Your job contains 1 sequence.
>010553
MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL
AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT
IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL
SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS
ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG
SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY
HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA
ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS
LMGARVDTRKELIQNAANLVNLDHLDI
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010553
(507 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2146698 - symbol:GYRB2 "DNA GYRASE B2" species... 2156 2.5e-223 1
UNIPROTKB|Q5NBJ3 - symbol:GYRB "DNA gyrase subunit B, chl... 2050 4.3e-212 1
UNIPROTKB|Q7NHM9 - symbol:gyrB "DNA gyrase subunit B" spe... 1403 1.6e-143 1
UNIPROTKB|A8IIG8 - symbol:TOP3 "DNA gyrase subunit B-like... 1278 2.8e-130 1
TIGR_CMR|CHY_2705 - symbol:CHY_2705 "DNA gyrase, B subuni... 1219 4.9e-124 1
TIGR_CMR|BA_0005 - symbol:BA_0005 "DNA gyrase, B subunit"... 1182 4.1e-120 1
UNIPROTKB|P05652 - symbol:gyrB "DNA gyrase subunit B" spe... 1180 6.7e-120 1
UNIPROTKB|Q8TQG0 - symbol:gyrB "DNA gyrase subunit B" spe... 1152 6.2e-117 1
UNIPROTKB|P77993 - symbol:gyrB "DNA gyrase subunit B" spe... 1151 7.9e-117 1
UNIPROTKB|Q8A277 - symbol:gyrB "DNA gyrase subunit B" spe... 1096 5.3e-111 1
UNIPROTKB|Q8FA30 - symbol:gyrB "DNA gyrase subunit B" spe... 1083 1.3e-109 1
UNIPROTKB|Q74H89 - symbol:gyrB "DNA gyrase subunit B" spe... 898 3.4e-109 2
TIGR_CMR|GSU_0003 - symbol:GSU_0003 "DNA gyrase, B subuni... 898 3.4e-109 2
TIGR_CMR|DET_0004 - symbol:DET_0004 "DNA gyrase, B subuni... 1078 4.3e-109 1
UNIPROTKB|Q3KMH2 - symbol:gyrB_1 "DNA gyrase subunit B" s... 906 1.5e-108 2
UNIPROTKB|Q9KVX3 - symbol:gyrB "DNA gyrase subunit B" spe... 882 1.9e-106 2
TIGR_CMR|VC_0015 - symbol:VC_0015 "DNA gyrase, subunit B"... 882 1.9e-106 2
UNIPROTKB|P0AES6 - symbol:gyrB species:83333 "Escherichia... 887 1.1e-105 2
TIGR_CMR|SO_0011 - symbol:SO_0011 "DNA gyrase, B subunit"... 855 2.2e-105 2
UNIPROTKB|O08399 - symbol:gyrB "DNA gyrase subunit B" spe... 1035 1.6e-104 1
TIGR_CMR|SPO_0155 - symbol:SPO_0155 "DNA gyrase, B subuni... 862 8.3e-104 2
TIGR_CMR|CBU_0004 - symbol:CBU_0004 "DNA gyrase, B subuni... 870 2.8e-103 2
UNIPROTKB|A6UX65 - symbol:gyrB "DNA gyrase subunit B" spe... 860 3.6e-103 2
UNIPROTKB|A9WGP2 - symbol:gyrB "DNA gyrase subunit B" spe... 1017 1.3e-102 1
UNIPROTKB|Q89W70 - symbol:gyrB "DNA gyrase subunit B" spe... 867 5.9e-101 2
TIGR_CMR|BA_3657 - symbol:BA_3657 "DNA topoisomerase IV, ... 1001 6.2e-101 1
UNIPROTKB|P0C5C5 - symbol:gyrB "DNA gyrase subunit B" spe... 910 7.5e-101 2
UNIPROTKB|Q59192 - symbol:parE "DNA topoisomerase 4 subun... 983 5.0e-99 1
TIGR_CMR|NSE_0721 - symbol:NSE_0721 "DNA gyrase, B subuni... 832 1.6e-98 2
UNIPROTKB|Q9RVW5 - symbol:DR_0906 "DNA gyrase, subunit B"... 954 5.9e-96 1
TIGR_CMR|APH_0716 - symbol:APH_0716 "DNA gyrase, B subuni... 804 8.8e-96 2
TIGR_CMR|ECH_0620 - symbol:ECH_0620 "DNA gyrase, B subuni... 784 4.3e-94 2
UNIPROTKB|O67137 - symbol:gyrB "DNA gyrase subunit B" spe... 935 6.1e-94 1
UNIPROTKB|P35886 - symbol:gyrB "DNA gyrase subunit B" spe... 925 7.0e-93 1
UNIPROTKB|Q7RHG3 - symbol:PY04024 "DNA topoisomerase II, ... 522 1.8e-91 4
TIGR_CMR|CJE_0003 - symbol:CJE_0003 "DNA gyrase, B subuni... 904 1.2e-90 1
GENEDB_PFALCIPARUM|PFL1915w - symbol:PFL1915w "dna gyrase... 503 1.4e-87 4
UNIPROTKB|Q8I528 - symbol:GyrB "Term=DNA gyrase subunit B... 503 1.4e-87 4
UNIPROTKB|O69998 - symbol:O69998 "Putative DNA gyrase sub... 704 1.7e-82 2
UNIPROTKB|Q89M38 - symbol:gyrB "DNA gyrase subunit B" spe... 789 1.8e-78 1
UNIPROTKB|A6VD80 - symbol:parE "DNA topoisomerase IV, B s... 686 1.5e-67 1
TIGR_CMR|SPO_1253 - symbol:SPO_1253 "DNA topoisomerase IV... 680 6.5e-67 1
TIGR_CMR|SO_3899 - symbol:SO_3899 "DNA topoisomerase IV, ... 679 8.2e-67 1
UNIPROTKB|Q9KPD9 - symbol:VC_2431 "Topoisomerase IV, subu... 671 5.8e-66 1
TIGR_CMR|VC_2431 - symbol:VC_2431 "topoisomerase IV, subu... 671 5.8e-66 1
TIGR_CMR|CBU_0064 - symbol:CBU_0064 "DNA topoisomerase IV... 670 7.4e-66 1
TAIR|locus:2146658 - symbol:GYRB3 "DNA GYRASE B3" species... 656 2.3e-64 1
UNIPROTKB|P20083 - symbol:parE species:83333 "Escherichia... 653 4.7e-64 1
UNIPROTKB|Q3KL33 - symbol:gyrB_2 "DNA gyrase subunit B" s... 418 1.1e-44 2
UNIPROTKB|Q8A3C1 - symbol:BT_3033 "DNA topoisomerase IV s... 410 1.5e-41 2
DICTYBASE|DDB_G0279737 - symbol:top2mt "DNA topoisomerase... 323 5.0e-26 1
UNIPROTKB|Q8EYL9 - symbol:LA_4194 "DNA gyrase subunit B" ... 307 1.3e-24 1
UNIPROTKB|F1Q2M4 - symbol:TOP2A "DNA topoisomerase 2" spe... 305 8.2e-24 1
UNIPROTKB|J9PAY8 - symbol:TOP2A "DNA topoisomerase 2" spe... 305 8.2e-24 1
MGI|MGI:98790 - symbol:Top2a "topoisomerase (DNA) II alph... 269 1.4e-23 2
UNIPROTKB|P11388 - symbol:TOP2A "DNA topoisomerase 2-alph... 267 1.8e-23 2
UNIPROTKB|P41515 - symbol:TOP2A "DNA topoisomerase 2-alph... 265 3.9e-23 2
RGD|62048 - symbol:Top2a "topoisomerase (DNA) II alpha" s... 270 4.4e-23 2
UNIPROTKB|O46374 - symbol:TOP2A "DNA topoisomerase 2-alph... 262 8.6e-23 2
UNIPROTKB|Q0DYE1 - symbol:Os02g0699700 "DNA topoisomerase... 293 9.4e-23 1
UNIPROTKB|F1MDU7 - symbol:TOP2A "DNA topoisomerase 2" spe... 259 1.5e-22 2
UNIPROTKB|F1NR58 - symbol:TOP2B "DNA topoisomerase 2" spe... 262 1.6e-22 2
UNIPROTKB|O42131 - symbol:TOP2B "DNA topoisomerase 2-beta... 262 1.6e-22 2
UNIPROTKB|E1BZ19 - symbol:TOP2B "DNA topoisomerase 2" spe... 262 1.6e-22 2
WB|WBGene00019884 - symbol:R05D3.12 species:6239 "Caenorh... 252 2.2e-22 2
UNIPROTKB|P34534 - symbol:R05D3.12 "Putative DNA topoisom... 252 2.2e-22 2
UNIPROTKB|E9PCY5 - symbol:TOP2B "DNA topoisomerase 2" spe... 258 3.0e-22 2
UNIPROTKB|Q7RJ69 - symbol:PY03394 "DNA topoisomerase 2" s... 231 3.1e-22 2
ZFIN|ZDB-GENE-041008-136 - symbol:top2b "topoisomerase (D... 257 4.7e-22 2
TAIR|locus:2076201 - symbol:TOPII "AT3G23890" species:370... 289 5.2e-22 1
MGI|MGI:98791 - symbol:Top2b "topoisomerase (DNA) II beta... 258 5.8e-22 2
UNIPROTKB|F1MU48 - symbol:TOP2B "DNA topoisomerase 2" spe... 258 7.3e-22 2
UNIPROTKB|F1PRA7 - symbol:TOP2B "DNA topoisomerase 2" spe... 258 7.3e-22 2
UNIPROTKB|Q64399 - symbol:TOP2B "DNA topoisomerase 2-beta... 258 7.4e-22 2
UNIPROTKB|F1RS45 - symbol:TOP2B "DNA topoisomerase 2" spe... 258 7.4e-22 2
UNIPROTKB|Q02880 - symbol:TOP2B "DNA topoisomerase 2-beta... 258 7.6e-22 2
POMBASE|SPBC1A4.03c - symbol:top2 "DNA topoisomerase II" ... 280 5.4e-21 1
UNIPROTKB|O42130 - symbol:TOP2A "DNA topoisomerase 2-alph... 245 2.0e-20 2
UNIPROTKB|F1M7A0 - symbol:Top2a "DNA topoisomerase 2" spe... 270 2.3e-20 2
UNIPROTKB|F1NZF0 - symbol:TOP2A "DNA topoisomerase 2" spe... 244 2.6e-20 2
UNIPROTKB|E9PTY5 - symbol:Top2a "DNA topoisomerase 2" spe... 270 2.9e-20 2
WB|WBGene00010785 - symbol:top-2 species:6239 "Caenorhabd... 229 8.5e-20 2
UNIPROTKB|Q23670 - symbol:K12D12.1 "Probable DNA topoisom... 229 8.5e-20 2
UNIPROTKB|A8JD08 - symbol:TOP2 "DNA topoisomerase 2" spec... 265 1.8e-19 1
UNIPROTKB|Q755V8 - symbol:AER410W "DNA topoisomerase 2" s... 261 6.7e-19 1
CGD|CAL0005199 - symbol:TOP2 species:5476 "Candida albica... 255 3.2e-18 1
UNIPROTKB|Q5A1E7 - symbol:TOP2 "DNA topoisomerase 2" spec... 255 3.2e-18 1
UNIPROTKB|F1P2F2 - symbol:TOP2A "DNA topoisomerase 2" spe... 244 3.3e-18 2
SGD|S000005032 - symbol:TOP2 "Topoisomerase II, relieves ... 254 4.0e-18 1
FB|FBgn0003732 - symbol:Top2 "Topoisomerase 2" species:72... 212 9.6e-18 2
ZFIN|ZDB-GENE-030131-2453 - symbol:top2a "topoisomerase (... 221 2.9e-16 2
UNIPROTKB|Q7S9W8 - symbol:NCU06338 "DNA topoisomerase 2" ... 207 4.5e-16 2
DICTYBASE|DDB_G0270418 - symbol:top2 "DNA topoisomerase I... 241 1.3e-15 2
ASPGD|ASPL0000029372 - symbol:top2 species:162425 "Emeric... 187 2.5e-15 2
UNIPROTKB|Q5B224 - symbol:AN5406.2 "DNA topoisomerase 2" ... 187 2.5e-15 2
WB|WBGene00022854 - symbol:cin-4 species:6239 "Caenorhabd... 193 1.0e-11 1
UNIPROTKB|G5ECQ8 - symbol:cin-4 "Chromosome instability 4... 193 1.0e-11 1
>TAIR|locus:2146698 [details] [associations]
symbol:GYRB2 "DNA GYRASE B2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0003916 "DNA topoisomerase
activity" evidence=IGI] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005694 GO:GO:0007059 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AL391716
GO:GO:0009330 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
EMBL:AY039521 EMBL:AY142041 IPI:IPI00527008 IPI:IPI00537479
RefSeq:NP_568133.1 RefSeq:NP_850762.1 UniGene:At.10083
ProteinModelPortal:Q94BZ7 SMR:Q94BZ7 STRING:Q94BZ7 PaxDb:Q94BZ7
PRIDE:Q94BZ7 EnsemblPlants:AT5G04130.1 GeneID:830291
KEGG:ath:AT5G04130 GeneFarm:4066 TAIR:At5g04130 eggNOG:COG0187
HOGENOM:HOG000075155 InParanoid:Q94BZ7 KO:K02470 OMA:IGKNEYN
PhylomeDB:Q94BZ7 ProtClustDB:CLSN2689450 Genevestigator:Q94BZ7
GermOnline:AT5G04130 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 Uniprot:Q94BZ7
Length = 732
Score = 2156 (764.0 bits), Expect = 2.5e-223, P = 2.5e-223
Identities = 405/507 (79%), Positives = 448/507 (88%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
ME+ Q YSRGKP+TTLTC VLP++SK +GT IRFWPDK+VFTTAI+FDHNTIAGRIREL
Sbjct: 226 MEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIREL 285
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
AFLNPK+TI+L+KED DPEK QY+EY FAGGL EYV WLNTDK P+HDV+GFR++++G T
Sbjct: 286 AFLNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLGFRREINGAT 345
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+D+ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN+L KKSKTVK+KDISL
Sbjct: 346 VDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISL 405
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXX 240
SGEHVREGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTE+LELHPD+
Sbjct: 406 SGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILES 465
Query: 241 XXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
VR KSVL+SSSLPGKLADCSST PE SEIFIVEGDSAGG
Sbjct: 466 IISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGG 525
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKE LRY
Sbjct: 526 SAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRY 585
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIIILTDADVDGAHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KVERGK QYCYDDA
Sbjct: 586 HKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDA 645
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+LKK+ S+FP+NA Y+IQRFKGLGEMMP QLWETT+NPE R+LKQLV++D AEAN+ FSS
Sbjct: 646 DLKKITSNFPANASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSS 705
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMGARVD RKELI+NAA +NL LDI
Sbjct: 706 LMGARVDVRKELIKNAATRINLQRLDI 732
>UNIPROTKB|Q5NBJ3 [details] [associations]
symbol:GYRB "DNA gyrase subunit B,
chloroplastic/mitochondrial" species:39947 "Oryza sativa Japonica
Group" [GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing)
activity" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524 GO:GO:0009507
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
ProtClustDB:CLSN2689450 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 OMA:IFETTEF EMBL:AP001073 EMBL:AP000969
EMBL:AK102391 RefSeq:NP_001042691.1 UniGene:Os.37563
ProteinModelPortal:Q5NBJ3 STRING:Q5NBJ3 PRIDE:Q5NBJ3 GeneID:4326261
KEGG:dosa:Os01t0268300-01 KEGG:osa:4326261 Gramene:Q5NBJ3
Uniprot:Q5NBJ3
Length = 729
Score = 2050 (726.7 bits), Expect = 4.3e-212, P = 4.3e-212
Identities = 387/506 (76%), Positives = 439/506 (86%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY Q YSRGK +T LT L +S RQGTRIRFWPDK +FTT + FD NTIAGRIRELA
Sbjct: 225 EYRQNYSRGKAITMLTSRTLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELA 284
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLNP+LTIAL KE+ D + Q+NEY +AGGL EYV+WLNTDKK LHD + FRK++DGIT+
Sbjct: 285 FLNPELTIALTKEEDDLQV-QHNEYCYAGGLVEYVKWLNTDKKSLHDPIAFRKEMDGITV 343
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D++LQWCSD+YSDT+LGYANSIRTIDGGTHI+G+K SLTRT+N+ KKSKT+KDKDISLS
Sbjct: 344 DVSLQWCSDSYSDTVLGYANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLS 403
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXX 241
GEHVREG+TCII+V+VPNPEFEGQTKTRLGNPEVR++V+QSVQE LTEYLELHPDV
Sbjct: 404 GEHVREGMTCIIAVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSI 463
Query: 242 XXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
VR KSVL+SSSLPGKLADC+S+ PEESEIFIVEGDSAGGS
Sbjct: 464 LSKSLNALKAALAAKRARELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGS 523
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQAILPLRGKILN+ER+DEAA+YKNEEIQNLI ALGLGVKGEDF KEALRYH
Sbjct: 524 AKQGRDRKFQAILPLRGKILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYH 583
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+ILTDADVDGAHIRTLLLTFF+RYQK LFDEGCIYVGVPPLYKVERGKQ YCYDDA+
Sbjct: 584 KIVILTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDAD 643
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LK++ ++FP+NA Y IQRFKGLGEMMP QLWETT++PE+RMLKQL +EDAAEANVVFSSL
Sbjct: 644 LKELVNTFPTNASYHIQRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSL 703
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RVD RK+LIQNAA++VNL+HLDI
Sbjct: 704 MGTRVDVRKQLIQNAASMVNLEHLDI 729
>UNIPROTKB|Q7NHM9 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
OMA:IFETTEF ProtClustDB:PRK05644 EMBL:BA000045
GenomeReviews:BA000045_GR HSSP:P06982 RefSeq:NP_925452.1
ProteinModelPortal:Q7NHM9 GeneID:2600907 KEGG:gvi:gvip344
PATRIC:22044491 BioCyc:GVIO251221:GH9A-2555-MONOMER Uniprot:Q7NHM9
Length = 644
Score = 1403 (498.9 bits), Expect = 1.6e-143, P = 1.6e-143
Identities = 275/511 (53%), Positives = 353/511 (69%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y Q++ RG P L + DS+ R+GT I F PD ++FTT + FD +T+ R RELA
Sbjct: 139 QYIQRFHRGIPEGGLA---VSSDSQKRRGTMISFLPDPEIFTTGVDFDFDTLLSRFRELA 195
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
FLN + R D E + Y + GG+ EYV+++ +K LH D++ ++ DG++
Sbjct: 196 FLNAG--VEFRFSDLRGETERTESYIYEGGIREYVKYMTREKAALHPDIIFINQERDGVS 253
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
++ ALQW +D Y+D +LG+AN+IRTIDGGTH+EG+KA LTRT NS +K+ +KD D +L
Sbjct: 254 VECALQWSTDVYNDNVLGFANNIRTIDGGTHLEGLKAVLTRTFNSFARKANKLKDGDKNL 313
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXX 240
+GEHVREGLT ++SV+VPNPEFEGQTKT+LGNPEVR +VD + E LTEYLE HPDV
Sbjct: 314 TGEHVREGLTAVLSVKVPNPEFEGQTKTKLGNPEVRGIVDGVISEKLTEYLEFHPDVVAS 373
Query: 241 XXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
VR+KS L SS+LPGKLADC S P ESE+F+VEGDSAGG
Sbjct: 374 ILEKALQSMQAEEAARKARDLVRRKSALESSTLPGKLADCQSRDPAESEVFLVEGDSAGG 433
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDRRFQAILPLRGKILN+ER D+ +Y N EIQ +I LGLG+K E+F LRY
Sbjct: 434 SAKQGRDRRFQAILPLRGKILNIERADDRKIYGNNEIQAMITGLGLGLKTEEFDVGRLRY 493
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE----RGKQVQYC 416
H+III+TDADVDGAHIRTLLLTFFYRY++ L ++G IY+ PPLYK+ R V+YC
Sbjct: 494 HRIIIMTDADVDGAHIRTLLLTFFYRYKRDLVEQGYIYIAQPPLYKISIGGGRNIDVRYC 553
Query: 417 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
Y + E + + N Y +QRFKGLGEM QLWETT+NPE R L+Q+ IEDAAEA+
Sbjct: 554 YSEQEKEAILRGLRENQKYELQRFKGLGEMQADQLWETTMNPETRTLRQVTIEDAAEADR 613
Query: 477 VFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
VF+ LMG RV+ R+E I+ + + LDI
Sbjct: 614 VFNILMGDRVEPRREFIETYGPRLQMADLDI 644
>UNIPROTKB|A8IIG8 [details] [associations]
symbol:TOP3 "DNA gyrase subunit B-like protein"
species:3055 "Chlamydomonas reinhardtii" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
ProtClustDB:CLSN2689450 Gene3D:3.40.50.670 EMBL:DS496117
RefSeq:XP_001690535.1 UniGene:Cre.5744 ProteinModelPortal:A8IIG8
STRING:A8IIG8 EnsemblPlants:EDP05794 GeneID:5716144
KEGG:cre:CHLREDRAFT_114600 BioCyc:CHLAMY:CHLREDRAFT_114600-MONOMER
Uniprot:A8IIG8
Length = 649
Score = 1278 (454.9 bits), Expect = 2.8e-130, P = 2.8e-130
Identities = 265/518 (51%), Positives = 350/518 (67%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKD--RQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
Y Q+YSRG P+ L +LP S++ R GT++RF D +F + + + IA R+ EL
Sbjct: 133 YSQRYSRGAPLEELRVQLLPPGSEEAGRSGTQVRFLYDASIFAKDVAYSADVIATRLHEL 192
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDV-DG 118
AFLN + TI R + Q+ + ++GGL E+V L PLH+ +V R D G
Sbjct: 193 AFLNARATIRFRALRRGKPEGQWQVFQYSGGLREFVGCLQAAYTPLHEALVVTRADGGSG 252
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ ++ ALQW +D++ + + G+ANSI T+DGGTH+EG++A LTR + LG+K+K +KD D
Sbjct: 253 VVVEAALQWAADSFKEEVRGFANSIHTVDGGTHMEGLRAGLTRAVTQLGRKAKQIKDSDP 312
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVX 238
LSGEHVREGL ++SV+VPNPEFEGQTKTRLGNPEVRK+V+ +V E + E+LE HP
Sbjct: 313 PLSGEHVREGLGAVVSVKVPNPEFEGQTKTRLGNPEVRKIVENAVYEAVGEWLEAHPAAL 372
Query: 239 XXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRS--SSLPGKLADCSSTTPEESEIFIVEGD 296
VR+K+ L + S+LPGKLADC+ST EE+EI+IVEGD
Sbjct: 373 AALCAKALTSARAAEAARKARELVRRKTSLFTGRSTLPGKLADCTSTNREETEIYIVEGD 432
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEA--AMYKNEEIQNLIRALG----LGVKG 350
SAGGSAKQ RDRRFQAILPL+GKILNVER +A MYKN EI NLI ALG +GV+
Sbjct: 433 SAGGSAKQARDRRFQAILPLKGKILNVERLTDANELMYKNTEISNLI-ALGYERTVGVRS 491
Query: 351 EDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG 410
+ L Y KI++LTDADVDGAHIRTLLLTF +R++ LF G +YV VPPLYKVERG
Sbjct: 492 RCHAFKLLLYGKIVVLTDADVDGAHIRTLLLTFLFRHRPQLFAAGRVYVAVPPLYKVERG 551
Query: 411 KQVQYCYDDAELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIE 469
K V + + DAEL + S + YS+QRFKGLGEMMP QLW+TTLNPE R+L++L +
Sbjct: 552 KSVWWAHSDAELAALVSEQRLAPGGYSVQRFKGLGEMMPQQLWDTTLNPESRLLRRLTVR 611
Query: 470 DAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
D +EA+ + + LMG +V+ RK LI+ + ++LD LD+
Sbjct: 612 DVSEADSMLTMLMGTKVEPRKALIEAYSRRLSLDALDV 649
>TIGR_CMR|CHY_2705 [details] [associations]
symbol:CHY_2705 "DNA gyrase, B subunit" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075156 RefSeq:YP_361487.1
ProteinModelPortal:Q3A8P7 SMR:Q3A8P7 STRING:Q3A8P7 GeneID:3726578
KEGG:chy:CHY_2705 PATRIC:21278431
BioCyc:CHYD246194:GJCN-2703-MONOMER Uniprot:Q3A8P7
Length = 635
Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
Identities = 243/502 (48%), Positives = 345/502 (68%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+QK+SRG+P+T L + GT I F PD ++F T ++F+++T+A R+ EL++
Sbjct: 145 YYQKFSRGEPITELKI----IGKSKSTGTIITFKPDAEIFET-VEFNYDTLAKRLLELSY 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN + I L+ E + K + E+ +GG+++Y+++LN +K+PLH ++ F K+ D + ++
Sbjct: 200 LNKNVKIILKDERIN--KEEIFEH--SGGIKDYLKYLNKNKEPLHKIIYFEKEKDEVVVE 255
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+ALQ+C+ ++S+ +L + N+I T +GGTH G K +LTR +N KK +K+ ++SL G
Sbjct: 256 VALQYCN-SFSENILSFTNNINTTEGGTHEIGFKTALTRVINDYAKKYNLIKENNLSLQG 314
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXX 242
E +REGLT IISV+VP+P+FEGQTKT+L N EVR +VD V +YL+ YLE +P V
Sbjct: 315 EDIREGLTAIISVKVPDPQFEGQTKTKLVNTEVRSIVDSIVSDYLSTYLEENPAVGKKLI 374
Query: 243 XXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
R+K+ L S++LPGKLADCS P E+++VEGDSAGGSA
Sbjct: 375 ENAIRAARAREAARKARELARRKTALESNTLPGKLADCSEKDPSLCELYLVEGDSAGGSA 434
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQGRDRRFQAILPLRGKILNVE+ + NEEI+ +I ALG GV +DF E RYH+
Sbjct: 435 KQGRDRRFQAILPLRGKILNVEKSRLDKILANEEIRAMITALGTGVD-KDFDIEKARYHR 493
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
+II+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLYKV++GK +Y Y D EL
Sbjct: 494 LIIMTDADVDGAHIRTLLLTFFYRYLRPLIENGYVYIAQPPLYKVKKGKLEKYLYSDDEL 553
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
++ + + +IQR+KGLGEM P QLWETT+NPE R + ++ +EDAA+A+ +F+ LM
Sbjct: 554 ERYLNEIGREGV-TIQRYKGLGEMDPEQLWETTMNPETRTILKVTLEDAAKADEIFTILM 612
Query: 483 GARVDTRKELIQNAANLV-NLD 503
G +V+ R+E I+ A LV NLD
Sbjct: 613 GDKVEPRREFIEKNAKLVRNLD 634
>TIGR_CMR|BA_0005 [details] [associations]
symbol:BA_0005 "DNA gyrase, B subunit" species:198094
"Bacillus anthracis str. Ames" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF EMBL:AF090333
RefSeq:NP_842577.1 RefSeq:YP_016608.1 RefSeq:YP_026296.1
ProteinModelPortal:Q9X3Y6 PRIDE:Q9X3Y6 DNASU:1083919
EnsemblBacteria:EBBACT00000010328 EnsemblBacteria:EBBACT00000015641
EnsemblBacteria:EBBACT00000021045 GeneID:1083919 GeneID:2816408
GeneID:2848886 KEGG:ban:BA_0005 KEGG:bar:GBAA_0005 KEGG:bat:BAS0005
ProtClustDB:PRK05644 BioCyc:BANT260799:GJAJ-5-MONOMER
BioCyc:BANT261594:GJ7F-5-MONOMER Uniprot:Q9X3Y6
Length = 640
Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
Identities = 240/505 (47%), Positives = 331/505 (65%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF--TTAIQFDHNTIAGRIREL 60
++QKY RG PV L + D+ GT RF PD ++F TT +FD T+A R+REL
Sbjct: 146 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFD--TLATRMREL 199
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGI 119
AFLN + + + ED K Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 200 AFLNRNIKLTI--EDKREHK-QKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXX 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 XXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNE 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>UNIPROTKB|P05652 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224308 "Bacillus
subtilis subsp. subtilis str. 168" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
EMBL:D26185 EMBL:X02369 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 ProtClustDB:PRK05644 PIR:E22930 RefSeq:NP_387887.1
ProteinModelPortal:P05652 SMR:P05652 PRIDE:P05652
EnsemblBacteria:EBBACT00000000768 GeneID:939456 KEGG:bsu:BSU00060
PATRIC:18971459 GenoList:BSU00060 HOGENOM:HOG000075156 OMA:MDRILAN
BioCyc:BSUB:BSU00060-MONOMER BindingDB:P05652 ChEMBL:CHEMBL4324
Uniprot:P05652
Length = 638
Score = 1180 (420.4 bits), Expect = 6.7e-120, P = 6.7e-120
Identities = 231/503 (45%), Positives = 324/503 (64%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG PVT L + D GT F PD ++F+ ++D++ +A R+RELAF
Sbjct: 143 HRQTYKRGVPVTDLEI----IGETDHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 199 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N +K +K+ D +LS
Sbjct: 257 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXX 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D + ++ +PD
Sbjct: 316 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKI 375
Query: 242 XXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 376 VDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 436 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D E
Sbjct: 495 KVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ + P +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 555 LEELLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEML 614
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 615 MGDKVEPRRNFIEANARYVKNLD 637
>UNIPROTKB|Q8TQG0 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:188937
"Methanosarcina acetivorans C2A" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE010299
GenomeReviews:AE010299_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644
RefSeq:NP_616517.1 HSSP:P06982 ProteinModelPortal:Q8TQG0
GeneID:1473472 KEGG:mac:MA1584 BioCyc:MACE188937:GI2O-1646-MONOMER
Uniprot:Q8TQG0
Length = 634
Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
Identities = 241/504 (47%), Positives = 327/504 (64%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y Q+Y RGKP V + + GT+ F PD ++F T F ++ ++ R+RELA
Sbjct: 141 KYFQRYIRGKP----EAEVQETGTSEITGTKTTFKPDARIFETT-DFQYDILSNRLRELA 195
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGIT 120
FLN LTI L K+ PE Q + ++GG+ E+V++LN K+PLH+ + F + D +
Sbjct: 196 FLNRGLTINL-KDLRSPE-GQAETFIYSGGIVEFVEYLNKKKQPLHEKPIYFERQRDDMV 253
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q+ +++Y++ + +AN+I T +GGTHI G K +LTR N K +K K+ D L
Sbjct: 254 VEIAMQY-TNSYTENVYSFANNINTHEGGTHIIGFKTALTRVANDYIKANKLSKE-DAKL 311
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXX 240
+G+ VREGLT IISV++ P+FEGQTKTRLGN EV+ +VD V + L EY E +P V
Sbjct: 312 TGDDVREGLTAIISVKLMEPQFEGQTKTRLGNSEVKGIVDSLVTDGLAEYFEENPKVANV 371
Query: 241 XXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
R+KS L S+LPGKLADCS P EI+IVEG+SAGG
Sbjct: 372 ILEKALLAQKAREAAKKARELTRRKSALEVSTLPGKLADCSEKDPSVCEIYIVEGNSAGG 431
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILPLRGKILNVE+ A + KN E+ +LI ALG GV EDF E+ RY
Sbjct: 432 SAKQGRDRGFQAILPLRGKILNVEKSRLAKILKNNEVVSLITALGTGVS-EDFALESARY 490
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK+I++TDADVDGAHIRTLLLT F+RY + L D G +Y+ PPLY++++GK Y + D
Sbjct: 491 HKVILMTDADVDGAHIRTLLLTLFFRYMRPLIDAGYVYIAQPPLYRIKKGKSEYYIHSDR 550
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+ K L +IQR+KGLGEM P QLWETT+NPE R L Q+ +EDA A+ +F
Sbjct: 551 ELEVKKKELGEKGL-AIQRYKGLGEMNPEQLWETTMNPESRTLLQVTLEDALRADEIFRV 609
Query: 481 LMGARVDTRKELIQ-NAANLVNLD 503
LMG V+ R+ I+ +A +V+LD
Sbjct: 610 LMGDEVEPRRNFIETHAKEVVDLD 633
>UNIPROTKB|P77993 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243274
"Thermotoga maritima MSB8" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:AE000512 GenomeReviews:AE000512_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644 EMBL:U49692
PIR:JC4960 RefSeq:NP_228642.1 ProteinModelPortal:P77993 SMR:P77993
DNASU:898504 GeneID:898504 KEGG:tma:TM0833 PATRIC:23936592
Uniprot:P77993
Length = 636
Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
Identities = 238/514 (46%), Positives = 339/514 (65%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGKPVT + + D+ GT +RF PD +F+ +FD + + R+RE+AF
Sbjct: 139 YRQRYERGKPVTPVEV----IGETDKHGTIVRFKPDPLIFSET-EFDPDILEHRLREIAF 193
Query: 63 LNPKLTIALRKEDS-DPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV----- 116
L P L I ED + EK + F GG+ EYV++LN KK LHDV+ ++
Sbjct: 194 LVPGLKIEF--EDRINGEKKTFK---FDGGIVEYVKYLNRGKKALHDVIHIKRTEKVKTK 248
Query: 117 ---DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTV 173
D + +++A Q+ +D+YS+ ++ +AN+I+T+DGGTH+ K++LTR +N GKK +
Sbjct: 249 NGEDEVIVEIAFQY-TDSYSEDIVSFANTIKTVDGGTHVTAFKSTLTRLMNEYGKKHNFL 307
Query: 174 KDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLEL 233
K KD S GE VREGLT +ISV V NPEFEGQTK++LGN EV++ V ++++E L + +
Sbjct: 308 K-KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAMREELKKIFDA 366
Query: 234 HPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIV 293
+P++ VR+K+VL++++LPGKLADCSST E++E+FIV
Sbjct: 367 NPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLADCSSTHREKTELFIV 426
Query: 294 EGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDF 353
EGDSAGGSAKQ RDR FQA+LP+RGKILNVE+ + KNE+I ++I A+G G+ G+DF
Sbjct: 427 EGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVAVGTGI-GDDF 485
Query: 354 KKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV 413
+ LRY +III+TDAD+DGAHIRTLLLT FYRY + L ++G +Y+ +PPLY+++ G++
Sbjct: 486 DESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPPLYRIKAGREE 545
Query: 414 QYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
Y Y D EL + K + IQR+KGLGEM P QLWETT+NPE R + ++ IEDA E
Sbjct: 546 FYVYSDQELAEYKEKLQGKRI-EIQRYKGLGEMNPEQLWETTMNPETRKIIRVTIEDAEE 604
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
A+ +F LMG +R+E I+ A + + LDI
Sbjct: 605 ADRLFEILMGNDPSSRREFIERHA--LKVKELDI 636
>UNIPROTKB|Q8A277 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:226186
"Bacteroides thetaiotaomicron VPI-5482" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075154 HSSP:P06982
RefSeq:NP_812341.1 ProteinModelPortal:Q8A277 GeneID:1074051
KEGG:bth:BT_3429 PATRIC:21061865
BioCyc:BTHE226186:GJXV-3494-MONOMER Uniprot:Q8A277
Length = 653
Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
Identities = 228/512 (44%), Positives = 329/512 (64%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y GKP+ + V V D GTR +FWPD +FT + +D+ +A R+RELA+
Sbjct: 148 YQQEYEIGKPLYS----VKEVGVSDITGTRQQFWPDDTIFTETV-YDYKILASRLRELAY 202
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDVDG 118
LN L I+L R+ ++ + + +E F++ GL E+V+++ + ++ L +DV+ + G
Sbjct: 203 LNAGLRISLTDRRVVNEEDGSFKSEVFYSEEGLREFVRFIESSREHLINDVIYLNSEKQG 262
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I I++A+ + + +S+ + Y N+I TI+GGTH+ G + +LTRTL + SK ++ +
Sbjct: 263 IPIEIAIMY-NTGFSENVHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDSKMLEKVKV 321
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVX 238
+SG+ REGLT +ISV+V P+FEGQTKT+LGN EV VDQ+V E L YLE HP
Sbjct: 322 EISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEVLAYYLEEHPKEA 381
Query: 239 XXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
V++KS + LPGKLADCS P + E+F+VEGDSA
Sbjct: 382 KTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDPSKCELFLVEGDSA 441
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA- 357
GG+AKQGR+R FQAILPLRGKILNVE+ +++EI+N+ ALG+ + ED KEA
Sbjct: 442 GGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYTALGVTIGTEDDSKEAN 501
Query: 358 ---LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
LRYHKIII+TDADVDG+HI TL++TFF+RY + G +Y+ PPLY ++GK +
Sbjct: 502 IEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLYIATPPLYLCKKGKVEE 561
Query: 415 YCYDDAELKKVKSSFPS---NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
YC+ DA+ +K ++ NA+++ QR+KGLGEM QLWETT++P+ RMLKQ+ I++A
Sbjct: 562 YCWTDAQRQKFIDTYGGGLENAVHT-QRYKGLGEMNAQQLWETTMDPDNRMLKQVNIDNA 620
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AEA+ +FS LMG V R+E I+ A N+D
Sbjct: 621 AEADYIFSMLMGEDVGPRREFIEENATYANID 652
>UNIPROTKB|Q8FA30 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644 EMBL:AE010300
GenomeReviews:AE010300_GR HSSP:P06982 RefSeq:NP_710186.1
ProteinModelPortal:Q8FA30 GeneID:1149348 KEGG:lil:LA_0005
PATRIC:22380849 BioCyc:LINT189518:GJBB-5-MONOMER Uniprot:Q8FA30
Length = 639
Score = 1083 (386.3 bits), Expect = 1.3e-109, P = 1.3e-109
Identities = 216/503 (42%), Positives = 318/503 (63%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QKY +G PV+++ + DS +R GT +RF PD +FTT + F + ++ R RELAF
Sbjct: 143 YTQKYEKGVPVSSVQ---IQGDSSER-GTIVRFKPDATIFTT-VDFQFDVLSARFRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN L + + E NE+ F+GG+ +V+ +N +K P+H V+ F ++ D + +
Sbjct: 198 LNKGLVLVVEDHRRGKENILRNEFQFSGGIVSFVEHINENKHPMHKVIHFERNKDDVLAE 257
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLS 181
+++Q+ S+ Y++ + + N+I GGTH+EG +A+LTRTLN KK T+ K LS
Sbjct: 258 ISIQY-SETYTENIFCFTNNINNNLGGTHLEGFRAALTRTLNDFLKKDSTLSKKHPTGLS 316
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXX 241
GE V+EGLT +IS+++P P+F QTK +L N E++ ++ E LT + E +P++
Sbjct: 317 GEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQTLSSEGLTLFFEENPNITKKI 376
Query: 242 XXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
R+K+VL LPGKLADCS P SE+++VEGDSAGGS
Sbjct: 377 LEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADCSEKDPAHSELYLVEGDSAGGS 436
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR QAILPL+GKILNVE+ + +EEI+ L+ ALG G+ ++F + +RYH
Sbjct: 437 AKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIRVLVSALGTGIGEDEFNIDKIRYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDAD+DG+HIRTLLLTFF+RY + + + G +YV PPLY ++ GK Y Y D E
Sbjct: 497 KIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYLYVAQPPLYLIKHGKNSTYVYSDKE 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
+++ + + + IQR+KGLGEM P QLWETT++P R++ ++ ++D EA F+ L
Sbjct: 557 KEELLKNIGAEKVV-IQRYKGLGEMNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNVL 615
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG V RK+ I+ NAA + NLD
Sbjct: 616 MGDEVQPRKQFIEVNAAKVANLD 638
>UNIPROTKB|Q74H89 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 HSSP:P06982 RefSeq:NP_951065.1
ProteinModelPortal:Q74H89 SMR:Q74H89 GeneID:2686080
KEGG:gsu:GSU0003 PATRIC:22022743 BioCyc:GSUL243231:GH27-3-MONOMER
Uniprot:Q74H89
Length = 795
Score = 898 (321.2 bits), Expect = 3.4e-109, Sum P(2) = 3.4e-109
Identities = 181/422 (42%), Positives = 274/422 (64%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y+ G P T L V+ ++K R GT+I F PD +F T +F + ++ R+RELAF
Sbjct: 144 YRQSYACGDPQTPL--EVMG-ETKKR-GTKITFLPDDTIFETT-EFSFDVLSQRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN + I + E E+ +++++ + GG+ +V++LN ++ LH + F+ + G+ +
Sbjct: 199 LNAGVRITITDER---EEGKHHDFHYEGGIVSFVEYLNRNRTALHPKPIYFKGEKAGVEM 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y + + +AN+I T +GGTH+ G +A+LTRT+N+ ++ +K + +++S
Sbjct: 256 EVALQY-NDSYDEKVFSFANNINTHEGGTHLVGFRAALTRTMNTYAAANELLKKEKVAIS 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXX 241
GE +REGLT +ISV++P P+FEGQTKT+LGN EV+ V+ + E L +LE +P +
Sbjct: 315 GEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGYVESLMNEKLAVFLEENPKIAKDI 374
Query: 242 XXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
R+K L S+LPGKLADC P E+++VEGDSAGGS
Sbjct: 375 IGKSIEAARAREAARKARELTRRKGALDISNLPGKLADCQERDPALCELYLVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQAILPL+GKILNVE+ M ++EI LI ALG G+ +DF LRYH
Sbjct: 435 AKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEIGTLITALGTGIGKDDFDIAKLRYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+II++TDADVDG+HI TLLLTFF+R + + G +Y+ PPLYKV+RG++ Y ++A
Sbjct: 495 RIIVMTDADVDGSHILTLLLTFFFRQMPEVVERGHLYIAQPPLYKVKRGRKELYLRNEAA 554
Query: 422 LK 423
++
Sbjct: 555 MQ 556
Score = 201 (75.8 bits), Expect = 3.4e-109, Sum P(2) = 3.4e-109
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 436 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-Q 494
SIQR+KGLGEM P QLWETT+ P R L Q+ IEDA EA+ +F+ LMG +V+ R++ I Q
Sbjct: 726 SIQRYKGLGEMNPEQLWETTMEPVNRTLLQVKIEDAIEADTIFTILMGDQVEPRRDFIEQ 785
Query: 495 NAANLVNLD 503
NA N+ NLD
Sbjct: 786 NALNVSNLD 794
Score = 38 (18.4 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 185 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEY 230
V EGL +VR + G T + + V ++VD S+ E L Y
Sbjct: 16 VLEGLE---AVRKRPAMYIGSTAAQGLHHLVYEIVDNSIDEALAGY 58
>TIGR_CMR|GSU_0003 [details] [associations]
symbol:GSU_0003 "DNA gyrase, B subunit" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 EMBL:AE017180
GenomeReviews:AE017180_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939 HSSP:P06982
RefSeq:NP_951065.1 ProteinModelPortal:Q74H89 SMR:Q74H89
GeneID:2686080 KEGG:gsu:GSU0003 PATRIC:22022743
BioCyc:GSUL243231:GH27-3-MONOMER Uniprot:Q74H89
Length = 795
Score = 898 (321.2 bits), Expect = 3.4e-109, Sum P(2) = 3.4e-109
Identities = 181/422 (42%), Positives = 274/422 (64%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y+ G P T L V+ ++K R GT+I F PD +F T +F + ++ R+RELAF
Sbjct: 144 YRQSYACGDPQTPL--EVMG-ETKKR-GTKITFLPDDTIFETT-EFSFDVLSQRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN + I + E E+ +++++ + GG+ +V++LN ++ LH + F+ + G+ +
Sbjct: 199 LNAGVRITITDER---EEGKHHDFHYEGGIVSFVEYLNRNRTALHPKPIYFKGEKAGVEM 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y + + +AN+I T +GGTH+ G +A+LTRT+N+ ++ +K + +++S
Sbjct: 256 EVALQY-NDSYDEKVFSFANNINTHEGGTHLVGFRAALTRTMNTYAAANELLKKEKVAIS 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXX 241
GE +REGLT +ISV++P P+FEGQTKT+LGN EV+ V+ + E L +LE +P +
Sbjct: 315 GEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGYVESLMNEKLAVFLEENPKIAKDI 374
Query: 242 XXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
R+K L S+LPGKLADC P E+++VEGDSAGGS
Sbjct: 375 IGKSIEAARAREAARKARELTRRKGALDISNLPGKLADCQERDPALCELYLVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQAILPL+GKILNVE+ M ++EI LI ALG G+ +DF LRYH
Sbjct: 435 AKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEIGTLITALGTGIGKDDFDIAKLRYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+II++TDADVDG+HI TLLLTFF+R + + G +Y+ PPLYKV+RG++ Y ++A
Sbjct: 495 RIIVMTDADVDGSHILTLLLTFFFRQMPEVVERGHLYIAQPPLYKVKRGRKELYLRNEAA 554
Query: 422 LK 423
++
Sbjct: 555 MQ 556
Score = 201 (75.8 bits), Expect = 3.4e-109, Sum P(2) = 3.4e-109
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 436 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-Q 494
SIQR+KGLGEM P QLWETT+ P R L Q+ IEDA EA+ +F+ LMG +V+ R++ I Q
Sbjct: 726 SIQRYKGLGEMNPEQLWETTMEPVNRTLLQVKIEDAIEADTIFTILMGDQVEPRRDFIEQ 785
Query: 495 NAANLVNLD 503
NA N+ NLD
Sbjct: 786 NALNVSNLD 794
Score = 38 (18.4 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 185 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEY 230
V EGL +VR + G T + + V ++VD S+ E L Y
Sbjct: 16 VLEGLE---AVRKRPAMYIGSTAAQGLHHLVYEIVDNSIDEALAGY 58
>TIGR_CMR|DET_0004 [details] [associations]
symbol:DET_0004 "DNA gyrase, B subunit" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000027
GenomeReviews:CP000027_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644
RefSeq:YP_180759.1 ProteinModelPortal:Q3ZAJ0 STRING:Q3ZAJ0
GeneID:3229139 KEGG:det:DET0004 PATRIC:21607113
BioCyc:DETH243164:GJNF-4-MONOMER Uniprot:Q3ZAJ0
Length = 642
Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
Identities = 225/503 (44%), Positives = 315/503 (62%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y RGKP T L V D GT F D Q+F+T ++D T+ R+RE+A+
Sbjct: 151 YQQSYQRGKPSTPLE----EVGVSDGSGTTTIFKADSQIFSTT-EYDFETLTDRLREIAY 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L + + E SD E+ Y+F GG+ +V+ LN +++ H + K D +
Sbjct: 206 LNKGLEVYIYDEQSDQERT----YYFEGGITGFVRHLNRNREVRHRQPIYITKKSDSTIL 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D YSD+ L +AN + TIDGGTH+ G +++LTR N KSK +KD D +L
Sbjct: 262 EVAIQY-NDGYSDSTLTFANCVNTIDGGTHLTGFRSALTRAFNDYAHKSKFLKDTDPNLM 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXX 241
G+ VREG+ I+SV++P P+FEGQTK +LGN E++ V+ +V E L+ YLE HPD
Sbjct: 321 GDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVESAVTEQLSLYLEEHPDDTKRI 380
Query: 242 XXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ +KS L + +LPGKLADCS E+F+VEGDSAGGS
Sbjct: 381 LEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCSERDASLCELFLVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+RRFQAILPLRGKILNVE+ M +EEI+ +I AL G+ DF LRY+
Sbjct: 441 AKQGRNRRFQAILPLRGKILNVEKASPDKMLAHEEIRAIITALAAGIDN-DFDPAKLRYN 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+++++TDADVDG+HIRTLLLTFF+R+ L E +++ PPLYK++ G + Y+DAE
Sbjct: 500 RLVLMTDADVDGSHIRTLLLTFFFRHMPRLITESHLFIAQPPLYKIKIGSNEHWVYNDAE 559
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
+ + S SN + IQR+KGLGEM QLW+TT++P R L ++ +EDAA+A+ +F+ L
Sbjct: 560 KETLLSQTKSNKV-DIQRYKGLGEMSAEQLWKTTMDPASRTLLEVKVEDAAKADQIFNLL 618
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG V RK IQ+ + V NLD
Sbjct: 619 MGGEVAPRKAFIQSHSKTVKNLD 641
>UNIPROTKB|Q3KMH2 [details] [associations]
symbol:gyrB_1 "DNA gyrase subunit B" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:CP000051
GenomeReviews:CP000051_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_327998.1 ProteinModelPortal:Q3KMH2
STRING:Q3KMH2 GeneID:3687234 KEGG:cta:CTA_0208 PATRIC:32022282
BioCyc:CTRA315277:GI4C-250-MONOMER Uniprot:Q3KMH2
Length = 804
Score = 906 (324.0 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
Identities = 191/426 (44%), Positives = 266/426 (62%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y ++SRG P+TTL VL D++GT + F+PD +F+T + FD + R+RELAF
Sbjct: 149 YSMEFSRGAPLTTL--QVL--GPTDKRGTEVLFYPDPAIFSTCV-FDRAILMKRLRELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK-----PLHDVVGFRKDVD 117
LN +TI ++D D ++ +F+ GG++ +V +LN +K+ P++ + G R D
Sbjct: 204 LNRGVTIVF-EDDRDTGFDKV-VFFYEGGIQSFVSYLNQNKEILFPNPIY-MQGSRPGDD 260
Query: 118 G-ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
G I + ALQW S YS+ + YAN+I T GGTH+ G +LTR +NS K K
Sbjct: 261 GDIEFEAALQWNS-GYSELIYSYANNIPTRQGGTHLTGFSTALTRAVNSYIKAHNLSKSD 319
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
+SL+GE ++EGL I+SV+VPNP+FEGQTK +LGN +V V Q E LT + E +P
Sbjct: 320 KLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVGSVSQQISGEVLTTFFEENPQ 379
Query: 237 VXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
+ +KS L S+ LPGKL DC PE+ E++IVEGD
Sbjct: 380 IAKTIVDKVFVAAQAREAAKRARELTLRKSALDSARLPGKLIDCLEKDPEKCEMYIVEGD 439
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SAGGSAKQGRDRRFQAILP+RGKILNVE+ +++N+EI ++I ALG G+ ++F
Sbjct: 440 SAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQEIGSIIAALGCGIGKDNFNLS 499
Query: 357 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 416
LRY +III+TDADVDG+HIRTLLLTFFYR+ L + C+Y+ PPLY+V + K +Y
Sbjct: 500 KLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENECVYIAQPPLYRVSKKKDFRYI 559
Query: 417 YDDAEL 422
+ E+
Sbjct: 560 LSEKEM 565
Score = 187 (70.9 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
Identities = 36/71 (50%), Positives = 53/71 (74%)
Query: 437 IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNA 496
IQR+KGLGEM QLW+TT+NPEQR L ++ ++DA EA+ +F+ LMG V R+E I++
Sbjct: 734 IQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAVEADHIFTMLMGEEVPPRREFIESH 793
Query: 497 ANLVNLDHLDI 507
A + +++LDI
Sbjct: 794 ALSIRMNNLDI 804
Score = 41 (19.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 318 GKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
G L+ + EAA+ NEE + I L G E+ +++
Sbjct: 643 GSYLHSHEEKEAAIAANEESASRILELYKGSVLEELQRD 681
>UNIPROTKB|Q9KVX3 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF
ProtClustDB:PRK14939 PIR:H82376 RefSeq:NP_062599.1
ProteinModelPortal:Q9KVX3 SMR:Q9KVX3 PRIDE:Q9KVX3 DNASU:2615137
GeneID:2615137 KEGG:vch:VC0015 PATRIC:20079078 Uniprot:Q9KVX3
Length = 805
Score = 882 (315.5 bits), Expect = 1.9e-106, Sum P(2) = 1.9e-106
Identities = 180/424 (42%), Positives = 260/424 (61%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y G P L V +R GT +RFWP Q FT I+F ++ +A R+REL+F
Sbjct: 141 HSQTYHHGVPQAPLAV----VGETERTGTTVRFWPSAQTFTN-IEFHYDILAKRLRELSF 195
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKD-VDGIT 120
LN ++I L E + +K+ + + GG++ +V LN +K P+H+ V F ++ DGI+
Sbjct: 196 LNSGVSIKLTDEREEDKKDHF---MYEGGIQAFVTHLNRNKTPIHEKVFHFNQEREDGIS 252
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+QW +D + + + + N+I DGGTH+ G + +LTRTLN+ K K +
Sbjct: 253 VEVAMQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAAT 311
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXX 240
SG+ REGLT ++SV+VP+P+F QTK +L + EV+ V+ ++ E L ++L +P
Sbjct: 312 SGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKN 371
Query: 241 XXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
R+K L + LPGKLADC P SE++IVEGDSAGG
Sbjct: 372 VCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGG 431
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGR+R+ QAILPL+GKILNVE+ M ++E+ LI ALG G+ +++ + LRY
Sbjct: 432 SAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRY 491
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
H III+TDADVDG+HIRTLLLTFFYR L + G IY+ PPLYKV++GKQ QY D+
Sbjct: 492 HNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEE 551
Query: 421 ELKK 424
+ +
Sbjct: 552 AMNQ 555
Score = 191 (72.3 bits), Expect = 1.9e-106, Sum P(2) = 1.9e-106
Identities = 38/69 (55%), Positives = 52/69 (75%)
Query: 436 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ- 494
SIQR+KGLGEM P QLWETT++PE R + Q+ IEDA A+ +F++LMG +V+ R+ I+
Sbjct: 736 SIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIET 795
Query: 495 NAANLVNLD 503
NA + NLD
Sbjct: 796 NALKVANLD 804
>TIGR_CMR|VC_0015 [details] [associations]
symbol:VC_0015 "DNA gyrase, subunit B" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880
OMA:IFETTEF ProtClustDB:PRK14939 PIR:H82376 RefSeq:NP_062599.1
ProteinModelPortal:Q9KVX3 SMR:Q9KVX3 PRIDE:Q9KVX3 DNASU:2615137
GeneID:2615137 KEGG:vch:VC0015 PATRIC:20079078 Uniprot:Q9KVX3
Length = 805
Score = 882 (315.5 bits), Expect = 1.9e-106, Sum P(2) = 1.9e-106
Identities = 180/424 (42%), Positives = 260/424 (61%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y G P L V +R GT +RFWP Q FT I+F ++ +A R+REL+F
Sbjct: 141 HSQTYHHGVPQAPLAV----VGETERTGTTVRFWPSAQTFTN-IEFHYDILAKRLRELSF 195
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKD-VDGIT 120
LN ++I L E + +K+ + + GG++ +V LN +K P+H+ V F ++ DGI+
Sbjct: 196 LNSGVSIKLTDEREEDKKDHF---MYEGGIQAFVTHLNRNKTPIHEKVFHFNQEREDGIS 252
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+QW +D + + + + N+I DGGTH+ G + +LTRTLN+ K K +
Sbjct: 253 VEVAMQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAAT 311
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXX 240
SG+ REGLT ++SV+VP+P+F QTK +L + EV+ V+ ++ E L ++L +P
Sbjct: 312 SGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKN 371
Query: 241 XXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
R+K L + LPGKLADC P SE++IVEGDSAGG
Sbjct: 372 VCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGG 431
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGR+R+ QAILPL+GKILNVE+ M ++E+ LI ALG G+ +++ + LRY
Sbjct: 432 SAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRY 491
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
H III+TDADVDG+HIRTLLLTFFYR L + G IY+ PPLYKV++GKQ QY D+
Sbjct: 492 HNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEE 551
Query: 421 ELKK 424
+ +
Sbjct: 552 AMNQ 555
Score = 191 (72.3 bits), Expect = 1.9e-106, Sum P(2) = 1.9e-106
Identities = 38/69 (55%), Positives = 52/69 (75%)
Query: 436 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ- 494
SIQR+KGLGEM P QLWETT++PE R + Q+ IEDA A+ +F++LMG +V+ R+ I+
Sbjct: 736 SIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIET 795
Query: 495 NAANLVNLD 503
NA + NLD
Sbjct: 796 NALKVANLD 804
>UNIPROTKB|P0AES6 [details] [associations]
symbol:gyrB species:83333 "Escherichia coli K-12"
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA;IMP] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=IDA] [GO:0006265
"DNA topological change" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA;IDA] [GO:0042493 "response to drug"
evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046677 "response to antibiotic"
evidence=IEA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0042493 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046677
GO:GO:0006351 EMBL:L10328 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009330 GO:GO:0009295 EMBL:X04341
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 PDB:3NUH PDBsum:3NUH
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK14939
EMBL:D87842 EMBL:M15548 PIR:D65172 RefSeq:YP_026241.1
RefSeq:YP_491736.1 PDB:1AJ6 PDB:1EI1 PDB:1KZN PDB:3G7E PDB:4DUH
PDBsum:1AJ6 PDBsum:1EI1 PDBsum:1KZN PDBsum:3G7E PDBsum:4DUH
ProteinModelPortal:P0AES6 SMR:P0AES6 DIP:DIP-48005N IntAct:P0AES6
PaxDb:P0AES6 PRIDE:P0AES6 EnsemblBacteria:EBESCT00000002623
EnsemblBacteria:EBESCT00000017095 GeneID:12930543 GeneID:948211
KEGG:ecj:Y75_p3474 KEGG:eco:b3699 PATRIC:32122895 EchoBASE:EB0419
EcoGene:EG10424 BioCyc:EcoCyc:EG10424-MONOMER
BioCyc:ECOL316407:JW5625-MONOMER BioCyc:MetaCyc:EG10424-MONOMER
BindingDB:P0AES6 ChEMBL:CHEMBL1826 DrugBank:DB00817
EvolutionaryTrace:P0AES6 Genevestigator:P0AES6 Uniprot:P0AES6
Length = 804
Score = 887 (317.3 bits), Expect = 1.1e-105, Sum P(2) = 1.1e-105
Identities = 177/427 (41%), Positives = 260/427 (60%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y G P L ++ GT +RFWP + FT +F++ +A R+REL+F
Sbjct: 141 HRQIYEHGVPQAPLAV----TGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN ++I LR D + + + + GG++ +V++LN +K P+H ++ F + DGI +
Sbjct: 197 LNSGVSIRLR----DKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGV 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQW +D + + + + N+I DGGTH+ G +A++TRTLN+ K K +S +
Sbjct: 253 EVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT 311
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXX 241
G+ REGL ++SV+VP+P+F QTK +L + EV+ V+Q + E L EYL +P
Sbjct: 312 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIV 371
Query: 242 XXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
R+K L + LPGKLADC P SE+++VEGDSAGGS
Sbjct: 372 VGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R+ QAILPL+GKILNVE+ M ++E+ LI ALG G+ +++ + LRYH
Sbjct: 432 AKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYH 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
III+TDADVDG+HIRTLLLTFFYR + + G +Y+ PPLYKV++GKQ QY DD
Sbjct: 492 SIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEA 551
Query: 422 LKKVKSS 428
+ + + S
Sbjct: 552 MDQYQIS 558
Score = 179 (68.1 bits), Expect = 1.1e-105, Sum P(2) = 1.1e-105
Identities = 43/100 (43%), Positives = 64/100 (64%)
Query: 407 VERGKQVQ--YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLK 464
+ERG++ Q ++ A VK S L SIQR+KGLGEM P QLWETT++PE R +
Sbjct: 707 IERGERRQPVASFEQALDWLVKES--RRGL-SIQRYKGLGEMNPEQLWETTMDPESRRML 763
Query: 465 QLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 503
++ ++DA A+ +F++LMG V+ R+ I+ NA N+D
Sbjct: 764 RVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANID 803
>TIGR_CMR|SO_0011 [details] [associations]
symbol:SO_0011 "DNA gyrase, B subunit" species:211586
"Shewanella oneidensis MR-1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0006261 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 HSSP:P06982 RefSeq:NP_715653.1
ProteinModelPortal:Q8EKS9 SMR:Q8EKS9 GeneID:1167909
KEGG:son:SO_0011 PATRIC:23519713 Uniprot:Q8EKS9
Length = 805
Score = 855 (306.0 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
Identities = 182/448 (40%), Positives = 267/448 (59%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y+ G P + + + GT IRFWP +Q F+ ++F +A R+REL+F
Sbjct: 142 HEQFYTHGVP----DAPIKEIGDATKTGTEIRFWPSEQTFSN-VEFHFEILAKRVRELSF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD-GIT 120
LN + +R D KN++ +Y GG+ +V +LN +K P++ DV F ++ D GIT
Sbjct: 197 LNSG--VGIRLVDERDNKNEFFKY--EGGISAFVDYLNRNKTPVNKDVFHFMQERDDGIT 252
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+QW +D Y + + + N+I DGGTH+ G +++LTR LN+ + K +
Sbjct: 253 VEVAMQW-NDGYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNA 311
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXX 240
+G+ REGLT +ISV+VP+P+F QTK +L + EV+ V+Q++ E L +YL +P
Sbjct: 312 TGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKL 371
Query: 241 XXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
R+K L LPGKLADC P SEI+IVEGDSAGG
Sbjct: 372 IVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGG 431
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGR+R+ QAILPL+GKILNVE+ M ++E+ LI ALG G+ +++ + RY
Sbjct: 432 SAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRY 491
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
H III+TDADVDG+HIRTLLLTFF+R L + G +Y+ PPL+KV++GKQ QY D++
Sbjct: 492 HNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFKVKKGKQEQYLKDES 551
Query: 421 ELKK--VKSSFPSNALYSIQRFKGL-GE 445
L + + ++Y Q G+ GE
Sbjct: 552 ALTQYLTTQALDGTSIYPSQGAPGMSGE 579
Score = 208 (78.3 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
Identities = 52/111 (46%), Positives = 69/111 (62%)
Query: 394 EGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWE 453
EG I VG Y V+RG +V+ E S LY IQR+KGLGEM P QLWE
Sbjct: 699 EGLIEVGG---Y-VQRGDRVKEVGSFIEALDWTISEAKRGLY-IQRYKGLGEMNPEQLWE 753
Query: 454 TTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 503
TT++PE R + Q+ I+DA A+ +F+ LMG +V+ R+E I+ NA N+ NLD
Sbjct: 754 TTMDPESRRMLQVTIDDAVGADQLFTCLMGDQVEPRREFIEANALNVANLD 804
>UNIPROTKB|O08399 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243276
"Treponema pallidum subsp. pallidum str. Nichols" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AE000520
GenomeReviews:AE000520_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644
EMBL:U78094 PIR:H71254 RefSeq:NP_219443.1 ProteinModelPortal:O08399
IntAct:O08399 GeneID:2610807 KEGG:tpa:TP1006 PATRIC:20532137
Uniprot:O08399
Length = 637
Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
Identities = 224/513 (43%), Positives = 315/513 (61%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSK---DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIR 58
EY+QK++ G P+ PV+ + +++GT IR+ D +F + +D + + R+R
Sbjct: 139 EYYQKFNVGMPLA-------PVEKRGVSEKRGTIIRWQADPSIFKETVAYDFDVLLTRLR 191
Query: 59 ELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK-----KPLHDVVGFR 113
ELAFLN + I LR E K E+ F GG+ +V +LN K +PL+ + G +
Sbjct: 192 ELAFLNSTVVIQLRDERLATAKQV--EFAFEGGIRHFVSYLNRGKSVVPERPLY-IEGSK 248
Query: 114 KDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKS-KT 172
DV +++ALQ+ D Y++ + + N I T +GGTH+EG K++LTR N KKS K
Sbjct: 249 SDV---LVEVALQY-HDGYTENVQSFVNDINTREGGTHLEGFKSALTRVANDFLKKSPKL 304
Query: 173 VK--DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEY 230
K +++ L GE VR GLT ++SV++P P+FEGQTKT+LGN EVR +VD V E LT Y
Sbjct: 305 AKKIEREEKLVGEDVRAGLTVVLSVKIPEPQFEGQTKTKLGNSEVRGIVDSLVGERLTLY 364
Query: 231 LELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEI 290
E +P V R+KS + S LPGKLADCS P + E+
Sbjct: 365 FEQNPGVLTKILEKSIAEAQARLAARRAKEAARRKSGMDSFGLPGKLADCSLKDPAKCEV 424
Query: 291 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG 350
+IVEGDSAGGSAK+GRD + QAILPL GK+LNVE+ + NE++Q +I LG GV G
Sbjct: 425 YIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLHNEKLQPIIATLGTGV-G 483
Query: 351 EDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG 410
+DF +RYHK+II+ DADVDG+HIRTLLLTFF+RY + + G +Y+ +PPLY++
Sbjct: 484 KDFDLTRIRYHKVIIMADADVDGSHIRTLLLTFFFRYLPQIIEAGYVYLAMPPLYRIAWS 543
Query: 411 KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED 470
K+ Y Y D E + S + ++QR+KGLGEM QLWETT+NP +R + Q+V+ D
Sbjct: 544 KKELYVYSDTERDEALESIGKKSGVAVQRYKGLGEMDGTQLWETTMNPVRRKMMQVVLSD 603
Query: 471 AAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A EA+ VFS+LMG V+ R++ I+ A LD
Sbjct: 604 AVEADRVFSTLMGEDVEPRRKFIEENAIYARLD 636
>TIGR_CMR|SPO_0155 [details] [associations]
symbol:SPO_0155 "DNA gyrase, B subunit" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_165427.1 ProteinModelPortal:Q5LWU8
SMR:Q5LWU8 GeneID:3194940 KEGG:sil:SPO0155 PATRIC:23373557
Uniprot:Q5LWU8
Length = 805
Score = 862 (308.5 bits), Expect = 8.3e-104, Sum P(2) = 8.3e-104
Identities = 182/422 (43%), Positives = 257/422 (60%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E+ ++ RG V L V+ + DR GT +RF F+ + + T+ R+RELA
Sbjct: 146 EHVARFERGDTVEHL--RVVG-ECGDRTGTEVRFLASTTTFSN-LDYVFETLEKRLRELA 201
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGIT 120
FLN + I L D P + E F+ GG+ E+V++L+ K P+ + F+ + D I
Sbjct: 202 FLNSGVRIILI--DERPAERIETELFYEGGVREFVKYLDRSKSPVMPAPIYFKGERDDIG 259
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+ W +D+Y +T+L + N+I DGGTH+ G + +LTRT+N+ + S K + I+
Sbjct: 260 VEIAMWW-NDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQSSGIAKREKINF 318
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXX 240
+G+ REGLTC++SV+VP+P+F QTK +L + EVR V+ V E L E+ E +P+V
Sbjct: 319 TGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLVNEKLAEWFEENPNVAKQ 378
Query: 241 XXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
R+K+ + + L GKL DCS P ++E+F+VEGDSAGG
Sbjct: 379 IVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTEVFLVEGDSAGG 438
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SA+ GRDRR QA+LPLRGKILNVER M ++EI NL+ ALG G+ ++F LRY
Sbjct: 439 SAQTGRDRRTQAVLPLRGKILNVERARFDRMLGSQEIGNLVMALGTGIGRDEFNISKLRY 498
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKI+I+TDADVDGAHIRTLLLTFFYR L + G +Y+ PPLYKV RGK Y D A
Sbjct: 499 HKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQPPLYKVARGKSEVYLKDQA 558
Query: 421 EL 422
L
Sbjct: 559 AL 560
Score = 186 (70.5 bits), Expect = 8.3e-104, Sum P(2) = 8.3e-104
Identities = 37/69 (53%), Positives = 51/69 (73%)
Query: 436 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ- 494
++QR+KGLGEM P QLWETTL+P+ R L Q+ + D EA+ +F+ LMG V+ R+E IQ
Sbjct: 736 TLQRYKGLGEMNPEQLWETTLDPDARTLLQVRVNDMVEADDIFTKLMGDSVEPRREFIQQ 795
Query: 495 NAANLVNLD 503
NA ++ NLD
Sbjct: 796 NALSVENLD 804
>TIGR_CMR|CBU_0004 [details] [associations]
symbol:CBU_0004 "DNA gyrase, B subunit" species:227377
"Coxiella burnetii RSA 493" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:NP_819060.2 ProteinModelPortal:Q83FD5
PRIDE:Q83FD5 GeneID:1207924 KEGG:cbu:CBU_0004 PATRIC:17928685
BioCyc:CBUR227377:GJ7S-5-MONOMER Uniprot:Q83FD5
Length = 810
Score = 870 (311.3 bits), Expect = 2.8e-103, Sum P(2) = 2.8e-103
Identities = 181/421 (42%), Positives = 256/421 (60%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y G P L D+ GT IRF P +F+ +F ++ +A R+RELAF
Sbjct: 147 YTQTYKMGVPQAPLAV----TGKSDKTGTEIRFKPSNAIFSNT-EFHYDILAKRLRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + +R E +D + + + + GG++ +V+ LN K P+H DV F + + I +
Sbjct: 202 LN----LGVRIELTDERSGRGDIFEYEGGIKAFVEHLNKKKTPIHSDVFHFSTEKNDIVV 257
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+QW +D + +T+ + N+I DGGTH+ G +A+LTRTLN+ + K +++S
Sbjct: 258 EVAMQW-NDGFQETIFCFTNNIPQNDGGTHLAGFRAALTRTLNNYIEGEALAKKSKVTIS 316
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXX 241
G+ REGLT ++SV+VP+P+F QTK +L + EV+ VV+ +V + L +YL +P
Sbjct: 317 GDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEVKPVVESTVAKQLHDYLLENPKQARII 376
Query: 242 XXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
R+K+VL LPGKLADC P E+F+VEGDSAGGS
Sbjct: 377 AMKVIDAARAREAARKARDMTRRKNVLDLGGLPGKLADCQEKDPALCELFLVEGDSAGGS 436
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQ RDRR+QAILPL+GKILNVE+ M + E+ LI ALG G+ E++ + LRYH
Sbjct: 437 AKQARDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGKEEYNPDKLRYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+II++TDADVDG+HIRTLLLTFFYR L + G IY+ PPLYKV++ KQ QY DD
Sbjct: 497 RIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVKKSKQEQYVKDDLA 556
Query: 422 L 422
L
Sbjct: 557 L 557
Score = 173 (66.0 bits), Expect = 2.8e-103, Sum P(2) = 2.8e-103
Identities = 37/69 (53%), Positives = 50/69 (72%)
Query: 436 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-Q 494
+IQR+KGLGEM P QLWETT++ E R L + IEDA A+ +F++LMG +V+ R+ I Q
Sbjct: 741 NIQRYKGLGEMNPDQLWETTMDRESRRLLSVSIEDAVMADEIFTTLMGDQVEPRRLFIEQ 800
Query: 495 NAANLVNLD 503
NA + NLD
Sbjct: 801 NALAVENLD 809
>UNIPROTKB|A6UX65 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:381754
"Pseudomonas aeruginosa PA7" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_001345400.1 ProteinModelPortal:A6UX65 SMR:A6UX65
STRING:A6UX65 GeneID:5358744 KEGG:pap:PSPA7_0004 PATRIC:19821910
BioCyc:PAER381754:GHMY-79-MONOMER Uniprot:A6UX65
Length = 806
Score = 860 (307.8 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
Identities = 187/446 (41%), Positives = 270/446 (60%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y G P L V D GT + F P + F+ I F + +A RIREL+F
Sbjct: 143 WEQVYHHGVPQFPLR----EVGETDGSGTEVHFKPSPETFSN-IHFSWDILAKRIRELSF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPLHDVVGF--RKDVDGI 119
LN + I LR E + E E F + GGL+ +V++LNT+K ++ V F +++ DG+
Sbjct: 198 LNSGVGILLRDERTGKE-----ELFKYEGGLKAFVEYLNTNKSAVNQVFHFNVQREEDGV 252
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQW +D++++ +L + N+I DGGTH+ G +++LTR LN+ + K I+
Sbjct: 253 GVEVALQW-NDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNNYIEAEGLAKKFKIA 311
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXX 239
+G+ REGLT IISV+VP+P+F QTK +L + EV+ V+Q + +Y ++L +P+
Sbjct: 312 TTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAK 371
Query: 240 XXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
R+K L + LPGKLADC P SE++IVEGDSAG
Sbjct: 372 AVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 431
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGR+RR QAILPL+GKILNVE+ M ++E+ LI ALG G+ E++ + LR
Sbjct: 432 GSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGREEYNIDKLR 491
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YH III+TDADVDG+HIRTLLLTFF+R L + G +Y+ PPLYKV+RGKQ QY DD
Sbjct: 492 YHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLYKVKRGKQEQYIKDD 551
Query: 420 AELKK--VKSSFPSNALYSIQRFKGL 443
+++ +S+ +L+ + GL
Sbjct: 552 QAMEEYMTQSALEDASLHVNEHAPGL 577
Score = 182 (69.1 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
Identities = 36/70 (51%), Positives = 52/70 (74%)
Query: 435 YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 494
+SIQR+KGLGEM P QLWETT++P R + ++ IEDA A+ +F++LMG V+ R++ I+
Sbjct: 736 HSIQRYKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIE 795
Query: 495 -NAANLVNLD 503
NA + NLD
Sbjct: 796 SNALAVSNLD 805
>UNIPROTKB|A9WGP2 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:324602
"Chloroflexus aurantiacus J-10-fl" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:CP000909 GenomeReviews:CP000909_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
OMA:IFETTEF ProtClustDB:PRK05644 HOGENOM:HOG000075154
RefSeq:YP_001636597.1 ProteinModelPortal:A9WGP2 STRING:A9WGP2
GeneID:5827483 KEGG:cau:Caur_3009 PATRIC:21417339
BioCyc:CAUR324602:GIXU-3058-MONOMER Uniprot:A9WGP2
Length = 636
Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
Identities = 210/503 (41%), Positives = 302/503 (60%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y G PVT V+ ++ DR GT RF PD + T + ++ +T+A R RE+++
Sbjct: 144 YYQEYRAGVPVTD----VIDLEPTDRHGTTTRFLPDTSIIQT-LDYNFDTLAQRFREMSY 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITI 121
LN L E ++ E N ++F GG+ YV+ LN +K LH + + VD + +
Sbjct: 199 LNKGLRFKFVDERTNRELN----FYFEGGIVSYVRHLNKEKTVLHRQPFYVERIVDDVMV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D + +AN+I DGG+H+ G + +LTR +N+ + +KD + +L+
Sbjct: 255 EVALQYTDSFDTDNVYTFANNINNADGGSHLSGFRTALTRVINNYARAKGLLKDNESNLT 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXX 241
G+ VREGLT +ISV++ +P+F QTK +L +PE V + + +L+ +P
Sbjct: 315 GDDVREGLTAVISVKLKDPQFSSQTKEKLVSPEAASAVATVFSDAFSAWLDENPTEARRI 374
Query: 242 XXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
R KS + SLPGKLADCS P E++IVEGDSAGG+
Sbjct: 375 IEKAISAARTRLAVQKVRETAR-KSAMEGFSLPGKLADCSDPNPARCELYIVEGDSAGGT 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILNVE+ M N E++ LI A+G + G+ F LRYH
Sbjct: 434 AKQGRDRRFQAILPLRGKILNVEKSRLDRMLSNAEVRALITAIGTSI-GDQFDLSKLRYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+I ++TDADVDG+HIRTLLLTFF+R+ + L G +++ PPLY+++ G++ Y Y DAE
Sbjct: 493 RIFLMTDADVDGSHIRTLLLTFFFRHMRPLITNGHLFIAQPPLYRIKHGREQVYTYSDAE 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
S P IQR+KGLGEM QLWETT+NP+ R++ Q+ +EDAA A+ F+ L
Sbjct: 553 RDAYLSKLPPGTKVEIQRYKGLGEMNAEQLWETTMNPQNRVILQVTLEDAARADETFTML 612
Query: 482 MGARVDTRKELIQNAAN-LVNLD 503
MG V R+ IQ AN +V LD
Sbjct: 613 MGDLVPPRRRFIQTHANEVVELD 635
>UNIPROTKB|Q89W70 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 EMBL:BA000040
GenomeReviews:BA000040_GR GO:GO:0003918 SUPFAM:SSF56719
HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939 HSSP:P06982
RefSeq:NP_767463.1 ProteinModelPortal:Q89W70 SMR:Q89W70
GeneID:1047796 KEGG:bja:bll0823 PATRIC:21185152
BioCyc:BJAP224911:GJEJ-831-MONOMER Uniprot:Q89W70
Length = 811
Score = 867 (310.3 bits), Expect = 5.9e-101, Sum P(2) = 5.9e-101
Identities = 190/423 (44%), Positives = 259/423 (61%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E++ +++ G V L V+ D+ ++GT + F F I++D T+ R+RELA
Sbjct: 155 EHYIEFAHGDAVAPL---VVVGDAPGKRGTEVTFLASPDTFKN-IEYDFATLEHRLRELA 210
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGIT 120
FLN + IAL EK + E ++GG+EE+V++L+ +KK + + R + +GI
Sbjct: 211 FLNSGVNIALSDMRHAVEKRE--EMHYSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGIG 268
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
++ AL W +D+Y + +L + N+I DGGTH+ G + +LTR +N G K + I+L
Sbjct: 269 VEAALWW-NDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVN--GYAEANAKKEKIAL 325
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXX 240
+G+ REGLT ++SV+VP+P+F QTK +L + EVR VV+ + E L + E HP
Sbjct: 326 TGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALQAWFEEHPSEAKM 385
Query: 241 XXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
R KS L SSLPGKLADC P +SE+FIVEGDSAGG
Sbjct: 386 IVGKVIQAAAAREAARKARELTR-KSPLSVSSLPGKLADCQEKDPAKSELFIVEGDSAGG 444
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGR+R FQA+LPLRGKILNVER M +E+I LI ALG G+ E F E LRY
Sbjct: 445 SAKQGRNREFQAVLPLRGKILNVERVRPDKMLGSEQIGTLITALGTGISDE-FSIEKLRY 503
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKII++TDADVDGAHIRTLLLTFFYR + + D G +Y+ PPLYKV RGK QY D+
Sbjct: 504 HKIIVMTDADVDGAHIRTLLLTFFYRQMRDIIDGGYLYIAQPPLYKVSRGKSEQYLKDER 563
Query: 421 ELK 423
L+
Sbjct: 564 ALE 566
Score = 154 (59.3 bits), Expect = 5.9e-101, Sum P(2) = 5.9e-101
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 436 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQN 495
++QR+KGLGEM P QLWETTL+ R L Q+ +++ EA+ +F+ LMG V+ R++ IQ
Sbjct: 743 TLQRYKGLGEMNPEQLWETTLDTNARSLLQVKVKEVDEADDIFTKLMGDVVEPRRDFIQE 802
Query: 496 AANLVNLD 503
+ +D
Sbjct: 803 HSLSATID 810
>TIGR_CMR|BA_3657 [details] [associations]
symbol:BA_3657 "DNA topoisomerase IV, B subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005740 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
HOGENOM:HOG000075154 KO:K02622 OMA:TDGTGLH ProtClustDB:PRK05559
TIGRFAMs:TIGR01058 HSSP:P06982 RefSeq:NP_845922.1
RefSeq:YP_020292.2 RefSeq:YP_029649.1 ProteinModelPortal:Q81Y98
IntAct:Q81Y98 DNASU:1085976 EnsemblBacteria:EBBACT00000013021
EnsemblBacteria:EBBACT00000015630 EnsemblBacteria:EBBACT00000022573
GeneID:1085976 GeneID:2818281 GeneID:2850873 KEGG:ban:BA_3657
KEGG:bar:GBAA_3657 KEGG:bat:BAS3392
BioCyc:BANT260799:GJAJ-3454-MONOMER
BioCyc:BANT261594:GJ7F-3563-MONOMER Uniprot:Q81Y98
Length = 654
Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
Identities = 211/501 (42%), Positives = 304/501 (60%)
Query: 3 YHQKYSRGK-PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
Y Q++ G PVTTL + GT + F PD +F+T +++ T+ R+RE A
Sbjct: 142 YEQRFENGGVPVTTLE----KIGKTKESGTTMHFKPDTTIFSTT-NYNYETLCERLRESA 196
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FL + I+++ E +D E + + + G+E +V +LN +K +H VV F + +GI
Sbjct: 197 FLLKGMKISIKDERNDLE----DVFHYETGIEAFVSYLNEEKDSIHPVVYFTGEQNGIEA 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+LA Q+ +D YS+ +L + N++RT DGGTH G K ++TR N +K +K+KD +L
Sbjct: 253 ELAFQF-NDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVALLKEKDKNLE 311
Query: 182 GEHVREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXX 239
G +REG+ I+SVRVP +FEGQTK +LG E R +D V E+L +LE +PDV
Sbjct: 312 GTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFLEENPDVAT 371
Query: 240 XXXXXXXXXXXXXXXXXXXXXXVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
R +K +L GKL S P+++E+++VEGDS
Sbjct: 372 LLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQKNELYLVEGDS 431
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQA+LPLRGK++N E+ A ++KNEEI +I A+G GV G +F E
Sbjct: 432 AGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGV-GNEFDVED 490
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ----V 413
+ Y K++I+TDAD DGAHI+ LLLTFFYRY K L + G +++ +PPLYKV +GK +
Sbjct: 491 INYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVI 550
Query: 414 QYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
+Y + D EL V Y +QR+KGLGEM QLWETT+NPE R L ++ I+DAA
Sbjct: 551 EYAWSDEELDSVTKKVGKG--YMLQRYKGLGEMNADQLWETTMNPETRTLIRVKIDDAAR 608
Query: 474 ANVVFSSLMGARVDTRKELIQ 494
A ++LMG +V+ R++ I+
Sbjct: 609 AERRVTTLMGDKVEPRRKWIE 629
>UNIPROTKB|P0C5C5 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:1773
"Mycobacterium tuberculosis" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737
GO:GO:0040007 GO:GO:0005618 GO:GO:0005694 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0000287
EMBL:BX842572 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 EMBL:L27512 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF
ProtClustDB:PRK05644 PIR:S44198 RefSeq:NP_214519.1
RefSeq:NP_334414.1 RefSeq:YP_006513317.1 PDB:2ZJT PDB:3IG0 PDB:3M4I
PDBsum:2ZJT PDBsum:3IG0 PDBsum:3M4I ProteinModelPortal:P0C5C5
SMR:P0C5C5 PRIDE:P0C5C5 EnsemblBacteria:EBMYCT00000001058
EnsemblBacteria:EBMYCT00000070955 GeneID:13315978 GeneID:887081
GeneID:922435 KEGG:mtc:MT0005 KEGG:mtu:Rv0005 KEGG:mtv:RVBD_0005
PATRIC:18121734 TubercuList:Rv0005 HOGENOM:HOG000075154
BindingDB:P0C5C5 ChEMBL:CHEMBL3489 EvolutionaryTrace:P0C5C5
Uniprot:P0C5C5
Length = 675
Score = 910 (325.4 bits), Expect = 7.5e-101, Sum P(2) = 7.5e-101
Identities = 192/447 (42%), Positives = 274/447 (61%)
Query: 65 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDL 123
PK E + P K + + + GGL ++V+ +N K +H +V F G +++
Sbjct: 230 PKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEI 289
Query: 124 ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGE 183
A+QW + YS+++ +AN+I T +GGTH EG +++LT +N K K +KDKD +L+G+
Sbjct: 290 AMQW-NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGD 348
Query: 184 HVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXX 243
+REGL +ISV+V P+FEGQTKT+LGN EV+ V + E LT + E +P
Sbjct: 349 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVN 408
Query: 244 XXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAK 303
VR+KS LPGKLADC ST P +SE+++VEGDSAGGSAK
Sbjct: 409 KAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 468
Query: 304 QGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKI 363
GRD FQAILPLRGKI+NVE+ + KN E+Q +I ALG G+ E F LRYHKI
Sbjct: 469 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDE-FDIGKLRYHKI 527
Query: 364 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE-RGKQVQYCYDDAE- 421
+++ DADVDG HI TLLLT +R+ + L + G +++ PPLYK++ + ++ Y D E
Sbjct: 528 VLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRER 587
Query: 422 ---LKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
L+ +K+ N IQR+KGLGEM +LWETT++P R+L+Q+ ++DAA A+ +
Sbjct: 588 DGLLEAGLKAGKKINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 647
Query: 478 FSSLMGARVDTRKELI-QNAANLVNLD 503
FS LMG VD R+ I +NA ++ LD
Sbjct: 648 FSILMGEDVDARRSFITRNAKDVRFLD 674
Score = 110 (43.8 bits), Expect = 7.5e-101, Sum P(2) = 7.5e-101
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 28 RQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKE 74
+ G+ +RFW D VF T ++D T+A R++E+AFLN LTI L E
Sbjct: 166 KTGSTVRFWADPAVFETT-EYDFETVARRLQEMAFLNKGLTINLTDE 211
>UNIPROTKB|Q59192 [details] [associations]
symbol:parE "DNA topoisomerase 4 subunit B" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005740 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 HOGENOM:HOG000075154 EMBL:Z73234
EMBL:AF024713 PIR:C69637 RefSeq:NP_389691.2
ProteinModelPortal:Q59192 SMR:Q59192
EnsemblBacteria:EBBACT00000000468 GeneID:936151 KEGG:bsu:BSU18090
PATRIC:18975449 GenoList:BSU18090 KO:K02622 OMA:TDGTGLH
ProtClustDB:PRK05559 BioCyc:BSUB:BSU18090-MONOMER BindingDB:Q59192
ChEMBL:CHEMBL3485 HAMAP:MF_00939 TIGRFAMs:TIGR01058 Uniprot:Q59192
Length = 655
Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
Identities = 215/505 (42%), Positives = 302/505 (59%)
Query: 3 YHQKYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
Y Q++ G KPVT+L + + GT F PD +F+T ++ T++ R+RE A
Sbjct: 143 YQQRFENGGKPVTSLE----KIGKTKKTGTLTHFKPDPTMFSTTT-YNFETLSERLRESA 197
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FL L I L E +D Q +++ G+E +V +LN +K L +VV F + I +
Sbjct: 198 FLLKGLKIELIDERND----QREVFYYENGIEAFVAYLNEEKDVLSEVVSFEGEHHSIEV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D A Q+ +D YS+ +L + N++RT DGGTH G K ++TR N +K +K+KD +L
Sbjct: 254 DFAFQF-NDGYSENILSFVNNVRTKDGGTHESGAKTAMTRAFNEYARKVALLKEKDKNLE 312
Query: 182 GEHVREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXX 239
G +REGL+ IISVR+P +FEGQTK +LG E R VD V E L +LE + D
Sbjct: 313 GTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVDAIVSEQLAYFLEENRDTAT 372
Query: 240 XXXXXXXXXXXXXXXXXXXXXXVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
R +K ++L GKL S P ++E+++VEGDS
Sbjct: 373 LLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDS 432
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQA+LPLRGK++N E+ A ++KNEEI +I A+G GV G DF +
Sbjct: 433 AGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGV-GADFSIDD 491
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG---KQV- 413
+ Y KIII+TDAD DGAHI+ LLLTFFYRY K L + G +++ +PPLYKV +G K++
Sbjct: 492 INYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEII 551
Query: 414 QYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
+Y + D E+ V Y+IQR+KGLGEM QLWETT+NPE R L ++ I+DAA
Sbjct: 552 EYAWSDEEMGDVLKKVGKG--YTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAAR 609
Query: 474 ANVVFSSLMGARVDTRKELIQ-NAA 497
++LMG +V+ R++ I+ N A
Sbjct: 610 VERRVTTLMGDKVEPRRKWIEKNVA 634
>TIGR_CMR|NSE_0721 [details] [associations]
symbol:NSE_0721 "DNA gyrase, B subunit" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_506597.1 ProteinModelPortal:Q2GD49
SMR:Q2GD49 STRING:Q2GD49 GeneID:3932056 KEGG:nse:NSE_0721
PATRIC:22681457 BioCyc:NSEN222891:GHFU-733-MONOMER Uniprot:Q2GD49
Length = 783
Score = 832 (297.9 bits), Expect = 1.6e-98, Sum P(2) = 1.6e-98
Identities = 174/421 (41%), Positives = 258/421 (61%)
Query: 6 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 65
++ G+ V +L+ + + D+ GT + F P + F + +T+ R REL+FLNP
Sbjct: 144 EFENGETVRSLS---VTGECGDKTGTLVHFLPSRSTFKNTTEVSFSTLENRFRELSFLNP 200
Query: 66 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITIDLA 124
L I+L + +F +GG EE+V +L+ K+P+H + VD I ID++
Sbjct: 201 GLRISLLDMRKGSSTGKV-VFFSSGGTEEFVAYLDRSKQPIHSTPIRVVGGVDSIAIDVS 259
Query: 125 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 184
+QW +D+Y + +L + N+I+ DGGTH+ +++++TR +++ K +K + +SGE
Sbjct: 260 MQW-NDSYYENVLCFTNNIKQKDGGTHLAALRSAMTRVMHNYIVKENLIKKDKVVVSGED 318
Query: 185 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXX 244
VREGL+ I+SV++P+P+F QTK +L + EV+ V+++ V + L +LE +P
Sbjct: 319 VREGLSAILSVKLPDPKFSSQTKEKLISSEVKPVIEKIVSDALASWLEENPSSARVIARK 378
Query: 245 XXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 304
R+K L ++LPGKLADC +PE SE+ IVEGDSAGGSAKQ
Sbjct: 379 VVESALAREAAKKARDLTRRKGGLEITTLPGKLADCQEKSPELSELLIVEGDSAGGSAKQ 438
Query: 305 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 364
GRDR+ QA+LPLRGKILNVE+ + + EI NLI ALG + E+F + +RYHKII
Sbjct: 439 GRDRKTQAVLPLRGKILNVEKTRFHKVIGSAEIGNLIAALGTSIGEEEFNIDKIRYHKII 498
Query: 365 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVER-GKQVQYCYDDAELK 423
I+TDADVDG HIRTLLLTFF+RY + + + G +Y+ PLYKV R G V Y DDA L+
Sbjct: 499 IMTDADVDGLHIRTLLLTFFFRYARPIVERGYLYIAQTPLYKVMRKGADV-YLRDDAALE 557
Query: 424 K 424
+
Sbjct: 558 E 558
Score = 166 (63.5 bits), Expect = 1.6e-98, Sum P(2) = 1.6e-98
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 437 IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKE-LIQN 495
+QRFKGLGEM P QLW TTL+P R + ++ IE+AA A+ + S LMG V R++ ++ N
Sbjct: 715 LQRFKGLGEMNPEQLWSTTLDPSNRTIFKVTIEEAAVADQMCSMLMGDAVGPRRDFIVNN 774
Query: 496 AANLVNLD 503
A N N+D
Sbjct: 775 ALNASNID 782
Score = 38 (18.4 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 173 VKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLG-NPEVRKVVDQSVQEYLTEY 230
+ + D + V +GL +VR + G T G + V +VVD SV E L Y
Sbjct: 1 MSNTDYTADSIKVLKGLE---AVRKRPGMYIGDTDDGSGLHQMVYEVVDNSVDESLAGY 56
>UNIPROTKB|Q9RVW5 [details] [associations]
symbol:DR_0906 "DNA gyrase, subunit B" species:243230
"Deinococcus radiodurans R1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE000513
GenomeReviews:AE000513_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075154 HSSP:P06982 PIR:A75461
RefSeq:NP_294630.1 ProteinModelPortal:Q9RVW5 SMR:Q9RVW5
GeneID:1799432 KEGG:dra:DR_0906 PATRIC:21629376
BioCyc:DRAD243230:GH46-1277-MONOMER Uniprot:Q9RVW5
Length = 663
Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
Identities = 219/516 (42%), Positives = 304/516 (58%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKD-RQGTRIRFWPDKQVFTTAI-QFDHNTIAGRIREL 60
+H ++ RG V L VL KD + T++ F PD +F QFD+ I R+REL
Sbjct: 149 HHIRFERGVLVQPL--EVLGATPKDVKWSTKVSFHPDPTIFKEFDNQFDYLRIRNRLREL 206
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFF--AGGLEEYVQWLNTDK-KPLHDV-VGFRKDV 116
A+L L I +R E ++ + E F GG+ + + L TD K L+D V R
Sbjct: 207 AYLTG-LKIVIRDERTELHGGEIKEEVFHEKGGIANFARALVTDDTKLLYDQPVVMRGTH 265
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
+ +++A + SD +L YAN IRT DGGT + G K + TR LN K +K
Sbjct: 266 AEVEVEVAFIHANTYASDNILTYANMIRTRDGGTPLTGFKTAYTRVLNKYAKDKNLIKAG 325
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
+ SG+ + EG+ C++SV+V +P+FE Q K +L N E + V+ V E ++LE +P
Sbjct: 326 NPVPSGDDLLEGIYCVVSVKVGDPQFESQAKVKLLNSEAQTAVNAIVGEKFAQFLEENPK 385
Query: 237 VXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
+ VR+ + L + LPGKLADCSS P ESE+FIVEG+
Sbjct: 386 IGKTIVEKAAEAARARDAARKARDIVRRSNPLENDDLPGKLADCSSQDPAESELFIVEGN 445
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGV--KGED-- 352
SAGGSAK GR+RRFQAILPLRGKILNVE+ + + KN EI++LI A+G G KGE+
Sbjct: 446 SAGGSAKGGRERRFQAILPLRGKILNVEKAELNKILKNAEIRSLIGAIGAGFDGKGEEMR 505
Query: 353 FKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ 412
F E LRYHKI+I+TDAD+DG HI TLLLTFF+R+ + + ++G +Y+ PPLYK+ G Q
Sbjct: 506 FDLENLRYHKIVIMTDADMDGGHITTLLLTFFFRFMRPIVEQGHLYIAQPPLYKITVGAQ 565
Query: 413 VQ-----YCYDDAELKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQL 466
+ Y + + ELK+ V + + Y IQRFKGLGEM QLWETT+NPE R+LK++
Sbjct: 566 TKNNKGVYLFTNEELKEHVADAVKAGKKYEIQRFKGLGEMNAEQLWETTMNPETRVLKRV 625
Query: 467 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNL 502
I+D AN +F +LMG+ V RK+ I+ A +
Sbjct: 626 SIDDLIIANEIFDALMGSEVAPRKDFIRENARFAEI 661
>TIGR_CMR|APH_0716 [details] [associations]
symbol:APH_0716 "DNA gyrase, B subunit" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_505297.1 ProteinModelPortal:Q2GK04 SMR:Q2GK04
STRING:Q2GK04 GeneID:3930586 KEGG:aph:APH_0716 PATRIC:20950116
BioCyc:APHA212042:GHPM-734-MONOMER Uniprot:Q2GK04
Length = 793
Score = 804 (288.1 bits), Expect = 8.8e-96, Sum P(2) = 8.8e-96
Identities = 174/427 (40%), Positives = 255/427 (59%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY ++ GK V L + + +++GT +RF P VF+ F ++T+ RIREL+
Sbjct: 139 EYFMRFEEGKAVAPLK---MVGECGNKKGTCVRFMPSSDVFSFT-DFSYSTLENRIRELS 194
Query: 62 FLNPKLTIALRKEDSDP--EKNQYNEYFFAG-GLEEYVQWLNTDKKPLHDVVGFRKDVDG 118
FLN ++I+L+ P E N N A G+ +V++L+ +K P+ V+ + G
Sbjct: 195 FLNSNVSISLKDLRESPVLESNFGNVSDAATKGVSLFVEYLDRNKTPVTPVITLSGIMSG 254
Query: 119 ITIDLALQWC-SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
I + + C +D+Y + ML + N+IR +GGTH+ G +++LTR +N+ +K
Sbjct: 255 YEISVEVSMCWNDSYYENMLCFTNNIRQREGGTHLAGFRSALTRCVNNYATNEGYLKKAK 314
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+S+ GE VREGLTC++S+++P+P F QTK +L + E R VV+ + E L+ E +P +
Sbjct: 315 VSIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVESIMFEKLSSIFETNPKL 374
Query: 238 XXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
++ + L +S+PGKLADC +PE SE+FIVEG+S
Sbjct: 375 AMSVVERVIRSAKGREAARKAREVIKSRGTLDFTSIPGKLADCQEKSPELSELFIVEGNS 434
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALG--LGVKGEDFKK 355
AGGSAKQGRDRR QA+L LRGKILNVER + EI +LI A+G +G+ D K
Sbjct: 435 AGGSAKQGRDRRCQAVLSLRGKILNVERVGLDRTLSSSEITSLIMAIGSNIGIGSFDISK 494
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
+RYHKIII+TDADVDG+HIRTLLLTFF+RY + L D G +Y+ PPLYK+ + K+ Y
Sbjct: 495 --VRYHKIIIMTDADVDGSHIRTLLLTFFFRYMRELIDAGYLYIAQPPLYKLTKHKKDTY 552
Query: 416 CYDDAEL 422
+D L
Sbjct: 553 IKNDEAL 559
Score = 168 (64.2 bits), Expect = 8.8e-96, Sum P(2) = 8.8e-96
Identities = 35/69 (50%), Positives = 48/69 (69%)
Query: 436 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQN 495
++QRFKGLGEM QLW+TTLNP+ R L ++ I DA A+ +FS LMG V+ R++ I N
Sbjct: 724 ALQRFKGLGEMNADQLWDTTLNPQTRTLLKVKIADAEAADAIFSVLMGDFVEPRRDFINN 783
Query: 496 -AANLVNLD 503
A + N+D
Sbjct: 784 NALKVQNID 792
>TIGR_CMR|ECH_0620 [details] [associations]
symbol:ECH_0620 "DNA gyrase, B subunit" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_507430.1 ProteinModelPortal:Q2GGK3
STRING:Q2GGK3 GeneID:3927738 KEGG:ech:ECH_0620 PATRIC:20576692
BioCyc:ECHA205920:GJNR-622-MONOMER Uniprot:Q2GGK3
Length = 798
Score = 784 (281.0 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
Identities = 167/429 (38%), Positives = 261/429 (60%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY ++ G V +L+ + ++ ++GT+I F P K +F++ I F ++T+ RIREL+
Sbjct: 139 EYFMRFEDGITVKSLS---VVGENTTKKGTKITFLPSKNIFSS-INFSYSTLENRIRELS 194
Query: 62 FLNPKLTIALRKE------DSD---PEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF 112
FLN + + L+ +S + ++ N+ G +V++L+ +K + VV
Sbjct: 195 FLNSNINMNLKDLRGAQILNSSFGLKDNSKVND-IEDRGTAAFVKYLDRNKTAVTKVVHI 253
Query: 113 RKDV--DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKS 170
V GI+++L++ W +D+Y + ML + N+IR DGGTH+ G ++++TR +N+
Sbjct: 254 EGIVLEHGISLELSMHW-NDSYYENMLCFTNNIRQKDGGTHLAGFRSAMTRCINNYATNE 312
Query: 171 KTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEY 230
+K +++ GE VREGLTC++++++P+P+F QTK +L + E R V+ V E LT
Sbjct: 313 GFLKKAKVNILGEDVREGLTCVLAIKLPDPKFSSQTKDKLVSSEARTAVENIVYEKLTNI 372
Query: 231 LELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEI 290
E +P + ++ K+ + LPGKLADC +PE SE+
Sbjct: 373 FETNPKLATSIIERIIRSAKGREAARRARDLIKSKNGFDFTILPGKLADCQEKSPELSEL 432
Query: 291 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG 350
FIVEG+SAGGSAKQGRDRR QA+L L+GKILNVER + + EI +LI A+G +
Sbjct: 433 FIVEGNSAGGSAKQGRDRRSQAVLSLKGKILNVERASLDRILSSAEIASLITAIGSNIGT 492
Query: 351 EDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG 410
E+F E +RYHK+II+TDADVDG+HIRTLLLTFF+RY + + ++G +Y+ PPLYKV +
Sbjct: 493 ENFDIEKVRYHKVIIMTDADVDGSHIRTLLLTFFFRYMREVIEKGYLYIAQPPLYKVTKH 552
Query: 411 KQVQYCYDD 419
K+ Y +D
Sbjct: 553 KKEFYIKND 561
Score = 172 (65.6 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
Identities = 36/69 (52%), Positives = 48/69 (69%)
Query: 436 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQN 495
++QRFKGLGEM QLW+TTLNPE R L ++ I D A+ +FS LMG V+ R++ I N
Sbjct: 729 TLQRFKGLGEMNADQLWDTTLNPETRTLLKIKIADCEAADSIFSVLMGDFVEPRRDFINN 788
Query: 496 -AANLVNLD 503
A N+ N+D
Sbjct: 789 NALNVQNID 797
>UNIPROTKB|O67137 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224324 "Aquifex
aeolicus VF5" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE000657
GenomeReviews:AE000657_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 PIR:F70388
RefSeq:NP_213700.1 ProteinModelPortal:O67137 SMR:O67137
PRIDE:O67137 GeneID:1193771 KEGG:aae:aq_1026 PATRIC:20959360
OMA:IFETTEF ProtClustDB:PRK14939 BioCyc:AAEO224324:GJBH-733-MONOMER
Uniprot:O67137
Length = 792
Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
Identities = 209/507 (41%), Positives = 310/507 (61%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF-TTAIQFDHNTIAGRIRELA 61
Y + RG+ V L HV+ ++K R GT++ F PD ++F TT I+FD + R+RELA
Sbjct: 147 YRMAFKRGEVVEPL--HVVG-ETKKR-GTKVSFKPDPEIFETTEIKFD--IVEKRVRELA 200
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
+LNP++ L +D ++ Y F G+EE V++LN K+PL D++ + + +G+
Sbjct: 201 YLNPEVKFEL----TDERLGKHLIYKFDRGIEELVKYLNEGKEPLFKDIIRIQGEKEGVI 256
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+D+A Q+ D Y + + + N+I+T++GGTH+ G ++ L++ + + + K K+ S
Sbjct: 257 VDIAFQYVKD-YKERIESFVNNIKTVEGGTHVTGFRSGLSKAVIRMAQGLKLAKELKKSF 315
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXX 240
+GE VREGLT +++ +VPNP+FEGQTKT+LGN V+++V+ ++LT Y E DV
Sbjct: 316 TGEDVREGLTAVVACKVPNPQFEGQTKTKLGNQNVKQIVESITYDFLTSYFEKKRDVLKA 375
Query: 241 XXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
VR+KS L LPGKLADCS T P + EIF+VEGDSAGG
Sbjct: 376 IVEKAIEAALAREAAKKAKELVRRKSPLEEGVLPGKLADCSETDPSKCEIFLVEGDSAGG 435
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQ RDRR+QAILPLRGKI+NVE+ + N+EI+ ++ ALG G+ GED + LRY
Sbjct: 436 SAKQARDRRYQAILPLRGKIINVEKARIDKVLSNDEIKAIVSALGCGI-GEDLDLKKLRY 494
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKII++TDADVDG+HIRTLLLTFFYR+ L +EG +Y+ PPLY+V++GK+ Y DD
Sbjct: 495 HKIILMTDADVDGSHIRTLLLTFFYRFMPKLVEEGYVYIAEPPLYRVKKGKKEIYIKDDK 554
Query: 421 ELKK--VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
E + + L + + GE + V+L L + + LV + E N+V
Sbjct: 555 EFEHFLLNEIREKGRLVDAREKEFKGEEL-VRLL-IDLKDYEDAYRALV-KSKGE-NLV- 609
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHL 505
+ L+ RV R+E ++N A + + HL
Sbjct: 610 NFLLTHRV--REEDLRNPARVKEITHL 634
Score = 200 (75.5 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 40/71 (56%), Positives = 54/71 (76%)
Query: 437 IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNA 496
+QR+KGLGEM P QLWETT+NP+ R LK++ IEDAAEA+ +F+ LMG +V+ R+E I+
Sbjct: 724 VQRYKGLGEMNPEQLWETTMNPKTRRLKKVKIEDAAEADRIFTILMGEQVEPRREFIEAY 783
Query: 497 ANLVNLDHLDI 507
A V HLD+
Sbjct: 784 AKEVK--HLDV 792
>UNIPROTKB|P35886 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 GenomeReviews:AL645882_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 EMBL:L27063
EMBL:AL939118 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644
HOGENOM:HOG000075154 RefSeq:NP_628061.1 ProteinModelPortal:P35886
GeneID:1099310 KEGG:sco:SCO3874 PATRIC:23737532 Uniprot:P35886
Length = 686
Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
Identities = 209/522 (40%), Positives = 314/522 (60%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF-TTAIQFDHNTIAGRIRELAFL 63
Q+Y G P +L H ++ + GT + FW D +F TT F+ + +
Sbjct: 170 QEYKLGVPTASLARH----EATEETGTTVTFWADGDIFETTDYSFETLSRRFQEMAFLNK 225
Query: 64 NPKLTIALRKEDS----------DPEKNQYNE--YFFAGGLEEYVQWLNTDKKPL-HD-V 109
K+ + +E + + EK++ Y + GG+ ++V +LN+ K L H V
Sbjct: 226 GLKINLTDERESAKATAGADEAGEDEKHEVKSVSYHYEGGIVDFVTYLNSRKGELVHPTV 285
Query: 110 VGFR-KDVD-GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLG 167
+ +D D +++++A+QW + Y++ + +AN I T +GGTH EG +A+LT +N
Sbjct: 286 IDLEAEDKDKSLSLEVAMQW-NGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYA 344
Query: 168 KKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYL 227
+ K +++KD +L+G+ +REGLT IISV++ P+FEGQTKT+LGN EV+ V + V E+L
Sbjct: 345 RDKKLLREKDDNLTGDDIREGLTAIISVKLAEPQFEGQTKTKLGNTEVKTFVQKVVYEHL 404
Query: 228 TEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEE 287
T++L+ +P+ R+K +L S+SLPGKL+DC S P +
Sbjct: 405 TDWLDRNPNEAADIIRKGIQAAHARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTK 464
Query: 288 SEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLG 347
EIFIVEGDSAGGSAK GR+ ++QAILP+RGKILNVE+ + +N+EIQ +I A G G
Sbjct: 465 CEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTG 524
Query: 348 VKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKV 407
V EDF E LRYHKII++ DADVDG HI TLLLTF +R+ + L + G +Y+ PPLYK+
Sbjct: 525 VH-EDFDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVESGHVYLSRPPLYKI 583
Query: 408 ERGKQ-VQYCYDDAE----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRM 462
+ G+ +Y Y D E ++ + + S+QRFKGLGEM +L TT++ E R+
Sbjct: 584 KWGRDDFEYAYSDRERDALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRITTMDQEHRV 643
Query: 463 LKQLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 503
L Q+ ++DAA+A+ +FS LMG V+ R+ IQ NA ++ LD
Sbjct: 644 LGQVTLDDAAQADDLFSVLMGEDVEARRAFIQRNAKDVRFLD 685
>UNIPROTKB|Q7RHG3 [details] [associations]
symbol:PY04024 "DNA topoisomerase II, putative"
species:73239 "Plasmodium yoelii yoelii" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 HSSP:P06982 EMBL:AABL01001206 RefSeq:XP_724272.1
ProteinModelPortal:Q7RHG3 STRING:Q7RHG3 GeneID:3789597
KEGG:pyo:PY04024 EuPathDB:PlasmoDB:PY04024 Uniprot:Q7RHG3
Length = 930
Score = 522 (188.8 bits), Expect = 1.8e-91, Sum P(4) = 1.8e-91
Identities = 107/271 (39%), Positives = 174/271 (64%)
Query: 90 GGLEEYVQWLNTDK----KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRT 145
GGL+EY++ L +K K + V+ I +DL L+W ++ Y++ +L + N++ T
Sbjct: 407 GGLDEYMEKLTKNKTNIFKTNNKVISISCFQKNIHVDLKLKWVTNQYNENILSFVNNVNT 466
Query: 146 IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQ 205
IDGGTH++ +K +++R++N KK++T+K+ +++ GE++REGLT I+S+++ NPEFEGQ
Sbjct: 467 IDGGTHVDAMKYAISRSINYNVKKNETIKNF-VNIPGEYIREGLTAILSIKMNNPEFEGQ 525
Query: 206 TKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQK 265
TKT+LG+ ++ +++ + E L+E + P++ +R K
Sbjct: 526 TKTKLGSYYLKPILESIIFEKLSEIFDFEPNLLNTIYLKALQAKKSDEEAKAARDLIRSK 585
Query: 266 S-VLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVE 324
+ S+ LPGKL DC S ++EIFIVEGDSA GSAKQ R+R QAILPL+GKILNVE
Sbjct: 586 NNQYYSTILPGKLVDCISDDISKNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVE 645
Query: 325 R-KDEAAMYKNEEIQNLIRALGLGVKGEDFK 354
+ K+ +++N E+++LI A+GL V ++ K
Sbjct: 646 KIKNNKKIFENIELKSLITAIGLNVNYDNSK 676
Score = 190 (71.9 bits), Expect = 1.8e-91, Sum P(4) = 1.8e-91
Identities = 39/77 (50%), Positives = 49/77 (63%)
Query: 348 VKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKV 407
+K +F +LRY KIII+TDADVDG HI LLLTF YR+QK + + G +YV PPLYKV
Sbjct: 691 IKKNNFIDTSLRYGKIIIMTDADVDGEHICILLLTFLYRFQKEIIENGNVYVACPPLYKV 750
Query: 408 ERGKQVQYCYDDAELKK 424
K D+ + K
Sbjct: 751 TYNKFFDNNIKDSVISK 767
Score = 168 (64.2 bits), Expect = 1.8e-91, Sum P(4) = 1.8e-91
Identities = 34/71 (47%), Positives = 51/71 (71%)
Query: 429 FPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDT 488
F S+ Y IQRFKGLGEMM QLW TT++P+ R L ++ + DA +AN + +SLMG +
Sbjct: 859 FSSSKKYEIQRFKGLGEMMADQLWSTTMDPQVRKLIRVTVSDAIKANNLINSLMGEDSKS 918
Query: 489 RKE-LIQNAAN 498
RK+ +I+N+++
Sbjct: 919 RKDFIIKNSSS 929
Score = 105 (42.0 bits), Expect = 1.8e-91, Sum P(4) = 1.8e-91
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ + +GK V L P+ ++GT+I + PD +F T I+ + I R+ +LA+
Sbjct: 304 YNIELEKGKVVKELNVQDCPIK---KRGTQIHYKPDNTIFKTNIKHNSEFIKNRLHQLAY 360
Query: 63 LNPKLTIALRKEDSDPEKN 81
LN KLT E + + N
Sbjct: 361 LNDKLTFYFYDERNSNKGN 379
Score = 46 (21.3 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
Identities = 22/85 (25%), Positives = 39/85 (45%)
Query: 100 NTDKKPLHDVVGFRKDVDGITIDLALQWCSDA----YSDTMLGYANSIRTIDGGTHIEGV 155
NTD K LH ++ F + VD + C+ ++D + ++ R I H +
Sbjct: 137 NTDSKGLHQIL-F-EIVDNAVDEYNNHECNQIKVIIHNDESITIEDNGRGIPCDIHEKTK 194
Query: 156 KASLTRTLNSLGKKSKTVKDKDISL 180
K++L L L +K + D DI++
Sbjct: 195 KSALETVLTVLHSGAKFLDD-DINM 218
>TIGR_CMR|CJE_0003 [details] [associations]
symbol:CJE_0003 "DNA gyrase, B subunit" species:195099
"Campylobacter jejuni RM1221" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000025
GenomeReviews:CP000025_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_178032.1 ProteinModelPortal:Q5HXF3 STRING:Q5HXF3
GeneID:3230659 KEGG:cjr:CJE0003 PATRIC:20041695
BioCyc:CJEJ195099:GJC0-3-MONOMER Uniprot:Q5HXF3
Length = 769
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 186/422 (44%), Positives = 263/422 (62%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++S GK ++ + + GT I FWPD Q+F +FD+ +A R RELA+
Sbjct: 140 YRQEFSEGKVISEFGV----IGKSKKTGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAY 194
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LNPK+TI + D ++ + F GG+ ++V LN K+ L + F D + + ++
Sbjct: 195 LNPKITINFK----DNRVGKHESFHFEGGISQFVIDLNK-KEALTKAIFFSVDEEDVNVE 249
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+AL + +D YS+ +L + N+I+T DGGTH G + LTR +++ + + + ++KD ++G
Sbjct: 250 VALLY-NDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITG 308
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXX 242
E VREGL ++SV+VP P+FEGQTK +LG+ VR +V ++ EYLT+Y E +P
Sbjct: 309 EDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIM 368
Query: 243 XXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
R+K L +LPGKLADC S P ESEI++VEGDSAGGSA
Sbjct: 369 NKVLMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSA 428
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQGR+R FQAILPLRGKILNVE+ + K+E+IQN+I A G G+ GEDF LRYHK
Sbjct: 429 KQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGI-GEDFDLSKLRYHK 487
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
III+TDADVDG+HI+TLLLTFF+R+ L G IY+ PPLY ++ K+ Y D+ L
Sbjct: 488 IIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKAL 547
Query: 423 KK 424
+
Sbjct: 548 SE 549
Score = 183 (69.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 64/205 (31%), Positives = 103/205 (50%)
Query: 307 DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKI--I 364
++RF I +R I N NEE+ ++I+ L +G + + ++I
Sbjct: 587 EKRFNVISVIRYMIEN----SNLVKGNNEELFSVIKQF-LETQGHNILNHYINENEIRAF 641
Query: 365 ILTDADVDGAHIRTLLLTF-FYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE-L 422
+ T ++ I L T Y +FD+ K +RG +++ D E L
Sbjct: 642 VQTQNGLEELVINEELFTHPLYEEANYIFDK----------IK-DRG--LEFDKDILEVL 688
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
+ V+++ A +IQR+KGLGEM P QLWETT++P R L ++ IEDA AN F+ M
Sbjct: 689 EDVETNAKKGA--TIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746
Query: 483 GARVDTRKELIQNAANLVNLDHLDI 507
G V+ R++ IQ A+ ++ HLD+
Sbjct: 747 GDEVEPRRDYIQ--AHAKDVKHLDV 769
>GENEDB_PFALCIPARUM|PFL1915w [details] [associations]
symbol:PFL1915w "dna gyrase subunit b, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=IDA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:AE014188 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0020011 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 HOGENOM:HOG000075156
GenomeReviews:AE014188_GR HSSP:P06982 RefSeq:XP_001350789.1
ProteinModelPortal:Q8I528 IntAct:Q8I528 MINT:MINT-1670662
PRIDE:Q8I528 EnsemblProtists:PFL1915w:mRNA GeneID:811435
KEGG:pfa:PFL1915w EuPathDB:PlasmoDB:PF3D7_1239500 OMA:YDERSEN
ProtClustDB:PTZ00109 Uniprot:Q8I528
Length = 1006
Score = 503 (182.1 bits), Expect = 1.4e-87, Sum P(4) = 1.4e-87
Identities = 105/264 (39%), Positives = 166/264 (62%)
Query: 91 GLEEYVQWLNTDKKPL---HD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTI 146
GL EY+ + +K L +D ++ I IDL ++W S+ Y++ ++ + N++ T
Sbjct: 465 GLNEYITNITKNKTNLFKDNDKIISISCYHKNIYIDLRMKWLSNQYNENIISFVNNVNTT 524
Query: 147 DGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQT 206
DGGTH++ +K +++R +N KK++ +K+ +++ GE++REGLT I+SV++ NPEFEGQT
Sbjct: 525 DGGTHVDALKYAVSRCVNYNIKKNEMIKNF-VNIPGEYIREGLTAILSVKMNNPEFEGQT 583
Query: 207 KTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKS 266
KT+LG+ ++ +++ + E L+E + P++ +R K+
Sbjct: 584 KTKLGSHHLKSILESVIFEKLSEIFDFEPNLLSSIYFKALQAKLSDEEAKAARDLIRSKN 643
Query: 267 VLRSSS-LPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVER 325
SS+ LPGKL DC S +EIFIVEGDSA GSAKQ R+R QAILPL+GKILNVE+
Sbjct: 644 NQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEK 703
Query: 326 -KDEAAMYKNEEIQNLIRALGLGV 348
K+ +++N E+++LI ALGL V
Sbjct: 704 IKNNKRIFENSELKSLITALGLNV 727
Score = 193 (73.0 bits), Expect = 1.4e-87, Sum P(4) = 1.4e-87
Identities = 43/95 (45%), Positives = 56/95 (58%)
Query: 317 RGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHI 376
+GK N ++K + + E QN L K + LRY K+II+TDADVDG HI
Sbjct: 745 KGK--NSKKKSDLKNSRFESTQNNNNILNK--KKDILVDNTLRYGKVIIMTDADVDGEHI 800
Query: 377 RTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK 411
R LLLTF YR+QK + + G +YV PPLYK+ K
Sbjct: 801 RILLLTFLYRFQKEIIENGNVYVACPPLYKITYNK 835
Score = 149 (57.5 bits), Expect = 1.4e-87, Sum P(4) = 1.4e-87
Identities = 32/64 (50%), Positives = 38/64 (59%)
Query: 435 YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 494
Y IQRFKGLGEMM QLW TT++P R L ++ + DA AN + SLMG RK I
Sbjct: 939 YEIQRFKGLGEMMADQLWNTTMDPTVRKLIRVTVNDAIRANDLIFSLMGEDSKLRKNFIL 998
Query: 495 NAAN 498
N
Sbjct: 999 ENTN 1002
Score = 109 (43.4 bits), Expect = 1.4e-87, Sum P(4) = 1.4e-87
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y + +GK LT P++ ++GT+I + PD +F ++ + + + I RI +LA+
Sbjct: 307 YSIELEKGKVTKELTITNCPIN---KRGTQIHYKPDSSIFKSSTKHNSDLIKNRIHQLAY 363
Query: 63 LNPKLTIALRKEDSDPEKNQY 83
LN KLT E S+ + + Y
Sbjct: 364 LNEKLTFYFYDERSENKNSIY 384
Score = 38 (18.4 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 404 LYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFK 441
+ VE+ K + ++++ELK + ++ N Y + K
Sbjct: 698 ILNVEKIKNNKRIFENSELKSLITALGLNVNYDNKNLK 735
Score = 37 (18.1 bits), Expect = 1.6e-21, Sum P(3) = 1.6e-21
Identities = 28/132 (21%), Positives = 48/132 (36%)
Query: 100 NTDKKPLHDVVGFRKDVDGITIDLALQWCSDA----YSDTMLGYANSIRTIDGGTHIEGV 155
NTD K LH ++ F + +D + C+ + D + ++ R I H +
Sbjct: 147 NTDVKGLHQIL-F-EIIDNSVDEYNNFECNTIKVVIHKDDSVTIEDNGRGIPCDVHEKTK 204
Query: 156 KASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE 214
K++L L L +K D+ D + G T S + N
Sbjct: 205 KSALETVLTVLHSGAKFFDDEMDDEIDNNMNNTGNTNT-SEKNNRDNISNNNNNNNNNKR 263
Query: 215 VRKVVDQSVQEY 226
+K +S Q+Y
Sbjct: 264 TKKNSKESAQKY 275
>UNIPROTKB|Q8I528 [details] [associations]
symbol:GyrB "Term=DNA gyrase subunit B;evidence=inferred
from direct assay" species:36329 "Plasmodium falciparum 3D7"
[GO:0020011 "apicoplast" evidence=IDA] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE014188
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0020011
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 HOGENOM:HOG000075156 GenomeReviews:AE014188_GR
HSSP:P06982 RefSeq:XP_001350789.1 ProteinModelPortal:Q8I528
IntAct:Q8I528 MINT:MINT-1670662 PRIDE:Q8I528
EnsemblProtists:PFL1915w:mRNA GeneID:811435 KEGG:pfa:PFL1915w
EuPathDB:PlasmoDB:PF3D7_1239500 OMA:YDERSEN ProtClustDB:PTZ00109
Uniprot:Q8I528
Length = 1006
Score = 503 (182.1 bits), Expect = 1.4e-87, Sum P(4) = 1.4e-87
Identities = 105/264 (39%), Positives = 166/264 (62%)
Query: 91 GLEEYVQWLNTDKKPL---HD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTI 146
GL EY+ + +K L +D ++ I IDL ++W S+ Y++ ++ + N++ T
Sbjct: 465 GLNEYITNITKNKTNLFKDNDKIISISCYHKNIYIDLRMKWLSNQYNENIISFVNNVNTT 524
Query: 147 DGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQT 206
DGGTH++ +K +++R +N KK++ +K+ +++ GE++REGLT I+SV++ NPEFEGQT
Sbjct: 525 DGGTHVDALKYAVSRCVNYNIKKNEMIKNF-VNIPGEYIREGLTAILSVKMNNPEFEGQT 583
Query: 207 KTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKS 266
KT+LG+ ++ +++ + E L+E + P++ +R K+
Sbjct: 584 KTKLGSHHLKSILESVIFEKLSEIFDFEPNLLSSIYFKALQAKLSDEEAKAARDLIRSKN 643
Query: 267 VLRSSS-LPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVER 325
SS+ LPGKL DC S +EIFIVEGDSA GSAKQ R+R QAILPL+GKILNVE+
Sbjct: 644 NQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEK 703
Query: 326 -KDEAAMYKNEEIQNLIRALGLGV 348
K+ +++N E+++LI ALGL V
Sbjct: 704 IKNNKRIFENSELKSLITALGLNV 727
Score = 193 (73.0 bits), Expect = 1.4e-87, Sum P(4) = 1.4e-87
Identities = 43/95 (45%), Positives = 56/95 (58%)
Query: 317 RGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHI 376
+GK N ++K + + E QN L K + LRY K+II+TDADVDG HI
Sbjct: 745 KGK--NSKKKSDLKNSRFESTQNNNNILNK--KKDILVDNTLRYGKVIIMTDADVDGEHI 800
Query: 377 RTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK 411
R LLLTF YR+QK + + G +YV PPLYK+ K
Sbjct: 801 RILLLTFLYRFQKEIIENGNVYVACPPLYKITYNK 835
Score = 149 (57.5 bits), Expect = 1.4e-87, Sum P(4) = 1.4e-87
Identities = 32/64 (50%), Positives = 38/64 (59%)
Query: 435 YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 494
Y IQRFKGLGEMM QLW TT++P R L ++ + DA AN + SLMG RK I
Sbjct: 939 YEIQRFKGLGEMMADQLWNTTMDPTVRKLIRVTVNDAIRANDLIFSLMGEDSKLRKNFIL 998
Query: 495 NAAN 498
N
Sbjct: 999 ENTN 1002
Score = 109 (43.4 bits), Expect = 1.4e-87, Sum P(4) = 1.4e-87
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y + +GK LT P++ ++GT+I + PD +F ++ + + + I RI +LA+
Sbjct: 307 YSIELEKGKVTKELTITNCPIN---KRGTQIHYKPDSSIFKSSTKHNSDLIKNRIHQLAY 363
Query: 63 LNPKLTIALRKEDSDPEKNQY 83
LN KLT E S+ + + Y
Sbjct: 364 LNEKLTFYFYDERSENKNSIY 384
Score = 38 (18.4 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 404 LYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFK 441
+ VE+ K + ++++ELK + ++ N Y + K
Sbjct: 698 ILNVEKIKNNKRIFENSELKSLITALGLNVNYDNKNLK 735
Score = 37 (18.1 bits), Expect = 1.6e-21, Sum P(3) = 1.6e-21
Identities = 28/132 (21%), Positives = 48/132 (36%)
Query: 100 NTDKKPLHDVVGFRKDVDGITIDLALQWCSDA----YSDTMLGYANSIRTIDGGTHIEGV 155
NTD K LH ++ F + +D + C+ + D + ++ R I H +
Sbjct: 147 NTDVKGLHQIL-F-EIIDNSVDEYNNFECNTIKVVIHKDDSVTIEDNGRGIPCDVHEKTK 204
Query: 156 KASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE 214
K++L L L +K D+ D + G T S + N
Sbjct: 205 KSALETVLTVLHSGAKFFDDEMDDEIDNNMNNTGNTNT-SEKNNRDNISNNNNNNNNNKR 263
Query: 215 VRKVVDQSVQEY 226
+K +S Q+Y
Sbjct: 264 TKKNSKESAQKY 275
>UNIPROTKB|O69998 [details] [associations]
symbol:O69998 "Putative DNA gyrase subunit B"
species:100226 "Streptomyces coelicolor A3(2)" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 GenomeReviews:AL645882_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 HOGENOM:HOG000075154 ProtClustDB:PRK05559
HSSP:P06982 EMBL:AL939125 PIR:T35196 RefSeq:NP_629945.1
ProteinModelPortal:O69998 GeneID:1101264 KEGG:sco:SCO5822
PATRIC:23741544 OMA:DSEMIIS Uniprot:O69998
Length = 707
Score = 704 (252.9 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
Identities = 159/399 (39%), Positives = 229/399 (57%)
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+D+AL+W Y T+ + N I T GGTH+ G + ++ +T+N + + K ++ + +
Sbjct: 310 VDVALRW-GTGYDTTVRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRTKKMLRVAEDDI 368
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYL-ELHPDVXX 239
+ EGLT +++VR+ P+FEGQTK LG R++V+ + L +L D
Sbjct: 369 VKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNNVISRELKAFLTSTKRDAAQ 428
Query: 240 XXXXXXXXXXXXXXXXXXXXX---XVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
R+K+ L SSSLP KLADC S + SE+FIVEGD
Sbjct: 429 QARVVMEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGD 488
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SA G+AK R+ FQA+LP+RGKILNV++ M KN E +I+ +G G G F +
Sbjct: 489 SALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAG-SGRTFDID 547
Query: 357 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE--RGKQVQ 414
A RY KII++TDADVDG+HIRTLLLT F+RY + + + G ++ VPPL+++E + K+ Q
Sbjct: 548 AARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQ 607
Query: 415 ----YCYDDAELKKVKSSFPS-NALY--SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLV 467
Y Y D EL+ F S N Y SIQR+KGLGEM QL ETT++P +R L+++
Sbjct: 608 DKYVYTYSDRELRDKLMEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPRRRTLRRIN 667
Query: 468 IEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLD 506
+ D A VF LMG V RKE I ++A ++ +D
Sbjct: 668 LTDLDSAEQVFDLLMGNDVAPRKEFISSSAATLDRSRID 706
Score = 142 (55.0 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
Identities = 32/89 (35%), Positives = 50/89 (56%)
Query: 26 KDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDS--DPEKNQY 83
K R+GTR+R+W D+Q+F + + + R R+ AFL P LTI +R E D
Sbjct: 193 KSRRGTRVRYWADRQIFLKDAKLSLDNLHQRARQTAFLVPGLTIVVRDEFGLGDGGSKGE 252
Query: 84 NEYFFAGGLEEYVQWLNTDKKPLHDVVGF 112
+ F GG+ E+ ++L D+ P+ DV+ F
Sbjct: 253 ESFRFDGGISEFCEFLAGDR-PVCDVLRF 280
>UNIPROTKB|Q89M38 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
EMBL:BA000040 GenomeReviews:BA000040_GR GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 OMA:GFIQSYC TIGRFAMs:TIGR01055 HSSP:P06982
RefSeq:NP_770995.1 ProteinModelPortal:Q89M38 GeneID:1052126
KEGG:bja:bll4355 PATRIC:21192268
BioCyc:BJAP224911:GJEJ-4381-MONOMER Uniprot:Q89M38
Length = 681
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 193/519 (37%), Positives = 285/519 (54%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y + RG P L + +++ R+GTR+RF PD +F F + R A+
Sbjct: 174 YRMTFERGHPKGKLE-DLGKINN--RRGTRVRFKPDTDIFGAKAAFKPQRLFKMTRSKAY 230
Query: 63 LNPKLTIA-------LRKEDSDPEKNQYNEYFFAGGLEEYVQW-LNTDKKPLHDVVGFRK 114
L + I L+ D P + ++ F GGL++Y+ ++ D D+ +
Sbjct: 231 LFGGVEIRWNCAPELLKGIDDVPAEATFH---FPGGLKDYLAAAIHADTLVHPDIFSGKS 287
Query: 115 DVDGI--TIDLALQWCSDAYSDTMLG-YANSIRTIDGGTHIEGVKASLTRTLNSLGKKSK 171
+G + A+ W +DA D L Y N++ T DGGTH G++++L R L ++
Sbjct: 288 GRNGAHGACEWAVAWTADA--DGFLSSYTNTVPTPDGGTHESGLRSALLRGLKDHAERVG 345
Query: 172 TVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYL 231
K + S++ E V G ++SV V PEF+GQTK RL E +++V+Q++++ +L
Sbjct: 346 QGK-RASSITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAEAQRIVEQAMKDPFDHWL 404
Query: 232 ELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIF 291
+P+ R K+ + LPGKLADCS E SE+F
Sbjct: 405 SGNPNQANKLLDFVIDRAEERLRRRQEKETAR-KTAGKKLRLPGKLADCSDAGTEGSELF 463
Query: 292 IVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGE 351
IVEGDSAGGSAKQ RDR+ QA+LPLRGKILNV + + N ++ +L++A+G G +
Sbjct: 464 IVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASAGKDKLTANAQLSDLVQAIGCGTLAQ 523
Query: 352 DFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK 411
+++E LRY +III+TDADVDGAHI +LL+TFFYR L DEG +++ VPPLYK+ G
Sbjct: 524 -YREEDLRYQRIIIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLFLAVPPLYKLTHGS 582
Query: 412 QVQYCYDDAELKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQR-MLKQLVIE 469
+ Y DDA + +KS F +NA + RFKGLGEMMP QL ETT++P +R MLK +++
Sbjct: 583 KSVYARDDAHKEALIKSEFNANAKVEVNRFKGLGEMMPAQLKETTMDPAKRTMLKVVLLA 642
Query: 470 DAAEANV-VFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
D + LMG + + R I + A N D LD+
Sbjct: 643 DDRDTTADSVERLMGTKAEARFAFISDKAEFANEDLLDV 681
>UNIPROTKB|A6VD80 [details] [associations]
symbol:parE "DNA topoisomerase IV, B subunit"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005737 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 RefSeq:YP_001351015.1
ProteinModelPortal:A6VD80 SMR:A6VD80 STRING:A6VD80 GeneID:5355906
KEGG:pap:PSPA7_5696 PATRIC:19832877 OMA:QARDKEF
BioCyc:PAER381754:GHMY-5702-MONOMER Uniprot:A6VD80
Length = 629
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 166/508 (32%), Positives = 257/508 (50%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY ++ G T L V+ + GT + FWPD + F +A +F + + ++ A
Sbjct: 135 EYRMTFADGFKDTDL--EVIGTVGRRNTGTSVHFWPDPKYFDSA-KFSVSRLKHVLKAKA 191
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGI-- 119
L P L++ D + E+ F GL Y+ + L D F +++G
Sbjct: 192 VLCPGLSVVFE----DKNTGERVEWHFEDGLRSYLTDAVAELPRLPDEP-FCGNLEGSKE 246
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+ AL W + Y N I T GGTH+ G++ L + + + + + +
Sbjct: 247 AVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCE-FRNLLPRGVK 305
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXX 239
L+ E V E + ++S+++ P+F GQTK RL + E V V++ + +L H ++
Sbjct: 306 LAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAFSLWLNEHAEIGL 365
Query: 240 XXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
V +K + + +LPGKLADC+ P +E+F+VEGDSAG
Sbjct: 366 QLAELAISNAGRRLKAGKK---VERKKITQGPALPGKLADCAGQEPMRAELFLVEGDSAG 422
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQ RD+ FQAI+PLRGKILN D + ++E+ ++ A+G+ D + LR
Sbjct: 423 GSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAVAIGVDPGASDLAQ--LR 480
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
Y KI IL DAD DG HI TLL F R+ + L + G +YV +PPLY+++ GK + Y D+
Sbjct: 481 YGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPPLYRIDLGKDIYYALDE 540
Query: 420 AE----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
AE L+++ + + RFKGLGEM P+QL ETT++P R L QL +EDA
Sbjct: 541 AERDGILERLAAE-KKRGKPQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTLEDATGTL 599
Query: 476 VVFSSLMGA-RVDTRKELIQNAANLVNL 502
+ L+ R RK +++ NL +
Sbjct: 600 EIMDMLLAKKRAGDRKSWLESKGNLAEV 627
>TIGR_CMR|SPO_1253 [details] [associations]
symbol:SPO_1253 "DNA topoisomerase IV, B subunit"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000031 GenomeReviews:CP000031_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 OMA:GFIQSYC TIGRFAMs:TIGR01055
RefSeq:YP_166498.1 ProteinModelPortal:Q5LU07 GeneID:3192730
KEGG:sil:SPO1253 PATRIC:23375809 Uniprot:Q5LU07
Length = 652
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 172/516 (33%), Positives = 272/516 (52%)
Query: 3 YHQKYSRGKPVTTLT-CHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
Y Q++SRG P+ + P +R+GT + F D+++F +F + IR A
Sbjct: 150 YEQRFSRGLPLGPIQQIGAAP----NRRGTTVTFHADEEIFGHH-RFKPARLFKSIRSKA 204
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWL----NT-DKKPLHDVVGFRK-- 114
+L + I + D E + F GGL +Y++ +T ++P V F +
Sbjct: 205 YLFSGVEIRWKSAIDDGETPTEATFHFPGGLADYLKETLGKASTYAEQPFAGTVDFTEKF 264
Query: 115 DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK 174
+ G ++ A+ W + + + Y N++ T +GGTH G +++ + + + G+ K
Sbjct: 265 NTPG-KVEWAINW-TPSRDGFIQSYCNTVPTPEGGTHEAGFWSAILKGIRAYGELISNKK 322
Query: 175 DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELH 234
I+ + + G ++S + PEF GQTK RL E +++V+ +V+++ +L
Sbjct: 323 AAQITR--DDLLTGGCALVSCFIREPEFVGQTKDRLATVEAQRLVEGAVRDHFDNWLAAD 380
Query: 235 PDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVE 294
++K+ + LPGKL DCS+T+ E +E+FIVE
Sbjct: 381 TK-SAGAILDFLVLRAEERIRRRQEKETQRKTATKKLRLPGKLVDCSATSREGTELFIVE 439
Query: 295 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 354
GDSAGGSAK RDR+ QA+LPLRGKILNV + + N+EI +L +ALG+G+ G F
Sbjct: 440 GDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKLGSNQEISDLTQALGVGL-GTRFN 498
Query: 355 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY KIII+TDADVDGAHI LL+TFF+ + + D G +Y+ PPLY++ +G +
Sbjct: 499 VDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDTGHLYLACPPLYRLTQGAKRV 558
Query: 415 YCYDDAELKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED--A 471
YC D+AE + + + RFKGLGEM L +TT+NPE R L ++ I++
Sbjct: 559 YCLDEAERDEWLAKGLGGKGKIDVSRFKGLGEMDAKDLKDTTMNPETRKLIRVTIDEDEP 618
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
E + LMG + + R + IQ A V + LD+
Sbjct: 619 GETGDLVERLMGKKPELRFQYIQENARFV--EELDV 652
>TIGR_CMR|SO_3899 [details] [associations]
symbol:SO_3899 "DNA topoisomerase IV, B subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 HSSP:P06982 OMA:QARDKEF
RefSeq:NP_719430.1 ProteinModelPortal:Q8EAK3 SMR:Q8EAK3
GeneID:1171539 KEGG:son:SO_3899 PATRIC:23527480 Uniprot:Q8EAK3
Length = 628
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 163/480 (33%), Positives = 250/480 (52%)
Query: 30 GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA 89
GTR+ FWPD F + F ++ + +R A L P L I + + N+ +E+++
Sbjct: 162 GTRVHFWPDTSYFDSP-NFSNSKLIYLLRAKAVLCPGLRIKFTNKHT----NEVHEWYYE 216
Query: 90 GGLEEYVQWLNTDK--KPLHDVVG-FRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTI 146
GL +Y++ D P +G F+ ++ D A+ W + Y N I T
Sbjct: 217 SGLTDYLKAAVGDNIMLPEEPFIGSFKGQIEAA--DWAITWLPEGGESINESYVNLIPTP 274
Query: 147 DGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQT 206
GGTH+ G + L ++ + + + I LS E + + I+SV++ +P+F GQT
Sbjct: 275 LGGTHVNGFRQGLLESMREFCEFRNLIP-RGIKLSPEDIWDRAAFILSVKMQDPQFAGQT 333
Query: 207 KTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKS 266
K +L + + V V++ + +L + ++ V +K
Sbjct: 334 KEKLSSRQSSAFVSGIVRDAFSLWLNSNTELAESLAEMCINNAQKRLKAAKK---VARKK 390
Query: 267 VLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERK 326
V +LPGKL DCS P E+F+VEGDSAGGSAKQ RDR FQAI+PLRGKILN
Sbjct: 391 VTSGPALPGKLTDCSGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEV 450
Query: 327 DEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYR 386
D + + ++E+ ++ A+G D + LRY KI IL DAD DG HI TLL F +
Sbjct: 451 DASQVLASQEVHDISVAIGCDPDSNDISE--LRYGKICILADADSDGLHIATLLCALFLK 508
Query: 387 YQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPS-NALYSIQ--RFKGL 443
+ + L ++G +Y+ +PPL++++ GK V Y DDAE + V + N +Q RFKGL
Sbjct: 509 HYRVLVEQGHVYIAMPPLFRIDIGKDVYYALDDAEKEGVLDRINAENKKGKVQVTRFKGL 568
Query: 444 GEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA-RVDTRKELIQNAANLVNL 502
GEM P+QL ETT++P R L QL I+DA E + + L+ R RK +++ ++ L
Sbjct: 569 GEMNPLQLRETTMDPNTRRLVQLTIDDAEETDSLMDMLLAKKRSPDRKNWLEDKGDMAVL 628
>UNIPROTKB|Q9KPD9 [details] [associations]
symbol:VC_2431 "Topoisomerase IV, subunit B" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0007059 "chromosome
segregation" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005737 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 HSSP:P06982 OMA:GNVCVAR
PIR:G82078 RefSeq:NP_232061.1 ProteinModelPortal:Q9KPD9 SMR:Q9KPD9
DNASU:2612973 GeneID:2612973 KEGG:vch:VC2431 PATRIC:20083881
GO:GO:0009340 Uniprot:Q9KPD9
Length = 626
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 167/505 (33%), Positives = 252/505 (49%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y + G VT LT V + GT + FWPD + F + F + + +R A
Sbjct: 137 YEIAFEHGDKVTELT--VTGTCGRRNTGTSVHFWPDTKYFDSP-NFSVSRLINNLRAKAV 193
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQW--LNTDKKPLHDVVG-FRKDVDGI 119
L P L I +D N + + + GL++Y+ P G F +
Sbjct: 194 LCPGLEIIF----TDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQTEAA 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
T A+ W + Y N I T GGTH+ G++ L + + + + + +
Sbjct: 250 T--WAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCE-FRNLLPRGVK 306
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXX 239
L+GE V + ++S+++ +P+F GQTK RL + + V V++ + +L P +
Sbjct: 307 LTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAE 366
Query: 240 XXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
VR+K + +LPGKL DC+ +E+F+VEGDSAG
Sbjct: 367 QLAEVCIANAHSRMRASKKV--VRKK-IASGPALPGKLTDCTVQDLNRTELFLVEGDSAG 423
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQ RDR FQA++PLRGKILN + ++E+ ++ ALG+ ++ EALR
Sbjct: 424 GSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDSDNL--EALR 481
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
Y K+ IL DAD DG HI TLL F R+ + L G +YV +PPLY+++ GK+V Y DD
Sbjct: 482 YGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDD 541
Query: 420 AELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
E + V A ++QRFKGLGEM P+QL ETT++P R L QL I+DA + +
Sbjct: 542 QEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMM 601
Query: 479 SSLMGA-RVDTRKELIQNAANLVNL 502
L+G R D R+ +Q ++ +
Sbjct: 602 DMLLGKKRADDRRAWLQRNGDMAEV 626
>TIGR_CMR|VC_2431 [details] [associations]
symbol:VC_2431 "topoisomerase IV, subunit B" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0007059 "chromosome segregation" evidence=ISS]
[GO:0009340 "DNA topoisomerase IV complex" evidence=ISS]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
Gene3D:3.40.50.670 KO:K02622 ProtClustDB:PRK05559
TIGRFAMs:TIGR01055 HSSP:P06982 OMA:GNVCVAR PIR:G82078
RefSeq:NP_232061.1 ProteinModelPortal:Q9KPD9 SMR:Q9KPD9
DNASU:2612973 GeneID:2612973 KEGG:vch:VC2431 PATRIC:20083881
GO:GO:0009340 Uniprot:Q9KPD9
Length = 626
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 167/505 (33%), Positives = 252/505 (49%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y + G VT LT V + GT + FWPD + F + F + + +R A
Sbjct: 137 YEIAFEHGDKVTELT--VTGTCGRRNTGTSVHFWPDTKYFDSP-NFSVSRLINNLRAKAV 193
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQW--LNTDKKPLHDVVG-FRKDVDGI 119
L P L I +D N + + + GL++Y+ P G F +
Sbjct: 194 LCPGLEIIF----TDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQTEAA 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
T A+ W + Y N I T GGTH+ G++ L + + + + + +
Sbjct: 250 T--WAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCE-FRNLLPRGVK 306
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXX 239
L+GE V + ++S+++ +P+F GQTK RL + + V V++ + +L P +
Sbjct: 307 LTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAE 366
Query: 240 XXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
VR+K + +LPGKL DC+ +E+F+VEGDSAG
Sbjct: 367 QLAEVCIANAHSRMRASKKV--VRKK-IASGPALPGKLTDCTVQDLNRTELFLVEGDSAG 423
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQ RDR FQA++PLRGKILN + ++E+ ++ ALG+ ++ EALR
Sbjct: 424 GSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDSDNL--EALR 481
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
Y K+ IL DAD DG HI TLL F R+ + L G +YV +PPLY+++ GK+V Y DD
Sbjct: 482 YGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDD 541
Query: 420 AELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
E + V A ++QRFKGLGEM P+QL ETT++P R L QL I+DA + +
Sbjct: 542 QEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMM 601
Query: 479 SSLMGA-RVDTRKELIQNAANLVNL 502
L+G R D R+ +Q ++ +
Sbjct: 602 DMLLGKKRADDRRAWLQRNGDMAEV 626
>TIGR_CMR|CBU_0064 [details] [associations]
symbol:CBU_0064 "DNA topoisomerase IV, B subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 RefSeq:NP_819117.2
ProteinModelPortal:Q83F84 PRIDE:Q83F84 GeneID:1207934
KEGG:cbu:CBU_0064 PATRIC:17928803 OMA:GNVCVAR
BioCyc:CBUR227377:GJ7S-66-MONOMER Uniprot:Q83F84
Length = 641
Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
Identities = 169/511 (33%), Positives = 264/511 (51%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDS--KDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
Y ++ G+ + L PV S K GT I FWPD F + ++F + + +R
Sbjct: 148 YQMDFAHGEKTSKLR----PVGSCNKSESGTSIHFWPDSHYFDS-VKFGVSALKHTMRAK 202
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV--VG-FRKDVD 117
A L P LT+ E++ Q ++++A GL+ Y+ D++ L + VG F + +
Sbjct: 203 AVLCPGLTVHFIDENT----GQRLQWYYAEGLKTYLADSLRDRERLPEEPWVGSFSGETE 258
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
D AL W + Y N I T GGTH+ G++ L + + K + ++
Sbjct: 259 --KADWALAWLPEDDEGIRESYVNLIPTPQGGTHVNGLRTGLLEAMREFCEIHKLLP-RN 315
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+ L+ E + E ++SV++ P+F GQTK RL + + V V++ + +L + ++
Sbjct: 316 LKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQSAVFVSGVVKDAFSLWLNHNVEI 375
Query: 238 XXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+ +K V +LPGKLADC + P + E+F+VEGDS
Sbjct: 376 GKTLAELVIANAQKRLRMSKK---IERKKVTTGPALPGKLADCILSDPMQCELFLVEGDS 432
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQ RD+ FQAI+PLRGKILN D + ++ + ++ A+ +GV + E
Sbjct: 433 AGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQTVHDI--AIAIGVDPDSSNLEG 490
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRY KI IL DAD DG HI TLL F ++ L G +YV +PPLY+++ GK V Y
Sbjct: 491 LRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHVYVAMPPLYRIDVGKDVFYAL 550
Query: 418 DDAE----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
D+ E L ++K+ A+ +IQRFKGLGEM P QL ETT+NP+ R L +L ++ +
Sbjct: 551 DEEEKEGVLDRIKAEKLKGAI-NIQRFKGLGEMNPSQLRETTMNPDTRHLVRLTVKSKDK 609
Query: 474 ANVVFSSLMGA-RVDTRKELIQNAANLVNLD 503
+ L+ R R++ ++ NL ++
Sbjct: 610 TEQLLDMLLAKKRAADRRDWLEKKGNLAEVE 640
>TAIR|locus:2146658 [details] [associations]
symbol:GYRB3 "DNA GYRASE B3" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0003916 "DNA topoisomerase
activity" evidence=IGI] InterPro:IPR001005 InterPro:IPR001241
InterPro:IPR013506 Pfam:PF00204 SMART:SM00433 SMART:SM00717
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005694
GO:GO:0007059 GO:GO:0003682 GO:GO:0006261 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 eggNOG:COG0187 KO:K02470 EMBL:AY074291
EMBL:AY091322 EMBL:AY519549 IPI:IPI00536772 RefSeq:NP_196031.2
UniGene:At.33174 ProteinModelPortal:Q8VY11 SMR:Q8VY11
EnsemblPlants:AT5G04110.1 GeneID:830289 KEGG:ath:AT5G04110
TAIR:At5g04110 InParanoid:Q8VY11 Genevestigator:Q8VY11
Uniprot:Q8VY11
Length = 546
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 138/252 (54%), Positives = 170/252 (67%)
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
L ++T++L ED+DP K EY +A GL E+V WLN DKKPLHDV+GFRK+++G TI+
Sbjct: 17 LRVQITVSLEMEDNDPNK----EYLYAKGLSEFVTWLNADKKPLHDVLGFRKEINGTTIN 72
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+ALQWC D YS+ +LGYAN IRT+DGGT+I+GVKAS+TRTLNSL +KSK V+DKDI +
Sbjct: 73 IALQWCVDGYSNKILGYANGIRTMDGGTYIDGVKASITRTLNSLVEKSKLVEDKDIIFTE 132
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXX 242
EHV EGLTCI+SV VP PEFEGQT+ RLGNP VR++VDQSVQE L E ELHPDV
Sbjct: 133 EHVMEGLTCIVSVIVPKPEFEGQTQ-RLGNPNVREIVDQSVQECLMESFELHPDVFESIM 191
Query: 243 XXXXXXXXXXXXXXXXXXXVRQKSVLRS---SSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+SV S+P KL + SS T SE FI G S+G
Sbjct: 192 SKSYNAYKTDLAVKRARDVYSSESVAMVCAIESIPMKLTNSSSET---SETFIGRGVSSG 248
Query: 300 GSAKQGRDRRFQ 311
G+AK DR F+
Sbjct: 249 GAAKHDSDRCFK 260
>UNIPROTKB|P20083 [details] [associations]
symbol:parE species:83333 "Escherichia coli K-12"
[GO:0030541 "plasmid partitioning" evidence=IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0007062 "sister
chromatid cohesion" evidence=IMP] [GO:0005694 "chromosome"
evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0046677
"response to antibiotic" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046677 GO:GO:0006261 EMBL:U28377
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0007062 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880
HOGENOM:HOG000075154 GO:GO:0030541 KO:K02622 ProtClustDB:PRK05559
EMBL:M58409 EMBL:L22026 PIR:D65090 RefSeq:NP_417502.1
RefSeq:YP_491222.1 PDB:1S14 PDB:1S16 PDB:3FV5 PDBsum:1S14
PDBsum:1S16 PDBsum:3FV5 ProteinModelPortal:P20083 SMR:P20083
DIP:DIP-10441N IntAct:P20083 MINT:MINT-1223307 PRIDE:P20083
EnsemblBacteria:EBESCT00000001166 EnsemblBacteria:EBESCT00000016957
GeneID:12933399 GeneID:947501 KEGG:ecj:Y75_p2956 KEGG:eco:b3030
PATRIC:32121470 EchoBASE:EB0681 EcoGene:EG10687 OMA:GFIQSYC
BioCyc:EcoCyc:EG10687-MONOMER BioCyc:ECOL316407:JW2998-MONOMER
BindingDB:P20083 EvolutionaryTrace:P20083 Genevestigator:P20083
HAMAP:MF_00938 TIGRFAMs:TIGR01055 Uniprot:P20083
Length = 630
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 163/506 (32%), Positives = 256/506 (50%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ + G+ V L V+ K GT + FWPD+ F + +F + + ++ A
Sbjct: 137 YNIAFENGEKVQDL--QVVGTCGKRNTGTSVHFWPDETFFDSP-RFSVSRLTHVLKAKAV 193
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT-DKKPLHDVVGFRKDVDGITI 121
L P + I + E ++ E+ + L E V L T +KP + F D + +
Sbjct: 194 LCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPF--IGNFAGDTEAV-- 249
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D AL W + Y N I T+ GGTH+ G++ L + + + + + + LS
Sbjct: 250 DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY-RNILPRGVKLS 308
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXX 241
E + + ++SV++ +P+F GQTK RL + + V V++ L L+ +V
Sbjct: 309 AEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI--LWLNQNVQAAE 366
Query: 242 XXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
VR+K + +LPGKLADC++ +E+F+VEGDSAGGS
Sbjct: 367 LLAEMAISSAQRRMRAAKKVVRKK-LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGS 425
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQ RDR +QAI+PL+GKILN + ++E+ ++ A+G+ +D + LRY
Sbjct: 426 AKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQ--LRYG 483
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI IL DAD DG HI TLL F ++ + L G +YV +PPLY+++ GK+V Y + E
Sbjct: 484 KICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEE 543
Query: 422 LKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI--EDAAEANVVF 478
+ V ++QRFKGLGEM P+QL ETTL+P R L QL I ED + +
Sbjct: 544 KEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMM 603
Query: 479 SSLMGA-RVDTRKELIQNAANLVNLD 503
L+ R + R+ +Q ++ ++
Sbjct: 604 DMLLAKKRSEDRRNWLQEKGDMAEIE 629
>UNIPROTKB|Q3KL33 [details] [associations]
symbol:gyrB_2 "DNA gyrase subunit B" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 EMBL:CP000051
GenomeReviews:CP000051_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
HOGENOM:HOG000075156 ProtClustDB:PRK05559 RefSeq:YP_328487.1
ProteinModelPortal:Q3KL33 STRING:Q3KL33 GeneID:3687725
KEGG:cta:CTA_0718 PATRIC:32023360 OMA:VFESQTK
BioCyc:CTRA315277:GI4C-739-MONOMER Uniprot:Q3KL33
Length = 605
Score = 418 (152.2 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 118/388 (30%), Positives = 185/388 (47%)
Query: 122 DLALQWC-SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
DLA + ++ S+ + N T DGGTH+ K + + +N K+
Sbjct: 234 DLAFLFSHTETSSEQYFSFVNGQETTDGGTHLVAFKEGIVKGVNEFFGKN---------F 284
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXX 240
S + +REGL I++++ +P FE QTK +LGN +R + + V+E + L+ +P
Sbjct: 285 SSQDIREGLAGCIAIKIASPIFESQTKNKLGNTNIRAELAKRVKEAVLSSLKKNPSSAER 344
Query: 241 XXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADC------SSTTPEESEIFIVE 294
++ K +P KL DC +S + S IFI E
Sbjct: 345 IQEKIKLNEKTRKNAQFLKQELKDKQKKLHYKIP-KLRDCKFHLTDNSLYGKNSSIFITE 403
Query: 295 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 354
G+SA S R+ QA+ LRGK +NV E +YKN+E+ L ALGL +D
Sbjct: 404 GESASASILASRNPLTQAVFSLRGKPMNVFSSKEETIYKNDELFYLTTALGLH---KD-S 459
Query: 355 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY+++I+ TDADVDG HIR L++TFF + L +++ PL+KV
Sbjct: 460 LQNLRYNQVILATDADVDGMHIRNLMITFFLKTFLPLVASNHLFILETPLFKVRHKDATF 519
Query: 415 YCYDDAE-LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
YCY + E L ++ + I RFKGLGE+ P + +++ + + R L + + D
Sbjct: 520 YCYSEEEKLSTIEHIGKKESSLEITRFKGLGEISPKE-FKSFIGADMR-LTPVSLPDTET 577
Query: 474 ANVVFSSLMGARVDTRKE-LIQN-AANL 499
+ + MG RK +I+N NL
Sbjct: 578 LDTLLQFYMGKNTKERKLFIIENLVTNL 605
Score = 70 (29.7 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 25 SKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKE 74
++D GT + F PD ++F F + +IR+ +L+P LTI E
Sbjct: 155 TQDPDGTEVVFSPDHELFEN-FSFQVEFLKKKIRQYTYLHPGLTIIYNGE 203
>UNIPROTKB|Q8A3C1 [details] [associations]
symbol:BT_3033 "DNA topoisomerase IV subunit B"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AE015928
GenomeReviews:AE015928_GR GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075156 KO:K02622
ProtClustDB:PRK05559 HSSP:P06982 OMA:VFESQTK RefSeq:NP_811945.1
ProteinModelPortal:Q8A3C1 GeneID:1074020 KEGG:bth:BT_3033
PATRIC:21061047 BioCyc:BTHE226186:GJXV-3097-MONOMER Uniprot:Q8A3C1
Length = 625
Score = 410 (149.4 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 127/399 (31%), Positives = 184/399 (46%)
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G I++A Y + + N T GGTH K + RT+ K+ D
Sbjct: 243 GEDIEIAFTHTGQ-YGEEYYSFVNGQHTTQGGTHQSAFKEHIARTIKEFFNKNMDYTD-- 299
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE-------VRKVVDQSVQEYLTEY 230
+R GL I+V V P FE QTKT+LG+ V K V ++ + +
Sbjct: 300 -------IRNGLVAAIAVNVEEPIFESQTKTKLGSTNMTPGGVTVNKYVGDFIKLEVDNF 352
Query: 231 LELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPG-KLADCSS--TTP-- 285
L + DV R+++ + ++L KL DC P
Sbjct: 353 LHKNADVAEVMQQKIQESEKERKAIAGVTKLARERA--KKANLHNRKLRDCRIHLNDPKG 410
Query: 286 ----EESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 341
E+S IFI EGDSA GS + RD QA+ LRGK LN + +Y+NEE NL+
Sbjct: 411 KGMEEDSCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLTKKVVYENEEF-NLL 469
Query: 342 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 401
+A L + ED E LRY+K+I+ TDADVDG HIR LL+TFF ++ L +G +Y+
Sbjct: 470 QA-ALNI--ED-GIEGLRYNKVIVATDADVDGMHIRLLLITFFLQFFPDLIKKGHVYILQ 525
Query: 402 PPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQR 461
PL++V K+ YCY + E + N I RFKGLGE+ P + ++ + + R
Sbjct: 526 TPLFRVRNKKKTVYCYSEDERVNAINELSPNP--EITRFKGLGEISPDE-FKHFIGKDMR 582
Query: 462 MLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV 500
L+Q+ + + MG R+ I + NLV
Sbjct: 583 -LEQVTLRKTDAVKELLEFYMGKNTMERQNFIID--NLV 618
Score = 53 (23.7 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
+S+G T +T D+++ GT I F PD +F F I +R +LN
Sbjct: 153 FSKGNLQTDVT-----QDTEEDNGTFIFFEPDNTLFVNYC-FKPEFIETMLRNYTYLNTG 206
Query: 67 LTI 69
L I
Sbjct: 207 LAI 209
>DICTYBASE|DDB_G0279737 [details] [associations]
symbol:top2mt "DNA topoisomerase II" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA;IC;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006261 "DNA-dependent
DNA replication" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 dictyBase:DDB_G0279737 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 EMBL:AAFI02000032 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
EMBL:D82024 PIR:T30577 RefSeq:XP_641531.1 ProteinModelPortal:P90520
STRING:P90520 EnsemblProtists:DDB0214907 GeneID:8622204
KEGG:ddi:DDB_G0279737 OMA:MQDRRER ProtClustDB:PTZ00108
Uniprot:P90520
Length = 1284
Score = 323 (118.8 bits), Expect = 5.0e-26, P = 5.0e-26
Identities = 121/489 (24%), Positives = 211/489 (43%)
Query: 2 EYHQKYS-----RGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIA-- 54
+Y Q++S R +P+ T P+ + T+I F PD + F +D N +
Sbjct: 281 KYFQRWSNNMGDRSEPIIT------PIGEGESDYTKITFKPDLEKFKIKSLWDDNILQLM 334
Query: 55 -GRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFR 113
R+ ++A N +L + L + ++ YN F ++ Y LN K + +R
Sbjct: 335 ERRLYDIAGCNTELMVTL-----NGKRLNYN---FQSYVKLYEHHLNNSTKREDNEEQYR 386
Query: 114 KDVDGITIDLALQW-----CSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGK 168
++ +++ +W S+ T + + NSI T+ GGTH+ + + R + G+
Sbjct: 387 EESFEFG-EISPRWKIGIGLSETGQFTQVSFVNSINTVKGGTHVNFLADQIVRYV---GE 442
Query: 169 KSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGN-PEVRKVVDQSVQEYL 227
K K K D+ + +++ L ++ V NP F+ Q+K L P + + + L
Sbjct: 443 KLKK-KHSDLEIRPMNIKHHLALFVNCLVDNPSFDSQSKETLTTKPMLFGSTPEIPESLL 501
Query: 228 TEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCS---STT 284
++++ + RQ S+ KL D +
Sbjct: 502 AQFVKNSKIIERVAGWALMKQKADLIHSTSG----RQSKTTLIKSI-SKLDDANWAGGLK 556
Query: 285 PEESEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 341
+E + I EGDSA A G R + PLRGK+LNV + NEEI NL
Sbjct: 557 SKECTLIITEGDSAKSLALAGLSVVGRNSYGVFPLRGKLLNVRDVASKQLLSNEEINNLT 616
Query: 342 RALGLGVKGE---DFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIY 398
LGL K D E LRY +++I+ D D DG+HI+ L++ F + + L G +
Sbjct: 617 TILGLSHKNSYDTDESMEDLRYGRVMIMADQDHDGSHIKGLVMNFIHYFWPNLLKRGFLV 676
Query: 399 VGVPPLYKVERGK-QVQYCYDDAELKKVKSSFPSNAL--YSIQRFKGLGEMMPVQLWETT 455
V P+ K + Q + + + +K + + S+ L Y+I+ +KGLG + E
Sbjct: 677 EFVTPIIKATKSSTQKKSFFTIKDYEKWRETISSDQLKQYTIKYYKGLGTSTSAEAKEYF 736
Query: 456 LNPEQRMLK 464
N ++ ++K
Sbjct: 737 SNLDKHVIK 745
>UNIPROTKB|Q8EYL9 [details] [associations]
symbol:LA_4194 "DNA gyrase subunit B" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 EMBL:AE010300 GenomeReviews:AE010300_GR
HSSP:P06786 RefSeq:NP_714374.1 ProteinModelPortal:Q8EYL9
GeneID:1153536 KEGG:lil:LA_4194 PATRIC:22389227
HOGENOM:HOG000040411 OMA:EATIESK ProtClustDB:CLSK575166
BioCyc:LINT189518:GJBB-3320-MONOMER Uniprot:Q8EYL9
Length = 711
Score = 307 (113.1 bits), Expect = 1.3e-24, P = 1.3e-24
Identities = 115/452 (25%), Positives = 204/452 (45%)
Query: 18 CHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNT-IAGRIRELAFLNPKLT--IALRKE 74
C++L D D+ ++ +++ A + DH T + + F N ++ + L K+
Sbjct: 218 CNLLTKDQIDKLSPLLKKTNMQELIEKASKEDHGTSVEFELNPKYFNNLDISFNVDLMKQ 277
Query: 75 D-SDPEKNQYN---EYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKD--VDGITIDLALQW 127
D ++ F G E+Y D+ H D+V ++ D G L L+
Sbjct: 278 YLQDIAMTNPGLEVQFVFKGKKEKYKFKKGLDEIFSHSDLVYYKMDYVAPGSASQLHLET 337
Query: 128 CSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK-DKDISLSGEH-- 184
+ L + NSI GG+ IE ++ R + + KKS+ V +K + S
Sbjct: 338 YLVIGQNKNLTWVNSIFAPQGGSAIEYLE---NRICDEVRKKSQIVALEKKLKTSSTRND 394
Query: 185 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXX 244
VR ++ R+ NP F+ Q K+ L N ++ + + +V ++L ++++
Sbjct: 395 VRNCFHMYVNARLLNPRFKSQDKSYLIN-DLNEDIRNAVDKHLDKFIK-------KTGLL 446
Query: 245 XXXXXXXXXXXXXXXXXVRQKSVLRSS--SLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
QK + ++S ++P + +F+ EGDSA
Sbjct: 447 EEIKLQMEKRTQLKAFEDAQKGLKKASRMNIPKLMPPTGKQGDPGRVLFVAEGDSAIAGL 506
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
+ R+ + + PLRGK LN + A NEE++N++ +GL + + + L Y K
Sbjct: 507 RPARNPKLHGLFPLRGKPLNCKGLSIAKAIANEELKNIVAIVGLPLDQKVKSLDELNYEK 566
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE-----RGKQVQYCY 417
+ I+TDAD DG IR+L+L+FFY Y LF+ G I++ PLY+V+ + K+ +C
Sbjct: 567 VSIITDADFDGYAIRSLMLSFFYEYWPELFELGFIHISSAPLYEVDVKFGDKKKETIFCI 626
Query: 418 DDAE----LKKVKSSFPSNALYSIQRFKGLGE 445
DD + +K+V+ + +R KGLGE
Sbjct: 627 DDKDYEDLIKRVEKG--GGEITRKKRNKGLGE 656
>UNIPROTKB|F1Q2M4 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 EMBL:AAEX03006463
Ensembl:ENSCAFT00000025539 Uniprot:F1Q2M4
Length = 1533
Score = 305 (112.4 bits), Expect = 8.2e-24, P = 8.2e-24
Identities = 100/370 (27%), Positives = 167/370 (45%)
Query: 137 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 195
+ + NSI T GG H++ + + T+ ++ + KK+K +++ V+ + ++
Sbjct: 311 ISFVNSIATSKGGRHVDYIADQIVTKLVDVVKKKNKG----GVAVKAHQVKNHMWIFVNA 366
Query: 196 RVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXX 255
+ NP F+ QTK + +V+ S + ++++
Sbjct: 367 LIENPTFDSQTKENM-TLQVKSF--GSTCQLSEKFIKAATGCGIVESILNWVKFKAQIQL 423
Query: 256 XXXXXXVRQKSVLRSSSLPGKLADCSST---TPEESEIFIVEGDSA-----GGSAKQGRD 307
V+ R +P KL D + E + + EGDSA G GRD
Sbjct: 424 NKKCSAVKHN---RIKGIP-KLDDANDAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRD 479
Query: 308 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK----GEDFKKEALRYHKI 363
+ + PLRGKILNV + +N EI N+I+ +GL K ED K LRY KI
Sbjct: 480 K--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYDDEDSLK-TLRYGKI 536
Query: 364 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELK 423
+I+TD D DG+HI+ LL+ F + +L + + P+ KV + KQ Y E +
Sbjct: 537 MIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFE 596
Query: 424 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRML--KQLVIEDAAEANVVFSSL 481
+ KSS P++ + ++ +KGLG + E N ++ + K ED A ++ FS
Sbjct: 597 EWKSSTPNHKKWKVKYYKGLGTSTSKEAKEYFANMKRHRIQFKYSGPEDDAAISLAFSK- 655
Query: 482 MGARVDTRKE 491
++D RKE
Sbjct: 656 --KQIDDRKE 663
>UNIPROTKB|J9PAY8 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 OMA:MFKQTWM
EMBL:AAEX03006463 Ensembl:ENSCAFT00000046104 Uniprot:J9PAY8
Length = 1541
Score = 305 (112.4 bits), Expect = 8.2e-24, P = 8.2e-24
Identities = 100/370 (27%), Positives = 167/370 (45%)
Query: 137 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 195
+ + NSI T GG H++ + + T+ ++ + KK+K +++ V+ + ++
Sbjct: 320 ISFVNSIATSKGGRHVDYIADQIVTKLVDVVKKKNKG----GVAVKAHQVKNHMWIFVNA 375
Query: 196 RVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXX 255
+ NP F+ QTK + +V+ S + ++++
Sbjct: 376 LIENPTFDSQTKENM-TLQVKSF--GSTCQLSEKFIKAATGCGIVESILNWVKFKAQIQL 432
Query: 256 XXXXXXVRQKSVLRSSSLPGKLADCSST---TPEESEIFIVEGDSA-----GGSAKQGRD 307
V+ R +P KL D + E + + EGDSA G GRD
Sbjct: 433 NKKCSAVKHN---RIKGIP-KLDDANDAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRD 488
Query: 308 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK----GEDFKKEALRYHKI 363
+ + PLRGKILNV + +N EI N+I+ +GL K ED K LRY KI
Sbjct: 489 K--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYDDEDSLK-TLRYGKI 545
Query: 364 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELK 423
+I+TD D DG+HI+ LL+ F + +L + + P+ KV + KQ Y E +
Sbjct: 546 MIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFE 605
Query: 424 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRML--KQLVIEDAAEANVVFSSL 481
+ KSS P++ + ++ +KGLG + E N ++ + K ED A ++ FS
Sbjct: 606 EWKSSTPNHKKWKVKYYKGLGTSTSKEAKEYFANMKRHRIQFKYSGPEDDAAISLAFSK- 664
Query: 482 MGARVDTRKE 491
++D RKE
Sbjct: 665 --KQIDDRKE 672
>MGI|MGI:98790 [details] [associations]
symbol:Top2a "topoisomerase (DNA) II alpha" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003916 "DNA
topoisomerase activity" evidence=ISO] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISO;IGI;IDA] [GO:0005080 "protein kinase C binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006200 "ATP catabolic process"
evidence=IGI;IDA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISO;IDA] [GO:0006266
"DNA ligation" evidence=ISO] [GO:0006312 "mitotic recombination"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO] [GO:0007059 "chromosome segregation"
evidence=ISO;IMP;IDA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] [GO:0008144 "drug binding" evidence=ISO] [GO:0008301
"DNA binding, bending" evidence=ISO] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISO] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0019899 "enzyme binding" evidence=ISO]
[GO:0030261 "chromosome condensation" evidence=IMP] [GO:0030263
"apoptotic chromosome condensation" evidence=ISO] [GO:0040016
"embryonic cleavage" evidence=IMP] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0042826 "histone
deacetylase binding" evidence=ISO] [GO:0043065 "positive regulation
of apoptotic process" evidence=ISO] [GO:0043130 "ubiquitin binding"
evidence=ISO] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO]
[GO:0043566 "structure-specific DNA binding" evidence=ISO]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0045070 "positive regulation of viral genome replication"
evidence=ISO] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 MGI:MGI:98790 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0042493
GO:GO:0000287 GO:GO:0008144 GO:GO:0007568 GO:GO:0043565
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0006261 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0030261 GO:GO:0006266
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0009330 GO:GO:0070683
GO:GO:0000712 GO:GO:0071107 EMBL:AL591067 GO:GO:0000795
GO:GO:0006265 GO:GO:0043566 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164 CTD:7153
HOGENOM:HOG000216693 HOVERGEN:HBG052998 OrthoDB:EOG4KWJS0
GO:GO:0045870 EMBL:D12513 EMBL:U01915 IPI:IPI00122223 PIR:JS0703
RefSeq:NP_035753.2 UniGene:Mm.4237 ProteinModelPortal:Q01320
SMR:Q01320 IntAct:Q01320 STRING:Q01320 PhosphoSite:Q01320
PaxDb:Q01320 PRIDE:Q01320 Ensembl:ENSMUST00000068031 GeneID:21973
KEGG:mmu:21973 UCSC:uc007lid.1 GeneTree:ENSGT00390000016222
InParanoid:Q01320 OMA:MFKQTWM BindingDB:Q01320 ChEMBL:CHEMBL3586
ChiTaRS:TOP2A NextBio:301670 Bgee:Q01320 CleanEx:MM_TOP2A
Genevestigator:Q01320 GermOnline:ENSMUSG00000020914 Uniprot:Q01320
Length = 1528
Score = 269 (99.8 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 77/228 (33%), Positives = 114/228 (50%)
Query: 279 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 333
D S E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 445 DAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 502
Query: 334 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 389
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 503 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 561
Query: 390 TLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPV 449
+L + + P+ KV + KQ Y E ++ KSS P++ + ++ +KGLG
Sbjct: 562 SLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSSTPNHKKWKVKYYKGLGTSTSK 621
Query: 450 QLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRKELIQN 495
+ E + ++ + K ED A ++ FS +VD RKE + N
Sbjct: 622 EAKEYFADMKRHRIQFKYSGPEDDAAISLAFSK---KQVDDRKEWLTN 666
Score = 85 (35.0 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 137 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGEHVREGLTCIISV 195
+ + NSI T GG H++ V + L + KK K+K +++ V+ + ++
Sbjct: 310 ISFVNSIATSKGGRHVDYVADQIVSKLVDVVKK----KNKGGVAVKAHQVKNHMWIFVNA 365
Query: 196 RVPNPEFEGQTKTRL 210
+ NP F+ QTK +
Sbjct: 366 LIENPTFDSQTKENM 380
>UNIPROTKB|P11388 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0040016
"embryonic cleavage" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IDA;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] [GO:0048015 "phosphatidylinositol-mediated signaling"
evidence=NAS] [GO:0006260 "DNA replication" evidence=NAS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0005814 "centriole" evidence=IDA] [GO:0042826 "histone
deacetylase binding" evidence=IPI] [GO:0007059 "chromosome
segregation" evidence=IMP] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IDA] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0030263 "apoptotic chromosome condensation"
evidence=IDA] [GO:0019035 "viral integration complex" evidence=NAS]
[GO:0045070 "positive regulation of viral genome replication"
evidence=IMP] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0006266 "DNA ligation" evidence=IDA] [GO:0008144
"drug binding" evidence=IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=IDA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IDA] [GO:0005080 "protein kinase C
binding" evidence=IPI] [GO:0006281 "DNA repair" evidence=NAS]
[GO:0043130 "ubiquitin binding" evidence=IMP] [GO:0008301 "DNA
binding, bending" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=TAS]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005737 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0005730 GO:GO:0042493 GO:GO:0000287 GO:GO:0008144
GO:GO:0007568 EMBL:CH471152 GO:GO:0043565 GO:GO:0006281
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006261
DrugBank:DB01204 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
DrugBank:DB00537 GO:GO:0048015 Gene3D:3.30.565.10 SUPFAM:SSF55874
DrugBank:DB01044 DrugBank:DB04967 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0043130 GO:GO:0009330 GO:GO:0070683 GO:GO:0000712
DrugBank:DB00445 GO:GO:0071107 DrugBank:DB00467 DrugBank:DB01137
DrugBank:DB00978 DrugBank:DB01059 DrugBank:DB01165 DrugBank:DB00487
DrugBank:DB00444 DrugBank:DB00997 DrugBank:DB00773 GO:GO:0000795
GO:GO:0006265 GO:GO:0043566 DrugBank:DB00276 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 EMBL:AC080112
KO:K03164 CTD:7153 HOVERGEN:HBG052998 EMBL:J04088 EMBL:AF071747
EMBL:AF071738 EMBL:AF071739 EMBL:AF071740 EMBL:AF071741
EMBL:AF071742 EMBL:AF071743 EMBL:AF071744 EMBL:AF071745
EMBL:AF071746 EMBL:AJ011741 EMBL:AJ011742 EMBL:AJ011743
EMBL:AJ011744 EMBL:AJ011745 EMBL:AJ011746 EMBL:AJ011747
EMBL:AJ011748 EMBL:AJ011749 EMBL:AJ011750 EMBL:AJ011751
EMBL:AJ011752 EMBL:AJ011753 EMBL:AJ011754 EMBL:AJ011755
EMBL:AJ011756 EMBL:AJ011757 EMBL:AJ011758 EMBL:AF285157
EMBL:AF285158 EMBL:BC140791 EMBL:AF285159 EMBL:AF069522
EMBL:AF064590 IPI:IPI00414101 IPI:IPI00478232 IPI:IPI00879004
IPI:IPI01011132 PIR:A40493 RefSeq:NP_001058.2 UniGene:Hs.156346
PDB:1LWZ PDB:1ZXM PDB:1ZXN PDB:4FM9 PDBsum:1LWZ PDBsum:1ZXM
PDBsum:1ZXN PDBsum:4FM9 ProteinModelPortal:P11388 SMR:P11388
DIP:DIP-33887N IntAct:P11388 MINT:MINT-98770 STRING:P11388
PhosphoSite:P11388 DMDM:13959709 UCD-2DPAGE:P11388 PaxDb:P11388
PRIDE:P11388 Ensembl:ENST00000423485 GeneID:7153 KEGG:hsa:7153
UCSC:uc002huq.3 GeneCards:GC17M038544 H-InvDB:HIX0013797
HGNC:HGNC:11989 HPA:CAB002448 HPA:HPA006458 HPA:HPA026773
MIM:126430 neXtProt:NX_P11388 PharmGKB:PA354 OrthoDB:EOG4KWJS0
BRENDA:5.99.1.3 BindingDB:P11388 ChEMBL:CHEMBL1806 DrugBank:DB00380
DrugBank:DB04576 DrugBank:DB01177 DrugBank:DB00218 DrugBank:DB01179
DrugBank:DB01208 DrugBank:DB00685 DrugBank:DB00385
EvolutionaryTrace:P11388 GenomeRNAi:7153 NextBio:27992
ArrayExpress:P11388 Bgee:P11388 CleanEx:HS_TOP2A
Genevestigator:P11388 GO:GO:0045870 Uniprot:P11388
Length = 1531
Score = 267 (99.0 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 75/228 (32%), Positives = 113/228 (49%)
Query: 279 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 333
D E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 503
Query: 334 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 389
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 504 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 562
Query: 390 TLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPV 449
+L + + P+ KV + KQ Y E ++ KSS P++ + ++ +KGLG
Sbjct: 563 SLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYKGLGTSTSK 622
Query: 450 QLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRKELIQN 495
+ E + ++ + K ED A ++ FS ++D RKE + N
Sbjct: 623 EAKEYFADMKRHRIQFKYSGPEDDAAISLAFSK---KQIDDRKEWLTN 667
Score = 86 (35.3 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 19/75 (25%), Positives = 39/75 (52%)
Query: 137 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 195
+ + NSI T GG H++ V + T+ ++ + KK+K +++ V+ + ++
Sbjct: 311 ISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNKG----GVAVKAHQVKNHMWIFVNA 366
Query: 196 RVPNPEFEGQTKTRL 210
+ NP F+ QTK +
Sbjct: 367 LIENPTFDSQTKENM 381
>UNIPROTKB|P41515 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:10029
"Cricetulus griseus" [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0008301 "DNA binding,
bending" evidence=ISS] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0000287 GO:GO:0008301 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 PROSITE:PS50880 CTD:7153
HOVERGEN:HBG052998 EMBL:L04607 PIR:A44406 RefSeq:NP_001233667.1
ProteinModelPortal:P41515 SMR:P41515 GeneID:100689304
Uniprot:P41515
Length = 1526
Score = 265 (98.3 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
Identities = 76/224 (33%), Positives = 112/224 (50%)
Query: 279 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 333
D S E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 445 DAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 502
Query: 334 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 389
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 503 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 561
Query: 390 TLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPV 449
+L + + P+ KV + KQ Y E ++ KSS P++ + ++ +KGLG
Sbjct: 562 SLLRHRFLEEFITPIVKVSKNKQELAFYSLPEFEEWKSSTPNHKKWKVKYYKGLGTSTSK 621
Query: 450 QLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRKE 491
+ E + ++ + K ED A ++ FS +VD RKE
Sbjct: 622 EAKEYFADMKRHRIQFKYSGPEDDAAISLAFSK---KQVDDRKE 662
Score = 85 (35.0 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 137 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGEHVREGLTCIISV 195
+ + NSI T GG H++ V + L + KK K+K +++ V+ + ++
Sbjct: 310 ISFVNSIATSKGGRHVDYVADQIVSKLVDVVKK----KNKGGVAVKAHQVKNHMWIFVNA 365
Query: 196 RVPNPEFEGQTKTRL 210
+ NP F+ QTK +
Sbjct: 366 LIENPTFDSQTKENM 380
>RGD|62048 [details] [associations]
symbol:Top2a "topoisomerase (DNA) II alpha" species:10116 "Rattus
norvegicus" [GO:0000287 "magnesium ion binding" evidence=ISO;ISS]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0003677 "DNA binding"
evidence=ISO;TAS] [GO:0003682 "chromatin binding" evidence=ISO;IDA]
[GO:0003916 "DNA topoisomerase activity" evidence=IDA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISO;IDA] [GO:0005080 "protein kinase C binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IDA;TAS]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006261 "DNA-dependent DNA
replication" evidence=IBA] [GO:0006265 "DNA topological change"
evidence=ISO;IDA] [GO:0006266 "DNA ligation" evidence=ISO]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0007059
"chromosome segregation" evidence=ISO;IBA] [GO:0007420 "brain
development" evidence=IEP] [GO:0007568 "aging" evidence=IEP]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO] [GO:0008144 "drug
binding" evidence=ISO] [GO:0008301 "DNA binding, bending"
evidence=ISO;ISS] [GO:0009295 "nucleoid" evidence=IBA] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISO;IDA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0021702 "cerebellar
Purkinje cell differentiation" evidence=IEP] [GO:0021707 "cerebellar
granule cell differentiation" evidence=IEP] [GO:0030261 "chromosome
condensation" evidence=ISO] [GO:0030263 "apoptotic chromosome
condensation" evidence=ISO] [GO:0040016 "embryonic cleavage"
evidence=ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042803 "protein homodimerization activity" evidence=ISO]
[GO:0042826 "histone deacetylase binding" evidence=ISO] [GO:0043065
"positive regulation of apoptotic process" evidence=ISO] [GO:0043130
"ubiquitin binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0043566 "structure-specific DNA binding"
evidence=IDA] [GO:0045070 "positive regulation of viral genome
replication" evidence=ISO] [GO:0045870 "positive regulation of
retroviral genome replication" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0071107 "response to parathyroid hormone stimulus"
evidence=IEP] [GO:0000228 "nuclear chromosome" evidence=ISO]
[GO:0005814 "centriole" evidence=ISO] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 RGD:62048 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0042493
GO:GO:0000287 GO:GO:0008144 GO:GO:0007568 GO:GO:0043565
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0006261 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0009330 GO:GO:0070683 GO:GO:0000712 GO:GO:0071107
GO:GO:0000795 GO:GO:0006265 GO:GO:0043566 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164 CTD:7153
HOGENOM:HOG000216693 HOVERGEN:HBG052998 OrthoDB:EOG4KWJS0
GO:GO:0045870 EMBL:Z46372 EMBL:Z19552 EMBL:Z29676 IPI:IPI00193944
PIR:A48536 PIR:JN0598 RefSeq:NP_071519.2 UniGene:Rn.90996
ProteinModelPortal:P41516 SMR:P41516 STRING:P41516 PRIDE:P41516
GeneID:360243 KEGG:rno:360243 BindingDB:P41516 ChEMBL:CHEMBL3400
NextBio:672745 ArrayExpress:P41516 Genevestigator:P41516
Uniprot:P41516
Length = 1526
Score = 270 (100.1 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 77/228 (33%), Positives = 114/228 (50%)
Query: 279 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 333
D S E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 444 DAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 501
Query: 334 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 389
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 502 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 560
Query: 390 TLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPV 449
+L + + P+ KV + KQ Y E ++ KS+ P++ + ++ +KGLG
Sbjct: 561 SLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSTNPNHKKWKVKYYKGLGTSTSK 620
Query: 450 QLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRKELIQN 495
+ E N ++ + K ED A ++ FS +VD RKE + N
Sbjct: 621 EAKEYFANMKRHRIQFKYSGPEDDAAISLAFSK---KQVDDRKEWLTN 665
Score = 79 (32.9 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 137 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGEHVREGLTCIISV 195
+ + NSI T GG H++ V + L + KK K+K +++ + V+ + +
Sbjct: 309 ISFVNSIATSKGGRHVDYVADQIVSKLVDVVKK----KNKGGVAVKADQVKNHMWIFGNA 364
Query: 196 RVPNPEFEGQTKTRL 210
+ NP F+ QTK +
Sbjct: 365 VIENPTFDSQTKENM 379
>UNIPROTKB|O46374 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9823 "Sus
scrofa" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS] [GO:0000287 "magnesium ion binding" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045870 "positive regulation of
retroviral genome replication" evidence=IEA] [GO:0043130 "ubiquitin
binding" evidence=IEA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IEA] [GO:0042826 "histone deacetylase
binding" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0040016 "embryonic cleavage"
evidence=IEA] [GO:0030263 "apoptotic chromosome condensation"
evidence=IEA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006266 "DNA ligation" evidence=IEA] [GO:0005814 "centriole"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0005654
GO:GO:0005730 GO:GO:0005814 GO:GO:0000287 GO:GO:0008144
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0008301 GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10
SUPFAM:SSF55874 GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 HOVERGEN:HBG052998
OrthoDB:EOG4KWJS0 GO:GO:0045870 GeneTree:ENSGT00390000016222
OMA:MFKQTWM EMBL:AB009387 RefSeq:NP_999049.1 UniGene:Ssc.14506
ProteinModelPortal:O46374 SMR:O46374 STRING:O46374 PRIDE:O46374
Ensembl:ENSSSCT00000019023 GeneID:396917 KEGG:ssc:396917
CTD:100038293 Uniprot:O46374
Length = 1533
Score = 262 (97.3 bits), Expect = 8.6e-23, Sum P(2) = 8.6e-23
Identities = 74/224 (33%), Positives = 111/224 (49%)
Query: 279 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 333
D E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 503
Query: 334 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 389
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 504 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 562
Query: 390 TLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPV 449
+L + + P+ KV + KQ Y E ++ KSS P++ + ++ +KGLG
Sbjct: 563 SLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYKGLGTSTSK 622
Query: 450 QLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRKE 491
+ E + ++ + K ED A ++ FS ++D RKE
Sbjct: 623 EAKEYFADMKRHRIQFKYSGPEDDAAISLAFSK---KQIDDRKE 663
Score = 85 (35.0 bits), Expect = 8.6e-23, Sum P(2) = 8.6e-23
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 137 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGEHVREGLTCIISV 195
+ + NSI T GG H++ V + L + KK K+K +++ V+ + ++
Sbjct: 311 ISFVNSIATSKGGRHVDYVADQIVAKLVDVVKK----KNKGGVAVKAHQVKNHMWIFVNA 366
Query: 196 RVPNPEFEGQTKTRL 210
+ NP F+ QTK +
Sbjct: 367 LIENPTFDSQTKENM 381
>UNIPROTKB|Q0DYE1 [details] [associations]
symbol:Os02g0699700 "DNA topoisomerase 2" species:39947
"Oryza sativa Japonica Group" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
EMBL:AP008208 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K03164
RefSeq:NP_001047833.1 UniGene:Os.34202 ProteinModelPortal:Q0DYE1
STRING:Q0DYE1 PRIDE:Q0DYE1 GeneID:4330426 KEGG:osa:4330426
Gramene:Q0DYE1 Uniprot:Q0DYE1
Length = 956
Score = 293 (108.2 bits), Expect = 9.4e-23, P = 9.4e-23
Identities = 120/501 (23%), Positives = 219/501 (43%)
Query: 22 PVDSKDRQG---TRIRFWPDKQVFTTAIQFDHNTIA---GRIRELAFLNPKLTIALRKED 75
P +K +QG TR+ F PD F +++ +A R+ ++A K T+ + +
Sbjct: 201 PQITKCKQGENWTRVTFKPDLAKFNMT-HLENDVVALMRKRVVDMAGTLGK-TVKVELDH 258
Query: 76 SDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDT 135
+ +++Y ++ Y++ + D+ ++++ + V+ ++ + +
Sbjct: 259 QKVPVHSFSDY-----VKLYIKSASKDRDDVNELPSISQKVND-RWEVCVSLSEGQFQQ- 311
Query: 136 MLGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIIS 194
+ + N I TI GGTH++ V + T +N + K++K K +V+ L ++
Sbjct: 312 -VSFVNRIATIKGGTHVDYVTNQIATHVMNIVNKRNKNAHMK-----AHNVKSHLWVFVN 365
Query: 195 VRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXX 254
+ NP F+ QTK L R+ S E ++L+
Sbjct: 366 ALIDNPAFDSQTKETL---TTRQASFGSKCELSDDFLKKVGSSAIVLNLLSWAEFKLSKE 422
Query: 255 XXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESE---IFIVEGDSAGGSAKQGRD---R 308
R R + +P KL D + ++S + + EGDSA A G R
Sbjct: 423 LQKTDGSKRS----RLTGIP-KLEDANGAGGKDSNNCTLILTEGDSAKALAMAGISVVGR 477
Query: 309 RFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK-EALRYHKIIILT 367
+ + PLRGK+LNV + +N EIQN+ + LGL G+ + + LRY ++I+T
Sbjct: 478 DYYGVFPLRGKLLNVREASHKQIMENAEIQNIKQILGLQ-HGKQYDSTKGLRYGHLMIMT 536
Query: 368 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVG-VPPLYKV--ERGKQVQY-CYDDAELK 423
D D DG+HI+ LL+ F + + +L V + P+ K +R K++ Y E +
Sbjct: 537 DQDHDGSHIKGLLINFIHSFWPSLIKIPSFLVEFITPIIKATNKRDKKIVLPFYSMPEYE 596
Query: 424 KVKSSFPSNAL-YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
+ K S NA +SI+ +KGLG + + K V ++ + N + +
Sbjct: 597 QWKESLGGNASGWSIKYYKGLGTSTSSE-GRQYFQDIAKHKKDFVWKNDQDDNDIELAFS 655
Query: 483 GARVDTRKELIQNAANLVNLD 503
R+ RKE + N + +LD
Sbjct: 656 KKRITDRKEWLTNFQSGTHLD 676
>UNIPROTKB|F1MDU7 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045870
"positive regulation of retroviral genome replication"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0042826 "histone deacetylase binding"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040016 "embryonic cleavage" evidence=IEA]
[GO:0030263 "apoptotic chromosome condensation" evidence=IEA]
[GO:0009330 "DNA topoisomerase complex (ATP-hydrolyzing)"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0007059 "chromosome
segregation" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006266 "DNA ligation" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005814
"centriole" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase
C binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0008144
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GO:GO:0045870 GeneTree:ENSGT00390000016222
OMA:MFKQTWM EMBL:DAAA02049137 IPI:IPI00923890
Ensembl:ENSBTAT00000061367 ArrayExpress:F1MDU7 Uniprot:F1MDU7
Length = 1533
Score = 259 (96.2 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 74/224 (33%), Positives = 110/224 (49%)
Query: 279 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 333
D E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 503
Query: 334 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 389
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 504 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 562
Query: 390 TLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPV 449
+L + + P+ KV + KQ Y E ++ KSS P++ + ++ +KGLG
Sbjct: 563 SLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYKGLGTSTSK 622
Query: 450 QLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRKE 491
+ E + ++ + K ED A ++ FS + D RKE
Sbjct: 623 EAKEYFADMKRHRIQFKYSGPEDDAAISLAFSK---KQTDDRKE 663
Score = 86 (35.3 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 19/75 (25%), Positives = 39/75 (52%)
Query: 137 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 195
+ + NSI T GG H++ V + T+ ++ + KK+K +++ V+ + ++
Sbjct: 311 ISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNKG----GVAVKAHQVKNHMWIFVNA 366
Query: 196 RVPNPEFEGQTKTRL 210
+ NP F+ QTK +
Sbjct: 367 LIENPTFDSQTKENM 381
>UNIPROTKB|F1NR58 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 IPI:IPI00819818
EMBL:AADN02001127 Ensembl:ENSGALT00000037716 ArrayExpress:F1NR58
Uniprot:F1NR58
Length = 1627
Score = 262 (97.3 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 80/245 (32%), Positives = 122/245 (49%)
Query: 266 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 315
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 454 SSVKHSKIKGIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 511
Query: 316 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 372
LRGKILNV + +N EI N+I+ +GL K ED + ++LRY KI+I+TD D D
Sbjct: 512 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQD 571
Query: 373 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 432
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K ++
Sbjct: 572 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHMENH 631
Query: 433 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 490
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 632 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 688
Query: 491 ELIQN 495
E + N
Sbjct: 689 EWLTN 693
Score = 83 (34.3 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 29/108 (26%), Positives = 48/108 (44%)
Query: 104 KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 163
K +H+VV R DV L + + + NSI T GG H++ V + L
Sbjct: 313 KVIHEVVNERWDV-------CLTLSEKGFQQ--ISFVNSIATTKGGRHVDYVVDQVVGKL 363
Query: 164 NSLGKKSKTVKDK-DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRL 210
+ KK K+K +S+ V+ + ++ + NP F+ QTK +
Sbjct: 364 IEVVKK----KNKAGVSVKPFQVKNHIWVFVNCLIENPSFDSQTKENM 407
>UNIPROTKB|O42131 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003682 "chromatin binding" evidence=IBA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS;IBA] [GO:0005080 "protein kinase C binding"
evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change"
evidence=ISS;IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] [GO:0042826 "histone deacetylase binding"
evidence=IBA] [GO:0071778 "WINAC complex" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005080 GO:GO:0005654 GO:GO:0003682
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998 EMBL:AB007446
IPI:IPI00819818 RefSeq:NP_990413.1 UniGene:Gga.30963
ProteinModelPortal:O42131 SMR:O42131 STRING:O42131 PRIDE:O42131
GeneID:395966 KEGG:gga:395966 CTD:7155 NextBio:20816031
Uniprot:O42131
Length = 1627
Score = 262 (97.3 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 80/245 (32%), Positives = 122/245 (49%)
Query: 266 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 315
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 454 SSVKHSKIKGIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 511
Query: 316 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 372
LRGKILNV + +N EI N+I+ +GL K ED + ++LRY KI+I+TD D D
Sbjct: 512 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQD 571
Query: 373 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 432
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K ++
Sbjct: 572 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHMENH 631
Query: 433 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 490
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 632 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 688
Query: 491 ELIQN 495
E + N
Sbjct: 689 EWLTN 693
Score = 83 (34.3 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 29/108 (26%), Positives = 48/108 (44%)
Query: 104 KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 163
K +H+VV R DV L + + + NSI T GG H++ V + L
Sbjct: 313 KVIHEVVNERWDV-------CLTLSEKGFQQ--ISFVNSIATTKGGRHVDYVVDQVVGKL 363
Query: 164 NSLGKKSKTVKDK-DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRL 210
+ KK K+K +S+ V+ + ++ + NP F+ QTK +
Sbjct: 364 IEVVKK----KNKAGVSVKPFQVKNHIWVFVNCLIENPSFDSQTKENM 407
>UNIPROTKB|E1BZ19 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005080 "protein kinase C binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0042826 "histone deacetylase
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005829 GO:GO:0005524 GO:GO:0005654 GO:GO:0003682
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:AADN02001127 IPI:IPI00599764
ProteinModelPortal:E1BZ19 Ensembl:ENSGALT00000018432
ArrayExpress:E1BZ19 Uniprot:E1BZ19
Length = 1629
Score = 262 (97.3 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 80/245 (32%), Positives = 122/245 (49%)
Query: 266 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 315
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 456 SSVKHSKIKGIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 513
Query: 316 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 372
LRGKILNV + +N EI N+I+ +GL K ED + ++LRY KI+I+TD D D
Sbjct: 514 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQD 573
Query: 373 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 432
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K ++
Sbjct: 574 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHMENH 633
Query: 433 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 490
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 634 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 690
Query: 491 ELIQN 495
E + N
Sbjct: 691 EWLTN 695
Score = 83 (34.3 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 31/110 (28%), Positives = 48/110 (43%)
Query: 104 KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLT-RT 162
K +H+VV R DV L + + + NSI T GG H++ V + +
Sbjct: 313 KVIHEVVNERWDV-------CLTLSEKGFQQ--ISFVNSIATTKGGRHVDYVVDQVVGKL 363
Query: 163 LNSLGKKSKT-VKDKDISLSG-EHVREGLTCIISVRVPNPEFEGQTKTRL 210
+ + KK+K V K S H+ + C+I NP F+ QTK +
Sbjct: 364 IEVVKKKNKAGVSVKPFQASNFNHIWVFVNCLIE----NPSFDSQTKENM 409
>WB|WBGene00019884 [details] [associations]
symbol:R05D3.12 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000003 "reproduction" evidence=IMP] [GO:0007276 "gamete
generation" evidence=IMP] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 EMBL:FO081667 GO:GO:0007276
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222
RefSeq:NP_001129839.2 RefSeq:NP_001254958.1 RefSeq:NP_741252.2
ProteinModelPortal:P34534 SMR:P34534 PaxDb:P34534
EnsemblMetazoa:R05D3.12a GeneID:259522 KEGG:cel:CELE_R05D3.12
UCSC:R05D3.1 CTD:259522 WormBase:R05D3.12a WormBase:R05D3.12b
WormBase:R05D3.12c InParanoid:P34534 OMA:KLEDAEW NextBio:891486
Uniprot:P34534
Length = 1170
Score = 252 (93.8 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 72/228 (31%), Positives = 115/228 (50%)
Query: 284 TPEESEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 340
T E+ + + EGDSA A G + R + PL+GK+LNV D+A KNEEI NL
Sbjct: 471 TAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNLDDARASKNEEISNL 530
Query: 341 IRALGLGVKGED-FKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIY 398
+R LGL + + +E+LRY +++IL D D DG+HI+ L++ F +++ +L +G I
Sbjct: 531 LRILGLKFEDSNSITRESLRYGRLLILADQDEDGSHIKGLIVNFIHKFWPSLVHTDGFIQ 590
Query: 399 VGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWE--TTL 456
PL K ++G +V+ + E +K + + I+ +KGLG + E + L
Sbjct: 591 SFRTPLLKAKKGDKVRSFFSMNEYRKW-ADVEEGGKWKIKYYKGLGTSTSNEAREYFSDL 649
Query: 457 NPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAAN-LVNLD 503
+ K D + F + D RKE I+ + N + N D
Sbjct: 650 DHHTVNFKYTGTTDDDAIRMAFDR---DKSDERKEWIRRSENEITNED 694
Score = 89 (36.4 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 45/191 (23%), Positives = 78/191 (40%)
Query: 23 VDSKDRQGTRIRFWPDKQVFTTAIQFDH--NTIAGRIRELAFLNPK-LTIALRKEDSDPE 79
+D + T++ F PD + F D + I R+ E+A P+ + + L + D +
Sbjct: 225 LDETVKDYTKVEFVPDLERFQIDKLSDDVIDLIGRRVFEVAATLPRDVDVYLNGQKCDVD 284
Query: 80 KNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGY 139
G E+YV+ N L R V G+ S ++ +
Sbjct: 285 -----------GFEDYVKMFNDSSSLLFLHPTPRWHV-GVAKRNNFFGESHVVLPKIVSF 332
Query: 140 ANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPN 199
N+I T GG+H++ V + + + SK + D S+ ++ L+ I+ + N
Sbjct: 333 VNNINTEKGGSHVDYVMDKIVNIIKPI-VDSK-LGDPTKSVKPAVIKNNLSIFINCLIEN 390
Query: 200 PEFEGQTKTRL 210
P FE QTK L
Sbjct: 391 PSFESQTKETL 401
>UNIPROTKB|P34534 [details] [associations]
symbol:R05D3.12 "Putative DNA topoisomerase 2,
mitochondrial" species:6239 "Caenorhabditis elegans" [GO:0009295
"nucleoid" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:FO081667 GO:GO:0007276 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 HOGENOM:HOG000216693
GeneTree:ENSGT00390000016222 RefSeq:NP_001129839.2
RefSeq:NP_001254958.1 RefSeq:NP_741252.2 ProteinModelPortal:P34534
SMR:P34534 PaxDb:P34534 EnsemblMetazoa:R05D3.12a GeneID:259522
KEGG:cel:CELE_R05D3.12 UCSC:R05D3.1 CTD:259522 WormBase:R05D3.12a
WormBase:R05D3.12b WormBase:R05D3.12c InParanoid:P34534 OMA:KLEDAEW
NextBio:891486 Uniprot:P34534
Length = 1170
Score = 252 (93.8 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 72/228 (31%), Positives = 115/228 (50%)
Query: 284 TPEESEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 340
T E+ + + EGDSA A G + R + PL+GK+LNV D+A KNEEI NL
Sbjct: 471 TAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNLDDARASKNEEISNL 530
Query: 341 IRALGLGVKGED-FKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIY 398
+R LGL + + +E+LRY +++IL D D DG+HI+ L++ F +++ +L +G I
Sbjct: 531 LRILGLKFEDSNSITRESLRYGRLLILADQDEDGSHIKGLIVNFIHKFWPSLVHTDGFIQ 590
Query: 399 VGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWE--TTL 456
PL K ++G +V+ + E +K + + I+ +KGLG + E + L
Sbjct: 591 SFRTPLLKAKKGDKVRSFFSMNEYRKW-ADVEEGGKWKIKYYKGLGTSTSNEAREYFSDL 649
Query: 457 NPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAAN-LVNLD 503
+ K D + F + D RKE I+ + N + N D
Sbjct: 650 DHHTVNFKYTGTTDDDAIRMAFDR---DKSDERKEWIRRSENEITNED 694
Score = 89 (36.4 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 45/191 (23%), Positives = 78/191 (40%)
Query: 23 VDSKDRQGTRIRFWPDKQVFTTAIQFDH--NTIAGRIRELAFLNPK-LTIALRKEDSDPE 79
+D + T++ F PD + F D + I R+ E+A P+ + + L + D +
Sbjct: 225 LDETVKDYTKVEFVPDLERFQIDKLSDDVIDLIGRRVFEVAATLPRDVDVYLNGQKCDVD 284
Query: 80 KNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGY 139
G E+YV+ N L R V G+ S ++ +
Sbjct: 285 -----------GFEDYVKMFNDSSSLLFLHPTPRWHV-GVAKRNNFFGESHVVLPKIVSF 332
Query: 140 ANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPN 199
N+I T GG+H++ V + + + SK + D S+ ++ L+ I+ + N
Sbjct: 333 VNNINTEKGGSHVDYVMDKIVNIIKPI-VDSK-LGDPTKSVKPAVIKNNLSIFINCLIEN 390
Query: 200 PEFEGQTKTRL 210
P FE QTK L
Sbjct: 391 PSFESQTKETL 401
>UNIPROTKB|E9PCY5 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007409 "axonogenesis" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005634 GO:GO:0001764 GO:GO:0005694 GO:GO:0030900
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 HGNC:HGNC:11990 ChiTaRS:TOP2B EMBL:AC093416
IPI:IPI00925477 ProteinModelPortal:E9PCY5 SMR:E9PCY5
Ensembl:ENST00000424225 ArrayExpress:E9PCY5 Bgee:E9PCY5
Uniprot:E9PCY5
Length = 1150
Score = 258 (95.9 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 79/245 (32%), Positives = 120/245 (48%)
Query: 266 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 315
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 444 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 501
Query: 316 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 372
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 502 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 561
Query: 373 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 432
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K +
Sbjct: 562 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQ 621
Query: 433 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 490
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 622 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 678
Query: 491 ELIQN 495
E + N
Sbjct: 679 EWLTN 683
Score = 81 (33.6 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 137 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 195
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 327 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 382
Query: 196 RVPNPEFEGQTKTRL 210
+ NP F+ QTK +
Sbjct: 383 LIENPTFDSQTKENM 397
>UNIPROTKB|Q7RJ69 [details] [associations]
symbol:PY03394 "DNA topoisomerase 2" species:73239
"Plasmodium yoelii yoelii" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 KO:K03164 EMBL:AABL01000973
RefSeq:XP_731396.1 HSSP:P06786 ProteinModelPortal:Q7RJ69
STRING:Q7RJ69 GeneID:3830618 KEGG:pyo:PY03394
EuPathDB:PlasmoDB:PY03394 Uniprot:Q7RJ69
Length = 1489
Score = 231 (86.4 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
Identities = 66/234 (28%), Positives = 120/234 (51%)
Query: 279 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 333
D S +E + + EGDSA G + GRDR + PL+GK+LNV +
Sbjct: 490 DAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDR--YGVFPLKGKLLNVRDASFKQLMD 547
Query: 334 NEEIQNLIRALGLGVKGEDFKK-EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLF 392
N+EIQN+ + +GL + ++ + + LRY ++I+TD D DG+HI+ LL+ +++ +L
Sbjct: 548 NKEIQNIFKIMGLDITDKNKQDIKGLRYGSLMIMTDQDYDGSHIKGLLINMIHKFWPSLL 607
Query: 393 D-EGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNAL-YSIQRFKGLGEMMPVQ 450
+G + V P+ KV++G Q + AE ++ K + +N + + I+ +KGLG +
Sbjct: 608 KHKGFLCEFVTPIVKVQKGNQELSFFTIAEYEQWKEN--TNLVGWKIKYYKGLGTSTDKE 665
Query: 451 LWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDH 504
+ + + + L D + + + + R++ RK +QN +DH
Sbjct: 666 FKQYFSDIQSHKIFFLWTGDR-DGDSIDMAFSKKRIEDRKLWLQNFILGSYVDH 718
Score = 113 (44.8 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
Identities = 26/88 (29%), Positives = 41/88 (46%)
Query: 129 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREG 188
+D + + NSI T GGTH+ + L LNSL KK+ + + H+R
Sbjct: 344 TDGSQFQQVSFVNSICTTKGGTHVSYIVDQL---LNSLSKKANAKNKGGMEIKAGHIRNH 400
Query: 189 LTCIISVRVPNPEFEGQTKTRLGNPEVR 216
L ++ + NP F+ QTK L + +
Sbjct: 401 LWVFVNCLIVNPTFDSQTKETLTTKQAK 428
>ZFIN|ZDB-GENE-041008-136 [details] [associations]
symbol:top2b "topoisomerase (DNA) II beta"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS] [GO:0030261
"chromosome condensation" evidence=ISS] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS] [GO:0007059 "chromosome segregation"
evidence=ISS;IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0071778 "WINAC complex"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0005080 "protein kinase C binding" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] [GO:0003682 "chromatin binding"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0042826
"histone deacetylase binding" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0010842 "retina layer
formation" evidence=IMP] [GO:0031290 "retinal ganglion cell axon
guidance" evidence=IMP] [GO:0007412 "axon target recognition"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 ZFIN:ZDB-GENE-041008-136
GO:GO:0005524 GO:GO:0005080 GO:GO:0003682 GO:GO:0006261
GO:GO:0010842 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0007412
GO:GO:0031290 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998
GeneTree:ENSGT00390000016222 CTD:7155 EMBL:BX927238 EMBL:CR391921
IPI:IPI00495305 RefSeq:NP_001038656.1 UniGene:Dr.105756 SMR:Q1LUT2
STRING:Q1LUT2 Ensembl:ENSDART00000130695 GeneID:569877
KEGG:dre:569877 InParanoid:Q1LUT2 OMA:PITKAAP NextBio:20889886
Uniprot:Q1LUT2
Length = 1618
Score = 257 (95.5 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 80/245 (32%), Positives = 119/245 (48%)
Query: 266 SVLRSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILP 315
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 448 SSVKHSKIKGIPKLDDANDAGGKHSSECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 505
Query: 316 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 372
LRGKILNV + +N EI N+I+ LGL K +D + ++LRY +I+I+TD D D
Sbjct: 506 LRGKILNVREATHKQIMENAEINNIIKILGLQYKKSYDDPESLKSLRYGRIMIMTDQDQD 565
Query: 373 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 432
G+HI+ LL+ FF+ +L + + P+ K + KQ Y E ++ K S
Sbjct: 566 GSHIKGLLINFFHHNWPSLLKHTFLEEFITPIVKASKNKQEVSFYSIPEFEEWKKHTESY 625
Query: 433 ALYSIQRFKGLGEMMPVQLWETTLNPEQR--MLKQLVIEDAAEANVVFSSLMGARVDTRK 490
+ I+ +KGLG + E + E+ M K ED A + FS + D RK
Sbjct: 626 KTWHIKYYKGLGTSTSKEAKEYFSDMERHRIMFKYNGTEDDAAITLAFSK---KKTDDRK 682
Query: 491 ELIQN 495
E + N
Sbjct: 683 EWLTN 687
Score = 84 (34.6 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 137 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 195
+ + NSI T GG HI+ + + L + KK K+K +S+ V+ L ++
Sbjct: 331 ISFVNSIATTKGGRHIDYIVDQIVGKLIEVVKK----KNKAGVSVKPFQVKNHLWVFVNA 386
Query: 196 RVPNPEFEGQTKTRL 210
+ NP F+ QTK +
Sbjct: 387 LIENPTFDSQTKENM 401
>TAIR|locus:2076201 [details] [associations]
symbol:TOPII "AT3G23890" species:3702 "Arabidopsis
thaliana" [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=IEA;ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS;IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS;IBA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0044774 "mitotic DNA integrity checkpoint"
evidence=IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0000226 "microtubule cytoskeleton organization"
evidence=RCA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006260 "DNA replication" evidence=RCA]
[GO:0006270 "DNA replication initiation" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0009909 "regulation of flower development" evidence=RCA]
[GO:0009957 "epidermal cell fate specification" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016458
"gene silencing" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0034968 "histone lysine
methylation" evidence=RCA] [GO:0051225 "spindle assembly"
evidence=RCA] [GO:0051567 "histone H3-K9 methylation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 EMBL:AP001297
GO:GO:0009330 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 OMA:AKEYFQD
EMBL:L21015 EMBL:U12284 EMBL:U12285 EMBL:M84654 IPI:IPI00527804
PIR:S53598 RefSeq:NP_189031.1 UniGene:At.22343
ProteinModelPortal:P30182 SMR:P30182 STRING:P30182 PaxDb:P30182
PRIDE:P30182 EnsemblPlants:AT3G23890.1 GeneID:821972
KEGG:ath:AT3G23890 GeneFarm:2656 TAIR:At3g23890 InParanoid:P30182
PhylomeDB:P30182 ProtClustDB:PLN03237 Genevestigator:P30182
GermOnline:AT3G23890 Uniprot:P30182
Length = 1473
Score = 289 (106.8 bits), Expect = 5.2e-22, P = 5.2e-22
Identities = 102/381 (26%), Positives = 168/381 (44%)
Query: 137 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVR 196
+ + NSI TI GGTH++ V + +T + + K K+K+ ++ +V+ L ++
Sbjct: 314 VSFVNSIATIKGGTHVDYVTSQITNHIVAAVNK----KNKNANVKAHNVKNHLWVFVNAL 369
Query: 197 VPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXX 256
+ NP F+ QTK L +R Q EL D
Sbjct: 370 IDNPAFDSQTKETL---TLR-------QSSFGSKCELSEDFLKKVGKSGVVENLLSWADF 419
Query: 257 XXXXXVRQKSVLRSSS-LPGKLADCSSTTPEESEI---FIVEGDSAGGSAKQGRD---RR 309
+++ ++ L KL D + + S + + EGDSA A GR
Sbjct: 420 KQNKDLKKSDGAKTGRVLVEKLDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNN 479
Query: 310 FQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDA 369
+ + PLRGK+LNV + N+EI+NL + LGL + +LRY +++I+TD
Sbjct: 480 YCGVFPLRGKLLNVREASTTQITNNKEIENLKKILGLKQNMKYENVNSLRYGQMMIMTDQ 539
Query: 370 DVDGAHIRTLLLTFFYRYQKTLFDEGCIYVG-VPPLYKVER-G-KQVQYCYDDAELKKVK 426
D DG+HI+ LL+ F + + +L V + P+ K R G K+V Y E ++ K
Sbjct: 540 DHDGSHIKGLLINFIHSFWPSLLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEYEEWK 599
Query: 427 SSFPSNAL-YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 485
S NA + I+ +KGLG + E N K V ED + + + +
Sbjct: 600 ESLKGNATGWDIKYYKGLGTSTAEEGKEYFSNLGLHK-KDFVWEDEQDGEAIELAFSKKK 658
Query: 486 VDTRKELIQNAANLVNLDHLD 506
++ RK + ++ V +HLD
Sbjct: 659 IEARKNWL---SSYVPGNHLD 676
>MGI|MGI:98791 [details] [associations]
symbol:Top2b "topoisomerase (DNA) II beta" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0001764 "neuron migration" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=ISO;IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISO;IBA] [GO:0005080 "protein
kinase C binding" evidence=ISO;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005694 "chromosome" evidence=IDA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISO;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0042826 "histone deacetylase binding" evidence=ISO;IBA]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0071778 "WINAC
complex" evidence=ISO;IBA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
MGI:MGI:98791 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005080 GO:GO:0005654 GO:GO:0005730
GO:GO:0030900 GO:GO:0003682 GO:GO:0006261 GO:GO:0007409
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0071778 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 HOVERGEN:HBG052998
GeneTree:ENSGT00390000016222 CTD:7155 OMA:AKEYFQD EMBL:D38046
EMBL:BC041106 EMBL:BC054541 IPI:IPI00135443 RefSeq:NP_033435.2
UniGene:Mm.130362 ProteinModelPortal:Q64511 SMR:Q64511
IntAct:Q64511 STRING:Q64511 PhosphoSite:Q64511 PaxDb:Q64511
PRIDE:Q64511 Ensembl:ENSMUST00000017629 GeneID:21974 KEGG:mmu:21974
UCSC:uc007shc.1 InParanoid:Q64511 OrthoDB:EOG4640B2
BindingDB:Q64511 ChEMBL:CHEMBL5564 NextBio:301674 Bgee:Q64511
CleanEx:MM_TOP2B Genevestigator:Q64511
GermOnline:ENSMUSG00000017485 Uniprot:Q64511
Length = 1612
Score = 258 (95.9 bits), Expect = 5.8e-22, Sum P(2) = 5.8e-22
Identities = 79/245 (32%), Positives = 120/245 (48%)
Query: 266 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 315
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 437 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 494
Query: 316 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 372
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 495 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 554
Query: 373 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 432
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K +
Sbjct: 555 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQ 614
Query: 433 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 490
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 615 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 671
Query: 491 ELIQN 495
E + N
Sbjct: 672 EWLTN 676
Score = 82 (33.9 bits), Expect = 5.8e-22, Sum P(2) = 5.8e-22
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 137 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 195
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 320 ISFVNSIATTKGGRHVDYVVDQVVSKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 375
Query: 196 RVPNPEFEGQTKTRL 210
+ NP F+ QTK +
Sbjct: 376 LIENPTFDSQTKENM 390
>UNIPROTKB|F1MU48 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9913 "Bos
taurus" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0042826
"histone deacetylase binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005080 "protein kinase C binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:DAAA02061099 EMBL:DAAA02061100 EMBL:DAAA02061101
EMBL:DAAA02061102 IPI:IPI01003475 Ensembl:ENSBTAT00000006030
Uniprot:F1MU48
Length = 1599
Score = 258 (95.9 bits), Expect = 7.3e-22, Sum P(2) = 7.3e-22
Identities = 79/245 (32%), Positives = 120/245 (48%)
Query: 266 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 315
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 428 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 485
Query: 316 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 372
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 486 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 545
Query: 373 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 432
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K +
Sbjct: 546 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQ 605
Query: 433 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 490
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 606 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 662
Query: 491 ELIQN 495
E + N
Sbjct: 663 EWLTN 667
Score = 81 (33.6 bits), Expect = 7.3e-22, Sum P(2) = 7.3e-22
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 137 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 195
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 311 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 366
Query: 196 RVPNPEFEGQTKTRL 210
+ NP F+ QTK +
Sbjct: 367 LIENPTFDSQTKENM 381
>UNIPROTKB|F1PRA7 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0042826 "histone deacetylase binding" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0001764 "neuron migration" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524 GO:GO:0001764
GO:GO:0005654 GO:GO:0030900 GO:GO:0003682 GO:GO:0007409
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:AAEX03013556 Ensembl:ENSCAFT00000009221
Uniprot:F1PRA7
Length = 1602
Score = 258 (95.9 bits), Expect = 7.3e-22, Sum P(2) = 7.3e-22
Identities = 79/245 (32%), Positives = 120/245 (48%)
Query: 266 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 315
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 426 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 483
Query: 316 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 372
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 484 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 543
Query: 373 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 432
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K +
Sbjct: 544 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQ 603
Query: 433 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 490
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 604 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 660
Query: 491 ELIQN 495
E + N
Sbjct: 661 EWLTN 665
Score = 81 (33.6 bits), Expect = 7.3e-22, Sum P(2) = 7.3e-22
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 137 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 195
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 309 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 364
Query: 196 RVPNPEFEGQTKTRL 210
+ NP F+ QTK +
Sbjct: 365 LIENPTFDSQTKENM 379
>UNIPROTKB|Q64399 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:10030
"Cricetulus longicaudatus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GO:GO:0005730 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 PROSITE:PS50880 HOVERGEN:HBG052998 EMBL:X86455
ProteinModelPortal:Q64399 SMR:Q64399 PRIDE:Q64399 Uniprot:Q64399
Length = 1612
Score = 258 (95.9 bits), Expect = 7.4e-22, Sum P(2) = 7.4e-22
Identities = 79/245 (32%), Positives = 120/245 (48%)
Query: 266 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 315
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 437 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 494
Query: 316 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 372
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 495 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 554
Query: 373 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 432
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K +
Sbjct: 555 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQ 614
Query: 433 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 490
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 615 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 671
Query: 491 ELIQN 495
E + N
Sbjct: 672 EWLTN 676
Score = 81 (33.6 bits), Expect = 7.4e-22, Sum P(2) = 7.4e-22
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 137 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 195
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 320 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 375
Query: 196 RVPNPEFEGQTKTRL 210
+ NP F+ QTK +
Sbjct: 376 LIENPTFDSQTKENM 390
>UNIPROTKB|F1RS45 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0042826
"histone deacetylase binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005080 "protein kinase C binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:CU582923 Ensembl:ENSSSCT00000012279
ArrayExpress:F1RS45 Uniprot:F1RS45
Length = 1615
Score = 258 (95.9 bits), Expect = 7.4e-22, Sum P(2) = 7.4e-22
Identities = 79/245 (32%), Positives = 120/245 (48%)
Query: 266 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 315
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 441 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 498
Query: 316 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 372
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 499 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 558
Query: 373 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 432
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K +
Sbjct: 559 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELAFYSIPEFDEWKKHIENQ 618
Query: 433 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 490
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 619 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 675
Query: 491 ELIQN 495
E + N
Sbjct: 676 EWLTN 680
Score = 81 (33.6 bits), Expect = 7.4e-22, Sum P(2) = 7.4e-22
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 137 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 195
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 324 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 379
Query: 196 RVPNPEFEGQTKTRL 210
+ NP F+ QTK +
Sbjct: 380 LIENPTFDSQTKENM 394
>UNIPROTKB|Q02880 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA;IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IDA;IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0005080
"protein kinase C binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0042826
"histone deacetylase binding" evidence=IPI] [GO:0000792
"heterochromatin" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0008022
"protein C-terminus binding" evidence=IPI] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0071778 "WINAC complex" evidence=IDA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0006261 GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998 CTD:7155 EMBL:X68060
EMBL:X71911 EMBL:Z15111 EMBL:Z15115 EMBL:M27504 EMBL:AJ011721
EMBL:AJ011722 EMBL:AJ011723 EMBL:AJ011724 EMBL:AJ011725
EMBL:AJ011726 EMBL:AJ011727 EMBL:AJ011728 EMBL:AJ011729
EMBL:AJ011730 EMBL:AJ011731 EMBL:AJ011732 EMBL:X53662 EMBL:U54831
IPI:IPI00027280 IPI:IPI00217709 PIR:S26730 RefSeq:NP_001059.2
UniGene:Hs.475733 PDB:3QX3 PDBsum:3QX3 ProteinModelPortal:Q02880
SMR:Q02880 IntAct:Q02880 STRING:Q02880 PhosphoSite:Q02880
DMDM:20141946 PaxDb:Q02880 PRIDE:Q02880 Ensembl:ENST00000264331
Ensembl:ENST00000435706 GeneID:7155 KEGG:hsa:7155 UCSC:uc003cdj.2
UCSC:uc011awn.1 GeneCards:GC03M025639 H-InvDB:HIX0030807
HGNC:HGNC:11990 HPA:CAB004601 HPA:HPA024120 MIM:126431
neXtProt:NX_Q02880 PharmGKB:PA36672 InParanoid:Q02880 OMA:AKEYFQD
PhylomeDB:Q02880 BindingDB:Q02880 ChEMBL:CHEMBL3396 ChiTaRS:TOP2B
GenomeRNAi:7155 NextBio:27998 ArrayExpress:Q02880 Bgee:Q02880
CleanEx:HS_TOP2B Genevestigator:Q02880 GermOnline:ENSG00000077097
Uniprot:Q02880
Length = 1626
Score = 258 (95.9 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 79/245 (32%), Positives = 120/245 (48%)
Query: 266 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 315
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 449 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 506
Query: 316 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 372
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 507 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 566
Query: 373 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 432
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K +
Sbjct: 567 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQ 626
Query: 433 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 490
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 627 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 683
Query: 491 ELIQN 495
E + N
Sbjct: 684 EWLTN 688
Score = 81 (33.6 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 137 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 195
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 332 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 387
Query: 196 RVPNPEFEGQTKTRL 210
+ NP F+ QTK +
Sbjct: 388 LIENPTFDSQTKENM 402
>POMBASE|SPBC1A4.03c [details] [associations]
symbol:top2 "DNA topoisomerase II" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=NAS] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IMP] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IGI;IDA;IMP] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=IGI;IDA;IMP]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=ISO] [GO:0006325 "chromatin organization" evidence=IGI]
[GO:0006406 "mRNA export from nucleus" evidence=IMP] [GO:0007076
"mitotic chromosome condensation" evidence=IMP] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 PomBase:SPBC1A4.03c Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0007076 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006325 GO:GO:0000228
GO:GO:0006271 GO:GO:0000712 GO:GO:0042790 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 OMA:AKEYFQD EMBL:X04326 PIR:T39851
RefSeq:NP_595805.1 ProteinModelPortal:P08096 SMR:P08096
STRING:P08096 EnsemblFungi:SPBC1A4.03c.1 GeneID:2540541
KEGG:spo:SPBC1A4.03c OrthoDB:EOG4XPTPZ NextBio:20801667
Uniprot:P08096
Length = 1485
Score = 280 (103.6 bits), Expect = 5.4e-21, P = 5.4e-21
Identities = 105/430 (24%), Positives = 184/430 (42%)
Query: 84 NEYFFAGGLEEYVQ-WLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANS 142
NE G ++YV+ +L +D KP + + D+A SD + + N+
Sbjct: 305 NERISISGFKKYVEMYLASDTKPDEEPPRVIYEHVNDRWDVAFA-VSDGQFK-QVSFVNN 362
Query: 143 IRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEF 202
I TI GGTH+ V + ++ + KK ++K + ++ + ++ ++ NP F
Sbjct: 363 ISTIRGGTHVNYVANKIVDAIDEVVKK----ENKKAPVKAFQIKNYVQVFVNCQIENPSF 418
Query: 203 EGQTKTRLGNPEVRKVVDQSVQEYLTE-YLELHPDVXXXXXXXXXXXXXXXXXXXXXXXX 261
+ QTK L KV Q L++ +L+
Sbjct: 419 DSQTKETL----TTKVSAFGSQCTLSDKFLKAIKKSSVVEEVLKFATAKADQQLSKGDGG 474
Query: 262 VRQKSVLRSSSLPGKLADCSSTTPEESE---IFIVEGDSAGGSAKQGRD---RRFQAILP 315
+R R + L KL D + +ES + + EGDSA A G R + + P
Sbjct: 475 LRS----RITGLT-KLEDANKAGTKESHKCVLILTEGDSAKSLAVSGLSVVGRDYYGVFP 529
Query: 316 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAH 375
LRGK+LNV + + N+EIQ + + +G K + LRY ++I+TD D DG+H
Sbjct: 530 LRGKLLNVREASHSQILNNKEIQAIKKIMGFTHKKTYTDVKGLRYGHLMIMTDQDHDGSH 589
Query: 376 IRTLLLTFFYR-YQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNAL 434
I+ L++ + Y L G + + P+ K RG QVQ Y E + K + +
Sbjct: 590 IKGLIINYLESSYPSLLQIPGFLIQFITPIIKCTRGNQVQAFYTLPEYEYWKEANNNGRG 649
Query: 435 YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 494
+ I+ +KGLG + ++ + R +K +A ++ + + D RKE ++
Sbjct: 650 WKIKYYKGLGTSDHDDM-KSYFSDLDRHMKYFHAMQEKDAELIEMAFAKKKADVRKEWLR 708
Query: 495 NAANLVNLDH 504
+ +D+
Sbjct: 709 TYRPGIYMDY 718
>UNIPROTKB|O42130 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000819
"sister chromatid segregation" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS;IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISS;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=ISS;IBA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS] [GO:0006974 "response to DNA damage
stimulus" evidence=ISS] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISS] [GO:0006266 "DNA ligation"
evidence=ISS] [GO:0030263 "apoptotic chromosome condensation"
evidence=ISS] [GO:0008144 "drug binding" evidence=ISS] [GO:0003677
"DNA binding" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005654 GO:GO:0000287 GO:GO:0008144
GO:GO:0006974 GO:GO:0006261 GO:GO:0008301 GO:GO:0043065
GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0006266
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0009330 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
EMBL:AB007445 IPI:IPI00822514 RefSeq:NP_990122.1 UniGene:Gga.2010
ProteinModelPortal:O42130 SMR:O42130 STRING:O42130 GeneID:395570
KEGG:gga:395570 CTD:7153 HOGENOM:HOG000216693 HOVERGEN:HBG052998
NextBio:20815644 Uniprot:O42130
Length = 1553
Score = 245 (91.3 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 72/227 (31%), Positives = 112/227 (49%)
Query: 279 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 333
D S + + + EGDSA G GRD+ + PLRGK+LNV + +
Sbjct: 447 DAGSKNSIDCTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKMLNVREASHKQIME 504
Query: 334 NEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKT 390
N EI N+I+ +GL K ED + ++LRY KI+I+TD D DG+HI+ LL+ F + +
Sbjct: 505 NAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPS 564
Query: 391 LFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQ 450
L + + P+ KV + K+ Y E ++ KSS + + I+ +KGLG +
Sbjct: 565 LLRHNFLEEFITPIIKVSKNKEEIPFYSIPEFEEWKSSTQNYNSWKIKYYKGLGTSTSKE 624
Query: 451 LWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRKELIQN 495
E + + + K ED A + FS +V+ RKE + N
Sbjct: 625 AKEYFADMARHRIGFKYSGPEDDAAITLAFSK---KKVEERKEWLTN 668
Score = 81 (33.6 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 137 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 195
+ + NSI T GG H++ V + T+ ++ + KK+K + + V+ + ++
Sbjct: 312 VSFVNSIATTKGGRHVDYVADQIVTKLIDVVKKKNKN----GVGVKPFQVKNHMWIFVNS 367
Query: 196 RVPNPEFEGQTKTRL 210
+ NP F+ QTK +
Sbjct: 368 LIENPTFDSQTKENM 382
>UNIPROTKB|F1M7A0 [details] [associations]
symbol:Top2a "DNA topoisomerase 2" species:10116 "Rattus
norvegicus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0005654
GO:GO:0005730 GO:GO:0005814 GO:GO:0008144 GO:GO:0045944
GO:GO:0003682 GO:GO:0040016 GO:GO:0006974 GO:GO:0043065
GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0000793
GO:GO:0006266 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GO:GO:0045870 GeneTree:ENSGT00390000016222
IPI:IPI00562522 Ensembl:ENSRNOT00000050725 ArrayExpress:F1M7A0
Uniprot:F1M7A0
Length = 1528
Score = 270 (100.1 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 77/228 (33%), Positives = 114/228 (50%)
Query: 279 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 333
D S E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 445 DAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 502
Query: 334 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 389
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 503 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 561
Query: 390 TLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPV 449
+L + + P+ KV + KQ Y E ++ KS+ P++ + ++ +KGLG
Sbjct: 562 SLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSANPNHKKWKVKYYKGLGTSTSK 621
Query: 450 QLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRKELIQN 495
+ E N ++ + K ED A ++ FS +VD RKE + N
Sbjct: 622 EAKEYFANMKRHRIQFKYSGPEDDAAISLAFSK---KQVDDRKEWLTN 666
Score = 53 (23.7 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 137 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKT-VKDKDISLSGEHVR 186
+ + NSI T GG H++ V + ++ ++ + KK+K V K L G H++
Sbjct: 310 ISFVNSIATSKGGRHVDYVADQIVSKLVDVVKKKNKGGVAVKAHQLPG-HIQ 360
>UNIPROTKB|F1NZF0 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 IPI:IPI00822514 GeneTree:ENSGT00390000016222
EMBL:AADN02068749 Ensembl:ENSGALT00000040062 Uniprot:F1NZF0
Length = 1553
Score = 244 (91.0 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 76/245 (31%), Positives = 121/245 (49%)
Query: 266 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 315
S ++ + + G KL D + + S + + EGDSA G GRD+ + P
Sbjct: 429 SAVKHTKIKGVPKLDDANDAGNKNSIDCTLILTEGDSAKTLAVSGLGVVGRDK--YGVFP 486
Query: 316 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 372
LRGK+LNV + +N EI N+I+ +GL K ED + ++LRY KI+I+TD D D
Sbjct: 487 LRGKMLNVREASHKQIMENAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMIMTDQDQD 546
Query: 373 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 432
G+HI+ LL+ F + +L + + P+ KV + K+ Y E ++ KSS +
Sbjct: 547 GSHIKGLLINFIHHNWPSLLRHNFLEEFITPIIKVSKNKEEIPFYSIPEFEEWKSSTQNY 606
Query: 433 ALYSIQRFKGLGEMMPVQLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRK 490
+ I+ +KGLG + E + + + K ED A + FS +V+ RK
Sbjct: 607 NSWKIKYYKGLGTSTSKEAKEYFADMARHRIGFKYSGPEDDAAITLAFSK---KKVEERK 663
Query: 491 ELIQN 495
E + N
Sbjct: 664 EWLTN 668
Score = 81 (33.6 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 137 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 195
+ + NSI T GG H++ V + T+ ++ + KK+K + + V+ + ++
Sbjct: 312 VSFVNSIATTKGGRHVDYVADQIVTKLIDVVKKKNKN----GVGVKPFQVKNHMWIFVNS 367
Query: 196 RVPNPEFEGQTKTRL 210
+ NP F+ QTK +
Sbjct: 368 LIENPTFDSQTKENM 382
>UNIPROTKB|E9PTY5 [details] [associations]
symbol:Top2a "DNA topoisomerase 2" species:10116 "Rattus
norvegicus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 IPI:IPI00193944 Ensembl:ENSRNOT00000044306
ArrayExpress:E9PTY5 Uniprot:E9PTY5
Length = 1526
Score = 270 (100.1 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 77/228 (33%), Positives = 114/228 (50%)
Query: 279 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 333
D S E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 445 DAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 502
Query: 334 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 389
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 503 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 561
Query: 390 TLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPV 449
+L + + P+ KV + KQ Y E ++ KS+ P++ + ++ +KGLG
Sbjct: 562 SLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSANPNHKKWKVKYYKGLGTSTSK 621
Query: 450 QLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRKELIQN 495
+ E N ++ + K ED A ++ FS +VD RKE + N
Sbjct: 622 EAKEYFANMKRHRIQFKYSGPEDDAAISLAFSK---KQVDDRKEWLTN 666
Score = 52 (23.4 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 137 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSK 171
+ + NSI T GG H++ V + ++ ++ + KK+K
Sbjct: 310 ISFVNSIATSKGGRHVDYVADQIVSKLVDVVKKKNK 345
>WB|WBGene00010785 [details] [associations]
symbol:top-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0009792 GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222 EMBL:Z49069
EMBL:Z70213 PIR:T23620 RefSeq:NP_496536.1 ProteinModelPortal:Q23670
SMR:Q23670 DIP:DIP-27416N IntAct:Q23670 MINT:MINT-227249
STRING:Q23670 PaxDb:Q23670 EnsemblMetazoa:K12D12.1 GeneID:174825
KEGG:cel:CELE_K12D12.1 CTD:174825 WormBase:K12D12.1
InParanoid:Q23670 OMA:ADNKQND NextBio:885666 Uniprot:Q23670
Length = 1520
Score = 229 (85.7 bits), Expect = 8.5e-20, Sum P(2) = 8.5e-20
Identities = 67/241 (27%), Positives = 117/241 (48%)
Query: 266 SVLRSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILP 315
S ++S L G KL D + + S+ + + EGDSA G + GRD+ + P
Sbjct: 463 SKTKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDK--YGVFP 520
Query: 316 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG-----EDFKKEALRYHKIIILTDAD 370
LRGK+LNV + + N E+ +I+ LGL K +DFK LRY K++++ D D
Sbjct: 521 LRGKLLNVREGNMKQIADNAEVNAMIKILGLQYKKKYETEDDFK--TLRYGKLMVMADQD 578
Query: 371 VDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFP 430
DG+HI+ L++ F + + +L + + P+ K +GK+ Y E + + +
Sbjct: 579 QDGSHIKGLVINFIHHFWPSLIQRNFVEEFITPIVKATKGKEEVSFYSLPEYSEWRMNTD 638
Query: 431 SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRK 490
+ Y I+ +KGLG + E L+ + ++ A + N V + +++ RK
Sbjct: 639 NWKSYKIKYYKGLGTSTSKEAKEYFLDMVRHRIR-FKYNGADDDNAVDMAFSKKKIEERK 697
Query: 491 E 491
+
Sbjct: 698 D 698
Score = 92 (37.4 bits), Expect = 8.5e-20, Sum P(2) = 8.5e-20
Identities = 43/189 (22%), Positives = 84/189 (44%)
Query: 23 VDSKDRQGTRIRFWPDKQVFTTAIQFDH--NTIAGRIRELAFLNPKLTIALRKEDSDPEK 80
V S D T+I F PD F D + +A R ++A + + + L + P K
Sbjct: 242 VKSTDEDFTKITFSPDLAKFKMKELDDDICHLMARRAYDVAGSSKGVAVFLNGKRI-PIK 300
Query: 81 NQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYA 140
+ +Y ++ Y N + +PL + + + D + LAL + + +
Sbjct: 301 G-FEDY-----VQMYTSQFNNEGEPLK--IAYEQVGDRWQVALALS--EKGFQQ--VSFV 348
Query: 141 NSIRTIDGGTHIEGVKASLT-RTLNSLGKK-SKTVKDKDISLSGEHVREGLTCIISVRVP 198
NSI T GG H++ V + + ++S+ +K +KT +++ ++ + ++ +
Sbjct: 349 NSIATTKGGRHVDYVADQMVAKFIDSIKRKLTKT----SMNIKPFQIKNHMWVFVNCLIE 404
Query: 199 NPEFEGQTK 207
NP F+ QTK
Sbjct: 405 NPTFDSQTK 413
>UNIPROTKB|Q23670 [details] [associations]
symbol:K12D12.1 "Probable DNA topoisomerase 2" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0009792 GO:GO:0006261 GO:GO:0000910
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222 EMBL:Z49069
EMBL:Z70213 PIR:T23620 RefSeq:NP_496536.1 ProteinModelPortal:Q23670
SMR:Q23670 DIP:DIP-27416N IntAct:Q23670 MINT:MINT-227249
STRING:Q23670 PaxDb:Q23670 EnsemblMetazoa:K12D12.1 GeneID:174825
KEGG:cel:CELE_K12D12.1 CTD:174825 WormBase:K12D12.1
InParanoid:Q23670 OMA:ADNKQND NextBio:885666 Uniprot:Q23670
Length = 1520
Score = 229 (85.7 bits), Expect = 8.5e-20, Sum P(2) = 8.5e-20
Identities = 67/241 (27%), Positives = 117/241 (48%)
Query: 266 SVLRSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILP 315
S ++S L G KL D + + S+ + + EGDSA G + GRD+ + P
Sbjct: 463 SKTKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDK--YGVFP 520
Query: 316 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG-----EDFKKEALRYHKIIILTDAD 370
LRGK+LNV + + N E+ +I+ LGL K +DFK LRY K++++ D D
Sbjct: 521 LRGKLLNVREGNMKQIADNAEVNAMIKILGLQYKKKYETEDDFK--TLRYGKLMVMADQD 578
Query: 371 VDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFP 430
DG+HI+ L++ F + + +L + + P+ K +GK+ Y E + + +
Sbjct: 579 QDGSHIKGLVINFIHHFWPSLIQRNFVEEFITPIVKATKGKEEVSFYSLPEYSEWRMNTD 638
Query: 431 SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRK 490
+ Y I+ +KGLG + E L+ + ++ A + N V + +++ RK
Sbjct: 639 NWKSYKIKYYKGLGTSTSKEAKEYFLDMVRHRIR-FKYNGADDDNAVDMAFSKKKIEERK 697
Query: 491 E 491
+
Sbjct: 698 D 698
Score = 92 (37.4 bits), Expect = 8.5e-20, Sum P(2) = 8.5e-20
Identities = 43/189 (22%), Positives = 84/189 (44%)
Query: 23 VDSKDRQGTRIRFWPDKQVFTTAIQFDH--NTIAGRIRELAFLNPKLTIALRKEDSDPEK 80
V S D T+I F PD F D + +A R ++A + + + L + P K
Sbjct: 242 VKSTDEDFTKITFSPDLAKFKMKELDDDICHLMARRAYDVAGSSKGVAVFLNGKRI-PIK 300
Query: 81 NQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYA 140
+ +Y ++ Y N + +PL + + + D + LAL + + +
Sbjct: 301 G-FEDY-----VQMYTSQFNNEGEPLK--IAYEQVGDRWQVALALS--EKGFQQ--VSFV 348
Query: 141 NSIRTIDGGTHIEGVKASLT-RTLNSLGKK-SKTVKDKDISLSGEHVREGLTCIISVRVP 198
NSI T GG H++ V + + ++S+ +K +KT +++ ++ + ++ +
Sbjct: 349 NSIATTKGGRHVDYVADQMVAKFIDSIKRKLTKT----SMNIKPFQIKNHMWVFVNCLIE 404
Query: 199 NPEFEGQTK 207
NP F+ QTK
Sbjct: 405 NPTFDSQTK 413
>UNIPROTKB|A8JD08 [details] [associations]
symbol:TOP2 "DNA topoisomerase 2" species:3055
"Chlamydomonas reinhardtii" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 KO:K03164 EMBL:DS496159
RefSeq:XP_001700298.1 ProteinModelPortal:A8JD08 STRING:A8JD08
EnsemblPlants:EDO98265 GeneID:5725848 KEGG:cre:CHLREDRAFT_38019
ProtClustDB:PLN03128 BioCyc:CHLAMY:CHLREDRAFT_38019-MONOMER
Uniprot:A8JD08
Length = 1167
Score = 265 (98.3 bits), Expect = 1.8e-19, P = 1.8e-19
Identities = 94/365 (25%), Positives = 155/365 (42%)
Query: 137 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVR 196
+ + NSI T GGTH++ + + + ++ K SK K ++ V+ L ++
Sbjct: 311 VSFVNSISTQKGGTHVDYIVNQVVK--HATEKLSKKTT-KTAAIKPAMVKNHLWVFLNCY 367
Query: 197 VPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXX 256
V NP F+ QTK L +R S E L+ +
Sbjct: 368 VENPAFDSQTKETL---TLRATAFGSKCELPVPLLD--KVLKAGLSDSIIRFAEFKSQKE 422
Query: 257 XXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD---RRFQAI 313
++S L + D E + + EGDSA A G R +
Sbjct: 423 LKKGDGTKRSRLHGITKLDDANDAGGPRSRECTLILTEGDSAKALAISGLGVVGRDHYGV 482
Query: 314 LPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE-ALRYHKIIILTDADVD 372
PLRGK+LNV A + N EIQN+ + +GL G+ ++ +LRY ++I+TD D D
Sbjct: 483 FPLRGKLLNVREASAAQIAANAEIQNIKQIMGLQ-HGKVYENTTSLRYGHLMIMTDQDHD 541
Query: 373 GAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPS 431
G+HI+ L++ F + + +L G + + P+ K RG+ + Y E + K S +
Sbjct: 542 GSHIKGLIMNFLHSFFPSLLRIPGFLLEFITPIVKARRGRDTKVFYTMPEYEAWKESLGN 601
Query: 432 -NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRK 490
+ I+ +KGLG + E + K+ V E + + + + RVD RK
Sbjct: 602 ATTAWDIKYYKGLGTSTKEEAQEYFSRLDLHR-KEFVWEGDEDGDSIELAFSKKRVDDRK 660
Query: 491 ELIQN 495
E + N
Sbjct: 661 EWLSN 665
>UNIPROTKB|Q755V8 [details] [associations]
symbol:AER410W "DNA topoisomerase 2" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AE016818 GenomeReviews:AE016818_GR GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:AKEYFQD OrthoDB:EOG4XPTPZ
RefSeq:NP_985265.1 ProteinModelPortal:Q755V8 SMR:Q755V8
STRING:Q755V8 EnsemblFungi:AAS53089 GeneID:4621483
KEGG:ago:AGOS_AER410W PhylomeDB:Q755V8 Uniprot:Q755V8
Length = 1427
Score = 261 (96.9 bits), Expect = 6.7e-19, P = 6.7e-19
Identities = 140/537 (26%), Positives = 223/537 (41%)
Query: 5 QKYSRGKPVTTLTCHVLPVDS--KDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
QKY + CH + S K T+I F PD Q F + D I G +R +
Sbjct: 170 QKYVQKWESNMNVCHPPKITSYKKGPSYTKITFKPDLQRFGMEVLDDD--ILGVMRRRVY 227
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKD-----VD 117
+ ++R + F +E Y++ L +KK L D G + V+
Sbjct: 228 ---DINGSVRDVNVSLNGKSLKIRNFKSYMELYMRSL--EKKRLIDS-GMAPESASEKVN 281
Query: 118 GITI---DLALQW-CSDAYSDT---MLGYANSIRTIDGGTHIEGVKASLTRTLNSL-GKK 169
TI + +W A SD + + NSI T GGTH+ + + + ++ L KK
Sbjct: 282 APTILYEKVNDRWELGFAVSDISFQQISFVNSIATTSGGTHVNYLTDQIVKKVSELLSKK 341
Query: 170 SKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTE 229
KTVK I R + I+ + NP F QTK +L V+++ ++
Sbjct: 342 KKTVKPFQI-------RNNIFIFINCLIENPAFTSQTKEQLTT---------RVRDFGSK 385
Query: 230 YLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPG--KLADCSSTTPEE 287
E+ D ++Q R + + KL D + +E
Sbjct: 386 -CEVSSDFINKIMKTELATKIFEIADENAAKLLKQTDGTRKNRITDYPKLEDANKAGTKE 444
Query: 288 SE---IFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 339
+ + EGDSA G + GRD + PL+GKILNV + KN EIQ
Sbjct: 445 GHKCTLVLTEGDSALSLAVAGLSVVGRD--YYGCFPLKGKILNVRDASVEQIRKNTEIQA 502
Query: 340 LIRALGLGVKG----EDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-E 394
+ + +GL K ED K LRY ++I+TD D DG+HI+ LL+ FF L D
Sbjct: 503 IKKIMGLQHKKQYTIEDMK--TLRYGHVMIMTDQDHDGSHIKGLLINFFESTFPGLLDIP 560
Query: 395 GCIYVGVPPLYKV---ERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLG--EMMPV 449
G + + P+ KV + KQV Y+ + +K + + ++ + +KGLG
Sbjct: 561 GFLIEFITPIMKVTILKPKKQVIPFYNLPDYEKWRDTESHKYVWKTKYYKGLGTSSFQEA 620
Query: 450 QLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD-HL 505
+ + + L+ + L +D++ ++ FS + D RKE ++ LD HL
Sbjct: 621 REYFSALDVHIKKFHSLNPDDSSLIDLAFSK---KKADDRKEWLRQYEPGTVLDPHL 674
>CGD|CAL0005199 [details] [associations]
symbol:TOP2 species:5476 "Candida albicans" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IGI;ISS]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0097047 "DNA
replication termination region" evidence=IEA] [GO:0000795
"synaptonemal complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0006406
"mRNA export from nucleus" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0044774 "mitotic DNA
integrity checkpoint" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IEA] [GO:0097046
"replication fork progression beyond termination site"
evidence=IEA] [GO:0031055 "chromatin remodeling at centromere"
evidence=IEA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0000019 "regulation of mitotic
recombination" evidence=IEA] [GO:0042790 "transcription of nuclear
large rRNA transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 SMART:SM00387 SMART:SM00433
SMART:SM00434 CGD:CAL0005199 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 GO:GO:0036244 GO:GO:0036178
GO:GO:0009267 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0036170
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 EMBL:AACQ01000084 EMBL:AACQ01000083 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 RefSeq:XP_715530.1 RefSeq:XP_715586.1
ProteinModelPortal:Q5A1E7 SMR:Q5A1E7 STRING:Q5A1E7 GeneID:3642722
GeneID:3642777 KEGG:cal:CaO19.10391 KEGG:cal:CaO19.2873
Uniprot:Q5A1E7
Length = 1461
Score = 255 (94.8 bits), Expect = 3.2e-18, P = 3.2e-18
Identities = 105/397 (26%), Positives = 168/397 (42%)
Query: 129 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL-NSLGKKSKTVKDKDISLSGEHVRE 187
SD S + + NSI T GGTH++ V + L +L KK K K + + + VR+
Sbjct: 344 SDG-SFNQVSFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEKG--KKKLMIKPQEVRD 400
Query: 188 GLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXX 247
+ I+ + NP F QTK +L KV ++ + ++
Sbjct: 401 NMFLFINCLIENPAFTSQTKEQL----TTKVSQFGGKDKFVA----NDNLINRILKTSIV 452
Query: 248 XXXXXXXXXXXXXXVRQKSVLRSSSLPGK--LADCSSTTPEESE---IFIVEGDSAGGSA 302
+++ R S + G+ L D + ++ + + EG SA A
Sbjct: 453 DKIRAIANANEDKALQKADGSRKSRIKGQVNLVDANKAGTKDGHNCTLILTEGLSAMNLA 512
Query: 303 KQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK----GEDFKK 355
G R + PLRGK+LNV + KN EI +L + +GL K E+ K
Sbjct: 513 VAGLSVVGRDYYGCFPLRGKLLNVREASADQISKNAEINSLKQIIGLQHKKVYTAENIK- 571
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKVE------ 408
+LRY I+I+TD D DG+HI+ L++ F L D G + + P+ KV
Sbjct: 572 -SLRYGHIMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKARGA 630
Query: 409 RGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWE--TTLNPEQRMLKQL 466
GK+V Y E + + + ++ + +KGLG P++ E T L+ + L
Sbjct: 631 GGKRVIPFYTMPEFEHWRDTEGKQCRWTQKYYKGLGTSTPMEAREYFTALDRHLKRFHAL 690
Query: 467 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
ED ++ FS + D RKE +Q +LD
Sbjct: 691 QGEDKDYIDLAFSK---KKADERKEWLQGFLPGTHLD 724
>UNIPROTKB|Q5A1E7 [details] [associations]
symbol:TOP2 "DNA topoisomerase 2" species:237561 "Candida
albicans SC5314" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IGI] [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 SMART:SM00387 SMART:SM00433
SMART:SM00434 CGD:CAL0005199 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 GO:GO:0036244 GO:GO:0036178
GO:GO:0009267 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0036170
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 EMBL:AACQ01000084 EMBL:AACQ01000083 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 RefSeq:XP_715530.1 RefSeq:XP_715586.1
ProteinModelPortal:Q5A1E7 SMR:Q5A1E7 STRING:Q5A1E7 GeneID:3642722
GeneID:3642777 KEGG:cal:CaO19.10391 KEGG:cal:CaO19.2873
Uniprot:Q5A1E7
Length = 1461
Score = 255 (94.8 bits), Expect = 3.2e-18, P = 3.2e-18
Identities = 105/397 (26%), Positives = 168/397 (42%)
Query: 129 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL-NSLGKKSKTVKDKDISLSGEHVRE 187
SD S + + NSI T GGTH++ V + L +L KK K K + + + VR+
Sbjct: 344 SDG-SFNQVSFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEKG--KKKLMIKPQEVRD 400
Query: 188 GLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXX 247
+ I+ + NP F QTK +L KV ++ + ++
Sbjct: 401 NMFLFINCLIENPAFTSQTKEQL----TTKVSQFGGKDKFVA----NDNLINRILKTSIV 452
Query: 248 XXXXXXXXXXXXXXVRQKSVLRSSSLPGK--LADCSSTTPEESE---IFIVEGDSAGGSA 302
+++ R S + G+ L D + ++ + + EG SA A
Sbjct: 453 DKIRAIANANEDKALQKADGSRKSRIKGQVNLVDANKAGTKDGHNCTLILTEGLSAMNLA 512
Query: 303 KQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK----GEDFKK 355
G R + PLRGK+LNV + KN EI +L + +GL K E+ K
Sbjct: 513 VAGLSVVGRDYYGCFPLRGKLLNVREASADQISKNAEINSLKQIIGLQHKKVYTAENIK- 571
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKVE------ 408
+LRY I+I+TD D DG+HI+ L++ F L D G + + P+ KV
Sbjct: 572 -SLRYGHIMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKARGA 630
Query: 409 RGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWE--TTLNPEQRMLKQL 466
GK+V Y E + + + ++ + +KGLG P++ E T L+ + L
Sbjct: 631 GGKRVIPFYTMPEFEHWRDTEGKQCRWTQKYYKGLGTSTPMEAREYFTALDRHLKRFHAL 690
Query: 467 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
ED ++ FS + D RKE +Q +LD
Sbjct: 691 QGEDKDYIDLAFSK---KKADERKEWLQGFLPGTHLD 724
>UNIPROTKB|F1P2F2 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0040016 "embryonic cleavage" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0042826 "histone
deacetylase binding" evidence=IEA] [GO:0043065 "positive regulation
of apoptotic process" evidence=IEA] [GO:0043130 "ubiquitin binding"
evidence=IEA] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005814 "centriole" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0006266 "DNA
ligation" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=IEA]
[GO:0030263 "apoptotic chromosome condensation" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0007059 GO:GO:0005654 GO:GO:0005730
GO:GO:0005814 GO:GO:0008144 GO:GO:0045944 GO:GO:0003682
GO:GO:0006974 GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10
SUPFAM:SSF55874 GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GO:GO:0045870
GeneTree:ENSGT00390000016222 EMBL:AADN02068749 IPI:IPI00571557
Ensembl:ENSGALT00000006249 Uniprot:F1P2F2
Length = 1586
Score = 244 (91.0 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 76/245 (31%), Positives = 121/245 (49%)
Query: 266 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 315
S ++ + + G KL D + + S + + EGDSA G GRD+ + P
Sbjct: 450 SAVKHTKIKGVPKLDDANDAGNKNSIDCTLILTEGDSAKTLAVSGLGVVGRDK--YGVFP 507
Query: 316 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 372
LRGK+LNV + +N EI N+I+ +GL K ED + ++LRY KI+I+TD D D
Sbjct: 508 LRGKMLNVREASHKQIMENAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMIMTDQDQD 567
Query: 373 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 432
G+HI+ LL+ F + +L + + P+ KV + K+ Y E ++ KSS +
Sbjct: 568 GSHIKGLLINFIHHNWPSLLRHNFLEEFITPIIKVSKNKEEIPFYSIPEFEEWKSSTQNY 627
Query: 433 ALYSIQRFKGLGEMMPVQLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRK 490
+ I+ +KGLG + E + + + K ED A + FS +V+ RK
Sbjct: 628 NSWKIKYYKGLGTSTSKEAKEYFADMARHRIGFKYSGPEDDAAITLAFSK---KKVEERK 684
Query: 491 ELIQN 495
E + N
Sbjct: 685 EWLTN 689
Score = 61 (26.5 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 148 GGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQT 206
GG H++ V + T+ ++ + KK+K + + V+ + ++ + NP F+ QT
Sbjct: 344 GGRHVDYVADQIVTKLIDVVKKKNKN----GVGVKPFQVKNHMWIFVNSLIENPTFDSQT 399
Query: 207 KTRL 210
K +
Sbjct: 400 KENM 403
>SGD|S000005032 [details] [associations]
symbol:TOP2 "Topoisomerase II, relieves torsional strain in
DNA by cleaving and re" species:4932 "Saccharomyces cerevisiae"
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IMP]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA;IDA]
[GO:0006333 "chromatin assembly or disassembly" evidence=IMP]
[GO:0006265 "DNA topological change" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000795 "synaptonemal complex"
evidence=IDA] [GO:0000019 "regulation of mitotic recombination"
evidence=IMP] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006259
"DNA metabolic process" evidence=IEA] [GO:0031055 "chromatin
remodeling at centromere" evidence=IMP] [GO:0097046 "replication
fork progression beyond termination site" evidence=IMP] [GO:0097047
"DNA replication termination region" evidence=IPI]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
SGD:S000005032 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 EMBL:BK006947 GO:GO:0006333 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0009330 GO:GO:0070683
GO:GO:0006271 GO:GO:0000712 EMBL:X89016 GO:GO:0000795 EMBL:AF458969
EMBL:AF458971 EMBL:AF458972 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 GO:GO:0031055
GO:GO:0000019 KO:K02952 GO:GO:0097046 RefSeq:NP_014311.3
GeneID:855636 KEGG:sce:YNL088W KO:K03164 RefSeq:NP_014318.3
GeneID:855643 KEGG:sce:YNL081C HOGENOM:HOG000216693
GeneTree:ENSGT00390000016222 OMA:AKEYFQD OrthoDB:EOG4XPTPZ
EMBL:M13814 EMBL:Z71364 PIR:S57534 PDB:1BGW PDB:1BJT PDB:1PVG
PDB:1QZR PDB:2RGR PDB:3L4J PDB:3L4K PDB:4GFH PDBsum:1BGW
PDBsum:1BJT PDBsum:1PVG PDBsum:1QZR PDBsum:2RGR PDBsum:3L4J
PDBsum:3L4K PDBsum:4GFH DisProt:DP00076 ProteinModelPortal:P06786
SMR:P06786 DIP:DIP-2300N IntAct:P06786 MINT:MINT-495862
STRING:P06786 PaxDb:P06786 PeptideAtlas:P06786 EnsemblFungi:YNL088W
CYGD:YNL088w ChEMBL:CHEMBL5290 EvolutionaryTrace:P06786
NextBio:979854 ArrayExpress:P06786 Genevestigator:P06786
GermOnline:YNL088W GO:GO:0097047 Uniprot:P06786
Length = 1428
Score = 254 (94.5 bits), Expect = 4.0e-18, P = 4.0e-18
Identities = 130/519 (25%), Positives = 218/519 (42%)
Query: 5 QKYSRGKPVTTLTCHVLPVDS--KDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
QKY + CH + S K T++ F PD F + D N I G +R +
Sbjct: 167 QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMK-ELD-NDILGVMRRRVY 224
Query: 63 -LNPKLT-IALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGI 119
+N + I + + + Y +E Y++ L ++ + G K D+ I
Sbjct: 225 DINGSVRDINVYLNGKSLKIRNFKNY-----VELYLKSLEKKRQLDNGEDGAAKSDIPTI 279
Query: 120 TID-LALQW-CSDAYSDT---MLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK 174
+ + +W + A SD + + NSI T GGTH+ + + + ++ + KK K
Sbjct: 280 LYERINNRWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITDQIVKKISEILKKKKKKS 339
Query: 175 DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ-EYLTEYLE- 232
K ++ + I+ + NP F QTK +L +V D + E EY+
Sbjct: 340 VKSFQ-----IKNNMFIFINCLIENPAFTSQTKEQL----TTRVKDFGSRCEIPLEYINK 390
Query: 233 -LHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEES--- 288
+ D+ +KS R ++ P KL D + +E
Sbjct: 391 IMKTDLATRMFEIADANEENALKKSDGT----RKS--RITNYP-KLEDANKAGTKEGYKC 443
Query: 289 EIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 343
+ + EGDSA G A GRD + PLRGK+LNV + KN EIQ + +
Sbjct: 444 TLVLTEGDSALSLAVAGLAVVGRD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKKI 501
Query: 344 LGLG--VKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVG 400
+GL K ED K +LRY ++I+TD D DG+HI+ L++ F L D +G +
Sbjct: 502 MGLQHRKKYEDTK--SLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEF 559
Query: 401 VPPLYKVERGKQVQYC---YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWE--TT 455
+ P+ KV K + Y+ + +K + + + +KGLG + ++ E +
Sbjct: 560 ITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSN 619
Query: 456 LNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 494
L+ ++ L D ++ FS + D RKE ++
Sbjct: 620 LDRHLKIFHSLQGNDKDYIDLAFSK---KKADDRKEWLR 655
>FB|FBgn0003732 [details] [associations]
symbol:Top2 "Topoisomerase 2" species:7227 "Drosophila
melanogaster" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=NAS;IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0016590 "ACF complex" evidence=IDA] [GO:0008623 "CHRAC"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP;TAS] [GO:0007126
"meiosis" evidence=TAS] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005694 "chromosome"
evidence=IDA] [GO:0051310 "metaphase plate congression"
evidence=IDA] [GO:0000819 "sister chromatid segregation"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000182
"rDNA binding" evidence=IDA] [GO:0003696 "satellite DNA binding"
evidence=IDA] [GO:0006342 "chromatin silencing" evidence=IDA]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0009295 "nucleoid" evidence=IBA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IBA] [GO:0044774 "mitotic DNA integrity
checkpoint" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0007095 GO:GO:0007052 EMBL:AE014134 GO:GO:0003729
GO:GO:0006261 GO:GO:0006342 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0007076 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0006312 GO:GO:0008623 GO:GO:0070683
GO:GO:0000712 GO:GO:0003696 GO:GO:0051310 GO:GO:0000182
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 GO:GO:0000400 KO:K03164
GeneTree:ENSGT00390000016222 ChiTaRS:TOP2A OMA:AKEYFQD EMBL:X61209
PIR:S02160 RefSeq:NP_476760.1 UniGene:Dm.22886
ProteinModelPortal:P15348 SMR:P15348 STRING:P15348 PaxDb:P15348
PRIDE:P15348 EnsemblMetazoa:FBtr0081287 EnsemblMetazoa:FBtr0332320
GeneID:35225 KEGG:dme:Dmel_CG10223 CTD:35225 FlyBase:FBgn0003732
InParanoid:P15348 OrthoDB:EOG4HQC04 PhylomeDB:P15348
BindingDB:P15348 ChEMBL:CHEMBL2671 GenomeRNAi:35225 NextBio:792468
Bgee:P15348 GermOnline:CG10223 Uniprot:P15348
Length = 1447
Score = 212 (79.7 bits), Expect = 9.6e-18, Sum P(2) = 9.6e-18
Identities = 58/187 (31%), Positives = 94/187 (50%)
Query: 269 RSSSLPG--KLADCSSTTPEES---EIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKI 320
+SS + G KL D + + S + + EGDSA A G R + PLRGK+
Sbjct: 411 KSSKIKGIPKLEDANEAGGKNSIKCTLILTEGDSAKSLAVSGLGVIGRDLYGVFPLRGKL 470
Query: 321 LNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE---ALRYHKIIILTDADVDGAHIR 377
LNV + + +N EI NL + +GL K + ++ LRY K++I+TD D DG+HI+
Sbjct: 471 LNVREANFKQLSENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIK 530
Query: 378 TLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSI 437
LL+ F + L + + P+ K + + Y E ++ K+ ++ Y+I
Sbjct: 531 GLLINFIHTNWPELLRLPFLEEFITPIVKATKKNEELSFYSLPEFEEWKNDTANHHTYNI 590
Query: 438 QRFKGLG 444
+ +KGLG
Sbjct: 591 KYYKGLG 597
Score = 90 (36.7 bits), Expect = 9.6e-18, Sum P(2) = 9.6e-18
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 137 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGEHVREGLTCIISV 195
+ + NSI T GG H++ V +L + L + KK K+K I++ VR L ++
Sbjct: 292 VSFVNSIATYKGGRHVDHVVDNLIKQLLEVLKK----KNKGGINIKPFQVRNHLWVFVNC 347
Query: 196 RVPNPEFEGQTKTRL 210
+ NP F+ QTK +
Sbjct: 348 LIENPTFDSQTKENM 362
>ZFIN|ZDB-GENE-030131-2453 [details] [associations]
symbol:top2a "topoisomerase (DNA) II alpha"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0007059 "chromosome segregation" evidence=ISS;IMP] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0030261 "chromosome condensation" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0009295 "nucleoid" evidence=IBA] [GO:0031100 "organ
regeneration" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 ZFIN:ZDB-GENE-030131-2453
GO:GO:0005524 GO:GO:0031100 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 CTD:7153 HOVERGEN:HBG052998
EMBL:AY648832 IPI:IPI00488403 RefSeq:NP_001003834.1
UniGene:Dr.119089 UniGene:Dr.31760 ProteinModelPortal:Q6DRC7
SMR:Q6DRC7 STRING:Q6DRC7 GeneID:323733 KEGG:dre:323733
NextBio:20808410 Uniprot:Q6DRC7
Length = 1574
Score = 221 (82.9 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 62/192 (32%), Positives = 94/192 (48%)
Query: 266 SVLRSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILP 315
S ++ + + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 427 SAVKHTKIKGVPKLDDANDAGGKNSNSCTLILTEGDSAKTLAVSGLGVVGRDR--YGVFP 484
Query: 316 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK---GEDFKKEALRYHKIIILTDADVD 372
LRGK+LNV + +N EI N+I+ LGL K + ++LRY K++I+TD D D
Sbjct: 485 LRGKMLNVREASHKQIMENAEINNIIKILGLQYKKNYSDPESLKSLRYGKLMIMTDQDQD 544
Query: 373 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 432
G+HI+ LL+ F + +L + + P+ K KQ Y E + K S
Sbjct: 545 GSHIKGLLINFIHHNWPSLLRHNFLEEFITPIIKASNKKQEISFYSIPEFTEWKEKQSSI 604
Query: 433 ALYSIQRFKGLG 444
+ I+ +KGLG
Sbjct: 605 KSWKIKYYKGLG 616
Score = 67 (28.6 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 137 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 195
+ + NSI GG H + V + L + KK K+K +++ V+ + ++
Sbjct: 310 VSFVNSIDKNKGGRHTDYVADQIVSKLIEVVKK----KNKAGVAVKPFQVKNHMWLFVNC 365
Query: 196 RVPNPEFEGQTKTRL 210
+ NP F+ QTK +
Sbjct: 366 LIENPSFDSQTKENM 380
>UNIPROTKB|Q7S9W8 [details] [associations]
symbol:NCU06338 "DNA topoisomerase 2" species:367110
"Neurospora crassa OR74A" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00384 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 KO:K03164 HOGENOM:HOG000216693 OrthoDB:EOG4XPTPZ
EMBL:AABX02000026 RefSeq:XP_962372.2 UniGene:Ncr.23351
ProteinModelPortal:Q7S9W8 SMR:Q7S9W8 STRING:Q7S9W8
EnsemblFungi:EFNCRT00000006113 GeneID:3878536 KEGG:ncr:NCU06338
OMA:FFTLPQY Uniprot:Q7S9W8
Length = 1909
Score = 207 (77.9 bits), Expect = 4.5e-16, Sum P(2) = 4.5e-16
Identities = 71/235 (30%), Positives = 112/235 (47%)
Query: 286 EESEIFIVEGDSAGGSAKQGR---DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 342
+E + + EGDSA G A GR D + PLRGK+LNV + KN+E++N+ +
Sbjct: 546 QECTLILTEGDSARGLAVAGRAILDPNRIGVFPLRGKMLNVRDASADQILKNKEVENIKK 605
Query: 343 ALGL--GVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFY-RYQKTLFDEGCIYV 399
LGL G D K LRY ++I+ D D+DG+HI+ LL+ FF ++ L
Sbjct: 606 FLGLKHGKVYTDTKD--LRYGHLMIMADQDLDGSHIKGLLINFFECQFPSLLRIPNFFQE 663
Query: 400 GVPPLYKVERG------KQVQYCYDDAELKKVKSSFPSNAL--YSIQRFKGLGEMMP--V 449
+ P+ KV +G +++Q + + ++ K + N L + + KGLG
Sbjct: 664 FITPVVKVWQGPNPKKPQRLQGFFTLPQYEEWKEAH-RNELRRWKYKYLKGLGSSTTDDA 722
Query: 450 QLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDH 504
QL+ T LN + + E++ + FS + D RKE + LDH
Sbjct: 723 QLYFTNLNKHLKEFDVMTREESEMFELAFSK---KKADARKEWLAKCEPGTYLDH 774
Score = 82 (33.9 bits), Expect = 4.5e-16, Sum P(2) = 4.5e-16
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 129 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL-NSLGKKSKTVKDKDISLSGEHVRE 187
SD S + + N+I T GG+H+ + + L L KK K K L +V+
Sbjct: 399 SDG-SFQQVSFVNNIATTSGGSHVNYIADQIIEVLMKELQKK----KGKGHGLKTANVKN 453
Query: 188 GLTCIISVRVPNPEFEGQTKTRL 210
I+ + NP F QTK +L
Sbjct: 454 QFFIFINCLIDNPAFSSQTKEQL 476
Score = 37 (18.1 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 56 RIRELAFLNPKLTIALRKEDSDPEKN 81
++R+ ++ L+ A +K D D KN
Sbjct: 496 KVRQSEAIDNLLSFADKKRDKDLAKN 521
>DICTYBASE|DDB_G0270418 [details] [associations]
symbol:top2 "DNA topoisomerase II" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0006259 "DNA metabolic process"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0009295 "nucleoid"
evidence=IBA] [GO:0044774 "mitotic DNA integrity checkpoint"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 dictyBase:DDB_G0270418 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
ProtClustDB:PTZ00108 OMA:ADNKQND RefSeq:XP_646786.1 HSSP:P11388
ProteinModelPortal:Q55BP5 SMR:Q55BP5 STRING:Q55BP5 PRIDE:Q55BP5
EnsemblProtists:DDB0231510 GeneID:8617759 KEGG:ddi:DDB_G0270418
Uniprot:Q55BP5
Length = 1521
Score = 241 (89.9 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 89/367 (24%), Positives = 162/367 (44%)
Query: 137 LGYANSIRTIDGGTHIEGVKASLTRTLNS-LGKKSKTVKDKDISLSGEHVREGLTCIISV 195
+ + NSI T+ GGTH+ +++ + + KK+K D + H+ + C+I
Sbjct: 381 VSFVNSICTVKGGTHVTHALSNIVTAIQEQVNKKNKGSADIKPAFIKNHLSVFVNCLIE- 439
Query: 196 RVPNPEFEGQTKTRLGNPEVRKVVD--QSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXX 253
NP F+ QTK L + ++ + ++++ L+ +
Sbjct: 440 ---NPHFDSQTKETLTS-KISSFGSRCEPSEKFIKRVLDSKSGIVASILEFAQFKDQSAL 495
Query: 254 XXXXXXXXVRQKSVLRSSSLPGKLADCS---STTPEESEIFIVEGDSAGGSAKQGRD--- 307
+ K S+P KL D + T E+ + + EGDSA A G
Sbjct: 496 KRSTSSGGKKGKV-----SIP-KLDDANLAGGTKSEDCTLILTEGDSAKSLATAGISVVG 549
Query: 308 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA-LRYHKIIIL 366
+ PL+GK+LNV R + N+EI N++ LGL G+ ++ + LRY ++I+
Sbjct: 550 KDHYGAFPLKGKLLNV-RDQSTKVINNDEINNIVTILGLKY-GKVYETLSDLRYGHLMIM 607
Query: 367 TDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKVERGKQVQYC-YDDAELKK 424
TD D DG+HI+ L++ + + TL G + + P+ KV + Q Y E K
Sbjct: 608 TDQDHDGSHIKGLIINMVHHFWPTLLRMPGFLVEFITPIVKVFKNNQKPISFYTMPEFLK 667
Query: 425 VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA 484
+ + ++ + ++ +KGLG P + E + E+ + ++ A N+ + +
Sbjct: 668 WRET--NDKGWDVKYYKGLGTSTPGEGKEYFSDLERHKI-DFEWDEGANDNIELA-FSKS 723
Query: 485 RVDTRKE 491
R D RK+
Sbjct: 724 RADDRKK 730
Score = 39 (18.8 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 23 VDSKDRQGTRIRFWPDKQVFTTAIQF 48
+ S +RQ + W DK++ + F
Sbjct: 124 IGSTERQEEELWVWEDKRMVHRKVSF 149
>ASPGD|ASPL0000029372 [details] [associations]
symbol:top2 species:162425 "Emericella nidulans"
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IEA] [GO:0006325 "chromatin organization"
evidence=IEA] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0007076 "mitotic chromosome condensation" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418 SMART:SM00384
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261 EMBL:BN001305
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AACD01000094 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:ADNKQND OrthoDB:EOG4XPTPZ
RefSeq:XP_663010.1 ProteinModelPortal:Q5B224 SMR:Q5B224
STRING:Q5B224 EnsemblFungi:CADANIAT00003686 GeneID:2871696
KEGG:ani:AN5406.2 Uniprot:Q5B224
Length = 1709
Score = 187 (70.9 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 67/242 (27%), Positives = 110/242 (45%)
Query: 276 KLADCSSTTPEES---EIFIVEGDSAGGSAKQGR---DRRFQAILPLRGKILNVERKDEA 329
KL D + ++ + + EG+SA G A GR + PLRGK+LNV
Sbjct: 529 KLTDANRAGTKDGYKCTLILTEGESAKGLAMAGRAVVGADLFGVYPLRGKMLNVRDASFD 588
Query: 330 AMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFY-RYQ 388
+ KNEEIQ++ +GL K E + LRY ++I+TD D DG+HI+ LL+ F ++
Sbjct: 589 QISKNEEIQSIKNFMGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLINFLEAQFP 648
Query: 389 KTLFDEGCIYVGVPPLYKVERG------KQVQYCYDDAELKKVKSSFPSNALYSIQRFKG 442
L + + P+ KV +G KQ + + E K + + +KG
Sbjct: 649 SLLKIPEFLIEFITPIVKVWKGDIKDPTKQHSF-FTIQEYNAWKEKHGHERGWEHKYYKG 707
Query: 443 LGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNL 502
LG + E + + R LK+ + E ++ + +V+ RKE ++ +
Sbjct: 708 LGTSSTEEAQEYFRDLD-RHLKEFHVMQDKEHELIELAFSKKKVEERKEWLRQYNPDTFM 766
Query: 503 DH 504
DH
Sbjct: 767 DH 768
Score = 95 (38.5 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 129 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREG 188
SD S + + NSI T GGTH+ + + L+ KK+K K L +R
Sbjct: 394 SDG-SFKQVSFVNSIATTSGGTHVNYIADQIAGKLSESLKKNK--KGTGSILKPAQIRNY 450
Query: 189 LTCIISVRVPNPEFEGQTKTRLGNPEV----RKVVDQS 222
++ ++ NP F QTK +L + + ++D+S
Sbjct: 451 CFLFVNAKIVNPAFSSQTKEQLTTKQTQFGSKPILDES 488
>UNIPROTKB|Q5B224 [details] [associations]
symbol:AN5406.2 "DNA topoisomerase 2" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418 SMART:SM00384
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261 EMBL:BN001305
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AACD01000094 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:ADNKQND OrthoDB:EOG4XPTPZ
RefSeq:XP_663010.1 ProteinModelPortal:Q5B224 SMR:Q5B224
STRING:Q5B224 EnsemblFungi:CADANIAT00003686 GeneID:2871696
KEGG:ani:AN5406.2 Uniprot:Q5B224
Length = 1709
Score = 187 (70.9 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 67/242 (27%), Positives = 110/242 (45%)
Query: 276 KLADCSSTTPEES---EIFIVEGDSAGGSAKQGR---DRRFQAILPLRGKILNVERKDEA 329
KL D + ++ + + EG+SA G A GR + PLRGK+LNV
Sbjct: 529 KLTDANRAGTKDGYKCTLILTEGESAKGLAMAGRAVVGADLFGVYPLRGKMLNVRDASFD 588
Query: 330 AMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFY-RYQ 388
+ KNEEIQ++ +GL K E + LRY ++I+TD D DG+HI+ LL+ F ++
Sbjct: 589 QISKNEEIQSIKNFMGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLINFLEAQFP 648
Query: 389 KTLFDEGCIYVGVPPLYKVERG------KQVQYCYDDAELKKVKSSFPSNALYSIQRFKG 442
L + + P+ KV +G KQ + + E K + + +KG
Sbjct: 649 SLLKIPEFLIEFITPIVKVWKGDIKDPTKQHSF-FTIQEYNAWKEKHGHERGWEHKYYKG 707
Query: 443 LGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNL 502
LG + E + + R LK+ + E ++ + +V+ RKE ++ +
Sbjct: 708 LGTSSTEEAQEYFRDLD-RHLKEFHVMQDKEHELIELAFSKKKVEERKEWLRQYNPDTFM 766
Query: 503 DH 504
DH
Sbjct: 767 DH 768
Score = 95 (38.5 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 129 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREG 188
SD S + + NSI T GGTH+ + + L+ KK+K K L +R
Sbjct: 394 SDG-SFKQVSFVNSIATTSGGTHVNYIADQIAGKLSESLKKNK--KGTGSILKPAQIRNY 450
Query: 189 LTCIISVRVPNPEFEGQTKTRLGNPEV----RKVVDQS 222
++ ++ NP F QTK +L + + ++D+S
Sbjct: 451 CFLFVNAKIVNPAFSSQTKEQLTTKQTQFGSKPILDES 488
>WB|WBGene00022854 [details] [associations]
symbol:cin-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00433 SMART:SM00434 GO:GO:0005524 GO:GO:0009792
GO:GO:0016246 GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 EMBL:FO081697
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 GeneTree:ENSGT00390000016222
EMBL:EU191083 RefSeq:NP_495440.4 UniGene:Cel.20522
ProteinModelPortal:G5ECQ8 SMR:G5ECQ8 EnsemblMetazoa:ZK1127.7
GeneID:191525 KEGG:cel:CELE_ZK1127.7 CTD:191525 WormBase:ZK1127.7
OMA:SISIRTM NextBio:949466 Uniprot:G5ECQ8
Length = 842
Score = 193 (73.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 69/245 (28%), Positives = 117/245 (47%)
Query: 269 RSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILPLRG 318
++S L G KL D + + S+ + + EGDSA G + GRD+ + P R
Sbjct: 33 KTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDK--YGVFPFRR 90
Query: 319 KILNVERKDEAAMYKNEEIQNLIRALGLGV--KGE---DFKKEALRYHKIIILTDADVDG 373
K+LNV + + + E+ +I+ LGL K E DFK LRY K++I+ + D DG
Sbjct: 91 KLLNVCDLNVNQIADSAEVNAIIKILGLQYTKKYETEDDFK--TLRYGKLLIMANHDSDG 148
Query: 374 AHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNA 433
+ + LLL FF+R+ LF + + P+ K GK+ Y E + + + +
Sbjct: 149 SQFKGLLLNFFHRFWPALFKRDFVEDFITPIAKATEGKEEVSFYSLPEYSEWRMNTDNWK 208
Query: 434 LYSIQRFKGLGEMMPVQLWETTLNPEQRML--KQLVIEDAAEANVVFSSL-MGARVDTRK 490
Y+I+ + GLG + + + + + + K +D N+ FS + AR D
Sbjct: 209 SYTIKYYNGLGTLTSKEAKKCFSDMVRHRIRFKYNGADDDKAVNMAFSKKKIEARTDYLM 268
Query: 491 ELIQN 495
+L+Q+
Sbjct: 269 KLMQD 273
>UNIPROTKB|G5ECQ8 [details] [associations]
symbol:cin-4 "Chromosome instability 4" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00433
SMART:SM00434 GO:GO:0005524 GO:GO:0009792 GO:GO:0016246
GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 EMBL:FO081697 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 GeneTree:ENSGT00390000016222
EMBL:EU191083 RefSeq:NP_495440.4 UniGene:Cel.20522
ProteinModelPortal:G5ECQ8 SMR:G5ECQ8 EnsemblMetazoa:ZK1127.7
GeneID:191525 KEGG:cel:CELE_ZK1127.7 CTD:191525 WormBase:ZK1127.7
OMA:SISIRTM NextBio:949466 Uniprot:G5ECQ8
Length = 842
Score = 193 (73.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 69/245 (28%), Positives = 117/245 (47%)
Query: 269 RSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILPLRG 318
++S L G KL D + + S+ + + EGDSA G + GRD+ + P R
Sbjct: 33 KTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDK--YGVFPFRR 90
Query: 319 KILNVERKDEAAMYKNEEIQNLIRALGLGV--KGE---DFKKEALRYHKIIILTDADVDG 373
K+LNV + + + E+ +I+ LGL K E DFK LRY K++I+ + D DG
Sbjct: 91 KLLNVCDLNVNQIADSAEVNAIIKILGLQYTKKYETEDDFK--TLRYGKLLIMANHDSDG 148
Query: 374 AHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNA 433
+ + LLL FF+R+ LF + + P+ K GK+ Y E + + + +
Sbjct: 149 SQFKGLLLNFFHRFWPALFKRDFVEDFITPIAKATEGKEEVSFYSLPEYSEWRMNTDNWK 208
Query: 434 LYSIQRFKGLGEMMPVQLWETTLNPEQRML--KQLVIEDAAEANVVFSSL-MGARVDTRK 490
Y+I+ + GLG + + + + + + K +D N+ FS + AR D
Sbjct: 209 SYTIKYYNGLGTLTSKEAKKCFSDMVRHRIRFKYNGADDDKAVNMAFSKKKIEARTDYLM 268
Query: 491 ELIQN 495
+L+Q+
Sbjct: 269 KLMQD 273
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 507 483 0.00080 119 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 97
No. of states in DFA: 611 (65 KB)
Total size of DFA: 276 KB (2146 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 38.05u 0.10s 38.15t Elapsed: 00:00:02
Total cpu time: 38.09u 0.10s 38.19t Elapsed: 00:00:02
Start: Fri May 10 15:20:38 2013 End: Fri May 10 15:20:40 2013