Score=40.05 Aligned_cols=47 Identities=23% Similarity=0.271 Sum_probs=23.7
Q ss_pred hHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHH
Q 010551 415 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 461 (507)
Q Consensus 415 l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~ 461 (507)
++.+..+++..+.++.-+.....-+.+.++.+++++++.+.+++++.
T Consensus 89 vEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 89 VEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444455555555555555555555555554
No 232
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=89.49 E-value=13 Score=32.78 Aligned_cols=96 Identities=15% Similarity=0.220 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHH----HHHHHHHhHHH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA----ELQKMLESSQT 466 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~----e~~~~~~~~~~ 466 (507)
+++|+.+.++.+..+.++...+..-+..+........+.+.+++.++.-++..+..+...+.-.. ++.++-+-++.
T Consensus 69 veqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLea 148 (188)
T PF05335_consen 69 VEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEA 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444433322 22233333334
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 010551 467 IENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 467 le~e~~~~~~~~~~~~~~~~ 486 (507)
-.+.++.|++++.....+++
T Consensus 149 Ak~Rve~L~~QL~~Ar~D~~ 168 (188)
T PF05335_consen 149 AKRRVEELQRQLQAARADYE 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555556666555555544
No 233
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=89.42 E-value=10 Score=30.66 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=35.6
Q ss_pred ccchhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhh
Q 010551 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERS 445 (507)
Q Consensus 385 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~ 445 (507)
+.+...+..++.-++...+.+-+.+.-..-|+++++.+..+.-.+++-+...+.-+..++-
T Consensus 9 E~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLql 69 (134)
T PF15233_consen 9 EDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQL 69 (134)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666666666666666667777777766655555545544444444433
No 234
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=89.39 E-value=3.5 Score=45.45 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=14.2
Q ss_pred HHHHHHHhhhhHHHHhhhhhhHHHHHHhhc
Q 010551 395 KEDKRVLELSLTEVRTENSRFREKIDEVNS 424 (507)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (507)
+++....|..+....++..+|...+++++.
T Consensus 1604 ~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~ 1633 (1758)
T KOG0994|consen 1604 QEETAAAEKLATSATQQLGELETRMEELKH 1633 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444555555555555443
No 235
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=89.32 E-value=11 Score=32.83 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL 440 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~ 440 (507)
...|.+++..+...+........+....+.+.+.++.+.+.+.+.+..+-
T Consensus 44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a 93 (173)
T PRK13453 44 KDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDA 93 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666555555555666666666666655555544433
No 236
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=89.30 E-value=3.8 Score=47.61 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=13.2
Q ss_pred HHHHhhhhHHHHhhhhhhHHHHHHhhccchhHH
Q 010551 398 KRVLELSLTEVRTENSRFREKIDEVNSTHSELS 430 (507)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~ 430 (507)
..++++.+.........++..+...+.+++..+
T Consensus 623 ~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (1201)
T PF12128_consen 623 QEELEKQLKQINKKIEELKREITQAEQELKQAE 655 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333444433333344444444444444333333
No 237
>PRK01742 tolB translocation protein TolB; Provisional
Probab=89.15 E-value=28 Score=35.43 Aligned_cols=140 Identities=12% Similarity=0.085 Sum_probs=69.0
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551 117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 195 (507)
Q Consensus 117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~ 195 (507)
..++.+|+.++.-+.+. ..+. ........-++ +|++....++ .-++|.+|+.+.....+... . ...
T Consensus 228 ~~i~i~dl~tg~~~~l~---~~~g-~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~--~~~ 294 (429)
T PRK01742 228 SQLVVHDLRSGARKVVA---SFRG-HNGAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTSG---A--GNN 294 (429)
T ss_pred cEEEEEeCCCCceEEEe---cCCC-ccCceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeeccC---C--CCc
Confidence 45999999988766654 2221 11111222244 4544332222 23589999988877666431 1 111
Q ss_pred ceEEEEcCC-EEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEE
Q 010551 196 HSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 274 (507)
Q Consensus 196 ~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 274 (507)
.......++ .|++....++ ...+|.++.....-..+. .. .. .....-+++.+++.+. ..++.+
T Consensus 295 ~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~--~~----~~-~~~~SpDG~~ia~~~~------~~i~~~ 358 (429)
T PRK01742 295 TEPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVG--GR----GY-SAQISADGKTLVMING------DNVVKQ 358 (429)
T ss_pred CCEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEec--CC----CC-CccCCCCCCEEEEEcC------CCEEEE
Confidence 222233344 3444332222 236888887665443331 10 11 1111223444444332 357889
Q ss_pred ECCCCcEEEec
Q 010551 275 NMTKLAWSILT 285 (507)
Q Consensus 275 d~~~~~W~~v~ 285 (507)
|+.+..+..+.
T Consensus 359 Dl~~g~~~~lt 369 (429)
T PRK01742 359 DLTSGSTEVLS 369 (429)
T ss_pred ECCCCCeEEec
Confidence 99998887654
No 238
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.11 E-value=3.7 Score=40.43 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=13.7
Q ss_pred hhhhhHHHHHHhhccchhHHHhHHHHHhhH
Q 010551 411 ENSRFREKIDEVNSTHSELSKELSSVQGQL 440 (507)
Q Consensus 411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~ 440 (507)
..++|..++........++.++.+..+.-+
T Consensus 294 yLaKL~~~l~~~~~~~~~ltqqwed~R~pl 323 (521)
T KOG1937|consen 294 YLAKLMGKLAELNKQMEELTQQWEDTRQPL 323 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344444444444444444444444444433
No 239
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=89.03 E-value=16 Score=34.33 Aligned_cols=231 Identities=15% Similarity=0.121 Sum_probs=104.9
Q ss_pred CceEEeecCCCCC--CccccceEEEE--CCEEEEEc--CCCCCccCC-c-eEEEEcc-CCceeeeccccccCCCccccCC
Q 010551 13 DLWVTLPVSGARP--SPRYKHAAAVF--DQKLYIVG--GSRNGRFLS-D-VQVFDLR-SLAWSNLRLETELDADKTEDSG 83 (507)
Q Consensus 13 ~~W~~~~~~~~~p--~~r~~~~~~~~--~~~iyi~G--G~~~~~~~~-~-~~~~d~~-~~~W~~~~~~~~~~~~~~~~~~ 83 (507)
..|.....-...+ ..+.+..+++. ++.|+++- +........ . .+....+ -.+|......... .
T Consensus 30 ~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~--------~ 101 (275)
T PF13088_consen 30 KTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPG--------W 101 (275)
T ss_dssp TEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHH--------C
T ss_pred CeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccc--------c
Confidence 4698765421222 33444444443 78888875 221111111 1 1355555 3489876532210 0
Q ss_pred CcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCC-cEEEeecCCCCCCCCcCc-EEEEE-CCEEEEEcCC
Q 010551 84 LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN-LCGVMETSGKVPVTRGGH-SVTLV-GSRLIIFGGE 160 (507)
Q Consensus 84 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~g~~p~~r~~~-~~~~~-~~~iy~~GG~ 160 (507)
....+.+-.+..+..-++.+++.. +.........+..|..+.+ +|+...+.. +...... +.+.. ++.|+++--.
T Consensus 102 ~~~~~~~~~~~~i~~~~G~l~~~~-~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~ 178 (275)
T PF13088_consen 102 FGNFSGPGRGPPIQLPDGRLIAPY-YHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRT 178 (275)
T ss_dssp CCSCEECSEEEEEEECTTEEEEEE-EEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEE
T ss_pred ccceeccceeeeeEecCCCEEEEE-eeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEc
Confidence 000111122223444578887762 1111111334555666655 599887421 2212222 33333 4577776543
Q ss_pred CCCCCccCcEEEEECC-CCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCC
Q 010551 161 DRSRKLLNDVHFLDLE-TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD 239 (507)
Q Consensus 161 ~~~~~~~n~~~~~d~~-t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~ 239 (507)
. ... .-.+.+..+ -.+|+.+... .+|.+.....++...++.++++.........-.+++-.-...+|..+....+
T Consensus 179 ~-~~~--~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~ 254 (275)
T PF13088_consen 179 E-GND--DIYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDD 254 (275)
T ss_dssp C-SST--EEEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEE
T ss_pred c-CCC--cEEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeC
Confidence 2 111 233444444 3469987643 3455555555555667677777763222111122222223567987543333
Q ss_pred CCCCC-CccEEEEE-CCeEEE
Q 010551 240 LVTGR-AGHAGITI-DENWYI 258 (507)
Q Consensus 240 ~p~~r-~~~~~~~~-~~~l~v 258 (507)
.+... .+.+++.. +++|+|
T Consensus 255 ~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 255 GPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EE-CCEEEEEEEEEETTEEEE
T ss_pred CCCCcEECCeeEEeCCCcCCC
Confidence 23222 33344555 457765
No 240
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=89.00 E-value=8 Score=33.78 Aligned_cols=7 Identities=43% Similarity=0.657 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 010551 478 KSAFEQE 484 (507)
Q Consensus 478 ~~~~~~~ 484 (507)
+..++++
T Consensus 181 ~s~LEeq 187 (193)
T PF14662_consen 181 KSRLEEQ 187 (193)
T ss_pred HHHHHHH
Confidence 3333333
No 241
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=88.98 E-value=6.2 Score=39.10 Aligned_cols=35 Identities=9% Similarity=0.177 Sum_probs=17.0
Q ss_pred hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhh
Q 010551 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERS 445 (507)
Q Consensus 411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~ 445 (507)
+...+.+.++.+..-+....+.|++-+.+.+.++-
T Consensus 384 EKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLql 418 (527)
T PF15066_consen 384 EKNDIEKTLQNLQEALANTQKHLQESRNEKETLQL 418 (527)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444445555555555555555555544444433
No 242
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=88.91 E-value=25 Score=34.57 Aligned_cols=120 Identities=14% Similarity=0.052 Sum_probs=64.9
Q ss_pred CEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCC---CC
Q 010551 38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK---SS 114 (507)
Q Consensus 38 ~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~---~~ 114 (507)
..+|+.-.....- .+.+.++|..+++-...-+.+. .|| +.+..-+..||+.-.+... +.
T Consensus 13 ~~v~V~d~~~~~~-~~~v~ViD~~~~~v~g~i~~G~---------------~P~--~~~spDg~~lyva~~~~~R~~~G~ 74 (352)
T TIGR02658 13 RRVYVLDPGHFAA-TTQVYTIDGEAGRVLGMTDGGF---------------LPN--PVVASDGSFFAHASTVYSRIARGK 74 (352)
T ss_pred CEEEEECCccccc-CceEEEEECCCCEEEEEEEccC---------------CCc--eeECCCCCEEEEEeccccccccCC
Confidence 4467665532221 2789999998865433222221 123 2222335678888764221 22
Q ss_pred CcceEEEEECCCCcEEEeecCCCCCCCCcC------cEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEE
Q 010551 115 DSMIVRFIDLETNLCGVMETSGKVPVTRGG------HSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDA 182 (507)
Q Consensus 115 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~------~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~ 182 (507)
..+.+.+||+.|.+-..--+.+ +.||.. ..+..-++ .||+. -.+ ..+.+.+.|+.+.+-..
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p--~~p~~~~~~~~~~~~ls~dgk~l~V~-n~~----p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELP--EGPRFLVGTYPWMTSLTPDNKTLLFY-QFS----PSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCCEEEEEECccCcEEeEEccC--CCchhhccCccceEEECCCCCEEEEe-cCC----CCCEEEEEECCCCcEEE
Confidence 4567999999999866433322 333311 22222344 56654 222 14568888888877544
No 243
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=88.87 E-value=27 Score=34.99 Aligned_cols=185 Identities=8% Similarity=0.042 Sum_probs=98.3
Q ss_pred CCCCeEeeCCCCceEEeecCCCCCCccccce------------EEEECCEEEEEcCCCCCccCCceEEEEccCCceeeec
Q 010551 2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHA------------AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLR 69 (507)
Q Consensus 2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~------------~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~ 69 (507)
--+.|.|||.+.+-+.+.. .+|.-|..-- .+++++.++.+=- ....+++++-.+---++.
T Consensus 286 ~GdIylydP~td~lekldI--~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS------RGkaFi~~~~~~~~iqv~ 357 (668)
T COG4946 286 AGDIYLYDPETDSLEKLDI--GLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS------RGKAFIMRPWDGYSIQVG 357 (668)
T ss_pred CCcEEEeCCCcCcceeeec--CCccccccccccccCHHHhhhhhccCCCcEEEEEe------cCcEEEECCCCCeeEEcC
Confidence 3578999999999999986 4444432111 1223333332211 123555554333222222
Q ss_pred cccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEE
Q 010551 70 LETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTL 149 (507)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~ 149 (507)
.. .|..+.-...+++-+++|-..+ ..+.+||..++.-+.+. .+.++.....+.
T Consensus 358 ~~------------------~~VrY~r~~~~~e~~vigt~dg-----D~l~iyd~~~~e~kr~e----~~lg~I~av~vs 410 (668)
T COG4946 358 KK------------------GGVRYRRIQVDPEGDVIGTNDG-----DKLGIYDKDGGEVKRIE----KDLGNIEAVKVS 410 (668)
T ss_pred CC------------------CceEEEEEccCCcceEEeccCC-----ceEEEEecCCceEEEee----CCccceEEEEEc
Confidence 11 2344444444555677775543 24889999999877764 334443333333
Q ss_pred ECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceE--EEEcCCEEEEEcCCCCCCCCCcEEEEECC
Q 010551 150 VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA--ALHANRYLIVFGGCSHSIFFNDLHVLDLQ 227 (507)
Q Consensus 150 ~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~--~~~~~~~l~v~GG~~~~~~~~~i~~~d~~ 227 (507)
-+++..+.+-. .-++|.+|+++++-+.+.- .+.+... +.+.+. -++.=+.-.+-.+..+.+||..
T Consensus 411 ~dGK~~vvaNd------r~el~vididngnv~~idk------S~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 411 PDGKKVVVAND------RFELWVIDIDNGNVRLIDK------SEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred CCCcEEEEEcC------ceEEEEEEecCCCeeEecc------cccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecC
Confidence 45554444432 2369999999988777743 1222111 112333 2333233344455678888887
Q ss_pred CCcEEec
Q 010551 228 TNEWSQP 234 (507)
Q Consensus 228 ~~~W~~~ 234 (507)
+++--.+
T Consensus 478 ~~Kiy~v 484 (668)
T COG4946 478 GGKIYDV 484 (668)
T ss_pred CCeEEEe
Confidence 7665554
No 244
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=88.86 E-value=12 Score=32.64 Aligned_cols=49 Identities=8% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhh
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ 439 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~ 439 (507)
...+.+++..+...+........+..+.+++.+.++++.+++.+++..+
T Consensus 44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~ 92 (175)
T PRK14472 44 LSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIRE 92 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666666566666666666666666666655554443
No 245
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.86 E-value=4.6 Score=42.80 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 010551 391 IDAIKEDKRVL 401 (507)
Q Consensus 391 ~~~l~~~~~~~ 401 (507)
+..++.+...+
T Consensus 308 i~~l~~~l~~l 318 (562)
T PHA02562 308 LKELQHSLEKL 318 (562)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 246
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=88.85 E-value=8 Score=37.79 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=10.5
Q ss_pred hhhhHHHHHHhhccchhHHHhHHHH
Q 010551 412 NSRFREKIDEVNSTHSELSKELSSV 436 (507)
Q Consensus 412 ~~~l~~~l~~~~~~~~e~~~el~~~ 436 (507)
..-++..+++.+.++.++.+|..++
T Consensus 43 ~~ai~a~~~~~E~~l~~Lq~e~~~l 67 (459)
T KOG0288|consen 43 SRAIKAKLQEKELELNRLQEENTQL 67 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333
No 247
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=88.81 E-value=12 Score=30.64 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=15.0
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 010551 458 QKMLESSQTIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 458 ~~~~~~~~~le~e~~~~~~~~~~~~~~~~ 486 (507)
.+...++..+..++..++.+++.+++.++
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555544
No 248
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=88.80 E-value=18 Score=32.91 Aligned_cols=139 Identities=18% Similarity=0.227 Sum_probs=73.2
Q ss_pred cEEEeecC--CCCCCCCcC-cEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCC
Q 010551 128 LCGVMETS--GKVPVTRGG-HSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR 204 (507)
Q Consensus 128 ~W~~~~~~--g~~p~~r~~-~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~ 204 (507)
.|+...|- +..+.|-.+ +.+..-.|.|+..||-+ .+|..|+++++.+..-- -..-+-|+.+.-+.+
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-------~~y~~dlE~G~i~r~~r----GHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-------VIYQVDLEDGRIQREYR----GHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCCe-------EEEEEEecCCEEEEEEc----CCcceeeeeeecccC
Confidence 47665531 223333333 33333467888888732 48999999999876632 113445555543333
Q ss_pred EEEEEcCCCCCCCCCcEEEEECCCCcEEec-cc--CCCCCCCCCcc--EEEEECCeEEEEeccCCCCCcceEEEEECCCC
Q 010551 205 YLIVFGGCSHSIFFNDLHVLDLQTNEWSQP-EI--KGDLVTGRAGH--AGITIDENWYIVGGGDNNNGCQETIVLNMTKL 279 (507)
Q Consensus 205 ~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~-~~--~~~~p~~r~~~--~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~ 279 (507)
-=++-|+-++ .+.++|.++.+-.+. .. ...+..|-.+- .+...+...+|+||+-. +-++++.+.
T Consensus 169 ~qilsG~EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~------lslwhLrss 237 (325)
T KOG0649|consen 169 GQILSGAEDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK------LSLWHLRSS 237 (325)
T ss_pred cceeecCCCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc------eeEEeccCC
Confidence 2445555443 477888888776553 11 11111221222 34445667778877543 335555554
Q ss_pred cEEEeccCC
Q 010551 280 AWSILTSVK 288 (507)
Q Consensus 280 ~W~~v~~~~ 288 (507)
+=+.+-++|
T Consensus 238 e~t~vfpip 246 (325)
T KOG0649|consen 238 ESTCVFPIP 246 (325)
T ss_pred CceEEEecc
Confidence 444444443
No 249
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=88.62 E-value=13 Score=32.88 Aligned_cols=48 Identities=10% Similarity=0.168 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHh
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~ 438 (507)
...+.+++..+...+........+..+.+.+.+..+++.+++.+++..
T Consensus 50 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~ 97 (184)
T CHL00019 50 SDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRV 97 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666555555555555555555666555555555444433
No 250
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=88.50 E-value=28 Score=34.68 Aligned_cols=145 Identities=15% Similarity=0.105 Sum_probs=67.3
Q ss_pred ceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcC-cEEEEE--CCEEEEEcCCCCCCCccCc
Q 010551 93 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGG-HSVTLV--GSRLIIFGGEDRSRKLLND 169 (507)
Q Consensus 93 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~-~~~~~~--~~~iy~~GG~~~~~~~~n~ 169 (507)
-++++..+.-.|++||.-. -.+|.+.++|+.--.+- .+.+. .++..+ ++..++-||.|+.
T Consensus 84 v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v~------~aHYQ~ITcL~fs~dgs~iiTgskDg~------ 146 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNVL------SAHYQSITCLKFSDDGSHIITGSKDGA------ 146 (476)
T ss_pred eeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHHH------HhhccceeEEEEeCCCcEEEecCCCcc------
Confidence 4566666666778877321 23888888888532211 11111 133333 4577777887653
Q ss_pred EEEEECCCCc--EEEeccCCCCCCCCCCceEEEEcCCEEEE-EcCCCCC----CCCCcEEEEECCCCcEEecccCCCCCC
Q 010551 170 VHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIV-FGGCSHS----IFFNDLHVLDLQTNEWSQPEIKGDLVT 242 (507)
Q Consensus 170 ~~~~d~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~l~v-~GG~~~~----~~~~~i~~~d~~~~~W~~~~~~~~~p~ 242 (507)
+..+.+.+-- -..-.+ .+...-..|++.+. + +++ +||.+.. ..-+.+-+||++.+.--. ....
T Consensus 147 V~vW~l~~lv~a~~~~~~--~p~~~f~~HtlsIT--D-l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl-----ti~f 216 (476)
T KOG0646|consen 147 VLVWLLTDLVSADNDHSV--KPLHIFSDHTLSIT--D-LQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL-----TITF 216 (476)
T ss_pred EEEEEEEeecccccCCCc--cceeeeccCcceeE--E-EEecCCCccceEEEecCCceEEEEEeccceeeE-----EEec
Confidence 4444432100 000000 11223345555442 2 333 4444322 111346677877764322 2233
Q ss_pred CCCccEEEEE-CCeEEEEeccCC
Q 010551 243 GRAGHAGITI-DENWYIVGGGDN 264 (507)
Q Consensus 243 ~r~~~~~~~~-~~~l~v~GG~~~ 264 (507)
|+.-+++++- .++.+.+|+..+
T Consensus 217 p~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred CCcceeEEEcccccEEEecCCcc
Confidence 4555555544 345556665443
No 251
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=88.49 E-value=12 Score=33.31 Aligned_cols=8 Identities=13% Similarity=0.169 Sum_probs=2.9
Q ss_pred HHHhhccc
Q 010551 419 IDEVNSTH 426 (507)
Q Consensus 419 l~~~~~~~ 426 (507)
|..+..++
T Consensus 63 l~~h~eEv 70 (194)
T PF15619_consen 63 LQRHNEEV 70 (194)
T ss_pred HHHHHHHH
Confidence 33333333
No 252
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=88.46 E-value=3.3 Score=45.32 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010551 450 LEAQIAELQKMLESSQTIENEVQILRQQKS 479 (507)
Q Consensus 450 ~e~~~~e~~~~~~~~~~le~e~~~~~~~~~ 479 (507)
+++++++++.++...-+.+++..++.++.+
T Consensus 351 L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~ 380 (726)
T PRK09841 351 LEQERKRLNKRVSAMPSTQQEVLRLSRDVE 380 (726)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 333333333333333344444444444443
No 253
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=88.45 E-value=3.4 Score=30.28 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=6.1
Q ss_pred HHHHHHhHHHHHHHHH
Q 010551 471 VQILRQQKSAFEQEME 486 (507)
Q Consensus 471 ~~~~~~~~~~~~~~~~ 486 (507)
+..+..+++..+.+++
T Consensus 49 ~~~l~~~~~~~e~~~~ 64 (74)
T PF12329_consen 49 IKELKKKLEELEKELE 64 (74)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 254
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=88.42 E-value=3.1 Score=40.87 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=13.2
Q ss_pred hhhhhhHHHHHHhhccchhHHHhHHHHHhh
Q 010551 410 TENSRFREKIDEVNSTHSELSKELSSVQGQ 439 (507)
Q Consensus 410 ~~~~~l~~~l~~~~~~~~e~~~el~~~~~~ 439 (507)
.+...|+.+|...+.++++..++.++.-.+
T Consensus 15 ~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~ 44 (344)
T PF12777_consen 15 EQVEEMQEELEEKQPELEEKQKEAEELLEE 44 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333
No 255
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=88.25 E-value=4 Score=42.92 Aligned_cols=10 Identities=30% Similarity=0.441 Sum_probs=5.2
Q ss_pred CCEEEEEecc
Q 010551 100 GTKLLILGGH 109 (507)
Q Consensus 100 ~~~lyv~GG~ 109 (507)
+++--|+||+
T Consensus 215 ~dk~~VvGGy 224 (1259)
T KOG0163|consen 215 DDKGQVVGGY 224 (1259)
T ss_pred cCCCceechh
Confidence 4444555554
No 256
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=88.20 E-value=5.2 Score=44.56 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=13.1
Q ss_pred hHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551 439 QLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 439 ~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
....++++..+++.++.++++++..++
T Consensus 502 k~~~~~~~~~~l~~~~~~~~eele~~q 528 (1317)
T KOG0612|consen 502 KLSEEEAKKRKLEALVRQLEEELEDAQ 528 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555555555555444
No 257
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.17 E-value=25 Score=33.73 Aligned_cols=244 Identities=12% Similarity=0.140 Sum_probs=102.6
Q ss_pred CCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEcc-CCceeeeccccccCCCccccCCCcCCC
Q 010551 11 PYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLR-SLAWSNLRLETELDADKTEDSGLLEVL 88 (507)
Q Consensus 11 ~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~-~~~W~~~~~~~~~~~~~~~~~~~~~~p 88 (507)
....|..+.. |....-..+.++ .+.-|++|-. .......+ -.+|......... +
T Consensus 4 ~~~~W~~v~l----~t~~~l~dV~F~d~~~G~~VG~~-------g~il~T~DGG~tW~~~~~~~~~-------------~ 59 (302)
T PF14870_consen 4 SGNSWQQVSL----PTDKPLLDVAFVDPNHGWAVGAY-------GTILKTTDGGKTWQPVSLDLDN-------------P 59 (302)
T ss_dssp SS--EEEEE-----S-SS-EEEEEESSSS-EEEEETT-------TEEEEESSTTSS-EE-----S---------------
T ss_pred cCCCcEEeec----CCCCceEEEEEecCCEEEEEecC-------CEEEEECCCCccccccccCCCc-------------c
Confidence 4678999983 333344444444 5678888752 12222222 2479887643211 1
Q ss_pred CCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCCCCcc
Q 010551 89 PPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRSRKLL 167 (507)
Q Consensus 89 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~ 167 (507)
......++...++..|++|-.. .+..-.-.-.+|+++... .+.+-..+.+..+ ++.++++|..
T Consensus 60 ~~~~l~~I~f~~~~g~ivG~~g-------~ll~T~DgG~tW~~v~l~--~~lpgs~~~i~~l~~~~~~l~~~~------- 123 (302)
T PF14870_consen 60 FDYHLNSISFDGNEGWIVGEPG-------LLLHTTDGGKTWERVPLS--SKLPGSPFGITALGDGSAELAGDR------- 123 (302)
T ss_dssp ---EEEEEEEETTEEEEEEETT-------EEEEESSTTSS-EE------TT-SS-EEEEEEEETTEEEEEETT-------
T ss_pred ceeeEEEEEecCCceEEEcCCc-------eEEEecCCCCCcEEeecC--CCCCCCeeEEEEcCCCcEEEEcCC-------
Confidence 1122334445688899887421 133332245579998642 2222233444444 4577776643
Q ss_pred CcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCcc
Q 010551 168 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH 247 (507)
Q Consensus 168 n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~ 247 (507)
..+++=.=.-.+|+.+... ..-....+....++.+++++..+ +-+...|+-...|... ..+..|.-.
T Consensus 124 G~iy~T~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs~~G-----~~~~s~~~G~~~w~~~----~r~~~~riq 190 (302)
T PF14870_consen 124 GAIYRTTDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVSSRG-----NFYSSWDPGQTTWQPH----NRNSSRRIQ 190 (302)
T ss_dssp --EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETTS-----SEEEEE-TT-SS-EEE----E--SSS-EE
T ss_pred CcEEEeCCCCCCeeEcccC----CcceeEeEEECCCCcEEEEECcc-----cEEEEecCCCccceEE----ccCccceeh
Confidence 2355444455689988642 12223334445677666666543 1223456767779875 334455555
Q ss_pred EEEEE-CCeEEEEeccCCCCCcceEEEEE--CCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCC
Q 010551 248 AGITI-DENWYIVGGGDNNNGCQETIVLN--MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN 318 (507)
Q Consensus 248 ~~~~~-~~~l~v~GG~~~~~~~~~~~~~d--~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~ 318 (507)
+|... ++.++++. .+. .+..-+ -...+|.+-. . |....++.+..+...+.+.+++.||..
T Consensus 191 ~~gf~~~~~lw~~~--~Gg----~~~~s~~~~~~~~w~~~~-~----~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 191 SMGFSPDGNLWMLA--RGG----QIQFSDDPDDGETWSEPI-I----PIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EEEE-TTS-EEEEE--TTT----EEEEEE-TTEEEEE---B------TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred hceecCCCCEEEEe--CCc----EEEEccCCCCcccccccc-C----CcccCceeeEEEEecCCCCEEEEeCCc
Confidence 55555 45676664 111 233333 3445677621 1 223335544445555556888888843
No 258
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.16 E-value=6.8 Score=40.33 Aligned_cols=10 Identities=30% Similarity=0.338 Sum_probs=4.2
Q ss_pred HHHHHHHhHH
Q 010551 470 EVQILRQQKS 479 (507)
Q Consensus 470 e~~~~~~~~~ 479 (507)
+++-|.+++.
T Consensus 205 ~~q~Lleel~ 214 (546)
T KOG0977|consen 205 RVQTLLEELA 214 (546)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 259
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=88.12 E-value=15 Score=32.05 Aligned_cols=49 Identities=6% Similarity=0.131 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhh
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ 439 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~ 439 (507)
...|.+++..+...+.+..+...+..+.+.+.+..+++.+.+.+++..+
T Consensus 42 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~ 90 (173)
T PRK13460 42 LKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAE 90 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666665555555555555666666666655555544443
No 260
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=88.11 E-value=9.3 Score=35.13 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhHHHH
Q 010551 466 TIENEVQILRQQKSAF 481 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~ 481 (507)
.|+.++.++..++++.
T Consensus 113 ~Leqelkr~KsELErs 128 (307)
T PF10481_consen 113 KLEQELKRCKSELERS 128 (307)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 261
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=88.10 E-value=24 Score=33.33 Aligned_cols=136 Identities=18% Similarity=0.175 Sum_probs=70.3
Q ss_pred CCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE----CCEEEEEeccCCCCCCcceEEEEECCCC
Q 010551 52 LSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW----GTKLLILGGHYKKSSDSMIVRFIDLETN 127 (507)
Q Consensus 52 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 127 (507)
.+.|..||..+++=+.+....- ..+..-++-.+-.+ +|.||+.=+ ++...--+|..|..++
T Consensus 77 YSHVH~yd~e~~~VrLLWkesi------------h~~~~WaGEVSdIlYdP~~D~LLlAR~---DGh~nLGvy~ldr~~g 141 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESI------------HDKTKWAGEVSDILYDPYEDRLLLARA---DGHANLGVYSLDRRTG 141 (339)
T ss_pred cceEEEEEcCCCeEEEEEeccc------------CCccccccchhheeeCCCcCEEEEEec---CCcceeeeEEEcccCC
Confidence 4679999999987554433221 11111122111111 567777533 2222445899999999
Q ss_pred cEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcE--EEeccC----CCCCCCCCCceEEEE
Q 010551 128 LCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW--DAVEVT----QTPPAPRYDHSAALH 201 (507)
Q Consensus 128 ~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W--~~~~~~----~~~p~~r~~~~~~~~ 201 (507)
.=+.+. .-|... .+.+.+..+| |......-.+.+.+||+.+++| +..+.. |.....+....++.+
T Consensus 142 ~~~~L~---~~ps~K---G~~~~D~a~F---~i~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ 212 (339)
T PF09910_consen 142 KAEKLS---SNPSLK---GTLVHDYACF---GINNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASA 212 (339)
T ss_pred ceeecc---CCCCcC---ceEeeeeEEE---eccccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEE
Confidence 888876 333331 1122222222 2222223357799999999999 444322 222223444455666
Q ss_pred cCCEEEEEcC
Q 010551 202 ANRYLIVFGG 211 (507)
Q Consensus 202 ~~~~l~v~GG 211 (507)
.++.+..++|
T Consensus 213 ynR~faF~rG 222 (339)
T PF09910_consen 213 YNRLFAFVRG 222 (339)
T ss_pred eeeEEEEEec
Confidence 5664444444
No 262
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=88.10 E-value=6.4 Score=34.61 Aligned_cols=6 Identities=17% Similarity=0.135 Sum_probs=3.0
Q ss_pred EEEECC
Q 010551 326 FVMRLK 331 (507)
Q Consensus 326 ~~~~~~ 331 (507)
.-||+.
T Consensus 38 i~Ydl~ 43 (195)
T PF12761_consen 38 IDYDLN 43 (195)
T ss_pred cCcccc
Confidence 345554
No 263
>PRK10780 periplasmic chaperone; Provisional
Probab=88.04 E-value=7.9 Score=33.47 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=5.1
Q ss_pred HhhccchhHHHhHH
Q 010551 421 EVNSTHSELSKELS 434 (507)
Q Consensus 421 ~~~~~~~e~~~el~ 434 (507)
..+.+++....+++
T Consensus 54 ~~q~el~~~~~elq 67 (165)
T PRK10780 54 GRASELQRMETDLQ 67 (165)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 264
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=88.02 E-value=4.1 Score=39.57 Aligned_cols=14 Identities=7% Similarity=0.157 Sum_probs=6.2
Q ss_pred HHHHHHhHHHHHHH
Q 010551 471 VQILRQQKSAFEQE 484 (507)
Q Consensus 471 ~~~~~~~~~~~~~~ 484 (507)
++.++.+.+++...
T Consensus 255 i~~l~~EveRlrt~ 268 (552)
T KOG2129|consen 255 IDKLQAEVERLRTY 268 (552)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444455444
No 265
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=87.95 E-value=15 Score=31.99 Aligned_cols=51 Identities=10% Similarity=0.162 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLV 441 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~ 441 (507)
...|..++..+...+........+....+.+.+..+++.+++.+++..+-.
T Consensus 45 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~ 95 (174)
T PRK07352 45 GKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAK 95 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777776666666666666666677777777766666555544443
No 266
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=87.88 E-value=3.6 Score=36.76 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=23.5
Q ss_pred hhHHHhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHH
Q 010551 438 GQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQE 484 (507)
Q Consensus 438 ~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~ 484 (507)
.++...+++..+++.++++.+.++...+ .++|+.+.++++-.++.++
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee 201 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEE 201 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3444455555555555555555554444 4444444444444444433
No 267
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.88 E-value=6.4 Score=38.87 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=16.0
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 010551 458 QKMLESSQTIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 458 ~~~~~~~~~le~e~~~~~~~~~~~~~~~~ 486 (507)
+++.+.+.+...+-.++|+|+.++...++
T Consensus 399 RKq~~DI~Kil~etreLqkq~ns~se~L~ 427 (521)
T KOG1937|consen 399 RKQEQDIVKILEETRELQKQENSESEALN 427 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555566666666665555543
No 268
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=87.84 E-value=14 Score=35.09 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=17.0
Q ss_pred hhhhhhhHHHHHHHHHHHHhHH-----HHHHHHHHHHHhH
Q 010551 444 RSRCFKLEAQIAELQKMLESSQ-----TIENEVQILRQQK 478 (507)
Q Consensus 444 ~~~~~~~e~~~~e~~~~~~~~~-----~le~e~~~~~~~~ 478 (507)
.+++.+++.+-.+++.+|.+.| +|.+++..+..++
T Consensus 112 ~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~ 151 (310)
T PF09755_consen 112 SRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEK 151 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344455554455555554433 5555555554433
No 269
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=87.78 E-value=16 Score=32.93 Aligned_cols=67 Identities=22% Similarity=0.250 Sum_probs=30.4
Q ss_pred HHHhhccchhHHHhHHHHHhhHHHhhhh---hhhhHHHHHHHHHHHHhHH-----HHHHHHHHHHHhHHHHHHHH
Q 010551 419 IDEVNSTHSELSKELSSVQGQLVAERSR---CFKLEAQIAELQKMLESSQ-----TIENEVQILRQQKSAFEQEM 485 (507)
Q Consensus 419 l~~~~~~~~e~~~el~~~~~~~~~~~~~---~~~~e~~~~e~~~~~~~~~-----~le~e~~~~~~~~~~~~~~~ 485 (507)
+..++.++-+.++++..++.+++.++.- -...+.+++.+++++..++ .+.+...+..+++..+++++
T Consensus 49 ~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~ 123 (206)
T PF14988_consen 49 TSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEA 123 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444221 1233444555555554443 33344445555555666655
No 270
>PF14282 FlxA: FlxA-like protein
Probab=87.72 E-value=2.5 Score=33.46 Aligned_cols=15 Identities=40% Similarity=0.439 Sum_probs=5.9
Q ss_pred hhhHHHHHHHHHHHH
Q 010551 448 FKLEAQIAELQKMLE 462 (507)
Q Consensus 448 ~~~e~~~~e~~~~~~ 462 (507)
+.|+.+|+.++.++.
T Consensus 54 q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 54 QLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444333333
No 271
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.54 E-value=8.2 Score=42.19 Aligned_cols=7 Identities=29% Similarity=0.392 Sum_probs=3.8
Q ss_pred EEEccCC
Q 010551 312 VAFGGYN 318 (507)
Q Consensus 312 ~v~GG~~ 318 (507)
.+.||..
T Consensus 660 tlTGGs~ 666 (1174)
T KOG0933|consen 660 TLTGGSR 666 (1174)
T ss_pred cccCCCC
Confidence 3457754
No 272
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=87.48 E-value=6.9 Score=36.47 Aligned_cols=46 Identities=13% Similarity=0.284 Sum_probs=23.5
Q ss_pred HHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhH
Q 010551 406 TEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE 451 (507)
Q Consensus 406 ~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e 451 (507)
.....+.+++++.+..+..+...++..++..+.+++..++|++-|+
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555555555555555444
No 273
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=87.48 E-value=6.5 Score=37.92 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccc
Q 010551 467 IENEVQILRQQKSAFEQEMERATSVQ 492 (507)
Q Consensus 467 le~e~~~~~~~~~~~~~~~~~~~~~~ 492 (507)
.++.++-.+-++.++|-++++++-.|
T Consensus 351 IqEalEscqtrisKlEl~qq~qqv~Q 376 (455)
T KOG3850|consen 351 IQEALESCQTRISKLELQQQQQQVVQ 376 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555444333333
No 274
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=87.43 E-value=4.9 Score=47.20 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=14.6
Q ss_pred HhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHH
Q 010551 421 EVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ 458 (507)
Q Consensus 421 ~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~ 458 (507)
.+.+++++.+.+++..+.++...++++..++.++++++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~ 317 (1353)
T TIGR02680 280 QLSRDLGRARDELETAREEERELDARTEALEREADALR 317 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334333333333333333333333333
No 275
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.31 E-value=8.5 Score=41.70 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=7.1
Q ss_pred ECCEEEEEcC
Q 010551 36 FDQKLYIVGG 45 (507)
Q Consensus 36 ~~~~iyi~GG 45 (507)
.++.||+|-+
T Consensus 40 ~d~~L~vWd~ 49 (717)
T PF10168_consen 40 RDGDLFVWDS 49 (717)
T ss_pred eCCEEEEEEC
Confidence 3777777766
No 276
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=87.23 E-value=4.8 Score=41.19 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=26.9
Q ss_pred hhhhhhhHHHHHHHHHHHHhH-------HHHHHHHHHHHHhHHHHHHHHHHhhcccccCCCceeeee
Q 010551 444 RSRCFKLEAQIAELQKMLESS-------QTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWI 503 (507)
Q Consensus 444 ~~~~~~~e~~~~e~~~~~~~~-------~~le~e~~~~~~~~~~~~~~~~~~~~~~~q~~~g~~~~~ 503 (507)
+.++..++.++.+.++++... ..|+++.+-.++..+.+.+.+++++. +.......|+=|
T Consensus 317 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l-~~~~~~~~~~Vi 382 (444)
T TIGR03017 317 KQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTRI-EAQSNQTDISIL 382 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCceEee
Confidence 344444444555444444433 34444444444444455555554442 233344455543
No 277
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=87.17 E-value=10 Score=31.66 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 010551 466 TIENEVQILRQQKSAFEQEMERA 488 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~~~~~~~ 488 (507)
++++++..++++++.+.+.++++
T Consensus 112 ~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 112 KLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555443
No 278
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=87.11 E-value=14 Score=30.24 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=8.3
Q ss_pred HHHhhhhhhhhHHHHHHHHHHH
Q 010551 440 LVAERSRCFKLEAQIAELQKML 461 (507)
Q Consensus 440 ~~~~~~~~~~~e~~~~e~~~~~ 461 (507)
+++..+..+..+.++.+.+..+
T Consensus 77 lDe~~ei~~~i~~eV~~v~~dv 98 (126)
T PF07889_consen 77 LDEQKEISKQIKDEVTEVREDV 98 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhhH
Confidence 3333333333333444433333
No 279
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=86.94 E-value=3.4 Score=36.61 Aligned_cols=8 Identities=38% Similarity=0.601 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 010551 453 QIAELQKM 460 (507)
Q Consensus 453 ~~~e~~~~ 460 (507)
++.+++.+
T Consensus 118 ~~~~l~~e 125 (188)
T PF03962_consen 118 ELKELKKE 125 (188)
T ss_pred HHHHHHHH
Confidence 33333333
No 280
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.89 E-value=8.2 Score=42.03 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 010551 466 TIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~~~~~ 486 (507)
++.++..++..++..+++++.
T Consensus 353 ~l~~ee~~~~~rl~~l~~~~~ 373 (1200)
T KOG0964|consen 353 SLVDEEKRLKKRLAKLEQKQR 373 (1200)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 444555555555555555543
No 281
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=86.84 E-value=3.9 Score=39.11 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=3.7
Q ss_pred HHHHHHHhHH
Q 010551 470 EVQILRQQKS 479 (507)
Q Consensus 470 e~~~~~~~~~ 479 (507)
+.++++...+
T Consensus 141 q~~qLe~d~q 150 (319)
T PF09789_consen 141 QIEQLERDLQ 150 (319)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 282
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=86.65 E-value=6 Score=30.71 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 010551 466 TIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~~~~~ 486 (507)
.|.=..+||-++.+.+..+++
T Consensus 51 SL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 51 SLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443
No 283
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=86.47 E-value=19 Score=31.89 Aligned_cols=16 Identities=19% Similarity=0.580 Sum_probs=6.8
Q ss_pred HHHHHHHhHHHHHHHH
Q 010551 470 EVQILRQQKSAFEQEM 485 (507)
Q Consensus 470 e~~~~~~~~~~~~~~~ 485 (507)
+++.+.++.+++..++
T Consensus 171 ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 171 EIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 284
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=86.46 E-value=15 Score=31.83 Aligned_cols=28 Identities=11% Similarity=-0.009 Sum_probs=11.7
Q ss_pred HHHhhccchhHHHhHHHHHhhHHHhhhh
Q 010551 419 IDEVNSTHSELSKELSSVQGQLVAERSR 446 (507)
Q Consensus 419 l~~~~~~~~e~~~el~~~~~~~~~~~~~ 446 (507)
++.+-.++..++..-+..+.+++++++-
T Consensus 50 lQ~hl~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 50 LQQHLNEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334434433344444444444443
No 285
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.41 E-value=8.1 Score=42.07 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=42.1
Q ss_pred hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHH----HHHHHHHHhHHHHHHHHH
Q 010551 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE----NEVQILRQQKSAFEQEME 486 (507)
Q Consensus 411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le----~e~~~~~~~~~~~~~~~~ 486 (507)
+.+.++.+++.++.++++...+++.+...+...+.+..++-....++++++.+.+... +|..+++..+..+++.+.
T Consensus 412 ~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~ 491 (1200)
T KOG0964|consen 412 QENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLS 491 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555455555555555555555555554222 344455555555566655
Q ss_pred Hhhcc
Q 010551 487 RATSV 491 (507)
Q Consensus 487 ~~~~~ 491 (507)
.++..
T Consensus 492 ~~~~~ 496 (1200)
T KOG0964|consen 492 RAEKN 496 (1200)
T ss_pred HHHHH
Confidence 44433
No 286
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=86.40 E-value=7.7 Score=34.33 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=27.8
Q ss_pred HHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHH
Q 010551 430 SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 430 ~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~~~~ 487 (507)
++++.+...++.+..+...++++.+.+++++.+.+. ...+++.++....+.+.++++.
T Consensus 116 e~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 116 EKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444555555566666666555533332 3334455554444455554443
No 287
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=86.34 E-value=33 Score=33.11 Aligned_cols=156 Identities=11% Similarity=0.042 Sum_probs=81.3
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCC-
Q 010551 116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR- 193 (507)
Q Consensus 116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r- 193 (507)
.+.+..|++..+.-+...+.--.|..-.-|.+.--++ .+|++.=.++ .-+++.||...++...+.+...+|..-
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~s----tV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNS----TVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCC----EEEEEEEcCCCceEEEeeeeccCccccC
Confidence 5668999998887666543312222222233333333 5677765543 335777888888888887665454332
Q ss_pred --CCceEEEE--cCCEEEEEcCCCCCCCCCcEEEEEC--CCCcEEeccc---CCCCCCCCCccEEEEECCeEEEEeccCC
Q 010551 194 --YDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDL--QTNEWSQPEI---KGDLVTGRAGHAGITIDENWYIVGGGDN 264 (507)
Q Consensus 194 --~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~--~~~~W~~~~~---~~~~p~~r~~~~~~~~~~~l~v~GG~~~ 264 (507)
...+++.+ ++++||+. +...+.|..|.+ .+++-..+.. -+.. ||. |.+..-++.|++. +..+
T Consensus 242 g~~~~aaIhis~dGrFLYas-----NRg~dsI~~f~V~~~~g~L~~~~~~~teg~~--PR~-F~i~~~g~~Liaa-~q~s 312 (346)
T COG2706 242 GTNWAAAIHISPDGRFLYAS-----NRGHDSIAVFSVDPDGGKLELVGITPTEGQF--PRD-FNINPSGRFLIAA-NQKS 312 (346)
T ss_pred CCCceeEEEECCCCCEEEEe-----cCCCCeEEEEEEcCCCCEEEEEEEeccCCcC--Ccc-ceeCCCCCEEEEE-ccCC
Confidence 22223222 45667773 333456666654 4444333221 2332 343 2323333444444 3333
Q ss_pred CCCcceEEEEECCCCcEEEecc
Q 010551 265 NNGCQETIVLNMTKLAWSILTS 286 (507)
Q Consensus 265 ~~~~~~~~~~d~~~~~W~~v~~ 286 (507)
+ .-.++..|.+++.-+.+..
T Consensus 313 d--~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 313 D--NITVFERDKETGRLTLLGR 332 (346)
T ss_pred C--cEEEEEEcCCCceEEeccc
Confidence 2 2456677888888777644
No 288
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=86.23 E-value=2.8 Score=43.76 Aligned_cols=19 Identities=11% Similarity=0.352 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 010551 466 TIENEVQILRQQKSAFEQE 484 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~~~ 484 (507)
+++.+.++++++...+++.
T Consensus 241 ~l~~~~~~~~~~~~~lk~a 259 (555)
T TIGR03545 241 DLQNDKKQLKADLAELKKA 259 (555)
T ss_pred HHHHhHHHHHHHHHHHHhc
Confidence 4444444444444444333
No 289
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=86.09 E-value=8.7 Score=28.12 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=17.4
Q ss_pred HHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551 420 DEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 460 (507)
Q Consensus 420 ~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~ 460 (507)
.+...++.++..+-+............+.+|...+.+.+.+
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~ 48 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQ 48 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333333343333333333334444444555444444443
No 290
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=86.08 E-value=13 Score=33.86 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELS 434 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~ 434 (507)
+..++......+..+.........+++++++.+...+++++..+
T Consensus 32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~ 75 (221)
T PF04012_consen 32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAE 75 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555556666667777777776666655533
No 291
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.07 E-value=5.9 Score=46.61 Aligned_cols=8 Identities=38% Similarity=0.451 Sum_probs=3.5
Q ss_pred CEEEEEcC
Q 010551 38 QKLYIVGG 45 (507)
Q Consensus 38 ~~iyi~GG 45 (507)
..++++-|
T Consensus 28 ~~~~~I~G 35 (1311)
T TIGR00606 28 SPLTILVG 35 (1311)
T ss_pred cceEEEEC
Confidence 33444444
No 292
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=86.06 E-value=19 Score=33.61 Aligned_cols=45 Identities=9% Similarity=0.209 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSS 435 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~ 435 (507)
...+.+++..+...+........+.++..++.+.++++.+++.++
T Consensus 31 ~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ 75 (250)
T PRK14474 31 IQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRAS 75 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544445555555555555555444433
No 293
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=86.03 E-value=19 Score=33.86 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 010551 466 TIENEVQILRQQKSAFEQEMERA 488 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~~~~~~~ 488 (507)
.++..+.|++.+---+.++|+++
T Consensus 218 s~eERL~QlqsEN~LLrQQLddA 240 (305)
T PF14915_consen 218 SLEERLSQLQSENMLLRQQLDDA 240 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555443
No 294
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=86.02 E-value=13 Score=34.49 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=22.3
Q ss_pred hhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH
Q 010551 422 VNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 464 (507)
Q Consensus 422 ~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~ 464 (507)
++.+.+..++.+...+.+++.+++.+.+.|..++|.++++...
T Consensus 191 ~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~ 233 (269)
T PF05278_consen 191 REEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEM 233 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555555554433
No 295
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=85.91 E-value=21 Score=31.44 Aligned_cols=47 Identities=9% Similarity=0.161 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhh
Q 010551 393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ 439 (507)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~ 439 (507)
.|.+++..+...+.+..+...+..+.+.+.+.++++.+.+-+++..+
T Consensus 55 ~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~ 101 (184)
T PRK13455 55 MLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAA 101 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556655555555555555566666666666665555554443
No 296
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=85.82 E-value=30 Score=32.21 Aligned_cols=164 Identities=16% Similarity=0.080 Sum_probs=87.2
Q ss_pred CCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCcee---eeccccccCCCccccCCCcCCCCCccce---eEEE
Q 010551 25 PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWS---NLRLETELDADKTEDSGLLEVLPPMSDH---CMVK 98 (507)
Q Consensus 25 p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~~~~~~~~~~~~~~~~~p~~r~~~---~~~~ 98 (507)
|.+-.|.+.++.++.||.--. .++.+..||+.+.+=. .++..... ...|-...++ -.++
T Consensus 66 p~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~v~~~~~L~~A~~~----------n~~~y~~~~~t~iD~Av 130 (250)
T PF02191_consen 66 PYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRSVVARRELPGAGYN----------NRFPYYWSGYTDIDFAV 130 (250)
T ss_pred eceeccCCeEEECCcEEEEec-----CCceEEEEECcCCcEEEEEECCccccc----------cccceecCCCceEEEEE
Confidence 334445555566666665432 3678999999998755 33322110 0112122222 2333
Q ss_pred ECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCC
Q 010551 99 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM 178 (507)
Q Consensus 99 ~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~ 178 (507)
-++-|+++=....... .-.+-..|+.+..-.+-=.+ ..+.+..+.+ ..+=|.||+....+... ..-.+.||+.++
T Consensus 131 DE~GLWvIYat~~~~g-~ivvskld~~tL~v~~tw~T-~~~k~~~~na-FmvCGvLY~~~s~~~~~--~~I~yafDt~t~ 205 (250)
T PF02191_consen 131 DENGLWVIYATEDNNG-NIVVSKLDPETLSVEQTWNT-SYPKRSAGNA-FMVCGVLYATDSYDTRD--TEIFYAFDTYTG 205 (250)
T ss_pred cCCCEEEEEecCCCCC-cEEEEeeCcccCceEEEEEe-ccCchhhcce-eeEeeEEEEEEECCCCC--cEEEEEEECCCC
Confidence 3555666544332221 23466677776643322111 2344444433 33346777776665432 345788999988
Q ss_pred cEEEeccCCCCCCCCCCceEEEEc--CCEEEEEc
Q 010551 179 TWDAVEVTQTPPAPRYDHSAALHA--NRYLIVFG 210 (507)
Q Consensus 179 ~W~~~~~~~~~p~~r~~~~~~~~~--~~~l~v~G 210 (507)
+=..+.. +.+.+-..++++.++ ++.||++-
T Consensus 206 ~~~~~~i--~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 206 KEEDVSI--PFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred ceeceee--eeccccCceEeeeECCCCCeEEEEE
Confidence 7766654 355555566666664 56788864
No 297
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.74 E-value=12 Score=39.99 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=26.6
Q ss_pred HHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHH
Q 010551 408 VRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI 454 (507)
Q Consensus 408 ~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~ 454 (507)
...+.+.+++...+++.++++++.++++...+.+++++....++.++
T Consensus 669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455556666666666666666666666555555555554444433
No 298
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=85.71 E-value=16 Score=30.55 Aligned_cols=56 Identities=4% Similarity=0.092 Sum_probs=30.1
Q ss_pred hhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551 410 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 410 ~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
....+++..++...++.+.......++..+.+..++.+.+++.++.+.++..+..+
T Consensus 60 ~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~ 115 (139)
T PF05615_consen 60 FSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKE 115 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555555555555444444444
No 299
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=85.64 E-value=14 Score=38.69 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHhHH--------HHHHHHHHHHHhHHHH
Q 010551 448 FKLEAQIAELQKMLESSQ--------TIENEVQILRQQKSAF 481 (507)
Q Consensus 448 ~~~e~~~~e~~~~~~~~~--------~le~e~~~~~~~~~~~ 481 (507)
+.+=+++.++++.|+..+ .+--|+.+++++++..
T Consensus 583 ~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaa 624 (961)
T KOG4673|consen 583 SMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAA 624 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555544433 2223455555555433
No 300
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=85.45 E-value=3.6 Score=40.42 Aligned_cols=55 Identities=25% Similarity=0.310 Sum_probs=36.5
Q ss_pred hHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHH
Q 010551 405 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK 459 (507)
Q Consensus 405 ~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~ 459 (507)
+.....+..-++..+++++.++++.+++|+..+.++...++++..++.+.++..+
T Consensus 209 Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~ 263 (344)
T PF12777_consen 209 YYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQK 263 (344)
T ss_dssp HHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666777777777777777777777777777777766666655554433
No 301
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.45 E-value=5.2 Score=34.76 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=7.7
Q ss_pred hhhhhHHHHHHHHHHHHhH
Q 010551 446 RCFKLEAQIAELQKMLESS 464 (507)
Q Consensus 446 ~~~~~e~~~~e~~~~~~~~ 464 (507)
.+.+++.++.+++.+|..+
T Consensus 117 ~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 117 EIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 302
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=85.36 E-value=18 Score=35.90 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhHHHHH
Q 010551 466 TIENEVQILRQQKSAFE 482 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~ 482 (507)
+++.-++-.+-++.++|
T Consensus 302 di~E~~Es~qtRisklE 318 (395)
T PF10267_consen 302 DIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555566666666
No 303
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=85.34 E-value=9.8 Score=26.57 Aligned_cols=13 Identities=23% Similarity=0.094 Sum_probs=4.6
Q ss_pred HHhhHHHhhhhhh
Q 010551 436 VQGQLVAERSRCF 448 (507)
Q Consensus 436 ~~~~~~~~~~~~~ 448 (507)
++..+...+.+++
T Consensus 23 vk~~n~~~e~kLq 35 (61)
T PF08826_consen 23 VKSANLAFESKLQ 35 (61)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 304
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=85.31 E-value=0.26 Score=49.91 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHhhccchhHHHhHH
Q 010551 411 ENSRFREKIDEVNSTHSELSKELS 434 (507)
Q Consensus 411 ~~~~l~~~l~~~~~~~~e~~~el~ 434 (507)
|+..|++.|....+.++|.|++|.
T Consensus 377 EI~~LkErL~~S~rkLeEyErrLl 400 (495)
T PF12004_consen 377 EIQSLKERLRMSHRKLEEYERRLL 400 (495)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 305
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.28 E-value=44 Score=33.58 Aligned_cols=173 Identities=18% Similarity=0.172 Sum_probs=86.9
Q ss_pred ECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCC
Q 010551 36 FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSD 115 (507)
Q Consensus 36 ~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~ 115 (507)
.++.++++|+.+. .+-.+|..+.. ......+ +.-....-++...+++|++-||++..
T Consensus 121 ~d~t~l~s~sDd~-----v~k~~d~s~a~-v~~~l~~--------------htDYVR~g~~~~~~~hivvtGsYDg~--- 177 (487)
T KOG0310|consen 121 QDNTMLVSGSDDK-----VVKYWDLSTAY-VQAELSG--------------HTDYVRCGDISPANDHIVVTGSYDGK--- 177 (487)
T ss_pred cCCeEEEecCCCc-----eEEEEEcCCcE-EEEEecC--------------CcceeEeeccccCCCeEEEecCCCce---
Confidence 4788888887432 24455555544 2222221 11122333455568899999998764
Q ss_pred cceEEEEECCCC-cEEEeecCCCCCCCCcCcEEEEE-C-CEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCC
Q 010551 116 SMIVRFIDLETN-LCGVMETSGKVPVTRGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP 192 (507)
Q Consensus 116 ~~~~~~yd~~t~-~W~~~~~~g~~p~~r~~~~~~~~-~-~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~ 192 (507)
+-.||+.+. .|..--.- ..|.. .++.+ + ..|...|| |.+-++|+.++.= ++..
T Consensus 178 ---vrl~DtR~~~~~v~elnh-g~pVe----~vl~lpsgs~iasAgG--------n~vkVWDl~~G~q--------ll~~ 233 (487)
T KOG0310|consen 178 ---VRLWDTRSLTSRVVELNH-GCPVE----SVLALPSGSLIASAGG--------NSVKVWDLTTGGQ--------LLTS 233 (487)
T ss_pred ---EEEEEeccCCceeEEecC-CCcee----eEEEcCCCCEEEEcCC--------CeEEEEEecCCce--------ehhh
Confidence 777887776 44322111 11211 22222 2 34444555 4577777764331 1212
Q ss_pred CCCc-----eEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCC
Q 010551 193 RYDH-----SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNN 265 (507)
Q Consensus 193 r~~~-----~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~ 265 (507)
+..| ++....++.-++-||.+. .+-+||+. .|..+.. -..|.|.- ++++. ++..+++|+.++.
T Consensus 234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd~t--~~Kvv~s-~~~~~pvL--siavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 234 MFNHNKTVTCLRLASDSTRLLSGSLDR-----HVKVFDTT--NYKVVHS-WKYPGPVL--SIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred hhcccceEEEEEeecCCceEeeccccc-----ceEEEEcc--ceEEEEe-eeccccee--eEEecCCCceEEEecccce
Confidence 2212 233344555677777654 46788844 3444321 12222322 22222 6788888886653
No 306
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=85.25 E-value=21 Score=29.81 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHh
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~ 438 (507)
...|.+++..+...+........+....+.+.+..+++.+.+-..+..
T Consensus 31 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~ 78 (140)
T PRK07353 31 GKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIA 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666656666666666666666666555444443
No 307
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=85.17 E-value=4.7 Score=37.14 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=10.0
Q ss_pred HHHHHHHhHHHHHHHHHHh
Q 010551 470 EVQILRQQKSAFEQEMERA 488 (507)
Q Consensus 470 e~~~~~~~~~~~~~~~~~~ 488 (507)
.+...+++++.+.+-.|=+
T Consensus 153 DINiQN~KLEsLLqsMElA 171 (305)
T PF15290_consen 153 DINIQNKKLESLLQSMELA 171 (305)
T ss_pred hhhhhHhHHHHHHHHHHHH
Confidence 3444455566666655533
No 308
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=85.12 E-value=23 Score=30.19 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL 440 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~ 440 (507)
...+..++..+...+........+.+..+.+.+..+++.+.+..++..+.
T Consensus 30 ~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a 79 (156)
T PRK05759 30 MKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQA 79 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666666666666666666666666666555554433
No 309
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.10 E-value=28 Score=31.88 Aligned_cols=38 Identities=21% Similarity=0.126 Sum_probs=16.9
Q ss_pred HHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHH
Q 010551 418 KIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA 455 (507)
Q Consensus 418 ~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~ 455 (507)
-|++...+.+++..|.....++|.+....+..+|..+.
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIk 70 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIK 70 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 310
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=85.09 E-value=24 Score=30.52 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHh
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~ 438 (507)
...+.+++..+...+........+....+.+.+..+.+.+++-+++..
T Consensus 48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~ 95 (167)
T PRK08475 48 KNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVE 95 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666665555555655566666666665555444443
No 311
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=85.06 E-value=15 Score=40.69 Aligned_cols=28 Identities=11% Similarity=0.285 Sum_probs=14.9
Q ss_pred HHHhhhhhhHHHHHHhhccchhHHHhHH
Q 010551 407 EVRTENSRFREKIDEVNSTHSELSKELS 434 (507)
Q Consensus 407 ~~~~~~~~l~~~l~~~~~~~~e~~~el~ 434 (507)
......+++..+++.++.++.+....+.
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555556666555555544443
No 312
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.03 E-value=45 Score=33.50 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=45.2
Q ss_pred cEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc-----EEecccCCCCCCCCCcc-EEEEE
Q 010551 179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE-----WSQPEIKGDLVTGRAGH-AGITI 252 (507)
Q Consensus 179 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-----W~~~~~~~~~p~~r~~~-~~~~~ 252 (507)
.|+.+.. +.++...++....++.+++.|..+ .++.-+-.... |..+ +.+..+... ++...
T Consensus 271 ~W~~~~~----~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~f~~~----~~~~~~~~l~~v~~~ 336 (398)
T PLN00033 271 YWQPHNR----ASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFDFEEA----DIKSRGFGILDVGYR 336 (398)
T ss_pred ceEEecC----CCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccceeec----ccCCCCcceEEEEEc
Confidence 4898863 444555555555667688877543 23333323333 4442 222223222 23333
Q ss_pred -CCeEEEEeccCCCCCcceEEEEECCCCcEEEecc
Q 010551 253 -DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 286 (507)
Q Consensus 253 -~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~ 286 (507)
++.++++|... -++.-...-.+|+.+..
T Consensus 337 ~d~~~~a~G~~G------~v~~s~D~G~tW~~~~~ 365 (398)
T PLN00033 337 SKKEAWAAGGSG------ILLRSTDGGKSWKRDKG 365 (398)
T ss_pred CCCcEEEEECCC------cEEEeCCCCcceeEccc
Confidence 45787777532 13444455678998753
No 313
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=85.01 E-value=22 Score=33.11 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ 437 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~ 437 (507)
...+.+++..+...+........+....+.+.+..+++.+++.+++.
T Consensus 31 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~ 77 (246)
T TIGR03321 31 LDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLL 77 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566555555555555555555555555555544444433
No 314
>PF15556 Zwint: ZW10 interactor
Probab=84.88 E-value=26 Score=30.72 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=4.6
Q ss_pred HHHHHHHhHHHH
Q 010551 470 EVQILRQQKSAF 481 (507)
Q Consensus 470 e~~~~~~~~~~~ 481 (507)
+++.+.+++..+
T Consensus 156 eLe~l~qeL~~l 167 (252)
T PF15556_consen 156 ELERLYQELGTL 167 (252)
T ss_pred HHHHHHHHHHHH
Confidence 333344433333
No 315
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.88 E-value=13 Score=34.58 Aligned_cols=11 Identities=0% Similarity=0.169 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 010551 391 IDAIKEDKRVL 401 (507)
Q Consensus 391 ~~~l~~~~~~~ 401 (507)
++.+...+.+.
T Consensus 321 qet~eaKr~e~ 331 (406)
T KOG3859|consen 321 QETYEAKRNEF 331 (406)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 316
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=84.87 E-value=40 Score=32.76 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=58.4
Q ss_pred CCCCCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCC----CCCccCCceEEEEccCCc--eee-ecccc
Q 010551 1 MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGS----RNGRFLSDVQVFDLRSLA--WSN-LRLET 72 (507)
Q Consensus 1 ~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~----~~~~~~~~~~~~d~~~~~--W~~-~~~~~ 72 (507)
|.+.+++||..+.+-.=. .+.+-.++.+..- +..+|+..-+ ..+..++-+.+||+.|.. ++. +|..+
T Consensus 15 ~~~rv~viD~d~~k~lGm-----i~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~ 89 (342)
T PF06433_consen 15 MTSRVYVIDADSGKLLGM-----IDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP 89 (342)
T ss_dssp SSEEEEEEETTTTEEEEE-----EEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred ccceEEEEECCCCcEEEE-----eecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence 345678888888775433 3334444444333 5678876642 234556678999999874 433 22210
Q ss_pred ccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551 73 ELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 73 ~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 131 (507)
.. -..+.+...++..-|..+||+ -. .+..++-+-|+..++.-.
T Consensus 90 R~-----------~~~~~~~~~~ls~dgk~~~V~-N~----TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 90 RA-----------QVVPYKNMFALSADGKFLYVQ-NF----TPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp B-------------BS--GGGEEE-TTSSEEEEE-EE----SSSEEEEEEETTTTEEEE
T ss_pred hh-----------eecccccceEEccCCcEEEEE-cc----CCCCeEEEEECCCCceee
Confidence 00 001112222222224556666 11 236689999999998654
No 317
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=84.78 E-value=21 Score=32.52 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhHH
Q 010551 466 TIENEVQILRQQKS 479 (507)
Q Consensus 466 ~le~e~~~~~~~~~ 479 (507)
.|+.++.++..+++
T Consensus 124 ~Le~Ki~e~~~~~~ 137 (225)
T COG1842 124 ALEQKIAELRAKKE 137 (225)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 318
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=84.71 E-value=3.8 Score=38.45 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=44.7
Q ss_pred hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHH
Q 010551 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE 468 (507)
Q Consensus 411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le 468 (507)
+...|+-.|++.+.++.+..++-++...+++.++..+.-|+.+.+|+++.+++.++|-
T Consensus 148 qVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeli 205 (405)
T KOG2010|consen 148 QVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELI 205 (405)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777778888888888888888888888888888888888888877766443
No 319
>PLN00181 protein SPA1-RELATED; Provisional
Probab=84.70 E-value=71 Score=35.53 Aligned_cols=101 Identities=11% Similarity=0.130 Sum_probs=51.1
Q ss_pred CEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCC
Q 010551 101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM 178 (507)
Q Consensus 101 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~ 178 (507)
+..++.|+.+ ..+.+||..++.-.... .+ ....-.+++.. ++.+++.||.++ .+.+||+.+.
T Consensus 545 ~~~las~~~D------g~v~lWd~~~~~~~~~~-~~---H~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~ 608 (793)
T PLN00181 545 KSQVASSNFE------GVVQVWDVARSQLVTEM-KE---HEKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQG 608 (793)
T ss_pred CCEEEEEeCC------CeEEEEECCCCeEEEEe-cC---CCCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCC
Confidence 3455555542 24888898876532221 01 11111222222 456777787653 4888888765
Q ss_pred cEE-EeccCCCCCCCCCCceEEEE--cCCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010551 179 TWD-AVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTN 229 (507)
Q Consensus 179 ~W~-~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~ 229 (507)
.-. .+.. ......+.+ .++.+++.|+.+ +.+.+||+.+.
T Consensus 609 ~~~~~~~~-------~~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~~~~ 650 (793)
T PLN00181 609 VSIGTIKT-------KANICCVQFPSESGRSLAFGSAD-----HKVYYYDLRNP 650 (793)
T ss_pred cEEEEEec-------CCCeEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCC
Confidence 422 2211 111122222 245577777654 36889998654
No 320
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=84.68 E-value=5.7 Score=32.38 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=6.3
Q ss_pred hHHHHHHhhccchhH
Q 010551 415 FREKIDEVNSTHSEL 429 (507)
Q Consensus 415 l~~~l~~~~~~~~e~ 429 (507)
|.+.|+.+...+++.
T Consensus 66 LsqRId~vd~klDe~ 80 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQ 80 (126)
T ss_pred HHHHHHHHHhhHHHH
Confidence 334444444444433
No 321
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=84.57 E-value=19 Score=28.91 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 010551 466 TIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~~~~~ 486 (507)
.|++..+.++++++.+...+.
T Consensus 88 tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 88 TLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 322
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=84.55 E-value=19 Score=32.72 Aligned_cols=29 Identities=0% Similarity=0.227 Sum_probs=14.0
Q ss_pred hhHHHHhhhhhhHHHHHHhhccchhHHHh
Q 010551 404 SLTEVRTENSRFREKIDEVNSTHSELSKE 432 (507)
Q Consensus 404 ~~~~~~~~~~~l~~~l~~~~~~~~e~~~e 432 (507)
.+.........+++++.+.....++++..
T Consensus 46 ~lA~~~a~~k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 46 TSARTIADKKELERRVSRLEAQVADWQEK 74 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444555555555555555433
No 323
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.45 E-value=6.8 Score=34.05 Aligned_cols=13 Identities=8% Similarity=0.266 Sum_probs=5.1
Q ss_pred hhhhhHHHHHHhh
Q 010551 411 ENSRFREKIDEVN 423 (507)
Q Consensus 411 ~~~~l~~~l~~~~ 423 (507)
+...|+.++..+.
T Consensus 94 ~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 94 EVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHh
Confidence 3333443343333
No 324
>PRK11519 tyrosine kinase; Provisional
Probab=84.43 E-value=8.3 Score=42.19 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010551 450 LEAQIAELQKMLESSQTIENEVQILRQQKS 479 (507)
Q Consensus 450 ~e~~~~e~~~~~~~~~~le~e~~~~~~~~~ 479 (507)
+++++.+++.+...+.+.+++..+++++.+
T Consensus 351 L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~ 380 (719)
T PRK11519 351 LEDEKAKLNGRVTAMPKTQQEIVRLTRDVE 380 (719)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 333444444444444344444444444443
No 325
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=84.39 E-value=8.6 Score=34.03 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=37.2
Q ss_pred HHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHH----HHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010551 419 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ----KMLESSQTIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 419 l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~----~~~~~~~~le~e~~~~~~~~~~~~~~~~~ 487 (507)
...++.++.+.+.++.....+...++.++.+++++.+.+. ....++..++...+.+.++....+.+.+.
T Consensus 112 ~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 112 RKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334443333444444444455555555554433333 22344457778888888888877777654
No 326
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=84.31 E-value=17 Score=32.21 Aligned_cols=8 Identities=50% Similarity=0.733 Sum_probs=2.9
Q ss_pred hhHHHHHH
Q 010551 449 KLEAQIAE 456 (507)
Q Consensus 449 ~~e~~~~e 456 (507)
+|+.++.+
T Consensus 138 ~L~~~~~~ 145 (189)
T PF10211_consen 138 ELEKQVQE 145 (189)
T ss_pred HHHHHHHH
Confidence 33333333
No 327
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=84.26 E-value=17 Score=36.12 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=5.2
Q ss_pred hhHHHHhhhhhhH
Q 010551 404 SLTEVRTENSRFR 416 (507)
Q Consensus 404 ~~~~~~~~~~~l~ 416 (507)
.+++.+.+++.|+
T Consensus 405 ~LqEsr~eKetLq 417 (527)
T PF15066_consen 405 HLQESRNEKETLQ 417 (527)
T ss_pred HHHHHHhhHHHHH
Confidence 3334444444443
No 328
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=84.21 E-value=17 Score=33.76 Aligned_cols=44 Identities=11% Similarity=0.182 Sum_probs=22.2
Q ss_pred cchhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhH
Q 010551 386 DVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL 429 (507)
Q Consensus 386 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~ 429 (507)
+.+..++++..-+.-+++.+....-...+|..++...-+.++..
T Consensus 224 DWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SR 267 (384)
T KOG0972|consen 224 DWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASR 267 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666555555544444444555554444444444333
No 329
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=84.18 E-value=9.8 Score=38.66 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=8.5
Q ss_pred HhhHHHhhhhhhhhHHHHHHHHH
Q 010551 437 QGQLVAERSRCFKLEAQIAELQK 459 (507)
Q Consensus 437 ~~~~~~~~~~~~~~e~~~~e~~~ 459 (507)
+.+++.++.....|+.+-|.+++
T Consensus 645 Ree~eRl~~erlrle~qRQrLER 667 (940)
T KOG4661|consen 645 REELERLKAERLRLERQRQRLER 667 (940)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 330
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.06 E-value=5.6 Score=35.62 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=8.6
Q ss_pred HhhHHHhhhhhhhhHHHHHHHHH
Q 010551 437 QGQLVAERSRCFKLEAQIAELQK 459 (507)
Q Consensus 437 ~~~~~~~~~~~~~~e~~~~e~~~ 459 (507)
+.++++.+.+++..+.+..++++
T Consensus 164 ~~el~~~~~~Le~~~~~~~al~K 186 (216)
T KOG1962|consen 164 ETELEKKQKKLEKAQKKVDALKK 186 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 331
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.97 E-value=34 Score=31.35 Aligned_cols=41 Identities=10% Similarity=0.137 Sum_probs=21.2
Q ss_pred hhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhh
Q 010551 410 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL 450 (507)
Q Consensus 410 ~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~ 450 (507)
.-+.+++++++.+..+.....++|+++.+....+...+...
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa 72 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQA 72 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555666555555554444333
No 332
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=83.93 E-value=20 Score=32.86 Aligned_cols=9 Identities=22% Similarity=0.446 Sum_probs=3.2
Q ss_pred hhhHHHHHH
Q 010551 413 SRFREKIDE 421 (507)
Q Consensus 413 ~~l~~~l~~ 421 (507)
+.|..+|+.
T Consensus 136 a~L~~Kier 144 (338)
T KOG3647|consen 136 AALGSKIER 144 (338)
T ss_pred HHHHHHHHH
Confidence 333333333
No 333
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=83.90 E-value=36 Score=31.43 Aligned_cols=273 Identities=15% Similarity=0.167 Sum_probs=110.3
Q ss_pred EEEECCEEEE--EcCC-CCCccCCceEEEEcc-CCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEec
Q 010551 33 AAVFDQKLYI--VGGS-RNGRFLSDVQVFDLR-SLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG 108 (507)
Q Consensus 33 ~~~~~~~iyi--~GG~-~~~~~~~~~~~~d~~-~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG 108 (507)
+.+.++.||. ++|. ++-..+.-.|+=.-+ -++|..-.-..+. +| ..+...-.+.+|.+++++||++=-
T Consensus 21 aFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~--H~------~yptvnyHCmSMGv~~NRLfa~iE 92 (367)
T PF12217_consen 21 AFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDL--HP------DYPTVNYHCMSMGVVGNRLFAVIE 92 (367)
T ss_dssp -EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS-----T------TTTTEEEE-B-EEEETTEEEEEEE
T ss_pred ceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhc--CC------CCCccceeeeeeeeecceeeEEEe
Confidence 3456777773 4543 332223333444443 3467653222111 00 122233456678899999998743
Q ss_pred cC-CCCCCcceEEEEE---CCCCcEEEeecCCCCCC-------CCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551 109 HY-KKSSDSMIVRFID---LETNLCGVMETSGKVPV-------TRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET 177 (507)
Q Consensus 109 ~~-~~~~~~~~~~~yd---~~t~~W~~~~~~g~~p~-------~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t 177 (507)
.. -..........|+ +..+.|+.-... ..|. .-.-|+.+.+++.-|.+|=.+++-. ...+=.+-. +
T Consensus 93 tR~~a~~km~~~~Lw~RpMF~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~s-PRe~G~~yf-s 169 (367)
T PF12217_consen 93 TRTVASNKMVRAELWSRPMFHDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVS-PRELGFLYF-S 169 (367)
T ss_dssp EEETTT--EEEEEEEEEE-STTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SSS-S-EEEEEEE-T
T ss_pred ehhhhhhhhhhhhhhcccccccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCCC-cceeeEEEe-c
Confidence 32 1122233444454 456778764321 2222 3345788888887777775544322 122222111 1
Q ss_pred CcEEEeccC--CCCCCCCCCce---EEEEcCCEEEEEcCCC-CCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEE
Q 010551 178 MTWDAVEVT--QTPPAPRYDHS---AALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 251 (507)
Q Consensus 178 ~~W~~~~~~--~~~p~~r~~~~---~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~ 251 (507)
..|...... ...|..-...+ ++.+-++.||+.--.. ....-+.+++-+.....|..+... -...-...-.+.
T Consensus 170 ~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp--~nvHhtnlPFak 247 (367)
T PF12217_consen 170 DAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFP--NNVHHTNLPFAK 247 (367)
T ss_dssp TTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-T--T---SS---EEE
T ss_pred ccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcccc--ccccccCCCcee
Confidence 111111000 00121211111 2334466687764332 324445688888888889987431 112233334677
Q ss_pred ECCeEEEEeccCC---------CCC----cceEEEE-------ECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEE
Q 010551 252 IDENWYIVGGGDN---------NNG----CQETIVL-------NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHL 311 (507)
Q Consensus 252 ~~~~l~v~GG~~~---------~~~----~~~~~~~-------d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (507)
+++.|||||--.. +.. ....+.. ++..-.|..|...--.-.....+....++++.++=.-
T Consensus 248 vgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~ly 327 (367)
T PF12217_consen 248 VGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLY 327 (367)
T ss_dssp ETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEE
T ss_pred eCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEE
Confidence 8999999995321 111 1123322 3344456555432111111223445566677666556
Q ss_pred EEEccCC
Q 010551 312 VAFGGYN 318 (507)
Q Consensus 312 ~v~GG~~ 318 (507)
++|||.+
T Consensus 328 y~FGgED 334 (367)
T PF12217_consen 328 YIFGGED 334 (367)
T ss_dssp EEEEEB-
T ss_pred EEecCcc
Confidence 7899964
No 334
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=83.77 E-value=18 Score=30.42 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhh
Q 010551 466 TIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~~~~~~~~ 489 (507)
+++++++++-++.+++++++++.+
T Consensus 112 ~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 112 KLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 335
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=83.68 E-value=7.6 Score=37.37 Aligned_cols=17 Identities=12% Similarity=0.280 Sum_probs=6.8
Q ss_pred hHHHhhhhhhhhHHHHH
Q 010551 439 QLVAERSRCFKLEAQIA 455 (507)
Q Consensus 439 ~~~~~~~~~~~~e~~~~ 455 (507)
.+..+++++.++...++
T Consensus 40 sI~~QkkrLk~L~~sLk 56 (330)
T PF07851_consen 40 SISHQKKRLKELKKSLK 56 (330)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444443333
No 336
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.65 E-value=10 Score=40.25 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHH
Q 010551 388 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ 437 (507)
Q Consensus 388 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~ 437 (507)
..+++.|+.++..+...+.....+...|.....+.+..+.++++.++..+
T Consensus 86 q~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~ 135 (617)
T PF15070_consen 86 QAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQ 135 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555566566554444434444444444444444444444444433
No 337
>PRK10698 phage shock protein PspA; Provisional
Probab=83.65 E-value=23 Score=32.29 Aligned_cols=42 Identities=10% Similarity=0.251 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHh
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 432 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~e 432 (507)
+..+.....++...+.........+++++...+...+++++.
T Consensus 33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444455556666666666666666544
No 338
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=83.50 E-value=19 Score=36.31 Aligned_cols=28 Identities=36% Similarity=0.408 Sum_probs=10.8
Q ss_pred hHHHHHhhHHHhhhhhhhhHHHHHHHHH
Q 010551 432 ELSSVQGQLVAERSRCFKLEAQIAELQK 459 (507)
Q Consensus 432 el~~~~~~~~~~~~~~~~~e~~~~e~~~ 459 (507)
+|+.+..++..++|...+|..++..+++
T Consensus 220 el~~kt~el~~q~Ee~skLlsql~d~qk 247 (596)
T KOG4360|consen 220 ELQSKTKELSRQQEENSKLLSQLVDLQK 247 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3333333333333333333333333333
No 339
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=83.44 E-value=20 Score=36.55 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHH
Q 010551 392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSV 436 (507)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~ 436 (507)
..|++++..+...+.+..+...++.+..++.++.+++.+++-+++
T Consensus 28 ~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~I 72 (445)
T PRK13428 28 RLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARV 72 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444444444444444444444443333
No 340
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=83.44 E-value=12 Score=36.74 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhh
Q 010551 393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCF 448 (507)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~ 448 (507)
++..+..+.+........+...++.+-+.....+++.|-+|+.++.++.++.+++-
T Consensus 17 ~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 17 DLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445555556666666666666666677777766666655443
No 341
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=83.42 E-value=24 Score=33.83 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 010551 466 TIENEVQIL 474 (507)
Q Consensus 466 ~le~e~~~~ 474 (507)
+|+.+++.+
T Consensus 144 qLe~d~qs~ 152 (319)
T PF09789_consen 144 QLERDLQSL 152 (319)
T ss_pred HHHHHHHHH
Confidence 333333333
No 342
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=83.36 E-value=63 Score=33.92 Aligned_cols=125 Identities=14% Similarity=0.241 Sum_probs=70.7
Q ss_pred CCCCCCcCcEEEE--E-CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCC-CCCCCCceEEEEcCCEEEEEcCC
Q 010551 137 KVPVTRGGHSVTL--V-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAALHANRYLIVFGGC 212 (507)
Q Consensus 137 ~~p~~r~~~~~~~--~-~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~-p~~r~~~~~~~~~~~~l~v~GG~ 212 (507)
++|..+...+... + ++++++.. ...-+++.++..+.+..++....+- ..+-..+-++.-++++|.++++.
T Consensus 423 ~~~~~~~~a~~i~ftid~~k~~~~s------~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~ 496 (691)
T KOG2048|consen 423 DVPLALLDASAISFTIDKNKLFLVS------KNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR 496 (691)
T ss_pred cchhhhccceeeEEEecCceEEEEe------cccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc
Confidence 6777765544433 2 56777766 1244688888888777666432111 11222223333457888888764
Q ss_pred CCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEE----ECCeEEEEeccCCCCCcceEEEEECCCC---cEEEe
Q 010551 213 SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT----IDENWYIVGGGDNNNGCQETIVLNMTKL---AWSIL 284 (507)
Q Consensus 213 ~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~----~~~~l~v~GG~~~~~~~~~~~~~d~~~~---~W~~v 284 (507)
..+++||+++.+-..+.. ..+ ...+++. ..++++|. ..-+.++.||+... .|.+.
T Consensus 497 ------g~I~v~nl~~~~~~~l~~--rln---~~vTa~~~~~~~~~~lvva------ts~nQv~efdi~~~~l~~ws~~ 558 (691)
T KOG2048|consen 497 ------GQIFVYNLETLESHLLKV--RLN---IDVTAAAFSPFVRNRLVVA------TSNNQVFEFDIEARNLTRWSKN 558 (691)
T ss_pred ------ceEEEEEcccceeecchh--ccC---cceeeeeccccccCcEEEE------ecCCeEEEEecchhhhhhhhhc
Confidence 379999999988666521 111 2222222 24566666 12346889998543 46554
No 343
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=83.12 E-value=21 Score=31.64 Aligned_cols=72 Identities=18% Similarity=0.306 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
|.-|+...++....+...-.++-.|+..+.+....+...+.++...+..+ +.+..+++....|++++..+.+
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~---~~K~~ELE~ce~ELqr~~~Ea~ 83 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSL---RTKQLELEVCENELQRKKNEAE 83 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHhhHhHHHhHHHHHHHhCHHH
Confidence 34444444444433333334455555555555555544444444333322 2233334444444444444443
No 344
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=83.11 E-value=30 Score=31.82 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=17.7
Q ss_pred hhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhH
Q 010551 412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE 451 (507)
Q Consensus 412 ~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e 451 (507)
.++++.+|..+.....++...++..+.+++..++|++.|+
T Consensus 121 ~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 121 LQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444443
No 345
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=83.10 E-value=2.8 Score=42.26 Aligned_cols=55 Identities=24% Similarity=0.355 Sum_probs=30.2
Q ss_pred hhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccccCCCc
Q 010551 444 RSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGG 498 (507)
Q Consensus 444 ~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~q~~~g 498 (507)
++++.+++.+++++++++.+..+.++++.++.+|+++++++++++++...+...+
T Consensus 248 ~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~ 302 (406)
T PF02388_consen 248 QEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAEYGDE 302 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SE
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3333444444444444444444666677777777777777777666554443333
No 346
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=83.08 E-value=9.1 Score=32.72 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=5.4
Q ss_pred chhHHHhHHHHHhhH
Q 010551 426 HSELSKELSSVQGQL 440 (507)
Q Consensus 426 ~~e~~~el~~~~~~~ 440 (507)
++..+++++....++
T Consensus 52 l~~~~~el~~~~~~l 66 (158)
T PF03938_consen 52 LQAKQKELQKLQQKL 66 (158)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 347
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=83.03 E-value=19 Score=30.74 Aligned_cols=20 Identities=10% Similarity=0.321 Sum_probs=7.9
Q ss_pred hHHHHHHhhccchhHHHhHH
Q 010551 415 FREKIDEVNSTHSELSKELS 434 (507)
Q Consensus 415 l~~~l~~~~~~~~e~~~el~ 434 (507)
++.+++..+.+++...++++
T Consensus 48 ~~~~l~~~~~el~~~~~~l~ 67 (158)
T PF03938_consen 48 LQKELQAKQKELQKLQQKLQ 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333333
No 348
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=82.96 E-value=18 Score=39.63 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=7.6
Q ss_pred HHHHHHHhHHHHHHHH
Q 010551 470 EVQILRQQKSAFEQEM 485 (507)
Q Consensus 470 e~~~~~~~~~~~~~~~ 485 (507)
.+..++.+++.++.+.
T Consensus 586 aL~alrrhke~LE~e~ 601 (1195)
T KOG4643|consen 586 ALNALRRHKEKLEEEI 601 (1195)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444555555553
No 349
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=82.93 E-value=3.9 Score=32.38 Aligned_cols=10 Identities=20% Similarity=-0.104 Sum_probs=3.7
Q ss_pred hhHHHhhhhh
Q 010551 438 GQLVAERSRC 447 (507)
Q Consensus 438 ~~~~~~~~~~ 447 (507)
-|++.+++++
T Consensus 43 ~EN~~Lr~~l 52 (107)
T PF06156_consen 43 IENEHLRERL 52 (107)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 350
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=82.89 E-value=0.38 Score=52.35 Aligned_cols=59 Identities=27% Similarity=0.433 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHhhccchhHH---HhHHHHHhhHHHhhh---hhhhhHHHHHHHHHHHHhHHHHHH
Q 010551 411 ENSRFREKIDEVNSTHSELS---KELSSVQGQLVAERS---RCFKLEAQIAELQKMLESSQTIEN 469 (507)
Q Consensus 411 ~~~~l~~~l~~~~~~~~e~~---~el~~~~~~~~~~~~---~~~~~e~~~~e~~~~~~~~~~le~ 469 (507)
+...++..+.+++.+++++. ++.+..+.+++.+++ +..+++..++-.+++|+....+.+
T Consensus 268 ~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~ 332 (713)
T PF05622_consen 268 ELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKR 332 (713)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443332 334444555555543 334455555555555555553333
No 351
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.85 E-value=60 Score=33.26 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=36.6
Q ss_pred hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH---------------HHHHHHHHHH
Q 010551 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ---------------TIENEVQILR 475 (507)
Q Consensus 411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~---------------~le~e~~~~~ 475 (507)
....|+.++++...++++.+++...+++.-..+.+|.++.......+.++++.+- ++.+|++.+.
T Consensus 589 H~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~ 668 (741)
T KOG4460|consen 589 HVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIP 668 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhH
Confidence 3344444444444455555555555555555555555555444444555544442 4455665555
Q ss_pred HhHHHHHHH
Q 010551 476 QQKSAFEQE 484 (507)
Q Consensus 476 ~~~~~~~~~ 484 (507)
.+.+.+...
T Consensus 669 ~~~~~L~~~ 677 (741)
T KOG4460|consen 669 DQLRHLGNA 677 (741)
T ss_pred HHHHHHHHH
Confidence 555544333
No 352
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=82.83 E-value=5.4 Score=42.21 Aligned_cols=8 Identities=13% Similarity=0.476 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 010551 455 AELQKMLE 462 (507)
Q Consensus 455 ~e~~~~~~ 462 (507)
+++++++.
T Consensus 332 ~~l~~eL~ 339 (563)
T TIGR00634 332 EKIKEELD 339 (563)
T ss_pred HHHHHHHH
Confidence 33333333
No 353
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=82.60 E-value=26 Score=32.48 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=12.7
Q ss_pred HHHHHHhhhhHHHHhhhhhhHHHHHHhhcc
Q 010551 396 EDKRVLELSLTEVRTENSRFREKIDEVNST 425 (507)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (507)
.+.++-+..+++-..++.+|+-+|..+++.
T Consensus 75 akLkes~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 75 AKLKESENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444433
No 354
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.50 E-value=7.9 Score=36.84 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=20.2
Q ss_pred hhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHH
Q 010551 412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAE 456 (507)
Q Consensus 412 ~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e 456 (507)
.+.+++.-+++....++++.+++.++++.+.+++.+.=|...++|
T Consensus 234 q~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 234 QESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444
No 355
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=82.48 E-value=18 Score=26.87 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=30.9
Q ss_pred HHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHH----HHHHHHHHhHHHHHHHHH
Q 010551 418 KIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE----NEVQILRQQKSAFEQEME 486 (507)
Q Consensus 418 ~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le----~e~~~~~~~~~~~~~~~~ 486 (507)
.|+.+..+.+...+++...+.+....+-+ +.++++|++.--+.+-+|| +-.+++..++.++..+|+
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~k---i~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKHQKDEYEHK---INSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555444444444444333332222 3444444333322332333 345666667777777775
No 356
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=82.48 E-value=13 Score=38.19 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=16.2
Q ss_pred hhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010551 444 RSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 479 (507)
Q Consensus 444 ~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~ 479 (507)
+.++..++.+++.++.++...-+++.+..+++++.+
T Consensus 348 ~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~ 383 (458)
T COG3206 348 EQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAE 383 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHH
Confidence 444444444444444444444344444444444443
No 357
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=82.44 E-value=33 Score=29.99 Aligned_cols=15 Identities=33% Similarity=0.421 Sum_probs=5.7
Q ss_pred hhhHHHHHHhhccch
Q 010551 413 SRFREKIDEVNSTHS 427 (507)
Q Consensus 413 ~~l~~~l~~~~~~~~ 427 (507)
..+..+|++...++.
T Consensus 52 ~~l~~kIeERn~eL~ 66 (177)
T PF13870_consen 52 QQLNEKIEERNKELL 66 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333433333333
No 358
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=82.43 E-value=31 Score=29.70 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHh
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~ 438 (507)
...+.+++..+...+........+..+...+.+..+.+.+++-+.+..
T Consensus 34 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~ 81 (164)
T PRK14471 34 LGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILK 81 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666555555656566666666665555444433
No 359
>PRK09343 prefoldin subunit beta; Provisional
Probab=82.42 E-value=25 Score=28.58 Aligned_cols=85 Identities=13% Similarity=0.212 Sum_probs=0.0
Q ss_pred HhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh----------------------hhhhhhhHHHHHHHH
Q 010551 401 LELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE----------------------RSRCFKLEAQIAELQ 458 (507)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~----------------------~~~~~~~e~~~~e~~ 458 (507)
+...++....+.+.++++++....+.+.++.++++.+.-+..+ .+...+++..+.-++
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie 84 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLE 84 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 010551 459 KMLESSQTIENEVQILRQQKSAFEQEMERA 488 (507)
Q Consensus 459 ~~~~~~~~le~e~~~~~~~~~~~~~~~~~~ 488 (507)
.++..++++.+.+++++..+++++.++
T Consensus 85 ---~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 85 ---LRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 360
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.38 E-value=16 Score=35.96 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=5.5
Q ss_pred HHHHHHhhccchhH
Q 010551 416 REKIDEVNSTHSEL 429 (507)
Q Consensus 416 ~~~l~~~~~~~~e~ 429 (507)
+..++.++.++.++
T Consensus 303 qmr~qqleeentel 316 (502)
T KOG0982|consen 303 QMRDQQLEEENTEL 316 (502)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444333
No 361
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.30 E-value=4.6 Score=39.06 Aligned_cols=17 Identities=12% Similarity=0.442 Sum_probs=8.0
Q ss_pred HHHHHhHHHHHHHHHHh
Q 010551 472 QILRQQKSAFEQEMERA 488 (507)
Q Consensus 472 ~~~~~~~~~~~~~~~~~ 488 (507)
.++.+++.++++++++.
T Consensus 329 n~i~~~l~ql~rql~~i 345 (497)
T KOG3838|consen 329 NAIHKQLAQLERQLDKI 345 (497)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33444445555555433
No 362
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=82.28 E-value=18 Score=38.34 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=29.9
Q ss_pred HHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhh
Q 010551 397 DKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL 450 (507)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~ 450 (507)
++++++....+.+.++.++++.|+..+.++...+..+++...+....+.+..-|
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL 133 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLL 133 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555665555565666666666666666666555555555544444444443333
No 363
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=82.15 E-value=13 Score=36.50 Aligned_cols=6 Identities=17% Similarity=0.063 Sum_probs=2.3
Q ss_pred CCCCce
Q 010551 192 PRYDHS 197 (507)
Q Consensus 192 ~r~~~~ 197 (507)
.|.+|+
T Consensus 27 ~r~yFa 32 (359)
T PF10498_consen 27 SRHYFA 32 (359)
T ss_pred CHHHhc
Confidence 333333
No 364
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.05 E-value=6.3 Score=35.59 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhhhhH
Q 010551 391 IDAIKEDKRVLELSLT 406 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~ 406 (507)
+++|+++...++..|.
T Consensus 227 i~~lkeeia~Lkk~L~ 242 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLH 242 (305)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5566666555544443
No 365
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=81.99 E-value=5.8 Score=42.02 Aligned_cols=21 Identities=29% Similarity=0.181 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhcccccCCCce
Q 010551 479 SAFEQEMERATSVQTQGSGGV 499 (507)
Q Consensus 479 ~~~~~~~~~~~~~~~q~~~g~ 499 (507)
|..++.+-++...|...++|+
T Consensus 287 QK~~~a~aea~l~~ll~sg~~ 307 (1064)
T KOG1144|consen 287 QKEEAALAEAFLKQLLASGGG 307 (1064)
T ss_pred hHHHHHHHHHHHHHHHhcCCC
Confidence 344444555555555555554
No 366
>PLN00181 protein SPA1-RELATED; Provisional
Probab=81.98 E-value=90 Score=34.71 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=34.0
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE---CCEEEEEcCCCCCCCccCcEEEEECC
Q 010551 100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE 176 (507)
Q Consensus 100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~n~~~~~d~~ 176 (507)
++.+++.||.+. .+.+||+.++.-..... . .....++.+ ++.+++.|+.+ +.+.+||+.
T Consensus 587 ~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~~--~----~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~ 648 (793)
T PLN00181 587 DPTLLASGSDDG------SVKLWSINQGVSIGTIK--T----KANICCVQFPSESGRSLAFGSAD------HKVYYYDLR 648 (793)
T ss_pred CCCEEEEEcCCC------EEEEEECCCCcEEEEEe--c----CCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECC
Confidence 456777776532 38888887664322110 0 111222222 35677777755 358999987
Q ss_pred CC
Q 010551 177 TM 178 (507)
Q Consensus 177 t~ 178 (507)
+.
T Consensus 649 ~~ 650 (793)
T PLN00181 649 NP 650 (793)
T ss_pred CC
Confidence 54
No 367
>PRK10115 protease 2; Provisional
Probab=81.92 E-value=83 Score=34.27 Aligned_cols=251 Identities=8% Similarity=-0.053 Sum_probs=117.4
Q ss_pred CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCC
Q 010551 37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSD 115 (507)
Q Consensus 37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~ 115 (507)
++++++++-...+....++++.|+.++.. ++.. .... ..+++-. ++.-+++.........
T Consensus 137 dg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~~~----------------i~~~-~~~~~w~~D~~~~~y~~~~~~~~~ 197 (686)
T PRK10115 137 DNTIMALAEDFLSRRQYGIRFRNLETGNW--YPEL----------------LDNV-EPSFVWANDSWTFYYVRKHPVTLL 197 (686)
T ss_pred CCCEEEEEecCCCcEEEEEEEEECCCCCC--CCcc----------------ccCc-ceEEEEeeCCCEEEEEEecCCCCC
Confidence 55566666544455556778888876631 1111 1111 1333333 4443444433322123
Q ss_pred cceEEEEECCCCcE--EEeecCCCCCCCCcCcEEEEE-CC-EEEEEcCCCCCCCccCcEEEEEC--CCCcEEEeccCCCC
Q 010551 116 SMIVRFIDLETNLC--GVMETSGKVPVTRGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDL--ETMTWDAVEVTQTP 189 (507)
Q Consensus 116 ~~~~~~yd~~t~~W--~~~~~~g~~p~~r~~~~~~~~-~~-~iy~~GG~~~~~~~~n~~~~~d~--~t~~W~~~~~~~~~ 189 (507)
...+|.+++.|+.- ..+-.. +......+.... ++ .++ +..... ..+.++.|+. .+..|..+.. .
T Consensus 198 ~~~v~~h~lgt~~~~d~lv~~e---~~~~~~~~~~~s~d~~~l~-i~~~~~---~~~~~~l~~~~~~~~~~~~~~~---~ 267 (686)
T PRK10115 198 PYQVWRHTIGTPASQDELVYEE---KDDTFYVSLHKTTSKHYVV-IHLASA---TTSEVLLLDAELADAEPFVFLP---R 267 (686)
T ss_pred CCEEEEEECCCChhHCeEEEee---CCCCEEEEEEEcCCCCEEE-EEEECC---ccccEEEEECcCCCCCceEEEE---C
Confidence 46799999998832 222211 111222222222 33 343 443332 2456888884 3344433321 1
Q ss_pred CCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECC-CCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCc
Q 010551 190 PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGC 268 (507)
Q Consensus 190 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~ 268 (507)
+ ....+ .....++.+|+.--.+ .....+...++. ...|+.+-. ..+ .+.--.+...++.+++..- ....
T Consensus 268 ~-~~~~~-~~~~~~~~ly~~tn~~--~~~~~l~~~~~~~~~~~~~l~~--~~~-~~~i~~~~~~~~~l~~~~~---~~g~ 337 (686)
T PRK10115 268 R-KDHEY-SLDHYQHRFYLRSNRH--GKNFGLYRTRVRDEQQWEELIP--PRE-NIMLEGFTLFTDWLVVEER---QRGL 337 (686)
T ss_pred C-CCCEE-EEEeCCCEEEEEEcCC--CCCceEEEecCCCcccCeEEEC--CCC-CCEEEEEEEECCEEEEEEE---eCCE
Confidence 1 11112 2224456677765432 222347777776 578887632 111 1122233444677776642 2234
Q ss_pred ceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEE----cCceEEEEEccCCCCcCceEEEEECCCCCCC
Q 010551 269 QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAII----EGEHHLVAFGGYNGKYNNEVFVMRLKPRDIP 336 (507)
Q Consensus 269 ~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~l~v~GG~~~~~~~~~~~~~~~~~~w~ 336 (507)
..+++++..+.....+.. +.+ ... ..... .++..++.+.++ ....++|.+|+....+.
T Consensus 338 ~~l~~~~~~~~~~~~l~~-~~~------~~~-~~~~~~~~~~~~~~~~~~ss~--~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 338 TSLRQINRKTREVIGIAF-DDP------AYV-TWIAYNPEPETSRLRYGYSSM--TTPDTLFELDMDTGERR 399 (686)
T ss_pred EEEEEEcCCCCceEEecC-CCC------ceE-eeecccCCCCCceEEEEEecC--CCCCEEEEEECCCCcEE
Confidence 568888876655555431 111 111 11111 112344444443 35688999998776554
No 368
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=81.76 E-value=15 Score=40.33 Aligned_cols=52 Identities=21% Similarity=0.198 Sum_probs=23.0
Q ss_pred hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHH
Q 010551 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
+.+.+..++.+++.+..+.++++.+.+.+++.++....+++.++...++++.
T Consensus 644 ~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~ 695 (1072)
T KOG0979|consen 644 EIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKE 695 (1072)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3333444444444444444455555555554444444444443333333333
No 369
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=81.74 E-value=18 Score=37.24 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=6.9
Q ss_pred HHHHHHHhHHHHHHHHH
Q 010551 470 EVQILRQQKSAFEQEME 486 (507)
Q Consensus 470 e~~~~~~~~~~~~~~~~ 486 (507)
++.+++.++...+.+++
T Consensus 292 ~l~~~~~~l~~~~~~l~ 308 (457)
T TIGR01000 292 EITDLNQKLLELESKIK 308 (457)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444443
No 370
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=81.69 E-value=79 Score=33.84 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=56.8
Q ss_pred CCCceEEeecCCCC-CCc-------cccc-----eEEEECCEEEEEcCCCCCccCCceEEEEccCCceee-eccccccCC
Q 010551 11 PYDLWVTLPVSGAR-PSP-------RYKH-----AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSN-LRLETELDA 76 (507)
Q Consensus 11 ~~~~W~~~~~~~~~-p~~-------r~~~-----~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~~~~~~ 76 (507)
.+..|..++.+++. |.| +.|| +.++..+++.++.|.+ +++-+.|..+..-.. +++
T Consensus 344 Ntv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-----~SikiWn~~t~kciRTi~~------ 412 (888)
T KOG0306|consen 344 NTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-----ESIKIWNRDTLKCIRTITC------ 412 (888)
T ss_pred CceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-----CcEEEEEccCcceeEEecc------
Confidence 34578888875433 322 2233 2333455555555422 346677776544322 221
Q ss_pred CccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEE
Q 010551 77 DKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLI 155 (507)
Q Consensus 77 ~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy 155 (507)
. +-+++..+ |++..+.|+.++. +.+||..+..--... ....+.....+..-+++-+
T Consensus 413 -------------~-y~l~~~Fvpgd~~Iv~G~k~Ge------l~vfdlaS~~l~Eti---~AHdgaIWsi~~~pD~~g~ 469 (888)
T KOG0306|consen 413 -------------G-YILASKFVPGDRYIVLGTKNGE------LQVFDLASASLVETI---RAHDGAIWSISLSPDNKGF 469 (888)
T ss_pred -------------c-cEEEEEecCCCceEEEeccCCc------eEEEEeehhhhhhhh---hccccceeeeeecCCCCce
Confidence 1 33344444 5666666665443 778887765321111 1111111111222356778
Q ss_pred EEcCCCC
Q 010551 156 IFGGEDR 162 (507)
Q Consensus 156 ~~GG~~~ 162 (507)
+.||.+.
T Consensus 470 vT~saDk 476 (888)
T KOG0306|consen 470 VTGSADK 476 (888)
T ss_pred EEecCCc
Confidence 8888764
No 371
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=81.41 E-value=43 Score=30.64 Aligned_cols=135 Identities=21% Similarity=0.190 Sum_probs=69.8
Q ss_pred ceeeeccccccCCCccccCCCcCCCCCccceeEE-EECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCC
Q 010551 64 AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMV-KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTR 142 (507)
Q Consensus 64 ~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 142 (507)
.|+..+++.. ...+.|-.+...+ .-.|.|+..||.+ .+|..|+.+++.+..- .-..-
T Consensus 100 lwe~~~P~~~-----------~~~evPeINam~ldP~enSi~~AgGD~-------~~y~~dlE~G~i~r~~----rGHtD 157 (325)
T KOG0649|consen 100 LWEVKIPMQV-----------DAVEVPEINAMWLDPSENSILFAGGDG-------VIYQVDLEDGRIQREY----RGHTD 157 (325)
T ss_pred hhhhcCcccc-----------CcccCCccceeEeccCCCcEEEecCCe-------EEEEEEecCCEEEEEE----cCCcc
Confidence 4766666543 1334444443333 3478899998843 4999999999977653 11223
Q ss_pred cCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEe-ccCCC--CCCCCCCc--eEEEEcCCEEEEEcCCCCCC
Q 010551 143 GGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAV-EVTQT--PPAPRYDH--SAALHANRYLIVFGGCSHSI 216 (507)
Q Consensus 143 ~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~-~~~~~--~p~~r~~~--~~~~~~~~~l~v~GG~~~~~ 216 (507)
+-|+.+.-+. -=++-|+-|+ .+-++|+.|.+-..+ .+... +..|-.+- .+...+.+ -+|.||..
T Consensus 158 YvH~vv~R~~~~qilsG~EDG------tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGgGp--- 227 (325)
T KOG0649|consen 158 YVHSVVGRNANGQILSGAEDG------TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGGGP--- 227 (325)
T ss_pred eeeeeeecccCcceeecCCCc------cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEecCCC---
Confidence 3444444332 2234555543 477788888764433 22211 11111222 33334444 66666642
Q ss_pred CCCcEEEEECCCCcEEe
Q 010551 217 FFNDLHVLDLQTNEWSQ 233 (507)
Q Consensus 217 ~~~~i~~~d~~~~~W~~ 233 (507)
.+-.+++.+.+-+.
T Consensus 228 ---~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 228 ---KLSLWHLRSSESTC 241 (325)
T ss_pred ---ceeEEeccCCCceE
Confidence 34555555554443
No 372
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=81.40 E-value=14 Score=38.13 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=13.0
Q ss_pred hhhhhHHHHHHhhccchhHHHhHHHHHhhHH
Q 010551 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLV 441 (507)
Q Consensus 411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~ 441 (507)
++.+|+.++.++...+++.++.....+.++.
T Consensus 114 ei~kl~~e~~elr~~~~~~~k~~~~~re~~~ 144 (546)
T KOG0977|consen 114 EITKLREELKELRKKLEKAEKERRGAREKLD 144 (546)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444444444444444444444333333333
No 373
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=81.37 E-value=40 Score=31.31 Aligned_cols=24 Identities=13% Similarity=0.418 Sum_probs=12.0
Q ss_pred hhhhhHHHHHHhhccchhHHHhHH
Q 010551 411 ENSRFREKIDEVNSTHSELSKELS 434 (507)
Q Consensus 411 ~~~~l~~~l~~~~~~~~e~~~el~ 434 (507)
....|+++++.++..+....+++.
T Consensus 82 ~l~~Lq~ql~~l~akI~k~~~el~ 105 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQKTQEELN 105 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544444433
No 374
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=81.12 E-value=26 Score=37.38 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=12.5
Q ss_pred cchhhHHHHHHHHHHHhhhhH
Q 010551 386 DVRTDIDAIKEDKRVLELSLT 406 (507)
Q Consensus 386 ~~~~~~~~l~~~~~~~~~~~~ 406 (507)
.++.+..+|.++.|++.+.+.
T Consensus 391 plrsENaqLrRrLrilnqqlr 411 (861)
T PF15254_consen 391 PLRSENAQLRRRLRILNQQLR 411 (861)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 455556666666666655443
No 375
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=81.02 E-value=13 Score=38.31 Aligned_cols=11 Identities=27% Similarity=0.462 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 010551 391 IDAIKEDKRVL 401 (507)
Q Consensus 391 ~~~l~~~~~~~ 401 (507)
...|+..|+.+
T Consensus 113 LaRLe~dkesL 123 (861)
T KOG1899|consen 113 LARLEMDKESL 123 (861)
T ss_pred HHHHhcchhhh
Confidence 33334444433
No 376
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=81.00 E-value=36 Score=29.45 Aligned_cols=47 Identities=11% Similarity=0.198 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHh
Q 010551 392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~ 438 (507)
..|.+++..+...+.+......+..+.+.+.+..+.+.+.+-+.+..
T Consensus 37 ~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~ 83 (167)
T PRK14475 37 GALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLA 83 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666665555555555555555566666666555555444433
No 377
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=80.92 E-value=20 Score=32.61 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHH
Q 010551 394 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ 437 (507)
Q Consensus 394 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~ 437 (507)
|....++++..+.+.+.........-..+++++.+.+++....+
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~ 71 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWE 71 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444333
No 378
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=80.91 E-value=1.6 Score=35.25 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=37.1
Q ss_pred HHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010551 420 DEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 479 (507)
Q Consensus 420 ~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~ 479 (507)
...-.++..+.+.|-.-..++..+...+.+++....+++++|.-+...+++++..+..++
T Consensus 39 ~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE 98 (116)
T PF05064_consen 39 NEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLE 98 (116)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455556677777777777777777777777777777777777777777776666554
No 379
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=80.90 E-value=7.5 Score=36.55 Aligned_cols=29 Identities=28% Similarity=0.173 Sum_probs=11.2
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHhHHHHH
Q 010551 440 LVAERSRCFKLEAQIAELQKMLESSQTIE 468 (507)
Q Consensus 440 ~~~~~~~~~~~e~~~~e~~~~~~~~~~le 468 (507)
++.++.++.+|+-++++..-+++++++.+
T Consensus 63 l~~lq~ev~~LrG~~E~~~~~l~~~~~rq 91 (263)
T PRK10803 63 LSDNQSDIDSLRGQIQENQYQLNQVVERQ 91 (263)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333333333334444444443333333
No 380
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=80.89 E-value=35 Score=29.22 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHh
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~ 438 (507)
...|.+++..+...+........+..+.+.+.+..+.+.+++..++..
T Consensus 31 ~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~ 78 (159)
T PRK13461 31 KAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVE 78 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666665555555555566666666665555444443
No 381
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=80.81 E-value=33 Score=33.32 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=6.3
Q ss_pred HHHHHHHHhhcccc
Q 010551 480 AFEQEMERATSVQT 493 (507)
Q Consensus 480 ~~~~~~~~~~~~~~ 493 (507)
++..++.+++...-
T Consensus 478 RLaaEItrLRtllt 491 (593)
T KOG4807|consen 478 RLAAEITRLRTLLT 491 (593)
T ss_pred HHHHHHHHHHHHhc
Confidence 44444444444433
No 382
>PRK02119 hypothetical protein; Provisional
Probab=80.78 E-value=11 Score=27.47 Aligned_cols=52 Identities=15% Similarity=0.129 Sum_probs=0.0
Q ss_pred hhHHHhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhh
Q 010551 438 GQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 438 ~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~~~~~~ 489 (507)
++.....+|+.+||.+++-.+.-+.++. +.++++..+++++..+.+.+++.+
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 383
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=80.76 E-value=11 Score=41.44 Aligned_cols=7 Identities=14% Similarity=0.415 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 010551 478 KSAFEQE 484 (507)
Q Consensus 478 ~~~~~~~ 484 (507)
..+++++
T Consensus 378 ~~~L~Re 384 (754)
T TIGR01005 378 LDALQRD 384 (754)
T ss_pred HHHHHHH
Confidence 3344444
No 384
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=80.73 E-value=5 Score=31.84 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=11.7
Q ss_pred HHHhhccchhHHHhHHHHHhhHHHhhhhhh
Q 010551 419 IDEVNSTHSELSKELSSVQGQLVAERSRCF 448 (507)
Q Consensus 419 l~~~~~~~~e~~~el~~~~~~~~~~~~~~~ 448 (507)
+.+++..+.++.+|-...+-+++.+++++.
T Consensus 24 l~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 24 LGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444444
No 385
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=80.67 E-value=18 Score=29.93 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=11.2
Q ss_pred hHHHHHHhhccchhHHHhHHHHHhhHHHh
Q 010551 415 FREKIDEVNSTHSELSKELSSVQGQLVAE 443 (507)
Q Consensus 415 l~~~l~~~~~~~~e~~~el~~~~~~~~~~ 443 (507)
++..++.....+......+.....++..+
T Consensus 24 l~~~~~~a~~~~~~~~~~l~~~~~qL~~l 52 (135)
T TIGR03495 24 ARADLERANRVLKAQQAELASKANQLIVL 52 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33344444444333333333333333333
No 386
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=80.64 E-value=13 Score=38.14 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=20.3
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 010551 441 VAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 441 ~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~~~~~~~~ 486 (507)
+.+.+++..++.++...-+...+..+|+++.+..++-.+++....+
T Consensus 352 ~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~q 397 (458)
T COG3206 352 AALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQ 397 (458)
T ss_pred HHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444433333
No 387
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=80.59 E-value=17 Score=39.49 Aligned_cols=74 Identities=20% Similarity=0.372 Sum_probs=37.9
Q ss_pred HHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhh
Q 010551 416 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 416 ~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~~~~~~ 489 (507)
..+++..+.++++.+..+..++.++...++-....+.++.-.+...+.++ .++.++.+++.+...|+.+++..+
T Consensus 616 ~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er 693 (769)
T PF05911_consen 616 QDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKER 693 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555444444444444443333333333 345667777777777777766543
No 388
>PRK11519 tyrosine kinase; Provisional
Probab=80.59 E-value=17 Score=39.71 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=35.8
Q ss_pred hHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccccCCCceeeee
Q 010551 439 QLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWI 503 (507)
Q Consensus 439 ~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~q~~~g~~~~~ 503 (507)
+...+++++.+++.++.++-+.+++..+|+++.+..++--+.+.+.++|.+ ..+....+.|+=|
T Consensus 347 ~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~-i~~a~~~~~~rIi 410 (719)
T PRK11519 347 KRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK-ITEASTVGDVRIV 410 (719)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHhcCCCCCeEEE
Confidence 334445556666666666666666666666666666666655555555443 2223333455544
No 389
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=80.55 E-value=97 Score=34.14 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=24.9
Q ss_pred cceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeec
Q 010551 30 KHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLR 69 (507)
Q Consensus 30 ~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~ 69 (507)
..+-+++++.||+... .+.++.+|..|++ |+.-+
T Consensus 187 e~TPlvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 187 QATPLKVGDTLYLCTP------HNKVIALDAATGKEKWKFDP 222 (764)
T ss_pred ccCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcC
Confidence 3455677999999864 3578999998875 76644
No 390
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=80.40 E-value=58 Score=31.50 Aligned_cols=136 Identities=12% Similarity=0.090 Sum_probs=76.5
Q ss_pred CEEEEEcCC-C-C--CccC-CceEEEEccCC-----ceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEe
Q 010551 38 QKLYIVGGS-R-N--GRFL-SDVQVFDLRSL-----AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILG 107 (507)
Q Consensus 38 ~~iyi~GG~-~-~--~~~~-~~~~~~d~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~G 107 (507)
..++++|.. . + .... ..+++|+.... .++.+....- +-.-++++.++++|++..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~----------------~g~V~ai~~~~~~lv~~~ 105 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV----------------KGPVTAICSFNGRLVVAV 105 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE----------------SS-EEEEEEETTEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee----------------cCcceEhhhhCCEEEEee
Confidence 467777752 1 1 1122 67999999885 5555543321 123467777899977766
Q ss_pred ccCCCCCCcceEEEEECCCCc-EEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccC
Q 010551 108 GHYKKSSDSMIVRFIDLETNL-CGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT 186 (507)
Q Consensus 108 G~~~~~~~~~~~~~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~ 186 (507)
|. .+.+|++.... +.... ....+....++.++++.|++---..+ -.++.|+....+-..+..
T Consensus 106 g~--------~l~v~~l~~~~~l~~~~---~~~~~~~i~sl~~~~~~I~vgD~~~s-----v~~~~~~~~~~~l~~va~- 168 (321)
T PF03178_consen 106 GN--------KLYVYDLDNSKTLLKKA---FYDSPFYITSLSVFKNYILVGDAMKS-----VSLLRYDEENNKLILVAR- 168 (321)
T ss_dssp TT--------EEEEEEEETTSSEEEEE---EE-BSSSEEEEEEETTEEEEEESSSS-----EEEEEEETTTE-EEEEEE-
T ss_pred cC--------EEEEEEccCcccchhhh---eecceEEEEEEeccccEEEEEEcccC-----EEEEEEEccCCEEEEEEe-
Confidence 52 37788877777 87776 34444455667777887765322221 124456765555666653
Q ss_pred CCCCCCCCCceEEEE-cCCEEEEE
Q 010551 187 QTPPAPRYDHSAALH-ANRYLIVF 209 (507)
Q Consensus 187 ~~~p~~r~~~~~~~~-~~~~l~v~ 209 (507)
.+.++...++..+ +++ .++.
T Consensus 169 --d~~~~~v~~~~~l~d~~-~~i~ 189 (321)
T PF03178_consen 169 --DYQPRWVTAAEFLVDED-TIIV 189 (321)
T ss_dssp --ESS-BEEEEEEEE-SSS-EEEE
T ss_pred --cCCCccEEEEEEecCCc-EEEE
Confidence 2335555566666 454 4443
No 391
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=80.22 E-value=24 Score=32.21 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 010551 466 TIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~~~~~ 486 (507)
+++.+..++.+++.++.++..
T Consensus 193 eie~a~~~Le~ei~~l~~~~~ 213 (221)
T PF05700_consen 193 EIEVACEELEQEIEQLKRKAA 213 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 392
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=80.22 E-value=6.6 Score=37.80 Aligned_cols=39 Identities=23% Similarity=0.434 Sum_probs=16.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccccCCCceee
Q 010551 457 LQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWR 501 (507)
Q Consensus 457 ~~~~~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~q~~~g~~~ 501 (507)
++++++.+.++.++++++.++...|.+-|. -.+.+|.||
T Consensus 36 L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~------~~k~rG~wG 74 (304)
T PF02646_consen 36 LKEQLKQLSEANGEIQQLSQEASNLTSALK------NSKTRGNWG 74 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHh------CCCchhhHH
Confidence 333333334444444444444444433332 234556664
No 393
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=80.21 E-value=40 Score=29.51 Aligned_cols=69 Identities=13% Similarity=0.215 Sum_probs=42.7
Q ss_pred CCccCcEEEEECCCCcEEEeccCCC--CCCCCCCceEEEEcCCEE-EEEcCCCCC-CCCCcEEEEECCCCcEEecc
Q 010551 164 RKLLNDVHFLDLETMTWDAVEVTQT--PPAPRYDHSAALHANRYL-IVFGGCSHS-IFFNDLHVLDLQTNEWSQPE 235 (507)
Q Consensus 164 ~~~~n~~~~~d~~t~~W~~~~~~~~--~p~~r~~~~~~~~~~~~l-~v~GG~~~~-~~~~~i~~~d~~~~~W~~~~ 235 (507)
.....++|++|..++.|..+..... -..|. -+.-+++..| +++|...+. ..-..+|+|++.++.-..+.
T Consensus 84 eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 84 EEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELY 156 (200)
T ss_pred cccceeEEEEecCCCceEEEEecCcccccCCc---eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEee
Confidence 3346789999999999877754221 11233 2344566555 455532221 23357999999999988763
No 394
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=80.06 E-value=2.4 Score=36.28 Aligned_cols=18 Identities=6% Similarity=0.154 Sum_probs=1.6
Q ss_pred HhhHHHhhhhhhhhHHHH
Q 010551 437 QGQLVAERSRCFKLEAQI 454 (507)
Q Consensus 437 ~~~~~~~~~~~~~~e~~~ 454 (507)
+.+.|.+++++.+|++++
T Consensus 30 ~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 30 REEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 395
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=80.05 E-value=25 Score=38.34 Aligned_cols=6 Identities=50% Similarity=0.911 Sum_probs=2.4
Q ss_pred HHHHHH
Q 010551 391 IDAIKE 396 (507)
Q Consensus 391 ~~~l~~ 396 (507)
+..+++
T Consensus 324 i~~lke 329 (775)
T PF10174_consen 324 IEVLKE 329 (775)
T ss_pred HHHHHH
Confidence 444433
No 396
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.94 E-value=29 Score=35.40 Aligned_cols=29 Identities=14% Similarity=0.324 Sum_probs=17.0
Q ss_pred hhhhhhHHHHHHhhccchhHHHhHHHHHh
Q 010551 410 TENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 410 ~~~~~l~~~l~~~~~~~~e~~~el~~~~~ 438 (507)
+++..|++++++++.+..-.+.++.+.++
T Consensus 43 eeK~~Lkqq~eEleaeyd~~R~Eldqtke 71 (772)
T KOG0999|consen 43 EEKEDLKQQLEELEAEYDLARTELDQTKE 71 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666655555554443
No 397
>PRK10780 periplasmic chaperone; Provisional
Probab=79.90 E-value=7.7 Score=33.57 Aligned_cols=16 Identities=0% Similarity=0.021 Sum_probs=6.5
Q ss_pred hhHHHHHHhhccchhH
Q 010551 414 RFREKIDEVNSTHSEL 429 (507)
Q Consensus 414 ~l~~~l~~~~~~~~e~ 429 (507)
..+.+|+....+++..
T Consensus 54 ~~q~el~~~~~elq~~ 69 (165)
T PRK10780 54 GRASELQRMETDLQAK 69 (165)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 398
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=79.63 E-value=0.58 Score=47.47 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHhhhhHHHH----hhhhhhHHHHHHhhccchhHHHhHHHHHhhHHH
Q 010551 387 VRTDIDAIKEDKRVLELSLTEVR----TENSRFREKIDEVNSTHSELSKELSSVQGQLVA 442 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~ 442 (507)
|..||..||++.+.....+++-. .+.+++.+.+.+.+..+++-|+.|++.+.+.+.
T Consensus 374 YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~ 433 (495)
T PF12004_consen 374 YEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDS 433 (495)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHH
Confidence 44455555554443332222211 123334444555555555555544444443333
No 399
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=79.59 E-value=13 Score=32.03 Aligned_cols=40 Identities=30% Similarity=0.493 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010551 448 FKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 448 ~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~~~~~~~~~ 487 (507)
.+++.++.+++++++.+++++.+...++.+-..++.+|+.
T Consensus 123 ~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~ 162 (171)
T PF04799_consen 123 NELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELER 162 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666666654
No 400
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.53 E-value=12 Score=35.57 Aligned_cols=18 Identities=33% Similarity=0.161 Sum_probs=7.5
Q ss_pred hhhhhhhhHHHHHHHHHH
Q 010551 443 ERSRCFKLEAQIAELQKM 460 (507)
Q Consensus 443 ~~~~~~~~e~~~~e~~~~ 460 (507)
+++.++.||++++.+++.
T Consensus 251 L~~~~etLEqq~~~L~~n 268 (365)
T KOG2391|consen 251 LVAMKETLEQQLQSLQKN 268 (365)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333334444444444443
No 401
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=79.51 E-value=8.6 Score=27.42 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=8.2
Q ss_pred ccchhHHHhHHHHHhhHHHhh
Q 010551 424 STHSELSKELSSVQGQLVAER 444 (507)
Q Consensus 424 ~~~~e~~~el~~~~~~~~~~~ 444 (507)
.+.+++..++...+++++..+
T Consensus 10 ~EkeeL~~klk~~qeel~~~k 30 (69)
T PF08912_consen 10 KEKEELNNKLKKQQEELQKLK 30 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333444333433333443333
No 402
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=79.46 E-value=69 Score=31.77 Aligned_cols=216 Identities=13% Similarity=0.039 Sum_probs=96.2
Q ss_pred CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCc
Q 010551 37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 116 (507)
Q Consensus 37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 116 (507)
+++-++|+|... ....+|.+|+.++.-.++..-.. ....+-.++.-++.+|++-. .
T Consensus 46 dG~kllF~s~~d--g~~nly~lDL~t~~i~QLTdg~g---------------~~~~g~~~s~~~~~~~Yv~~-------~ 101 (386)
T PF14583_consen 46 DGRKLLFASDFD--GNRNLYLLDLATGEITQLTDGPG---------------DNTFGGFLSPDDRALYYVKN-------G 101 (386)
T ss_dssp TS-EEEEEE-TT--SS-EEEEEETTT-EEEE---SS----------------B-TTT-EE-TTSSEEEEEET-------T
T ss_pred CCCEEEEEeccC--CCcceEEEEcccCEEEECccCCC---------------CCccceEEecCCCeEEEEEC-------C
Confidence 444455555322 23578999999999888875321 12333333333566655531 1
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEEC--CEEEEEcCC----CC-------------CCCccCcEEEEECCC
Q 010551 117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVG--SRLIIFGGE----DR-------------SRKLLNDVHFLDLET 177 (507)
Q Consensus 117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~--~~iy~~GG~----~~-------------~~~~~n~~~~~d~~t 177 (507)
..+...|+.|.+=+.+- ..|..-.++...+++ ...+ +|=. +. .......+...|+.+
T Consensus 102 ~~l~~vdL~T~e~~~vy---~~p~~~~g~gt~v~n~d~t~~-~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t 177 (386)
T PF14583_consen 102 RSLRRVDLDTLEERVVY---EVPDDWKGYGTWVANSDCTKL-VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT 177 (386)
T ss_dssp TEEEEEETTT--EEEEE---E--TTEEEEEEEEE-TTSSEE-EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred CeEEEEECCcCcEEEEE---ECCcccccccceeeCCCccEE-EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence 35889999998765554 445554444333333 2221 1110 10 012345688889999
Q ss_pred CcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCC-CcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCe-
Q 010551 178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFF-NDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN- 255 (507)
Q Consensus 178 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~-~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~- 255 (507)
+....+-... .-.+|....-.+..+++|.--+.-... ..||..|........+. ...+...++|---.-++.
T Consensus 178 G~~~~v~~~~----~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~--~~~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 178 GERKVVFEDT----DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH--RRMEGESVGHEFWVPDGST 251 (386)
T ss_dssp --EEEEEEES----S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-
T ss_pred CceeEEEecC----ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee--cCCCCcccccccccCCCCE
Confidence 8887774321 122444444445567777543333333 37999998876666653 223344555554444553
Q ss_pred EEEEeccCCCCCcceEEEEECCCCcEEEeccC
Q 010551 256 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSV 287 (507)
Q Consensus 256 l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~ 287 (507)
|+..+... ...-.-+..||+.+..=+.+..+
T Consensus 252 i~y~~~~~-~~~~~~i~~~d~~t~~~~~~~~~ 282 (386)
T PF14583_consen 252 IWYDSYTP-GGQDFWIAGYDPDTGERRRLMEM 282 (386)
T ss_dssp EEEEEEET-TT--EEEEEE-TTT--EEEEEEE
T ss_pred EEEEeecC-CCCceEEEeeCCCCCCceEEEeC
Confidence 33333322 22222366788887754444433
No 403
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=79.25 E-value=22 Score=40.04 Aligned_cols=24 Identities=8% Similarity=-0.011 Sum_probs=10.4
Q ss_pred CCEEEEEeccCCCCCCcceEEEEE
Q 010551 100 GTKLLILGGHYKKSSDSMIVRFID 123 (507)
Q Consensus 100 ~~~lyv~GG~~~~~~~~~~~~~yd 123 (507)
+++||++=-+-+++...+-+-.|+
T Consensus 147 ~~~LYlVMdY~pGGDlltLlSk~~ 170 (1317)
T KOG0612|consen 147 ERYLYLVMDYMPGGDLLTLLSKFD 170 (1317)
T ss_pred ccceEEEEecccCchHHHHHhhcC
Confidence 455665544443333233333344
No 404
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=79.12 E-value=41 Score=28.97 Aligned_cols=95 Identities=14% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh--hhhhhhhHHHHHHHHHHHHhHH-HH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE--RSRCFKLEAQIAELQKMLESSQ-TI 467 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~--~~~~~~~e~~~~e~~~~~~~~~-~l 467 (507)
...|.+++..+...+........+....+.+.+..+.+.+.+-+.+..+-... +.+...++.-..+.++.+.+.. ++
T Consensus 34 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I 113 (164)
T PRK14473 34 LNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQA 113 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 010551 468 ENEVQILRQQKSAFEQEM 485 (507)
Q Consensus 468 e~e~~~~~~~~~~~~~~~ 485 (507)
+++.+....++...--.+
T Consensus 114 ~~ek~~a~~~L~~~i~~l 131 (164)
T PRK14473 114 EQERQRMLSELKSQIADL 131 (164)
T ss_pred HHHHHHHHHHHHHHHHHH
No 405
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=79.07 E-value=36 Score=28.29 Aligned_cols=105 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhH----HHhHHHHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL----SKELSSVQGQLVAERSRCFKLEAQIAELQKM 460 (507)
Q Consensus 385 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~----~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~ 460 (507)
+.+....+.++..+.++.+..+.......+-.+.|.....+++-. ++++..++..++.....+.-+-+.-+..+++
T Consensus 34 s~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkE 113 (159)
T PF04949_consen 34 SAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKE 113 (159)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHhHH----HHHHHHHHHHHhHHHHHHHHHHhh
Q 010551 461 LESSQ----TIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 461 ~~~~~----~le~e~~~~~~~~~~~~~~~~~~~ 489 (507)
..... +..++..++-..+-.+..+.+.++
T Consensus 114 ykealea~nEknkeK~~Lv~~L~eLv~eSE~~r 146 (159)
T PF04949_consen 114 YKEALEAFNEKNKEKAQLVTRLMELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 406
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=79.05 E-value=16 Score=38.41 Aligned_cols=85 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhh------------------hhhHHHHHHHHHHHHhHH----HH
Q 010551 410 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC------------------FKLEAQIAELQKMLESSQ----TI 467 (507)
Q Consensus 410 ~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~------------------~~~e~~~~e~~~~~~~~~----~l 467 (507)
....+|+++|++++.++.+.+.++...+.++.-++... .++.+...-..+++.++. ++
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREA 150 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccccc
Q 010551 468 ENEVQILRQQKSAFEQEMERATSVQTQ 494 (507)
Q Consensus 468 e~e~~~~~~~~~~~~~~~~~~~~~~~q 494 (507)
++++++++++++.+++++..+.....+
T Consensus 151 ~~~~~~~~~~l~~l~~~l~~l~~~~~~ 177 (525)
T TIGR02231 151 ERRIRELEKQLSELQNELNALLTGKSQ 177 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcc
No 407
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=79.03 E-value=37 Score=28.43 Aligned_cols=98 Identities=21% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh--hhhhhhhHHHHHHHHHHHHhHH-HH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE--RSRCFKLEAQIAELQKMLESSQ-TI 467 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~--~~~~~~~e~~~~e~~~~~~~~~-~l 467 (507)
...+.+++..+...+.....-..++.....+.+..+.+.+.+-+....+.... ++....+++-..+.++++.... ++
T Consensus 33 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l 112 (141)
T PRK08476 33 LKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQL 112 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHHHh
Q 010551 468 ENEVQILRQQKSAFEQEMERA 488 (507)
Q Consensus 468 e~e~~~~~~~~~~~~~~~~~~ 488 (507)
+++...+..++...-..+.++
T Consensus 113 ~~e~~~~~~~l~~qv~~~~~~ 133 (141)
T PRK08476 113 ANQKQELKEQLLSQMPEFKEA 133 (141)
T ss_pred HHHHHHHHHHHHHhHHHHHHH
No 408
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=78.97 E-value=33 Score=34.27 Aligned_cols=99 Identities=19% Similarity=0.271 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh-----------------hhhhhh
Q 010551 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE-----------------RSRCFK 449 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~-----------------~~~~~~ 449 (507)
+...+...+.-+.+++..+.+...+...++..++.++..+.+.+--+...+..++.- -+++.+
T Consensus 249 l~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~ 328 (384)
T PF03148_consen 249 LRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKE 328 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHH
Q 010551 450 LEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEM 485 (507)
Q Consensus 450 ~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~~ 485 (507)
++.-+..++++|.+.+ .|.+....+.+.+..+...+
T Consensus 329 l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL 368 (384)
T PF03148_consen 329 LRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSL 368 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 409
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=78.79 E-value=24 Score=29.72 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH-----------------HHHHHHHHH
Q 010551 412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-----------------TIENEVQIL 474 (507)
Q Consensus 412 ~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-----------------~le~e~~~~ 474 (507)
...|...++-.+...+....++...+.+++..+.++..|+....+..+++.... .|...+.+.
T Consensus 4 ~~rL~~vl~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q 83 (147)
T PRK05689 4 ASALATLLDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQ 83 (147)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHhhcc
Q 010551 475 RQQKSAFEQEMERATSV 491 (507)
Q Consensus 475 ~~~~~~~~~~~~~~~~~ 491 (507)
.+.+..++.+++..+..
T Consensus 84 ~~~v~~~~~~ve~~r~~ 100 (147)
T PRK05689 84 RQQLTQWTQKVDNARKY 100 (147)
T ss_pred HHHHHHHHHHHHHHHHH
No 410
>PRK11281 hypothetical protein; Provisional
Probab=78.78 E-value=17 Score=41.50 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh-------------hhhhhhhHHHH
Q 010551 388 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE-------------RSRCFKLEAQI 454 (507)
Q Consensus 388 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~-------------~~~~~~~e~~~ 454 (507)
.+...+.-+..-.+-....+..++.+.+++.++...+++.+..++++..+++.... +.++.++++++
T Consensus 58 ~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~L 137 (1113)
T PRK11281 58 DKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQL 137 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhhcccccCCCc
Q 010551 455 AELQKMLESSQ----TIENEVQILRQQKSAFEQEMERATSVQTQGSGG 498 (507)
Q Consensus 455 ~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~~~~~~~~~~q~~~g 498 (507)
++.++.+.... .++.+-++.|.++....+.+++.+.++....-+
T Consensus 138 q~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~ 185 (1113)
T PRK11281 138 QNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVG 185 (1113)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCC
No 411
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=78.73 E-value=16 Score=26.31 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551 392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 460 (507)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~ 460 (507)
..|......+...+.............+..+..+.....+++.....++.+++.+++-++.++.+...|
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 412
>PRK14011 prefoldin subunit alpha; Provisional
Probab=78.69 E-value=39 Score=28.44 Aligned_cols=97 Identities=11% Similarity=0.158 Sum_probs=0.0
Q ss_pred HhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh-------------------------------------
Q 010551 401 LELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE------------------------------------- 443 (507)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~------------------------------------- 443 (507)
+.+.+++.....+.++++++.+..++..++.-+.++..-.+.+
T Consensus 1 ~~~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy 80 (144)
T PRK14011 1 MNEELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDI 80 (144)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCe
Q ss_pred ------hhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhhcccccCCCc
Q 010551 444 ------RSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERATSVQTQGSGG 498 (507)
Q Consensus 444 ------~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~~~~~~~~~~q~~~g 498 (507)
.+....++..+.++++....+. ++.+++.+++++++..-++++ ++..|.++..+
T Consensus 81 ~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~-~~~~~~~~~~~ 144 (144)
T PRK14011 81 YLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIE-QRQAQMKPKTN 144 (144)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcccCCC
No 413
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=78.66 E-value=26 Score=38.54 Aligned_cols=102 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH-
Q 010551 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ- 465 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~- 465 (507)
+..+...++.+.+.+.+..........+|+.+..+...+..+...++........+..+++.+.+..++++..++..++
T Consensus 253 ~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~ 332 (1072)
T KOG0979|consen 253 YKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKK 332 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHHHHHhHHHHHHHHHHh
Q 010551 466 ---TIENEVQILRQQKSAFEQEMERA 488 (507)
Q Consensus 466 ---~le~e~~~~~~~~~~~~~~~~~~ 488 (507)
+.++.++++.+.+...+.++++.
T Consensus 333 ~~~~rq~~i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 333 AAEKRQKRIEKAKKMILDAQAELQET 358 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc
No 414
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=78.64 E-value=33 Score=37.52 Aligned_cols=99 Identities=18% Similarity=0.295 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH---
Q 010551 389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ--- 465 (507)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~--- 465 (507)
.++..++.+...........+..+..|+..+...+...+-+.-++..++.+++.....+.+.+.++...++.....+
T Consensus 301 ~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei 380 (775)
T PF10174_consen 301 SELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEI 380 (775)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------HHHHHHHHHHHhHHHHHHHHHH
Q 010551 466 --------TIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 466 --------~le~e~~~~~~~~~~~~~~~~~ 487 (507)
..+.++.+++.+++.++..+.+
T Consensus 381 ~~l~d~~d~~e~ki~~Lq~kie~Lee~l~e 410 (775)
T PF10174_consen 381 EDLRDMLDKKERKINVLQKKIENLEEQLRE 410 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 415
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=78.61 E-value=71 Score=31.45 Aligned_cols=244 Identities=14% Similarity=0.052 Sum_probs=0.0
Q ss_pred CCCCCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCC----CccCCceEEEEccCCceeeeccccccCC
Q 010551 1 MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRN----GRFLSDVQVFDLRSLAWSNLRLETELDA 76 (507)
Q Consensus 1 ~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~----~~~~~~~~~~d~~~~~W~~~~~~~~~~~ 76 (507)
|...++++|..+.+=...-..|..|..+.... +..||+.-.+.. +...+.+.+||+.+.+-..--..+..
T Consensus 25 ~~~~v~ViD~~~~~v~g~i~~G~~P~~~~spD----g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~-- 98 (352)
T TIGR02658 25 ATTQVYTIDGEAGRVLGMTDGGFLPNPVVASD----GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG-- 98 (352)
T ss_pred cCceEEEEECCCCEEEEEEEccCCCceeECCC----CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC--
Q ss_pred CccccCCCcCCCCCccc------eeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEE---
Q 010551 77 DKTEDSGLLEVLPPMSD------HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSV--- 147 (507)
Q Consensus 77 ~~~~~~~~~~~p~~r~~------~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~--- 147 (507)
||+. .....-+++..++.-.++... +-+.|+.+++--.-- +.|.+...+..
T Consensus 99 -------------p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~----V~VvD~~~~kvv~ei---~vp~~~~vy~t~e~ 158 (352)
T TIGR02658 99 -------------PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPA----VGVVDLEGKAFVRMM---DVPDCYHIFPTAND 158 (352)
T ss_pred -------------chhhccCccceEEECCCCCEEEEecCCCCCE----EEEEECCCCcEEEEE---eCCCCcEEEEecCC
Q ss_pred -----EEECCEEE---------------EEcC------CCC-----CC-----CccCcEEEEE-----CCCCc-EEEecc
Q 010551 148 -----TLVGSRLI---------------IFGG------EDR-----SR-----KLLNDVHFLD-----LETMT-WDAVEV 185 (507)
Q Consensus 148 -----~~~~~~iy---------------~~GG------~~~-----~~-----~~~n~~~~~d-----~~t~~-W~~~~~ 185 (507)
|.-+..+. +|-+ ... ++ .+.+.++..| +.... |..+..
T Consensus 159 ~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR02658 159 TFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTE 238 (352)
T ss_pred ccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccc
Q ss_pred CCCCCCCCCCc---eEEEEcCCEEEEEcCCCC----CCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--CC-e
Q 010551 186 TQTPPAPRYDH---SAALHANRYLIVFGGCSH----SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DE-N 255 (507)
Q Consensus 186 ~~~~p~~r~~~---~~~~~~~~~l~v~GG~~~----~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~-~ 255 (507)
......-|-+. .+..-+++.+||..-... ....+.++++|..+.+-.. ..+..+..+.+++- +. .
T Consensus 239 ~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~-----~i~vG~~~~~iavS~Dgkp~ 313 (352)
T TIGR02658 239 AEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR-----KIELGHEIDSINVSQDAKPL 313 (352)
T ss_pred cccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE-----EEeCCCceeeEEECCCCCeE
Q ss_pred EEEEeccCCCCCcceEEEEECCCCc
Q 010551 256 WYIVGGGDNNNGCQETIVLNMTKLA 280 (507)
Q Consensus 256 l~v~GG~~~~~~~~~~~~~d~~~~~ 280 (507)
+|+.-+ ..+++.++|..+.+
T Consensus 314 lyvtn~-----~s~~VsViD~~t~k 333 (352)
T TIGR02658 314 LYALST-----GDKTLYIFDAETGK 333 (352)
T ss_pred EEEeCC-----CCCcEEEEECcCCe
No 416
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=78.47 E-value=19 Score=30.80 Aligned_cols=76 Identities=12% Similarity=0.213 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 010551 413 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERA 488 (507)
Q Consensus 413 ~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~~~~~~~~~~ 488 (507)
++....+...-..++....+...+..++...+..+.+...++..++..-...++|+++++.++.......++.+..
T Consensus 2 eqi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~ 77 (155)
T PF06810_consen 2 EQIDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAK 77 (155)
T ss_pred hHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
No 417
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=78.46 E-value=7 Score=30.67 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred ccccchhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHH
Q 010551 383 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI 454 (507)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~ 454 (507)
++..+..+...|+.++..+........++..+|+..+.... ..+.+++.+...++..+.++.....++.+|
T Consensus 36 tv~~ye~~~~~LeqEr~Q~~q~~e~~~Rev~~L~~~L~~~~-~~e~LE~~M~kaqe~~e~Lrs~v~p~e~eI 106 (106)
T PF03528_consen 36 TVSEYETQWSLLEQERLQWQQYRESEEREVAKLQRRLREGQ-ELENLEKSMKKAQEDEEKLRSVVMPMEQEI 106 (106)
T ss_dssp --------------------------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-hHHHHHHHHHHHHhHHHHHHHhcccccccC
No 418
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.40 E-value=50 Score=29.61 Aligned_cols=100 Identities=18% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH-HHHHHHH
Q 010551 394 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQ 472 (507)
Q Consensus 394 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-~le~e~~ 472 (507)
++..++.+...+.+--+...+.+++.+.+...+.+-+-++..+..-+++.+.+...+++++-..++++.... -+|...+
T Consensus 35 ~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lke 114 (246)
T KOG4657|consen 35 IQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKE 114 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHhhcccc
Q 010551 473 ILRQQKSAFEQEMERATSVQT 493 (507)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~ 493 (507)
++-..++.+.+.++-+...++
T Consensus 115 E~dd~keiIs~kr~~~~Ka~e 135 (246)
T KOG4657|consen 115 EKDDSKEIISQKRQALSKAKE 135 (246)
T ss_pred HhhhHHHHHHHHHHHHHHHHH
No 419
>PRK01156 chromosome segregation protein; Provisional
Probab=78.38 E-value=25 Score=39.67 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHH
Q 010551 389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE 468 (507)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le 468 (507)
.....-......+...+.....+...+.+++.+....+.++.++++....++...+..+..++..+..+.....+...++
T Consensus 176 ~~~~~ei~~le~~~~~l~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~~l~~l~~~~~~~~~~e 255 (895)
T PRK01156 176 DMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYE 255 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHhhcccc
Q 010551 469 NEVQILRQQKSAFEQEMERATSVQT 493 (507)
Q Consensus 469 ~e~~~~~~~~~~~~~~~~~~~~~~~ 493 (507)
+++.++...+..+++.+++......
T Consensus 256 ~~i~ele~~l~el~~~~~el~~~~~ 280 (895)
T PRK01156 256 SEIKTAESDLSMELEKNNYYKELEE 280 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 420
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=78.38 E-value=25 Score=29.83 Aligned_cols=90 Identities=16% Similarity=0.215 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHh-----hhhHHHHhhhhhhHHH---HHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHH
Q 010551 385 KDVRTDIDAIKEDKRVLE-----LSLTEVRTENSRFREK---IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAE 456 (507)
Q Consensus 385 ~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~l~~~---l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e 456 (507)
..|..+++..+..+.+.. ..+.....-.+.++.. .+.+..+++.+++++.+.+.+++.++++..+|+.++..
T Consensus 57 kqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~ 136 (161)
T TIGR02894 57 KQYEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLST 136 (161)
T ss_pred HHHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 010551 457 LQKMLESSQTIENEVQIL 474 (507)
Q Consensus 457 ~~~~~~~~~~le~e~~~~ 474 (507)
.++.-+.+-....+..++
T Consensus 137 ~~eDY~~L~~Im~RARkl 154 (161)
T TIGR02894 137 IEEDYQTLIDIMDRARKL 154 (161)
T ss_pred HHHHHHHHHHHHHHHHHH
No 421
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=78.38 E-value=32 Score=30.21 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 010551 398 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQ 477 (507)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~ 477 (507)
|+-+-+......--..+|.+.+-....+.--..-|.-.+-.-+....+..+++=....|..+.++.++.|+++++.-.+.
T Consensus 10 rerLL~~~dDlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~ 89 (272)
T KOG4552|consen 10 RERLLESADDLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEV 89 (272)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHH
Q ss_pred HHHHHHHHHHhhccc
Q 010551 478 KSAFEQEMERATSVQ 492 (507)
Q Consensus 478 ~~~~~~~~~~~~~~~ 492 (507)
+|++++.|.++...+
T Consensus 90 IQqLqk~LK~aE~iL 104 (272)
T KOG4552|consen 90 IQQLQKNLKSAEVIL 104 (272)
T ss_pred HHHHHHHHHHHHHHH
No 422
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=78.33 E-value=45 Score=32.07 Aligned_cols=112 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh----------------hhhhhhhH
Q 010551 388 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE----------------RSRCFKLE 451 (507)
Q Consensus 388 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~----------------~~~~~~~e 451 (507)
.......+...............+..++..++..++.++.++++++.........+ +++..+++
T Consensus 113 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~ 192 (301)
T PF14362_consen 113 KLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLD 192 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHH----HHHHhHHHHHHHHHHhhcccccCCCce
Q 010551 452 AQIAELQKMLESSQTIENEVQ----ILRQQKSAFEQEMERATSVQTQGSGGV 499 (507)
Q Consensus 452 ~~~~e~~~~~~~~~~le~e~~----~~~~~~~~~~~~~~~~~~~~~q~~~g~ 499 (507)
...++++.-..+.+..+.++. ...++++...+......+.......|.
T Consensus 193 ~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~G~ 244 (301)
T PF14362_consen 193 AAQAELDTLQAQIDAAIAALDAQIAARKARLDEARQAKVAEFQAIISANDGF 244 (301)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHhhccCCCH
No 423
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=78.24 E-value=36 Score=34.77 Aligned_cols=100 Identities=12% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 470 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e 470 (507)
+...+.+.-+.+..+.+...-.....+...++.+++.+..+..++.+.+-+..+.+.++..++..+.++++++.+++-.+
T Consensus 177 ~~~~~~r~~e~Q~qv~qsl~~el~~i~~~~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~ 256 (591)
T KOG2412|consen 177 RKEVKRRLLEEQNQVLQSLDTELQAIQREKQRKEQIRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAE 256 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHhhccc
Q 010551 471 VQILRQQKSAFEQEMERATSVQ 492 (507)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~ 492 (507)
.+. ++.++.+-+.+++.+.|
T Consensus 257 eek--qeee~ke~e~~~~k~~q 276 (591)
T KOG2412|consen 257 EEK--QEEERKEAEEQAEKEVQ 276 (591)
T ss_pred HHH--HHHHHHHHHHHHHHHhc
No 424
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=78.19 E-value=34 Score=27.53 Aligned_cols=100 Identities=18% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh-hhhhhhhHHHHHHHHHHHHhHH-----HHHHHH
Q 010551 398 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE-RSRCFKLEAQIAELQKMLESSQ-----TIENEV 471 (507)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~-~~~~~~~e~~~~e~~~~~~~~~-----~le~e~ 471 (507)
|..+...+.........+...+..++.....++...+..+.+.... .+-..-|+..-.++-.++.... .+....
T Consensus 2 k~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~ 81 (127)
T smart00502 2 REALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQL 81 (127)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHhhcccccCCC
Q 010551 472 QILRQQKSAFEQEMERATSVQTQGSG 497 (507)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~q~~~ 497 (507)
+++...+..+..-.+..+....++..
T Consensus 82 ~~l~~~l~~l~~~~~~~e~~l~~~~~ 107 (127)
T smart00502 82 ESLTQKQEKLSHAINFTEEALNSGDP 107 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
No 425
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=78.07 E-value=24 Score=36.67 Aligned_cols=101 Identities=14% Similarity=0.233 Sum_probs=0.0
Q ss_pred hhHHHHhhhhhhHHHHHH---------------------hhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHH
Q 010551 404 SLTEVRTENSRFREKIDE---------------------VNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 404 ~~~~~~~~~~~l~~~l~~---------------------~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
.+...+.+.+.+++.+.+ +...+.+.+.++...+.++..+++.+.++++++..+-....
T Consensus 276 ~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 355 (498)
T TIGR03007 276 DVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEA 355 (498)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhcccc---cCCCceeeeec
Q 010551 463 SSQTIENEVQILRQQKSAFEQEMERATSVQT---QGSGGVWRWIA 504 (507)
Q Consensus 463 ~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~---q~~~g~~~~~~ 504 (507)
+...|+++.+..++.-+.+.+.+++++..+. ....+.|+=|.
T Consensus 356 el~~L~Re~~~~~~~Y~~l~~r~eea~~~~~~~~~~~~~~i~vi~ 400 (498)
T TIGR03007 356 ELTQLNRDYEVNKSNYEQLLTRRESAEVSKQMEVQDKAVSFRIID 400 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCceEEEeC
No 426
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=78.04 E-value=14 Score=34.22 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=0.0
Q ss_pred hHHHhHHHHHhhHHHh--hhhhhhhHHHHHHHHHH--------HHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccccCCC
Q 010551 428 ELSKELSSVQGQLVAE--RSRCFKLEAQIAELQKM--------LESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSG 497 (507)
Q Consensus 428 e~~~el~~~~~~~~~~--~~~~~~~e~~~~e~~~~--------~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~q~~~ 497 (507)
|.++-|+.+-.+|.+. ..|-.+-|..|++.-++ -|.+--+|..++++++++++||.++++.+..+.++++
T Consensus 4 eE~qLI~~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q~~~~~~~~~g 83 (247)
T PF09849_consen 4 EERQLIDDLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQAQAPQAQSSG 83 (247)
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q ss_pred ce
Q 010551 498 GV 499 (507)
Q Consensus 498 g~ 499 (507)
|+
T Consensus 84 gF 85 (247)
T PF09849_consen 84 GF 85 (247)
T ss_pred cc
No 427
>PRK01156 chromosome segregation protein; Provisional
Probab=77.99 E-value=26 Score=39.57 Aligned_cols=107 Identities=8% Similarity=0.094 Sum_probs=0.0
Q ss_pred cccchhhHHHHHHHHHHHhh---hhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551 384 EKDVRTDIDAIKEDKRVLEL---SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 460 (507)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~ 460 (507)
...+......+......++. .+.....+...+...+...+.++.+...++..+..+++..+.....++.++..++.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~ei~~le~~~~~l~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~~ 240 (895)
T PRK01156 161 INSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSA 240 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 010551 461 LESSQTIENEVQILRQQKSAFEQEMERATS 490 (507)
Q Consensus 461 ~~~~~~le~e~~~~~~~~~~~~~~~~~~~~ 490 (507)
+..+..++.+...+.+++..++..+.+...
T Consensus 241 l~~l~~~~~~~~~~e~~i~ele~~l~el~~ 270 (895)
T PRK01156 241 LNELSSLEDMKNRYESEIKTAESDLSMELE 270 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 428
>PRK02119 hypothetical protein; Provisional
Probab=77.82 E-value=10 Score=27.68 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
+...+...+.+++..+.-.+.-+++.-..+-++++.+..++++++.+.++++..+
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 429
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=77.69 E-value=34 Score=36.21 Aligned_cols=103 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH----H
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----T 466 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~ 466 (507)
.+.+.....++++.-.+...-.++++...+-.++-.....+-++...++.++-.++...|++++...++++.+.+ +
T Consensus 162 eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~r 241 (916)
T KOG0249|consen 162 EERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDK 241 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcccc
Q 010551 467 IENEVQILRQQKSAFEQEMERATSVQT 493 (507)
Q Consensus 467 le~e~~~~~~~~~~~~~~~~~~~~~~~ 493 (507)
+...++.+++++.++++...+.++..+
T Consensus 242 l~~d~E~Lr~e~~qL~~~~~~~~~~mr 268 (916)
T KOG0249|consen 242 LRTDIEDLRGELDQLRRSSLEKEQELR 268 (916)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhhhhhc
No 430
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=77.68 E-value=33 Score=35.31 Aligned_cols=107 Identities=12% Similarity=0.135 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH-
Q 010551 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ- 465 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~- 465 (507)
+..+++.|+....+.........+...+|+.++...++-.....+++..++.++-..++..+..++++.|..+.+.++.
T Consensus 419 ~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~ 498 (607)
T KOG0240|consen 419 LTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAV 498 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----HHHHHHHHHHHhHHHHHHHHHHhhcccc
Q 010551 466 ----TIENEVQILRQQKSAFEQEMERATSVQT 493 (507)
Q Consensus 466 ----~le~e~~~~~~~~~~~~~~~~~~~~~~~ 493 (507)
.+++....+.+..+...+++++....|.
T Consensus 499 ~~~~~~~~~~~~~~~n~~sel~sl~~~~~~~~ 530 (607)
T KOG0240|consen 499 NYDQKSEEKESKLSQNLKSELQSLQEPSEHQS 530 (607)
T ss_pred hhhHHHHHHhhhhhhhhHHHHHhhhhcccchh
No 431
>PRK09343 prefoldin subunit beta; Provisional
Probab=77.63 E-value=37 Score=27.61 Aligned_cols=92 Identities=17% Similarity=0.130 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHh---------------HHHHHhhHHHhhhhhhhhH
Q 010551 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE---------------LSSVQGQLVAERSRCFKLE 451 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~e---------------l~~~~~~~~~~~~~~~~~e 451 (507)
++.+++..-..-..++..+.....+...+..++.+.+..++|+..- .+....-...++++.+.++
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie 84 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLE 84 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 010551 452 AQIAELQKMLESSQTIENEVQILRQQK 478 (507)
Q Consensus 452 ~~~~e~~~~~~~~~~le~e~~~~~~~~ 478 (507)
..+..++++...+++.-++.+.-.+++
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 432
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=77.51 E-value=41 Score=32.01 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHH
Q 010551 389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE 468 (507)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le 468 (507)
.+..........+.+.+....++....+++|..+..++-++++.+++.-.+++.++..+...+.....+..+++..++.-
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHH
Q 010551 469 NEVQILRQQKSAFEQEM 485 (507)
Q Consensus 469 ~e~~~~~~~~~~~~~~~ 485 (507)
.+......+-+...+.+
T Consensus 286 ~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 286 AECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHh
No 433
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=77.51 E-value=13 Score=33.13 Aligned_cols=68 Identities=22% Similarity=0.314 Sum_probs=0.0
Q ss_pred hhHHHHHHhhccchhHHHhHHHHHhhHHH-hhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 010551 414 RFREKIDEVNSTHSELSKELSSVQGQLVA-ERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQE 484 (507)
Q Consensus 414 ~l~~~l~~~~~~~~e~~~el~~~~~~~~~-~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~~~~~~ 484 (507)
.+-.++...+...+...++.+......+. .+++..+++.+++++++++.+ .+++.+.+.+|.+.+++|
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~---~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK---KEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
No 434
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=77.50 E-value=30 Score=29.13 Aligned_cols=77 Identities=12% Similarity=0.190 Sum_probs=0.0
Q ss_pred hhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH-----------------HHHHHHHHHHH
Q 010551 414 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-----------------TIENEVQILRQ 476 (507)
Q Consensus 414 ~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-----------------~le~e~~~~~~ 476 (507)
.|...++-.+...+....+|...+..++..+.++..|++...+..+++.... .|...+.+.++
T Consensus 6 rL~~vL~l~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~ 85 (146)
T PRK07720 6 RLQKVLELKENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQL 85 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHhhc
Q 010551 477 QKSAFEQEMERATS 490 (507)
Q Consensus 477 ~~~~~~~~~~~~~~ 490 (507)
.+..++.+++..+.
T Consensus 86 ~v~~~~~~ve~~r~ 99 (146)
T PRK07720 86 LVMQAREQMNRKQQ 99 (146)
T ss_pred HHHHHHHHHHHHHH
No 435
>PTZ00420 coronin; Provisional
Probab=77.45 E-value=1e+02 Score=32.64 Aligned_cols=343 Identities=10% Similarity=0.040 Sum_probs=0.0
Q ss_pred CcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCC---------cEEEeecCCCCCCCCcCcEEEEECCEE
Q 010551 84 LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---------LCGVMETSGKVPVTRGGHSVTLVGSRL 154 (507)
Q Consensus 84 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~---------~W~~~~~~g~~p~~r~~~~~~~~~~~i 154 (507)
..++..+....+....++.+++.||.+.. +.+||+.++ ....+. .-.......+....+..+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~Dgt------IrIWDi~t~~~~~~~i~~p~~~L~---gH~~~V~sVaf~P~g~~i 140 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLT------IRVWEIPHNDESVKEIKDPQCILK---GHKKKISIIDWNPMNYYI 140 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCe------EEEEECCCCCccccccccceEEee---cCCCcEEEEEECCCCCeE
Q ss_pred EEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEec
Q 010551 155 IIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP 234 (507)
Q Consensus 155 y~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~ 234 (507)
++.||.+.. +.++|+.+..=... ...+..-.++....++.+++.++.+ ..+.+||+.++.-...
T Consensus 141 LaSgS~Dgt------IrIWDl~tg~~~~~-----i~~~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~i~t 204 (568)
T PTZ00420 141 MCSSGFDSF------VNIWDIENEKRAFQ-----INMPKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEIASS 204 (568)
T ss_pred EEEEeCCCe------EEEEECCCCcEEEE-----EecCCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcEEEE
Q ss_pred ccCCCCCCCCCccEEEEE----CCeEEEEeccCCCCCcceEEEEECC-CCcEEEeccCCCCCCCCCCCCceEEEEEcCce
Q 010551 235 EIKGDLVTGRAGHAGITI----DENWYIVGGGDNNNGCQETIVLNMT-KLAWSILTSVKGRNPLASEGLSVCSAIIEGEH 309 (507)
Q Consensus 235 ~~~~~~p~~r~~~~~~~~----~~~l~v~GG~~~~~~~~~~~~~d~~-~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (507)
............+.. .+.-+++-++........+.++|+. ...-.....+... .........+...
T Consensus 205 ---l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~------~~~L~p~~D~~tg 275 (568)
T PTZ00420 205 ---FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA------SAPLIPHYDESTG 275 (568)
T ss_pred ---EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC------ccceEEeeeCCCC
Q ss_pred EEEEEccCCCCcCceEEEEECCCCC------------CCCCcccCCchhhhhccchhHHHHhhccccccCcccccccccc
Q 010551 310 HLVAFGGYNGKYNNEVFVMRLKPRD------------IPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTLSSKFAG 377 (507)
Q Consensus 310 ~l~v~GG~~~~~~~~~~~~~~~~~~------------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (507)
.+|+.|.-+ +.+.+|++.... -.....+|.+..-...+-+..++.+........-...+.+...
T Consensus 276 ~l~lsGkGD----~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~~dv~~cEi~R~~kl~~~~~i~pisf~vPRk~~ 351 (568)
T PTZ00420 276 LIYLIGKGD----GNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQICDVYKCEIGRVYKNENNSSIRPISFYVPRKNP 351 (568)
T ss_pred CEEEEEECC----CeEEEEEccCCcEEeecccccCCCccceEEccccccCchhhhHhHHhhhcCCCeEEEEEEEeccCCc
Q ss_pred --------CCCCcccccchhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhh-hh
Q 010551 378 --------IGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSR-CF 448 (507)
Q Consensus 378 --------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~-~~ 448 (507)
.......-.+..+.----..+.-....+...........+....+ .+..+.-..-++.+.+.+.++++ ..
T Consensus 352 ~~Fq~DlyP~t~~~~pa~ta~eW~~G~~~~p~~~sl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (568)
T PTZ00420 352 TKFQEDLYPPILMHDPERSSRNWIDGKDNKMKRINIKDLTEDDLRITKKYKFV-PQSFNSIIIGENYTSKRTSIIRQFTK 430 (568)
T ss_pred hhcccccCCCCCCCCcccCHHHHhCCCCCCCcEEeccccccccchhhhhhccc-ccccccccCcchhhHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHhHH
Q 010551 449 KLEAQIAELQKMLESSQ 465 (507)
Q Consensus 449 ~~e~~~~e~~~~~~~~~ 465 (507)
.|+.++++++.++++++
T Consensus 431 ~~~~~~~~~~~~~~~~~ 447 (568)
T PTZ00420 431 KFTFFKKGEHNDGFSSV 447 (568)
T ss_pred HHHHHHhhhHHHHHHhh
No 436
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=77.44 E-value=28 Score=34.27 Aligned_cols=100 Identities=21% Similarity=0.250 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH---
Q 010551 389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ--- 465 (507)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~--- 465 (507)
..++..+....++++.+.+.+.+.....-+-..+++.+.|.-+ |.+.++-.+.++.+ .++|+.-.++++-+++.+
T Consensus 252 e~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~r-l~elreg~e~e~~r-kelE~lR~~L~kAEkele~nS 329 (575)
T KOG4403|consen 252 EGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPR-LSELREGVENETSR-KELEQLRVALEKAEKELEANS 329 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhh-hhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHhcc
Q ss_pred --------------HHHHHHHHHHHhHHHHHHHHHHhhc
Q 010551 466 --------------TIENEVQILRQQKSAFEQEMERATS 490 (507)
Q Consensus 466 --------------~le~e~~~~~~~~~~~~~~~~~~~~ 490 (507)
.-|-|.+=++++.+.-++|+.++.+
T Consensus 330 ~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake 368 (575)
T KOG4403|consen 330 SWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKE 368 (575)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 437
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=77.43 E-value=15 Score=36.41 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh---------hhhhhhhHHHHHHHHHHHHhHH-----------
Q 010551 406 TEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE---------RSRCFKLEAQIAELQKMLESSQ----------- 465 (507)
Q Consensus 406 ~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~---------~~~~~~~e~~~~e~~~~~~~~~----------- 465 (507)
...+....-+++++++.+.++.+.+++++..+.++... -+.+.+++.++.+++.++..+.
T Consensus 166 ~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~ 245 (362)
T TIGR01010 166 RARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVP 245 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchH
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 010551 466 TIENEVQILRQQKSAFEQEM 485 (507)
Q Consensus 466 ~le~e~~~~~~~~~~~~~~~ 485 (507)
.++.++..++++++...+.+
T Consensus 246 ~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 246 SLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHh
No 438
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=77.41 E-value=28 Score=35.20 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH
Q 010551 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 464 (507)
Q Consensus 385 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~ 464 (507)
.........++++.......+....+++.+|..+|..+++++.....|.++....++.-+.+-.+++.++.|++.+..+.
T Consensus 208 rdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~ 287 (596)
T KOG4360|consen 208 RDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAEC 287 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhH
Q 010551 465 QTIENEVQILRQQK 478 (507)
Q Consensus 465 ~~le~e~~~~~~~~ 478 (507)
-....|-++-.+.+
T Consensus 288 m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 288 MQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHhh
No 439
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=77.39 E-value=11 Score=27.10 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhh
Q 010551 442 AERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 442 ~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~~~~~~ 489 (507)
..++|+.+||.+++-.+.-+.++. +.++++..+++++..+.+.+.+.+
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 440
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=77.14 E-value=22 Score=28.11 Aligned_cols=68 Identities=22% Similarity=0.419 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhc---cchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHH
Q 010551 390 DIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNS---THSELSKELSSVQGQLVAERSRCFKLEAQIAEL 457 (507)
Q Consensus 390 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~ 457 (507)
++-.+..+++.+...+...+.+...+.+++..... ..+++..+...+..++...++.+.+++.++.++
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 441
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=77.13 E-value=14 Score=29.62 Aligned_cols=67 Identities=24% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHH------hhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHh
Q 010551 395 KEDKRVLELSLTEVR------TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 463 (507)
Q Consensus 395 ~~~~~~~~~~~~~~~------~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~ 463 (507)
+.+...++..+.+.+ .-..+.+.++.+.+.++.+.+.+|++.+..-.. +++.+.+..+.|-+.+|++
T Consensus 42 ~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~--~KI~K~~~KL~ea~~eL~~ 114 (115)
T PF06476_consen 42 QHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDS--DKIAKRQKKLAEAKAELKE 114 (115)
T ss_pred HHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHhh
No 442
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=76.96 E-value=9.6 Score=28.58 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHhhHHHhhhhhhhhHHHHHHHHHHHHhHH-------HHHHHHHHHHHhHHHHHHHHHHhh
Q 010551 436 VQGQLVAERSRCFKLEAQIAELQKMLESSQ-------TIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 436 ~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-------~le~e~~~~~~~~~~~~~~~~~~~ 489 (507)
+..|.+..++++......++..+.+|...+ .+++|...+..++...|++|..++
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLR 63 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHH
No 443
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=76.85 E-value=36 Score=27.09 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHh---------------HHHHHhhHHHhhhhhhhhH
Q 010551 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE---------------LSSVQGQLVAERSRCFKLE 451 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~e---------------l~~~~~~~~~~~~~~~~~e 451 (507)
++-+++.+...-..+...+.....+...+...+.+.+..++++..- .+.+..-...++++...++
T Consensus 1 ~~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie 80 (110)
T TIGR02338 1 IPPQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLE 80 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 010551 452 AQIAELQKMLESSQTIENEVQILRQQK 478 (507)
Q Consensus 452 ~~~~e~~~~~~~~~~le~e~~~~~~~~ 478 (507)
..+..+++++..+++.-++++...+++
T Consensus 81 ~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 81 LRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 444
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=76.80 E-value=24 Score=37.59 Aligned_cols=99 Identities=19% Similarity=0.292 Sum_probs=0.0
Q ss_pred ccccchhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHH
Q 010551 383 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
+.......+..++++.+-+.........+...+++.++...+...+..+.+...+.++++-..++.+++.++++...++.
T Consensus 518 ~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele 597 (698)
T KOG0978|consen 518 SVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELE 597 (698)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHH----HHHHHHHHHHHhHHHH
Q 010551 463 SSQ----TIENEVQILRQQKSAF 481 (507)
Q Consensus 463 ~~~----~le~e~~~~~~~~~~~ 481 (507)
... .+|.+.+.+...+...
T Consensus 598 ~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 598 IEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
No 445
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=76.76 E-value=27 Score=36.54 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=0.0
Q ss_pred ccccchhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHH
Q 010551 383 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
.......+...|+.....+...+...+.+...+++...........++.+|...+.+++..+....+......++...|+
T Consensus 296 ~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lq 375 (522)
T PF05701_consen 296 ELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQ 375 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Q ss_pred hHH----HHHHHHHHHHHhHHHHHHHHHHhhc
Q 010551 463 SSQ----TIENEVQILRQQKSAFEQEMERATS 490 (507)
Q Consensus 463 ~~~----~le~e~~~~~~~~~~~~~~~~~~~~ 490 (507)
++. ...++....+.+...+..+.+....
T Consensus 376 ql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 376 QLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 446
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=76.69 E-value=42 Score=32.74 Aligned_cols=106 Identities=9% Similarity=0.036 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh------hhhhhhhHHHHHHHHHHHH
Q 010551 389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE------RSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~------~~~~~~~e~~~~e~~~~~~ 462 (507)
..+..+..+...+.....-.....+.-++.++..+..........++...++... +++..++.+.-++..++..
T Consensus 21 ~~qk~l~~~~~l~~~~~k~~~~~e~~~~k~~~~~~~~~~~~~~~~~~~~~~la~~G~g~~~~~r~~~~~~i~~~~~~q~~ 100 (332)
T TIGR01541 21 ADEKSLQSRSDEIIALIKLEKLLEEAERKALEALKKLAEATASIRAQNKRQLDRFGLGDKQRERLDARLQIDRTFRKQQR 100 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHH-----HHHHHHhHHHHHHHHHHhhccccc
Q 010551 463 SSQTIENE-----VQILRQQKSAFEQEMERATSVQTQ 494 (507)
Q Consensus 463 ~~~~le~e-----~~~~~~~~~~~~~~~~~~~~~~~q 494 (507)
++.+.-.. ..+++++++.+...+++.-..++.
T Consensus 101 ~l~~~~~~~~~~s~~~y~~~~~~l~~~l~~~l~~~~~ 137 (332)
T TIGR01541 101 DLNKAMTAKGLAGSDLYKEQLAAIKAALNEALAELHA 137 (332)
T ss_pred HHHHhhhhccccCHHHHHHHHHHHHHHHHHHHHHHHH
No 447
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=76.63 E-value=11 Score=38.66 Aligned_cols=70 Identities=16% Similarity=0.285 Sum_probs=0.0
Q ss_pred chhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHH----------HHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccccC
Q 010551 426 HSELSKELSSVQGQLVAERSRCFKLEAQIAELQK----------MLESSQTIENEVQILRQQKSAFEQEMERATSVQTQG 495 (507)
Q Consensus 426 ~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~----------~~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~q~ 495 (507)
..++.++++.++.++++.++++.+++..+..+++ +.+..+++.+...++.++++.+++++++++...++.
T Consensus 329 ~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 329 RPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 448
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=76.59 E-value=1.1e+02 Score=33.83 Aligned_cols=157 Identities=17% Similarity=0.089 Sum_probs=0.0
Q ss_pred EEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEE---------------------EECCE
Q 010551 97 VKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVT---------------------LVGSR 153 (507)
Q Consensus 97 ~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~---------------------~~~~~ 153 (507)
+++++.||+... .+.++.+|..|++ |+.-.. ........+.+| ...+.
T Consensus 191 lvvgg~lYv~t~-------~~~V~ALDa~TGk~lW~~d~~--~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~ 261 (764)
T TIGR03074 191 LKVGDTLYLCTP-------HNKVIALDAATGKEKWKFDPK--LKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR 261 (764)
T ss_pred EEECCEEEEECC-------CCeEEEEECCCCcEEEEEcCC--CCcccccccccccceEEecCCcccccccccccccccCC
Q ss_pred EEEEcCCCCCCCccCcEEEEECCCCc--EE--------EeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCC-----CCC
Q 010551 154 LIIFGGEDRSRKLLNDVHFLDLETMT--WD--------AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS-----IFF 218 (507)
Q Consensus 154 iy~~GG~~~~~~~~n~~~~~d~~t~~--W~--------~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~-----~~~ 218 (507)
.++++..+.. ++.+|..|++ |. --...++.+......+..-+--+.++|+|+.... ...
T Consensus 262 rV~~~T~Dg~------LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~ 335 (764)
T TIGR03074 262 RIILPTSDAR------LIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPS 335 (764)
T ss_pred EEEEecCCCe------EEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCC
Q ss_pred CcEEEEECCCCc--EEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCC
Q 010551 219 NDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL 279 (507)
Q Consensus 219 ~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~ 279 (507)
..|.-||..|++ |..-...+....+.. .+..|..||.+.- ....||++++
T Consensus 336 G~I~A~Da~TGkl~W~~~~g~p~~~~~~~-------~g~~~~~gg~n~W----~~~s~D~~~g 387 (764)
T TIGR03074 336 GVIRAFDVNTGALVWAWDPGNPDPTAPPA-------PGETYTRNTPNSW----SVASYDEKLG 387 (764)
T ss_pred cEEEEEECCCCcEeeEEecCCCCcccCCC-------CCCEeccCCCCcc----CceEEcCCCC
No 449
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=76.57 E-value=21 Score=27.83 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHH----hhhhHHHHhhhhhhHHHHHHhhccchhH-HHhHHHHHhhHH--------HhhhhhhhhHHHHHHHH
Q 010551 392 DAIKEDKRVL----ELSLTEVRTENSRFREKIDEVNSTHSEL-SKELSSVQGQLV--------AERSRCFKLEAQIAELQ 458 (507)
Q Consensus 392 ~~l~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~e~-~~el~~~~~~~~--------~~~~~~~~~e~~~~e~~ 458 (507)
++++.-..++ +....+.+.-.+.|.++++....++++. .++++.+-+.+. .+++++..|+++++.++
T Consensus 24 ek~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Le 103 (108)
T COG3937 24 EKVQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLE 103 (108)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHh
Q 010551 459 KMLES 463 (507)
Q Consensus 459 ~~~~~ 463 (507)
.++++
T Consensus 104 nk~kr 108 (108)
T COG3937 104 NKLKR 108 (108)
T ss_pred HHhcC
No 450
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=76.41 E-value=54 Score=31.93 Aligned_cols=110 Identities=13% Similarity=0.173 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh-----------------------
Q 010551 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE----------------------- 443 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~----------------------- 443 (507)
+..+++.++.+.+.+.+.+.+.=.++.-|-+.+++.+..+..-.++-|+...++|.+
T Consensus 419 yleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtG 498 (593)
T KOG4807|consen 419 YLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTG 498 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCC
Q ss_pred -------------------hhhhhhhHHHHHHHHHHHHhHH---------------HHHHHHHHHHHhHHHHHHHHHHhh
Q 010551 444 -------------------RSRCFKLEAQIAELQKMLESSQ---------------TIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 444 -------------------~~~~~~~e~~~~e~~~~~~~~~---------------~le~e~~~~~~~~~~~~~~~~~~~ 489 (507)
+..++.|+++++-++-+||.+. +|--......-.++++.++|.-+.
T Consensus 499 splaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqLkaAt 578 (593)
T KOG4807|consen 499 SPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQLKAAT 578 (593)
T ss_pred CccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHHHHHH
Q ss_pred cccccCC
Q 010551 490 SVQTQGS 496 (507)
Q Consensus 490 ~~~~q~~ 496 (507)
..+-.++
T Consensus 579 eALgEKs 585 (593)
T KOG4807|consen 579 EALGEKS 585 (593)
T ss_pred HHhcccC
No 451
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=76.32 E-value=13 Score=38.08 Aligned_cols=69 Identities=23% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHH----------HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010551 419 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEA----------QIAELQKMLESSQTIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 419 l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~----------~~~e~~~~~~~~~~le~e~~~~~~~~~~~~~~~~~ 487 (507)
...+.+++++++++++..+.++++.++.+.+++. ..+..++-.+...++.++++++..++..++++++.
T Consensus 329 ~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 329 RPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 452
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=76.09 E-value=40 Score=34.76 Aligned_cols=102 Identities=16% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 010551 394 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQI 473 (507)
Q Consensus 394 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~ 473 (507)
.++....+++......++..+...++.......++++.++.+...-+...+...+.++.+..++++..+..++.+++.-+
T Consensus 412 ~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~ 491 (607)
T KOG0240|consen 412 LEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLT 491 (607)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHH-HHHHHHHHhhcccccC
Q 010551 474 LRQQKS-AFEQEMERATSVQTQG 495 (507)
Q Consensus 474 ~~~~~~-~~~~~~~~~~~~~~q~ 495 (507)
+..++. ...+-+++......|.
T Consensus 492 al~el~~~~~~~~~~~~~~~~~n 514 (607)
T KOG0240|consen 492 ALEELAVNYDQKSEEKESKLSQN 514 (607)
T ss_pred HHHHHHHhhhHHHHHHhhhhhhh
No 453
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=76.04 E-value=48 Score=28.17 Aligned_cols=89 Identities=10% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHhhhhhhH--------HHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHH
Q 010551 398 KRVLELSLTEVRTENSRFR--------EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIEN 469 (507)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~--------~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~ 469 (507)
+...++.++....+-.+.. ..+=..-..+.+.....+..+.+++.+++...+|++++.+++++ .++|++
T Consensus 56 RkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e---~~~L~~ 132 (161)
T TIGR02894 56 RKQYEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKE---LEKLRQ 132 (161)
T ss_pred HHHHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHhh
Q 010551 470 EVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 470 e~~~~~~~~~~~~~~~~~~~ 489 (507)
+++.+++.-+.+-.-+++++
T Consensus 133 ~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 133 RLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 454
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=76.03 E-value=15 Score=38.86 Aligned_cols=111 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred CcccccchhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551 381 DLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 460 (507)
Q Consensus 381 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~ 460 (507)
+.....+....+.+....+++...+..-.....--...+++++..+..+.+..+......+...+...+++.++.++...
T Consensus 265 d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~ 344 (563)
T TIGR00634 265 DGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDS 344 (563)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCC
Q ss_pred HHhHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 010551 461 LESSQTIENEVQILRQQKSAFEQEMERATSV 491 (507)
Q Consensus 461 ~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~ 491 (507)
...++++++++.++.++...+-+++-..+..
T Consensus 345 ~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 345 DESLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 455
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=76.00 E-value=22 Score=30.37 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred HhHHHHHhhHHHhhhhhhhhHHHHHHHH---------HHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccccC
Q 010551 431 KELSSVQGQLVAERSRCFKLEAQIAELQ---------KMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQG 495 (507)
Q Consensus 431 ~el~~~~~~~~~~~~~~~~~e~~~~e~~---------~~~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~q~ 495 (507)
.|++.++.-++..++...++|+-+-..+ ++-.++++|+.-.+.++++++.||.+|++--...++.
T Consensus 105 ~Elq~mr~~ln~FR~qm~dlE~~l~~QQalvy~hMSeeER~EaeQLQsLR~avRqElqELE~QL~DRl~~l~e~ 178 (179)
T PF14723_consen 105 QELQQMRRSLNSFREQMMDLELHLMRQQALVYRHMSEEEREEAEQLQSLRSAVRQELQELEFQLEDRLLQLREQ 178 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
No 456
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=75.95 E-value=50 Score=28.36 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh--hhhhhhhHHHHHHHHHHHHhHH-HH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE--RSRCFKLEAQIAELQKMLESSQ-TI 467 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~--~~~~~~~e~~~~e~~~~~~~~~-~l 467 (507)
...+.++...+...+.+......+.+..+.+.+.++++.+++-+.+..+-... +...+..++.-.+..+.....+ ++
T Consensus 32 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I 111 (161)
T COG0711 32 LKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEI 111 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 010551 468 ENEVQILRQQKSAFEQEM 485 (507)
Q Consensus 468 e~e~~~~~~~~~~~~~~~ 485 (507)
+.+..+...++...-.++
T Consensus 112 ~~e~~~a~~~l~~~~~~l 129 (161)
T COG0711 112 EAEKERALEELRAEVAEL 129 (161)
T ss_pred HHHHHHHHHHHHHHHHHH
No 457
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=75.93 E-value=53 Score=28.57 Aligned_cols=93 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhh-hhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHH------------H
Q 010551 391 IDAIKEDKRVLEL-SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAE------------L 457 (507)
Q Consensus 391 ~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e------------~ 457 (507)
+.++.+..+.+.. ..+..+...+.+-+.+..+-.-+..++.++....++-+..+.+.+.+..+++| .
T Consensus 112 l~km~EslRi~~~~e~~k~~~Re~~iak~m~K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~eiqe~fGy~vDprd~RF 191 (225)
T KOG4848|consen 112 LKKMRESLRILYTKEPEKFTFREAEIAKNMKKYPQTLAKYEASLVKQEQEADAKEVRLERLIREIQEYFGYWVDPRDPRF 191 (225)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHhCccCCCCCHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHH
Q 010551 458 QKMLESSQTIENEVQILRQQKSAFEQ 483 (507)
Q Consensus 458 ~~~~~~~~~le~e~~~~~~~~~~~~~ 483 (507)
++.||+.++-+++...-.+++...+.
T Consensus 192 ~emLqqkEkeekK~~KeaKrk~k~ek 217 (225)
T KOG4848|consen 192 EEMLQQKEKEEKKAVKEAKRKEKQEK 217 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 458
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=75.91 E-value=22 Score=30.30 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhh---hhhhhHHHHHHHHHHHHhHH-HHHHHHHHH
Q 010551 399 RVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERS---RCFKLEAQIAELQKMLESSQ-TIENEVQIL 474 (507)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~---~~~~~e~~~~e~~~~~~~~~-~le~e~~~~ 474 (507)
+.+..+....-.+....+........++..+..+|.....++..++. ..++|+.++.+++.+..+.. +.+.++.+.
T Consensus 2 eqi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 2 EQIDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred hHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 010551 475 R 475 (507)
Q Consensus 475 ~ 475 (507)
.
T Consensus 82 ~ 82 (155)
T PF06810_consen 82 K 82 (155)
T ss_pred H
No 459
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=75.72 E-value=9.9 Score=36.93 Aligned_cols=178 Identities=8% Similarity=0.150 Sum_probs=0.0
Q ss_pred eEEEEEccCCCCcCceEEEEECCCCCCCCCcccCCchhhhhccchhHHHHhhccccccCccccccccccCCCCcccccch
Q 010551 309 HHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVR 388 (507)
Q Consensus 309 ~~l~v~GG~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (507)
+.|+|+-| |....|+|.||-..-....-...-.-...-.|.....+.-+........|+.--.... .....+.
T Consensus 77 Dviii~RG--GGs~eDL~~FN~e~varai~~~~~PvisaIGHe~D~ti~D~vAd~ra~TPtaaAe~~~-----~~~~~~~ 149 (319)
T PF02601_consen 77 DVIIIIRG--GGSIEDLWAFNDEEVARAIAASPIPVISAIGHETDFTIADFVADLRAPTPTAAAELIV-----PDRRELL 149 (319)
T ss_pred cEEEEecC--CCChHHhcccChHHHHHHHHhCCCCEEEecCCCCCchHHHHHHHhhCCCHHHHHHHHh-----hhHHHHH
Q ss_pred hhHHHH-HHHHHHHhhhhHHHHhhhhhhHHHHHHhh-----ccchhHHHhHHHHHhhHHHh-hhhhhhhHHHHHHHHHHH
Q 010551 389 TDIDAI-KEDKRVLELSLTEVRTENSRFREKIDEVN-----STHSELSKELSSVQGQLVAE-RSRCFKLEAQIAELQKML 461 (507)
Q Consensus 389 ~~~~~l-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~e~~~el~~~~~~~~~~-~~~~~~~e~~~~e~~~~~ 461 (507)
..+..+ ..-.+.++..+...+.....+...+.... ..+++.+++|....+.+... +.++...+++++.+..++
T Consensus 150 ~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~~~~~~~l~~~~~~L~~l~~~l 229 (319)
T PF02601_consen 150 QRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLKQAIQQKLQRKRQRLQNLSNRL 229 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HhHH---HHHHHHHHHHHhHHHHHHHHHHhhcccc
Q 010551 462 ESSQ---TIENEVQILRQQKSAFEQEMERATSVQT 493 (507)
Q Consensus 462 ~~~~---~le~e~~~~~~~~~~~~~~~~~~~~~~~ 493 (507)
.... .+++..+....-..++.+.++..+....
T Consensus 230 ~~~~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~l~ 264 (319)
T PF02601_consen 230 KRQSPQQKLNQQRQQLQRLQKRLQRKLSQKRQRLE 264 (319)
T ss_pred hhhhhhhHHHHHHHHhhhhhHHHhhhhHHHHHHHH
No 460
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=75.69 E-value=36 Score=29.43 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 470 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e 470 (507)
+...+..+.+++..+...++....+.+.++..+...++.++.-.++..++..+++.++.++.++...+.--.+.-....+
T Consensus 76 ~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~ 155 (203)
T KOG3433|consen 76 ICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVH 155 (203)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q ss_pred HHH
Q 010551 471 VQI 473 (507)
Q Consensus 471 ~~~ 473 (507)
.+.
T Consensus 156 ~~K 158 (203)
T KOG3433|consen 156 LEK 158 (203)
T ss_pred HHH
No 461
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=75.68 E-value=3.6 Score=46.43 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=0.0
Q ss_pred hhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh--hhhhhhhHHHHHHHHHHHHhHHHHHHHHHH------
Q 010551 402 ELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE--RSRCFKLEAQIAELQKMLESSQTIENEVQI------ 473 (507)
Q Consensus 402 ~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~--~~~~~~~e~~~~e~~~~~~~~~~le~e~~~------ 473 (507)
.+.+++...+.....+++.+.+.+..-.+++.++.+-...++ +.+....|+++++.+++.++.++..++.++
T Consensus 2090 qQ~~qQq~~~~~~~~~ql~~qq~q~~~~~r~q~~~~~r~~Q~rqQq~~~q~qQqqq~q~qq~~q~~q~~q~Qq~~~~~qa 2169 (2220)
T KOG3598|consen 2090 QQIMQQQMREKLAAHHQLVEQQKQRDAREREQREREAREHQERQQQEAYQKQQQQQEQKQQIEQNNQIMQEQQREEAYQA 2169 (2220)
T ss_pred HHHHHHhHHHHhhHHHHHHHhhhcccccccccchhhhhhHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHhhhccccc
Q ss_pred HHHhHHHHHHHHHHhhccccc
Q 010551 474 LRQQKSAFEQEMERATSVQTQ 494 (507)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~q 494 (507)
.+++...+.++-.++.+.|+|
T Consensus 2170 ~qq~qplf~RQglqqtqqQqq 2190 (2220)
T KOG3598|consen 2170 EQQRQPLFRRQGLQQTQQQQQ 2190 (2220)
T ss_pred ccccchhhHHHHHHHHHHHHH
No 462
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=75.52 E-value=29 Score=25.43 Aligned_cols=71 Identities=8% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHH----HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010551 417 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAE----LQKMLESSQTIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 417 ~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e----~~~~~~~~~~le~e~~~~~~~~~~~~~~~~~ 487 (507)
..++.++..++..-..+.-.+-+++.++++-..+.+++++ ...-.++.+++..+....+.++..+.-.+++
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~~ 78 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 463
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=75.30 E-value=65 Score=29.31 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh--hhhhhhhHHHHHHHHHHHHhHHHHH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE--RSRCFKLEAQIAELQKMLESSQTIE 468 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~--~~~~~~~e~~~~e~~~~~~~~~~le 468 (507)
...|..-.++++..+.+.+....+....-...++++.+.....+....+-..- +.++.--+.-+++..........++
T Consensus 26 ~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~ 105 (219)
T TIGR02977 26 EKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALE 105 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHhhcc
Q 010551 469 NEVQILRQQKSAFEQEMERATSV 491 (507)
Q Consensus 469 ~e~~~~~~~~~~~~~~~~~~~~~ 491 (507)
.++.++....+.+...+.+++..
T Consensus 106 ~~~~~~~~~v~~l~~~l~~L~~k 128 (219)
T TIGR02977 106 RELAAVEETLAKLQEDIAKLQAK 128 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 464
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=75.26 E-value=8.7 Score=38.10 Aligned_cols=103 Identities=19% Similarity=0.335 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhH----HHhhhhhhhhHHHHHHHHHH
Q 010551 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL----VAERSRCFKLEAQIAELQKM 460 (507)
Q Consensus 385 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~----~~~~~~~~~~e~~~~e~~~~ 460 (507)
+.+..+.+.+.+........+.+......+|+.+++.......+..-++....... +.+..++.++|+.+.+++..
T Consensus 80 E~~~K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~ 159 (370)
T PF02994_consen 80 ENIIKNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDR 159 (370)
T ss_dssp --------------------------------------H-------------------------HHHHHHHHHHHHHHHH
T ss_pred HhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010551 461 LESSQTIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 461 ~~~~~~le~e~~~~~~~~~~~~~~~~~ 487 (507)
+..+.+..+..+.-.+.+....+++++
T Consensus 160 ~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 160 IEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHh
No 465
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=75.11 E-value=34 Score=29.24 Aligned_cols=104 Identities=15% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHH-hHHHHHH
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE-SSQTIEN 469 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~-~~~~le~ 469 (507)
.+.+..+...-+..+...+.+..+|..+.+.........++++.+++.....+++.+...=.++++..++|+ ....+..
T Consensus 38 Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 38 LESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q ss_pred HHHHHHHhHHHHHHHHHHhhccccc
Q 010551 470 EVQILRQQKSAFEQEMERATSVQTQ 494 (507)
Q Consensus 470 e~~~~~~~~~~~~~~~~~~~~~~~q 494 (507)
....+..+...+..+......++.+
T Consensus 118 q~~rlee~e~~l~~e~~~l~er~~e 142 (158)
T PF09744_consen 118 QSSRLEEREAELKKEYNRLHERERE 142 (158)
T ss_pred hccccchhHHHHHHHHHHHHHHHHH
No 466
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=75.08 E-value=11 Score=29.79 Aligned_cols=54 Identities=17% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHH
Q 010551 406 TEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK 459 (507)
Q Consensus 406 ~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~ 459 (507)
.+......++.+++..+..+++++.+++..+-+++..++-+-+.|+..+.+.++
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 467
>PRK04325 hypothetical protein; Provisional
Probab=75.07 E-value=13 Score=27.21 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551 413 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 413 ~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
..+...|.+++..+.-.+.-+++.-..+-++++.+.+++.+++.+.++++..+
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 468
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=75.00 E-value=30 Score=36.56 Aligned_cols=101 Identities=13% Similarity=0.230 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH-
Q 010551 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ- 465 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~- 465 (507)
+...+..+...-..+...+.....-...+...+++....+++.+++...+...++.+++.+.+.+..+..++.++....
T Consensus 349 l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR 428 (560)
T PF06160_consen 349 LEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKR 428 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------------HHHHHHHHHHHhHHHHHHHHHH
Q 010551 466 ------------TIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 466 ------------~le~e~~~~~~~~~~~~~~~~~ 487 (507)
+..........+++.+.++|++
T Consensus 429 ~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~ 462 (560)
T PF06160_consen 429 RLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQ 462 (560)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhc
No 469
>PRK11281 hypothetical protein; Provisional
Probab=74.99 E-value=30 Score=39.57 Aligned_cols=98 Identities=16% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHh------HHHHHhhHHHhhhhhhhhHHHHHHHHHHHH
Q 010551 389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE------LSSVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~e------l~~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
.+.+..+++.+++++.+....++..+.++++++.++..+....+ +.+.++.+.+.+..+++.+..+++...++-
T Consensus 73 ~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi 152 (1113)
T PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLV 152 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHH----HHHHHHHHHHHhHHHHHHHHH
Q 010551 463 SSQ----TIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 463 ~~~----~le~e~~~~~~~~~~~~~~~~ 486 (507)
..+ ..+.++.+.++++++.++++.
T Consensus 153 ~~qT~PERAQ~~lsea~~RlqeI~~~L~ 180 (1113)
T PRK11281 153 SLQTQPERAQAALYANSQRLQQIRNLLK 180 (1113)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHh
No 470
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=74.93 E-value=60 Score=28.70 Aligned_cols=89 Identities=13% Similarity=0.228 Sum_probs=0.0
Q ss_pred hhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH----------------
Q 010551 402 ELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ---------------- 465 (507)
Q Consensus 402 ~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~---------------- 465 (507)
+..|.-...-.++|++++.+.+..+++....|+.-+.....-.....+.+.++.-++.-++..+
T Consensus 59 eAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~e 138 (188)
T PF05335_consen 59 EAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQE 138 (188)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --HHHHHHHHHHHhHHHHHHHHHHhhc
Q 010551 466 --TIENEVQILRQQKSAFEQEMERATS 490 (507)
Q Consensus 466 --~le~e~~~~~~~~~~~~~~~~~~~~ 490 (507)
+..+.++..+++.+.|.++|.+.+.
T Consensus 139 l~eK~qLLeaAk~Rve~L~~QL~~Ar~ 165 (188)
T PF05335_consen 139 LAEKTQLLEAAKRRVEELQRQLQAARA 165 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=74.84 E-value=52 Score=28.15 Aligned_cols=104 Identities=16% Similarity=0.237 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH-HHH
Q 010551 390 DIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIE 468 (507)
Q Consensus 390 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-~le 468 (507)
+.+.|+..+..+.................+.+.+..+....++|...-.+++...+.+...=....+....+...+ ++.
T Consensus 51 e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~ 130 (158)
T PF09744_consen 51 ELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELK 130 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHhhcccc
Q 010551 469 NEVQILRQQKSAFEQEMERATSVQT 493 (507)
Q Consensus 469 ~e~~~~~~~~~~~~~~~~~~~~~~~ 493 (507)
++...++++-..+-+.+.+.-.+++
T Consensus 131 ~e~~~l~er~~e~l~~~~e~ver~k 155 (158)
T PF09744_consen 131 KEYNRLHERERELLRKLKEHVERQK 155 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=74.83 E-value=49 Score=34.96 Aligned_cols=109 Identities=14% Similarity=0.236 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHhhhhHHHHhhhhh--hHHHHHHhhccchhHHHh-HHHHHhhHHHhhhhhhhhHHHHHHHHHHH
Q 010551 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSR--FREKIDEVNSTHSELSKE-LSSVQGQLVAERSRCFKLEAQIAELQKML 461 (507)
Q Consensus 385 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--l~~~l~~~~~~~~e~~~e-l~~~~~~~~~~~~~~~~~e~~~~e~~~~~ 461 (507)
..+....+++..+..-.+.......++..+ |++..+..++++..++++ |.+.++-+-..+..+.+||...-+.+-+|
T Consensus 908 dalkqr~eq~~~~~ql~ekdFv~kqqq~le~~lkrm~~~~k~ema~iErecLm~Kq~LlRarEaaiWElEe~qlqEkhqL 987 (1187)
T KOG0579|consen 908 DALKQRKEQIEIEHQLKEKDFVMKQQQNLEAMLKRMAEKHKEEMASIERECLMQKQNLLRAREAAIWELEEKQLQEKHQL 987 (1187)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q ss_pred HhHH--------------HHHHHHHHHHHhHHHHHHHHHHhhcccc
Q 010551 462 ESSQ--------------TIENEVQILRQQKSAFEQEMERATSVQT 493 (507)
Q Consensus 462 ~~~~--------------~le~e~~~~~~~~~~~~~~~~~~~~~~~ 493 (507)
-+.+ .-++|.+|.++=-+.+.++|...+++.+
T Consensus 988 ~kqqlKDqYflqRhqlL~rHekE~eQmqrynQr~ie~Lk~rqtqer 1033 (1187)
T KOG0579|consen 988 HKQQLKDQYFLQRHQLLARHEKEMEQMQRYNQREIEDLKRRQTQER 1033 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=74.76 E-value=41 Score=31.01 Aligned_cols=100 Identities=12% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhh----hhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 010551 398 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER----SRCFKLEAQIAELQKMLESSQTIENEVQI 473 (507)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~----~~~~~~e~~~~e~~~~~~~~~~le~e~~~ 473 (507)
.++-...+.++.++..+-.++-++.++.-+...+++++....-..++ .+-...+..-.|.+++-++.++|+.+.+.
T Consensus 329 erqekqeleqmaeeekkr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieareerrkqkeeeklk~e~qk 408 (445)
T KOG2891|consen 329 ERQEKQELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEAREERRKQKEEEKLKAEEQK 408 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHhhcccccCCC
Q 010551 474 LRQQKSAFEQEMERATSVQTQGSG 497 (507)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~q~~~ 497 (507)
+.+-.++...+...+.+.+.+-+.
T Consensus 409 ikeleek~~eeedal~~all~~qe 432 (445)
T KOG2891|consen 409 IKELEEKIKEEEDALLLALLNLQE 432 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH
No 474
>PRK00295 hypothetical protein; Provisional
Probab=74.73 E-value=15 Score=26.34 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=0.0
Q ss_pred hHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551 415 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 415 l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
+...|.+++..+.-.+.-+++.-..+-++++.+..++.+++.+.++++..+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 475
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=74.70 E-value=33 Score=29.58 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHHHhhcc
Q 010551 420 DEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKSAFEQEMERATSV 491 (507)
Q Consensus 420 ~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-~le~e~~~~~~~~~~~~~~~~~~~~~ 491 (507)
.+.+..++.--.+|...+..+.+....++.-++.++..++++.... +.++-+.+.-++++....+.+..++.
T Consensus 30 ~e~e~~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq 102 (228)
T PRK06800 30 VEVEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQE 102 (228)
T ss_pred HhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=74.65 E-value=52 Score=34.48 Aligned_cols=100 Identities=19% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH-----
Q 010551 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----- 465 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----- 465 (507)
+..+..+....+..+.....+...|+..++.++.+++....++...++....-...+..|+.++...+.++.-..
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~ 362 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEK 362 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcc
Q ss_pred ------HHHHHHHHHHHhHHHHHHHHHHhhc
Q 010551 466 ------TIENEVQILRQQKSAFEQEMERATS 490 (507)
Q Consensus 466 ------~le~e~~~~~~~~~~~~~~~~~~~~ 490 (507)
.+...++++..+.+....+.+..+.
T Consensus 363 ~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~ 393 (522)
T PF05701_consen 363 AKEAMSELPKALQQLSSEAEEAKKEAEEAKE 393 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=74.64 E-value=22 Score=35.62 Aligned_cols=164 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred eEEEEEccCCCCcCceEEEEECCCCCCCCCcccCCchhhhhccchhHHHHhhccccccCccc--cccccccCCCCccccc
Q 010551 309 HHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKT--LSSKFAGIGNDLSEKD 386 (507)
Q Consensus 309 ~~l~v~GG~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 386 (507)
+.|||.-| |....|.|.|+- ...........+.-+..+|.+....+... .+=..++..-.+..-.
T Consensus 195 DvlIVaRG--GGSiEDLW~FNd-----------E~vaRAi~~s~iPvISAVGHEtD~tL~DfVAD~RApTPTaAAE~~vP 261 (440)
T COG1570 195 DVLIVARG--GGSIEDLWAFND-----------EIVARAIAASRIPVISAVGHETDFTLADFVADLRAPTPTAAAELVVP 261 (440)
T ss_pred CEEEEecC--cchHHHHhccCh-----------HHHHHHHHhCCCCeEeecccCCCccHHHhhhhccCCCchHHHHHhCC
Q ss_pred chhh-HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccch--hHHHhHHHHHhhHHHhhhhhh-hhHHHHHHHHHHHH
Q 010551 387 VRTD-IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHS--ELSKELSSVQGQLVAERSRCF-KLEAQIAELQKMLE 462 (507)
Q Consensus 387 ~~~~-~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--e~~~el~~~~~~~~~~~~~~~-~~e~~~~e~~~~~~ 462 (507)
...+ .+.++...+.+...... ....-++.++.+.+.+. .-.+.+...++++.....++. .++..++..+++++
T Consensus 262 ~~~el~~~l~~~~~rL~~~~~~---~l~~~~~~l~~l~~~l~~~~p~~~l~~~~q~ld~~~~rL~~~l~~~~~~~~~~~~ 338 (440)
T COG1570 262 DSAELLQQLDQLQRRLHRALRR---LLDQKKQRLEHLARRLQFRSPERLLSEQQQRLDELAIRLRRALENQLALKKQRLE 338 (440)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHH-HHHHHHHHHHHhHHHHHHHHHHh
Q 010551 463 SSQ-TIENEVQILRQQKSAFEQEMERA 488 (507)
Q Consensus 463 ~~~-~le~e~~~~~~~~~~~~~~~~~~ 488 (507)
... .+...++++++.+.+++..+..+
T Consensus 339 ~l~~rl~~~~~~~~~~~~~l~~~l~~~ 365 (440)
T COG1570 339 RLTQRLNPQIQRQQQRLQQLERRLDKA 365 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 478
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=74.54 E-value=17 Score=31.65 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHH
Q 010551 393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 461 (507)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~ 461 (507)
.+.++...+++.+.....+.++|++.++..-...-.. +|-+.+.|++...++++.||+.+.++++..
T Consensus 82 t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsY--qll~hr~e~ee~~~~l~~le~~~~~~e~~~ 148 (175)
T PRK13182 82 ISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSY--QLLQHRREMEEMLERLQKLEARLKKLEPIY 148 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHhHHHHHHHHHHHHHHHHHHHHHHhhc
No 479
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=74.54 E-value=34 Score=40.60 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred cccccchhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHH-----HHH
Q 010551 382 LSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQ-----IAE 456 (507)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~-----~~e 456 (507)
.+...++.+.....++.+++...+.....+...|+..+.++..+++....++...+.+...=+.|.+++..+ ..+
T Consensus 1229 EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~ 1308 (1822)
T KOG4674|consen 1229 ESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKND 1308 (1822)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 010551 457 LQKMLESSQTIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 457 ~~~~~~~~~~le~e~~~~~~~~~~~~~~~~~~~ 489 (507)
.++-...+..|+.+++..+...+.+...+.+.+
T Consensus 1309 ~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1309 YEKLKSEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=74.48 E-value=43 Score=26.90 Aligned_cols=85 Identities=12% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHH-----hhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH---H
Q 010551 395 KEDKRVLELSLTEVR-----TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ---T 466 (507)
Q Consensus 395 ~~~~~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~---~ 466 (507)
......++..+...+ ....-|+.-|.+++.-=.+ ..-....+.++.+.+++|.|.+.+|++.+ +
T Consensus 23 ~~K~~~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd--------~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~ 94 (115)
T PF06476_consen 23 EAKEQAIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTD--------EGLKAERQQKIAEKQQKVAEREAELKEAQAKGD 94 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCC--------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q ss_pred HHHHHHHHHHhHHHHHHHHHHh
Q 010551 467 IENEVQILRQQKSAFEQEMERA 488 (507)
Q Consensus 467 le~e~~~~~~~~~~~~~~~~~~ 488 (507)
. +++...++.+.....+|+++
T Consensus 95 ~-~KI~K~~~KL~ea~~eL~~A 115 (115)
T PF06476_consen 95 S-DKIAKRQKKLAEAKAELKEA 115 (115)
T ss_pred H-HHHHHHHHHHHHHHHHHhhC
No 481
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=74.32 E-value=42 Score=29.51 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=0.0
Q ss_pred ccccchhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHH
Q 010551 383 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
..+.+.+++-..-..++.......-..-+..+|----+.-.+.+-++-.+.+.+++..+.++..+++-...+|++++.|+
T Consensus 19 DlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK 98 (272)
T KOG4552|consen 19 DLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLK 98 (272)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred hHH-HHHHHHHHHHHhHHHHHH
Q 010551 463 SSQ-TIENEVQILRQQKSAFEQ 483 (507)
Q Consensus 463 ~~~-~le~e~~~~~~~~~~~~~ 483 (507)
..+ -|-...-|..|++.+.++
T Consensus 99 ~aE~iLtta~fqA~qKLksi~~ 120 (272)
T KOG4552|consen 99 SAEVILTTACFQANQKLKSIKE 120 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 482
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=74.31 E-value=38 Score=34.92 Aligned_cols=121 Identities=17% Similarity=0.111 Sum_probs=0.0
Q ss_pred CccceeEEEE--CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCcc
Q 010551 90 PMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLL 167 (507)
Q Consensus 90 ~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~ 167 (507)
|+.+..++.. .-.||+.|- -+++|.||+..++|-..- ..-.+-.++..+.--+.|+.+||-++.
T Consensus 133 P~~GRDm~y~~~scDly~~gs-------g~evYRlNLEqGrfL~P~---~~~~~~lN~v~in~~hgLla~Gt~~g~---- 198 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGS-------GSEVYRLNLEQGRFLNPF---ETDSGELNVVSINEEHGLLACGTEDGV---- 198 (703)
T ss_pred CcCCccccccCCCccEEEeec-------CcceEEEEcccccccccc---ccccccceeeeecCccceEEecccCce----
Q ss_pred CcEEEEECCCCc-EEEeccCCCCCCCCCC-----ceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010551 168 NDVHFLDLETMT-WDAVEVTQTPPAPRYD-----HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 230 (507)
Q Consensus 168 n~~~~~d~~t~~-W~~~~~~~~~p~~r~~-----~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~ 230 (507)
+..+|+.+.. -..+......+.-... .+++.+.++-|-|.-|...+ .+++||+.+.+
T Consensus 199 --VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G----~v~iyDLRa~~ 261 (703)
T KOG2321|consen 199 --VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG----SVLIYDLRASK 261 (703)
T ss_pred --EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC----cEEEEEcccCC
No 483
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=74.24 E-value=97 Score=30.81 Aligned_cols=278 Identities=15% Similarity=0.077 Sum_probs=0.0
Q ss_pred CCCCeEeeCCCCceEEeecCCCCCCccccceEEEE---CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCc
Q 010551 2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF---DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADK 78 (507)
Q Consensus 2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~ 78 (507)
+..+++.|..+.+=...- +..... |..... +..+|+.+. ...+-++|+.+++=...-..+
T Consensus 15 ~~~v~viD~~t~~~~~~i---~~~~~~--h~~~~~s~Dgr~~yv~~r------dg~vsviD~~~~~~v~~i~~G------ 77 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARI---PTGGAP--HAGLKFSPDGRYLYVANR------DGTVSVIDLATGKVVATIKVG------ 77 (369)
T ss_dssp GTEEEEEETTT-SEEEEE---E-STTE--EEEEE-TT-SSEEEEEET------TSEEEEEETTSSSEEEEEE-S------
T ss_pred CCEEEEEECCCCeEEEEE---cCCCCc--eeEEEecCCCCEEEEEcC------CCeEEEEECCcccEEEEEecC------
Q ss_pred cccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCC----CCcCcEEEEECCEE
Q 010551 79 TEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV----TRGGHSVTLVGSRL 154 (507)
Q Consensus 79 ~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~----~r~~~~~~~~~~~i 154 (507)
......++.-+++..+.+.+. .+.+.++|..|.+=-+.-+++.++. +|.....+...+..
T Consensus 78 -----------~~~~~i~~s~DG~~~~v~n~~-----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~ 141 (369)
T PF02239_consen 78 -----------GNPRGIAVSPDGKYVYVANYE-----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE 141 (369)
T ss_dssp -----------SEEEEEEE--TTTEEEEEEEE-----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred -----------CCcceEEEcCCCCEEEEEecC-----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCE
Q ss_pred EEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEec
Q 010551 155 IIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP 234 (507)
Q Consensus 155 y~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~ 234 (507)
|++--.+ .+.++..|....+=..... ....+.-|-+..-.+++.|+.+-...+ .+-.+|..+++-...
T Consensus 142 fVv~lkd-----~~~I~vVdy~d~~~~~~~~---i~~g~~~~D~~~dpdgry~~va~~~sn----~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 142 FVVNLKD-----TGEIWVVDYSDPKNLKVTT---IKVGRFPHDGGFDPDGRYFLVAANGSN----KIAVIDTKTGKLVAL 209 (369)
T ss_dssp EEEEETT-----TTEEEEEETTTSSCEEEEE---EE--TTEEEEEE-TTSSEEEEEEGGGT----EEEEEETTTTEEEEE
T ss_pred EEEEEcc-----CCeEEEEEeccccccceee---ecccccccccccCcccceeeecccccc----eeEEEeeccceEEEE
Q ss_pred ccCCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECCC----CcEEEeccCCCCCCCCCCCCceEEEEEcCce
Q 010551 235 EIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTK----LAWSILTSVKGRNPLASEGLSVCSAIIEGEH 309 (507)
Q Consensus 235 ~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~----~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (507)
-..+..|.+.....+.-. .+.++..+|. ........--++.+ ..|+.+..++.. +..+.....++..
T Consensus 210 i~~g~~p~~~~~~~~php~~g~vw~~~~~--~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~------G~glFi~thP~s~ 281 (369)
T PF02239_consen 210 IDTGKKPHPGPGANFPHPGFGPVWATSGL--GYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ------GGGLFIKTHPDSR 281 (369)
T ss_dssp EE-SSSBEETTEEEEEETTTEEEEEEEBS--SSSEEEEEE--TTT-STTTBTSEEEEEE-S------SSS--EE--TT-S
T ss_pred eeccccccccccccccCCCcceEEeeccc--cceecccccCCccccchhhcCeEEEEEECC------CCcceeecCCCCc
Q ss_pred EEEEEccCCCCcCceEEEEECCCC
Q 010551 310 HLVAFGGYNGKYNNEVFVMRLKPR 333 (507)
Q Consensus 310 ~l~v~GG~~~~~~~~~~~~~~~~~ 333 (507)
++++---.+.. ...+.++|..+.
T Consensus 282 ~vwvd~~~~~~-~~~v~viD~~tl 304 (369)
T PF02239_consen 282 YVWVDTFLNPD-ADTVQVIDKKTL 304 (369)
T ss_dssp EEEEE-TT-SS-HT-EEEEECCGT
T ss_pred cEEeeccCCCC-CceEEEEECcCc
No 484
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.21 E-value=34 Score=34.90 Aligned_cols=113 Identities=19% Similarity=0.306 Sum_probs=0.0
Q ss_pred cccccchhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHH
Q 010551 382 LSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 461 (507)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~ 461 (507)
+..+.+.++.+-|++....++..+.+.......++.....+......+..+|....--+++.+++|-+++.++....+.+
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ 410 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIE 410 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HhHH----------HHHHHHHHHHHhHHHHHHHHHHhhccccc
Q 010551 462 ESSQ----------TIENEVQILRQQKSAFEQEMERATSVQTQ 494 (507)
Q Consensus 462 ~~~~----------~le~e~~~~~~~~~~~~~~~~~~~~~~~q 494 (507)
.... .++++...+.........+.++.-+...|
T Consensus 411 ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilke 453 (654)
T KOG4809|consen 411 DDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKE 453 (654)
T ss_pred HhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=74.19 E-value=71 Score=33.94 Aligned_cols=106 Identities=14% Similarity=0.279 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhh-hhHHHHHHHHHHHHhHH-H
Q 010551 389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCF-KLEAQIAELQKMLESSQ-T 466 (507)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~-~~e~~~~e~~~~~~~~~-~ 466 (507)
.+...+.+....++..+....+....+..++......+++...+-...+.++...++... .++..+.|.+-++.+.= +
T Consensus 514 aE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~ 593 (739)
T PF07111_consen 514 AERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSE 593 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHH---HHHHHHHHhhccccc
Q 010551 467 IENEVQILRQQKS---AFEQEMERATSVQTQ 494 (507)
Q Consensus 467 le~e~~~~~~~~~---~~~~~~~~~~~~~~q 494 (507)
.|+.+.+..++-. -..++.++.-.+.+.
T Consensus 594 ~E~rLNeARREHtKaVVsLRQ~qrqa~reKe 624 (739)
T PF07111_consen 594 MEKRLNEARREHTKAVVSLRQIQRQAAREKE 624 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 486
>PRK04325 hypothetical protein; Provisional
Probab=74.16 E-value=22 Score=26.00 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhh
Q 010551 441 VAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 441 ~~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~~~~~~ 489 (507)
....+|+.+||.+++-.+.-+.++. +.++++..+++++..+.+.+++.+
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 487
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=74.10 E-value=28 Score=29.63 Aligned_cols=60 Identities=15% Similarity=0.361 Sum_probs=0.0
Q ss_pred HhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH------HHHHHHHHHHHhHHHHHHHHHHhhc
Q 010551 431 KELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ------TIENEVQILRQQKSAFEQEMERATS 490 (507)
Q Consensus 431 ~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~------~le~e~~~~~~~~~~~~~~~~~~~~ 490 (507)
.+++.+..+++.++++.+.+++.....+.+++.++ +++++++.|.++..--++-++....
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=74.05 E-value=19 Score=28.70 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=0.0
Q ss_pred hHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH
Q 010551 405 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 464 (507)
Q Consensus 405 ~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~ 464 (507)
+...+.+.+.+.+.+...+..++++...+++.+.-.++.+++.++++++..+..++++..
T Consensus 27 i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~ 86 (110)
T PF10828_consen 27 IDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTA 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=74.01 E-value=59 Score=28.24 Aligned_cols=108 Identities=26% Similarity=0.422 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHH----HHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELS----SVQGQLVAERSRCFKLEAQIAELQKM 460 (507)
Q Consensus 385 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~----~~~~~~~~~~~~~~~~e~~~~e~~~~ 460 (507)
+.+...|..|..+|..-+..+.....+....+.-++....+.+....++. .+..++..-+.||.-||.++.-.++.
T Consensus 7 K~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkm 86 (178)
T PF14073_consen 7 KNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKM 86 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHH-----------HHHHH-------HHHHHHhHHHHHHHHHHhhccc
Q 010551 461 LESSQ-----------TIENE-------VQILRQQKSAFEQEMERATSVQ 492 (507)
Q Consensus 461 ~~~~~-----------~le~e-------~~~~~~~~~~~~~~~~~~~~~~ 492 (507)
+...+ .++++ ++--...++.+|++--.+...|
T Consensus 87 v~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q 136 (178)
T PF14073_consen 87 VESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQ 136 (178)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=73.99 E-value=18 Score=28.62 Aligned_cols=63 Identities=21% Similarity=0.357 Sum_probs=0.0
Q ss_pred HhhhhhhHHHHHHhhccchhHHHhHHHH--HhhHHHhhhhhhhhHHHHHHHHHHHHhHH-----HHHHHH
Q 010551 409 RTENSRFREKIDEVNSTHSELSKELSSV--QGQLVAERSRCFKLEAQIAELQKMLESSQ-----TIENEV 471 (507)
Q Consensus 409 ~~~~~~l~~~l~~~~~~~~e~~~el~~~--~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-----~le~e~ 471 (507)
+.+...+.+.++.....++..|.+++.. ++++..++-++.+++-.+.++..+++.+. -+|+++
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~~l 103 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLENEL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
No 491
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=73.94 E-value=34 Score=34.04 Aligned_cols=89 Identities=17% Similarity=0.252 Sum_probs=0.0
Q ss_pred hHHHHhhhhhhHHHHHHhhccchhHHH----hHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH-HHHHHHHHHHHhHH
Q 010551 405 LTEVRTENSRFREKIDEVNSTHSELSK----ELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKS 479 (507)
Q Consensus 405 ~~~~~~~~~~l~~~l~~~~~~~~e~~~----el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-~le~e~~~~~~~~~ 479 (507)
+.....+..++++....++..++.++. +++...+.+++++-|.+.||.++-++.+-.|.+- .|.+++.-..++.+
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred -HHHHHHHHhhcccc
Q 010551 480 -AFEQEMERATSVQT 493 (507)
Q Consensus 480 -~~~~~~~~~~~~~~ 493 (507)
+..+...+..+..+
T Consensus 294 Yqs~eRaRdi~E~~E 308 (395)
T PF10267_consen 294 YQSYERARDIWEVME 308 (395)
T ss_pred HHHHHHHhHHHHHHH
No 492
>PRK00736 hypothetical protein; Provisional
Probab=73.93 E-value=14 Score=26.45 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=0.0
Q ss_pred hHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551 415 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 415 l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
+...|.+++..+.-.+.-+++.-..+-++++.+..|+.+++.+.++++..+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 493
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=73.92 E-value=51 Score=30.64 Aligned_cols=97 Identities=15% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh---hhhhhhhHH-HHHHHHHHHHhHH-HHHHHHH
Q 010551 398 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE---RSRCFKLEA-QIAELQKMLESSQ-TIENEVQ 472 (507)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~---~~~~~~~e~-~~~e~~~~~~~~~-~le~e~~ 472 (507)
...++....+.+.=..++...+..++.+++++...+...+.++.-+ ++.+.-++. +|.++.++++++. ..+.|+.
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEld 141 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELD 141 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHhhccccc
Q 010551 473 ILRQQKSAFEQEMERATSVQTQ 494 (507)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~q 494 (507)
.+.+-.+.....+....+..++
T Consensus 142 el~e~~~~el~~l~~~~q~k~~ 163 (258)
T PF15397_consen 142 ELNEMRQMELASLSRKIQEKKE 163 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 494
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=73.87 E-value=25 Score=30.68 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHH--HHHHHHHHhHHHHHHHHHHhhcccccC
Q 010551 429 LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE--NEVQILRQQKSAFEQEMERATSVQTQG 495 (507)
Q Consensus 429 ~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le--~e~~~~~~~~~~~~~~~~~~~~~~~q~ 495 (507)
....++.++.+.+...+++.+|++.++.+..+.-..|-|+ +|+++..++++++++.+.+........
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~ 151 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPIYITP 151 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCC
No 495
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=73.82 E-value=1.1e+02 Score=31.36 Aligned_cols=187 Identities=16% Similarity=0.085 Sum_probs=0.0
Q ss_pred CCCCCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccc
Q 010551 1 MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTE 80 (507)
Q Consensus 1 ~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~ 80 (507)
+|...+++|...+.=......| .+......+....+ .+++.|+.+ ..+.++|+.+++-...-.....
T Consensus 223 ~D~tiriwd~~~~~~~~~~l~g-H~~~v~~~~f~p~g-~~i~Sgs~D-----~tvriWd~~~~~~~~~l~~hs~------ 289 (456)
T KOG0266|consen 223 DDKTLRIWDLKDDGRNLKTLKG-HSTYVTSVAFSPDG-NLLVSGSDD-----GTVRIWDVRTGECVRKLKGHSD------ 289 (456)
T ss_pred CCceEEEeeccCCCeEEEEecC-CCCceEEEEecCCC-CEEEEecCC-----CcEEEEeccCCeEEEeeeccCC------
Q ss_pred cCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEEECCEEEEEc
Q 010551 81 DSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTLVGSRLIIFG 158 (507)
Q Consensus 81 ~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~iy~~G 158 (507)
.....+..-++.+++.+..+.. +.+||+.++. -........-+. ...+....-++..++.+
T Consensus 290 ----------~is~~~f~~d~~~l~s~s~d~~------i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 290 ----------GISGLAFSPDGNLLVSASYDGT------IRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSA 352 (456)
T ss_pred ----------ceEEEEECCCCCEEEEcCCCcc------EEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEe
Q ss_pred CCCCCCCccCcEEEEECCCCcEEEeccCCCCCCC-CCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010551 159 GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP-RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 230 (507)
Q Consensus 159 G~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~ 230 (507)
..+.. +-.+|+....--.... ..... ++.+..+...++.+++.|+.+ ..++.+|+.+..
T Consensus 353 ~~d~~------~~~w~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d-----~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 353 SLDRT------LKLWDLRSGKSVGTYT--GHSNLVRCIFSPTLSTGGKLIYSGSED-----GSVYVWDSSSGG 412 (456)
T ss_pred cCCCe------EEEEEccCCcceeeec--ccCCcceeEecccccCCCCeEEEEeCC-----ceEEEEeCCccc
No 496
>PRK04406 hypothetical protein; Provisional
Probab=73.81 E-value=15 Score=26.94 Aligned_cols=54 Identities=9% Similarity=0.183 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551 412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 412 ~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
...+...|.+++..+.-.+.-+++....+-.++..+..++.+++.+.++++..+
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 497
>PRK00846 hypothetical protein; Provisional
Probab=73.58 E-value=16 Score=26.84 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551 413 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 413 ~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
..+...|.+++..+.-.+.-+++....+-.++..+.+++++++.+..+++..+
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 498
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=73.55 E-value=10 Score=35.72 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred hhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH
Q 010551 403 LSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFE 482 (507)
Q Consensus 403 ~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~~~~ 482 (507)
..+...-.+...+- .+......-++...+....+.++..+++.+..++..+.+-+ ...++-++|+++.+.+.++++++
T Consensus 105 ~~~~~~l~~l~~~g-~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eIe~~~ 182 (262)
T PF14257_consen 105 DKFDSFLDELSELG-KVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLEIERELSRVRSEIEQLE 182 (262)
T ss_pred HHHHHHHHHHhccC-ceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhcc
Q 010551 483 QEMERATSV 491 (507)
Q Consensus 483 ~~~~~~~~~ 491 (507)
.++.....+
T Consensus 183 ~~~~~l~~~ 191 (262)
T PF14257_consen 183 GQLKYLDDR 191 (262)
T ss_pred HHHHHHHHh
No 499
>PRK10115 protease 2; Provisional
Probab=73.53 E-value=1.4e+02 Score=32.48 Aligned_cols=246 Identities=11% Similarity=-0.037 Sum_probs=0.0
Q ss_pred CCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCCC-ccCCceEEEEccCC--ceeeeccccccCCCccc
Q 010551 4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNG-RFLSDVQVFDLRSL--AWSNLRLETELDADKTE 80 (507)
Q Consensus 4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~-~~~~~~~~~d~~~~--~W~~~~~~~~~~~~~~~ 80 (507)
.+++.|+.++ ..++ ..........+-.-++.-+++...... ....+++.+++.++ .=..+-.....
T Consensus 154 ~l~v~d~~tg--~~l~---~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~------ 222 (686)
T PRK10115 154 GIRFRNLETG--NWYP---ELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDD------ 222 (686)
T ss_pred EEEEEECCCC--CCCC---ccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCC------
Q ss_pred cCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEE--CCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEc
Q 010551 81 DSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFID--LETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFG 158 (507)
Q Consensus 81 ~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd--~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~G 158 (507)
....+.....+.-|++ ........+.++.|+ ..++.|..+ ........+.....++.+|+.-
T Consensus 223 ----------~~~~~~~~s~d~~~l~--i~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ly~~t 286 (686)
T PRK10115 223 ----------TFYVSLHKTTSKHYVV--IHLASATTSEVLLLDAELADAEPFVF----LPRRKDHEYSLDHYQHRFYLRS 286 (686)
T ss_pred ----------CEEEEEEEcCCCCEEE--EEEECCccccEEEEECcCCCCCceEE----EECCCCCEEEEEeCCCEEEEEE
Q ss_pred CCCCCCCccCcEEEEECC-CCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccC
Q 010551 159 GEDRSRKLLNDVHFLDLE-TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK 237 (507)
Q Consensus 159 G~~~~~~~~n~~~~~d~~-t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~ 237 (507)
-.+.... .+...++. ...|+.+ -.+.....-..+.+..++|++..-.++. ..++++|+.+.....+...
T Consensus 287 n~~~~~~---~l~~~~~~~~~~~~~l----~~~~~~~~i~~~~~~~~~l~~~~~~~g~---~~l~~~~~~~~~~~~l~~~ 356 (686)
T PRK10115 287 NRHGKNF---GLYRTRVRDEQQWEEL----IPPRENIMLEGFTLFTDWLVVEERQRGL---TSLRQINRKTREVIGIAFD 356 (686)
T ss_pred cCCCCCc---eEEEecCCCcccCeEE----ECCCCCCEEEEEEEECCEEEEEEEeCCE---EEEEEEcCCCCceEEecCC
Q ss_pred CCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCC
Q 010551 238 GDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK 288 (507)
Q Consensus 238 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~ 288 (507)
.+.-......+...-++.+++. ..+...-.++|.||+.+..|+.+....
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~--~ss~~~P~~~y~~d~~~~~~~~l~~~~ 405 (686)
T PRK10115 357 DPAYVTWIAYNPEPETSRLRYG--YSSMTTPDTLFELDMDTGERRVLKQTE 405 (686)
T ss_pred CCceEeeecccCCCCCceEEEE--EecCCCCCEEEEEECCCCcEEEEEecC
No 500
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=73.48 E-value=35 Score=36.46 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHH
Q 010551 389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE 468 (507)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le 468 (507)
+.++.|+...+++.......+.+..++...+++.+.++-+. .++...|....+-++++.-..++.++=+|...++--
T Consensus 448 k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~---kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN 524 (861)
T PF15254_consen 448 KSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLEN---KQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKEN 524 (861)
T ss_pred HhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Q ss_pred HHHHHHHHhHHHHHHHHHHhhcccccC
Q 010551 469 NEVQILRQQKSAFEQEMERATSVQTQG 495 (507)
Q Consensus 469 ~e~~~~~~~~~~~~~~~~~~~~~~~q~ 495 (507)
+-+-.-.+|.+..-..|.|+...+..+
T Consensus 525 ~iL~itlrQrDaEi~RL~eLtR~LQ~S 551 (861)
T PF15254_consen 525 QILGITLRQRDAEIERLRELTRTLQNS 551 (861)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHH
Done!