BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010553
(507 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255562314|ref|XP_002522164.1| DNA gyrase subunit B, putative [Ricinus communis]
gi|223538602|gb|EEF40205.1| DNA gyrase subunit B, putative [Ricinus communis]
Length = 732
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/507 (86%), Positives = 484/507 (95%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
MEY Q+YSRG PVT L CH L V+S+DRQGT +RFWPDK+VFTTAI+FD+NTIAGR+REL
Sbjct: 226 MEYRQRYSRGNPVTILMCHSLAVESRDRQGTCVRFWPDKEVFTTAIEFDYNTIAGRVREL 285
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
AFLNPKLTI L+KED+DPEKNQY+EYF+AGGL EYV+WLNTDKKPLHDVVGF K++DGIT
Sbjct: 286 AFLNPKLTITLKKEDNDPEKNQYDEYFYAGGLIEYVKWLNTDKKPLHDVVGFGKEIDGIT 345
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
ID+ALQWCSDAYSDT+LGYANSIRTIDGGTHI+G KASLTRTLNSLGKKSK +K+KDI+L
Sbjct: 346 IDMALQWCSDAYSDTILGYANSIRTIDGGTHIDGFKASLTRTLNSLGKKSKIIKEKDINL 405
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGEHVREGLTCI+SV+VP+PEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS
Sbjct: 406 SGEHVREGLTCIVSVKVPSPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 465
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
ILSKSL+ALKAALAAK+AR+LVRQKSVLR+SSLPGKLADCSST PEESEIFIVEGDSAGG
Sbjct: 466 ILSKSLNALKAALAAKKARELVRQKSVLRTSSLPGKLADCSSTNPEESEIFIVEGDSAGG 525
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKEALRY
Sbjct: 526 SAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRY 585
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIIILTDADVDGAHIRTLLLTFF+RYQK LF+EGCIYVGVPPLYKVERGKQV YCYD+A
Sbjct: 586 HKIIILTDADVDGAHIRTLLLTFFFRYQKALFEEGCIYVGVPPLYKVERGKQVYYCYDEA 645
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
ELKK++SSFP NA Y+IQRFKGLGEMMP+QLWETT++PEQR+LKQLV+EDAAEANVVFSS
Sbjct: 646 ELKKLRSSFPQNASYNIQRFKGLGEMMPLQLWETTMDPEQRLLKQLVVEDAAEANVVFSS 705
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMGARVD RKELIQ++A VN+D LDI
Sbjct: 706 LMGARVDVRKELIQSSARAVNIDLLDI 732
>gi|75288399|sp|Q5YLB4.1|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial;
Flags: Precursor
gi|38017095|gb|AAR07943.1| DNA gyrase B subunit [Nicotiana benthamiana]
Length = 731
Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/506 (87%), Positives = 482/506 (95%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY QKYSRGKP+TTL CH LPV+ +DRQGT IRFWPDK+VFTT +QFD+NTIAGRIRELA
Sbjct: 226 EYQQKYSRGKPITTLICHDLPVEMRDRQGTAIRFWPDKEVFTTEMQFDYNTIAGRIRELA 285
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLNP+LTIAL+KED DPEK Q NEYF+AGGL EYV+WLN DKKPLHDV+GFRK+ DGITI
Sbjct: 286 FLNPELTIALKKEDIDPEKIQCNEYFYAGGLVEYVKWLNADKKPLHDVLGFRKEADGITI 345
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D+ALQWCSDAYSDTMLGYANSIRTIDGGTHI+GVKA+LTR LN+LGKKSKT+K+KDISLS
Sbjct: 346 DMALQWCSDAYSDTMLGYANSIRTIDGGTHIDGVKAALTRILNNLGKKSKTIKEKDISLS 405
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GEHVREGLTC+ISV+VPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI
Sbjct: 406 GEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 465
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
LSKSL+ALKAALAAKRAR+LVRQKSVL+SSSLPGKLADCS+T PEE+EIFIVEGDSAGGS
Sbjct: 466 LSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSATNPEEAEIFIVEGDSAGGS 525
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKEALRYH
Sbjct: 526 AKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYH 585
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIIILTDADVDGAHIRTLLLTFF+RYQ+ LF+EGCIYVGVPPLYKVERGKQV YCYDDAE
Sbjct: 586 KIIILTDADVDGAHIRTLLLTFFFRYQRALFEEGCIYVGVPPLYKVERGKQVYYCYDDAE 645
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LKKV+ SFPSNA Y+IQRFKGLGEMMP QLWETT+NPE R+LKQLV+EDAAEANVVFSSL
Sbjct: 646 LKKVQRSFPSNASYNIQRFKGLGEMMPAQLWETTMNPETRLLKQLVVEDAAEANVVFSSL 705
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG+RVD RK+LIQN+A+++NL+ LDI
Sbjct: 706 MGSRVDIRKQLIQNSASMMNLEQLDI 731
>gi|224086827|ref|XP_002307976.1| predicted protein [Populus trichocarpa]
gi|222853952|gb|EEE91499.1| predicted protein [Populus trichocarpa]
Length = 653
Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/506 (85%), Positives = 478/506 (94%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY QKYSRG PVTTL C+ L +SKD++GTRIRFWPDK+VFTT IQFD+NT+ GR+RELA
Sbjct: 148 EYQQKYSRGNPVTTLMCYELSAESKDQKGTRIRFWPDKEVFTTEIQFDYNTVGGRVRELA 207
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLNPKL I+L+KED+DPEKNQY+E+F+AGGL EYV WLNTDKK LHDVV FRK+VDGI I
Sbjct: 208 FLNPKLAISLKKEDNDPEKNQYDEHFYAGGLIEYVNWLNTDKKSLHDVVSFRKEVDGIAI 267
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D+ALQWCSDAYSDT+LGYANSIRT+DGGTHI+GVKASLTRTLN+ GKKSK +KDKDISLS
Sbjct: 268 DMALQWCSDAYSDTILGYANSIRTVDGGTHIDGVKASLTRTLNNFGKKSKVIKDKDISLS 327
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GEHVREGLTCIISV+VP+PEFEGQTKTRLGNPEVRKVV+QSVQEYLTEYLELHPDVLDSI
Sbjct: 328 GEHVREGLTCIISVKVPSPEFEGQTKTRLGNPEVRKVVEQSVQEYLTEYLELHPDVLDSI 387
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
LSKSL+ALKAALAAKRAR+LVRQKSVL+SSSLPGKLADCSST PEESEIFIVEGDSAGGS
Sbjct: 388 LSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSSTDPEESEIFIVEGDSAGGS 447
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILN+ER+DE AMYKNEEIQNLI ALGLGVKGEDFKK+ALRYH
Sbjct: 448 AKQGRDRRFQAILPLRGKILNIERRDEEAMYKNEEIQNLILALGLGVKGEDFKKDALRYH 507
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+IIILTDADVDGAHIRTLLLTFF+RYQ+ LFDEGCIYVGVPPLYKVERGKQV YC+DDAE
Sbjct: 508 RIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLYKVERGKQVYYCFDDAE 567
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+KV+SSFP NA Y++QRFKGLGEMMP QLWETT++PEQR+LKQLV+EDAAEA+VVFSSL
Sbjct: 568 LRKVQSSFPQNASYNMQRFKGLGEMMPAQLWETTMDPEQRLLKQLVVEDAAEASVVFSSL 627
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RVD RKELIQ AA ++N+DHLDI
Sbjct: 628 MGTRVDGRKELIQKAARMINVDHLDI 653
>gi|297739950|emb|CBI30132.3| unnamed protein product [Vitis vinifera]
Length = 707
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/507 (86%), Positives = 476/507 (93%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
MEY QKYSRGKPVT+LT VLP +S D QGT IRFWPDK+VFTT IQFD+NTIAGRIREL
Sbjct: 201 MEYQQKYSRGKPVTSLTHRVLPTESTDLQGTHIRFWPDKEVFTTEIQFDYNTIAGRIREL 260
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
AFLNP+L I LRKED DPEKNQYNEY +AGGL EYV+WLNTDKKP+HDVVGFRK DGI+
Sbjct: 261 AFLNPELAITLRKEDKDPEKNQYNEYCYAGGLVEYVRWLNTDKKPVHDVVGFRKVADGIS 320
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
ID+ALQWCSDAYSDTMLGYANSIRTIDGGTHI+G+KASLTRTLN+LGKKSK +K+KDI+L
Sbjct: 321 IDVALQWCSDAYSDTMLGYANSIRTIDGGTHIDGMKASLTRTLNNLGKKSKIIKEKDITL 380
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGEHVREGLTC+ISV+VPNPEFEGQTKTRLGNPEVRKVVDQ+VQE+LTEYLELHPDVLD
Sbjct: 381 SGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQTVQEFLTEYLELHPDVLDL 440
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
ILSKSL+ALKAALAAKRAR+LVRQKSVL+SSSLPGKLADCSST PEESEIFIVEGDSAGG
Sbjct: 441 ILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSSTNPEESEIFIVEGDSAGG 500
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDRRFQAILPLRGKILN+ERKDEAAMYK+EEIQNLI LGLGVKGEDFKKEALRY
Sbjct: 501 SAKQGRDRRFQAILPLRGKILNIERKDEAAMYKSEEIQNLILGLGLGVKGEDFKKEALRY 560
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIIILTDADVDGAHIRTLLLTFF+RYQ+ LFDEGCIYVGVPPL+KVERGKQV YCYDDA
Sbjct: 561 HKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLFKVERGKQVHYCYDDA 620
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
ELK+++ S P NA YSIQRFKGLGEMMPVQLWETT++PE+R+LKQLV+EDAAEANVVFSS
Sbjct: 621 ELKQLQHSLPPNASYSIQRFKGLGEMMPVQLWETTMDPERRLLKQLVVEDAAEANVVFSS 680
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMGARVD RKELIQ +A+ + LD LDI
Sbjct: 681 LMGARVDFRKELIQKSASTMKLDQLDI 707
>gi|225441215|ref|XP_002266668.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like
[Vitis vinifera]
Length = 719
Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/507 (86%), Positives = 476/507 (93%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
MEY QKYSRGKPVT+LT VLP +S D QGT IRFWPDK+VFTT IQFD+NTIAGRIREL
Sbjct: 213 MEYQQKYSRGKPVTSLTHRVLPTESTDLQGTHIRFWPDKEVFTTEIQFDYNTIAGRIREL 272
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
AFLNP+L I LRKED DPEKNQYNEY +AGGL EYV+WLNTDKKP+HDVVGFRK DGI+
Sbjct: 273 AFLNPELAITLRKEDKDPEKNQYNEYCYAGGLVEYVRWLNTDKKPVHDVVGFRKVADGIS 332
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
ID+ALQWCSDAYSDTMLGYANSIRTIDGGTHI+G+KASLTRTLN+LGKKSK +K+KDI+L
Sbjct: 333 IDVALQWCSDAYSDTMLGYANSIRTIDGGTHIDGMKASLTRTLNNLGKKSKIIKEKDITL 392
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGEHVREGLTC+ISV+VPNPEFEGQTKTRLGNPEVRKVVDQ+VQE+LTEYLELHPDVLD
Sbjct: 393 SGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQTVQEFLTEYLELHPDVLDL 452
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
ILSKSL+ALKAALAAKRAR+LVRQKSVL+SSSLPGKLADCSST PEESEIFIVEGDSAGG
Sbjct: 453 ILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSSTNPEESEIFIVEGDSAGG 512
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDRRFQAILPLRGKILN+ERKDEAAMYK+EEIQNLI LGLGVKGEDFKKEALRY
Sbjct: 513 SAKQGRDRRFQAILPLRGKILNIERKDEAAMYKSEEIQNLILGLGLGVKGEDFKKEALRY 572
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIIILTDADVDGAHIRTLLLTFF+RYQ+ LFDEGCIYVGVPPL+KVERGKQV YCYDDA
Sbjct: 573 HKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLFKVERGKQVHYCYDDA 632
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
ELK+++ S P NA YSIQRFKGLGEMMPVQLWETT++PE+R+LKQLV+EDAAEANVVFSS
Sbjct: 633 ELKQLQHSLPPNASYSIQRFKGLGEMMPVQLWETTMDPERRLLKQLVVEDAAEANVVFSS 692
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMGARVD RKELIQ +A+ + LD LDI
Sbjct: 693 LMGARVDFRKELIQKSASTMKLDQLDI 719
>gi|224139720|ref|XP_002323244.1| predicted protein [Populus trichocarpa]
gi|222867874|gb|EEF05005.1| predicted protein [Populus trichocarpa]
Length = 700
Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/506 (84%), Positives = 475/506 (93%), Gaps = 8/506 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y QKYSRG PVTTLTCH LPV+SK+R+GT I+FWPDK+VFTT IQFD++TIAGR+RELA
Sbjct: 203 QYQQKYSRGNPVTTLTCHELPVESKERRGTHIKFWPDKEVFTTEIQFDYHTIAGRVRELA 262
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLNPK D+DPEKNQ++E+F+AGGL EYV WLNTDKKPLHDV+GFRK+VDGI I
Sbjct: 263 FLNPK--------DNDPEKNQFDEHFYAGGLVEYVNWLNTDKKPLHDVLGFRKEVDGIAI 314
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D+ALQWCSDAYSDT+LGYANSIRT+DGGTHI+G KASLTRTLN+LGKKSK +KDKD+SLS
Sbjct: 315 DMALQWCSDAYSDTILGYANSIRTVDGGTHIDGAKASLTRTLNNLGKKSKVIKDKDMSLS 374
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GEHVREGLTCIISV+VP+PEFEGQTKTRLGNPEVRKVV+QS+QEYLTEYLELHPD LDSI
Sbjct: 375 GEHVREGLTCIISVKVPSPEFEGQTKTRLGNPEVRKVVEQSIQEYLTEYLELHPDALDSI 434
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
LSKSL+ALKAALAAKRAR+LVRQKSVL+SSSLPGKLADCSST PEESEIFIVEGDSAGGS
Sbjct: 435 LSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSSTDPEESEIFIVEGDSAGGS 494
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILN+ER+DEAAMYKNEEIQNLI LGLGVKGEDFKK+ALRYH
Sbjct: 495 AKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYH 554
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIIILTDADVDGAHIRTLLLTFF+RYQ+ LFDEGCIYVGVPPLYKVERGKQ YC+DDAE
Sbjct: 555 KIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLYKVERGKQAYYCFDDAE 614
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LKK++ SFP NA Y+IQRFKGLGEMMP QLWETT++PE+R+LKQLV+EDAAEAN+VFSSL
Sbjct: 615 LKKIQRSFPQNASYNIQRFKGLGEMMPAQLWETTMDPERRVLKQLVVEDAAEANIVFSSL 674
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RVD RKELIQNAA+++N+DHLDI
Sbjct: 675 MGTRVDFRKELIQNAASMINVDHLDI 700
>gi|449488224|ref|XP_004157973.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 719
Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/506 (84%), Positives = 469/506 (92%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E+HQKYSRGKP + LT HV + K+ QGT IRFWPDK+VFTT IQFD+NTI+GRIRELA
Sbjct: 214 EFHQKYSRGKPTSILTSHVPSSELKNHQGTHIRFWPDKEVFTTGIQFDYNTISGRIRELA 273
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLNPKLTIAL KED+D EKNQYNEY +AGGL EYV WLN+DK P+H+V GFRK+ DG+ I
Sbjct: 274 FLNPKLTIALTKEDNDLEKNQYNEYCYAGGLVEYVAWLNSDKNPIHEVFGFRKETDGVAI 333
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D+ALQWC+DAYSDT+LGYANSIRTIDGGTHI+G+KASLTRTLN+LGKKSK KDKDISLS
Sbjct: 334 DVALQWCADAYSDTILGYANSIRTIDGGTHIDGMKASLTRTLNNLGKKSKIFKDKDISLS 393
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GEHVREGLTC++SVRV NPEFEGQTKTRLGNPEVRKVV+QS+QEYLTEYLELHPDVL+ I
Sbjct: 394 GEHVREGLTCVVSVRVRNPEFEGQTKTRLGNPEVRKVVEQSIQEYLTEYLELHPDVLELI 453
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
LSKSL+ALKAALAAKRAR+LVRQKSVLRSSSLPGKLADCSS PEESEIFIVEGDSAGGS
Sbjct: 454 LSKSLNALKAALAAKRARELVRQKSVLRSSSLPGKLADCSSIKPEESEIFIVEGDSAGGS 513
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEI NLIRALGLG KGEDFKK+ALRYH
Sbjct: 514 AKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEINNLIRALGLGFKGEDFKKDALRYH 573
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIIILTDADVDGAHIRTLLLTFF+RYQK LFDEGCIYVGVPPLYKVERGKQV YCYDD E
Sbjct: 574 KIIILTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQVYYCYDDKE 633
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LKKV+SSFPSNA Y+IQRFKGLGEMMP QLWETT++PE+RMLKQL +EDAAEANVVFSSL
Sbjct: 634 LKKVQSSFPSNASYNIQRFKGLGEMMPAQLWETTMDPERRMLKQLAVEDAAEANVVFSSL 693
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RVD RKELIQ +A+ +NL+HLDI
Sbjct: 694 MGVRVDFRKELIQKSASTMNLEHLDI 719
>gi|356504692|ref|XP_003521129.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like
[Glycine max]
Length = 726
Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/507 (83%), Positives = 474/507 (93%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
MEY Q YSRGKPV+ L C VLP + KD +GTR+RFWPDK+VFTTAIQFDHNTIAGRIREL
Sbjct: 220 MEYMQTYSRGKPVSILKCLVLPDERKDLRGTRVRFWPDKEVFTTAIQFDHNTIAGRIREL 279
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
AFLNPKLTI LRKED+DPEK QYNEYF+AGGL EYV+WLNTDKK LHDV+ FRK+ DGIT
Sbjct: 280 AFLNPKLTITLRKEDNDPEKVQYNEYFYAGGLVEYVKWLNTDKKALHDVLSFRKETDGIT 339
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+D+A QWC DAYSDT+LGYANSIRTIDGGTHI+ +KAS+TRTLNSLGKKSK +K+KDI+L
Sbjct: 340 VDIAFQWCEDAYSDTILGYANSIRTIDGGTHIDAMKASITRTLNSLGKKSKVIKEKDITL 399
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGEHVREGLTC++SV+VPNPEFEGQTKTRLGNPEVRKVVDQS+QEYLTEYLELHPDVLDS
Sbjct: 400 SGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDS 459
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
+LSK+L+A KAALAAKRAR+LVRQKSVLRSSSLPGKLADCSST PEE EIFIVEGDSAGG
Sbjct: 460 VLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSTDPEECEIFIVEGDSAGG 519
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDRRFQAILPLRGKILN+ER+DEAAMYKNEEIQNLI LGLGVKGEDFKK+ALRY
Sbjct: 520 SAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRY 579
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIIILTDADVDGAHIRTLLLTFF+RYQ+ LFDEGCIYVGVPPLYKV RGKQV YCYDDA
Sbjct: 580 HKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLYKVVRGKQVHYCYDDA 639
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+LKK++ SFP+NA Y++QRFKGLGEMMP+QLWETT++PE+R+LKQL +EDAAEAN+VFSS
Sbjct: 640 DLKKLQRSFPANASYNMQRFKGLGEMMPLQLWETTMDPERRLLKQLKVEDAAEANIVFSS 699
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMG RVD RKELI+N+A+L++L LDI
Sbjct: 700 LMGTRVDVRKELIRNSASLIDLHQLDI 726
>gi|449453173|ref|XP_004144333.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 719
Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/506 (84%), Positives = 468/506 (92%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E+HQKYSRGKP + LT HV + K+ QGT IRFWPDK+VFTT IQFD+NTI+GRIRELA
Sbjct: 214 EFHQKYSRGKPASILTSHVPSSELKNHQGTHIRFWPDKEVFTTGIQFDYNTISGRIRELA 273
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLNPKLTI L KED+D EKNQYNEY +AGGL EYV WLN+DK P+H+V GFRK+ DG+ I
Sbjct: 274 FLNPKLTITLTKEDNDLEKNQYNEYCYAGGLVEYVAWLNSDKNPIHEVFGFRKETDGVAI 333
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D+ALQWC+DAYSDT+LGYANSIRTIDGGTHI+G+KASLTRTLN+LGKKSK KDKDISLS
Sbjct: 334 DVALQWCADAYSDTILGYANSIRTIDGGTHIDGMKASLTRTLNNLGKKSKIFKDKDISLS 393
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GEHVREGLTC++SVRV NPEFEGQTKTRLGNPEVRKVV+QS+QEYLTEYLELHPDVL+ I
Sbjct: 394 GEHVREGLTCVVSVRVRNPEFEGQTKTRLGNPEVRKVVEQSIQEYLTEYLELHPDVLELI 453
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
LSKSL+ALKAALAAKRAR+LVRQKSVLRSSSLPGKLADCSS PEESEIFIVEGDSAGGS
Sbjct: 454 LSKSLNALKAALAAKRARELVRQKSVLRSSSLPGKLADCSSIKPEESEIFIVEGDSAGGS 513
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEI NLIRALGLG KGEDFKK+ALRYH
Sbjct: 514 AKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEINNLIRALGLGFKGEDFKKDALRYH 573
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIIILTDADVDGAHIRTLLLTFF+RYQK LFDEGCIYVGVPPLYKVERGKQV YCYDD E
Sbjct: 574 KIIILTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQVYYCYDDKE 633
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LKKV+SSFPSNA Y+IQRFKGLGEMMP QLWETT++PE+RMLKQL +EDAAEANVVFSSL
Sbjct: 634 LKKVQSSFPSNASYNIQRFKGLGEMMPAQLWETTMDPERRMLKQLAVEDAAEANVVFSSL 693
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RVD RKELIQ +A+ +NL+HLDI
Sbjct: 694 MGVRVDFRKELIQKSASTMNLEHLDI 719
>gi|356571931|ref|XP_003554124.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like
[Glycine max]
Length = 724
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/507 (83%), Positives = 472/507 (93%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
MEY Q YSRGKPV+ L C VLP + KD +GTR+RFWPDK+VFTTAIQFDHNTIAGRIREL
Sbjct: 218 MEYMQTYSRGKPVSILKCLVLPDERKDLRGTRVRFWPDKEVFTTAIQFDHNTIAGRIREL 277
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
AFLNPKLTI RKED+DPEK QYNEYF+AGGL EYV+WLNTDKK LHDV+ FRK+ DGIT
Sbjct: 278 AFLNPKLTITFRKEDNDPEKVQYNEYFYAGGLVEYVKWLNTDKKALHDVLSFRKETDGIT 337
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+D+A QW DAYSDT+LGYANSIRTIDGGTHI+ +KAS+TRTLNSLGKKSK +K+KDI+L
Sbjct: 338 VDIAFQWSEDAYSDTILGYANSIRTIDGGTHIDAMKASITRTLNSLGKKSKVIKEKDITL 397
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGEHVREGLTC++SV+VPNPEFEGQTKTRLGNPEVRKVVDQS+QEYLTEYLELHPDVLDS
Sbjct: 398 SGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDS 457
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
+LSK+L+A KAALAAKRAR+LVRQKSVLRSSSLPGKLADCSST PEE EIFIVEGDSAGG
Sbjct: 458 VLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSTDPEECEIFIVEGDSAGG 517
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDRRFQAILPLRGKILN+ER+DEAAMYKNEEIQNLI LGLGVKGEDFKK+ALRY
Sbjct: 518 SAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRY 577
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIIILTDADVDGAHIRTLLLTFF+RYQ+ LFDEGCIYVGVPPLYKV RGKQV YCYDDA
Sbjct: 578 HKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLYKVVRGKQVHYCYDDA 637
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+LKK++ SFP NA Y++QRFKGLGEMMP+QLWETT++PE+R+LKQL +EDAAEAN+VFSS
Sbjct: 638 DLKKLQRSFPPNASYNMQRFKGLGEMMPLQLWETTMDPERRLLKQLKVEDAAEANIVFSS 697
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMG RVD RKELI+N+A++++LD LDI
Sbjct: 698 LMGTRVDFRKELIRNSASMIDLDQLDI 724
>gi|378405244|sp|Q9SS38.3|GYRBP_ARATH RecName: Full=DNA gyrase subunit B, chloroplastic; Flags: Precursor
Length = 730
Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/507 (84%), Positives = 472/507 (93%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
ME+ QKYSRGKPVTTLTCHVLP +S+ QGT IRFWPDK+VFTTAIQFDHNTIAGRIREL
Sbjct: 224 MEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEVFTTAIQFDHNTIAGRIREL 283
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
AFLNPK+TI+L+KED DPE++ Y+EYF+AGGL EYV WLNTDKKPLHDV+GFRK+++G T
Sbjct: 284 AFLNPKVTISLKKEDDDPERDVYSEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEINGST 343
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+D++LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSL KK K +K+KDISL
Sbjct: 344 VDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISL 403
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGEHVREGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTEYLELHPDVL+S
Sbjct: 404 SGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLES 463
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+SKSL+A KAALAAKRAR+LVR KSVL+SSSLPGKLADCSST P ESEIFIVEGDSAGG
Sbjct: 464 IISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGG 523
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDF KE LRY
Sbjct: 524 SAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRY 583
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIIILTDADVDGAHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KVERGKQ YCYDDA
Sbjct: 584 HKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDA 643
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
LKK+ +SFP NA Y+IQRFKGLGEMMP QLWETT+NP+ R+LKQLV++DAAE N+VFSS
Sbjct: 644 ALKKITASFPGNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVVDDAAETNMVFSS 703
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMGARVD RKELI++AA +NL++LDI
Sbjct: 704 LMGARVDVRKELIKSAATRMNLENLDI 730
>gi|18414465|ref|NP_568133.1| DNA gyrase subunit B [Arabidopsis thaliana]
gi|75165162|sp|Q94BZ7.1|GYRBM_ARATH RecName: Full=DNA gyrase subunit B, mitochondrial; Flags: Precursor
gi|14517374|gb|AAK62578.1| AT3g10270/F14P13_13 [Arabidopsis thaliana]
gi|22655426|gb|AAM98305.1| At3g10270/F14P13_13 [Arabidopsis thaliana]
gi|332003319|gb|AED90702.1| DNA gyrase subunit B [Arabidopsis thaliana]
Length = 732
Score = 870 bits (2247), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/507 (83%), Positives = 471/507 (92%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
ME+ Q YSRGKP+TTLTC VLP++SK +GT IRFWPDK+VFTTAI+FDHNTIAGRIREL
Sbjct: 226 MEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIREL 285
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
AFLNPK+TI+L+KED DPEK QY+EY FAGGL EYV WLNTDK P+HDV+GFR++++G T
Sbjct: 286 AFLNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLGFRREINGAT 345
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+D+ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN+L KKSKTVK+KDISL
Sbjct: 346 VDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISL 405
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGEHVREGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTE+LELHPD+L+S
Sbjct: 406 SGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILES 465
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+SKSL+A KAALAAKRAR+LVR KSVL+SSSLPGKLADCSST PE SEIFIVEGDSAGG
Sbjct: 466 IISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGG 525
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKE LRY
Sbjct: 526 SAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRY 585
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIIILTDADVDGAHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KVERGK QYCYDDA
Sbjct: 586 HKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDA 645
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+LKK+ S+FP+NA Y+IQRFKGLGEMMP QLWETT+NPE R+LKQLV++D AEAN+ FSS
Sbjct: 646 DLKKITSNFPANASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSS 705
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMGARVD RKELI+NAA +NL LDI
Sbjct: 706 LMGARVDVRKELIKNAATRINLQRLDI 732
>gi|297833810|ref|XP_002884787.1| hypothetical protein ARALYDRAFT_478355 [Arabidopsis lyrata subsp.
lyrata]
gi|297330627|gb|EFH61046.1| hypothetical protein ARALYDRAFT_478355 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/510 (83%), Positives = 473/510 (92%), Gaps = 3/510 (0%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ---VFTTAIQFDHNTIAGRI 57
ME+ QKYSRGKPVTTLTCHVLP +S+ QGT IRFWPDK+ +FTTAIQFDHNTIAGRI
Sbjct: 148 MEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEGFALFTTAIQFDHNTIAGRI 207
Query: 58 RELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVD 117
RELAFLNPK+TI+L+KED DPE++ Y+EYF+AGGL EYV WLNTDKKPLHDV+GFRK+++
Sbjct: 208 RELAFLNPKVTISLKKEDDDPERDLYSEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEIN 267
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G T+D++LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSL KK K +K+KD
Sbjct: 268 GSTVDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKD 327
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
ISLSGEHVREGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTEYLELHPDV
Sbjct: 328 ISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDV 387
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
L+SI+SKSL+A KAALAAKRAR+LVR KSVL+SSSLPGKLADCSST P ESEIFIVEGDS
Sbjct: 388 LESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDS 447
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDF KE
Sbjct: 448 AGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKEN 507
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHKIIILTDADVDGAHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KVERGKQ YCY
Sbjct: 508 LRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCY 567
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
DDA LKK+ +SFP+NA Y+IQRFKGLGEMMP QLWETT+NP+ R+LKQLV+EDAAE N+V
Sbjct: 568 DDAALKKITASFPANASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVVEDAAETNMV 627
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
FSSLMGARVD RKELI++AA +NL++LDI
Sbjct: 628 FSSLMGARVDVRKELIKSAATRMNLENLDI 657
>gi|297810505|ref|XP_002873136.1| hypothetical protein ARALYDRAFT_487191 [Arabidopsis lyrata subsp.
lyrata]
gi|297318973|gb|EFH49395.1| hypothetical protein ARALYDRAFT_487191 [Arabidopsis lyrata subsp.
lyrata]
Length = 729
Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/507 (83%), Positives = 471/507 (92%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
ME+ Q YSRGKP+TTLTC VL ++S+ +GT IRFWPDK+VFTTAI+FDHNTIAGRIREL
Sbjct: 223 MEHKQNYSRGKPITTLTCRVLTLESERTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIREL 282
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
AFLNPK+TI+L+KED DPEKNQY+EY+FAGGL EYV WLNTDK P+HDV+GFR++++G T
Sbjct: 283 AFLNPKVTISLKKEDDDPEKNQYSEYYFAGGLTEYVSWLNTDKNPIHDVLGFRREINGAT 342
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+D+ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN+L KKSKTVK+KDISL
Sbjct: 343 VDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNALAKKSKTVKEKDISL 402
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGEHVREGLTCI+SV++PNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTE+LELHPDVL+S
Sbjct: 403 SGEHVREGLTCIVSVKIPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDVLES 462
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+SKSL+A KAALAAKRAR+LVR KSVL+SSSLPGKLADCSST PE SEIFIVEGDSAGG
Sbjct: 463 IVSKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEASEIFIVEGDSAGG 522
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKE LRY
Sbjct: 523 SAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRY 582
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIIILTDADVDGAHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KVERGK YCYDDA
Sbjct: 583 HKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKHAHYCYDDA 642
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+LKK+ S+FP+NA Y+IQRFKGLGEMMP QLWETT+NPE R+LKQLV++D AEAN+ FSS
Sbjct: 643 DLKKITSNFPANASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSS 702
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMGARVD RKELI+NAA +NL LDI
Sbjct: 703 LMGARVDVRKELIKNAATRINLQRLDI 729
>gi|6056198|gb|AAF02815.1|AC009400_11 putative DNA gyrase subunit B [Arabidopsis thaliana]
Length = 657
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/510 (83%), Positives = 472/510 (92%), Gaps = 3/510 (0%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ---VFTTAIQFDHNTIAGRI 57
ME+ QKYSRGKPVTTLTCHVLP +S+ QGT IRFWPDK+ +FTTAIQFDHNTIAGRI
Sbjct: 148 MEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEGFALFTTAIQFDHNTIAGRI 207
Query: 58 RELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVD 117
RELAFLNPK+TI+L+KED DPE++ Y+EYF+AGGL EYV WLNTDKKPLHDV+GFRK+++
Sbjct: 208 RELAFLNPKVTISLKKEDDDPERDVYSEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEIN 267
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G T+D++LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSL KK K +K+KD
Sbjct: 268 GSTVDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKD 327
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
ISLSGEHVREGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTEYLELHPDV
Sbjct: 328 ISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDV 387
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
L+SI+SKSL+A KAALAAKRAR+LVR KSVL+SSSLPGKLADCSST P ESEIFIVEGDS
Sbjct: 388 LESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDS 447
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDF KE
Sbjct: 448 AGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKEN 507
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHKIIILTDADVDGAHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KVERGKQ YCY
Sbjct: 508 LRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCY 567
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
DDA LKK+ +SFP NA Y+IQRFKGLGEMMP QLWETT+NP+ R+LKQLV++DAAE N+V
Sbjct: 568 DDAALKKITASFPGNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVVDDAAETNMV 627
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
FSSLMGARVD RKELI++AA +NL++LDI
Sbjct: 628 FSSLMGARVDVRKELIKSAATRMNLENLDI 657
>gi|334185208|ref|NP_187638.5| DNA gyrase subunit B [Arabidopsis thaliana]
gi|332641361|gb|AEE74882.1| DNA gyrase subunit B [Arabidopsis thaliana]
Length = 772
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/539 (79%), Positives = 472/539 (87%), Gaps = 32/539 (5%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
ME+ QKYSRGKPVTTLTCHVLP +S+ QGT IRFWPDK+VFTTAIQFDHNTIAGRIREL
Sbjct: 234 MEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEVFTTAIQFDHNTIAGRIREL 293
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
AFLNPK+TI+L+KED DPE++ Y+EYF+AGGL EYV WLNTDKKPLHDV+GFRK+++G T
Sbjct: 294 AFLNPKVTISLKKEDDDPERDVYSEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEINGST 353
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK------ 174
+D++LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSL KK K +K
Sbjct: 354 VDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKVKGYII 413
Query: 175 --------------------------DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKT 208
+KDISLSGEHVREGLTCI+SV+VPNPEFEGQTKT
Sbjct: 414 YSSPWIETKFKYSSALKRHALRTINNEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKT 473
Query: 209 RLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVL 268
RLGNPEVRK+VDQSVQEYLTEYLELHPDVL+SI+SKSL+A KAALAAKRAR+LVR KSVL
Sbjct: 474 RLGNPEVRKIVDQSVQEYLTEYLELHPDVLESIISKSLNAYKAALAAKRARELVRSKSVL 533
Query: 269 RSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDE 328
+SSSLPGKLADCSST P ESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILN+ERKDE
Sbjct: 534 KSSSLPGKLADCSSTDPAESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDE 593
Query: 329 AAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQ 388
AAMYKNEEIQNLI LGLGVKGEDF KE LRYHKIIILTDADVDGAHIRTLLLTFF+RYQ
Sbjct: 594 AAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQ 653
Query: 389 KTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMP 448
+ LFD GCIYVGVPPL+KVERGKQ YCYDDA LKK+ +SFP NA Y+IQRFKGLGEMMP
Sbjct: 654 RALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKKITASFPGNASYNIQRFKGLGEMMP 713
Query: 449 VQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
QLWETT+NP+ R+LKQLV++DAAE N+VFSSLMGARVD RKELI++AA +NL++LDI
Sbjct: 714 AQLWETTMNPDTRILKQLVVDDAAETNMVFSSLMGARVDVRKELIKSAATRMNLENLDI 772
>gi|9955568|emb|CAC05495.1| DNA gyrase subunit B-like protein [Arabidopsis thaliana]
Length = 760
Score = 852 bits (2202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/537 (78%), Positives = 471/537 (87%), Gaps = 30/537 (5%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ-------------------- 40
ME+ Q YSRGKP+TTLTC VLP++SK +GT IRFWPDK+
Sbjct: 224 MEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEGFACFPLLTTLPKPKLDLMI 283
Query: 41 ----------VFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG 90
VFTTAI+FDHNTIAGRIRELAFLNPK+TI+L+KED DPEK QY+EY FAG
Sbjct: 284 NFPLWNELFSVFTTAIEFDHNTIAGRIRELAFLNPKVTISLKKEDDDPEKTQYSEYSFAG 343
Query: 91 GLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGT 150
GL EYV WLNTDK P+HDV+GFR++++G T+D+ALQWCSDAYSDTMLGYANSIRTIDGGT
Sbjct: 344 GLTEYVSWLNTDKNPIHDVLGFRREINGATVDVALQWCSDAYSDTMLGYANSIRTIDGGT 403
Query: 151 HIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRL 210
HIEGVKASLTRTLN+L KKSKTVK+KDISLSGEHVREGLTCI+SV+VPNPEFEGQTKTRL
Sbjct: 404 HIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRL 463
Query: 211 GNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRS 270
GNPEVRK+VDQSVQEYLTE+LELHPD+L+SI+SKSL+A KAALAAKRAR+LVR KSVL+S
Sbjct: 464 GNPEVRKIVDQSVQEYLTEFLELHPDILESIISKSLNAYKAALAAKRARELVRSKSVLKS 523
Query: 271 SSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAA 330
SSLPGKLADCSST PE SEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILN+ERKDEAA
Sbjct: 524 SSLPGKLADCSSTDPEVSEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAA 583
Query: 331 MYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKT 390
MYKNEEIQNLI LGLGVKGEDFKKE LRYHKIIILTDADVDGAHIRTLLLTFF+RYQ+
Sbjct: 584 MYKNEEIQNLILGLGLGVKGEDFKKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRA 643
Query: 391 LFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQ 450
LFD GCIYVGVPPL+KVERGK QYCYDDA+LKK+ S+FP+NA Y+IQRFKGLGEMMP Q
Sbjct: 644 LFDAGCIYVGVPPLFKVERGKNAQYCYDDADLKKITSNFPANASYNIQRFKGLGEMMPEQ 703
Query: 451 LWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
LWETT+NPE R+LKQLV++D AEAN+ FSSLMGARVD RKELI+NAA +NL LDI
Sbjct: 704 LWETTMNPETRILKQLVVDDIAEANMTFSSLMGARVDVRKELIKNAATRINLQRLDI 760
>gi|242052563|ref|XP_002455427.1| hypothetical protein SORBIDRAFT_03g010630 [Sorghum bicolor]
gi|241927402|gb|EES00547.1| hypothetical protein SORBIDRAFT_03g010630 [Sorghum bicolor]
Length = 729
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/506 (78%), Positives = 458/506 (90%), Gaps = 2/506 (0%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y Q YSRGKP T L+ L ++ RQGT IRFWPDK +FTT I FD NTI+ RIRELA
Sbjct: 226 KYRQSYSRGKPTTPLSSITLTGETSPRQGTSIRFWPDKDIFTTTIDFDFNTISSRIRELA 285
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLNP+LTI L KE+ Q+NEY +AGGL EYV+WLNTDKKPLHD + FRK++DGIT+
Sbjct: 286 FLNPELTITLTKEEG--HTVQHNEYCYAGGLVEYVKWLNTDKKPLHDPIAFRKELDGITV 343
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D++LQW SD+YSDT+LGYANSIRTIDGGTHI+G+KASLTRT+N+ KKSKT+KDKDI+LS
Sbjct: 344 DVSLQWSSDSYSDTVLGYANSIRTIDGGTHIDGLKASLTRTINNFAKKSKTIKDKDITLS 403
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GEHVREG+TC+ISV+VP+PEFEGQTKTRLGNPEVR++V+Q+VQE LTEYLELHPDVLDSI
Sbjct: 404 GEHVREGMTCVISVKVPSPEFEGQTKTRLGNPEVRRIVEQAVQENLTEYLELHPDVLDSI 463
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
LSKSL+ALKA+LAAKRAR+LVR KSVL+SSS+PGKLADC+ST PEESEIFIVEGDSAGGS
Sbjct: 464 LSKSLNALKASLAAKRARELVRSKSVLKSSSIPGKLADCASTNPEESEIFIVEGDSAGGS 523
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILN+ER+DEAAMYKNEEIQNLI ALGLGVKGEDFKKEALRYH
Sbjct: 524 AKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILALGLGVKGEDFKKEALRYH 583
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+ILTDADVDGAHIRTLLLTFF+RYQ+ LFDEGCIYVGVPPLYKVERGKQ YCYDDA+
Sbjct: 584 KIVILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLYKVERGKQAHYCYDDAD 643
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LK++ ++FP NA Y IQRFKGLGEMMPVQLWETT++PE+R+LKQL +EDAAEANVVFSSL
Sbjct: 644 LKEIVNTFPPNASYHIQRFKGLGEMMPVQLWETTMDPERRLLKQLKVEDAAEANVVFSSL 703
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG+RV+ RK+LIQ AA+ +++D LDI
Sbjct: 704 MGSRVEYRKQLIQEAASTISMDQLDI 729
>gi|115435866|ref|NP_001042691.1| Os01g0268300 [Oryza sativa Japonica Group]
gi|75285839|sp|Q5NBJ3.1|GYRB_ORYSJ RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial;
Flags: Precursor
gi|56783730|dbj|BAD81142.1| putative DNA gyrase B subunit [Oryza sativa Japonica Group]
gi|56783751|dbj|BAD81163.1| putative DNA gyrase B subunit [Oryza sativa Japonica Group]
gi|113532222|dbj|BAF04605.1| Os01g0268300 [Oryza sativa Japonica Group]
Length = 729
Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/506 (80%), Positives = 463/506 (91%), Gaps = 1/506 (0%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY Q YSRGK +T LT L +S RQGTRIRFWPDK +FTT + FD NTIAGRIRELA
Sbjct: 225 EYRQNYSRGKAITMLTSRTLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELA 284
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLNP+LTIAL KE+ D + Q+NEY +AGGL EYV+WLNTDKK LHD + FRK++DGIT+
Sbjct: 285 FLNPELTIALTKEEDDLQV-QHNEYCYAGGLVEYVKWLNTDKKSLHDPIAFRKEMDGITV 343
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D++LQWCSD+YSDT+LGYANSIRTIDGGTHI+G+K SLTRT+N+ KKSKT+KDKDISLS
Sbjct: 344 DVSLQWCSDSYSDTVLGYANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLS 403
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GEHVREG+TCII+V+VPNPEFEGQTKTRLGNPEVR++V+QSVQE LTEYLELHPDVLDSI
Sbjct: 404 GEHVREGMTCIIAVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSI 463
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
LSKSL+ALKAALAAKRAR+LVR KSVL+SSSLPGKLADC+S+ PEESEIFIVEGDSAGGS
Sbjct: 464 LSKSLNALKAALAAKRARELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGS 523
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQAILPLRGKILN+ER+DEAA+YKNEEIQNLI ALGLGVKGEDF KEALRYH
Sbjct: 524 AKQGRDRKFQAILPLRGKILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYH 583
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+ILTDADVDGAHIRTLLLTFF+RYQK LFDEGCIYVGVPPLYKVERGKQ YCYDDA+
Sbjct: 584 KIVILTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDAD 643
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LK++ ++FP+NA Y IQRFKGLGEMMP QLWETT++PE+RMLKQL +EDAAEANVVFSSL
Sbjct: 644 LKELVNTFPTNASYHIQRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSL 703
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RVD RK+LIQNAA++VNL+HLDI
Sbjct: 704 MGTRVDVRKQLIQNAASMVNLEHLDI 729
>gi|125569849|gb|EAZ11364.1| hypothetical protein OsJ_01229 [Oryza sativa Japonica Group]
Length = 753
Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/506 (80%), Positives = 463/506 (91%), Gaps = 1/506 (0%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY Q YSRGK +T LT L +S RQGTRIRFWPDK +FTT + FD NTIAGRIRELA
Sbjct: 249 EYRQNYSRGKAITMLTSRTLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELA 308
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLNP+LTIAL KE+ D + Q+NEY +AGGL EYV+WLNTDKK LHD + FRK++DGIT+
Sbjct: 309 FLNPELTIALTKEEDDLQV-QHNEYCYAGGLVEYVKWLNTDKKSLHDPIAFRKEMDGITV 367
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D++LQWCSD+YSDT+LGYANSIRTIDGGTHI+G+K SLTRT+N+ KKSKT+KDKDISLS
Sbjct: 368 DVSLQWCSDSYSDTVLGYANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLS 427
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GEHVREG+TCII+V+VPNPEFEGQTKTRLGNPEVR++V+QSVQE LTEYLELHPDVLDSI
Sbjct: 428 GEHVREGMTCIIAVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSI 487
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
LSKSL+ALKAALAAKRAR+LVR KSVL+SSSLPGKLADC+S+ PEESEIFIVEGDSAGGS
Sbjct: 488 LSKSLNALKAALAAKRARELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGS 547
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQAILPLRGKILN+ER+DEAA+YKNEEIQNLI ALGLGVKGEDF KEALRYH
Sbjct: 548 AKQGRDRKFQAILPLRGKILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYH 607
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+ILTDADVDGAHIRTLLLTFF+RYQK LFDEGCIYVGVPPLYKVERGKQ YCYDDA+
Sbjct: 608 KIVILTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDAD 667
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LK++ ++FP+NA Y IQRFKGLGEMMP QLWETT++PE+RMLKQL +EDAAEANVVFSSL
Sbjct: 668 LKELVNTFPTNASYHIQRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSL 727
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RVD RK+LIQNAA++VNL+HLDI
Sbjct: 728 MGTRVDVRKQLIQNAASMVNLEHLDI 753
>gi|125525330|gb|EAY73444.1| hypothetical protein OsI_01322 [Oryza sativa Indica Group]
Length = 647
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/506 (80%), Positives = 462/506 (91%), Gaps = 1/506 (0%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY YSRGK +T LT L +S RQGTRIRFWPDK +FTT + FD NTIAGRIRELA
Sbjct: 143 EYRLNYSRGKAITMLTSRTLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELA 202
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLNP+LTIAL KE+ D + Q+NEY +AGGL EYV+WLNTDKK LHD + FRK++DGIT+
Sbjct: 203 FLNPELTIALTKEEDDLQV-QHNEYCYAGGLVEYVKWLNTDKKSLHDPIAFRKEMDGITV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D++LQWCSD+YSDT+LGYANSIRTIDGGTHI+G+K SLTRT+N+ KKSKT+KDKDISLS
Sbjct: 262 DVSLQWCSDSYSDTVLGYANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLS 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GEHVREG+TCII+V+VPNPEFEGQTKTRLGNPEVR++V+QSVQE LTEYLELHPDVLDSI
Sbjct: 322 GEHVREGMTCIIAVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
LSKSL+ALKAALAAKRAR+LVR KSVL+SSSLPGKLADC+S+ PEESEIFIVEGDSAGGS
Sbjct: 382 LSKSLNALKAALAAKRARELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQAILPLRGKILN+ER+DEAA+YKNEEIQNLI ALGLGVKGEDF KEALRYH
Sbjct: 442 AKQGRDRKFQAILPLRGKILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+ILTDADVDGAHIRTLLLTFF+RYQK LFDEGCIYVGVPPLYKVERGKQ YCYDDA+
Sbjct: 502 KIVILTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDAD 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LK++ ++FP+NA Y IQRFKGLGEMMP QLWETT++PE+RMLKQL +EDAAEANVVFSSL
Sbjct: 562 LKELVNTFPTNASYHIQRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSL 621
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RVD RK+LIQNAA++VNL+HLDI
Sbjct: 622 MGTRVDVRKQLIQNAASMVNLEHLDI 647
>gi|326518120|dbj|BAK07312.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 722
Score = 834 bits (2154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/506 (79%), Positives = 460/506 (90%), Gaps = 1/506 (0%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY Q YSRGKP+T L+ LP +S RQG+ IRFWPDK++FTT I+FD +TI+ RIRELA
Sbjct: 218 EYRQHYSRGKPLTMLSSTTLPDESSSRQGSCIRFWPDKEIFTTTIEFDFSTISSRIRELA 277
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLNP+LTI L KE+ D + Q+NEY +AGGL EYV WLNTDKKPLHD + FRK++DGI +
Sbjct: 278 FLNPELTITLTKEEQDAQV-QHNEYCYAGGLVEYVAWLNTDKKPLHDPIAFRKELDGIIV 336
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D++LQWCSD+YSDT+LGYANSIRTIDGGTHIEG+K SLTRT+N+ KKSK +KDKDISLS
Sbjct: 337 DVSLQWCSDSYSDTVLGYANSIRTIDGGTHIEGLKTSLTRTINNFAKKSKIMKDKDISLS 396
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GEHVREG+TCIISV+VPNPEFEGQTKTRLGNPEVR++V+QSVQE LTEYLELHPDVLDSI
Sbjct: 397 GEHVREGMTCIISVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSI 456
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
LSKSL+ALKAALAAKRAR+LVR KSVL+SSSLPGKLADC+S+ P E EIFIVEGDSAGGS
Sbjct: 457 LSKSLNALKAALAAKRARELVRTKSVLKSSSLPGKLADCASSNPAECEIFIVEGDSAGGS 516
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQAILPLRGKILN+ER+DEAAMYKNEEIQNLI LGLGVKGEDFKKEALRYH
Sbjct: 517 AKQGRDRKFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYH 576
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+ILTDADVDGAHIRTLLLTFF+RYQ+ LFDEGCIYVGVPPLYKVERGKQV YCYD+A+
Sbjct: 577 KIVILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLYKVERGKQVHYCYDEAD 636
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LK + ++FP+NA Y+ QRFKGLGEMMP+QLWETT++PE+R+LKQL +EDA EANVVFSSL
Sbjct: 637 LKDLVNTFPTNASYNTQRFKGLGEMMPLQLWETTMDPERRLLKQLTVEDAVEANVVFSSL 696
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MGARV+ RKELIQ AA++VNLDHLDI
Sbjct: 697 MGARVEYRKELIQKAASIVNLDHLDI 722
>gi|357130405|ref|XP_003566839.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like
[Brachypodium distachyon]
Length = 723
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/506 (79%), Positives = 456/506 (90%), Gaps = 1/506 (0%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY Q YSRGKP+TTL+ + +S RQGT IRFWPDK +FTT I FD NTI+ RIRELA
Sbjct: 219 EYRQSYSRGKPLTTLSSTTVYGESSTRQGTCIRFWPDKDIFTTTIGFDFNTISSRIRELA 278
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLNP+LTI L KE+ D E +NEY +AGGL EYV WLNTDKKPLHD + FRK++DGI +
Sbjct: 279 FLNPELTITLTKEEDDAEV-LHNEYCYAGGLVEYVAWLNTDKKPLHDPIAFRKELDGIIV 337
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D++LQWCSD+YSDT+LGYANSIRTIDGGTHIEG+K SLTRT+NS K SK +KDKDISLS
Sbjct: 338 DVSLQWCSDSYSDTVLGYANSIRTIDGGTHIEGLKTSLTRTVNSFAKNSKAIKDKDISLS 397
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GEHVREG+TCII+V+VPNPEFEGQTKTRLGNPEVRK+V+QSVQE LTEYLELHPDVLDSI
Sbjct: 398 GEHVREGMTCIIAVKVPNPEFEGQTKTRLGNPEVRKIVEQSVQENLTEYLELHPDVLDSI 457
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
LSKSL+ALKAALAAKRAR+LVR KSVL+SSSLPGKLADC+S+ P ESEIFIVEGDSAGGS
Sbjct: 458 LSKSLNALKAALAAKRARELVRTKSVLKSSSLPGKLADCASSNPAESEIFIVEGDSAGGS 517
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQAILPLRGKILN+ER+DEAAMYKNEEIQNLI LGLGVKGEDFKKEALRYH
Sbjct: 518 AKQGRDRKFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYH 577
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIIILTDADVDGAHIRTLLLTFF+RYQ+ LFDEGCIYVGVPPLYK+ERGKQ YCYD+A+
Sbjct: 578 KIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLYKIERGKQAHYCYDEAD 637
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LK++ ++FP+NA Y+ QRFKGLGEMMPVQLWETT++P +R+LKQL +EDAAEANVVFSSL
Sbjct: 638 LKELVNTFPTNASYNTQRFKGLGEMMPVQLWETTMDPARRLLKQLTVEDAAEANVVFSSL 697
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG+RVD RKELIQ AA +VNL+HLDI
Sbjct: 698 MGSRVDYRKELIQKAAGMVNLEHLDI 723
>gi|293336227|ref|NP_001168561.1| uncharacterized protein LOC100382343 [Zea mays]
gi|223949177|gb|ACN28672.1| unknown [Zea mays]
gi|414877013|tpg|DAA54144.1| TPA: hypothetical protein ZEAMMB73_725573 [Zea mays]
Length = 726
Score = 821 bits (2120), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/506 (79%), Positives = 457/506 (90%), Gaps = 2/506 (0%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E+ Q YSRGKP T LT L ++ RQGTRIRFWPDK +FTT I FD NTI+ RIRELA
Sbjct: 223 EHRQSYSRGKPTTRLTSSTLTGETSSRQGTRIRFWPDKDIFTTTIDFDFNTISSRIRELA 282
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLNP+LTI L KE+ Q NEY +AGGL EYV+WLNTDKKPLHD + FRK++DGIT+
Sbjct: 283 FLNPELTIILTKEEG--HTVQRNEYCYAGGLVEYVKWLNTDKKPLHDPIAFRKELDGITV 340
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D++LQW SD+YSDT+LGYANSIRTIDGGTHI+G+KASLTRT+N+L KKSKT+KDKDI+LS
Sbjct: 341 DVSLQWSSDSYSDTVLGYANSIRTIDGGTHIDGLKASLTRTINNLAKKSKTIKDKDITLS 400
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GEHVREG+TCIISV+VP+PEFEGQTKTRLGNPEVR++V+QSVQE LTEYLELHPDVLDSI
Sbjct: 401 GEHVREGMTCIISVKVPSPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSI 460
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
LSKSL+ALKAALAAKRAR+LVR KSVL+SSSLPGKLADC+S PEESEIFIVEGDSAGGS
Sbjct: 461 LSKSLNALKAALAAKRARELVRTKSVLKSSSLPGKLADCASANPEESEIFIVEGDSAGGS 520
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILN+ER+DEAAMYKNEEIQNLI ALGLGVKGEDFKKEALRYH
Sbjct: 521 AKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILALGLGVKGEDFKKEALRYH 580
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+ILTDADVDGAHIRTLLLTFF+RYQ+ LFDEGCIYVGVPPLYKVERGK YCYDDA+
Sbjct: 581 KIVILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLYKVERGKLAHYCYDDAD 640
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LK++ ++FP+NA Y IQRFKGLGEMMP QLWETT++PE+R+LKQL +EDAAEANVVFSSL
Sbjct: 641 LKEIVNTFPANASYHIQRFKGLGEMMPAQLWETTMDPERRLLKQLRVEDAAEANVVFSSL 700
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RV+ RKELIQ AA+++N+D LDI
Sbjct: 701 MGTRVEYRKELIQKAASMINIDQLDI 726
>gi|357509407|ref|XP_003624992.1| DNA gyrase subunit B [Medicago truncatula]
gi|355500007|gb|AES81210.1| DNA gyrase subunit B [Medicago truncatula]
Length = 839
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/620 (67%), Positives = 469/620 (75%), Gaps = 113/620 (18%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
+EY Q YSRGKPVTTL C +LP ++KDRQGTRI+FWPDK+VFTTAI+F++NTIAGRIREL
Sbjct: 220 LEYTQTYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIREL 279
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK----------------- 103
AFLNPKLTIALRKED+DPEK Q NEYF+AGGL EYVQ+LNTDK
Sbjct: 280 AFLNPKLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKESEGLFESDNGRWEGRF 339
Query: 104 ---------------------------KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTM 136
K +HDV+ FRK++DGIT+D+ALQWC DAYSDT+
Sbjct: 340 WYSGVSESAADVSALICFSNSLAWSVLKAVHDVLSFRKEIDGITVDIALQWCEDAYSDTI 399
Query: 137 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVRE--------- 187
LGYANSIRT+DGGTHI+G+KASLTRTLNSLGKKSK +K + G +
Sbjct: 400 LGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKQFQLFFYGHDSKRQNEKRNSYY 459
Query: 188 -----GL----------------TCII---------------------------SVRVPN 199
GL TC + SV+VPN
Sbjct: 460 LLHNFGLWIVLLNRYQVIGRFRNTCFMPLTQNKCQEKDITLSGEHVREGLTCVVSVKVPN 519
Query: 200 PEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRAR 259
PEFEGQTKTRLGNPEVRKVVDQS+QEYLTEYLELHPDVLDS+LSK+L+A KAALAAKRAR
Sbjct: 520 PEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSKALNAFKAALAAKRAR 579
Query: 260 DLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQ-------- 311
+LVRQKSVLRSSSLPGKLADCSS+ PE+ EIFIVEGDSAGGSAKQGRDRRFQ
Sbjct: 580 ELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQGRDRRFQVKYTLSDE 639
Query: 312 ----AILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 367
AILPLRGKILN+ER+DEAAMYKNEEIQNLI LGLGVKGEDFKK+ALRYHKIIILT
Sbjct: 640 SLQSAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILT 699
Query: 368 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKS 427
DADVDGAHIRTLLLTFFYRYQ+ LFDEG IYVGVPPLYKV RGKQV YCYD+A+LKK+KS
Sbjct: 700 DADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLKKLKS 759
Query: 428 SFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVD 487
SF NA Y++QRFKGLGEMMP+QLWETT++PEQR+LK+L +EDAAEAN+VFSSLMGARVD
Sbjct: 760 SFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLMGARVD 819
Query: 488 TRKELIQNAANLVNLDHLDI 507
RKELIQNAAN+++LD LDI
Sbjct: 820 VRKELIQNAANMIDLDQLDI 839
>gi|148906969|gb|ABR16629.1| unknown [Picea sitchensis]
Length = 737
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/506 (72%), Positives = 444/506 (87%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E++Q ++ GKPVT LT + + + K RQGTR+RFWPDK+VFTT +FD+NTI GR RELA
Sbjct: 232 EWNQTFACGKPVTELTSNEILGEFKFRQGTRVRFWPDKEVFTTTTEFDYNTIVGRARELA 291
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLNP++ I L++E+ D E YNEY +AGGL EYV WLN DK P+ + F ++ DG+ +
Sbjct: 292 FLNPQVKITLKQENKDAENVTYNEYHYAGGLVEYVCWLNRDKTPILKPISFTREKDGVIV 351
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQWCSDAY+DT+LGYANSIRT DGG+H++GVK++LTRT N+LG+KSK +K+KD +LS
Sbjct: 352 NVALQWCSDAYTDTLLGYANSIRTSDGGSHMDGVKSALTRTFNNLGRKSKLIKEKDENLS 411
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GEHVREGLT I+SV+VP PEFEGQTKTRLGNPEVR++VDQ+VQEYLTEYLE +P VL+SI
Sbjct: 412 GEHVREGLTGIVSVKVPKPEFEGQTKTRLGNPEVRRIVDQAVQEYLTEYLECNPGVLESI 471
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
LSK+L+A KAA+AAK+AR+LVR+KSVLR S+LPGKLADCS++ P E+EIFIVEG+SAGGS
Sbjct: 472 LSKALNAYKAAMAAKKARELVRRKSVLRPSALPGKLADCSASDPREAEIFIVEGESAGGS 531
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI LGLG+KGEDFKK+ALRYH
Sbjct: 532 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLILGLGLGLKGEDFKKDALRYH 591
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIIILTDADVDGAHIRTLLLTFF+RYQ+ LF+EG IYVGVPPLYKVERG+Q YC+D+ E
Sbjct: 592 KIIILTDADVDGAHIRTLLLTFFFRYQRALFEEGYIYVGVPPLYKVERGRQAHYCFDEDE 651
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LKK++ +FPSNA Y+IQRFKGLGEMMP+QLWETTL+P R LKQL +EDAAEAN+VFS L
Sbjct: 652 LKKLQKTFPSNASYNIQRFKGLGEMMPLQLWETTLDPATRKLKQLTVEDAAEANMVFSLL 711
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RV+ RKELI+N+A+ ++++ LDI
Sbjct: 712 MGNRVEPRKELIENSASKISIEKLDI 737
>gi|168067741|ref|XP_001785766.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662596|gb|EDQ49430.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 642
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/511 (67%), Positives = 438/511 (85%), Gaps = 5/511 (0%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ-----VFTTAIQFDHNTIAGR 56
EY Q + GK V+ L+ LP D K R GT ++F PDKQ +FT+ +FD++TI+GR
Sbjct: 132 EYKQSFEFGKSVSHLSGSRLPRDQKGRTGTLVKFLPDKQGKSFLMFTSTTEFDYSTISGR 191
Query: 57 IRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV 116
RELAFLNP++TI L+++ ++PEK + N Y F+GGL EYV WLN DK+ LH+ + +
Sbjct: 192 TRELAFLNPQVTIYLKQDHANPEKIRSNTYHFSGGLSEYVLWLNNDKERLHEPISIHRKK 251
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
+GI ID++LQWC+D+Y+DT++GYANSIRT DGGTH++G+KA++TRTLN+LG+K+K +K+K
Sbjct: 252 EGIIIDVSLQWCADSYTDTIIGYANSIRTSDGGTHLDGIKAAVTRTLNTLGRKAKILKEK 311
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
D +LSG+H REGLTC++SV+VPNPEFEGQTKTRLGNPEVR++VDQ+VQE +TEYLE HP+
Sbjct: 312 DENLSGDHAREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRRLVDQAVQELVTEYLEQHPN 371
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
L++ILSK+L A +AA+AAK+AR+LVR+K+VL+SS LPGKL+DCS T P+ SEIFIVEGD
Sbjct: 372 TLEAILSKALQAFRAAMAAKKARELVRRKNVLKSSMLPGKLSDCSCTDPKNSEIFIVEGD 431
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SAGGSAKQGRDRR+QAILPLRGKILN+ERKD+AA+YKN+EIQNLI ALGLGVKGE+F K+
Sbjct: 432 SAGGSAKQGRDRRYQAILPLRGKILNIERKDDAAIYKNQEIQNLILALGLGVKGEEFSKD 491
Query: 357 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 416
LRYHKIIILTDADVDGAHIRTLLLTFF+RYQ+ LF+ GCIYVGVPPLYKVERGKQ YC
Sbjct: 492 LLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFESGCIYVGVPPLYKVERGKQAHYC 551
Query: 417 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
+++A+LK + +FPSNA Y+IQRFKGLGEMMP QLWETTL+P QRMLK L +EDAAEA++
Sbjct: 552 FNEADLKNLLKTFPSNASYNIQRFKGLGEMMPQQLWETTLDPTQRMLKLLTLEDAAEASM 611
Query: 477 VFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+FS+LMG +V+ RKELIQN A+ + L++LD+
Sbjct: 612 MFSTLMGDKVEPRKELIQNNASRMKLENLDL 642
>gi|168056555|ref|XP_001780285.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668339|gb|EDQ54949.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 640
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/509 (67%), Positives = 436/509 (85%), Gaps = 3/509 (0%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ---VFTTAIQFDHNTIAGRIR 58
EY Q + GK V+ L+ LP D K R GTR++F PDKQ +FT+ +FD+NTI+GR R
Sbjct: 132 EYRQSFEFGKAVSPLSAFPLPNDQKGRTGTRVKFLPDKQGKQLFTSTTEFDYNTISGRAR 191
Query: 59 ELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDG 118
ELAFLNP++TI L +E ++ EK + N Y F+GGL EYV WLN DK+ LH+ + ++ +G
Sbjct: 192 ELAFLNPQVTINLMQEHANSEKVRSNAYHFSGGLNEYVLWLNNDKERLHEPISIHREREG 251
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ ID+ALQW +D Y+DT+LGYANSIRT DGGTH++G+KA++TRTLN+LG+K+K +K+KD
Sbjct: 252 VAIDVALQWSADQYTDTILGYANSIRTSDGGTHLDGMKAAVTRTLNTLGRKAKILKEKDE 311
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSG+H REGLTC+++V+VPNPEFEGQTKTRLGNPEVR++VDQ+VQE +TEYLE HP+ L
Sbjct: 312 NLSGDHAREGLTCVVAVKVPNPEFEGQTKTRLGNPEVRRIVDQAVQELVTEYLEQHPNTL 371
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
++ILSK+L A +AA+AAK+AR+LVR+K+VL+SS LPGKL+DCS T P +EIFIVEGDSA
Sbjct: 372 EAILSKALQAFRAAMAAKKARELVRRKNVLKSSMLPGKLSDCSCTDPRNAEIFIVEGDSA 431
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRRFQAILPLRGKILN+ERKD+AA+YKN+EIQNLI ALGLGVKGE+F K++L
Sbjct: 432 GGSAKQGRDRRFQAILPLRGKILNIERKDDAAIYKNQEIQNLILALGLGVKGEEFSKDSL 491
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHKIIILTDADVDGAHIRTLLLTFF+RYQ+ LF+ GCIYVGVPPLYKVERGKQ YC++
Sbjct: 492 RYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFEAGCIYVGVPPLYKVERGKQAHYCFN 551
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+++LK V +FPSNA Y+IQRFKGLGEMMP QLWETTL+P+QRMLK L +EDAAEA+++F
Sbjct: 552 ESDLKNVLKTFPSNASYNIQRFKGLGEMMPQQLWETTLDPQQRMLKLLTLEDAAEASMMF 611
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
S+LMG +V+ RKELI+ A+ + L++LD+
Sbjct: 612 STLMGDKVEPRKELIRTNASRMKLENLDL 640
>gi|302820792|ref|XP_002992062.1| hypothetical protein SELMODRAFT_162108 [Selaginella moellendorffii]
gi|300140184|gb|EFJ06911.1| hypothetical protein SELMODRAFT_162108 [Selaginella moellendorffii]
Length = 618
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/506 (63%), Positives = 409/506 (80%), Gaps = 4/506 (0%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY Q + RGK V +LT LP +S R GT ++F PD +VFTT FD N ++ R+RE+A
Sbjct: 117 EYRQVFQRGKAVGSLTTRSLPRESSSRTGTCVKFLPDDEVFTTTTAFDPNIVSSRLREVA 176
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLNP++TI L++E + ++ + F GGL EYV+WLN DK +HD + F + D I++
Sbjct: 177 FLNPEVTINLKEESATTDE----VFHFGGGLVEYVEWLNQDKTKIHDPISFSVEKDDISV 232
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++QWCSDAYSDT+LGYANSIRT DGGTH++G+K LTRTLN LG++SK +++K +LS
Sbjct: 233 NVSMQWCSDAYSDTLLGYANSIRTADGGTHLDGLKMGLTRTLNILGRRSKAIREKGDNLS 292
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GEH REGLTC+ISV+VP PEFEGQTKTRLGN EVRK+V+Q+V E +TEYLE PD L++I
Sbjct: 293 GEHAREGLTCVISVKVPEPEFEGQTKTRLGNVEVRKIVEQAVIEQVTEYLEFRPDTLEAI 352
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
LSK+L A KAA AAK+AR+LVR+K+VL++S+LPGKLADC+S+ P SEIFIVEG+SAGGS
Sbjct: 353 LSKALQAYKAAEAAKKARELVRRKNVLKTSTLPGKLADCTSSDPRVSEIFIVEGESAGGS 412
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPL+GKILN+ERKD+AA+YKN+EIQ+LI ALGLG +GE+F K+ LRYH
Sbjct: 413 AKQGRDRAFQAILPLKGKILNIERKDDAAIYKNQEIQDLIVALGLGTRGEEFHKDTLRYH 472
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIIILTDADVDGAHIRTLLLTFF+RYQ+ LFD G IYVGVPPLYKVERGK YCY + E
Sbjct: 473 KIIILTDADVDGAHIRTLLLTFFFRYQRALFDGGYIYVGVPPLYKVERGKHAHYCYSENE 532
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ + +F +NA Y+IQRFKGLGEMMP+QLW+TTL+P +RMLK+L +EDA EA+ FS L
Sbjct: 533 LQGLLGTFAANAPYNIQRFKGLGEMMPLQLWDTTLDPSKRMLKKLTLEDAVEASFTFSRL 592
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG +V+ RKELI +A +LD+
Sbjct: 593 MGDKVEPRKELILKSAAQFKQQNLDV 618
>gi|302761372|ref|XP_002964108.1| hypothetical protein SELMODRAFT_405784 [Selaginella moellendorffii]
gi|300167837|gb|EFJ34441.1| hypothetical protein SELMODRAFT_405784 [Selaginella moellendorffii]
Length = 723
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/506 (63%), Positives = 409/506 (80%), Gaps = 4/506 (0%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY Q + RGK V +LT LP +S R GT ++F PD +VFTT FD N ++ R+RE+A
Sbjct: 222 EYRQVFQRGKAVGSLTTRSLPRESSSRTGTCVKFLPDDEVFTTTTAFDPNIVSSRLREVA 281
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLNP++TI L++E + ++ + F GGL EYV+WLN DK +HD + F + D I++
Sbjct: 282 FLNPEVTINLKEESATTDE----VFHFGGGLVEYVEWLNQDKTKIHDPISFSVEKDDISV 337
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++QWCSDAYSDT+LGYANSIRT DGGTH++G+K LTRTLN LG++SK +++K +LS
Sbjct: 338 NVSMQWCSDAYSDTLLGYANSIRTADGGTHLDGLKMGLTRTLNILGRRSKAIREKGDNLS 397
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GEH REGLTC+ISV+VP PEFEGQTKTRLGN EVRK+V+Q+V E +TEYLE PD L++I
Sbjct: 398 GEHAREGLTCVISVKVPEPEFEGQTKTRLGNVEVRKIVEQAVIEQVTEYLEFRPDTLEAI 457
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
LSK+L A KAA AAK+AR+LVR+K+VL++S+LPGKLADC+S+ P SEIFIVEG+SAGGS
Sbjct: 458 LSKALQAYKAAEAAKKARELVRRKNVLKTSTLPGKLADCTSSDPRVSEIFIVEGESAGGS 517
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPL+GKILN+ERKD+AA+YKN+EIQ+LI ALGLG +GE+F K+ LRYH
Sbjct: 518 AKQGRDRAFQAILPLKGKILNIERKDDAAIYKNQEIQDLIVALGLGTRGEEFHKDTLRYH 577
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIIILTDADVDGAHIRTLLLTFF+RYQ+ LFD G IYVGVPPLYKVERGK YCY + E
Sbjct: 578 KIIILTDADVDGAHIRTLLLTFFFRYQRALFDGGYIYVGVPPLYKVERGKHAHYCYSENE 637
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ + +F +NA Y+IQRFKGLGEMMP+QLW+TTL+P +RMLK+L +EDA EA+ FS L
Sbjct: 638 LQGLLGTFAANAPYNIQRFKGLGEMMPLQLWDTTLDPSKRMLKKLTLEDAVEASFTFSRL 697
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG +V+ RKELI +A +LD+
Sbjct: 698 MGDKVEPRKELILKSAAQFKQQNLDV 723
>gi|427705874|ref|YP_007048251.1| DNA gyrase subunit B [Nostoc sp. PCC 7107]
gi|427358379|gb|AFY41101.1| DNA gyrase subunit B [Nostoc sp. PCC 7107]
Length = 645
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 307/509 (60%), Positives = 389/509 (76%), Gaps = 7/509 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG PVT L + R GT + F PD Q+FTT I+FD T+AGR+RELA+
Sbjct: 140 HTQRYERGVPVTELVAKPY---KEARTGTSVTFKPDTQIFTTGIEFDFITLAGRLRELAY 196
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDG 118
LN + I R E + + Y + GG++EY+ ++N DK+PLH+ ++ + +
Sbjct: 197 LNAGVKITFTDNRLELLKSDTPKIETYEYRGGIKEYIAYMNRDKQPLHEEIIYVQGERSN 256
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ I++ALQWC+DAY+D +LG+AN+IRT+DGGTH+EG+KA LTRTLN++ +K +K+ +
Sbjct: 257 VQIEVALQWCTDAYTDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKENEP 316
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSGEHVREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYLE HP +
Sbjct: 317 NLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFHPGIA 376
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
DSIL K++ A KAA AA+ AR+LVR+KSVL SS LPGKLADCSS P ESEI+IVEGDSA
Sbjct: 377 DSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSSRDPSESEIYIVEGDSA 436
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRR QAILPLRGKILN+E+ D++ +YKN EIQ LI ALGLGVKGE+F L
Sbjct: 437 GGSAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEIQALITALGLGVKGEEFDSTQL 496
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+III+TDADVDGAHIRTLLLTFFYRYQ++L ++G IY+ PPLYKVERGK +YCY
Sbjct: 497 RYHRIIIMTDADVDGAHIRTLLLTFFYRYQRSLIEQGFIYIACPPLYKVERGKNHEYCYS 556
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D EL++ + FP+NA Y+IQRFKGLGEMMP QLW TT+NPE R LKQ+ IEDAAEA+ +F
Sbjct: 557 DRELQQAIAKFPANANYTIQRFKGLGEMMPAQLWTTTMNPETRTLKQVEIEDAAEADRIF 616
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ LMG RV R+E I+ + +N LDI
Sbjct: 617 TILMGDRVAPRREFIETYGSKLNFAELDI 645
>gi|427729923|ref|YP_007076160.1| DNA gyrase subunit B [Nostoc sp. PCC 7524]
gi|427365842|gb|AFY48563.1| DNA gyrase, B subunit [Nostoc sp. PCC 7524]
Length = 645
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 302/509 (59%), Positives = 391/509 (76%), Gaps = 7/509 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG PVT L + R GT + F PD Q+FTT +FD+ T+A R+RELA+
Sbjct: 140 HTQRYERGVPVTELIAKPY---KEARTGTSVTFKPDVQIFTTGTEFDYLTLANRLRELAY 196
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDG 118
LN + I R E E + Y + GG+ EY+ ++N +K+PLH+ ++ + + +
Sbjct: 197 LNAGVKITFTDNRLELLKSETPKVEVYEYKGGIREYIAYMNREKQPLHEEIIYVQGERNN 256
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ +++ALQWC+DAY+D +LG+AN+IRT+DGGTH+EG+KA LTRTLN++ +K +K+ D
Sbjct: 257 VQVEVALQWCTDAYTDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKLKENDS 316
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSGEHVREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYLE HP +
Sbjct: 317 NLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFHPSIA 376
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
DS+L K++ A KAA AA+ AR+LVR+KSVL SS LPGKLADCSS P ESEIFIVEGDSA
Sbjct: 377 DSVLDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSSRDPGESEIFIVEGDSA 436
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRR QAILPLRGKILN+E+ D++ +YKN E+Q LI ALGLGVKGE+F L
Sbjct: 437 GGSAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEVQALITALGLGVKGEEFDSSQL 496
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+I+I+TDADVDGAHIRTLLLTFFYRYQ++L ++G IY+ PPLYKVERG+ +YCY
Sbjct: 497 RYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLIEQGFIYIACPPLYKVERGRNHEYCYS 556
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D EL+++ + FP+NA Y+IQRFKGLGEMMP QLW+TT+NP+ R LKQ+ IEDAAEA+ +F
Sbjct: 557 DRELQEILAKFPANANYTIQRFKGLGEMMPGQLWDTTMNPQTRTLKQVEIEDAAEADRIF 616
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ LMG RV R+E I+ + +NL LDI
Sbjct: 617 TILMGDRVAPRREFIETYGSKLNLVDLDI 645
>gi|17232757|ref|NP_489305.1| DNA gyrase subunit B [Nostoc sp. PCC 7120]
gi|17134404|dbj|BAB76964.1| DNA gyrase B subunit [Nostoc sp. PCC 7120]
Length = 645
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 302/509 (59%), Positives = 392/509 (77%), Gaps = 7/509 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG PVT L + + R GT + F PD Q+FT +I+FD+ T++GR+RELA+
Sbjct: 140 HTQRYERGVPVTELITNPY---KEARTGTSVTFKPDTQIFTNSIEFDYITLSGRLRELAY 196
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDG 118
LN + I R E + + Y + GG++EY+ ++N DK+PLH+ ++ + + +
Sbjct: 197 LNAGVKITFTDNRLELLKSDTPKVESYEYKGGIKEYIAYMNRDKQPLHEEIIYVQGERNN 256
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ I+++LQWC+DAY+D +LG+AN+IRTIDGGTH+EG+KA LTRTLN++ +K +K+ +
Sbjct: 257 VQIEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTRTLNTIARKRNKIKEHEP 316
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSGEHVREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYLE HP +
Sbjct: 317 NLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFHPGIA 376
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
DSIL K++ A KAA AA+ AR+LVR+KSVL SS LPGKLADCSS P ESEI+IVEGDSA
Sbjct: 377 DSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSSRDPSESEIYIVEGDSA 436
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRR QAILPLRGKILN+E+ D++ +YKN EIQ LI ALGLGVKGE+F L
Sbjct: 437 GGSAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEIQALITALGLGVKGEEFDSTQL 496
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+III+TDADVDGAHIRTL+LTFFYRYQ+ L ++G IY+ PPLYKVERG+ +YCY
Sbjct: 497 RYHRIIIMTDADVDGAHIRTLILTFFYRYQRALIEQGFIYIACPPLYKVERGRNYEYCYS 556
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+ EL++ + FP+NA Y+IQRFKGLGEMMP QLW TT+NPE R LK++ IEDAAEA+ +F
Sbjct: 557 ERELQQAIAKFPANANYTIQRFKGLGEMMPEQLWTTTMNPETRTLKRVEIEDAAEADRIF 616
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ LMG RV R+E I+ + +NL LDI
Sbjct: 617 TILMGDRVAPRREFIETYGSKLNLTDLDI 645
>gi|254424108|ref|ZP_05037826.1| DNA gyrase, B subunit [Synechococcus sp. PCC 7335]
gi|196191597|gb|EDX86561.1| DNA gyrase, B subunit [Synechococcus sp. PCC 7335]
Length = 645
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 292/509 (57%), Positives = 386/509 (75%), Gaps = 8/509 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ +G P+ L + GT++ F PD +FT ++FD++TIA R+RELA+
Sbjct: 141 HTQRFEQGNPIGKLKTS----KGSTKTGTQVTFKPDATIFTHTVEFDYDTIARRLRELAY 196
Query: 63 LNPKLTIALRKEDSD---PEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDG 118
LN + I D +K Q + YF+ GG+ EYV+++N +K+PLH DV+ D +G
Sbjct: 197 LNAGVDITFTDYRLDLIKADKPQVSHYFYEGGIREYVEYINNEKEPLHPDVIYVNSDKNG 256
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ ++ ALQWC DA+SD ++G+AN+IRT+DGGTH+EG+K LTRT+N + +K K KD +
Sbjct: 257 VQVEAALQWCGDAFSDNLMGFANNIRTVDGGTHLEGLKTVLTRTMNVIARKRKKRKDTES 316
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+++GE++REGLT ++SV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYL+ +P V
Sbjct: 317 NMAGENIREGLTAVVSVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEALTEYLDFNPSVA 376
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
D+IL K++ A AA AAK+ARDLVR+KSVL SS+LPGKL+DCSS P ESEIFIVEGDSA
Sbjct: 377 DAILEKAIQAFNAAEAAKKARDLVRRKSVLESSTLPGKLSDCSSRDPGESEIFIVEGDSA 436
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN E+Q+LI ALGLG+KGEDF + L
Sbjct: 437 GGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEVQSLITALGLGIKGEDFAPDTL 496
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+I ++TDADVDGAHIRTLLLTFFYRYQ+ L D+G IY+ PPLYK+ERGK YCY
Sbjct: 497 RYHRICLMTDADVDGAHIRTLLLTFFYRYQRDLVDQGYIYIACPPLYKLERGKNHTYCYS 556
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+ EL+ + P+NA Y+IQRFKGLGEMMP QLW+TT+NPE R LK++ IEDAAEA+ +F
Sbjct: 557 EKELQDGIDAMPTNAKYNIQRFKGLGEMMPQQLWDTTMNPETRTLKRVEIEDAAEADRIF 616
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ LMG RV R++ I+ +N+ LDI
Sbjct: 617 TVLMGDRVAPRRDFIETYGPRLNMADLDI 645
>gi|427718008|ref|YP_007066002.1| DNA gyrase subunit B [Calothrix sp. PCC 7507]
gi|427350444|gb|AFY33168.1| DNA gyrase subunit B [Calothrix sp. PCC 7507]
Length = 645
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 302/507 (59%), Positives = 392/507 (77%), Gaps = 7/507 (1%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
Q+Y RG PVT L + R GT F PD Q+F+T I+FD+ T++GR+RELA+LN
Sbjct: 142 QRYERGVPVTELQAKPY---KEARTGTSTTFKPDTQIFSTGIEFDYITLSGRLRELAYLN 198
Query: 65 PKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
+ I R E + + Y + GG++EY+ ++N +K+PLH+ ++ + + + +
Sbjct: 199 AGVKITFTDHRLELLKSDTAKVETYEYRGGIKEYIAYMNREKQPLHEEIIYVQGERNNVQ 258
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
I+++LQWC+DAY+D +LG+AN+IRT+DGGTH+EG+KA LTRTLN++ +K +K+ + +L
Sbjct: 259 IEVSLQWCTDAYTDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKENEPNL 318
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGEHVREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYLE HP V DS
Sbjct: 319 SGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFHPGVADS 378
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
IL K++ A KAA AA+ AR+LVR+KSVL SS LPGKLADCSS P ESEIFIVEGDSAGG
Sbjct: 379 ILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSSRDPSESEIFIVEGDSAGG 438
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDRR QAILPLRGKILN+E+ D+A +YKN E+Q+LI ALGLGVKGE+F LRY
Sbjct: 439 SAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEVQSLITALGLGVKGEEFDSTQLRY 498
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
H+I+I+TDADVDGAHIRTLLLTFFYRYQ+ L ++G IY+ PPL+KVERG+ +YCY +
Sbjct: 499 HRIVIMTDADVDGAHIRTLLLTFFYRYQRALIEQGFIYIACPPLFKVERGRNHEYCYSER 558
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL++ ++FPSNA Y+IQRFKGLGEMMP QLW+TT+NPE R +KQ+ IEDAAEA+ +F+
Sbjct: 559 ELQQHIATFPSNANYNIQRFKGLGEMMPAQLWDTTMNPESRKMKQVEIEDAAEADRIFTI 618
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMG RV R+E I+ + +NL LDI
Sbjct: 619 LMGDRVAPRREFIETYGSKLNLTDLDI 645
>gi|119487794|ref|ZP_01621303.1| DNA topoisomerase IV subunit B [Lyngbya sp. PCC 8106]
gi|119455627|gb|EAW36764.1| DNA topoisomerase IV subunit B [Lyngbya sp. PCC 8106]
Length = 645
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 306/510 (60%), Positives = 390/510 (76%), Gaps = 7/510 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y Q+Y RG PV L P K + GT ++F PD +FTT I+FD+ TIA R+RELA
Sbjct: 139 QYTQRYQRGVPVDELQSK--PSQGK-QTGTSVQFLPDTTIFTTGIEFDYATIANRLRELA 195
Query: 62 FLNPKLTIALRKEDSDP---EKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
+LN + I L D E+ + + + GG+ EY+ ++N +K+PLH DV+ + +
Sbjct: 196 YLNAGVRITLTDNRLDLIQLEEAKTESFCYEGGIREYIAYMNREKQPLHEDVIYVSGERN 255
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
+ I++ALQWC DAYSD +LG+AN+IRTIDGGTH+EG+KA LTRT+N+ +K +K+ +
Sbjct: 256 NVQIEVALQWCVDAYSDNILGFANNIRTIDGGTHLEGLKAVLTRTMNNFARKRNKLKENE 315
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L GE+VREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYL+ HP +
Sbjct: 316 SNLGGENVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLDFHPHI 375
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
D++L K++ A KAA AA+RARDLVR+KSVL SS LPGKLADCS+ P ESEIF+VEGDS
Sbjct: 376 ADAVLEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCSTRIPAESEIFLVEGDS 435
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRR QAILPLRGKILN+E+ D++ +YKN EIQ+LI ALGLG++GEDF
Sbjct: 436 AGGSAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEIQSLITALGLGIRGEDFDSSQ 495
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHKIII+TDADVDGAHIRTLLLTFFYRYQ+ L ++G IY+ PPLYKVERG+ YCY
Sbjct: 496 LRYHKIIIMTDADVDGAHIRTLLLTFFYRYQRELVEQGFIYIACPPLYKVERGRNHYYCY 555
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+D EL++ + FPSNA Y+IQRFKGLGEMMP QLW TT+NPE RM+KQ+ +EDAA+A+ V
Sbjct: 556 NDRELQERLAEFPSNANYNIQRFKGLGEMMPEQLWNTTMNPETRMIKQVEVEDAAQADNV 615
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG RV R+E I+ A +NL LDI
Sbjct: 616 FTVLMGDRVAPRREFIETNAPRLNLVDLDI 645
>gi|354567214|ref|ZP_08986384.1| DNA gyrase, B subunit [Fischerella sp. JSC-11]
gi|353543515|gb|EHC12973.1| DNA gyrase, B subunit [Fischerella sp. JSC-11]
Length = 645
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 303/509 (59%), Positives = 387/509 (76%), Gaps = 7/509 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG PVT L ++ R GT + F PD Q+FTT +FD T+A R+RELA+
Sbjct: 140 HTQRYERGIPVTEL---IVKPYKDHRTGTSVSFLPDSQIFTTGTEFDFTTLASRLRELAY 196
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDG 118
LN + I R + ++ + Y + GG+ EY+ ++N DK+PLH+ V+ + + +
Sbjct: 197 LNAGVKITFTDHRLQLLKSDQPKVETYEYKGGIREYITYINADKQPLHEEVIYVQGERNN 256
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ +++ALQWC+DAY+D +LG+AN+IRT+DGGTH+EG+KA LTRTLN++ +K +KD +
Sbjct: 257 VQVEVALQWCTDAYTDNILGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKLKDSEP 316
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSGEHVREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYLE HP V
Sbjct: 317 NLSGEHVREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGETLTEYLEFHPSVA 376
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
D+IL K++ A KAA AA+ AR+LVR+KSVL SS LPGKLADCSS P ESEI++VEGDSA
Sbjct: 377 DAILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSSRDPRESEIYLVEGDSA 436
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLGVKGE+F L
Sbjct: 437 GGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLGVKGEEFDASQL 496
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+I+I+TDADVDGAHIRTLLLTFFYRYQ+ L ++G +Y+ PPLYK+ERGK +YCY
Sbjct: 497 RYHRIVIMTDADVDGAHIRTLLLTFFYRYQRALIEQGYVYIACPPLYKIERGKNYKYCYS 556
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D E + S P NA Y+IQRFKGLGEMMP QLW TT+NPE R LKQ+ IEDAAEA+ +F
Sbjct: 557 DREKDQYISQLPENANYTIQRFKGLGEMMPEQLWSTTMNPETRTLKQVEIEDAAEADRIF 616
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ LMG RV R+E I+ + +NL LDI
Sbjct: 617 TILMGDRVAPRREFIETYGSKLNLKDLDI 645
>gi|428309704|ref|YP_007120681.1| DNA gyrase subunit B [Microcoleus sp. PCC 7113]
gi|428251316|gb|AFZ17275.1| DNA gyrase subunit B [Microcoleus sp. PCC 7113]
Length = 642
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 306/508 (60%), Positives = 393/508 (77%), Gaps = 8/508 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF-TTAIQFDHNTIAGRIRELA 61
+ Q+Y RG PVT L + + R GT + F PD Q+F TT I+FD+ T+AGR+RELA
Sbjct: 140 HTQRYERGIPVTEL---IGKPSKEARTGTSVSFKPDTQIFVTTGIEFDYTTLAGRVRELA 196
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
+LN + I D+ E+ + Y++ GG++EYV ++N +K+PLH +++ + + +G
Sbjct: 197 YLNAGVRITF--TDNRLEQPRQETYYYEGGIQEYVAYMNREKEPLHQEIIYIQGERNGTQ 254
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++ALQWC DAYSD +LG+AN+IRTIDGGTH+EG+KA LTRT+N++ +K +K+ + +L
Sbjct: 255 VEVALQWCVDAYSDNLLGFANNIRTIDGGTHLEGLKAVLTRTMNAIARKRNKIKEGEPNL 314
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
GE+VREGLT +ISV+VP+PEFEGQTKT+LGN EVR +V+ V E LTEYLE P+V D+
Sbjct: 315 GGENVREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVESLVGEVLTEYLEFRPNVADA 374
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
+L K++ A KAA AA+RARDLVR+KSVL SS LPGKLADCSS P ESEIFIVEGDSAGG
Sbjct: 375 VLDKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCSSRDPSESEIFIVEGDSAGG 434
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR+FQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KG++F LRY
Sbjct: 435 SAKQGRDRQFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGDEFDPSQLRY 494
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
H+I+I+TDADVDGAHIRTLLLTFFYRYQ++L D+G IY+ PPLYKVERG+ YCY D
Sbjct: 495 HRIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYIYIACPPLYKVERGRNHYYCYSDR 554
Query: 421 ELKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL ++ FPSNA Y+IQRFKGLGEMMP QLWETT+NP R LK++ IEDAAEA+ VF+
Sbjct: 555 ELNNLIQHEFPSNASYTIQRFKGLGEMMPTQLWETTMNPGTRTLKRVEIEDAAEADRVFT 614
Query: 480 SLMGARVDTRKELIQNAANLVNLDHLDI 507
LMG RV R+E I+ + +NL LDI
Sbjct: 615 VLMGDRVGPRREFIETYGSRLNLTDLDI 642
>gi|186686392|ref|YP_001869588.1| DNA gyrase subunit B [Nostoc punctiforme PCC 73102]
gi|186468844|gb|ACC84645.1| DNA gyrase, B subunit [Nostoc punctiforme PCC 73102]
Length = 645
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 301/511 (58%), Positives = 394/511 (77%), Gaps = 15/511 (2%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
Q+Y RG PVT L + R GT + F PD Q+FTT+I+FD+ T++GR+RELA+LN
Sbjct: 142 QRYERGIPVTELQTKPY---KEARTGTSVTFKPDTQIFTTSIEFDYITLSGRLRELAYLN 198
Query: 65 PKLTIA-------LRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDV 116
+ I L K D+ P+ YN + GG++EY+ ++N +K+PLH+ ++ + +
Sbjct: 199 AGVKITFTDNRLELLKSDT-PKVESYN---YKGGIKEYIAYMNREKQPLHEEIIYVQGER 254
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
+ + ++++LQWC+DAY+D +LG+AN+IRT+DGGTH+EG+KA LTRTLN++ +K +K+
Sbjct: 255 NNVQVEVSLQWCTDAYTDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKEN 314
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
+ +LSGEHVREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYLE HP
Sbjct: 315 EPNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFHPA 374
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
+ DSIL K++ A KAA AA+ AR+LVR+KSVL SS LPGKLADCSS P ESEIFIVEGD
Sbjct: 375 IADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSSRDPSESEIFIVEGD 434
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SAGGSAKQGRDRR QAILPLRGKILN+E+ D+A +YKN E+Q+LI ALGLGVKG++F
Sbjct: 435 SAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEVQSLITALGLGVKGDEFDSN 494
Query: 357 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 416
LRYH+I+I+TDADVDGAHIRTLLLTFFYRYQ++L ++G IY+ PPL+KVERG+ +YC
Sbjct: 495 QLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLIEQGFIYIACPPLFKVERGRNHEYC 554
Query: 417 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
Y D E + + FP+NA Y+IQRFKGLGEMMP QLW+TT+NPE R +KQ+ IEDAAEA+
Sbjct: 555 YSDREKNQAIAKFPANANYTIQRFKGLGEMMPQQLWDTTMNPETRKMKQVEIEDAAEADR 614
Query: 477 VFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+F+ LMG RV R+E I+ + +N LDI
Sbjct: 615 IFTILMGDRVAPRREFIETYGSKLNFTDLDI 645
>gi|428303880|ref|YP_007140705.1| DNA gyrase subunit B [Crinalium epipsammum PCC 9333]
gi|428245415|gb|AFZ11195.1| DNA gyrase subunit B [Crinalium epipsammum PCC 9333]
Length = 646
Score = 616 bits (1588), Expect = e-173, Method: Compositional matrix adjust.
Identities = 304/511 (59%), Positives = 394/511 (77%), Gaps = 8/511 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E++Q++ RG P+ L P+ ++R GT I F PD ++FT +I+FD+ TI+GR+RELA
Sbjct: 139 EHNQRFERGIPIGELKAQ--PI-KENRTGTSICFKPDTEIFTVSIEFDYTTISGRLRELA 195
Query: 62 FLNPKLTIALRKEDSDPEKN---QYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVD 117
+LN + I + KN + Y + GG+ EY+ ++NT+K+PLH+ V+ + + +
Sbjct: 196 YLNAGVKITFSDQRIHLLKNNEPKVETYCYEGGIREYITYMNTEKQPLHEEVIYIQGERN 255
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
+ +++ALQWC DAYSD +LG+AN+IRTIDGGTH+EG+KA LTRT+N+ +K +K+ D
Sbjct: 256 NVQVEVALQWCVDAYSDNLLGFANNIRTIDGGTHLEGLKAVLTRTMNTTARKRNKLKEAD 315
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L GE++REGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E TEYL+ HP+V
Sbjct: 316 SNLGGENIREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEIFTEYLDFHPNV 375
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
D+IL K++ A AA AA+RAR+LVR+KSVL SS LPGKLADCS+ P ESEI+IVEGDS
Sbjct: 376 ADAILEKAIQAFNAAEAARRARELVRRKSVLESSPLPGKLADCSTKDPTESEIYIVEGDS 435
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLGVKGE+F
Sbjct: 436 AGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGVKGEEFDSTQ 495
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+I+I+TDADVDGAHIRTLLLTFFYRYQ+ L DEG IY+ PPLYKVERG+ YCY
Sbjct: 496 LRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRALVDEGYIYIACPPLYKVERGRNHYYCY 555
Query: 418 DDAELKKVKSS-FPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
+ EL K+ ++ FPSNA Y+IQRFKGLGEMMP QLW+TT+NPE R LK++ IEDAAEA+
Sbjct: 556 SERELTKLTTTEFPSNANYTIQRFKGLGEMMPTQLWDTTMNPESRTLKRVEIEDAAEADR 615
Query: 477 VFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+F+ LMG RV R+E I+ + +NL LDI
Sbjct: 616 IFTVLMGDRVAPRREFIETYGSRLNLVDLDI 646
>gi|56751624|ref|YP_172325.1| DNA gyrase subunit B [Synechococcus elongatus PCC 6301]
gi|81301300|ref|YP_401508.1| DNA gyrase subunit B [Synechococcus elongatus PCC 7942]
gi|25019687|gb|AAN71773.1| DNA gyrase subunit B [Synechococcus elongatus PCC 7942]
gi|56686583|dbj|BAD79805.1| DNA gyrase B subunit [Synechococcus elongatus PCC 6301]
gi|81170181|gb|ABB58521.1| DNA gyrase subunit B [Synechococcus elongatus PCC 7942]
Length = 645
Score = 616 bits (1588), Expect = e-173, Method: Compositional matrix adjust.
Identities = 302/509 (59%), Positives = 391/509 (76%), Gaps = 7/509 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ +G P+ L V P D+ DR+GT++RF PD +F+ +FD+ T+A R++ELA+
Sbjct: 140 HQQRFEQGNPIGEL--QVAP-DADDRRGTQVRFKPDATIFSETTEFDYGTLASRLKELAY 196
Query: 63 LNPKLTIALRKEDSDPEKNQ---YNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDG 118
LN + I E KN Y+F GG+ EYV ++NTDK+ LH +++ + + DG
Sbjct: 197 LNAGVRIDFTDERLQLTKNHEPHQETYYFEGGIREYVAYMNTDKQALHSEIIFVQSEKDG 256
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ ++ ALQWC DAYSD +LG+AN+IRTIDGGTHIEG+K LTRT+N++ +K KD D
Sbjct: 257 VQVEAALQWCVDAYSDNILGFANNIRTIDGGTHIEGLKTVLTRTMNTIARKRNKRKDADN 316
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSGE++REGLT I+SV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYLE HP V
Sbjct: 317 NLSGENIREGLTAIVSVKVPDPEFEGQTKTKLGNTEVRGIVDTLVGETLTEYLEFHPSVA 376
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
D IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEIFIVEGDSA
Sbjct: 377 DLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPGESEIFIVEGDSA 436
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGE+F L
Sbjct: 437 GGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDASQL 496
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+I+I+TDADVDGAHIRTLLLTFFYRYQ++L ++G IY+ PPLYK+ERG+ YCY+
Sbjct: 497 RYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLLEQGYIYIACPPLYKLERGRNHYYCYN 556
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+ EL++ ++FP NA Y+IQRFKGLGEMMP QLWETT++PE R +K++ IEDAAEA+ +F
Sbjct: 557 ERELQERIATFPENANYTIQRFKGLGEMMPQQLWETTMDPETRTMKRVEIEDAAEADRIF 616
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ LMG RV R+E I+ +++ LDI
Sbjct: 617 TILMGDRVQPRREFIETYGPQLSMAALDI 645
>gi|119512311|ref|ZP_01631397.1| DNA topoisomerase IV subunit B [Nodularia spumigena CCY9414]
gi|119463024|gb|EAW43975.1| DNA topoisomerase IV subunit B [Nodularia spumigena CCY9414]
Length = 645
Score = 615 bits (1587), Expect = e-173, Method: Compositional matrix adjust.
Identities = 300/507 (59%), Positives = 389/507 (76%), Gaps = 7/507 (1%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
Q+Y RG PVT L D + + GT I F PD Q+F +++FD+ TIAGR+RELA+LN
Sbjct: 142 QRYERGVPVTELQAKP---DKEGKTGTSINFKPDSQIFINSVEFDYITIAGRLRELAYLN 198
Query: 65 PKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
+ I R E + + Y + GG++EY+ ++N DK+PLH+ ++ + + +
Sbjct: 199 AGVKIIFGDHRLELLKSDTPRIETYEYKGGIKEYIAYMNRDKQPLHEEIIYVHGERNNVQ 258
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
++++LQWC+DAY+D +LG+AN+IRTIDGGTH+EG+KA LTRTLN++ +K +K+ + +L
Sbjct: 259 VEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTRTLNAIARKRNKIKENESNL 318
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGEHVREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E L+EYLE HP + DS
Sbjct: 319 SGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLSEYLEFHPGIADS 378
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
IL K++ A KAA AA+ AR+LVR+KSVL SS LPGKLADCSS P ESEIFIVEGDSAGG
Sbjct: 379 ILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSSRDPSESEIFIVEGDSAGG 438
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDRR QAILPLRGKILN+E+ D+A +YKN E+Q+LI ALGLGVKG++F LRY
Sbjct: 439 SAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEVQSLITALGLGVKGDEFDSTQLRY 498
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
H+I+I+TDADVDGAHIRTLLLTFFYRYQ+ L ++G IY+ PPL+KVERGK +YCY +
Sbjct: 499 HRIVIMTDADVDGAHIRTLLLTFFYRYQRALIEQGFIYIACPPLFKVERGKNHEYCYSER 558
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL++ + PSNA Y+IQRFKGLGEMMP QLW+TT+NPE R +KQ+ IEDAAEA+ +F+
Sbjct: 559 ELQQYLGTLPSNANYNIQRFKGLGEMMPQQLWDTTMNPESRKMKQVEIEDAAEADRIFTI 618
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMG RV R+E I+ + +N LDI
Sbjct: 619 LMGDRVAPRREFIETYGSKLNFTDLDI 645
>gi|443321835|ref|ZP_21050875.1| DNA gyrase, B subunit [Gloeocapsa sp. PCC 73106]
gi|442788451|gb|ELR98144.1| DNA gyrase, B subunit [Gloeocapsa sp. PCC 73106]
Length = 640
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 296/506 (58%), Positives = 391/506 (77%), Gaps = 6/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG PVT L P +++QGT + F PD ++F+ +FD+NT+AGR++ELA+
Sbjct: 140 HTQRYERGIPVTELISEPHP---ENQQGTSVSFLPDAEIFSETREFDYNTLAGRLKELAY 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I PE+ + Y + GG+ EYV ++ +K+PLH D++ + + + +
Sbjct: 197 LNAGVKITFSDRRQTPERVE--AYCYEGGIREYVTYMTREKEPLHKDIIYVSGERNDVQV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQWC DAYSD +LG+AN+IRTIDGGTH+EG+K LTRT+N++ +K +K+ + +L+
Sbjct: 255 EVALQWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTINTVARKRNKIKENEANLA 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE+VREGLT ++SV+VP+PEFEGQTKT+LGN EVR +VD V E L+EYLE +P V DS+
Sbjct: 315 GENVREGLTGVVSVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLSEYLEFNPHVADSV 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ A KAA AA+ AR+LVR+KSVL SS LPGKLADCS+ P ESEIF+VEGDSAGGS
Sbjct: 375 IDKAIQAFKAAEAARNARELVRRKSVLESSPLPGKLADCSTRDPAESEIFLVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILN+E+ D++ +YKN EIQ+LI ALGLG+KGE+F ALRYH
Sbjct: 435 AKQGRDRRFQAILPLRGKILNIEKTDDSKIYKNNEIQSLITALGLGIKGEEFDASALRYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+I+I+TDADVDGAHIRTLLLTFFYRYQ+ L D+G IY+ PPLYK+ERG+ YCY D E
Sbjct: 495 RIVIMTDADVDGAHIRTLLLTFFYRYQRDLVDQGYIYIACPPLYKIERGRNHYYCYSDRE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ ++FP NA Y+IQRFKGLGEMMP QLWETT+NPE R LK++ IEDAAEA+ +F+ L
Sbjct: 555 LQQQLATFPPNASYNIQRFKGLGEMMPAQLWETTMNPESRTLKRIEIEDAAEADRIFTVL 614
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RV R+E I+ + +NL LDI
Sbjct: 615 MGDRVAPRREFIETHGSRLNLVDLDI 640
>gi|22298189|ref|NP_681436.1| DNA gyrase subunit B [Thermosynechococcus elongatus BP-1]
gi|22294368|dbj|BAC08198.1| DNA gyrase subunit B [Thermosynechococcus elongatus BP-1]
Length = 640
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 302/506 (59%), Positives = 396/506 (78%), Gaps = 6/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+HQ+Y RG P T L P D+++R+GT + F+PD+Q+FT I+FD + R+RELA+
Sbjct: 140 HHQRYERGVPTTPL--EKTP-DTEERRGTSVTFFPDRQIFTETIEFDAKVLMTRLRELAY 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I + P ++ Y + GG+ EYV+++ +K+PLH +++ + + D + +
Sbjct: 197 LNAGIRIEFKDLRVTPPLSE--TYCYEGGIREYVRYMVQEKEPLHPEIIYIQGEKDDVQV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+ ALQWC+DAYS+ +LG+AN+IRTIDGGTH+EG+KA LTRTLN+LG+K +K+ + +L+
Sbjct: 255 EAALQWCADAYSENLLGFANNIRTIDGGTHMEGLKAVLTRTLNALGRKRNKLKENNANLA 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE++REGLT IISV+VPNPEFEGQTKT+LGN EVR +VD V LTEYL+ HP+V D+I
Sbjct: 315 GENIREGLTAIISVKVPNPEFEGQTKTKLGNTEVRGIVDAIVGAALTEYLDFHPNVTDTI 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K++ A AA AA+RAR++VR+KSVL SS+LPGKLADCSS P SEIFIVEGDSAGGS
Sbjct: 375 LEKAIQAFNAAEAARRAREMVRRKSVLESSTLPGKLADCSSRDPAVSEIFIVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILN+E+ D+A +YKN E+Q+LI ALGLGVKGE+F LRYH
Sbjct: 435 AKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEVQSLITALGLGVKGEEFDPAKLRYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KII++TDADVDG+HIRTLLLTFFYRYQ+ L ++G +Y+ PPLYKVERG+Q YCY D E
Sbjct: 495 KIILMTDADVDGSHIRTLLLTFFYRYQQELVNQGFVYIACPPLYKVERGRQHFYCYSDRE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ +SFP NA Y+IQRFKGLGEMMP QLWETT+NPE R+LK++ IEDAAEA+ +F+ L
Sbjct: 555 LQQQIASFPENANYTIQRFKGLGEMMPEQLWETTMNPETRILKRVEIEDAAEADRIFTIL 614
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RV R+E I+ + L++LDI
Sbjct: 615 MGDRVAPRREFIETYGPQLALENLDI 640
>gi|75908731|ref|YP_323027.1| DNA gyrase subunit B [Anabaena variabilis ATCC 29413]
gi|75702456|gb|ABA22132.1| DNA gyrase subunit B [Anabaena variabilis ATCC 29413]
Length = 645
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 299/507 (58%), Positives = 389/507 (76%), Gaps = 7/507 (1%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
Q+Y RG PVT L + R GT + F PD Q+FT +I+FD+ T++ R+RELA+LN
Sbjct: 142 QRYERGIPVTELIAKPY---KEARTGTSVSFKPDSQIFTNSIEFDYITLSSRLRELAYLN 198
Query: 65 PKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
+ I R E + + Y + GG++EY+ ++N DK+PLH+ ++ + + + +
Sbjct: 199 AGVKITFTDNRLELLKSDTPKVESYEYKGGIKEYIAYMNRDKQPLHEEIIYVQGERNNVQ 258
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
I+++LQWC+DAY+D +LG+AN+IRTIDGGTH+EG+KA LTRTLN++ +K +K+ + +L
Sbjct: 259 IEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTRTLNTIARKRNKIKENEANL 318
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGEHVREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYLE HP + D+
Sbjct: 319 SGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFHPGIADA 378
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
IL K++ A KAA AA+ AR+LVR+KSVL SS LPGKLADCSS P ESEI+IVEGDSAGG
Sbjct: 379 ILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSSRDPSESEIYIVEGDSAGG 438
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDRR QAILPLRGKILN+E+ D++ +YKN EIQ LI ALGLGVKGE+F LRY
Sbjct: 439 SAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEIQALITALGLGVKGEEFDSTQLRY 498
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
H+III+TDADVDGAHIRTL+LTFFYRYQ+ L ++G IY+ PPLYKVERG+ +YCY +
Sbjct: 499 HRIIIMTDADVDGAHIRTLILTFFYRYQRALIEQGFIYIACPPLYKVERGRNYEYCYSER 558
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+L++ + FP+NA Y+IQRFKGLGEMMP QLW TT+NPE R LK++ IEDAAEA+ +F+
Sbjct: 559 DLQQAIAKFPANANYTIQRFKGLGEMMPEQLWTTTMNPETRTLKRVEIEDAAEADRIFTI 618
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMG RV R+E I+ + +NL LDI
Sbjct: 619 LMGDRVAPRREFIETYGSKLNLTDLDI 645
>gi|166367564|ref|YP_001659837.1| DNA gyrase subunit B [Microcystis aeruginosa NIES-843]
gi|422301910|ref|ZP_16389275.1| DNA gyrase subunit B, chloroplastic/mitochondrial [Microcystis
aeruginosa PCC 9806]
gi|425463513|ref|ZP_18842843.1| DNA gyrase subunit B, chloroplastic/mitochondrial [Microcystis
aeruginosa PCC 9809]
gi|166089937|dbj|BAG04645.1| DNA gyrase subunit B [Microcystis aeruginosa NIES-843]
gi|389788978|emb|CCI15027.1| DNA gyrase subunit B, chloroplastic/mitochondrial [Microcystis
aeruginosa PCC 9806]
gi|389831668|emb|CCI25386.1| DNA gyrase subunit B, chloroplastic/mitochondrial [Microcystis
aeruginosa PCC 9809]
Length = 640
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 303/506 (59%), Positives = 389/506 (76%), Gaps = 6/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG PVT L V +++ GTR+ F PD ++F+ I+FD++T++GR+RELA+
Sbjct: 140 HTQRYERGIPVTEL---VSSPSQEEKTGTRVNFLPDTEIFSQGIEFDYSTLSGRLRELAY 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I D PE+ Y + GG++EYV ++ +K+ LH D++ + +GI I
Sbjct: 197 LNAGVKITF--SDYRPEEPHIETYCYEGGIKEYVAYMCREKETLHKDIIYVSGEKNGINI 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A QWC DAYSD +LG+AN+IRTIDGGTH+EG+KA LTRTLN++ +K +K+ + +L+
Sbjct: 255 EVAFQWCIDAYSDNILGFANNIRTIDGGTHLEGLKAVLTRTLNNVARKRNKIKENEPNLA 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE+VREGLT +ISV+VP PEFEGQTKT+LGN EVR +VD V E L EYLE +P V D+I
Sbjct: 315 GENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGETLNEYLEQNPQVADTI 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ A KAA AA+RARDLVR+KSVL SS LPGKLADCS PE SEI+IVEGDSAGGS
Sbjct: 375 IEKAVQAYKAAEAARRARDLVRRKSVLESSPLPGKLADCSERDPERSEIYIVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGEDF LRYH
Sbjct: 435 AKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLGIKGEDFDPSQLRYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+I+++TDADVDGAHIRTLLLTFFYRYQK L D+G +Y+ PPLYK+ERGK YCY D E
Sbjct: 495 RIVLMTDADVDGAHIRTLLLTFFYRYQKNLIDQGYVYIACPPLYKLERGKNHSYCYSDRE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ + FPSNA Y+IQRFKGLGEMMP QLW+TT+NPE R LK++ IEDAA+A +F+ L
Sbjct: 555 LQQKIAEFPSNANYTIQRFKGLGEMMPQQLWDTTMNPETRTLKRVEIEDAAKAEELFTIL 614
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RV R+E I+ + +NL LDI
Sbjct: 615 MGDRVAPRREFIETHGSRLNLTDLDI 640
>gi|390438149|ref|ZP_10226642.1| DNA gyrase subunit B, chloroplastic/mitochondrial [Microcystis sp.
T1-4]
gi|389838422|emb|CCI30766.1| DNA gyrase subunit B, chloroplastic/mitochondrial [Microcystis sp.
T1-4]
Length = 640
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 303/506 (59%), Positives = 390/506 (77%), Gaps = 6/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG PVT L V +++ GTR+ F PD ++F+ I+FD++T++GR+RELA+
Sbjct: 140 HTQRYERGIPVTEL---VSSPSQEEKTGTRVNFLPDTEIFSQGIEFDYSTLSGRLRELAY 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I D PE+ Y + GG++EYV ++ +K+ LH D++ + +GI I
Sbjct: 197 LNAGVKITF--SDYRPEEPHIETYCYEGGIKEYVAYMCREKETLHKDIIYVSGEKNGINI 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A QWC DAYSD +LG+AN+IRTIDGGTH+EG+KA LTRTLN++ +K +K+ + +L+
Sbjct: 255 EVAFQWCIDAYSDNILGFANNIRTIDGGTHLEGLKAVLTRTLNNVARKRNKIKENEPNLA 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE+VREGLT +ISV+VP PEFEGQTKT+LGN EVR +VD V E L EYLE +P V D+I
Sbjct: 315 GENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGETLNEYLEQNPQVADTI 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ A KAA AA+RARDLVR+KSVL SS LPGKLADCS PE+SEI+IVEGDSAGGS
Sbjct: 375 IEKAVQAYKAAEAARRARDLVRRKSVLESSPLPGKLADCSERDPEKSEIYIVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGEDF LRYH
Sbjct: 435 AKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLGIKGEDFDPSQLRYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+I+++TDADVDGAHIRTLLLTFFYRYQK L D+G +Y+ PPLYK+ERGK YCY D E
Sbjct: 495 RIVLMTDADVDGAHIRTLLLTFFYRYQKNLIDQGYVYIACPPLYKLERGKNHSYCYSDRE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ + FPSNA Y+IQRFKGLGEMMP QLW+TT+NPE R LK++ IEDAA+A +F+ L
Sbjct: 555 LQQKIAEFPSNANYTIQRFKGLGEMMPQQLWDTTMNPETRTLKRVEIEDAAKAEELFTIL 614
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RV R+E I+ + +NL LDI
Sbjct: 615 MGDRVAPRREFIETHGSRLNLTDLDI 640
>gi|170077957|ref|YP_001734595.1| DNA gyrase subunit B [Synechococcus sp. PCC 7002]
gi|169885626|gb|ACA99339.1| DNA gyrase, B subunit [Synechococcus sp. PCC 7002]
Length = 640
Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust.
Identities = 300/506 (59%), Positives = 388/506 (76%), Gaps = 6/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG P LT P + GT + F PD ++FT FD+NT+AGR+RELA+
Sbjct: 140 YKQRYERGVPQGELTEAPAP---QHLSGTSVCFLPDAKIFTETTVFDYNTLAGRLRELAY 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I D EK N YF+ GG++EYV ++N +K PLH+ ++ + +G+ +
Sbjct: 197 LNAGVRIVF--TDHRSEKQASNTYFYEGGIKEYVAYMNREKSPLHEEIIYVTGEKNGVQL 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQWC+DAYSD +LG+AN+IRT+DGGTH+EG+K+ LTRT+N++ +K +KD D +L+
Sbjct: 255 EVALQWCTDAYSDNLLGFANNIRTVDGGTHLEGLKSVLTRTMNTVARKRNKLKDNDSNLA 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE++REGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEY E + +V+D+I
Sbjct: 315 GENIREGLTAVISVKVPDPEFEGQTKTKLGNSEVRGIVDSFVGEVLTEYFEFNLNVVDAI 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K++ A KAA AA+RAR+LVR+KSVL SS LPGKLADCS P ++EI++VEGDSAGGS
Sbjct: 375 LEKAIQAFKAAEAARRARELVRRKSVLESSLLPGKLADCSERDPAKTEIYLVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGE+F E LRYH
Sbjct: 435 AKQGRDRAFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLGIKGEEFNPEKLRYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+++I+TDADVDGAHIRTLLLTFFYRYQ+ L D+G IY+ PPLYK+ERGK YCY D E
Sbjct: 495 RVVIMTDADVDGAHIRTLLLTFFYRYQRELVDQGYIYIACPPLYKLERGKNHAYCYSDRE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ S P NA Y+IQRFKGLGEMMP QLW+TT+NPE R LK++ IEDAAEA+ +F+ L
Sbjct: 555 LQDQISQLPDNAKYNIQRFKGLGEMMPQQLWDTTMNPESRTLKRVEIEDAAEADRIFTVL 614
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RV R+E I+ A +N+D LDI
Sbjct: 615 MGDRVAPRREFIEMNAPKLNMDDLDI 640
>gi|172035674|ref|YP_001802175.1| DNA gyrase subunit B [Cyanothece sp. ATCC 51142]
gi|354554914|ref|ZP_08974217.1| DNA gyrase, B subunit [Cyanothece sp. ATCC 51472]
gi|171697128|gb|ACB50109.1| DNA gyrase B subunit [Cyanothece sp. ATCC 51142]
gi|353553068|gb|EHC22461.1| DNA gyrase, B subunit [Cyanothece sp. ATCC 51472]
Length = 642
Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust.
Identities = 302/506 (59%), Positives = 388/506 (76%), Gaps = 6/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG P+T L D GT I F PDK++FT I+FD++T+AGR+RELA+
Sbjct: 142 HTQRYERGIPITNLETKP---DKNHSTGTSISFLPDKKIFTVGIEFDYSTLAGRLRELAY 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I D+ E+ Y + GG++EYV ++ DK PLH D++ + +G +
Sbjct: 199 LNAGVRITF--TDNRKEEPHVESYCYEGGIKEYVTYMCRDKDPLHQDIIFVSGEKNGTQV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++AL WC DAYSD +LG+AN+IRTIDGGTH+EG+K LTRT+N++ +K +KD D +L
Sbjct: 257 EVALLWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNNVARKRNKLKDNDANLG 316
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE+VREGLT +ISV+VP PEFEGQTKT+LGN EVR +VD V E LTEYLE +P V DSI
Sbjct: 317 GENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFNPHVADSI 376
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ A KAA AA+RAR+LVR+KSVL SS LPGKLADCS+ PEESEIF+VEGDSAGGS
Sbjct: 377 IEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSTRDPEESEIFLVEGDSAGGS 436
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKI+N+E+ D+A +YKN EIQ+LI ALGLG+KGE+F LRYH
Sbjct: 437 AKQGRDRRFQAILPLRGKIINIEKTDDARIYKNNEIQSLITALGLGIKGEEFDPAQLRYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+I+I+TDADVDGAHIRTLLLTFFYRYQ+ L D+G +Y+ PPLYKVERG+ YCY++ +
Sbjct: 497 RIVIMTDADVDGAHIRTLLLTFFYRYQRALVDQGYVYIACPPLYKVERGRNHVYCYNERQ 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ +S P+NA YSIQRFKGLGEMMP QLW+TT+NPE R +KQ+ IEDAAEA+ +F+ L
Sbjct: 557 LQEHINSLPANANYSIQRFKGLGEMMPTQLWDTTMNPETRRMKQVEIEDAAEADRIFTIL 616
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RV R+E I+ ++L+ LDI
Sbjct: 617 MGDRVAPRREFIETYGPKLDLNDLDI 642
>gi|428771456|ref|YP_007163246.1| DNA gyrase subunit B [Cyanobacterium aponinum PCC 10605]
gi|428685735|gb|AFZ55202.1| DNA gyrase subunit B [Cyanobacterium aponinum PCC 10605]
Length = 649
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 300/506 (59%), Positives = 387/506 (76%), Gaps = 5/506 (0%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RGKP+T L D+ GT + F PD Q+FT +FD+N ++ R+RELA+
Sbjct: 148 HTQRYERGKPITDLETK--DNDTGHSTGTSVSFLPDNQIFTETTEFDYNLLSNRLRELAY 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I + PE+ + Y + GG++EYV ++ +K+ LH D++ + +G+ +
Sbjct: 206 LNAGVKITFTDKRVTPEREE--TYCYEGGIKEYVTYMTREKEVLHQDIIYTSGEKNGVQV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQWC DAYSDT+LG+AN+IRTIDGGTH+EG+K LTRTLN++G+K +K+ D +L
Sbjct: 264 EVALQWCIDAYSDTILGFANNIRTIDGGTHLEGLKTVLTRTLNNIGRKRNKIKENDSNLG 323
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE+VREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E L EYLE +P V DSI
Sbjct: 324 GENVREGLTAVISVKVPDPEFEGQTKTKLGNSEVRGIVDSLVGEALNEYLEFNPHVADSI 383
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ A KAA AA+RAR+LVR+KSVL SS LPGKLADCSS P ESEIF+VEGDSAGGS
Sbjct: 384 IEKAIQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSSRDPAESEIFLVEGDSAGGS 443
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KG++F LRYH
Sbjct: 444 AKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLGIKGDEFDASQLRYH 503
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
I+I+TDADVDGAHIRTLLLTFFYRYQ+ L ++G IY+ PPLYK+ERGK YCY D E
Sbjct: 504 HIVIMTDADVDGAHIRTLLLTFFYRYQRELVEQGYIYIACPPLYKLERGKNHFYCYSDRE 563
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ + FP NA Y+IQRFKGLGEMMP QLW+TT+NPE RM+K++ IEDAAEA+ +F+ L
Sbjct: 564 LQQKIAEFPPNANYNIQRFKGLGEMMPEQLWDTTMNPETRMMKRVEIEDAAEADRIFTVL 623
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RV R+E I+ +NL LD+
Sbjct: 624 MGDRVAPRREFIETHGPRLNLTELDV 649
>gi|218246132|ref|YP_002371503.1| DNA gyrase subunit B [Cyanothece sp. PCC 8801]
gi|257059181|ref|YP_003137069.1| DNA gyrase subunit B [Cyanothece sp. PCC 8802]
gi|218166610|gb|ACK65347.1| DNA gyrase, B subunit [Cyanothece sp. PCC 8801]
gi|256589347|gb|ACV00234.1| DNA gyrase, B subunit [Cyanothece sp. PCC 8802]
Length = 641
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 300/506 (59%), Positives = 389/506 (76%), Gaps = 6/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG PVT+L + P S GT I F PD ++F+ I+FD+NT++GR+RELA+
Sbjct: 141 HTQRYERGNPVTSLAANPDPDHST---GTSISFLPDIEIFSGGIEFDYNTLSGRLRELAY 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I D+ P + Y + GG++EYV ++ DK LH D++ + +G+ I
Sbjct: 198 LNAGVKITFT--DNRPAEIHQETYCYEGGIKEYVAYMCRDKDALHQDIIYVSGEKNGVQI 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQWC DAYSD +LG+AN+IRTIDGGTH+EG+K LTRT+N++ +K +K+ + +L
Sbjct: 256 EVALQWCIDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTINNVARKRNKIKENEANLG 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE+VREGLT +ISV+VP PEFEGQTKT+LGN EVR +VD V E L EYLE +P V D+I
Sbjct: 316 GENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVLNEYLEFNPQVADNI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ A KAA AA+RAR+LVR+KSVL SS LPGKLADCS+ PEESEIF+VEGDSAGGS
Sbjct: 376 IEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSTRDPEESEIFLVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGE+F LRYH
Sbjct: 436 AKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLGIKGEEFDPSQLRYH 495
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+++I+TDADVDGAHIRTLLLTFFYRYQ+ L D+G +Y+ PPLYKVERG+ YCY++ E
Sbjct: 496 RVVIMTDADVDGAHIRTLLLTFFYRYQRELVDQGYVYIACPPLYKVERGRNHVYCYNERE 555
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ +S P+NA Y+IQRFKGLGEMMP QLWETT+NPE R +K++ IEDAAEA+ +F+ L
Sbjct: 556 LQEHLNSLPANANYTIQRFKGLGEMMPTQLWETTMNPETRTMKRVEIEDAAEADRIFTVL 615
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RV R+E I+ +NL LDI
Sbjct: 616 MGDRVAPRREFIETYGPKLNLTDLDI 641
>gi|67920055|ref|ZP_00513575.1| DNA gyrase, B subunit [Crocosphaera watsonii WH 8501]
gi|67857539|gb|EAM52778.1| DNA gyrase, B subunit [Crocosphaera watsonii WH 8501]
Length = 642
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 304/510 (59%), Positives = 392/510 (76%), Gaps = 14/510 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG P+ +L D K GT + F PD Q+F+ I+FD++T+AGR++ELA+
Sbjct: 142 HTQRYERGIPLGSLDTKP---DKKHSTGTSVSFLPDIQIFSGGIEFDYSTLAGRLKELAY 198
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I RKE+ YNE Y + GG++EYV ++ DK PLH D++ + +
Sbjct: 199 LNAGVKITFTDHRKEEP------YNETYCYEGGIKEYVTYMCRDKDPLHQDIIYVSGEKN 252
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G +++AL WC DAYSD +LG+AN+IRTIDGGTH+EG+K LTRT+N++ +K +K+ D
Sbjct: 253 GTQVEVALLWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNNVARKRNKLKEND 312
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L GE+VREGLT +ISV+VP PEFEGQTKT+LGN EVR +VD V E LTEYLE +P V
Sbjct: 313 ANLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFNPQV 372
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
D+I+ K++ A KAA AA+RAR+LVR+KSVL SS LPGKLADCSS PEESEIF+VEGDS
Sbjct: 373 ADNIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSSRDPEESEIFLVEGDS 432
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKI+N+E+ D+A +YKN EIQ+LI ALGLG+KGE+F E
Sbjct: 433 AGGSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEIQSLITALGLGIKGEEFDSEQ 492
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+I+I+TDADVDGAHIRTLLLTFFYRYQ++L D+G +Y+ PPLYKVERG+ YCY
Sbjct: 493 LRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYVYIACPPLYKVERGRNHMYCY 552
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ +L++ +S P+NA Y+IQRFKGLGEMMP QLWETT+NPE R +KQ+ IEDAAEA+ +
Sbjct: 553 NERQLQEHINSLPNNANYTIQRFKGLGEMMPTQLWETTMNPETRSMKQVEIEDAAEADRI 612
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG RV R+E I+ +NL LDI
Sbjct: 613 FTILMGDRVAPRREFIETYGPKLNLTDLDI 642
>gi|434398522|ref|YP_007132526.1| DNA gyrase subunit B [Stanieria cyanosphaera PCC 7437]
gi|428269619|gb|AFZ35560.1| DNA gyrase subunit B [Stanieria cyanosphaera PCC 7437]
Length = 642
Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust.
Identities = 295/506 (58%), Positives = 389/506 (76%), Gaps = 4/506 (0%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG P L + R GT + F+PD ++FT I F++N +AGR+RELA+
Sbjct: 140 HTQRYERGIPSGDLVVQA-NIQEPQRTGTAVHFFPDTKIFTETIHFEYNVLAGRLRELAY 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I D E+ + YF+ GG++EYV ++ +K+PLH D++ + + +G+ I
Sbjct: 199 LNAGVKITF--TDHRIEETRQEIYFYEGGIKEYVTYMTREKEPLHQDIIYVQGEKNGVNI 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQWC DA++D +LG+AN+IRTIDGGTH+EG+K LTRT+N++ +K +K+ + +L
Sbjct: 257 EVALQWCVDAFNDNLLGFANNIRTIDGGTHLEGLKTVLTRTINNIARKRNKIKENESNLG 316
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE+VREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E L EYLE +P V DS+
Sbjct: 317 GENVREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLNEYLEFNPQVADSV 376
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ A KAA AA+RAR+LVR+KSVL SS LPGKLADCSS P ESEIF+VEGDSAGGS
Sbjct: 377 IEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSSRDPGESEIFLVEGDSAGGS 436
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGE+F LRYH
Sbjct: 437 AKQGRDRQFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLGIKGEEFDSSQLRYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+++I+TDADVDGAHIRTLLLTFFYRYQ+ L D+G +Y+ PPLYKVERG+ YCY D E
Sbjct: 497 RVVIMTDADVDGAHIRTLLLTFFYRYQRELVDQGYVYIACPPLYKVERGRNHYYCYSDRE 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ FP+NA Y+IQRFKGLGEMMP QLWETT+NPE R LK++ IEDAAEA+ +F+ L
Sbjct: 557 LQQLTREFPANANYTIQRFKGLGEMMPEQLWETTMNPETRTLKRVEIEDAAEADRIFTVL 616
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RV R+E I+ + ++L+ LDI
Sbjct: 617 MGDRVAPRREFIETHGSRLDLNELDI 642
>gi|220908378|ref|YP_002483689.1| DNA gyrase subunit B [Cyanothece sp. PCC 7425]
gi|219864989|gb|ACL45328.1| DNA gyrase, B subunit [Cyanothece sp. PCC 7425]
Length = 645
Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust.
Identities = 302/509 (59%), Positives = 385/509 (75%), Gaps = 7/509 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG P T L +R GT I+F PD ++FT I+FD+ T++GR+RELA+
Sbjct: 140 FTQRFERGLPATDLKAQP---SGGNRTGTAIQFMPDAEIFTETIEFDYKTLSGRLRELAY 196
Query: 63 LNPKLTIALRKEDSDPEKNQ---YNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDG 118
LN + I R D K YF+ GG++EYV ++N DK+PLH +++ + + +
Sbjct: 197 LNAGVKIEFRDGRLDLLKRDEPLLETYFYEGGIKEYVSYMNVDKEPLHQEIIYVQGERND 256
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ +++ALQWC+DAY+D +LG+AN+IRTIDGGTH+EG+KA LTRTLN+ +K +K+ D
Sbjct: 257 VQVEVALQWCTDAYTDNLLGFANNIRTIDGGTHLEGLKAVLTRTLNNFARKRNKLKEGDP 316
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE+VREG+T +ISV+VP PEFEGQTKT+LGN EVR +VD V E LTEYL+ P V+
Sbjct: 317 NLAGENVREGMTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLDFRPAVV 376
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
DSIL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P E+EIFIVEGDSA
Sbjct: 377 DSILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPREAEIFIVEGDSA 436
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGE+F L
Sbjct: 437 GGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLGIKGEEFDASNL 496
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHKII +TDADVDGAHIRTLLLTFFYRYQ+ L D+G IYV PPLYK+ERG+ YCY+
Sbjct: 497 RYHKIIAMTDADVDGAHIRTLLLTFFYRYQRQLVDQGYIYVACPPLYKIERGRNHYYCYN 556
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D E ++ + NA Y IQRFKGLGEMMP QLW+TT+NPE R LKQ+ IEDAAEA+ +F
Sbjct: 557 DRERDQIIAGLGENARYEIQRFKGLGEMMPQQLWDTTMNPETRTLKQVTIEDAAEADRIF 616
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ LMG RV R+E I+ +NL LDI
Sbjct: 617 NILMGDRVAPRREFIETYGPRLNLADLDI 645
>gi|126660369|ref|ZP_01731481.1| DNA topoisomerase IV subunit B [Cyanothece sp. CCY0110]
gi|126618342|gb|EAZ89099.1| DNA topoisomerase IV subunit B [Cyanothece sp. CCY0110]
Length = 642
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 300/506 (59%), Positives = 388/506 (76%), Gaps = 6/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG P+T+L D GT I F PDK +FT +FD++T+AGR+RELA+
Sbjct: 142 HTQRYERGVPITSLETKA---DKDHSTGTSISFLPDKTIFTVGTEFDYSTLAGRLRELAY 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I D+ E+ Y + GG++EYV ++ DK PLH D++ + +G +
Sbjct: 199 LNAGVKITF--TDNRKEEPHIESYCYEGGIKEYVTYMCRDKDPLHQDIIFVSGEKNGTQV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++AL WC DAYSD +LG+AN+IRTIDGGTH+EG+K LTRT+N++ +K +KD D +L
Sbjct: 257 EVALLWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNNVARKRNKLKDNDSNLG 316
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE+VREGLT +ISV+VP PEFEGQTKT+LGN EVR +VD V E L+EYLE +P V DSI
Sbjct: 317 GENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVLSEYLEFNPHVADSI 376
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ A KAA AA+RAR+LVR+KSVL SS LPGKLADCS+ PEESEIF+VEGDSAGGS
Sbjct: 377 IEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSTRDPEESEIFLVEGDSAGGS 436
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKI+N+E+ D+A +YKN EIQ+LI ALGLG+KGE+F LRYH
Sbjct: 437 AKQGRDRRFQAILPLRGKIINIEKTDDARIYKNNEIQSLITALGLGIKGEEFDSSQLRYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+I+I+TDADVDGAHIRTLLLTFFYRYQ++L D+G +Y+ PPLYKVERG+ YCY++ +
Sbjct: 497 RIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYVYIACPPLYKVERGRNHVYCYNERQ 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ +S P+NA YSIQRFKGLGEMMP QLW+TT+NPE R +KQ+ IEDAAEA+ +F+ L
Sbjct: 557 LQEHINSLPANANYSIQRFKGLGEMMPTQLWDTTMNPETRRMKQVEIEDAAEADRIFTIL 616
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RV R+E I+ ++L+ LDI
Sbjct: 617 MGDRVAPRREFIETYGPKLDLNDLDI 642
>gi|434394941|ref|YP_007129888.1| DNA gyrase subunit B [Gloeocapsa sp. PCC 7428]
gi|428266782|gb|AFZ32728.1| DNA gyrase subunit B [Gloeocapsa sp. PCC 7428]
Length = 646
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 307/511 (60%), Positives = 393/511 (76%), Gaps = 14/511 (2%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
Q++ RG PVT L V P + + GT + F PD +FTT +FD+ T+AGR+RELA+LN
Sbjct: 142 QRFERGIPVTEL--QVKP-SKEAKTGTSVTFQPDATIFTTGTEFDYITLAGRLRELAYLN 198
Query: 65 P--KLTIALRK----EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVD 117
K+T + R+ + S+P+ Y + GG++EYV ++N +K+PLH+ + F + + +
Sbjct: 199 AGVKITFSDRRLELLKSSEPKVETYE---YKGGIKEYVAYMNREKQPLHEEIIFVQGERN 255
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
+ +++ALQW DAY+D +LG+AN+IRT+DGGTH+EG+KA LTRTLN++ +K +KD +
Sbjct: 256 NVQVEVALQWSVDAYTDNILGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKDNE 315
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+LSGEHVREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYL+ HP+V
Sbjct: 316 PNLSGEHVREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLDFHPNV 375
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
DS+L K++ A KAA AA+ AR+LVR+KSVL SS LPGKLADCSS ESEIFIVEGDS
Sbjct: 376 ADSVLDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSSRDASESEIFIVEGDS 435
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLGVKGE+F
Sbjct: 436 AGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGVKGEEFDASQ 495
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+I+I+TDADVDGAHIRTLLLTFFYRYQ+ L D+G IY+ PPL+KVERG+ YCY
Sbjct: 496 LRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRELIDQGYIYIACPPLFKVERGRSHYYCY 555
Query: 418 DDAELKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
D EL+ ++ FP NA Y+IQRFKGLGEMMP QLWETT+NPE R +KQ+ IEDAAEA+
Sbjct: 556 SDRELQNLIQHEFPDNANYTIQRFKGLGEMMPDQLWETTMNPETRTMKQVEIEDAAEADR 615
Query: 477 VFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+F+ LMG RV R+E I+ + +NL LDI
Sbjct: 616 IFTILMGDRVAPRREFIETYGSRLNLTELDI 646
>gi|428315585|ref|YP_007113467.1| DNA gyrase subunit B [Oscillatoria nigro-viridis PCC 7112]
gi|428239265|gb|AFZ05051.1| DNA gyrase subunit B [Oscillatoria nigro-viridis PCC 7112]
Length = 646
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 305/514 (59%), Positives = 391/514 (76%), Gaps = 14/514 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E+ Q+Y RG PVT L V P + R GT + F PD Q+FTT I+FD+ T+AGR+REL
Sbjct: 139 EHLQRYERGNPVTEL--KVKP-NKGTRTGTSVSFLPDTQIFTTGIEFDYTTLAGRLRELG 195
Query: 62 FLNPKLTIALRK------EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRK 114
+LN + I + S+P Y + GG++EY+ ++N +K+PLHD V+ +
Sbjct: 196 YLNAGVRITFSDHRLALLKSSEP---HIETYCYEGGIKEYIAYMNREKQPLHDEVIYVQG 252
Query: 115 DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK 174
+ + + I++ALQWC DA+SD +LG+AN+IRTIDGGTH+EG+KA LTRT+NS+ +K +K
Sbjct: 253 ERNNVQIEVALQWCVDAFSDNVLGFANNIRTIDGGTHLEGLKAVLTRTMNSIARKRNKIK 312
Query: 175 DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELH 234
+ + +L+GE+VREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYLE
Sbjct: 313 ENEPNLAGENVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFR 372
Query: 235 PDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVE 294
P V D+IL K++ A KAA AA+RARDLVR+KSVL SS LPGKLADCSS P SEI++VE
Sbjct: 373 PQVADAILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCSSRDPALSEIYLVE 432
Query: 295 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 354
GDSAGGSAKQGRDR+FQAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGE+F
Sbjct: 433 GDSAGGSAKQGRDRQFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLGIKGEEFD 492
Query: 355 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
LRYH I+I+TDADVDGAHIRTLLLTFFYRYQ+ L ++G IY+ PPLYKVERG+
Sbjct: 493 PAQLRYHHIVIMTDADVDGAHIRTLLLTFFYRYQRALVEQGYIYIACPPLYKVERGRNHY 552
Query: 415 YCYDDAELKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
YCY D E+ V++ FP+NA Y++QRFKGLGEMMP QLW+TT+NPE R LK++ IEDAAE
Sbjct: 553 YCYSDREMNNLVRNEFPANANYTVQRFKGLGEMMPTQLWDTTMNPETRTLKRVEIEDAAE 612
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
A+ +F+ LMG RV R+E I+ +NL LDI
Sbjct: 613 ADRIFTILMGDRVAPRREFIETYGPKLNLLDLDI 646
>gi|298491608|ref|YP_003721785.1| DNA gyrase subunit B ['Nostoc azollae' 0708]
gi|298233526|gb|ADI64662.1| DNA gyrase, B subunit ['Nostoc azollae' 0708]
Length = 645
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 302/510 (59%), Positives = 393/510 (77%), Gaps = 7/510 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E+ Q+Y R PVT L V P + R GT I F PD Q+FT +I+FD+ T++GR+RELA
Sbjct: 139 EHLQRYERSFPVTEL--QVKPY-KEPRTGTSITFKPDTQIFTISIEFDYITLSGRLRELA 195
Query: 62 FLNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVD 117
+LN + I R E + + Y + GG++EYV ++N +K+PLH+ ++ + + +
Sbjct: 196 YLNAGVKIIFTDHRLELLKSDTPRIEIYEYKGGIKEYVAYMNREKQPLHEEIIYVQGERN 255
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
+ ++++LQWC+DAY+D +LG+AN+IRTIDGGTH+EG+KA LTRTLN++ +K +K+ +
Sbjct: 256 NVQVEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTRTLNAIARKRNKIKENE 315
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+LSGEHVREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYLE HP +
Sbjct: 316 SNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSFVGEVLTEYLEFHPSI 375
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
D+IL K++ A KAA AA+ AR+LVR+KSVL SS LPGKLADCSS P ESEIFIVEGDS
Sbjct: 376 ADAILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSSRDPSESEIFIVEGDS 435
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRR QAILPLRGKILN+E+ D+A +YKN E+Q+LI ALGLGVKGE+F
Sbjct: 436 AGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEVQSLITALGLGVKGEEFDSAQ 495
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+I+I+TDADVDGAHIRTLLLTFFYRY++ L ++G IY+ PPLYKVERGK +YCY
Sbjct: 496 LRYHRIVIMTDADVDGAHIRTLLLTFFYRYKRALIEQGFIYIACPPLYKVERGKNHEYCY 555
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ EL++ ++ P+ A Y+IQRFKGLGEMMP QLW TT+NPE R +KQ+ IEDAAEA+ +
Sbjct: 556 SERELQQHIATLPTKANYNIQRFKGLGEMMPEQLWTTTMNPETRKMKQVEIEDAAEADRI 615
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG RV R+E I+ + +NL LDI
Sbjct: 616 FTILMGDRVAPRREFIETYGSKLNLTDLDI 645
>gi|416374474|ref|ZP_11683197.1| DNA gyrase subunit B [Crocosphaera watsonii WH 0003]
gi|357266694|gb|EHJ15286.1| DNA gyrase subunit B [Crocosphaera watsonii WH 0003]
Length = 642
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 304/510 (59%), Positives = 392/510 (76%), Gaps = 14/510 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG P+ +L D K GT + F PD Q+F+ I+FD++T+AGR++ELA+
Sbjct: 142 HTQRYERGIPLGSLDTKP---DKKHSTGTSVSFLPDIQIFSGGIEFDYSTLAGRLKELAY 198
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I RKE+ YNE Y + GG++EYV ++ DK PLH D++ + +
Sbjct: 199 LNAGVKITFTDHRKEEP------YNETYCYEGGIKEYVTYMCRDKDPLHQDIIYVSGEKN 252
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G +++AL WC DAYSD +LG+AN+IRTIDGGTH+EG+K LTRT+N++ +K +K+ D
Sbjct: 253 GTQVEVALLWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNNVARKRNKLKEND 312
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L GE+VREGLT +ISV+VP PEFEGQTKT+LGN EVR +VD V E LTEYLE +P V
Sbjct: 313 ANLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFNPQV 372
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
D+I+ K++ A KAA AA+RAR+LVR+KSVL SS LPGKLADCSS PEESEIF+VEGDS
Sbjct: 373 ADNIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSSRDPEESEIFLVEGDS 432
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKI+N+E+ D+A +YKN EIQ+LI ALGLG+KGE+F E
Sbjct: 433 AGGSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEIQSLITALGLGIKGEEFDSEQ 492
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+I+I+TDADVDGAHIRTLLLTFFYRYQ++L D+G +Y+ PPLYKVERG+ YCY
Sbjct: 493 LRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYVYIACPPLYKVERGRNHVYCY 552
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ +L++ +S P+NA Y+IQRFKGLGEMMP QLWETT+NPE R +KQ+ IEDAAEA+ +
Sbjct: 553 NERQLQEHINSLPNNANYTIQRFKGLGEMMPTQLWETTMNPETRSMKQVEIEDAAEADRI 612
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG RV R+E I+ +NL LDI
Sbjct: 613 FTILMGDRVAPRREFIETYGPKLNLTDLDI 642
>gi|443654055|ref|ZP_21131209.1| DNA gyrase, B subunit [Microcystis aeruginosa DIANCHI905]
gi|443333902|gb|ELS48439.1| DNA gyrase, B subunit [Microcystis aeruginosa DIANCHI905]
Length = 616
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 302/504 (59%), Positives = 387/504 (76%), Gaps = 6/504 (1%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
Q+Y RG PVT L V +++ GTR+ F PD ++F+ I+FD++T++GR+RELA+LN
Sbjct: 118 QRYERGIPVTEL---VSSPSQEEKTGTRVNFLPDTEIFSQGIEFDYSTLSGRLRELAYLN 174
Query: 65 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDL 123
+ I D E+ Y + GG++EYV ++ +K+ LH D++ + +GI I++
Sbjct: 175 AGVKITF--SDYRAEEPHIETYCYEGGIKEYVAYMCREKETLHKDIIYVSGEKNGINIEV 232
Query: 124 ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGE 183
A QWC DAYSD +LG+AN+IRTIDGGTH+EG+KA LTRTLN++ +K +K+ + +L+GE
Sbjct: 233 AFQWCIDAYSDNILGFANNIRTIDGGTHLEGLKAVLTRTLNNVARKRNKIKENEPNLAGE 292
Query: 184 HVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILS 243
+VREGLT +ISV+VP PEFEGQTKT+LGN EVR +VD V E L EYLE +P V D+I+
Sbjct: 293 NVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGETLNEYLEQNPQVADTIIE 352
Query: 244 KSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAK 303
K++ A KAA AA+RARDLVR+KSVL SS LPGKLADCS PE+SEI+IVEGDSAGGSAK
Sbjct: 353 KAVQAYKAAEAARRARDLVRRKSVLESSPLPGKLADCSERDPEKSEIYIVEGDSAGGSAK 412
Query: 304 QGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKI 363
QGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGEDF LRYH+I
Sbjct: 413 QGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLGIKGEDFDPSQLRYHRI 472
Query: 364 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELK 423
+++TDADVDGAHIRTLLLTFFYRYQK L D+G +Y+ PPLYK+ERGK YCY D EL+
Sbjct: 473 VLMTDADVDGAHIRTLLLTFFYRYQKNLIDQGYVYIACPPLYKLERGKNHSYCYSDRELQ 532
Query: 424 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 483
+ + FPSNA Y+IQRFKGLGEMMP QLW+TT+NPE R LK++ IEDAA+A +F+ LMG
Sbjct: 533 QKIAEFPSNANYTIQRFKGLGEMMPQQLWDTTMNPETRTLKRVEIEDAAKAEELFTILMG 592
Query: 484 ARVDTRKELIQNAANLVNLDHLDI 507
RV R+E I+ +NL LDI
Sbjct: 593 DRVAPRREFIETHGPRLNLTDLDI 616
>gi|159028965|emb|CAO87426.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 640
Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust.
Identities = 302/506 (59%), Positives = 388/506 (76%), Gaps = 6/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG PVT L V +++ GTR+ F PD ++F+ I+FD++T++GR+RELA+
Sbjct: 140 HTQRYERGIPVTEL---VSSPSQEEKTGTRVNFLPDTEIFSQGIEFDYSTLSGRLRELAY 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I D E+ Y + GG++EYV ++ +K+ LH D++ + +GI I
Sbjct: 197 LNAGVKITF--SDYRAEEPHIETYCYEGGIKEYVAYMCREKETLHKDIIYVSGEKNGINI 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A QWC DAYSD +LG+AN+IRTIDGGTH+EG+KA LTRTLN++ +K +K+ + +L+
Sbjct: 255 EVAFQWCIDAYSDNILGFANNIRTIDGGTHLEGLKAVLTRTLNNVARKRNKIKENEPNLA 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE+VREGLT +ISV+VP PEFEGQTKT+LGN EVR +VD V E L EYLE +P V D+I
Sbjct: 315 GENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGETLNEYLEQNPQVADTI 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ A KAA AA+RARDLVR+KSVL SS LPGKLADCS PE+SEI+IVEGDSAGGS
Sbjct: 375 IEKAVQAYKAAEAARRARDLVRRKSVLESSPLPGKLADCSERDPEKSEIYIVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGEDF LRYH
Sbjct: 435 AKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLGIKGEDFDPSQLRYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+I+++TDADVDGAHIRTLLLTFFYRYQK L D+G +Y+ PPLYK+ERGK YCY D E
Sbjct: 495 RIVLMTDADVDGAHIRTLLLTFFYRYQKNLIDQGYVYIACPPLYKLERGKNHSYCYSDRE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ + FPSNA Y+IQRFKGLGEMMP QLW+TT+NPE R LK++ IEDAA+A +F+ L
Sbjct: 555 LQQKIAEFPSNANYTIQRFKGLGEMMPQQLWDTTMNPETRTLKRVEIEDAAKAEELFTIL 614
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RV R+E I+ +NL LDI
Sbjct: 615 MGDRVAPRREFIETHGPRLNLTDLDI 640
>gi|88809918|ref|ZP_01125423.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 7805]
gi|88786108|gb|EAR17270.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 7805]
Length = 655
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 296/510 (58%), Positives = 388/510 (76%), Gaps = 5/510 (0%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG P+ +L P + + R GT +RF PD ++FT I FD+ T++ R+RELA+
Sbjct: 146 HRQRFERGAPIGSLVSEPQPAEEEGRTGTSVRFKPDIEIFTVGIVFDYATLSARLRELAY 205
Query: 63 LNPKLTIALRKEDS---DPEKNQYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I R E D E N + E YF+ GG++EYV ++N +K LH +++ + D
Sbjct: 206 LNGGVRIVFRDERENARDAEGNPHEEIYFYEGGIKEYVAYMNAEKDALHPEIIYVNAEKD 265
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G++++ ALQWC DAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLN+ KK K+ D
Sbjct: 266 GVSVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNTFAKKRGKRKESD 325
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT ++SV+VP PEFEGQTKT+LGN EVR +VD V E L++YLE +P V
Sbjct: 326 SNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGESLSQYLEFNPGV 385
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+D IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDS
Sbjct: 386 IDMILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDS 445
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGEDF +
Sbjct: 446 AGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLGIKGEDFDVKN 505
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+++I+TDADVDGAHIRTLLLTFFYRYQK L + G IY+ PPLYKVERGK YCY
Sbjct: 506 LRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVEGGYIYIACPPLYKVERGKNHTYCY 565
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+++EL+K F A Y+IQRFKGLGEMMP QLWETT++P R +K++ IEDA EA+ +
Sbjct: 566 NESELQKTLEGFGEKANYNIQRFKGLGEMMPKQLWETTMDPTTRTMKRVEIEDALEADRI 625
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG +V R+E I+ + +++ LDI
Sbjct: 626 FTILMGDKVAPRREFIETHSAELDMAALDI 655
>gi|434405383|ref|YP_007148268.1| DNA gyrase subunit B [Cylindrospermum stagnale PCC 7417]
gi|428259638|gb|AFZ25588.1| DNA gyrase subunit B [Cylindrospermum stagnale PCC 7417]
Length = 646
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 301/510 (59%), Positives = 390/510 (76%), Gaps = 8/510 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG VT L + R GT + F PD Q+FTT+I+FD+ T++GR+RELA+
Sbjct: 140 FTQRYERGAAVTELQAKSY---KEARTGTSVTFKPDTQIFTTSIEFDYITLSGRLRELAY 196
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDG 118
LN + I R E + + Y + GG++EY+ ++N +K PLH+ ++ + + +
Sbjct: 197 LNAGVKITFTDHRLELLKSDTAKVETYEYKGGIKEYIAYMNREKLPLHEEIIYVQGERNN 256
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ I+++LQWC+DAY+D +LG+AN+IRT+DGGTH+EG+KA LTRTLN++ +K +K+ +
Sbjct: 257 VQIEVSLQWCTDAYTDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKENEP 316
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSGEHVREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYLE P V
Sbjct: 317 NLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPGVA 376
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
DSIL K++ A KAA AA+ AR+LVR+KSVL SS LPGKLADCS+ P ESEI+IVEGDSA
Sbjct: 377 DSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSTRDPSESEIYIVEGDSA 436
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRR QAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLGVKG++F L
Sbjct: 437 GGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEIQALITALGLGVKGDEFDAAQL 496
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ-VQYCY 417
RYH+I+I+TDADVDGAHIRTLLLTFFYRYQ+ L ++G IY+ PPL+KVERG+ +YCY
Sbjct: 497 RYHRIVIMTDADVDGAHIRTLLLTFFYRYQRALIEQGFIYIACPPLFKVERGRSDPKYCY 556
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
D EL++ ++FPSNA Y+IQRFKGLGEMMP QLW TT+NPE R LKQ+ IEDAAEA+ +
Sbjct: 557 SDRELQQHIATFPSNANYNIQRFKGLGEMMPAQLWTTTMNPETRTLKQVEIEDAAEADRI 616
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG RV R+E I+ + +NL LDI
Sbjct: 617 FTILMGDRVAPRREFIETYGSKLNLTDLDI 646
>gi|300865369|ref|ZP_07110180.1| DNA gyrase subunit B [Oscillatoria sp. PCC 6506]
gi|300336672|emb|CBN55330.1| DNA gyrase subunit B [Oscillatoria sp. PCC 6506]
Length = 646
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 301/513 (58%), Positives = 397/513 (77%), Gaps = 14/513 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q++ RG PVT L V ++R GT + F PD Q+F+T I+FD+ ++GR+RELA+
Sbjct: 140 HNQRFERGIPVTDL---VDKPSKENRSGTSVSFLPDTQIFSTGIEFDYTILSGRLRELAY 196
Query: 63 LNP--KLTIALRK----EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKD 115
LN K+T + R+ + S+P Y + GG++EY+ ++N DK+PLH+ V F + +
Sbjct: 197 LNAGVKITFSDRRLELLKSSEP---HIETYCYEGGIKEYIAYMNRDKQPLHEEVIFIQGE 253
Query: 116 VDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKD 175
+ + ++++LQWC DAYSD +LG+AN+IRTIDGGTH+EG+KA LTRT+N++ +K +K+
Sbjct: 254 RNNVQVEVSLQWCIDAYSDNVLGFANNIRTIDGGTHLEGLKAVLTRTMNAIARKRNKIKE 313
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
+ +L GE++REGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYLE P
Sbjct: 314 NEPNLGGENIREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRP 373
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
V D+IL K++ A KAA AA+RARDLVR+KSVL SS LPGKLADCSS P +SEI++VEG
Sbjct: 374 QVADTILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCSSRDPSKSEIYLVEG 433
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK 355
DSAGGSAKQGRDR+FQAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG++G++F
Sbjct: 434 DSAGGSAKQGRDRQFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLGIRGDEFDP 493
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
LRYH I+I+TDADVDGAHIRTLLLTFFYRYQ++L D+G IY+ PPLYKVERG+ Y
Sbjct: 494 SQLRYHHIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYIYIACPPLYKVERGRNHFY 553
Query: 416 CYDDAELKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
CY D EL+ +++ FP+NA Y+IQRFKGLGEMMP QLWETT+NPE R LK++ IEDAAEA
Sbjct: 554 CYSDRELQNLIRNEFPANANYTIQRFKGLGEMMPQQLWETTMNPESRTLKRVEIEDAAEA 613
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ +F+ LMG RV R+E I+ +NL LDI
Sbjct: 614 DRIFTILMGDRVAPRREFIETYGPKLNLTDLDI 646
>gi|359459125|ref|ZP_09247688.1| DNA gyrase subunit B [Acaryochloris sp. CCMEE 5410]
Length = 646
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 302/508 (59%), Positives = 385/508 (75%), Gaps = 8/508 (1%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
Q++ RG P + L P D K+ GT I F PD +FT +FD+ T+A R+RELA+LN
Sbjct: 142 QRFERGIPKSELIAE--PTDRKE-SGTAITFLPDNTIFTVTTEFDYKTLASRLRELAYLN 198
Query: 65 PKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
+ I+ R E + ++ + Y + GG++EYV ++N DK+P+H+ + + + +
Sbjct: 199 AGVEISFHDNRLELLEADEPKVETYRYDGGIKEYVDYMNRDKEPIHEECIYVEGERNNVQ 258
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++ALQWC DAYSD +LG+AN+IRTIDGGTH+EG+K LTRT+NSL +K +KD D +L
Sbjct: 259 VEVALQWCRDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNSLARKRSKLKDGDSNL 318
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
GEH+REGLT +ISV+VP PEFEGQTKT+LGN EVR +VD V E LTEYL+ HP+V DS
Sbjct: 319 GGEHIREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLDFHPNVADS 378
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
++ K+L A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P SEI+IVEGDSAGG
Sbjct: 379 VIEKALQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSTSEIYIVEGDSAGG 438
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGE+F LRY
Sbjct: 439 SAKQGRDRGFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLGIKGEEFDVSQLRY 498
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
H+II++TDADVDGAHIRTLLLTFFYRYQ+ L D+G IY+ PPLYK+ERG+ YCY D
Sbjct: 499 HRIILMTDADVDGAHIRTLLLTFFYRYQRELIDQGYIYIACPPLYKIERGRSHYYCYSDR 558
Query: 421 ELKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+ V+ FP+NA Y+IQRFKGLGEMMP QLW+TT+NPE R LKQ+ IEDAAEA+ +F+
Sbjct: 559 ELQNLVQHEFPANANYTIQRFKGLGEMMPTQLWDTTMNPETRTLKQIDIEDAAEADRIFT 618
Query: 480 SLMGARVDTRKELIQNAANLVNLDHLDI 507
LMG RV R+E I+ +NL LDI
Sbjct: 619 ILMGDRVAPRREFIETHGPRLNLAELDI 646
>gi|158337618|ref|YP_001518793.1| DNA gyrase subunit B [Acaryochloris marina MBIC11017]
gi|158307859|gb|ABW29476.1| DNA gyrase, B subunit [Acaryochloris marina MBIC11017]
Length = 646
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 303/508 (59%), Positives = 386/508 (75%), Gaps = 8/508 (1%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
Q++ RG P + L V P D K+ GT I F PD +FT +FD+ T+A R+RELA+LN
Sbjct: 142 QRFERGIPKSELV--VEPTDRKE-SGTAITFLPDDTIFTVTTEFDYKTLASRLRELAYLN 198
Query: 65 PKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
+ I+ R E + ++ + Y + GG++EYV ++N DK+P+H+ + + + +
Sbjct: 199 AGVEISFHDNRLELLEADEPKVETYRYDGGIKEYVDYMNRDKEPIHEECIYVEGERNNVQ 258
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++ALQWC DAYSD +LG+AN+IRTIDGGTH+EG+K LTRT+NSL +K +KD D +L
Sbjct: 259 VEVALQWCRDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNSLARKRSKLKDGDSNL 318
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
GEH+REGLT +ISV+VP PEFEGQTKT+LGN EVR +VD V E LTEYL+ HP+V DS
Sbjct: 319 GGEHIREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLDFHPNVADS 378
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
++ K+L A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P SEI+IVEGDSAGG
Sbjct: 379 VIEKALQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSTSEIYIVEGDSAGG 438
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGE+F LRY
Sbjct: 439 SAKQGRDRGFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLGIKGEEFDVSQLRY 498
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
H+II++TDADVDGAHIRTLLLTFFYRYQ+ L D+G IY+ PPLYK+ERG+ YCY D
Sbjct: 499 HRIILMTDADVDGAHIRTLLLTFFYRYQRELIDQGYIYIACPPLYKIERGRSHYYCYSDR 558
Query: 421 ELKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+ V+ FP+NA Y+IQRFKGLGEMMP QLW+TT+NPE R LKQ+ IEDAAEA+ +F+
Sbjct: 559 ELQNLVQHEFPANANYTIQRFKGLGEMMPTQLWDTTMNPETRTLKQIDIEDAAEADRIFT 618
Query: 480 SLMGARVDTRKELIQNAANLVNLDHLDI 507
LMG RV R+E I+ +NL LDI
Sbjct: 619 ILMGDRVAPRREFIETHGPRLNLAELDI 646
>gi|334120265|ref|ZP_08494347.1| DNA gyrase, B subunit [Microcoleus vaginatus FGP-2]
gi|333457053|gb|EGK85680.1| DNA gyrase, B subunit [Microcoleus vaginatus FGP-2]
Length = 646
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 301/511 (58%), Positives = 388/511 (75%), Gaps = 8/511 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E+ Q+Y RG PVT L + R GT + F PD Q+F+T I+FD+ +AGR+REL
Sbjct: 139 EHLQRYERGFPVTELNAKP---NKGTRTGTSVSFLPDTQIFSTGIEFDYTILAGRLRELG 195
Query: 62 FLNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVD 117
+LN + I R E + + Y + GG++EY+ ++N +K+PLH+ V+ + + +
Sbjct: 196 YLNAGVRITFSDHRLELLKSSEPRIETYCYEGGIKEYIAYMNREKQPLHEEVIYVQGERN 255
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
+ I++ALQWC DA+SD +LG+AN+IRTIDGGTH+EG+KA LTRT+NS+ +K +K+ +
Sbjct: 256 NVQIEVALQWCVDAFSDNVLGFANNIRTIDGGTHLEGLKAVLTRTMNSIARKRNKIKENE 315
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE+VREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYLE P V
Sbjct: 316 PNLAGENVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPQV 375
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
D+IL K++ A KAA AA+RARDLVR+KSVL SS LPGKLADCSS P SEI++VEGDS
Sbjct: 376 ADAILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCSSRDPALSEIYLVEGDS 435
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDR+FQAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGE+F
Sbjct: 436 AGGSAKQGRDRQFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLGIKGEEFDPGQ 495
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH I+I+TDADVDGAHIRTLLLTFFYRYQ+ L D+G IY+ PPLYKVERG+ YCY
Sbjct: 496 LRYHHIVIMTDADVDGAHIRTLLLTFFYRYQRALVDQGYIYIACPPLYKVERGRNHYYCY 555
Query: 418 DDAELKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
D E+ +++ FP+NA Y+IQRFKGLGEMMP QLW+TT+NPE R LK++ IEDAAEA+
Sbjct: 556 SDREMNNLIRNEFPANANYTIQRFKGLGEMMPTQLWDTTMNPETRTLKRVEIEDAAEADR 615
Query: 477 VFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+F+ LMG RV R+E I+ +NL LDI
Sbjct: 616 IFTILMGDRVAPRREFIETYGPKLNLLDLDI 646
>gi|209525244|ref|ZP_03273786.1| DNA gyrase, B subunit [Arthrospira maxima CS-328]
gi|423065151|ref|ZP_17053941.1| DNA topoisomerase IV subunit B [Arthrospira platensis C1]
gi|209494259|gb|EDZ94572.1| DNA gyrase, B subunit [Arthrospira maxima CS-328]
gi|406713283|gb|EKD08454.1| DNA topoisomerase IV subunit B [Arthrospira platensis C1]
Length = 645
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 303/510 (59%), Positives = 396/510 (77%), Gaps = 9/510 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQ-GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
Y Q+Y RG PVT + H SK+ Q GT + F PD ++FTT I+F+++TIA R+RELA
Sbjct: 140 YVQRYERGVPVTEVKEH----SSKETQTGTSVCFKPDTKIFTTGIEFEYDTIASRLRELA 195
Query: 62 FLNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
+LN + I L R E E+ + Y + GG++EYV ++N +K+ LH D + + +
Sbjct: 196 YLNAGVRITLTDNRLELLKREEAKVESYCYEGGIKEYVTYMNREKQALHEDTIYVSGERN 255
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
+ +++ALQWC DAYSDT+LG+AN+IRT+DGGTH+EG+K LTRT+N++ +K +KD +
Sbjct: 256 NVQVEVALQWCVDAYSDTILGFANNIRTVDGGTHLEGLKTVLTRTMNAIARKRNKIKDNE 315
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L GE+VREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTE+L+ +P+V
Sbjct: 316 PNLGGENVREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEFLDFNPNV 375
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
D+IL K++ A KAA AA+RARDLVR+KSVL SS LPGKLADCSS PEESEIF+VEGDS
Sbjct: 376 ADAILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCSSRDPEESEIFLVEGDS 435
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRR QAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGE+F
Sbjct: 436 AGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLGIKGEEFDPSQ 495
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHK+II+TDADVDGAHIRTLLLTFFYRYQ+ L D+G IY+ PPLYKVERG+ YCY
Sbjct: 496 LRYHKVIIMTDADVDGAHIRTLLLTFFYRYQRELVDQGFIYIACPPLYKVERGRNHYYCY 555
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ +L++ + FP NA Y+IQRFKGLGEMMP QLW+TT+NPE R +K++ IEDAAEA+ +
Sbjct: 556 NEQQLQQQLAEFPDNANYTIQRFKGLGEMMPNQLWDTTMNPETRSIKRVEIEDAAEADHI 615
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG RV R++ I++ A +++ LDI
Sbjct: 616 FTVLMGDRVAPRRQFIEDHAPRLDITDLDI 645
>gi|427711338|ref|YP_007059962.1| DNA gyrase subunit B [Synechococcus sp. PCC 6312]
gi|427375467|gb|AFY59419.1| DNA gyrase subunit B [Synechococcus sp. PCC 6312]
Length = 640
Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust.
Identities = 297/506 (58%), Positives = 392/506 (77%), Gaps = 6/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG P+T L P +++R+GT + F+PD+Q+FT I+F+ + R+RELA+
Sbjct: 140 FTQRYERGVPMTALEPS--PA-TENRRGTSVTFFPDRQIFTETIEFEAKILTNRLRELAY 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I D+ E Q Y + GG+ EY+Q++ DK+PLH +++ + + + + +
Sbjct: 197 LNAGIRIEFI--DARGEIPQSEVYCYEGGIREYIQYMIQDKEPLHPEMIYVQGEKNDVQV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQWCSDAY+++++G+AN+IRT +GGTH+EG+KA LTRTLNS+ +K +K+ D +L+
Sbjct: 255 EVALQWCSDAYNESLMGFANNIRTNEGGTHLEGLKAVLTRTLNSIARKRNKLKEGDSNLA 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE++REGLT I+SV+VPNPEFEGQTKT+LGN EVR +VD V E LTEYL+ P D+I
Sbjct: 315 GENIREGLTAIVSVKVPNPEFEGQTKTKLGNTEVRGIVDSVVGEALTEYLDFRPQAADAI 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K++ A AA AA+RAR++VR+KSVL SS+LPGKLADCSS P ESEIFIVEGDSAGGS
Sbjct: 375 LEKAIQAFNAAEAARRAREMVRRKSVLESSTLPGKLADCSSRDPSESEIFIVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EI LI ALGLG+KGEDF LRYH
Sbjct: 435 AKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIHALITALGLGIKGEDFDSSQLRYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+I+I+TDADVDGAHIRTLLLTFFYRYQ+ L D+G IY+ PPLYK+ERG+Q YCY+D +
Sbjct: 495 RIVIMTDADVDGAHIRTLLLTFFYRYQRDLVDQGYIYIACPPLYKLERGRQHYYCYNDRQ 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ +SFP NA Y+IQRFKGLGEMMP QLW+TT+NPE RM+K++ IEDAAEA+ +F+ L
Sbjct: 555 LQERIASFPENANYTIQRFKGLGEMMPQQLWDTTMNPETRMMKRVEIEDAAEADRMFTIL 614
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RV R+E I+ + L HLDI
Sbjct: 615 MGDRVAPRREFIETYGPKLALAHLDI 640
>gi|409993293|ref|ZP_11276439.1| DNA gyrase subunit B [Arthrospira platensis str. Paraca]
gi|291569892|dbj|BAI92164.1| DNA gyrase B subunit [Arthrospira platensis NIES-39]
gi|409935828|gb|EKN77346.1| DNA gyrase subunit B [Arthrospira platensis str. Paraca]
Length = 645
Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust.
Identities = 303/510 (59%), Positives = 395/510 (77%), Gaps = 9/510 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQ-GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
Y Q+Y RG PVT L H SK+ Q GT + F PD ++FTT I+F+++TIA R+RELA
Sbjct: 140 YVQRYERGVPVTELEEH----SSKESQTGTSVCFKPDTKIFTTGIEFEYDTIASRLRELA 195
Query: 62 FLNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
+LN + I L R E E+ + Y + GG++EYV ++N +K+ LH D + + +
Sbjct: 196 YLNAGVRITLTDNRLELLKREEAKVESYCYEGGIKEYVTYMNREKQALHEDTIYVSGERN 255
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
+ +++ALQWC DAYSDT+LG+AN+IRT+DGGTH+EG+K LTRT+N++ +K +KD +
Sbjct: 256 NVQVEVALQWCVDAYSDTILGFANNIRTVDGGTHLEGLKTVLTRTMNAIARKRNKIKDNE 315
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L GE+VREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTE+L+ +P+V
Sbjct: 316 PNLGGENVREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEFLDFNPNV 375
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
D+IL K++ A KAA AA+RARDLVR+KSVL SS LPGKLADCSS PEESEIF+VEGDS
Sbjct: 376 ADAILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCSSRDPEESEIFLVEGDS 435
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRR QAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGE+F
Sbjct: 436 AGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLGIKGEEFDSSQ 495
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHK+II+TDADVDGAHIRTLLLTFFYRYQ+ L +G IY+ PPLYKVERG+ YCY
Sbjct: 496 LRYHKVIIMTDADVDGAHIRTLLLTFFYRYQRELVAQGFIYIACPPLYKVERGRNHYYCY 555
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ +L++ + FP NA Y+IQRFKGLGEMMP QLW+TT+NPE R +K++ IEDAAEA+ +
Sbjct: 556 NEQQLQQQLAEFPDNANYTIQRFKGLGEMMPNQLWDTTMNPETRSIKRVEIEDAAEADHI 615
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG RV R++ I++ A +++ LDI
Sbjct: 616 FTVLMGDRVAPRRQFIEDHAPRLDITDLDI 645
>gi|317968499|ref|ZP_07969889.1| DNA gyrase subunit B [Synechococcus sp. CB0205]
Length = 653
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 299/511 (58%), Positives = 385/511 (75%), Gaps = 7/511 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E+ Q++ RG P+ TL + P R GT +RF PD ++FT I+FD+NT++ R+RELA
Sbjct: 145 EHRQRFERGAPIGTLA--IEPAADASRTGTTVRFKPDLEIFTVGIEFDYNTLSARLRELA 202
Query: 62 FLNPKLTIALRKEDS---DPEKNQYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDV 116
+LN + I R E + E + E Y + GG++EYV ++N +K LH D++ +
Sbjct: 203 YLNGGVKIVFRDERPAARNAEGEAHEEIYHYEGGIKEYVAYMNAEKDALHPDIIYVNSEK 262
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
DG+ I+ ALQWC DAYSD + G+AN+IRT+DGGTHIEG+K LTRTLN+ KK K+
Sbjct: 263 DGVQIEAALQWCVDAYSDNIFGFANNIRTVDGGTHIEGLKTVLTRTLNTFAKKRGKRKES 322
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
D +L+GE++REGLT ++SV+VP+PEFEGQTKT+LGN EVR +VD V E L EYLE +P
Sbjct: 323 DSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEALGEYLEFNPS 382
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
V+D IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGD
Sbjct: 383 VIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPGESEIYIVEGD 442
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SAGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGE+F +
Sbjct: 443 SAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDDK 502
Query: 357 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 416
LRYH+I+I+TDADVDGAHIRTLLLTFFYRYQK+L + G IY+ PPLYKVERGK YC
Sbjct: 503 NLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKSLVEGGYIYIACPPLYKVERGKNHTYC 562
Query: 417 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
Y++A+LK F A ++IQRFKGLGEMMP QLWETT++P RM+K++ I DAAEA+
Sbjct: 563 YNEADLKTTIEGFGEKANFTIQRFKGLGEMMPKQLWETTMDPSTRMMKRVEIADAAEADR 622
Query: 477 VFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+F+ LMG +V R+E I+ + ++L LDI
Sbjct: 623 IFTILMGDKVAPRREFIETHSAELDLAQLDI 653
>gi|376006244|ref|ZP_09783547.1| DNA gyrase subunit B [Arthrospira sp. PCC 8005]
gi|375325373|emb|CCE19300.1| DNA gyrase subunit B [Arthrospira sp. PCC 8005]
Length = 645
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 303/510 (59%), Positives = 395/510 (77%), Gaps = 9/510 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQ-GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
Y Q+Y RG PVT L H SK+ Q GT + F PD ++FTT I+F+++TIA R+RELA
Sbjct: 140 YVQRYERGVPVTELEEH----SSKETQTGTSVCFKPDTKIFTTGIEFEYDTIASRLRELA 195
Query: 62 FLNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
+LN + I L R E E+ + Y + GG++EYV ++N +K+ LH D + + +
Sbjct: 196 YLNAGVRITLTDNRLELLKREEAKVESYCYEGGIKEYVTYMNREKQALHEDTIYVSGERN 255
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
+ +++ALQWC DAYSDT+LG+AN+IRT+DGGTH+EG+K LTRT+N++ +K +KD +
Sbjct: 256 NVQVEVALQWCVDAYSDTILGFANNIRTVDGGTHLEGLKTVLTRTMNAIARKRNKIKDNE 315
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L GE+VREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTE+L+ +P+V
Sbjct: 316 PNLGGENVREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEFLDFNPNV 375
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
D+IL K++ A KAA AA+RARDLVR+KSVL SS LPGKLADCSS PEESEIF+VEGDS
Sbjct: 376 ADAILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCSSRDPEESEIFLVEGDS 435
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRR QAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGE+F
Sbjct: 436 AGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLGIKGEEFDPSQ 495
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHK+II+TDADVDGAHIRTLLLTFFYRYQ+ L +G IY+ PPLYKVERG+ YCY
Sbjct: 496 LRYHKVIIMTDADVDGAHIRTLLLTFFYRYQRELVAQGFIYIACPPLYKVERGRNHYYCY 555
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ +L++ + FP NA Y+IQRFKGLGEMMP QLW+TT+NPE R +K++ IEDAAEA+ +
Sbjct: 556 NEQQLQQQLAEFPDNANYTIQRFKGLGEMMPNQLWDTTMNPETRSIKRVEIEDAAEADHI 615
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG RV R++ I++ A +++ LDI
Sbjct: 616 FTVLMGDRVAPRRQFIEDHAPRLDITDLDI 645
>gi|33241245|ref|NP_876187.1| DNA gyrase subunit B [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33238775|gb|AAQ00840.1| DNA gyrase B subunit [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 658
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 295/510 (57%), Positives = 387/510 (75%), Gaps = 5/510 (0%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q++ RG P+ L PV K GT++ F PD +FTT I FD++ ++ R+RELA+
Sbjct: 149 HNQRFERGAPIGNLRSTKQPVSEKKLTGTKVNFKPDTDIFTTGIVFDYSILSSRLRELAY 208
Query: 63 LNPKLTIALRKED---SDPEKNQYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I R E SD E+ Y E YF+ GG++EYV ++N++K LH +++ + +
Sbjct: 209 LNGGVKIVFRDERQSVSDKEEKAYEEVYFYEGGIKEYVAYMNSEKDALHPEIIYVNSEKE 268
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G+ ++ ALQWC DAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLNS +K KD D
Sbjct: 269 GVQVEAALQWCIDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNSFARKRGKRKDGD 328
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT ++SV+VP PEFEGQTKT+LGN EVR +VD V E L +YLE +P V
Sbjct: 329 SNLAGENIREGLTVVLSVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGESLAQYLEFNPSV 388
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+D IL K++ A AA AA+RAR+LVR+KSVL S++LPGKLADCSS P ESEI+IVEGDS
Sbjct: 389 IDLILEKAIQAFNAAEAARRARELVRRKSVLESTTLPGKLADCSSRDPSESEIYIVEGDS 448
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI LGLG+KGEDF +
Sbjct: 449 AGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITGLGLGIKGEDFSLKN 508
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+++I+TDADVDGAHIRTLLLTFFYRYQK L + G +Y+ PPLYKVERGK YCY
Sbjct: 509 LRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVEGGYVYIACPPLYKVERGKNHTYCY 568
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ +L+K +SF A Y+IQRFKGLGEMMP QLWETT++P RM+K++ IEDA EA+ +
Sbjct: 569 NEGDLQKTITSFGEKANYTIQRFKGLGEMMPKQLWETTMDPSTRMMKRVEIEDALEADRI 628
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG +V R+E I+ + +++ LDI
Sbjct: 629 FTILMGDKVAPRREFIETHSVELDMASLDI 658
>gi|428203405|ref|YP_007081994.1| DNA gyrase subunit B [Pleurocapsa sp. PCC 7327]
gi|427980837|gb|AFY78437.1| DNA gyrase, B subunit [Pleurocapsa sp. PCC 7327]
Length = 642
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 299/507 (58%), Positives = 384/507 (75%), Gaps = 8/507 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG PVT L + + ++R GT I F PD Q+FT I+FD++T+AGR++ELA+
Sbjct: 142 HTQRYERGIPVTELE---IKPEKEERTGTSITFLPDLQIFTGGIEFDYSTLAGRLKELAY 198
Query: 63 LNPKLTIALR-KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
LN + I K S+P Y + GG++EYV ++ +K+PLH D++ + +GI
Sbjct: 199 LNAGVKITFSDKRGSEP---HVETYCYEGGIKEYVAYMCREKQPLHQDIIYVSGEKNGIQ 255
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+QWC DAYSD +LG+AN+IRTIDGGTH+EG+K LTRTLN++ +K +KD + +L
Sbjct: 256 LEVAMQWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTLNNVARKRNKIKDNEPNL 315
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
+GE+VREGLT +ISV+VP PEFEGQTKT+LGN EVR +VD E L EYLE HP V D+
Sbjct: 316 AGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSIAGEALNEYLEFHPQVADA 375
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K++ A KAA AA+RAR+LVR+KSVL SS LPGKLADCSS P ESEIF+VEGDSAGG
Sbjct: 376 IIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSSRDPSESEIFLVEGDSAGG 435
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGE+F LRY
Sbjct: 436 SAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLGIKGEEFDASQLRY 495
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
H+I+I+TDAD DG HIRTLLLTFFYRYQ+ L D G IY+ PPLYK+ERG+ YCY D
Sbjct: 496 HRIVIMTDADSDGGHIRTLLLTFFYRYQRELVDRGFIYIACPPLYKIERGRNHYYCYSDR 555
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
E ++ + FP+NA Y+IQRFKGLGEMMP QLWETT+NPE R LK++ IEDAAEA+ + +
Sbjct: 556 EKAQIINQFPANANYTIQRFKGLGEMMPDQLWETTMNPETRTLKRVEIEDAAEADRICTV 615
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMG RV R+E I+ + + LDI
Sbjct: 616 LMGDRVAPRREFIETHGSRLEFTDLDI 642
>gi|194476918|ref|YP_002049097.1| DNA topoisomerase IV subunit B [Paulinella chromatophora]
gi|171191925|gb|ACB42887.1| DNA topoisomerase IV subunit B [Paulinella chromatophora]
Length = 652
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 300/510 (58%), Positives = 389/510 (76%), Gaps = 8/510 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+HQ++ RG P+ LT ++R GT + F PD ++FTT+I FD++T+AGR+RELA+
Sbjct: 146 HHQRFERGVPIGLLTAQP---GEENRTGTSLTFKPDTKIFTTSITFDYSTLAGRLRELAY 202
Query: 63 LNPKLTIALRKE--DSDPEKN-QYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I+ R E S E Y E Y + GG++EYV ++N +K PLH +++ D
Sbjct: 203 LNGGVRISFRDERISSGGENGIAYEEVYCYKGGIKEYVAYINKEKDPLHSEIIYVNSHKD 262
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G+ ++ ALQWC D YSD++LG+AN+IRT+DGGTHIEG+K LTRTLNS KK KD D
Sbjct: 263 GVQVEAALQWCVDTYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNSFAKKRGKRKDSD 322
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT ++SV+VP+PEFEGQTKT+LGN EVR +VD V E LT+YLE +P V
Sbjct: 323 NNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEALTQYLEFNPSV 382
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
++ IL K++ A AA AA+RAR+LVR+KS+L SS+LPGKLADCSS P ESEI+IVEGDS
Sbjct: 383 IELILEKAIQAFNAAEAARRARELVRRKSILESSTLPGKLADCSSRDPSESEIYIVEGDS 442
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGE+F +++
Sbjct: 443 AGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDEKS 502
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+I+I+TDADVDGAHIRTLLLTFFYRYQK+L + G IY+ PPLYKVERGK YCY
Sbjct: 503 LRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKSLLEGGYIYIACPPLYKVERGKNHTYCY 562
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
D+ +L F + YSIQRFKGLGEMMP QLW TT++P+ RM+K++ IEDA EA+ +
Sbjct: 563 DENDLSTTLKRFREKSNYSIQRFKGLGEMMPKQLWSTTMDPQSRMMKRVEIEDALEADRI 622
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG +V R+E I+ + +NL LDI
Sbjct: 623 FTILMGDKVAPRREFIETHSADLNLAELDI 652
>gi|428222103|ref|YP_007106273.1| DNA gyrase subunit B [Synechococcus sp. PCC 7502]
gi|427995443|gb|AFY74138.1| DNA gyrase, B subunit [Synechococcus sp. PCC 7502]
Length = 646
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 296/506 (58%), Positives = 388/506 (76%), Gaps = 6/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++ RG P+ LT + D+ R+GT++RF PD Q+F T FD T+AGR++ELA+
Sbjct: 146 YTQRFERGFPIGILTG--VKTDNP-RRGTQVRFKPDAQIFLTETTFDFTTLAGRLKELAY 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I D E+ + Y + GG+ EYV ++ +K+ +H D++ + D + +
Sbjct: 203 LNAGVYIQF--SDRRGEEPRSEVYQYEGGIREYVTYMTREKEAIHNDIIYVNGERDHVQV 260
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQWCSDAY+D +LG+AN+IRTIDGGTH+EG+K LTRT+N+ +K K +K+ D +L+
Sbjct: 261 EVALQWCSDAYNDNILGFANNIRTIDGGTHLEGLKTVLTRTINANARKLKKLKEGDSNLA 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE+VREGLT +ISV+VP+PEFEGQTKT+LGNPEVR +VD V E L+EYLE HP + SI
Sbjct: 321 GENVREGLTAVISVKVPDPEFEGQTKTKLGNPEVRGIVDSFVGEVLSEYLEFHPAIAASI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ + AA AA+RAR+LVR+KS L SS+LPGKLADCSS P ESE+FIVEGDSAGGS
Sbjct: 381 IDKAVQSFNAAEAARRARELVRRKSALESSTLPGKLADCSSRDPRESEVFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGK+LN+E+ +++ +YKN EIQ LI LG+G++GE+F LRYH
Sbjct: 441 AKQGRDRHFQAILPLRGKVLNIEKAEDSKIYKNAEIQALITGLGMGIRGEEFNLAQLRYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KII+L DADVDGAHIRTLLLTFFYRYQ+ L D+G IY+G PPLYKVERGK +QYCY D E
Sbjct: 501 KIILLADADVDGAHIRTLLLTFFYRYQRQLVDQGYIYIGCPPLYKVERGKSMQYCYSDRE 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ ++FP+NA Y+IQRFKGLGEMMP+QLW+TT+NP R LKQ+ IEDAAEA+ +F+ L
Sbjct: 561 LQAHLATFPANANYNIQRFKGLGEMMPIQLWDTTMNPATRTLKQITIEDAAEADRIFTIL 620
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RV R+E I+ + +NL LDI
Sbjct: 621 MGDRVAPRREFIETYGSKLNLTDLDI 646
>gi|427703473|ref|YP_007046695.1| DNA gyrase subunit B [Cyanobium gracile PCC 6307]
gi|427346641|gb|AFY29354.1| DNA gyrase, B subunit [Cyanobium gracile PCC 6307]
Length = 652
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 298/510 (58%), Positives = 384/510 (75%), Gaps = 8/510 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG P+ TL P GT +RF PD ++F+ I+FD++T++ R+RELA+
Sbjct: 146 HRQRFERGLPIGTLASEDAP---DAHTGTSVRFRPDIEIFSGGIEFDYHTLSARLRELAY 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNE----YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I R E + Y + GG++EYV ++N +K PLH +++ D
Sbjct: 203 LNGGVRIVFRDERAAAAGADGAAHEEIYHYEGGIKEYVAYMNAEKDPLHPEIIYVNATKD 262
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G+ ++ ALQWC DAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLN+ KK KD D
Sbjct: 263 GVQVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNTFAKKRGKRKDAD 322
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT ++SV+VP+PEFEGQTKT+LGN EVR +VD +V E L EYLE +P V
Sbjct: 323 ANLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVRGIVDTTVGEALGEYLEFNPQV 382
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+D IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDS
Sbjct: 383 IDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDS 442
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGEDF+++
Sbjct: 443 AGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEDFEEKN 502
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+I+I+TDADVDGAHIRTLLLTFFYRYQK L + G IY+ PPLYKVERGK YCY
Sbjct: 503 LRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKALVEGGYIYIACPPLYKVERGKNHNYCY 562
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ ELKKV F A Y+IQRFKGLGEMMP QLWETT++PE RM+K++ IEDA EA+ +
Sbjct: 563 NENELKKVLEGFGEKANYNIQRFKGLGEMMPKQLWETTMDPETRMMKRVEIEDALEADRI 622
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG +V R+E I+ + ++ LDI
Sbjct: 623 FTILMGDKVAPRREFIETHSAELDFAQLDI 652
>gi|428224467|ref|YP_007108564.1| DNA gyrase subunit B [Geitlerinema sp. PCC 7407]
gi|427984368|gb|AFY65512.1| DNA gyrase subunit B [Geitlerinema sp. PCC 7407]
Length = 646
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 299/512 (58%), Positives = 389/512 (75%), Gaps = 12/512 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ ++ RG P+ ++ P + R GT + F PD Q+FT I+FD+ +A R+RELA+
Sbjct: 140 FKHRFERGVPIGEMSSEPYP---EARTGTSLTFMPDVQIFTGGIEFDYAILASRLRELAY 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNE-----YFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDV 116
LN + I+ DS E + NE Y + GG++EY+ +LN DK+P+H+ V+ + +
Sbjct: 197 LNGGVYISF--TDSRLELLKSNEPKVEVYHYEGGIQEYIAYLNRDKQPIHEEVIYVQGER 254
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
+G+ ++++LQWC DA++D +LG+AN+IRT+DGGTH+EG+KA LTRT+NS+ +K +K+
Sbjct: 255 EGVQLEVSLQWCVDAFTDNLLGFANNIRTVDGGTHLEGLKAVLTRTMNSIARKRNRLKEN 314
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
+ +L GEH+REGLT +ISV+VP+PEFEGQTKT+LGN EVR +V+ V E LTEYL P
Sbjct: 315 ESNLGGEHIREGLTGVISVKVPDPEFEGQTKTKLGNMEVRGIVESFVGEVLTEYLNFRPG 374
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
V D+IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS ESEIFIVEGD
Sbjct: 375 VADAILEKAIQAYNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDASESEIFIVEGD 434
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SAGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGEDF
Sbjct: 435 SAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEDFDSS 494
Query: 357 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 416
LRYH+I+I+TDADVDGAHIRTLLLTFFYRYQ++L ++G IY+ PPLYKVERG+ YC
Sbjct: 495 QLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLVEQGYIYIACPPLYKVERGRSHYYC 554
Query: 417 YDDAELKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
Y D EL+ ++ FP NA Y+IQRFKGLGEMMP QLWETT+NPE R LKQ+ IEDAAEA+
Sbjct: 555 YSDRELQGLIQREFPPNASYTIQRFKGLGEMMPTQLWETTMNPETRTLKQVEIEDAAEAD 614
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+F+ LMG RV R+E I+ + +NL LDI
Sbjct: 615 RIFTILMGDRVAPRREFIETYGSRLNLADLDI 646
>gi|434386573|ref|YP_007097184.1| DNA gyrase, B subunit [Chamaesiphon minutus PCC 6605]
gi|428017563|gb|AFY93657.1| DNA gyrase, B subunit [Chamaesiphon minutus PCC 6605]
Length = 645
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 297/509 (58%), Positives = 390/509 (76%), Gaps = 7/509 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ +G V+ L V+P ++R GT + F PD ++F + +FD T+A R +ELA+
Sbjct: 140 HTQRFEKGFAVSGL--EVMP-SPENRTGTTVTFQPDPEIFKESTEFDFATLASRFKELAY 196
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDG 118
LN + I+ R E ++ + Y+F GG+ EYV +LN +K+PLH+ ++ ++ D
Sbjct: 197 LNAGIRISFSDYRLELLGTDEPKVENYYFEGGIREYVSYLNENKQPLHEEIIYISQEQDK 256
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ +++ALQWC DAYSD +LG+AN+IRTIDGGTH++G+K LTRT+NS+ +K +K+ D
Sbjct: 257 VQVEVALQWCVDAYSDNILGFANNIRTIDGGTHLDGLKVVLTRTMNSIARKRNKLKEGDA 316
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L GE++REGLT I+SV+VPNPEFEGQTKT+LGN EVRK+VD V E LTEYLE P++
Sbjct: 317 NLGGENIREGLTAIVSVKVPNPEFEGQTKTKLGNTEVRKIVDSIVSEALTEYLEFRPNIA 376
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
D+IL K++ A AA AA+RA++LVR+KSVL SS+LPGKLADCSS P ESEIFIVEGDSA
Sbjct: 377 DAILDKAIQAFNAAEAARRAKELVRRKSVLESSTLPGKLADCSSKDPSESEIFIVEGDSA 436
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLGVKGEDFK E L
Sbjct: 437 GGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGVKGEDFKSEQL 496
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+I ++TDADVDGAHIRTLLLTFFYRYQ++L DEG +Y+ PPLYK+ERG+ YCY
Sbjct: 497 RYHRICLMTDADVDGAHIRTLLLTFFYRYQRSLIDEGYVYIACPPLYKLERGRNHYYCYS 556
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+ EL++ + FP+NA Y+IQRFKGLGEMMP QLWETT++ E R LK++ I+DAAEA+ +F
Sbjct: 557 ERELQQKIAEFPANANYTIQRFKGLGEMMPQQLWETTMDRETRTLKRVEIQDAAEADRIF 616
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ LMG RV R+E I+ + L LDI
Sbjct: 617 TILMGDRVAPRREFIETYGPKLGLMDLDI 645
>gi|443312981|ref|ZP_21042595.1| DNA gyrase, B subunit [Synechocystis sp. PCC 7509]
gi|442777131|gb|ELR87410.1| DNA gyrase, B subunit [Synechocystis sp. PCC 7509]
Length = 646
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 294/510 (57%), Positives = 388/510 (76%), Gaps = 8/510 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG P+ L D + R GT I F PD ++FT I+FD+ T+A R+RELA+
Sbjct: 140 FTQRFERGIPIGDLQSKP---DKETRTGTSITFKPDSEIFTVGIEFDYITLASRLRELAY 196
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDG 118
LN + I R E +++ Y +AGG++EY+ ++N DK+PLH+ ++ + + +
Sbjct: 197 LNAGVKITFTDHRLELLKSNESKTETYEYAGGIKEYISYINRDKQPLHEEIIYVQGERNN 256
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ ++++LQWC+D+Y+D +LG+AN+IRT +GGTH++G+KA LTRT+N++ +K +K+ +
Sbjct: 257 VQVEVSLQWCTDSYTDNVLGFANNIRTAEGGTHLDGLKAVLTRTMNAIARKRNKIKENEP 316
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSGEHVREGLT +ISV+VPNPEFEGQTKT+LGN EVR +VD V E LTEYLE P V
Sbjct: 317 NLSGEHVREGLTAVISVKVPNPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPPVA 376
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
D IL K++ A KAA AA+ AR+LVR+KSVL SS LPGKLADCS+ P ESEI+IVEGDSA
Sbjct: 377 DQILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSTRDPSESEIYIVEGDSA 436
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLGVKGE+F L
Sbjct: 437 GGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGVKGEEFDPSKL 496
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+I+I+TDADVDGAHIRTL+LTFFYRYQ++L ++G IY+ PPLYKVERG+ YCY
Sbjct: 497 RYHRIVIMTDADVDGAHIRTLILTFFYRYQRSLVEQGYIYIACPPLYKVERGRNHYYCYS 556
Query: 419 DAELKKV-KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ EL + ++ FP+NA Y+IQRFKGLGEMMP QLW+TT+NPE R LK++ IEDAAEA+ +
Sbjct: 557 ERELNNLTQNEFPANANYTIQRFKGLGEMMPTQLWDTTMNPESRTLKRIEIEDAAEADRI 616
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG RV R+E I+ +N LDI
Sbjct: 617 FTVLMGDRVAPRREFIETYGPRLNFAELDI 646
>gi|427418615|ref|ZP_18908798.1| DNA gyrase subunit B [Leptolyngbya sp. PCC 7375]
gi|425761328|gb|EKV02181.1| DNA gyrase subunit B [Leptolyngbya sp. PCC 7375]
Length = 645
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 289/510 (56%), Positives = 391/510 (76%), Gaps = 7/510 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E+ Q+Y RG+ L+ + + + GT + F PD+ +FT ++FD++T+AGR+RELA
Sbjct: 139 EHLQRYERGEAQGELS---VKSGADSQTGTSVSFKPDQLIFTETVEFDYSTLAGRLRELA 195
Query: 62 FLNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
+LN + I R E ++ + N YF+ GG+ EYV+++N +K+P+H D++ + +
Sbjct: 196 YLNAGVDITFTDHRLELLKADEPKINRYFYEGGIREYVEYINKEKQPIHPDIIYVTGEKN 255
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G+ ++ ALQW DAYSD ++G+AN+IRT+DGGTH+EG+KA LTRT+N+ +K KD +
Sbjct: 256 GVQVEAALQWSVDAYSDNLMGFANNIRTVDGGTHLEGLKAVLTRTMNNFARKRNKRKDNE 315
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT +ISV+VP PEFEGQTKT+LGN EVR +VD + E L+EYL+ +P+V
Sbjct: 316 PNLAGENIREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLIGETLSEYLDFNPNV 375
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+DSIL K++ + AA AA+RARDLVR+KSVL SS+LPGKLADCSS P ESEIFIVEGDS
Sbjct: 376 VDSILEKAIQSFNAAEAARRARDLVRRKSVLESSTLPGKLADCSSRDPAESEIFIVEGDS 435
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+E+ D++ +YKN E+Q+LI ALGLG+KGE+F
Sbjct: 436 AGGSAKQGRDRRFQAILPLRGKILNIEKTDDSKIYKNNEVQSLITALGLGIKGEEFDSSQ 495
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+I ++TDADVDGAHIRTLLLTFFYRYQ+ L D+G +Y+ PPLYK+ERG+ YCY
Sbjct: 496 LRYHRICLMTDADVDGAHIRTLLLTFFYRYQRALIDQGFVYIACPPLYKLERGRSHTYCY 555
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ EL++ S+ P+NA Y++QRFKGLGEMMP QLW+TT+NPE R LK++ IEDAAEA +
Sbjct: 556 SEQELQRGISALPANAKYNVQRFKGLGEMMPTQLWDTTMNPESRTLKKVEIEDAAEAERI 615
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG RV R+E I+ +N+ LDI
Sbjct: 616 FTVLMGDRVAPRREFIETYGPKLNMADLDI 645
>gi|411117920|ref|ZP_11390301.1| DNA gyrase subunit B [Oscillatoriales cyanobacterium JSC-12]
gi|410711644|gb|EKQ69150.1| DNA gyrase subunit B [Oscillatoriales cyanobacterium JSC-12]
Length = 645
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 299/509 (58%), Positives = 386/509 (75%), Gaps = 8/509 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG P + + DR GT + F PD +FT I FD+ T+AGR+RELAF
Sbjct: 141 HTQRFERGIPKGDMQVES---GAGDRTGTSVTFLPDSTIFTGGIVFDYATLAGRLRELAF 197
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDG 118
LN + I R++ + + + YF+ GG+ EYV ++N +K+PLH+ ++ + + +
Sbjct: 198 LNGGVRITFTDNRRDSPESGEPRTETYFYEGGIREYVTYMNREKQPLHEEIIYIQGERNN 257
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ +++ALQW +DAY+D +LG+AN+IRTIDGGTH+EG+K LTRTLNSL +K +KD D
Sbjct: 258 VQVEVALQWSADAYTDNLLGFANNIRTIDGGTHLEGLKTVLTRTLNSLARKRNKLKDDD- 316
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
L+GE++REGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYLE P V
Sbjct: 317 KLAGENIREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPSVA 376
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
D+I+ K+L A +AA AA++AR+LVR+KSVL SS+LPGKLADCSS P ESEIFIVEGDSA
Sbjct: 377 DAIIEKALEAFRAAEAARKARELVRRKSVLESSTLPGKLADCSSRDPAESEIFIVEGDSA 436
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGE+F+ L
Sbjct: 437 GGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFEPSQL 496
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+I+I+TDADVDGAHIRTLLLTFFYRYQ+ + D+G +Y+ PPLYK+ERG+ YCY
Sbjct: 497 RYHRIVIMTDADVDGAHIRTLLLTFFYRYQRAMVDQGFVYIACPPLYKIERGRNHYYCYS 556
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D E ++ SSFP NA Y IQRFKGLGEMMP QLW+TT+NPE R LK++ IEDAAEA+ F
Sbjct: 557 DRERDQITSSFPENAKYEIQRFKGLGEMMPQQLWDTTMNPETRTLKRVEIEDAAEADRTF 616
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ LMG RV R+E I+ + +NL LDI
Sbjct: 617 TVLMGDRVAPRREFIETHGSKLNLTDLDI 645
>gi|443318324|ref|ZP_21047579.1| DNA gyrase, B subunit [Leptolyngbya sp. PCC 6406]
gi|442782062|gb|ELR92147.1| DNA gyrase, B subunit [Leptolyngbya sp. PCC 6406]
Length = 646
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 295/511 (57%), Positives = 392/511 (76%), Gaps = 8/511 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
++ Q++ RG V+ +P D+ R+GT + F PD +FTT +F++ TI+ R+RELA
Sbjct: 139 KHTQRFERG--VSMGDLQSVP-DNSGRRGTLVSFSPDATIFTTGTEFEYGTISNRLRELA 195
Query: 62 FLNPKLTIA---LRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
+LN + + LR + ++ + +++ GG+ EYV ++N DK+PLH D++ + + D
Sbjct: 196 YLNAGVDVTFTDLRLDVLKSDQPLVSRFYYEGGIREYVAYINNDKQPLHEDIIHVQSEKD 255
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G+ ++ ALQWC DAYSD +LG+AN+IRTIDGGTH+EG+KA LTRTLN+L +K KD +
Sbjct: 256 GVQVEAALQWCVDAYSDNLLGFANNIRTIDGGTHLEGLKAVLTRTLNTLARKRSKRKDGE 315
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+LSGE++REGLT +ISV+VP+PEFEGQTKT+LGN EVR +V+ + E LTEYL+ HP++
Sbjct: 316 SNLSGENIREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVESVIGETLTEYLDFHPNI 375
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
D+IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEIFIVEGDS
Sbjct: 376 GDAILDKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIFIVEGDS 435
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDR+FQAILPLRGKILN+E+ D+A +YKN E+Q LI ALGLG+KGE+F
Sbjct: 436 AGGSAKQGRDRKFQAILPLRGKILNIEKTDDAKIYKNTEVQALITALGLGIKGEEFDVSQ 495
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+I ++TDADVDGAHIRTLLLTFFYRYQ+ L D+G +Y+ PPLYK+ERG+ YCY
Sbjct: 496 LRYHRICLMTDADVDGAHIRTLLLTFFYRYQRALIDQGYVYIACPPLYKIERGRNHWYCY 555
Query: 418 DDAELKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
D E + +++ FP+NA Y+ QRFKGLGEMMP QLWETT+NPE R LK++ IEDAAEA+
Sbjct: 556 SDRERDQLIQNEFPANANYTTQRFKGLGEMMPTQLWETTMNPESRTLKKVEIEDAAEADR 615
Query: 477 VFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+F+ LMG RV R+E I+ +NL+ LDI
Sbjct: 616 IFTVLMGDRVAPRREFIEKYGPRLNLEDLDI 646
>gi|148241191|ref|YP_001226348.1| DNA gyrase subunit B [Synechococcus sp. RCC307]
gi|147849501|emb|CAK26995.1| DNA gyrase subunit B [Synechococcus sp. RCC307]
Length = 657
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 298/510 (58%), Positives = 384/510 (75%), Gaps = 8/510 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG P+ +L K R GT + F PD ++FT I FD+ T++GR+RELA+
Sbjct: 151 HRQRFERGAPIGSLASEA---GEKGRTGTSVCFKPDIEIFTGGISFDYATLSGRLRELAY 207
Query: 63 LNPKLTIALRKE--DSDPEKNQYNE--YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I R E ++ E Q +E YF+ GG+ EYV ++N +K PLH D++ + D
Sbjct: 208 LNGGVKIVFRDERPEAAGEDGQPHEEIYFYEGGIREYVNYMNAEKDPLHPDIIYVNSEKD 267
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G+ ++ ALQWC DAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLN+ +K KD D
Sbjct: 268 GVQVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNTFARKRGKRKDSD 327
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT ++SV+VP+PEFEGQTKT+LGN EVR +VD V E L+EYLE HP V
Sbjct: 328 GNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVRGIVDTVVGEALSEYLEFHPQV 387
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+D IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDS
Sbjct: 388 IDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDS 447
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRR QAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGE+F
Sbjct: 448 AGGSAKQGRDRRNQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDVSN 507
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+I+I+TDADVDGAHIRTL+LTFFYRYQ+ L + G IY+ PPLYKVERGK YCY
Sbjct: 508 LRYHRIVIMTDADVDGAHIRTLILTFFYRYQRELVEGGYIYIACPPLYKVERGKNHTYCY 567
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ +LKK F A Y+IQRFKGLGEMMP QLWETT++P R +K++ IEDAA+A+ +
Sbjct: 568 NEQDLKKTLDGFGEKANYTIQRFKGLGEMMPQQLWETTMDPTTRTMKRVEIEDAAQADRI 627
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG +V R+E I+ + +NL LDI
Sbjct: 628 FTILMGDKVAPRREFIETHSAELNLADLDI 657
>gi|113954544|ref|YP_729329.1| DNA gyrase subunit B [Synechococcus sp. CC9311]
gi|113881895|gb|ABI46853.1| DNA gyrase, B subunit [Synechococcus sp. CC9311]
Length = 655
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 292/510 (57%), Positives = 386/510 (75%), Gaps = 5/510 (0%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG + +L P + K GT + F PD Q+FT I+FD++T++ R+RELA+
Sbjct: 146 HRQRFERGAAIGSLASEPQPAEEKGLTGTSVCFKPDHQIFTVGIEFDYSTLSARLRELAY 205
Query: 63 LNPKLTIALRKEDS---DPEKNQYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I R E D E E YF+ GG++EYV ++N +K PLH +++ + D
Sbjct: 206 LNGGVRIVFRDERQAARDQEGKPREELYFYEGGIKEYVAYMNAEKDPLHPEIIYVNSEKD 265
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G++++ ALQWC DAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLN+ KK K+ D
Sbjct: 266 GVSVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNTFAKKRGKRKEAD 325
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT ++SV+VP PEFEGQTKT+LGN EVR +VD V E L++YLE +P V
Sbjct: 326 SNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDNLVGESLSQYLEFNPGV 385
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+D IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDS
Sbjct: 386 IDMILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDS 445
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGEDF +
Sbjct: 446 AGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEDFDVKN 505
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+++I+TDADVDGAHIRTL+LTFFYRYQK L + G IY+ PPLYKVERGK YCY
Sbjct: 506 LRYHRVVIMTDADVDGAHIRTLILTFFYRYQKELVEGGYIYIACPPLYKVERGKNHTYCY 565
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ +L+K + F A Y+IQRFKGLGEMMP QLWETT++P RM+K++ ++DA EA+ +
Sbjct: 566 NEQQLQKTLAGFGEKANYNIQRFKGLGEMMPKQLWETTMDPSTRMMKRVEVQDALEADRI 625
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG +V R+E I+ + +++ LDI
Sbjct: 626 FTILMGDKVAPRREFIETHSADLDMASLDI 655
>gi|148238483|ref|YP_001223870.1| DNA gyrase subunit B [Synechococcus sp. WH 7803]
gi|147847022|emb|CAK22573.1| DNA gyrase subunit B [Synechococcus sp. WH 7803]
Length = 655
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 294/510 (57%), Positives = 383/510 (75%), Gaps = 5/510 (0%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG P+ +L P + R GT + F PD ++F+ I FD+ T++ R+RELA+
Sbjct: 146 HRQRFERGAPIGSLASEPQPAEEDGRTGTSVCFKPDIEIFSVGIVFDYATLSARLRELAY 205
Query: 63 LNPKLTIALRKEDS---DPEKNQYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I R E D E N + E YF+ GG++EYV ++N +K LH +++ + D
Sbjct: 206 LNGGVRIVFRDERESARDAEGNPHEETYFYEGGIKEYVAYMNAEKDALHPEIIYVNAEKD 265
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G++++ ALQWC DAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLN+ +K K+ D
Sbjct: 266 GVSVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNTFARKRGKRKEAD 325
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT ++SV+VP PEFEGQTKT+LGN EVR +VD V E L +YLE +P V
Sbjct: 326 SNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEALGQYLEFNPGV 385
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+D IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDS
Sbjct: 386 IDMILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDS 445
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGEDF +
Sbjct: 446 AGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEDFDVKN 505
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+++I+TDADVDGAHIRTLLLTFFYRYQK L D G IY+ PPLYKVERGK YCY
Sbjct: 506 LRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVDGGYIYIACPPLYKVERGKNHTYCY 565
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ EL+K F A Y+IQRFKGLGEMMP QLWETT++P R +K++ IEDA EA+ +
Sbjct: 566 NEPELQKTLEGFGEKANYNIQRFKGLGEMMPQQLWETTMDPTTRTMKRVEIEDALEADRI 625
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG +V R+E I+ + +++ LDI
Sbjct: 626 FTILMGDKVAPRREFIETHSAELDMTALDI 655
>gi|428301860|ref|YP_007140166.1| DNA gyrase subunit B [Calothrix sp. PCC 6303]
gi|428238404|gb|AFZ04194.1| DNA gyrase subunit B [Calothrix sp. PCC 6303]
Length = 645
Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust.
Identities = 296/509 (58%), Positives = 384/509 (75%), Gaps = 7/509 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG L + R GT I+F PD +FTT +FD+ T++ R+RELA+
Sbjct: 140 YTQRYERGVAQAELKNQPY---KEARTGTAIKFKPDDTIFTTGTEFDYTTLSSRLRELAY 196
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDG 118
LN + I R E + + Y + GG+ EYV ++N DK+ H+ ++ + +
Sbjct: 197 LNAGVRITFADNRLELLKSDTPRLETYEYKGGIREYVAYMNADKQAQHEEIIYVQGERHN 256
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ +++ALQWCSDAYSD +LG+AN+IRT+DGGTH+EG+K LTRT+N++ +K +K+ +
Sbjct: 257 VQVEVALQWCSDAYSDNVLGFANNIRTVDGGTHLEGLKTVLTRTMNAIARKRNKIKENES 316
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSGEHVREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYLE HP V
Sbjct: 317 NLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDTLVGEVLTEYLEFHPGVA 376
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
DSIL K++ A KAA AA+ AR+LVR+KSVL SS LPGKLADCS+ P ESEI++VEGDSA
Sbjct: 377 DSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSTRDPAESEIYLVEGDSA 436
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRRFQAILPLRGKILN+E+ D++ +YKN EIQ+LI ALGLGV+G++F L
Sbjct: 437 GGSAKQGRDRRFQAILPLRGKILNIEKTDDSKIYKNNEIQSLITALGLGVRGDEFDATQL 496
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+I+I+TDADVDGAHIRTLLLTFFYRYQ+ L ++G IY+ PPLYK+ERG+ QYCY
Sbjct: 497 RYHRIVIMTDADVDGAHIRTLLLTFFYRYQRALVEQGYIYIACPPLYKLERGRNHQYCYS 556
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D EL++ S FP NA Y+IQRFKGLGEMMP QLW+TT+NPE+R LK++ IEDAAEA+ +F
Sbjct: 557 DRELQQKISEFPDNANYTIQRFKGLGEMMPQQLWDTTMNPERRTLKRVEIEDAAEADRIF 616
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ LMG RV R+E I+ + +N+ LDI
Sbjct: 617 TILMGDRVAPRREFIETYGSKLNMLDLDI 645
>gi|159904302|ref|YP_001551646.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9211]
gi|159889478|gb|ABX09692.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9211]
Length = 658
Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust.
Identities = 295/508 (58%), Positives = 388/508 (76%), Gaps = 5/508 (0%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
Q++ RG PV LT P K GT + F PD Q+FT+ I+F++ T++ R+RELA+LN
Sbjct: 151 QRFERGVPVGGLTSKDQPSSQKGVTGTTVCFKPDNQIFTSGIEFEYATLSSRLRELAYLN 210
Query: 65 PKLTIALRKEDSDP---EKNQYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGI 119
+ I R E E + Y E YF+ GG++EYV ++N++K LH +++ + DG+
Sbjct: 211 GGVRIVFRDERKTSLTTEGDPYEEIYFYQGGIKEYVSYINSEKDALHPEIIYVNSEKDGV 270
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++ ALQWC DAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLNS +K KD D +
Sbjct: 271 QVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNSFARKRGKRKDGDNN 330
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE++REGLT ++SV+VP PEFEGQTKT+LGN EVR +VD V E L++YLE +P V+D
Sbjct: 331 LAGENIREGLTVVLSVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGESLSQYLEFNPSVID 390
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDSAG
Sbjct: 391 LILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDSAG 450
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR+FQAILPLRGKILN+E+ D++ +YKN EIQ+LI ALGLG+KGE+F + LR
Sbjct: 451 GSAKQGRDRKFQAILPLRGKILNIEKTDDSKIYKNTEIQSLITALGLGIKGEEFSSKNLR 510
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YH+++I+TDADVDGAHIRTLLLTFFYRYQK L + G IY+ PPLYKVERGK+ +YCY++
Sbjct: 511 YHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVEGGYIYIACPPLYKVERGKKHKYCYNE 570
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
++LKK F A Y+IQRFKGLGEMMP QLWETT++P RM+K++ IEDA EA+ +F+
Sbjct: 571 SDLKKTIDGFGEKANYTIQRFKGLGEMMPKQLWETTMDPSTRMMKKVEIEDALEADRIFT 630
Query: 480 SLMGARVDTRKELIQNAANLVNLDHLDI 507
LMG +V R++ I+ + ++L LDI
Sbjct: 631 ILMGDKVAPRRQFIETHSVELDLASLDI 658
>gi|318042881|ref|ZP_07974837.1| DNA gyrase subunit B [Synechococcus sp. CB0101]
Length = 653
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 297/511 (58%), Positives = 384/511 (75%), Gaps = 7/511 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E+ Q++ RG P+ +L P R GT + F PD ++FT I+FD++T++ R+RELA
Sbjct: 145 EHLQRFERGAPIGSLASK--PAADPSRTGTSVCFKPDIEIFTGGIEFDYHTLSARLRELA 202
Query: 62 FLNPKLTIALRKEDS---DPEKNQYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDV 116
+LN + I R E + E + E Y + GG++EYV ++N +K LH D++ +
Sbjct: 203 YLNGGVRIVFRDERPAARNAEGAAHEEIYHYEGGIKEYVAYMNAEKDALHPDIIYVNSEK 262
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
DG+ ++ ALQWC DAYSD + G+AN+IRT+DGGTHIEG+K LTRTLN+ KK KD
Sbjct: 263 DGVQVEAALQWCVDAYSDNIFGFANNIRTVDGGTHIEGLKTVLTRTLNAFAKKRGKRKDA 322
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
D +L+GE++REGLT ++SV+VP PEFEGQTKT+LGN EVR +VD V E L+EYLE +P
Sbjct: 323 DANLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEALSEYLEFNPS 382
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
V+D IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGD
Sbjct: 383 VIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPGESEIYIVEGD 442
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SAGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGE+F ++
Sbjct: 443 SAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDEK 502
Query: 357 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 416
LRYH+I+I+TDADVDGAHIRTLLLTFFYRYQK L + G IY+ PPLYKVERGK YC
Sbjct: 503 NLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKALVEGGYIYIACPPLYKVERGKNHSYC 562
Query: 417 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
Y++ +LK+V F A Y+IQRFKGLGEMMP QLWETT++P R +K++ IEDAAEA+
Sbjct: 563 YNEGDLKRVVEGFGEKANYTIQRFKGLGEMMPQQLWETTMDPTTRTMKRVEIEDAAEADR 622
Query: 477 VFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+F+ LMG +V R+E I+ + ++L LDI
Sbjct: 623 IFTILMGDKVAPRREFIETHSAELDLAQLDI 653
>gi|428205380|ref|YP_007089733.1| DNA gyrase subunit B [Chroococcidiopsis thermalis PCC 7203]
gi|428007301|gb|AFY85864.1| DNA gyrase subunit B [Chroococcidiopsis thermalis PCC 7203]
Length = 645
Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust.
Identities = 297/509 (58%), Positives = 383/509 (75%), Gaps = 7/509 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG P+ L + + GT +RF PD ++FT +FD+ T+AGR+RELA+
Sbjct: 140 HTQRYERGVPMGELQTKSF---KEAKTGTGVRFKPDAEIFTVGTEFDYITLAGRLRELAY 196
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDG 118
LN + I R E ++ + Y + GG+ EYV ++N DK+ LH+ + F + + +
Sbjct: 197 LNAGVRITFTDHRLELLKSQEPKVETYEYKGGIREYVSYINNDKQALHEEIIFVQGERNN 256
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ +++ALQWC+DAY+D +LG+AN+IRT+DGGTH+EG+K LTRTLN++ +K +KD +
Sbjct: 257 VQVEVALQWCTDAYTDNLLGFANNIRTVDGGTHLEGLKTVLTRTLNAIARKRNKIKDNEP 316
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSGEHVREGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYLE P +
Sbjct: 317 NLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPSIA 376
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
DSIL K++ A KAA AA+ AR+LVR+KSVL SS LPGKLADCSS P ESEIFIVEGDSA
Sbjct: 377 DSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSSRDPGESEIFIVEGDSA 436
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRR QAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLGVKGE+F L
Sbjct: 437 GGSAKQGRDRRNQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGVKGEEFDSSQL 496
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHKI+I+TDADVDGAHIRTLLLTFFYRYQ+ L ++G IY+ PPL+K+ERG+ YCY
Sbjct: 497 RYHKIVIMTDADVDGAHIRTLLLTFFYRYQRQLIEQGFIYIACPPLFKIERGRNHYYCYS 556
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+ E + + FP+NA Y+IQRFKGLGEMMP QLW+TT+N E R LK++ IEDAAEA+ +F
Sbjct: 557 ERERDQKIAEFPANANYTIQRFKGLGEMMPQQLWDTTMNNETRTLKRVEIEDAAEADRIF 616
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ LMG RV R+E I+ + +NL LDI
Sbjct: 617 TVLMGDRVAPRREFIETYGSRLNLVELDI 645
>gi|116074377|ref|ZP_01471639.1| DNA topoisomerase IV subunit B [Synechococcus sp. RS9916]
gi|116069682|gb|EAU75434.1| DNA topoisomerase IV subunit B [Synechococcus sp. RS9916]
Length = 655
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 294/510 (57%), Positives = 384/510 (75%), Gaps = 5/510 (0%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG + +L P + GT + F PD Q+FT I FD+ T+A R+RELA+
Sbjct: 146 HRQRFERGAAIGSLRSEEQPAEENGLTGTSVCFKPDIQIFTGGIVFDYATLAARLRELAY 205
Query: 63 LNPKLTIALRKEDS---DPEKNQYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I R E PE + E YF+ GG++EYV ++N +K LH D++ + D
Sbjct: 206 LNGGVRIVFRDEREAARTPEGEPHEEIYFYEGGIKEYVAYMNKEKDALHPDIIYVNSEKD 265
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G+ ++ ALQWCSDAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLN+ KK K+ D
Sbjct: 266 GVQVEAALQWCSDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNAFAKKLGKRKESD 325
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT ++SV+VP PEFEGQTKT+LGN EVR +VD V E L+++LE +P V
Sbjct: 326 SNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDNLVGEALSQFLEFNPSV 385
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+ IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDS
Sbjct: 386 IGLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDS 445
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGEDF +
Sbjct: 446 AGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEDFDVKN 505
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+++I+TDADVDGAHIRTLLLTFFYRYQK L + G IY+ PPLYKVERGK YCY
Sbjct: 506 LRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVEGGYIYIACPPLYKVERGKNHTYCY 565
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ +L+K ++FP A Y+IQRFKGLGEMMP QLWETT++P R +K++ IEDA EA+ +
Sbjct: 566 NEQDLQKTLAAFPEKANYNIQRFKGLGEMMPAQLWETTMDPTTRTMKRVEIEDALEADRI 625
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG +V R+E I+ + +++ +LDI
Sbjct: 626 FTILMGDKVAPRREFIETHSAELDMTNLDI 655
>gi|87301672|ref|ZP_01084512.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 5701]
gi|87283889|gb|EAQ75843.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 5701]
Length = 652
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 298/513 (58%), Positives = 380/513 (74%), Gaps = 14/513 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG P+ +L P + GT +RF PD ++F+ I FD+ T++GR+RELA+
Sbjct: 146 HRQRFERGTPIGSLRSEDDPSGA---TGTAVRFKPDIEIFSGGIDFDYATLSGRLRELAY 202
Query: 63 LNPKLTIALRKE-------DSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRK 114
LN + I R E D P + Y+ + GG+ EYV ++N K PLH D++
Sbjct: 203 LNGGVRIVFRDEREAAKGSDGSPHEEIYH---YEGGIREYVTYMNAGKDPLHPDIIYVNA 259
Query: 115 DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK 174
DG+ ++ ALQWC DAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLN+ KK K
Sbjct: 260 SKDGVQVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNTFAKKRGKRK 319
Query: 175 DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELH 234
D D +L+GE++REGLT ++SV+VP+PEFEGQTKT+LGN EVR +VD V E L E+LE H
Sbjct: 320 DTDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSVVGEALGEFLEFH 379
Query: 235 PDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVE 294
P V+D IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVE
Sbjct: 380 PQVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVE 439
Query: 295 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 354
GDSAGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI LGLG+KGE+F
Sbjct: 440 GDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITGLGLGIKGEEFN 499
Query: 355 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
ALRYH+I+I+TDADVDGAHIRTLLLTFFYRYQKTL + G IY+ PPLYKVERGK
Sbjct: 500 LSALRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKTLLEGGYIYIACPPLYKVERGKNHT 559
Query: 415 YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
YCY++ +LKK F A Y+IQRFKGLGEMMP QLWETT++P R +K++ IEDAAEA
Sbjct: 560 YCYNEQDLKKTLDGFGEKANYTIQRFKGLGEMMPKQLWETTMDPTTRTMKRVEIEDAAEA 619
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ +F+ LMG +V R+E I+ + ++ LDI
Sbjct: 620 DRIFTILMGDKVAPRREFIETHSAELDFAQLDI 652
>gi|87123248|ref|ZP_01079099.1| DNA gyrase, B subunit [Synechococcus sp. RS9917]
gi|86168968|gb|EAQ70224.1| DNA gyrase, B subunit [Synechococcus sp. RS9917]
Length = 705
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 292/500 (58%), Positives = 381/500 (76%), Gaps = 5/500 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG P+ +L PV+ K R GT + F PD ++FT I FD+ T++ R+RELA+
Sbjct: 146 HRQRFERGAPIGSLASAPQPVEEKGRTGTSVCFKPDLEIFTGGIVFDYATLSARLRELAY 205
Query: 63 LNPKLTIALRKEDS---DPEKNQYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I R E + E + + E YF+ GG++EYV ++N +K PLH +++ + D
Sbjct: 206 LNGGVRIVFRDERESALNAEGDAHEEVYFYEGGIKEYVAYMNAEKDPLHPEIIYVNAEKD 265
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G+ ++ ALQWC DAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLN+ KK K+ D
Sbjct: 266 GVQVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNAFAKKRGKRKESD 325
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT ++SV+VP PEFEGQTKT+LGN EVR +VD V E L++YLE +P V
Sbjct: 326 SNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEALSQYLEFNPSV 385
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+D IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDS
Sbjct: 386 IDMILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPAESEIYIVEGDS 445
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGEDF +
Sbjct: 446 AGGSAKQGRDRRFQAILPLRGKILNIEKTDDARIYKNTEIQALITALGLGIKGEDFDAKN 505
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+++I+TDADVDGAHIRTLLLTFFYRYQK L + G IY+ PPLYKVERGK YCY
Sbjct: 506 LRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVEGGFIYIACPPLYKVERGKNHTYCY 565
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ +L+ + F A Y+IQRFKGLGEMMP QLWETT++P R++K++ IEDA EA+ +
Sbjct: 566 NEQDLQTTLAGFGEKANYNIQRFKGLGEMMPKQLWETTMDPTTRLMKRVEIEDALEADRI 625
Query: 478 FSSLMGARVDTRKELIQNAA 497
F+ LMG +V R+E I+ A
Sbjct: 626 FTILMGDKVAPRREFIETTA 645
>gi|352095354|ref|ZP_08956457.1| DNA gyrase, B subunit [Synechococcus sp. WH 8016]
gi|351679365|gb|EHA62507.1| DNA gyrase, B subunit [Synechococcus sp. WH 8016]
Length = 655
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 290/510 (56%), Positives = 385/510 (75%), Gaps = 5/510 (0%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG + +L P + K GT + F PD ++FT I+FD++T++ R+RELA+
Sbjct: 146 HRQRFERGAAIGSLVSEPQPAEEKGVTGTSVCFKPDHEIFTVGIEFDYSTLSARLRELAY 205
Query: 63 LNPKLTIALRKEDS---DPEKNQYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I R E D E E YF+ GG++EYV ++N +K PLH +++ + D
Sbjct: 206 LNGGVRIVFRDERQAARDSEGQPREELYFYEGGIKEYVAYMNAEKDPLHPEIIYVNSEKD 265
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G++++ ALQWC DAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLN+ KK KD D
Sbjct: 266 GVSVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNTFAKKRGKRKDSD 325
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT ++SV+VP PEFEGQTKT+LGN EVR +VD V E L++YLE +P V
Sbjct: 326 SNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGESLSQYLEFNPGV 385
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+D IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCS+ P ESEI+IVEGDS
Sbjct: 386 IDMILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSTRDPSESEIYIVEGDS 445
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGEDF +
Sbjct: 446 AGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEDFDVKN 505
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+++I+TDADVDGAHIRTL+LTFFYRYQK L + G IY+ PPLYKVERGK YCY
Sbjct: 506 LRYHRVVIMTDADVDGAHIRTLILTFFYRYQKELVEGGYIYIACPPLYKVERGKNHTYCY 565
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ +L+ + F A Y+IQRFKGLGEMMP QLWETT++P RM+K++ ++DA EA+ +
Sbjct: 566 NEQQLQTTLAGFGEKANYNIQRFKGLGEMMPKQLWETTMDPSTRMMKRVEVQDALEADRI 625
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG +V R+E I+ + +++ LDI
Sbjct: 626 FTILMGDKVAPRREFIETHSADLDMASLDI 655
>gi|307154719|ref|YP_003890103.1| DNA gyrase subunit B [Cyanothece sp. PCC 7822]
gi|306984947|gb|ADN16828.1| DNA gyrase, B subunit [Cyanothece sp. PCC 7822]
Length = 640
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 298/506 (58%), Positives = 386/506 (76%), Gaps = 6/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG PVT+L ++ GT + F PD Q+F+ I+FD++T+AGR+RELA+
Sbjct: 140 FTQRYERGIPVTSLESQP---ETDHSTGTSVSFLPDTQIFSDGIEFDYSTLAGRLRELAY 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I D E+ + Y + GG++EYV ++ +K+PLH+ ++ + + +GI I
Sbjct: 197 LNAGVRITF--SDKRLEQPRVESYCYEGGIKEYVAYMCREKQPLHEEIIYVQGERNGIQI 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQW D Y+D +LG+AN+IRTIDGGTH+EG+KA LTRTLN++ +K +K+ + +L+
Sbjct: 255 EVALQWYIDTYNDNLLGFANNIRTIDGGTHLEGLKAVLTRTLNNVARKRNKIKENEPNLA 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE+VREGLT +ISV+VP PEFEGQTKT+LGN EVR +VD V E L EYLE HP + DSI
Sbjct: 315 GENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVLGEYLEFHPQIADSI 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ A KAA AA+RAR+LVR+KSVL SS LPGKLADCS P +SEIFIVEGDSAGGS
Sbjct: 375 IEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSERDPAKSEIFIVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRR QAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGE+F LRYH
Sbjct: 435 AKQGRDRRSQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLGIKGEEFDAAQLRYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDAD DG+HIRTLLLTFFYRYQ+++ D+G IY+ PPLYKVERGK +YCY++ E
Sbjct: 495 RIIIMTDADYDGSHIRTLLLTFFYRYQRSIVDQGYIYIACPPLYKVERGKNHRYCYNERE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ S P NA YSIQRFKGLGEMMP QLWETT+NPE R+LKQ+ IEDAA+A +F+ L
Sbjct: 555 LQQYISELPPNANYSIQRFKGLGEMMPQQLWETTMNPETRLLKQVEIEDAAKAEELFTIL 614
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RV R+E I+ + L LDI
Sbjct: 615 MGDRVLPRREFIETHGPRLKLTDLDI 640
>gi|428217864|ref|YP_007102329.1| DNA gyrase subunit B [Pseudanabaena sp. PCC 7367]
gi|427989646|gb|AFY69901.1| DNA gyrase subunit B [Pseudanabaena sp. PCC 7367]
Length = 646
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 292/506 (57%), Positives = 381/506 (75%), Gaps = 5/506 (0%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG P+ L V K ++GT++ F PD +F T I+F+ + + GR+RELA+
Sbjct: 145 HQQRYERGIPIGNL--EVSTAKDKQKRGTKVCFMPDTMIFATGIEFEFDILVGRLRELAY 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I + D E ++ Y + GG+ EYV ++ DK+ LH +++ + + + I I
Sbjct: 203 LNAGLKIEI--ADRRGETDKVETYQYDGGIREYVSYMTRDKEALHPEIIYIKGERNDIQI 260
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+QWC D+YSD + G+AN+IRT+DGGTH+EG+K LTRT+NS +K K +KD D +L+
Sbjct: 261 EVAMQWCIDSYSDNVFGFANNIRTVDGGTHLEGLKTVLTRTINSTARKLKKLKDSDSNLA 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE+VREGLT +ISV+VP PEFEGQTKT+LGN EVR VD V E L E++E +P V +I
Sbjct: 321 GENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGTVDSFVGEVLNEFIEFNPQVASTI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L + AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESE+FIVEGDSAGGS
Sbjct: 381 IEKALQSYNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESELFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGK+LN+ER D+ +YKN EIQ LI ++G+G++GE+F LRYH
Sbjct: 441 AKQGRDRHFQAILPLRGKVLNIERADDNKIYKNAEIQALITSIGMGIRGEEFDFSQLRYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KII+L DADVDGAHIRTLLLTFFYRYQ+ L ++G IY+G PPLYKVERG+ QYCY D E
Sbjct: 501 KIILLADADVDGAHIRTLLLTFFYRYQRELVEQGNIYIGCPPLYKVERGRSHQYCYSDRE 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ SSFP NA Y+IQRFKGLGEMMP+QLWETT+NPE R LKQ+ IEDAAEA +F+ L
Sbjct: 561 LQQILSSFPENANYTIQRFKGLGEMMPLQLWETTMNPETRTLKQITIEDAAEAERIFTIL 620
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG +V R+E I+ +N+ LDI
Sbjct: 621 MGDKVAPRREFIETYGPKLNITDLDI 646
>gi|124021870|ref|YP_001016177.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9303]
gi|123962156|gb|ABM76912.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9303]
Length = 655
Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust.
Identities = 290/510 (56%), Positives = 385/510 (75%), Gaps = 5/510 (0%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG + +L P K R GT + F PD+++FT I FD+ T++ R+RELA+
Sbjct: 146 HRQRFERGTAIGSLRSEAQPASEKGRTGTSVCFKPDEEIFTVGIVFDYATLSARLRELAY 205
Query: 63 LNPKLTIALRKEDS---DPEKNQYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I R E D E + E YF+ GG++EYV ++N +K LH +++ + D
Sbjct: 206 LNGGVRIVFRDERQPVLDAEGAPHEEVYFYEGGIKEYVTYMNAEKDALHPEIIYVNSEKD 265
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
+ ++ ALQWC DAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLN+ +K K+ D
Sbjct: 266 NVQVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNTFARKRGKRKEAD 325
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT ++SV+VP+PEFEGQTKT+LGN EVR +VD V E L++YLE +P V
Sbjct: 326 SNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEALSQYLEFNPAV 385
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+D IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDS
Sbjct: 386 IDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDS 445
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGE+F +
Sbjct: 446 AGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDAKN 505
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+++I+TDADVDGAHIRTL+LTFFYRYQK L + G IY+ PPLYKVERGK YCY
Sbjct: 506 LRYHRVVIMTDADVDGAHIRTLILTFFYRYQKELVEGGYIYIACPPLYKVERGKNHTYCY 565
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++A+L+ S FP A Y+IQRFKGLGEMMP QLWETT++P RM+K++ ++DA EA+ +
Sbjct: 566 NEADLQTTLSGFPEKANYTIQRFKGLGEMMPKQLWETTMDPSTRMMKRVEVQDALEADRI 625
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG +V R+E I+ + +++ LDI
Sbjct: 626 FTILMGDKVAPRREFIETHSAELDMAALDI 655
>gi|254430578|ref|ZP_05044281.1| DNA gyrase, B subunit [Cyanobium sp. PCC 7001]
gi|197625031|gb|EDY37590.1| DNA gyrase, B subunit [Cyanobium sp. PCC 7001]
Length = 652
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 296/511 (57%), Positives = 382/511 (74%), Gaps = 10/511 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG + +L K R GT + F PD ++FT I FD+ T++ R+RELA+
Sbjct: 146 HTQRFERGAAIGSLAS---APGEKGRTGTTVCFKPDSEIFTGGISFDYATLSSRLRELAY 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNE-----YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDV 116
LN + I R E +N E YF+ GG++EYV ++N +K PLH D++ +
Sbjct: 203 LNGGVRIVFRDERQSA-RNAAGEPHEDIYFYEGGIKEYVAYMNAEKDPLHPDIIYVNAEK 261
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
+G+ ++ ALQWC DAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLN+ KK KD
Sbjct: 262 EGVQVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNAFAKKRGKRKDA 321
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
D +L+GE++REGLT ++SV+VP PEFEGQTKT+LGN EVR +VD V E L E+LE +P
Sbjct: 322 DANLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDTLVGEALGEFLEFNPS 381
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
V+D IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGD
Sbjct: 382 VIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGD 441
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SAGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGEDF ++
Sbjct: 442 SAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEDFDEK 501
Query: 357 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 416
LRYH+I+I+TDADVDGAHIRTL+LTFF+RYQK L + G IY+ PPLYKVERGK YC
Sbjct: 502 NLRYHRIVIMTDADVDGAHIRTLILTFFFRYQKALVEGGYIYIACPPLYKVERGKNHTYC 561
Query: 417 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
Y++ +LKK SF A Y+IQRFKGLGEMMP QLWETT++P RM+K++ IEDA EA+
Sbjct: 562 YNEGDLKKTIESFGEKANYTIQRFKGLGEMMPQQLWETTMDPATRMMKRVEIEDALEADR 621
Query: 477 VFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+F+ LMG +V R+E I+ + ++L LDI
Sbjct: 622 IFTILMGDKVAPRREFIETHSAELDLAQLDI 652
>gi|427723858|ref|YP_007071135.1| DNA gyrase subunit B [Leptolyngbya sp. PCC 7376]
gi|427355578|gb|AFY38301.1| DNA gyrase subunit B [Leptolyngbya sp. PCC 7376]
Length = 640
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 293/507 (57%), Positives = 386/507 (76%), Gaps = 6/507 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E+ Q+Y RG L V + + GT + F PD ++FT FD+NT+AGR+RELA
Sbjct: 139 EHKQRYERGIAKGDL---VTAPATGHKSGTSVHFLPDAEIFTETTVFDYNTLAGRLRELA 195
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
+LN + I D E+ + N YF+ GG++EYV ++N +K LH+ ++ + + +
Sbjct: 196 YLNASVKIIFT--DHRAEEPRSNTYFYEGGIKEYVAYMNREKTALHEEIIYVSGEKNNVQ 253
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++ALQWC DAYSD +LG+AN+IRTIDGGTH+EG+KA LTRT+N++ +K +KD + +L
Sbjct: 254 VEVALQWCIDAYSDNLLGFANNIRTIDGGTHLEGLKAVLTRTMNTVARKRNKIKDNESNL 313
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
+GE++REGLT +ISV+VP PEFEGQTKT+LGN EVR +VD + E L EY E + +V+DS
Sbjct: 314 AGENIREGLTAVISVKVPEPEFEGQTKTKLGNSEVRGIVDSFMGEVLNEYFEFNLNVVDS 373
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
IL K++ A KAA AA+RAR+LVR+KSVL SS LPGKLADCS +SEI++VEGDSAGG
Sbjct: 374 ILEKAIQAFKAAEAARRARELVRRKSVLESSLLPGKLADCSERDAAKSEIYLVEGDSAGG 433
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR+FQAILPLRGKILN+E+ D+A +YKN EIQ+LI ALGLG+KGE+F E LRY
Sbjct: 434 SAKQGRDRQFQAILPLRGKILNIEKTDDARIYKNNEIQSLITALGLGIKGEEFNPEKLRY 493
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
H+++I+TDADVDGAHIRTLLLTFFYRYQ++L D+G IY+ PPLYK+ERGK+ YCY D
Sbjct: 494 HRVVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYIYIACPPLYKLERGKKHTYCYSDR 553
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+ + P+NA Y+IQRFKGLGEMMP QLW+TT+NPE R LK++ IEDAAEA+ +F+
Sbjct: 554 ELQSEIAELPTNAKYNIQRFKGLGEMMPQQLWDTTMNPESRTLKRVEIEDAAEADRIFTV 613
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMG RV R+E I+ A +N+ LDI
Sbjct: 614 LMGDRVAPRREFIETNAPKLNMLDLDI 640
>gi|33862394|ref|NP_893954.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9313]
gi|33640507|emb|CAE20296.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9313]
Length = 655
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 289/510 (56%), Positives = 384/510 (75%), Gaps = 5/510 (0%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG + +L P K R GT + F PD+++FT I FD+ T++ R+RELA+
Sbjct: 146 HRQRFERGTAIGSLRSEAQPASEKGRTGTSVCFKPDEEIFTVGIVFDYATLSTRLRELAY 205
Query: 63 LNPKLTIALRKEDS---DPEKNQYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I R E D E + E YF+ GG++EYV ++N +K LH +++ + D
Sbjct: 206 LNGGVRIVFRDERQPVLDAEGAPHEEVYFYEGGIKEYVTYMNAEKDALHPEIIYVNSEKD 265
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
+ ++ ALQWC DAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLN+ +K K+ D
Sbjct: 266 NVQVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNTFARKRGKRKEAD 325
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT ++SV+VP+PEFEGQTKT+LGN EVR +VD V E L++YLE +P V
Sbjct: 326 SNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEALSQYLEFNPAV 385
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+D IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDS
Sbjct: 386 IDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDS 445
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGE+F +
Sbjct: 446 AGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDSKN 505
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+++I+TDADVDGAHIRTL+LTFFYRYQK L + G IY+ PPLYKVERGK YCY
Sbjct: 506 LRYHRVVIMTDADVDGAHIRTLILTFFYRYQKELVEGGYIYIACPPLYKVERGKNHTYCY 565
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ +L+ S FP A Y+IQRFKGLGEMMP QLWETT++P RM+K++ ++DA EA+ +
Sbjct: 566 NEVDLQTTLSGFPEKANYTIQRFKGLGEMMPKQLWETTMDPSARMMKRVEVQDALEADRI 625
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG +V R+E I+ + +++ LDI
Sbjct: 626 FTILMGDKVAPRREFIETHSAELDMAALDI 655
>gi|33864631|ref|NP_896190.1| DNA gyrase subunit B [Synechococcus sp. WH 8102]
gi|33632154|emb|CAE06610.1| DNA gyrase subunit B [Synechococcus sp. WH 8102]
Length = 655
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 292/511 (57%), Positives = 382/511 (74%), Gaps = 7/511 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG + +L P GT + F PD ++FT I FD+ T++ R+RELA+
Sbjct: 146 HRQRFERGAAIGSLASEDQPASEAGETGTTVCFKPDIEIFTGGIVFDYATLSARLRELAY 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNE-----YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDV 116
LN + I R E + +N+ E YF+ GG++EYV ++NT+K LH D++ +
Sbjct: 206 LNGGVRIVFRDE-RESARNEVGEAHEETYFYEGGIKEYVAYMNTEKDALHPDIIYVNSEK 264
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
DG+ ++ ALQWCSDAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLN+ KK K+
Sbjct: 265 DGVQVEAALQWCSDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNAFAKKLGKRKES 324
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
D +L+GE++REGLT ++SV+VP PEFEGQTKT+LGN EVR +VD V E L+++LE +P
Sbjct: 325 DSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDNLVGEGLSQFLEFNPS 384
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
V+ IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGD
Sbjct: 385 VIGLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGD 444
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SAGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGEDF +
Sbjct: 445 SAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEDFDVK 504
Query: 357 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 416
LRYH+++I+TDADVDGAHIRTLLLTFFYRYQK L + G IY+ PPLYKVERGK YC
Sbjct: 505 NLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKALVEGGYIYIACPPLYKVERGKNHTYC 564
Query: 417 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
Y++ +L+K SF A Y+IQRFKGLGEMMP QLWETT++P R +K++ IEDA EA+
Sbjct: 565 YNEGDLQKTLQSFGEKANYTIQRFKGLGEMMPKQLWETTMDPTTRTMKRVEIEDALEADR 624
Query: 477 VFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+F+ LMG +V R+E I+ + +++ LDI
Sbjct: 625 IFTILMGDKVAPRREFIETHSAELDMTALDI 655
>gi|72383051|ref|YP_292406.1| DNA gyrase subunit B [Prochlorococcus marinus str. NATL2A]
gi|72002901|gb|AAZ58703.1| DNA gyrase subunit B [Prochlorococcus marinus str. NATL2A]
Length = 655
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 292/510 (57%), Positives = 387/510 (75%), Gaps = 5/510 (0%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG + +L L K+ GT + F PD Q+FT I F++ ++ R+RELA+
Sbjct: 146 HFQRFERGASIGSLKSENLSKSDKNLTGTTVCFKPDDQIFTDGISFEYGILSSRLRELAY 205
Query: 63 LNPKLTIALR---KEDSDPEKNQYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I R K+ +D + Y E YF+ GG++EYV+++ K LH +++ + D
Sbjct: 206 LNGGVRIVFRDERKQSNDSSQTPYEEVYFYEGGIKEYVEYMTKAKDSLHPEIIYVNSEKD 265
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G+ ++ A+QWC DAYSD++LG+AN+IRTIDGGTHIEG+K LTRTLNS KK KD D
Sbjct: 266 GVQVEAAMQWCVDAYSDSILGFANNIRTIDGGTHIEGLKTVLTRTLNSFAKKRGKRKDGD 325
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT ++SV+VP+PEFEGQTKT+LGN EVR +VD V L++YLE +P V
Sbjct: 326 SNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGTALSQYLEFNPGV 385
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+D IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDS
Sbjct: 386 IDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDS 445
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDR+FQAILPLRGKILN+E+ D+A MYKN EIQ+LI ALGLG+KGEDF+ +
Sbjct: 446 AGGSAKQGRDRKFQAILPLRGKILNIEKTDDAKMYKNTEIQSLITALGLGIKGEDFEVKN 505
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+++I+TDADVDGAHIRTLLLTFFYRYQK L + G IY+ PPLYKV RGK +YCY
Sbjct: 506 LRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKDLVEGGYIYIACPPLYKVTRGKNHKYCY 565
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++++++K +SF A Y+IQRFKGLGEMMP QLWETT++P RM+K++ IEDA EA+ +
Sbjct: 566 NESDMQKTLASFGEKANYTIQRFKGLGEMMPKQLWETTMDPTTRMMKRVEIEDALEADRI 625
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG +V R+E I+ + ++L LDI
Sbjct: 626 FTILMGDKVAPRREFIETHSVDLDLATLDI 655
>gi|443477130|ref|ZP_21066998.1| DNA gyrase subunit B [Pseudanabaena biceps PCC 7429]
gi|443017788|gb|ELS32155.1| DNA gyrase subunit B [Pseudanabaena biceps PCC 7429]
Length = 646
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 293/506 (57%), Positives = 381/506 (75%), Gaps = 4/506 (0%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG PVT L + R+GT++RF PD Q+FTT +F+++ +A R++ELA+
Sbjct: 144 YKQRYERGFPVTELIASK-SEEPIQRRGTQVRFKPDAQIFTTQTEFEYDILASRLKELAY 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I D + + + Y + GG+ EYV ++ +K+ +H D++ + D + +
Sbjct: 203 LNAGVKIEF--SDRRGTEVRTDIYCYEGGIREYVAYMTREKEAIHPDIIYVNGERDNVVV 260
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQWC D+Y+D +LG+AN+IRTIDGGTH+EG+K LTRT+N+ ++ K +K+ + +L+
Sbjct: 261 EVALQWCIDSYNDNVLGFANNIRTIDGGTHLEGLKTVLTRTINATARRLKKIKEGESNLA 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE+VREGLT +ISV+V +PEFEGQTKT+LGN EVR +VD V E L EYLE HP V SI
Sbjct: 321 GENVREGLTAVISVKVTDPEFEGQTKTKLGNTEVRGIVDSFVGEVLNEYLEFHPAVATSI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A AA AA+RAR+LVR+KS L SS+LPGKLADCSS P+ESEIFIVEGDSAGGS
Sbjct: 381 IEKALQAFNAAEAARRARELVRRKSALESSTLPGKLADCSSRDPKESEIFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR +QAILPLRGK+LN+ER D++ +YKN EIQ LI GLG+KGEDF + LRYH
Sbjct: 441 AKQGRDRHYQAILPLRGKVLNIERADDSKIYKNNEIQALITGCGLGIKGEDFNESQLRYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KII+L DADVDGAHIRTLLLTFFYRYQ+ L D G IY+G PPLYKVERGK QYCY D +
Sbjct: 501 KIILLADADVDGAHIRTLLLTFFYRYQRELLDRGYIYIGCPPLYKVERGKNAQYCYTDRD 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ + SFP+NA Y+IQRFKGLGEMMP QLWETT+NP R LK+L IEDAAEA+ +F+ L
Sbjct: 561 LQALLESFPANANYNIQRFKGLGEMMPQQLWETTMNPATRSLKRLTIEDAAEADRIFTIL 620
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG +V R+E I+ + + + LDI
Sbjct: 621 MGDKVAPRREFIETYGSKLAITELDI 646
>gi|424513000|emb|CCO66584.1| DNA gyrase subunit B [Bathycoccus prasinos]
Length = 811
Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust.
Identities = 290/505 (57%), Positives = 372/505 (73%), Gaps = 3/505 (0%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPV-DSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
EY Q +SRGK + L D + GTR+RF PD +F +FD N I R++EL
Sbjct: 306 EYFQTFSRGKTTSELQVSERKAKDGNPKTGTRVRFKPDNMIFQKVQEFDPNIIRARMKEL 365
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
AFLN + DS ++ + + + GL +Y+ LN+DK +H+ + + + +G+
Sbjct: 366 AFLNSNAELRFTSVDSKTKEMKEDVLKYPNGLTDYIVDLNSDKNAIHEPITLKTEHEGVK 425
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
++L LQW D YSDT+LGYANSIRTIDGG+HI+G+K SLTR N+ +K+K +K +D +L
Sbjct: 426 VELCLQWTHDDYSDTILGYANSIRTIDGGSHIDGLKFSLTRAFNTAARKAKLLKAEDTNL 485
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
G+H+REGL+ +I+V VP PEFEGQTKTRLGN E RK V+ + E TEYLE HP+VL S
Sbjct: 486 GGDHIREGLSAVIAVWVPQPEFEGQTKTRLGNSEARKAVEAMISEKFTEYLEFHPEVLSS 545
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
+ K+ +ALKA+ AAKRARDLVR+KSVLRSSSLPGKL+DC+++ +E+EIF+VEGDSAGG
Sbjct: 546 VFKKAQAALKASEAAKRARDLVRRKSVLRSSSLPGKLSDCANSNADETEIFLVEGDSAGG 605
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
S KQGRDR FQA+LPLRGKILNVERKDE AMYKN EIQ+++ ALGLGV GEDF LRY
Sbjct: 606 SCKQGRDRAFQAVLPLRGKILNVERKDEQAMYKNTEIQSMVTALGLGVMGEDFNVNNLRY 665
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ-VQYCYDD 419
KIIILTDADVDGAHIRTLLLTF YRYQK LF++G IYV VPPLYKVE GK+ V+YCYD+
Sbjct: 666 SKIIILTDADVDGAHIRTLLLTFLYRYQKALFEQGHIYVAVPPLYKVESGKKNVKYCYDE 725
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
ELKK + N ++QRFKGLGEMMP QLW+TTL+P+ R L++L ++DAA N FS
Sbjct: 726 LELKKHLDTLGDNQPKNLQRFKGLGEMMPQQLWDTTLDPKTRTLRRLTVDDAAMVNHTFS 785
Query: 480 SLMGARVDTRKELIQN-AANLVNLD 503
LM +V R++ I++ +L+NLD
Sbjct: 786 LLMSDKVGPRRQFIEDEGPDLMNLD 810
>gi|78183717|ref|YP_376151.1| DNA gyrase subunit B [Synechococcus sp. CC9902]
gi|78168011|gb|ABB25108.1| DNA gyrase subunit B [Synechococcus sp. CC9902]
Length = 655
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 288/510 (56%), Positives = 382/510 (74%), Gaps = 5/510 (0%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG + TL P + GT + F PD Q+FT I FD+ T++ R+RELA+
Sbjct: 146 HRQRFERGAAIGTLLSESQPEAEQGETGTTVCFLPDTQIFTGGIVFDYATLSARLRELAY 205
Query: 63 LNPKLTIALRKED----SDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I R E SD YF+ GG++EYV ++N K LH D++ + D
Sbjct: 206 LNGGVQIVFRDERESSLSDAGDPHEEIYFYEGGIKEYVAYMNKAKDALHPDIIYVNSEKD 265
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G+ ++ ALQWC+DAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLN+ KK K+ D
Sbjct: 266 GVQVEAALQWCADAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNAFAKKLGKRKEAD 325
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT ++SV+VP PEFEGQTKT+LGN EVR +VD V E L+++LE +P V
Sbjct: 326 SNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDNLVGESLSQFLEFNPSV 385
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+ IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDS
Sbjct: 386 ISLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDS 445
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+E+ D++ +YKN EIQ LI ALGLG+KGE+F +++
Sbjct: 446 AGGSAKQGRDRRFQAILPLRGKILNIEKTDDSKIYKNTEIQALITALGLGIKGEEFDQKS 505
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+++I+TDADVDGAHIRTL+LTFFYRY++ L + G IY+ PPLYKVERGK YCY
Sbjct: 506 LRYHRVVIMTDADVDGAHIRTLILTFFYRYKRELVEGGYIYIACPPLYKVERGKNHTYCY 565
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++++L+K F NA Y+IQRFKGLGEMMP QLWETT++P RM+K++ IEDA EA+ +
Sbjct: 566 NESDLQKTLKGFGENAKYTIQRFKGLGEMMPKQLWETTMDPSTRMMKRIEIEDALEADRI 625
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG +V R+E I+ + +++ LDI
Sbjct: 626 FTILMGDKVAPRREFIETHSKELDMAALDI 655
>gi|37522075|ref|NP_925452.1| DNA gyrase subunit B [Gloeobacter violaceus PCC 7421]
gi|35213074|dbj|BAC90447.1| DNA gyrase subunit B [Gloeobacter violaceus PCC 7421]
Length = 644
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 287/511 (56%), Positives = 372/511 (72%), Gaps = 10/511 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y Q++ RG P L + DS+ R+GT I F PD ++FTT + FD +T+ R RELA
Sbjct: 139 QYIQRFHRGIPEGGL---AVSSDSQKRRGTMISFLPDPEIFTTGVDFDFDTLLSRFRELA 195
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
FLN + R D E + Y + GG+ EYV+++ +K LH D++ ++ DG++
Sbjct: 196 FLNAG--VEFRFSDLRGETERTESYIYEGGIREYVKYMTREKAALHPDIIFINQERDGVS 253
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
++ ALQW +D Y+D +LG+AN+IRTIDGGTH+EG+KA LTRT NS +K+ +KD D +L
Sbjct: 254 VECALQWSTDVYNDNVLGFANNIRTIDGGTHLEGLKAVLTRTFNSFARKANKLKDGDKNL 313
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
+GEHVREGLT ++SV+VPNPEFEGQTKT+LGNPEVR +VD + E LTEYLE HPDV+ S
Sbjct: 314 TGEHVREGLTAVLSVKVPNPEFEGQTKTKLGNPEVRGIVDGVISEKLTEYLEFHPDVVAS 373
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
IL K+L +++A AA++ARDLVR+KS L SS+LPGKLADC S P ESE+F+VEGDSAGG
Sbjct: 374 ILEKALQSMQAEEAARKARDLVRRKSALESSTLPGKLADCQSRDPAESEVFLVEGDSAGG 433
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDRRFQAILPLRGKILN+ER D+ +Y N EIQ +I LGLG+K E+F LRY
Sbjct: 434 SAKQGRDRRFQAILPLRGKILNIERADDRKIYGNNEIQAMITGLGLGLKTEEFDVGRLRY 493
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE----RGKQVQYC 416
H+III+TDADVDGAHIRTLLLTFFYRY++ L ++G IY+ PPLYK+ R V+YC
Sbjct: 494 HRIIIMTDADVDGAHIRTLLLTFFYRYKRDLVEQGYIYIAQPPLYKISIGGGRNIDVRYC 553
Query: 417 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
Y + E + + N Y +QRFKGLGEM QLWETT+NPE R L+Q+ IEDAAEA+
Sbjct: 554 YSEQEKEAILRGLRENQKYELQRFKGLGEMQADQLWETTMNPETRTLRQVTIEDAAEADR 613
Query: 477 VFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
VF+ LMG RV+ R+E I+ + + LDI
Sbjct: 614 VFNILMGDRVEPRREFIETYGPRLQMADLDI 644
>gi|78211642|ref|YP_380421.1| DNA gyrase subunit B [Synechococcus sp. CC9605]
gi|78196101|gb|ABB33866.1| DNA gyrase, B subunit [Synechococcus sp. CC9605]
Length = 655
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 292/510 (57%), Positives = 379/510 (74%), Gaps = 5/510 (0%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG + L P GT + F PD ++FT I FD+ T++ R+RELA+
Sbjct: 146 HRQRFERGAAIGVLASESQPAAESGETGTTVCFKPDLEIFTGGIVFDYATLSARLRELAY 205
Query: 63 LNPKLTIALRKEDS---DPEKNQYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I R E D E N + E YF+ GG++EYV ++N +K LH D++ + D
Sbjct: 206 LNGGVRIVFRDERESARDGEGNPHEETYFYEGGIKEYVAYMNKEKDALHPDIIYVNSEKD 265
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G+ ++ ALQWCSDAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLN+ KK K+ D
Sbjct: 266 GVQVEAALQWCSDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNAFAKKLGKRKESD 325
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT ++SV+VP PEFEGQTKT+LGN EVR +VD V E L+++LE +P V
Sbjct: 326 SNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDNLVGEALSQFLEFNPSV 385
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+ IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDS
Sbjct: 386 IGLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPGESEIYIVEGDS 445
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGEDF +
Sbjct: 446 AGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEDFDVKN 505
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+++I+TDADVDGAHIRTLLLTFFYRYQK L + G IY+ PPLYKVERGK YCY
Sbjct: 506 LRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVEGGYIYIACPPLYKVERGKNHTYCY 565
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ +L+K F A Y+IQRFKGLGEMMP QLWETT++P R +K++ IEDA EA+ +
Sbjct: 566 NEGDLQKTLEGFGEKANYTIQRFKGLGEMMPKQLWETTMDPTTRTMKRVEIEDALEADRI 625
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG +V R+E I+ + +++ LDI
Sbjct: 626 FTILMGDKVAPRREFIETHSAELDMAALDI 655
>gi|124026793|ref|YP_001015908.1| DNA gyrase subunit B [Prochlorococcus marinus str. NATL1A]
gi|123961861|gb|ABM76644.1| DNA gyrase, subunit B [Prochlorococcus marinus str. NATL1A]
Length = 655
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 290/510 (56%), Positives = 388/510 (76%), Gaps = 5/510 (0%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG + +L L K+ GT + F PD Q+FT I F++ ++ R+RELA+
Sbjct: 146 HFQRFERGASIGSLKSENLSKSDKNLTGTTVCFKPDDQIFTDGISFEYGILSSRLRELAY 205
Query: 63 LNPKLTIALR---KEDSDPEKNQYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I R K+ +D + + E YF+ GG++EYV+++ K LH +++ + D
Sbjct: 206 LNGGVRIVFRDERKQSNDSSQTPHEEVYFYEGGIKEYVEYMTKAKDSLHPEIIYVNSEKD 265
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G+ ++ A+QWC DAYSD++LG+AN+IRTIDGGTHIEG+K LTRTLNS KK KD D
Sbjct: 266 GVQVEAAMQWCVDAYSDSILGFANNIRTIDGGTHIEGLKTVLTRTLNSFAKKRGKRKDGD 325
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT ++SV+VP+PEFEGQTKT+LGN EVR +VD V L++YLE +P+V
Sbjct: 326 SNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGTSLSQYLEFNPNV 385
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+D IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDS
Sbjct: 386 IDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDS 445
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDR+FQAILPLRGKILN+E+ D+A MYKN EIQ+LI ALGLG+KGEDF+ +
Sbjct: 446 AGGSAKQGRDRKFQAILPLRGKILNIEKTDDAKMYKNTEIQSLITALGLGIKGEDFEVKN 505
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+++I+TDADVDGAHIRTLLLTFFYRYQK L + G IY+ PPLYKV RGK +YCY
Sbjct: 506 LRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKDLVEGGYIYIACPPLYKVTRGKNHKYCY 565
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++++++K +SF A Y+IQRFKGLGEMMP QLW+TT++P RM+K++ IEDA EA+ +
Sbjct: 566 NESDMQKTLASFGEKANYTIQRFKGLGEMMPKQLWDTTMDPTTRMMKRVEIEDALEADRI 625
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG +V R+E I+ + ++L LDI
Sbjct: 626 FTILMGDKVAPRREFIETHSVDLDLATLDI 655
>gi|123967056|ref|YP_001012137.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9515]
gi|123201422|gb|ABM73030.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9515]
Length = 655
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 287/510 (56%), Positives = 380/510 (74%), Gaps = 6/510 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKD-RQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
E+ Q++ RG +T +K R+GT I F PD +FT I+FD+ ++ R+REL
Sbjct: 148 EFTQRFERG--ITKGELKTQKQQNKSLRKGTIICFKPDTTIFTDGIEFDYALLSSRLREL 205
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNE--YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
A+LN + I E + E Y + GG++EYVQ++N +K+ +H +++ D
Sbjct: 206 AYLNGGVKIIFIDERQKLPDGSFKEEIYLYDGGIKEYVQYINKEKESIHSEIIYVDSQKD 265
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
+ ++ ALQWCSD YSD +LG+AN+IRTIDGGTHIEG+K LTRT N++ KK K+ D
Sbjct: 266 NVYVEAALQWCSDVYSDNILGFANNIRTIDGGTHIEGLKTVLTRTFNAIAKKRGKRKEVD 325
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+LSGE++REGLT ++SV+VP+PEFEGQTKT+LGN EVR +VD + E LT+Y+E +P+V
Sbjct: 326 KNLSGENIREGLTVVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSLIGESLTKYMEFNPNV 385
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
D IL K++ + AA AAKRARDLVR+KSVL SS+LPGKLADCSS P SEI+IVEGDS
Sbjct: 386 FDLILEKAIQSFNAAEAAKRARDLVRRKSVLESSTLPGKLADCSSRDPSGSEIYIVEGDS 445
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDR+FQAILPLRGKILN+E+ D+ +YKN EIQ+LI ALGLG+KGE+F +
Sbjct: 446 AGGSAKQGRDRKFQAILPLRGKILNIEKTDDTKIYKNTEIQSLITALGLGIKGEEFDVNS 505
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+++I+TDADVDGAHIRTLLLTFFYRYQ+ L ++G IY+ PPLYKVERGK +YCY
Sbjct: 506 LRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVEKGFIYIACPPLYKVERGKNHKYCY 565
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ +LKK F A Y+IQRFKGLGEMMP QLW+TT+NPE RM+K++ IEDA EA+ +
Sbjct: 566 NEGQLKKTIEDFGEKANYNIQRFKGLGEMMPKQLWDTTMNPETRMMKKVEIEDALEADRI 625
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG +V R+E I+ + +++ LDI
Sbjct: 626 FNILMGDKVAPRREFIETHSANLDIATLDI 655
>gi|443326004|ref|ZP_21054673.1| DNA gyrase, B subunit [Xenococcus sp. PCC 7305]
gi|442794385|gb|ELS03803.1| DNA gyrase, B subunit [Xenococcus sp. PCC 7305]
Length = 644
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 287/504 (56%), Positives = 386/504 (76%), Gaps = 4/504 (0%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
Q+Y +GK L D+ + GT + F+PD +FT I+F++N +AGR++ELA+LN
Sbjct: 144 QRYEKGKAQGVLQSSP-NADNPTQTGTSVHFFPDATIFTDTIEFEYNVLAGRLKELAYLN 202
Query: 65 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDL 123
+ I ++ + E Q Y + GG++EYV ++ +K+ LH D++ ++ +G+T+++
Sbjct: 203 AGVKITF-TDNREAEPRQ-ELYCYEGGIKEYVAYMTREKQALHEDILYVAEEKNGVTVEV 260
Query: 124 ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGE 183
ALQWC DAYSD +LG+AN+IRTIDGGTH+EG+K LTRT+N+ +K +KD D +L GE
Sbjct: 261 ALQWCIDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNNFARKRNKLKDSDKNLGGE 320
Query: 184 HVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILS 243
++REGLT +ISV+VP PEFEGQTKT+LGN EVR +VD V E L +YLE + V D+I+
Sbjct: 321 NIREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVLKDYLEFNLGVGDAIIE 380
Query: 244 KSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAK 303
K++ A KAA AA+ AR+LVR+KSVL S++LPGKLADCSS P ESEI++VEGDSAGGSAK
Sbjct: 381 KAVQAFKAAEAARHARELVRRKSVLESTTLPGKLADCSSRDPAESEIYLVEGDSAGGSAK 440
Query: 304 QGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKI 363
QGRDR+FQAILPLRGKILN+E+ D+A +YKN EIQ++I ALGLG+KGE+F E LRYH+I
Sbjct: 441 QGRDRQFQAILPLRGKILNIEKTDDAKIYKNNEIQSMITALGLGIKGEEFNPEQLRYHRI 500
Query: 364 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELK 423
+I+TDADVDGAHIRTLLLTFFYRYQ+ + D+G +Y+ PPLYK+ERG+ YCY D +L+
Sbjct: 501 VIMTDADVDGAHIRTLLLTFFYRYQREMVDQGYVYIACPPLYKLERGRNHYYCYSDRDLQ 560
Query: 424 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 483
+ + P+NA Y+IQRFKGLGEMMP QLW+TT+NPE RM+K++ IEDAAEA+ +F+ LMG
Sbjct: 561 QKIAELPANANYTIQRFKGLGEMMPQQLWDTTMNPETRMMKRVEIEDAAEADRIFTVLMG 620
Query: 484 ARVDTRKELIQNAANLVNLDHLDI 507
RV R+E I+ A +NL LDI
Sbjct: 621 DRVAPRREFIETNAPKLNLMDLDI 644
>gi|33862190|ref|NP_893751.1| DNA gyrase subunit B [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|33634408|emb|CAE20093.1| DNA gyrase, subunit B [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
Length = 655
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 279/483 (57%), Positives = 370/483 (76%), Gaps = 3/483 (0%)
Query: 28 RQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNE-- 85
R+GT I F PD +FT I+FD+ ++ R+RELA+LN + I R E + + E
Sbjct: 173 RKGTTICFKPDTSIFTDGIKFDYALLSSRLRELAYLNGGVKIIFRDERQNLSDGSFKEEI 232
Query: 86 YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIR 144
Y + GG++EYV+++N +K+ +H +V+ D + ++ ALQWCSD YSD +LG+AN+IR
Sbjct: 233 YLYDGGIKEYVEYINKEKESIHSEVIYVDSQKDNVYVEAALQWCSDVYSDNILGFANNIR 292
Query: 145 TIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEG 204
TIDGGTHI+G+K LTRT N++ KK K+ D +LSGE++REGLT ++SV+VP PEFEG
Sbjct: 293 TIDGGTHIDGLKTVLTRTFNAIAKKRGKRKEVDKNLSGENIREGLTVVLSVKVPEPEFEG 352
Query: 205 QTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQ 264
QTKT+LGN EVR +VD + E L +Y+E +P+V D IL K++ + AA AAKRARDLVR+
Sbjct: 353 QTKTKLGNTEVRGIVDSLIGESLIKYMEFNPNVFDLILEKAIQSFNAAEAAKRARDLVRR 412
Query: 265 KSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVE 324
KSVL SS+LPGKLADCSS P +EI+IVEGDSAGGSAKQGRDRRFQAILPLRGKILN+E
Sbjct: 413 KSVLESSTLPGKLADCSSRDPSGAEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIE 472
Query: 325 RKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFF 384
+ D+A +YKN EIQ+LI ALGLG+KGE+F +LRYH+++I+TDADVDGAHIRTLLLTFF
Sbjct: 473 KTDDAKIYKNTEIQSLITALGLGIKGEEFNVNSLRYHRVVIMTDADVDGAHIRTLLLTFF 532
Query: 385 YRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLG 444
YRYQ+ L ++G IY+ PPLYKVERGK +YCY++ +LK+ F A Y+IQRFKGLG
Sbjct: 533 YRYQRDLVEKGFIYIACPPLYKVERGKNHKYCYNENQLKQTIEDFGEKANYNIQRFKGLG 592
Query: 445 EMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDH 504
EMMP QLW+TT+NP+ RM+K++ IEDA EA+ +F+ LMG +V R+E I+ + +++
Sbjct: 593 EMMPKQLWDTTMNPQTRMMKRVEIEDALEADRIFNILMGDKVAPRREFIETHSANLDMAT 652
Query: 505 LDI 507
LDI
Sbjct: 653 LDI 655
>gi|116071704|ref|ZP_01468972.1| DNA topoisomerase IV subunit B [Synechococcus sp. BL107]
gi|116065327|gb|EAU71085.1| DNA topoisomerase IV subunit B [Synechococcus sp. BL107]
Length = 655
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 287/510 (56%), Positives = 381/510 (74%), Gaps = 5/510 (0%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG + +L + GT + F PD Q+FT I FD+ T++ R+RELA+
Sbjct: 146 HRQRFERGAAIGSLLSESQSEAEQGETGTTVCFLPDLQIFTGGIVFDYATLSARLRELAY 205
Query: 63 LNPKLTIALRKED----SDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I R E SD YF+ GG++EYV ++N K LH D++ + D
Sbjct: 206 LNGGVQIVFRDEREASLSDAGDPHEEIYFYEGGIKEYVAYMNKAKDALHPDIIYVNSEKD 265
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G+ ++ ALQWC+DAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLN+ KK KD D
Sbjct: 266 GVQVEAALQWCADAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNAFAKKLGKRKDAD 325
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT ++SV+VP PEFEGQTKT+LGN EVR +VD V E L+++LE +P V
Sbjct: 326 SNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDNLVGEALSQFLEFNPSV 385
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+ IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDS
Sbjct: 386 ISLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDS 445
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+E+ D++ +YKN EIQ LI ALGLG+KGE+F +++
Sbjct: 446 AGGSAKQGRDRRFQAILPLRGKILNIEKTDDSKIYKNTEIQALITALGLGIKGEEFDQKS 505
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+++I+TDADVDGAHIRTL+LTFFYRY++ L + G IY+ PPLYKVERGK YCY
Sbjct: 506 LRYHRVVIMTDADVDGAHIRTLILTFFYRYKRELVEGGYIYIACPPLYKVERGKNHTYCY 565
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++++L+K F NA Y+IQRFKGLGEMMP QLWETT++P RM+K++ IEDA EA+ +
Sbjct: 566 NESDLQKTLKGFGENAKYTIQRFKGLGEMMPKQLWETTMDPSTRMMKRIEIEDALEADRI 625
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG +V R+E I+ + +++ LDI
Sbjct: 626 FTILMGDKVAPRREFIETHSKELDMAALDI 655
>gi|260436552|ref|ZP_05790522.1| DNA gyrase, B subunit [Synechococcus sp. WH 8109]
gi|260414426|gb|EEX07722.1| DNA gyrase, B subunit [Synechococcus sp. WH 8109]
Length = 655
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 290/510 (56%), Positives = 378/510 (74%), Gaps = 5/510 (0%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG + L P GT + F PD ++FT I FD+ T++ R+RELA+
Sbjct: 146 HRQRFERGAAIGELASESQPAAESGETGTTVCFKPDLEIFTGGIVFDYATLSARLRELAY 205
Query: 63 LNPKLTIALRKEDS---DPEKNQYNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVD 117
LN + I R E D E + E YF+ GG++EYV ++N +K LH +++ + D
Sbjct: 206 LNGGVRIVFRDERESARDEEGKPHEETYFYEGGIKEYVAYMNKEKDALHPEIIYVNSEKD 265
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G+ ++ ALQWCSDAYSD++LG+AN+IRT+DGGTHIEG+K LTRTLN+ KK K+ D
Sbjct: 266 GVQVEAALQWCSDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNAFAKKLGKRKESD 325
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+L+GE++REGLT ++SV+VP PEFEGQTKT+LGN EVR +VD V E L+++LE +P V
Sbjct: 326 SNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDNLVGEALSQFLEFNPSV 385
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+ IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDS
Sbjct: 386 ISLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPGESEIYIVEGDS 445
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGEDF +
Sbjct: 446 AGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEDFDVKN 505
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYH+++I+TDADVDGAHIRTLLLTFFYRYQK L + G IY+ PPLYKVERGK YCY
Sbjct: 506 LRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVEGGYIYIACPPLYKVERGKNHTYCY 565
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ +L+K F A Y+IQRFKGLGEMMP QLWETT++P R +K++ IEDA EA+ +
Sbjct: 566 NEGDLQKTLEGFGEKANYTIQRFKGLGEMMPKQLWETTMDPTTRTMKRVEIEDAIEADRI 625
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F+ LMG +V R+E I+ + +++ LDI
Sbjct: 626 FTILMGDKVAPRREFIETHSAELDMAALDI 655
>gi|284928768|ref|YP_003421290.1| DNA gyrase subunit B [cyanobacterium UCYN-A]
gi|284809227|gb|ADB94932.1| DNA gyrase subunit B [cyanobacterium UCYN-A]
Length = 642
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 291/508 (57%), Positives = 387/508 (76%), Gaps = 10/508 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y G V+ L D++ +GT + F PDKQ+FT+ FD+ T++ R+RELA+
Sbjct: 142 YTQRYECGVAVSELKKEP---DTEHPKGTSVSFLPDKQIFTSDTNFDYATLSARLRELAY 198
Query: 63 LNPKLTIALRKEDSDPEKNQ-YNE-YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGI 119
LN ++TI +D K + Y+E YF+ GGL EYV ++ +K+ LH D++ + G+
Sbjct: 199 LNSQITIKF----TDYRKQEPYSETYFYEGGLREYVTYMCRNKEALHKDIIYICGEKKGV 254
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++ AL WC DAYSD +LG+AN+IRTIDGGTH+EG+K LTRT+N++ +K +K+ + +
Sbjct: 255 QVEAALLWCIDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNNVARKRNKIKENEPN 314
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSGE+VREGLT I+SV+VP PEFEGQTKT+LGN EVR +VD V E L EYLE +P V D
Sbjct: 315 LSGENVREGLTGIVSVKVPEPEFEGQTKTKLGNTEVRGIVDLLVGEVLGEYLEFNPHVGD 374
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K++ A KAA AA+RARDLVR+KSVL SS LPGKLADCS+ P E+EIF+VEGDSAG
Sbjct: 375 IIIEKAVQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCSTRDPAEAEIFLVEGDSAG 434
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDRRFQAILPLRGKI+N+E+ D+A +YKN EIQ+LI ALGLG+KGE+F LR
Sbjct: 435 GSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEIQSLITALGLGIKGEEFDVSQLR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YH+I+I+TDADVDGAHIRTL+LTFFYRYQ+ L ++G IY+ PPLYK+ERG+ YCY++
Sbjct: 495 YHRIVIMTDADVDGAHIRTLILTFFYRYQRLLIEQGFIYIACPPLYKIERGRNHSYCYNE 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
+L+ + P+NA Y+IQRFKGLGEMMPVQLW TT+NPE R +K++ I+DA EA+ +F+
Sbjct: 555 QQLQDNIKALPANAKYTIQRFKGLGEMMPVQLWNTTMNPETRSMKRVEIDDAVEADRIFT 614
Query: 480 SLMGARVDTRKELIQNAANLVNLDHLDI 507
LMG +V R++ I+N + +NL+ LDI
Sbjct: 615 ILMGDKVAPRRQFIENYGSKLNLNDLDI 642
>gi|86606189|ref|YP_474952.1| DNA gyrase subunit B [Synechococcus sp. JA-3-3Ab]
gi|86554731|gb|ABC99689.1| DNA gyrase, B subunit [Synechococcus sp. JA-3-3Ab]
Length = 642
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 286/507 (56%), Positives = 383/507 (75%), Gaps = 6/507 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++ RG V +L P ++ R+GT +RF PD+ +F +FD++ +A R+RELA+
Sbjct: 140 YFQRFERGAVVGSLQSEPQPAGAQ-RRGTEVRFKPDELIFPER-EFDYSLLAARLRELAY 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I DP + Y FAGG++EYV ++N +K P+H D++ R + DG+ +
Sbjct: 198 LNAGLKIIFSDLRRDPPHREV--YQFAGGIKEYVAFINHEKTPIHPDIIYVRGERDGVEV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+ ALQWC+D Y+DT++G+AN+IRT +GGTH+EG+K +LT T+NS +K +KD D +L+
Sbjct: 256 EAALQWCADVYTDTLIGFANNIRTTEGGTHLEGLKTALTLTINSQARKLNKLKDSDSNLA 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE+VREGLT I++V+VPNPEFEGQTKT+LGN EVR +V V E LTEYLE +P+V I
Sbjct: 316 GENVREGLTAILAVKVPNPEFEGQTKTKLGNTEVRGIVQTLVSEALTEYLEFNPNVARGI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ + AA AA+RAR+LVR+KS L SS+LPGKLADCS P ESE+++VEGDSAGGS
Sbjct: 376 VEKAIQSFNAAEAARRARELVRRKSALESSTLPGKLADCSCRDPAESEVYLVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQA+LPLRGKILN+E+ D A +YKN EIQ +I ALGLGVKGE+F LRYH
Sbjct: 436 AKQGRDRQFQAVLPLRGKILNIEKADPAKIYKNAEIQAMITALGLGVKGEEFDPSQLRYH 495
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK-QVQYCYDDA 420
+II++TDADVDG+HIRTLLLTFFYRYQK L ++G +Y+ PPLYK+E G+ V+YCY++A
Sbjct: 496 RIILMTDADVDGSHIRTLLLTFFYRYQKALLEQGYVYIACPPLYKIEWGRNNVRYCYNEA 555
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
E ++V S P+N Y+IQRFKGLGEMMP QLWETT+NP R+LKQ+ IEDAAEA+ +F+
Sbjct: 556 EKEQVLRSLPANTKYTIQRFKGLGEMMPEQLWETTMNPATRVLKQITIEDAAEADRIFTI 615
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMG V R+E I+ + ++L LDI
Sbjct: 616 LMGDAVGPRREFIEAHSAQLDLAALDI 642
>gi|255073667|ref|XP_002500508.1| predicted protein [Micromonas sp. RCC299]
gi|226515771|gb|ACO61766.1| predicted protein [Micromonas sp. RCC299]
Length = 703
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 297/505 (58%), Positives = 376/505 (74%), Gaps = 13/505 (2%)
Query: 2 EYHQKYSRGK---PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIR 58
EY Q +SRG P+T + V V K +GTR+RF PD +F FD N I R++
Sbjct: 191 EYRQSFSRGAALAPMTEGSQDVANVGKK--KGTRVRFKPDPSIFKERQDFDPNIILARMK 248
Query: 59 ELAFLNPKLTIALRKEDSDPEKNQ--YNEYF-FAGGLEEYVQWLNTDKKPLHDVVGFRKD 115
ELAFLN T ++ D +K + Y E F GGL++YV LN +PLH+ + FR +
Sbjct: 249 ELAFLNSTATDEASMDEGDVKKTEEYYEEVLSFPGGLKDYVVDLNEGAEPLHEPITFRAE 308
Query: 116 VDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKD 175
VDG+ ++ ALQW +AY+DT+LGYANSIRT DGGTH++G+K SLTR +N+ +K+K +K+
Sbjct: 309 VDGVQVEGALQWTKEAYTDTLLGYANSIRTSDGGTHLDGLKQSLTRAVNTQARKAKLLKE 368
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
D +L GEH+REGL+ +I+V VP PEFEGQTKTRLGNPEVRKVV+ + E ++E+LE +P
Sbjct: 369 ADANLGGEHIREGLSAVIAVWVPQPEFEGQTKTRLGNPEVRKVVESVIGEQVSEHLEFYP 428
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
+ L SI SK+ A KAA AAKRAR+LVR+KSVLRS SLPGKL+DCS + PE +EIF+VEG
Sbjct: 429 NTLGSIFSKASQAQKAAEAAKRARELVRRKSVLRSGSLPGKLSDCSVSDPESTEIFLVEG 488
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK 355
DSAGGSAKQGRDRRFQA+LPLRGKILNVERKDEA+MYKN EI +++ ALGLG+KGE F +
Sbjct: 489 DSAGGSAKQGRDRRFQAVLPLRGKILNVERKDEASMYKNTEISSMVTALGLGLKGEPFDE 548
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ- 414
LRY KI+ILTDADVDGAHIRTLLLTF +RYQ+ LF++G +YV VPPLYKVE G+ +
Sbjct: 549 SQLRYSKIVILTDADVDGAHIRTLLLTFLFRYQRGLFEQGKVYVAVPPLYKVESGRAGKN 608
Query: 415 ----YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED 470
YCYD+A+L+ ++ P A SIQRFKGLGEMMP QLW TTLNPE R+LK+L ++D
Sbjct: 609 NPPTYCYDEAQLQAHLATLPEGASRSIQRFKGLGEMMPEQLWSTTLNPETRLLKRLTVDD 668
Query: 471 AAEANVVFSSLMGARVDTRKELIQN 495
AA AN F LM +V R+E I+
Sbjct: 669 AAMANKTFQLLMSDKVAPRREFIET 693
>gi|78780112|ref|YP_398224.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9312]
gi|78713611|gb|ABB50788.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9312]
Length = 655
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 281/509 (55%), Positives = 384/509 (75%), Gaps = 4/509 (0%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E++Q++ +G L ++GT I F PDK +F+ I+F++ ++ R+RELA
Sbjct: 148 EFNQRFEKGVSQNVLQSKKQ-TKKPFKKGTTICFKPDKTIFSGGIEFEYALLSSRLRELA 206
Query: 62 FLNPKLTIALRKEDSDPEKNQYNE--YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDG 118
+LN + I R E + + E Y + GG++EYVQ++N +K+ +H D++ +
Sbjct: 207 YLNGGVKIVFRDERNKLSDGSFKEEIYLYQGGIKEYVQYMNAEKEAIHPDIIYVDSQKEN 266
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ ++ ALQWCSD YSD +LG+AN+IRTIDGGTHIEG+K LTRT N+L KK KD +
Sbjct: 267 VYVEAALQWCSDVYSDNILGFANNIRTIDGGTHIEGLKTVLTRTFNNLAKKRGKRKDIEK 326
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE++REGLT ++SV+VP+PEFEGQTKT+LGN EVR +VD + E LT+++E +P +L
Sbjct: 327 NLAGENIREGLTVVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSLIGEALTKFMEFNPGIL 386
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
D +L K++ + AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDSA
Sbjct: 387 DLVLEKAIQSFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPAESEIYIVEGDSA 446
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR+FQAILPLRGKILN+E+ D+ +YKN EIQ+LI ALGLG+KGE+F +L
Sbjct: 447 GGSAKQGRDRKFQAILPLRGKILNIEKTDDTKIYKNTEIQSLITALGLGIKGEEFDVSSL 506
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+++I+TDADVDGAHIRTLLLTFFYRYQ+ L ++G IY+ PPLYKVERGK +YCY+
Sbjct: 507 RYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVEKGYIYIACPPLYKVERGKNHKYCYN 566
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+ +LK SF NA Y+IQRFKGLGEMMP QLW+TT+NP+ RM+K++ IEDA EA+ +F
Sbjct: 567 ENQLKDTIGSFGENANYNIQRFKGLGEMMPKQLWDTTMNPQTRMMKRVEIEDALEADRIF 626
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ LMG +V R+E I+ ++ +++ LDI
Sbjct: 627 NILMGDKVAPRREFIETHSSKLDMATLDI 655
>gi|254526641|ref|ZP_05138693.1| DNA gyrase, B subunit [Prochlorococcus marinus str. MIT 9202]
gi|221538065|gb|EEE40518.1| DNA gyrase, B subunit [Prochlorococcus marinus str. MIT 9202]
Length = 655
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 280/509 (55%), Positives = 382/509 (75%), Gaps = 4/509 (0%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E++Q++ +G L + ++GT I F PDK +F+ I+F++ ++ R+RELA
Sbjct: 148 EFNQRFEKGLSKGELQTKK-QIGKSSKKGTTICFKPDKTIFSGGIEFEYALLSSRLRELA 206
Query: 62 FLNPKLTIALRKEDSDPEKNQYNE--YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDG 118
+LN + I R E + + E Y + GG++EYV+++N +K+ +H +++ +
Sbjct: 207 YLNGGVKIVFRDERNQLSDGSFKEEIYLYQGGIKEYVEYMNAEKESIHPEIIYVDSQREN 266
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ ++ ALQWCSD YSD +LG+AN+IRTIDGGTHIEG+K LTRT N+L KK KD +
Sbjct: 267 VYVEAALQWCSDVYSDNILGFANNIRTIDGGTHIEGLKTVLTRTFNNLAKKRGKRKDIEK 326
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE++REGLT ++SV+VP+PEFEGQTKT+LGN EVR +VD + E LT+Y+E +P +L
Sbjct: 327 NLAGENIREGLTVVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSLIGEALTKYMEFNPGIL 386
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
D IL K++ + AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDSA
Sbjct: 387 DLILEKAIQSFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDSA 446
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILPLRGKILN+E+ D+ +YKN EIQ+LI ALGLG+KGE+F +L
Sbjct: 447 GGSAKQGRDRNFQAILPLRGKILNIEKTDDTKIYKNTEIQSLITALGLGIKGEEFDVSSL 506
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+++I+TDADVDGAHIRTLLLTFFYRYQ+ L ++G IY+ PPLYKVERGK YCY+
Sbjct: 507 RYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVEKGFIYIACPPLYKVERGKNHNYCYN 566
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+ +LK F NA Y+IQRFKGLGEMMP QLW+TT+NP+ RM+K++ IEDA EA+ +F
Sbjct: 567 ENQLKNTIEGFGENANYNIQRFKGLGEMMPKQLWDTTMNPQTRMMKRVEIEDALEADRIF 626
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ LMG +V R+E I+ ++ +++ LDI
Sbjct: 627 NILMGDKVAPRREFIETHSSNLDMASLDI 655
>gi|126697163|ref|YP_001092049.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9301]
gi|126544206|gb|ABO18448.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9301]
Length = 655
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 281/509 (55%), Positives = 383/509 (75%), Gaps = 4/509 (0%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E++Q++ +G L S ++GT I F PDK +F+ I+F++ ++ R+RELA
Sbjct: 148 EFNQRFEKGISKGELESKKQTGKSS-KKGTTICFKPDKTIFSGGIEFEYALLSSRLRELA 206
Query: 62 FLNPKLTIALRKEDSDPEKNQYNE--YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDG 118
+LN + I R E + + E Y + GG++EYV+++N +K+ +H +++ +
Sbjct: 207 YLNGGVKIVFRDERNQLSDGSFKEEIYLYQGGIKEYVEYMNAEKESIHPEIIYVDSQKEN 266
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ ++ ALQWCSD YSD +LG+AN+IRTIDGGTHIEG+K LTRT N+L KK KD +
Sbjct: 267 VYVEAALQWCSDVYSDNILGFANNIRTIDGGTHIEGLKTVLTRTFNNLAKKRGKRKDIEK 326
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE++REGLT ++SV+VP+PEFEGQTKT+LGN EVR +VD + E LT+Y+E +P +L
Sbjct: 327 NLAGENIREGLTVVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSLIGEALTKYMEFNPGIL 386
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
D IL K++ + AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDSA
Sbjct: 387 DLILEKAIQSFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDSA 446
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILPLRGKILN+E+ D+ +YKN EIQ+LI ALGLG+KGE+F + +L
Sbjct: 447 GGSAKQGRDRNFQAILPLRGKILNIEKTDDTKIYKNTEIQSLITALGLGIKGEEFDESSL 506
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+++I+TDADVDGAHIRTLLLTFFYRYQ+ L ++G IY+ PPLYKVERGK YCY+
Sbjct: 507 RYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVEKGFIYIACPPLYKVERGKNHNYCYN 566
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+ +LK F NA Y+IQRFKGLGEMMP QLW+TT+NP+ RM+K++ IEDA EA+ +F
Sbjct: 567 ENQLKDTIQGFGENANYNIQRFKGLGEMMPKQLWDTTMNPQTRMMKRVEIEDALEADRIF 626
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ LMG +V R+E I+ ++ +++ LDI
Sbjct: 627 NILMGDKVAPRREFIETHSSNLDMATLDI 655
>gi|157414241|ref|YP_001485107.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9215]
gi|157388816|gb|ABV51521.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9215]
Length = 655
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 280/509 (55%), Positives = 381/509 (74%), Gaps = 4/509 (0%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E++Q++ +G L + ++GT I F PDK +F+ I+F++ ++ R+RELA
Sbjct: 148 EFNQRFEKGLSKGELQTKK-QIGKSSKKGTTICFKPDKTIFSGGIEFEYALLSSRLRELA 206
Query: 62 FLNPKLTIALRKEDSDPEKNQYNE--YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDG 118
+LN + I R E + + E Y + GG++EYV+++N +K +H +++ +
Sbjct: 207 YLNGGVKIVFRDERNQLSDGSFKEEIYLYQGGIKEYVEYMNAEKDSIHPEIIYVDSQREN 266
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ ++ ALQWCSD YSD +LG+AN+IRTIDGGTHIEG+K LTRT N+L KK KD +
Sbjct: 267 VYVEAALQWCSDVYSDNILGFANNIRTIDGGTHIEGLKTVLTRTFNNLAKKRGKRKDIEK 326
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE++REGLT ++SV+VP+PEFEGQTKT+LGN EVR +VD + E LT+Y+E +P +L
Sbjct: 327 NLAGENIREGLTVVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSLIGEALTKYMEFNPGIL 386
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
D IL K++ + AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEI+IVEGDSA
Sbjct: 387 DLILEKAIQSFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDSA 446
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILPLRGKILN+E+ D+ +YKN EIQ+LI ALGLG+KGE+F +L
Sbjct: 447 GGSAKQGRDRNFQAILPLRGKILNIEKTDDTKIYKNTEIQSLITALGLGIKGEEFDVSSL 506
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+++I+TDADVDGAHIRTLLLTFFYRYQ+ L ++G IY+ PPLYKVERGK YCY+
Sbjct: 507 RYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVEKGFIYIACPPLYKVERGKNHNYCYN 566
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+ +LK F NA Y+IQRFKGLGEMMP QLW+TT+NP+ RM+K++ IEDA EA+ +F
Sbjct: 567 ENQLKNTIEGFGENANYNIQRFKGLGEMMPKQLWDTTMNPQTRMMKRVEIEDALEADRIF 626
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ LMG +V R+E I+ ++ +++ LDI
Sbjct: 627 NILMGDKVAPRREFIETHSSNLDMASLDI 655
>gi|86607821|ref|YP_476583.1| DNA gyrase subunit B [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556363|gb|ABD01320.1| DNA gyrase, B subunit [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 642
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 286/507 (56%), Positives = 377/507 (74%), Gaps = 6/507 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++ RG V +L P S +R+GT +RF PD +F +FD+ +A R RELA+
Sbjct: 140 YFQRFERGAVVGSLKSEPQPKGS-NRRGTEVRFKPDGLIFPER-EFDYAVLAARFRELAY 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I DP + Y +AGG++EYV ++N +K P+H D++ + + DG+ +
Sbjct: 198 LNAGLKITFSDLRRDPPHCE--TYQYAGGIKEYVAFINHEKTPIHSDIIYIQGERDGVEV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQWCSD Y+DT++G+AN+IRT +GGTH+EG+K SLT T+NS +K +KD D +L+
Sbjct: 256 EVALQWCSDVYTDTLIGFANNIRTNEGGTHLEGLKTSLTLTINSQARKLNKLKDSDSNLA 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE+VREGLT I+SV+VPNPEFEGQTKT+LGN EVR +V V E LTEYLE +P+V I
Sbjct: 316 GENVREGLTAIVSVKVPNPEFEGQTKTKLGNTEVRGIVQTLVSEALTEYLEFNPNVARGI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ + AA AA+RAR+LVR+KS L SS+LPGKLADCS P ESE+++VEGDSAGGS
Sbjct: 376 VDKAIQSFNAAEAARRARELVRRKSALESSTLPGKLADCSCRDPAESEVYLVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQA+LPLRGKILN+E+ D A +YKN EIQ +I ALGLGVKG++F LRYH
Sbjct: 436 AKQGRDRQFQAVLPLRGKILNIEKADPAKIYKNAEIQAMITALGLGVKGDEFDPSQLRYH 495
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK-QVQYCYDDA 420
+II++TDADVDG+HIRTLLLTFFYRYQK L ++G +Y+ PPLYK+E G+ V+YCY DA
Sbjct: 496 RIILMTDADVDGSHIRTLLLTFFYRYQKALLEQGYVYIACPPLYKIEWGRNNVRYCYSDA 555
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
E ++ P+NA Y+IQRFKGLGEMMP QLWETT+NP R LKQ+ IEDA EA+ +F+
Sbjct: 556 EKDQILRGLPANAKYTIQRFKGLGEMMPEQLWETTMNPATRTLKQITIEDAVEADRIFTI 615
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMG V R+E I+ + ++L LDI
Sbjct: 616 LMGDAVGPRREFIEAHSAHLDLAALDI 642
>gi|123969376|ref|YP_001010234.1| DNA gyrase subunit B [Prochlorococcus marinus str. AS9601]
gi|123199486|gb|ABM71127.1| DNA gyrase, subunit B [Prochlorococcus marinus str. AS9601]
Length = 655
Score = 572 bits (1475), Expect = e-160, Method: Compositional matrix adjust.
Identities = 276/483 (57%), Positives = 371/483 (76%), Gaps = 3/483 (0%)
Query: 28 RQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNE-- 85
++GT I F PDK +F+ I+F++ ++ R+RELA+LN + I R E + + E
Sbjct: 173 KKGTSICFKPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNQLSDGSFKEEI 232
Query: 86 YFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIR 144
Y + GG++EYV+++N +K +H +++ + + ++ ALQWCSD YSD +LG+AN+IR
Sbjct: 233 YLYQGGIKEYVEYMNAEKDSIHPEIIYVDSQKENVYVEAALQWCSDVYSDNILGFANNIR 292
Query: 145 TIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEG 204
TIDGGTHIEG+K LTRT N+L KK KD + +L+GE++REGLT ++SV+VP+PEFEG
Sbjct: 293 TIDGGTHIEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEG 352
Query: 205 QTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQ 264
QTKT+LGN EVR +VD + E LT+Y+E +P +LD IL K++ + AA AA+RAR+LVR+
Sbjct: 353 QTKTKLGNTEVRGIVDSLIGEALTKYMEFNPAILDLILEKAIQSFNAAEAARRARELVRR 412
Query: 265 KSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVE 324
KSVL SS+LPGKLADCSS P ESEI+IVEGDSAGGSAKQGRDR FQAILPLRGKILN+E
Sbjct: 413 KSVLESSTLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNIE 472
Query: 325 RKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFF 384
+ D+ +YKN EIQ+LI ALGLG+KGE+F + +LRYH+++I+TDADVDGAHIRTLLLTFF
Sbjct: 473 KTDDTKIYKNTEIQSLITALGLGIKGEEFDESSLRYHRVVIMTDADVDGAHIRTLLLTFF 532
Query: 385 YRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLG 444
YRYQ+ L ++G IY+ PPLYKVERGK YCY++ +LK F NA Y+IQRFKGLG
Sbjct: 533 YRYQRELVEKGFIYIACPPLYKVERGKNHNYCYNENQLKDTIQGFGENANYNIQRFKGLG 592
Query: 445 EMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDH 504
EMMP QLW+TT+NP+ RM+K++ IEDA EA+ +F+ LMG +V R+E I+ + +++
Sbjct: 593 EMMPKQLWDTTMNPQTRMMKRVEIEDALEADRIFNILMGDKVAPRREFIETHSGNLDMAT 652
Query: 505 LDI 507
LDI
Sbjct: 653 LDI 655
>gi|384252438|gb|EIE25914.1| type II DNA topoisomerase [Coccomyxa subellipsoidea C-169]
Length = 744
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 288/517 (55%), Positives = 379/517 (73%), Gaps = 14/517 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E+ Q Y +G+P+T L LP + GT+++F DK VF + D TI R++ELA
Sbjct: 231 EFQQSYRQGRPMTELLEAQLPKKDSKKSGTQVKFLYDKDVFAKGVTMDPKTIRTRLQELA 290
Query: 62 FLNPKLTIALRKEDSD-----------PEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVV 110
FLN TI R +S P + ++ + F GGL EYV++LN D +P+H+ +
Sbjct: 291 FLNSNATIWFRTIESGSAPSNGNGASPPPEPEWEKLHFDGGLCEYVKYLNRDSQPMHEPI 350
Query: 111 GFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKS 170
+ VDG+ +++ALQWCSD +SD ++G+ NS++TIDGGTHI+G+KA+LTRTLN+LG+K+
Sbjct: 351 FVTEKVDGVVVEVALQWCSDTFSDLLIGFVNSVKTIDGGTHIDGLKAALTRTLNTLGRKT 410
Query: 171 KTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEY 230
K +K+ + +L+G+H+REGL+C+ISV+VP PEFEGQTKTRLGNPEVRK+VD V + + E
Sbjct: 411 KALKENEANLAGDHIREGLSCVISVKVPEPEFEGQTKTRLGNPEVRKIVDACVAKGIMES 470
Query: 231 LELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEI 290
LE+ L +L K+++A +AA AAK+AR+LVR+KS+L S+LPGKL+DC+ST SEI
Sbjct: 471 LEMDTATLGLVLGKAVAAWRAAEAAKKARELVRRKSLLTKSTLPGKLSDCTSTDKALSEI 530
Query: 291 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG 350
F+VEGDSAGGSAKQ RDRRFQA+LPLRGKILNVERKD+AA+YKN EI NLI ALGLG+KG
Sbjct: 531 FVVEGDSAGGSAKQARDRRFQAVLPLRGKILNVERKDDAALYKNNEISNLIVALGLGLKG 590
Query: 351 EDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG 410
E+ LRY K+I+LTDADVDGAHIRTLLLTF +RY + LFD G IYVGVPPLYK+E G
Sbjct: 591 EEMPN--LRYGKVILLTDADVDGAHIRTLLLTFLFRYARDLFDRGHIYVGVPPLYKLEVG 648
Query: 411 KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED 470
+ Y Y + EL S + Y++QRFKGLGEMMP QLW TTLNP RMLK+L + D
Sbjct: 649 RSSVYLYSEGELSARTQGLASGS-YTVQRFKGLGEMMPDQLWHTTLNPATRMLKRLTVND 707
Query: 471 AAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
AAEA+ +F+ LMG +V+ R+ LIQ + L+ LDI
Sbjct: 708 AAEASHLFALLMGDKVEPRRALIQAHGASLALEDLDI 744
>gi|303273552|ref|XP_003056137.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462221|gb|EEH59513.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 629
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 291/502 (57%), Positives = 371/502 (73%), Gaps = 11/502 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q +SRG V +T P + + GTR+RF PD Q+F FD N I R++ELAF
Sbjct: 118 FTQAFSRGYAVADMTESFEP-GADGKNGTRVRFKPDHQIFKEKASFDPNIIISRMKELAF 176
Query: 63 LNPKLTIALR---KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGI 119
LN T+ R + + N F GGL++YV LN + LHD + FR +V+G+
Sbjct: 177 LNSTATLKFRIPVDVHKKMTRKKANILSFPGGLKDYVVDLNMGSETLHDPITFRSEVEGV 236
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++ ALQW +A++DT LGYANSIRT DGG+H++G+K +LTRT+N+ +K+K +KD D +
Sbjct: 237 QVEGALQWTREAFTDTTLGYANSIRTSDGGSHLDGLKFALTRTVNAQARKAKLLKDGDSN 296
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L GEHVREGL+ +++V VP PEFEGQTKTRLGNPEVRKVV+ + E + E+LE +P VL
Sbjct: 297 LGGEHVREGLSAVLAVWVPQPEFEGQTKTRLGNPEVRKVVEAVIGEQIAEHLEFYPSVLQ 356
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
SI +K+ A KAA AAKRAR+LVR+KSVLRS SLPGKL+DCS++ P+ SEIF+VEGDSAG
Sbjct: 357 SIFNKAQQAAKAAEAAKRARELVRRKSVLRSGSLPGKLSDCSNSDPDISEIFLVEGDSAG 416
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDRRFQA+LPLRGKILNVERKDE++MYKN EI +++ ALGLG+KG+DF + ALR
Sbjct: 417 GSAKQGRDRRFQAVLPLRGKILNVERKDESSMYKNTEISSMVTALGLGLKGDDFDESALR 476
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVER------GKQ- 412
Y KI+ILTDADVDGAHIRTLLLTF YRYQ+ LF+ G ++V VPPLYKVE GK+
Sbjct: 477 YSKIVILTDADVDGAHIRTLLLTFLYRYQRALFERGKVFVAVPPLYKVEHTDGKGGGKRS 536
Query: 413 VQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
+ YCYD+ +L K+ SS P + SIQRFKGLGEMMP QLW TTLNPE R+LK+L ++DAA
Sbjct: 537 ITYCYDEVQLAKLLSSLPDDTKRSIQRFKGLGEMMPEQLWNTTLNPESRLLKRLTVDDAA 596
Query: 473 EANVVFSSLMGARVDTRKELIQ 494
E N F LM +V R+ I+
Sbjct: 597 EVNQTFQLLMSDKVAPRRAFIE 618
>gi|19909557|dbj|BAB86974.1| DNA gyrase subunit B [Synechococcus elongatus PCC 6301]
Length = 545
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 272/450 (60%), Positives = 349/450 (77%), Gaps = 7/450 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ +G P+ L V P D+ DR+GT++RF PD +F+ +FD+ T+A R++ELA+
Sbjct: 99 HQQRFEQGNPIGEL--QVAP-DADDRRGTQVRFKPDATIFSETTEFDYGTLASRLKELAY 155
Query: 63 LNPKLTIALRKEDSDPEKNQ---YNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDG 118
LN + I E KN Y+F GG+ EYV ++NTDK+ LH +++ + + DG
Sbjct: 156 LNAGVRIDFTDERLQLTKNHEPHQETYYFEGGIREYVAYMNTDKQALHSEIIFVQSEKDG 215
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ ++ ALQWC DAYSD +LG+AN+IRTIDGGTHIEG+K LTRT+N++ +K KD D
Sbjct: 216 VQVEAALQWCVDAYSDNILGFANNIRTIDGGTHIEGLKTVLTRTMNTIARKRNKRKDADN 275
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSGE++REGLT I+SV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYLE HP V
Sbjct: 276 NLSGENIREGLTAIVSVKVPDPEFEGQTKTKLGNTEVRGIVDTLVGETLTEYLEFHPSVA 335
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
D IL K++ A AA AA+RAR+LVR+KSVL SS+LPGKLADCSS P ESEIFIVEGDSA
Sbjct: 336 DLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPGESEIFIVEGDSA 395
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRRFQAILPLRGKILN+E+ D+A +YKN EIQ LI ALGLG+KGE+F L
Sbjct: 396 GGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDASQL 455
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+I+I+TDADVDGAHIRTLLLTFFYRYQ++L ++G +Y+ PPLYK+ERG+ YCY+
Sbjct: 456 RYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLLEQGYMYIACPPLYKLERGRNHYYCYN 515
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMP 448
+ EL++ ++FP NA Y+IQRFKGLGEMMP
Sbjct: 516 ERELQERIATFPENANYTIQRFKGLGEMMP 545
>gi|19909553|dbj|BAB86972.1| DNA gyrase subunit B [Leptolyngbya boryana IAM M-101]
Length = 546
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 257/443 (58%), Positives = 342/443 (77%), Gaps = 6/443 (1%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
Q++ RG + L P + R GT + F PD +FT +FD+ T++GR+RELA+LN
Sbjct: 109 QRFERGIAMGELQVEPYP---QARTGTSVTFLPDASIFTETTKFDYTTLSGRLRELAYLN 165
Query: 65 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITIDL 123
+ I E+ + YF+ GG+ EY+ ++N +K+PLH+ V F + +GI +++
Sbjct: 166 GGVRIKFADHREGSERE--DVYFYEGGIREYISYMNREKQPLHEEVIFVSGERNGIQVEV 223
Query: 124 ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGE 183
ALQWCSDAY+D ++G+AN+IRT+DGGTH+EG+KA LTRTLN++ +K +K+ + +L+GE
Sbjct: 224 ALQWCSDAYNDNIIGFANNIRTVDGGTHLEGLKAVLTRTLNTIARKRNKIKENESNLAGE 283
Query: 184 HVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILS 243
++REGLT +ISV+VP+PEFEGQTKT+LGN EVR +VD V E LTEYLE P+V D+I+
Sbjct: 284 NIREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPNVSDAIIE 343
Query: 244 KSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAK 303
K++ A KAA AA+ AR++VR+KSVL SS+LPGKLADC+S P ESEI+IVEGDSAGGSAK
Sbjct: 344 KAVQAFKAAEAARHAREMVRRKSVLESSTLPGKLADCASRDPSESEIYIVEGDSAGGSAK 403
Query: 304 QGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKI 363
QGRDRRFQAILPLRGKILN+E+ D++ +YKN EIQ LI ALGLG+KGE+F LRYH+I
Sbjct: 404 QGRDRRFQAILPLRGKILNIEKTDDSKIYKNTEIQALITALGLGIKGEEFDVSQLRYHRI 463
Query: 364 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELK 423
II+TDADVDGAHIRTLLLTFFYRYQ+ + D+G +Y+ PPL+KVERG+ YCY + EL+
Sbjct: 464 IIMTDADVDGAHIRTLLLTFFYRYQRMMVDQGYVYIACPPLFKVERGRNHYYCYSERELQ 523
Query: 424 KVKSSFPSNALYSIQRFKGLGEM 446
+ ++FP NA Y+IQRFKGLGEM
Sbjct: 524 ERLATFPDNASYNIQRFKGLGEM 546
>gi|145344184|ref|XP_001416617.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576843|gb|ABO94910.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 662
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 278/504 (55%), Positives = 368/504 (73%), Gaps = 4/504 (0%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY Q +SRG + + S ++GT IRF PD Q+F ++FD I R++ELA
Sbjct: 160 EYIQSFSRGIALGPMQEKKQD-GSGQKKGTMIRFKPDDQIFD-KVKFDPTIIRTRMKELA 217
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLN + LR D ++ + + FA GL++YV L +D LH+ + F +DG+ +
Sbjct: 218 FLNSGTELHLRTFDKKTKEYEDEKLLFAEGLKDYVLDLTSDATRLHEPITFSGTMDGVRV 277
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+ AL W +D+YSDT+LGYANSIRT DGGTH++G+K SLT+TLN + +K+K +KD D +L
Sbjct: 278 EGALCWTADSYSDTLLGYANSIRTTDGGTHLDGLKYSLTKTLNVVSRKAKLLKDSDPNLG 337
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+H+REGL+ +I+V VP PEFEGQTKTRLGN EVR++V+ + + ++E +P VL SI
Sbjct: 338 GDHIREGLSGVIAVWVPEPEFEGQTKTRLGNSEVRRIVENIANDAVAGHMEFNPSVLKSI 397
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+K+ SA KAA AAKRAR++VR+K+VL S+ LPGKL+DCSS+ +++EIF+VEGDSAGGS
Sbjct: 398 FAKAQSAFKAAEAAKRAREMVRRKTVLTSNRLPGKLSDCSSSDADQTEIFLVEGDSAGGS 457
Query: 302 AKQGRDRRFQAILPLRGKILNVERK-DEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
KQGRDR FQA+LPLRGKI+NVERK D AA+YKN EI N+I ALGLG GED ALRY
Sbjct: 458 CKQGRDRGFQAVLPLRGKIMNVERKLDAAALYKNTEITNMISALGLGGMGEDLDTTALRY 517
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
KIIILTDADVDGAHIRTLLLTF YRYQ+ LF++G +Y VPPLYKV GK+ YCYD+
Sbjct: 518 SKIIILTDADVDGAHIRTLLLTFLYRYQRDLFEKGYVYAAVPPLYKVVVGKKETYCYDED 577
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+L++V S P IQRFKGLGEMMP QLW TTLNP+ R+LK+L ++DA+ AN +FS+
Sbjct: 578 DLQEVLVSLPEGGAKHIQRFKGLGEMMPEQLWSTTLNPKTRVLKRLTVDDASAANHMFST 637
Query: 481 LMGARVDTRKELIQN-AANLVNLD 503
LM V+ R++LI + + L ++D
Sbjct: 638 LMSKDVEPRRKLITDEGSTLASID 661
>gi|160331171|ref|XP_001712293.1| gyrB [Hemiselmis andersenii]
gi|159765740|gb|ABW97968.1| gyrB [Hemiselmis andersenii]
Length = 688
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/509 (52%), Positives = 356/509 (69%), Gaps = 14/509 (2%)
Query: 6 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 65
++ RGK + + + K++ GT + F PD Q+F++ +D + GR+ ELAFLN
Sbjct: 185 RFVRGKTIGEIKAKKRNFNFKNKNGTSVNFKPDFQIFSSTFIYDPFILGGRLNELAFLNS 244
Query: 66 KLTIALRKEDSDPEKNQYNEYFFA--GGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDL 123
L + L+ D K NE F GG+ EY+ L+ K PLH + K++ GI++ +
Sbjct: 245 NLKLILQ----DRRKKNINESIFVHNGGISEYIFSLSKKKTPLHKTISIEKELKGISVQV 300
Query: 124 ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGE 183
ALQW +D + +L +AN+IRTI+GGTH++ +K +TRTLN G+K+ KD +LSGE
Sbjct: 301 ALQWTTDHSQENILSFANNIRTIEGGTHLDSLKIVITRTLNFFGRKTGKFKDNFRNLSGE 360
Query: 184 HVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELH-PDVLDSIL 242
+REGLT IISV++P PEFEGQTK++LGNP+VR +VD V +YL + E D SIL
Sbjct: 361 FIREGLTGIISVKIPEPEFEGQTKSKLGNPDVRSIVDTIVSDYLKNFFETQGKDACLSIL 420
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K++ A +A+ AAK+AR+LVR+KSVL ++LPGKLADCS P +SEIFIVEGDSAGGSA
Sbjct: 421 EKAIEAYQASEAAKKARELVRRKSVLEFTTLPGKLADCSLKDPNKSEIFIVEGDSAGGSA 480
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQ RDR FQAILPLRGKI+N+E+ DE +YKN EIQ LI ALGLG K E+F LRY +
Sbjct: 481 KQARDRMFQAILPLRGKIINIEKTDETRIYKNTEIQALISALGLGTKKENFDINRLRYRR 540
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVER-GKQVQ----YCY 417
III+TDADVDGAHIRTLLLTFFYRYQK L ++G +Y+ PPLYK+E GK +Q YCY
Sbjct: 541 IIIMTDADVDGAHIRTLLLTFFYRYQKKLIEKGLVYIACPPLYKIEETGKNLQNFKNYCY 600
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
DAEL+ S ++QRFKGLGEMMP QLWETT++PE+R+LK++ + D +AN +
Sbjct: 601 SDAELEFSLSKHIKK--LNVQRFKGLGEMMPEQLWETTMDPEKRVLKRVEVSDIEKANKI 658
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLD 506
F+ LMG +V RKE IQ A+ +NL+++D
Sbjct: 659 FNVLMGDKVFARKEFIQIHADKMNLENID 687
>gi|308801547|ref|XP_003078087.1| putative DNA gyrase B subunit (ISS) [Ostreococcus tauri]
gi|116056538|emb|CAL52827.1| putative DNA gyrase B subunit (ISS) [Ostreococcus tauri]
Length = 684
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 268/481 (55%), Positives = 359/481 (74%), Gaps = 3/481 (0%)
Query: 25 SKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYN 84
S +++GT +RF PD Q+F ++FD+N I R++ELAFLN + L+ ++ +
Sbjct: 204 SGNKKGTMVRFKPDDQIFD-KVKFDNNIIRTRMKELAFLNKGTELHLKTFNTKTKSYVEE 262
Query: 85 EYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIR 144
+ +A GL++YV L D LH+ + F +++GI ++ +L W +D+YSDT+LGYANSIR
Sbjct: 263 KLVYAEGLKDYVLDLTADATRLHEPITFSGEMEGIRVEGSLCWTADSYSDTLLGYANSIR 322
Query: 145 TIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEG 204
TIDGGTHI+G+K SLT+T+N+ +K+K +KD D +L G+HVREGL+ +I+V VP PEFEG
Sbjct: 323 TIDGGTHIDGLKYSLTKTINNASRKAKLLKDADSNLGGDHVREGLSGVIAVWVPEPEFEG 382
Query: 205 QTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQ 264
QTKTRLGN EVR++V+ + + + E + L ++ +K+ SA KAA AAKRAR+LVR+
Sbjct: 383 QTKTRLGNSEVRRIVENIASDAVMGHFEFNSADLKAVFAKAQSAFKAAEAAKRARELVRR 442
Query: 265 KSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVE 324
K+VL ++ LPGKL+DCSS+ + +EIF+VEGDSAGGS KQGRDR FQA+LPLRGKI+NVE
Sbjct: 443 KTVLTANRLPGKLSDCSSSDADRTEIFLVEGDSAGGSCKQGRDRSFQAVLPLRGKIMNVE 502
Query: 325 RK-DEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTF 383
RK D AA+YKN EI N+I ALGLG GED ALRY KIIILTDADVDGAHIRTLLLTF
Sbjct: 503 RKLDAAALYKNTEITNMISALGLGTMGEDLDTSALRYSKIIILTDADVDGAHIRTLLLTF 562
Query: 384 FYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGL 443
YRYQ+ LF++G +Y VPPLYKV GK+ YCYDD +L++V ++ P A IQRFKGL
Sbjct: 563 LYRYQRDLFEKGFVYAAVPPLYKVAVGKKETYCYDDDDLQRVLAALPEGANKHIQRFKGL 622
Query: 444 GEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNL 502
GEMMP QLW TTL+P+ R+LK+L ++DA+ AN +FS+LM VD R+ LI + A L ++
Sbjct: 623 GEMMPEQLWSTTLDPKTRLLKRLTVDDASAANHMFSTLMSKEVDPRRRLIEEEGAALASI 682
Query: 503 D 503
D
Sbjct: 683 D 683
>gi|307105660|gb|EFN53908.1| hypothetical protein CHLNCDRAFT_48978 [Chlorella variabilis]
Length = 663
Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 274/526 (52%), Positives = 365/526 (69%), Gaps = 39/526 (7%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT-------------TAIQF 48
++ Q++SRG + L ++GTR+RF D +F+ + F
Sbjct: 157 QFSQRFSRGVAQSPL-VEAPAAAGAPKRGTRVRFIYDDTIFSKTHTSPRPPLLPHCSATF 215
Query: 49 DHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNE-------YFFAGGLEEYVQWLNT 101
D +TI R+RELAFLN + TI R + E + ++GGL EYV++LN
Sbjct: 216 DPDTIRSRLRELAFLNSRATIYFRAGNGSSNGAAAAEAEPDWEVFHYSGGLAEYVRFLNR 275
Query: 102 DKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 161
DK P+H+ + F K G+ DT++G+ NSI+TIDGGTHI+G KA+LTR
Sbjct: 276 DKVPIHEPLCFSKQASGLR-----------RGDTIIGFVNSIKTIDGGTHIDGTKAALTR 324
Query: 162 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 221
T+NSLG+K K +K+ + +L+GE++REGL ++SV+VPNPEFEGQTKTRLGNPEVR++V+
Sbjct: 325 TVNSLGRKLKAIKEGESNLAGEYIREGLGAVVSVKVPNPEFEGQTKTRLGNPEVRRIVEG 384
Query: 222 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 281
V + E LE+ P ++IL+K++ A KAA AAK+AR+LVR+KSVL S+LPGKLADCS
Sbjct: 385 VVSSAVGEALEMEPTTFNTILAKAMQAFKAAEAAKKARELVRRKSVLTKSTLPGKLADCS 444
Query: 282 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 341
ST E+EIF+VEGDSAGGS KQ RDRR+QA+LPLRGKILN D++ +YKN EI NLI
Sbjct: 445 STNRAETEIFLVEGDSAGGSTKQARDRRYQAVLPLRGKILN----DDSKLYKNNEIANLI 500
Query: 342 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 401
LGLG+KGED LRY KIIILTDADVDGAHIRTLLLTF +RYQ+ +F++G +YVGV
Sbjct: 501 VGLGLGLKGEDAVN--LRYGKIIILTDADVDGAHIRTLLLTFLFRYQRAIFEKGHVYVGV 558
Query: 402 PPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQR 461
PPLYK++ G++ QYCY + ELK + + Y++QRFKGLGEMMP QLW TTLNPE R
Sbjct: 559 PPLYKLDVGRRAQYCYTEEELKAALAELAPCS-YTMQRFKGLGEMMPEQLWSTTLNPETR 617
Query: 462 MLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
L++L I+DAAEA+ +F+ LMG +V R+ELI+ + + L+ LDI
Sbjct: 618 TLRKLTIDDAAEASHMFALLMGDKVGPRRELIERHGSRLALEELDI 663
>gi|299117008|emb|CBN73779.1| DNA topoisomerase IV subunit B [Ectocarpus siliculosus]
Length = 688
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 252/490 (51%), Positives = 345/490 (70%), Gaps = 7/490 (1%)
Query: 25 SKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKE----DSDPEK 80
+++ GT +RF PD ++F T +F+ ++GR+ ELA+LN ++I + D D
Sbjct: 199 AEEAGGTAVRFLPDPEIFKTTTEFEFERLSGRMDELAYLNAGVSIVMADARSGVDEDGNF 258
Query: 81 NQYNEYFFAGGLEEYVQWLNTDKKPLH---DVVGFRKDVDGITIDLALQWCSDAYSDTML 137
+ Y GG++E+V+ + +K+ LH V+ + DG+ ++ L W SD Y+D+++
Sbjct: 259 KKTETYLHKGGVQEFVELMCKEKQHLHPDMKVIRALGERDGVQVEACLSWSSDMYTDSLV 318
Query: 138 GYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRV 197
+AN IRT DGGTH+EG+K+ +TRT+NS+G+KS +KD +L G+ VREGLT ++SV+V
Sbjct: 319 SFANGIRTGDGGTHLEGLKSIVTRTVNSMGRKSGKLKDSQSNLGGDFVREGLTAVVSVKV 378
Query: 198 PNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKR 257
P PEFEGQTK RLGNPEVR +VD V E L + E HP +L +IL K+ SA AA AAK
Sbjct: 379 PEPEFEGQTKNRLGNPEVRGIVDSIVGEELVKLFEWHPKILGAILDKASSAQAAAAAAKA 438
Query: 258 ARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLR 317
ARD+VR+KS+L S+ LPGKLADC+S P ESEI+IVEGDSA GSAKQGRDRR QAILPLR
Sbjct: 439 ARDMVRRKSLLTSTVLPGKLADCASRDPVESEIYIVEGDSAAGSAKQGRDRRTQAILPLR 498
Query: 318 GKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIR 377
GKILN+E+ +Y+N E+Q LI ALGLG+KG +F +LRYH+I+++TDADVDG+HIR
Sbjct: 499 GKILNIEKCASERIYQNNELQALISALGLGIKGNEFDASSLRYHRIVVMTDADVDGSHIR 558
Query: 378 TLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSI 437
LLLTFF+RYQ++L + G +++ PPLYK+++GK +Y Y E S P++ +
Sbjct: 559 ILLLTFFFRYQRSLIENGFVFIACPPLYKIKQGKTEKYVYTQEECDSAVSELPASPAVQL 618
Query: 438 QRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAA 497
QRFKGLGEMMP QLW+TT++P +R LK + +EDAA A+ +FS LMG V RKE I A
Sbjct: 619 QRFKGLGEMMPQQLWDTTMDPARRTLKLVTVEDAAAADRIFSVLMGDNVGPRKEFINEHA 678
Query: 498 NLVNLDHLDI 507
N + LD LD
Sbjct: 679 NNLKLDDLDF 688
>gi|452820768|gb|EME27806.1| DNA gyrase subunit B [Galdieria sulphuraria]
Length = 711
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 263/534 (49%), Positives = 364/534 (68%), Gaps = 31/534 (5%)
Query: 3 YHQKYSRGKP-----VTTLTCHVL----PVDSKDR------QGTRIRFWPDKQVFTTAIQ 47
Y Q++ RG P V +T +L + DR GT++ F+PD +F ++
Sbjct: 180 YEQEFQRGIPLGPMQVCDMTSDLLMEREGIQQYDRGFLQQKSGTKVHFYPDPVIFGETLE 239
Query: 48 FDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNE-------------YFFAGGLEE 94
D + +A R ELA+LN L I L +E E + E + GG+ E
Sbjct: 240 MDASFLAKRFDELAYLNAGLQIILYREMHQIEVQESVENGSQSRKQIHPQVFIHQGGIRE 299
Query: 95 YVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEG 154
+VQ+L+ +K+ +H+ V + + I ++ ALQW + YS+ +LG+ANSIR +DGG H+EG
Sbjct: 300 FVQFLSKEKQSMHETVYIHRRIKQIEMEAALQWNREQYSEIILGFANSIRNLDGGVHVEG 359
Query: 155 VKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE 214
K+ LT+ + + KK T K++ +S +GE +REGL IISV+VP PEF+GQTKT+LGNPE
Sbjct: 360 FKSGLTKCFHQMAKK--TSKNETLSWNGELIREGLIGIISVKVPEPEFQGQTKTKLGNPE 417
Query: 215 VRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLP 274
+R +V+Q + E + ++L+ +P+V ++L K +A +AA AAKRAR+L+R+KS L S++LP
Sbjct: 418 IRGLVEQVIIEEVGDFLQTNPEVFQALLDKVNAAARAAEAAKRARELIRRKSALESAALP 477
Query: 275 GKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKN 334
GKLADC++ P+E+E+FIVEGDSAGGSAKQGRDR FQAILPLRGKILNVE+ ++ +YKN
Sbjct: 478 GKLADCATRNPDEAELFIVEGDSAGGSAKQGRDRSFQAILPLRGKILNVEKANDVKIYKN 537
Query: 335 EEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDE 394
EI LI ALG GV FK E LRYH++II+TDADVDGAHIRTLLLTFFYRYQ+ L +
Sbjct: 538 AEIHALITALGAGVSDTHFKLELLRYHRVIIMTDADVDGAHIRTLLLTFFYRYQRPLIEH 597
Query: 395 GCIYVGVPPLYKVERGKQVQYCYDDAELKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWE 453
G +Y+ PPL+K ERGK +Y +D A L + ++ SNA Y+IQRFKGLGEMMPV+LW
Sbjct: 598 GHLYIACPPLFKFERGKTCKYFFDQASLDRFLEEELASNAKYTIQRFKGLGEMMPVELWN 657
Query: 454 TTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
TT+NP+ R LKQ+ I DAAE+N +F+ L+G +VD RK + A ++ D LDI
Sbjct: 658 TTMNPQTRCLKQVTITDAAESNNLFTMLLGDKVDRRKAFLNEHARSLSWDQLDI 711
>gi|159464611|ref|XP_001690535.1| DNA gyrase subunit B-like protein [Chlamydomonas reinhardtii]
gi|158280035|gb|EDP05794.1| DNA gyrase subunit B-like protein [Chlamydomonas reinhardtii]
Length = 649
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 275/520 (52%), Positives = 368/520 (70%), Gaps = 18/520 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKD--RQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
Y Q+YSRG P+ L +LP S++ R GT++RF D +F + + + IA R+ EL
Sbjct: 133 YSQRYSRGAPLEELRVQLLPPGSEEAGRSGTQVRFLYDASIFAKDVAYSADVIATRLHEL 192
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD--VVGFRKDVDG 118
AFLN + TI R + Q+ + ++GGL E+V L PLH+ VV G
Sbjct: 193 AFLNARATIRFRALRRGKPEGQWQVFQYSGGLREFVGCLQAAYTPLHEALVVTRADGGSG 252
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ ++ ALQW +D++ + + G+ANSI T+DGGTH+EG++A LTR + LG+K+K +KD D
Sbjct: 253 VVVEAALQWAADSFKEEVRGFANSIHTVDGGTHMEGLRAGLTRAVTQLGRKAKQIKDSDP 312
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
LSGEHVREGL ++SV+VPNPEFEGQTKTRLGNPEVRK+V+ +V E + E+LE HP L
Sbjct: 313 PLSGEHVREGLGAVVSVKVPNPEFEGQTKTRLGNPEVRKIVENAVYEAVGEWLEAHPAAL 372
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRS--SSLPGKLADCSSTTPEESEIFIVEGD 296
++ +K+L++ +AA AA++AR+LVR+K+ L + S+LPGKLADC+ST EE+EI+IVEGD
Sbjct: 373 AALCAKALTSARAAEAARKARELVRRKTSLFTGRSTLPGKLADCTSTNREETEIYIVEGD 432
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEA--AMYKNEEIQNLIRALG----LGVKG 350
SAGGSAKQ RDRRFQAILPL+GKILNVER +A MYKN EI NLI ALG +GV+
Sbjct: 433 SAGGSAKQARDRRFQAILPLKGKILNVERLTDANELMYKNTEISNLI-ALGYERTVGVRS 491
Query: 351 EDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG 410
+ L Y KI++LTDADVDGAHIRTLLLTF +R++ LF G +YV VPPLYKVERG
Sbjct: 492 RCHAFKLLLYGKIVVLTDADVDGAHIRTLLLTFLFRHRPQLFAAGRVYVAVPPLYKVERG 551
Query: 411 KQVQYCYDDAELKKVKSS---FPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLV 467
K V + + DAEL + S P YS+QRFKGLGEMMP QLW+TTLNPE R+L++L
Sbjct: 552 KSVWWAHSDAELAALVSEQRLAPGG--YSVQRFKGLGEMMPQQLWDTTLNPESRLLRRLT 609
Query: 468 IEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ D +EA+ + + LMG +V+ RK LI+ + ++LD LD+
Sbjct: 610 VRDVSEADSMLTMLMGTKVEPRKALIEAYSRRLSLDALDV 649
>gi|302830013|ref|XP_002946573.1| hypothetical protein VOLCADRAFT_79115 [Volvox carteri f.
nagariensis]
gi|300268319|gb|EFJ52500.1| hypothetical protein VOLCADRAFT_79115 [Volvox carteri f.
nagariensis]
Length = 676
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 266/528 (50%), Positives = 363/528 (68%), Gaps = 23/528 (4%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSK--DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIR 58
+ Y Q+YSRG + + L DS+ DR GT++ F D+ +F + + ++ + IA R+
Sbjct: 151 VRYSQRYSRGVALEEVQRTELQPDSEEADRTGTQVCFLYDRTIFASDVSYNPDIIATRLH 210
Query: 59 ELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKD--V 116
ELAFLN T+ ++ + F+GGL E+V L + PLH+ + +
Sbjct: 211 ELAFLNSSATMRFNATRKGQLDGEWQVFQFSGGLREFVGCLQSGYTPLHEAICVSRSDPP 270
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
G+ + ALQW +D++ + + G+ANSI T DGGTH++ ++++LTRT+ +L KK K +K+
Sbjct: 271 SGVVVHAALQWAADSFREEIRGFANSIHTADGGTHLDALRSALTRTITALAKKMKLIKEG 330
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
D LSGEH+REGL +I+V+VPNPEFEGQTKTRLGNPEVRK+V+ +V E + E+LE HP
Sbjct: 331 DPPLSGEHIREGLGAVIAVQVPNPEFEGQTKTRLGNPEVRKIVEATVAEAVGEWLEAHPA 390
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
L ++L K+L+A +AA AA++AR+L+R+K+ L S LPGKLADC+S + +EI++VEGD
Sbjct: 391 DLSALLGKALTAARAADAARKARELIRRKTSLSRSMLPGKLADCTSEERDRTEIYLVEGD 450
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLG--------- 347
SAGGSAKQ RDRRFQA+LPL+GKILNVER AAMYKN EI +LI ALGLG
Sbjct: 451 SAGGSAKQARDRRFQAVLPLKGKILNVERVAGAAMYKNAEISSLIVALGLGTDRAPALAT 510
Query: 348 ----VKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 403
V D +AL Y KI+ILTDADVDGAHIR LLLTF +RY+ LF G +YV VPP
Sbjct: 511 RGPDVAVRDTASKALEYGKIVILTDADVDGAHIRALLLTFLFRYRPQLFYAGHVYVAVPP 570
Query: 404 LYKVERGKQVQYCYDDAELKKVKSS---FPSNALYSIQRFKGLGEMMPVQLWETTLNPEQ 460
LYKVERG+ + + + + EL++V S P YS+QRFKGLGEMMP QLW+TTLNP
Sbjct: 571 LYKVERGRSLWWAHTEEELRRVVSENRLAPGG--YSVQRFKGLGEMMPQQLWDTTLNPAT 628
Query: 461 RMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAAN-LVNLDHLDI 507
R+L++L + DAAEA+ + +SLMGA+V RK LIQ +N L ++ LD+
Sbjct: 629 RLLRRLTVRDAAEADALLTSLMGAQVGPRKALIQEYSNRLQSISSLDV 676
>gi|288554611|ref|YP_003426546.1| DNA gyrase subunit B [Bacillus pseudofirmus OF4]
gi|288545771|gb|ADC49654.1| DNA gyrase subunit B [Bacillus pseudofirmus OF4]
Length = 646
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 252/503 (50%), Positives = 343/503 (68%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG P L + +++GT IRF PD ++FT +++++ +A R+RELAF
Sbjct: 152 YYQEYHRGVPAADLAV----IGETEKRGTIIRFKPDPEIFTETTEYEYDILATRLRELAF 207
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN LTI + + E+N+ + YF+ GG+ +V+ LN K+ LHD + + DG+ +
Sbjct: 208 LNKGLTITITDKR---EENKSSTYFYEGGIASFVEHLNRSKEVLHDEPIHIEAEKDGLNV 264
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y + +AN+I T +GGTH G K LTR +N +K K+ D +L+
Sbjct: 265 EVAVQY-NDGYVSNIYSFANNISTHEGGTHESGFKTGLTRVINDYARKHNLFKENDPNLT 323
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IISV++P+P+FEGQTKT+LGN E R V D E + ++ HP V I
Sbjct: 324 GEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTVTDSLFSEAFSRFMIEHPQVGKKI 383
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A AAK+AR+L R+KS L SSLPGKLADCSS SEI+IVEGDSAGGS
Sbjct: 384 VEKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCSSKDATISEIYIVEGDSAGGS 443
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKI+NVE+ + N EI+ +I ALG G+ G+DF E RYH
Sbjct: 444 AKQGRDRHFQAILPLRGKIINVEKARLDKILANNEIRAIITALGTGI-GDDFDIEKARYH 502
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTL+LTFFYRY + L ++G IY+ PPLYKV +G+ +QY Y+D E
Sbjct: 503 KIIIMTDADVDGAHIRTLILTFFYRYMRPLIEKGYIYIAQPPLYKVTQGRDLQYAYNDKE 562
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ S + IQR+KGLGEM P QLWETT++PE R + Q+ +EDA +A+ +F L
Sbjct: 563 LDQIMSQYTERNKVGIQRYKGLGEMNPTQLWETTMDPEYRTVLQVTLEDAMKADEIFEIL 622
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG RV+ R++ I +NA + NLD
Sbjct: 623 MGDRVEPRRDFIHENAQYVKNLD 645
>gi|70725006|ref|YP_251920.1| DNA gyrase subunit B [Staphylococcus haemolyticus JCSC1435]
gi|68445730|dbj|BAE03314.1| DNA gyrase (topoisomerase II) subunit B [Staphylococcus
haemolyticus JCSC1435]
Length = 644
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 252/502 (50%), Positives = 342/502 (68%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V S D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGSTDKTGTVIRFKADSEIFTETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN ++I LR E D E+ + + Y + GG++ YV+ LN +K+P+H+ + + D + I
Sbjct: 205 LNKGISITLRDEREDVEQRE-DTYHYEGGIKSYVELLNENKEPIHEEPIYIHQTKDDVEI 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +KD LS
Sbjct: 264 EIAMQYNS-GYATNLLSYANNIHTYEGGTHEDGFKRALTRILNSYGTQSKIIKDDKERLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR++VD+ E+ +L HP+V +
Sbjct: 323 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRLFAEHFERFLYEHPNVARIV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 383 VEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSKKPEESEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K+GRD + QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 443 TKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLAQGKQKYYVFNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS + I R+KGLGEM QLWETT+NPE RM+ Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELSPTPKWQISRYKGLGEMNADQLWETTMNPENRMMLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|228474176|ref|ZP_04058913.1| DNA gyrase, B subunit [Staphylococcus hominis SK119]
gi|228271871|gb|EEK13208.1| DNA gyrase, B subunit [Staphylococcus hominis SK119]
Length = 640
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 252/502 (50%), Positives = 342/502 (68%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V S D+ GT IRF D ++F+ +++ T+ RIRELAF
Sbjct: 145 YHQAYKKGVPQFDLK----EVGSTDKTGTVIRFKADSEIFSETTVYNYETLQKRIRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN ++I LR E D E+ + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 201 LNKGISITLRDEREDKEQRE-DTYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +KD LS
Sbjct: 260 EIAIQYNS-GYATNLLSYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKDDKERLS 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++SV+ NP+FEGQTKT+LGN EVR++VD+ E+ +L +P+V I
Sbjct: 319 GEDTREGLTAVVSVKHGNPQFEGQTKTKLGNSEVRQIVDRLFSEHFERFLYENPNVARII 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS P+ESEIF+VEGDSAGGS
Sbjct: 379 VEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSKNPDESEIFLVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K+GRD + QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 439 TKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 498 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K+ + I R+KGLGEM QLWETT+NPE RM+ Q+ +EDA EA+ F L
Sbjct: 558 LDKLKAELNPTPKWQISRYKGLGEMNADQLWETTMNPENRMMLQVKLEDAVEADQTFEML 617
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 618 MGDVVENRRQFIEDNAVYANLD 639
>gi|393809339|gb|AFN25843.1| DNA gyrase subunit B [Staphylococcus hominis]
Length = 644
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 252/502 (50%), Positives = 342/502 (68%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V S D+ GT IRF D ++F+ +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGSTDKTGTVIRFKADSEIFSETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN ++I LR E D E+ + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGISITLRDEREDKEQRE-DTYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +KD LS
Sbjct: 264 EIAIQYNS-GYATNLLSYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKDDKERLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++SV+ NP+FEGQTKT+LGN EVR++VD+ E+ +L +P+V I
Sbjct: 323 GEDTREGLTAVVSVKHGNPQFEGQTKTKLGNSEVRQIVDRLFSEHFERFLYENPNVARII 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS P+ESEIF+VEGDSAGGS
Sbjct: 383 VEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSKNPDESEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K+GRD + QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 443 TKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K+ + I R+KGLGEM QLWETT+NPE RM+ Q+ +EDA EA+ F L
Sbjct: 562 LDKLKAELNPTPKWQISRYKGLGEMNADQLWETTMNPENRMMLQVKLEDAVEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|402300224|ref|ZP_10819751.1| DNA gyrase subunit B [Bacillus alcalophilus ATCC 27647]
gi|401724614|gb|EJS97959.1| DNA gyrase subunit B [Bacillus alcalophilus ATCC 27647]
Length = 641
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 255/505 (50%), Positives = 339/505 (67%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQKY +G P L + + GT+ F PD ++F I +D++T+A R+RELAF
Sbjct: 147 YHQKYHQGVPAADLAI----IGKSENSGTKTHFKPDPEIFQETIVYDYDTLALRLRELAF 202
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN LTI + ++ED K Y++ GG+ +V+ LN K+ LHD + + DG+
Sbjct: 203 LNKGLTITITDKREDGKSAK-----YYYEGGIASFVKHLNRTKEVLHDEPIHIEGEKDGL 257
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+Q+ +D Y + +AN+I T +GGTH G K +LTR +N +K+ VK+ D +
Sbjct: 258 NVEVAVQY-NDGYVGNLYSFANNISTHEGGTHESGFKTALTRVINDYARKNSLVKENDPN 316
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+G+ VREGLT IISV++P+P+FEGQTKT+LGN E R + D E+ + +L +P V
Sbjct: 317 LTGDDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSLFSEHFSRFLIENPQVAR 376
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K L A +A AAK+AR+L R+KS L S+LPGKLADC+S SEI+IVEGDSAG
Sbjct: 377 KIVEKGLMASRAREAAKKARELTRRKSALEVSALPGKLADCASKDASISEIYIVEGDSAG 436
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPLRGKI+NVE+ + N EI+ +I A G GV G DF E R
Sbjct: 437 GSAKQGRDRHFQAILPLRGKIINVEKARLDKILANNEIRAMITAFGTGVGG-DFDIEKAR 495
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHKIII+TDADVDGAHIRTLLLTFFYRY K L + G +Y+ PPLYKV GK++QY Y
Sbjct: 496 YHKIIIMTDADVDGAHIRTLLLTFFYRYMKPLIEYGYVYIAQPPLYKVTHGKEIQYAYVQ 555
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL + S+P A IQR+KGLGEM P QLWETT++PE R L Q+ +EDA +A+ +F
Sbjct: 556 KELDPILKSYPEGAKIGIQRYKGLGEMNPTQLWETTMDPEHRTLLQVTLEDAIKADEIFE 615
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG RV+ R++ IQ NA + NLD
Sbjct: 616 ILMGDRVEPRRDFIQENAQYVENLD 640
>gi|15612569|ref|NP_240872.1| DNA gyrase subunit B [Bacillus halodurans C-125]
gi|4033396|sp|O50627.1|GYRB_BACHD RecName: Full=DNA gyrase subunit B
gi|2760177|dbj|BAA24187.1| B subunit of DNA gyrase [Bacillus sp.]
gi|5672652|dbj|BAA82690.1| gyrB [Bacillus halodurans]
gi|10172618|dbj|BAB03725.1| DNA gyrase subunit B [Bacillus halodurans C-125]
Length = 637
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 251/503 (49%), Positives = 342/503 (67%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QK+ RG P L + + DR GT+I F PD +FT F+++T+A R+RELAF
Sbjct: 143 HYQKFHRGVPAADLEV----IGTTDRTGTKIHFKPDGDIFTETTVFEYDTLASRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN L I + E+ + +E+ + GG+ +V+ LN ++ LH+ + + G+ +
Sbjct: 199 LNKGLRIKITDMR---EEEKSDEFHYEGGIASFVEHLNRTRETLHETPIHIEGEKQGVYV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D ++ + +AN+I T +GGTH G K LTR +N +K K+ D +L+
Sbjct: 256 EIAVQY-NDGFTSNIYSFANNINTHEGGTHESGFKTGLTRVINDYARKHNLFKESDPNLT 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IISV++P+P+FEGQTKT+LGN E R + D E+ + +L HP V +
Sbjct: 315 GEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSLFTEHFSRFLIEHPQVARKL 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A AAK+AR+L R+KS L SSLPGKLADCSS SEI+IVEGDSAGGS
Sbjct: 375 VDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCSSRDASISEIYIVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N EI+ +I ALG G+ G+DF E RYH
Sbjct: 435 AKQGRDRHFQAILPLRGKILNVEKARLDKILANNEIRAIITALGTGI-GDDFDIEKARYH 493
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTL+LTFFYRY + L + G +Y+ PPLYKV++GK +QY Y DAE
Sbjct: 494 KIIIMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQPPLYKVQQGKDIQYAYGDAE 553
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ S P A IQR+KGLGEM P QLWETT++P QR + Q+ +EDA +A+ +F L
Sbjct: 554 LQEILSQLPDKAKPGIQRYKGLGEMNPSQLWETTMDPGQRTVLQVTLEDAMKADEIFEIL 613
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG RV+ R++ IQ NA + NLD
Sbjct: 614 MGDRVEPRRDFIQENARYVKNLD 636
>gi|392956558|ref|ZP_10322085.1| DNA gyrase subunit B [Bacillus macauensis ZFHKF-1]
gi|391877540|gb|EIT86133.1| DNA gyrase subunit B [Bacillus macauensis ZFHKF-1]
Length = 640
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/503 (48%), Positives = 346/503 (68%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+HQKY RG PV+ L + +GT+I F PD ++FT ++D T++ RIRELA+
Sbjct: 146 HHQKYHRGVPVSDLEV----IGETTERGTKIHFVPDTEIFTETTEYDFATLSQRIRELAY 201
Query: 63 LNPKLTI-ALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
LN + I A+ + + +P K E+ + GG++ YV+ +N ++ LH+ + + +GI++
Sbjct: 202 LNRGIKICAVDQREENPTKQ---EFHYEGGIKSYVEHINRSREVLHEPIFIEGEKEGISL 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + +AN+I T +GGTH G K +LTR +N G+K+ K D +L+
Sbjct: 259 EIALQY-NDSYTSNIYSFANNISTHEGGTHESGFKTALTRVINDYGRKNNYFKGSDTNLT 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + + E+ + ++ +PDV +
Sbjct: 318 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITESLFSEHFSSFMLENPDVAKRV 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K + AL+A +AAK+AR+ R+KS L SSLPGKLADCSS SE++IVEGDSAGGS
Sbjct: 378 LEKGMMALRARVAAKKAREFTRRKSALEVSSLPGKLADCSSKDASVSELYIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKI+NVE+ + N EI+ +I ALG G+ GEDF RYH
Sbjct: 438 AKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEIRAIITALGTGI-GEDFDISKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+++Y YDD E
Sbjct: 497 KVIIMTDADVDGAHIRTLLLTFFYRYMRPIIEHGYVYIAQPPLYKVQQGKRIEYAYDDKE 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
+ ++ P +QR+KGLGEM P QLWETT++P+ R L Q+ ++DA +A+ F L
Sbjct: 557 MDRIMKELPQQPKPGVQRYKGLGEMNPTQLWETTMDPQTRTLLQVELKDAMDADETFEIL 616
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R++ IQ A V NLD
Sbjct: 617 MGDKVEPRRDFIQEHAQYVENLD 639
>gi|196249898|ref|ZP_03148594.1| DNA gyrase, B subunit [Geobacillus sp. G11MC16]
gi|196210774|gb|EDY05537.1| DNA gyrase, B subunit [Geobacillus sp. G11MC16]
Length = 640
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 261/506 (51%), Positives = 346/506 (68%), Gaps = 17/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG+P T L +D DR GT RF PD ++FT +FD+ T+A R+RELAF
Sbjct: 146 HYQKYERGEPRTDLQV----IDETDRTGTTTRFKPDPEIFTETTEFDYETLATRLRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN L I L E D N+ NEYF+ GG+ YV+ LN ++ LH+ + G R DG
Sbjct: 202 LNRGLKITLTDERVD---NRKNEYFYEGGIRSYVRHLNRTREVLHEEPIYIAGER---DG 255
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++ALQ+ +D Y+ + + N+I T +GGTH G K +LTR +N +K + KD D
Sbjct: 256 IAVEIALQY-NDGYTSNIYSFVNNIHTHEGGTHESGFKMALTRIINDYARKQQIFKDNDA 314
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE VREGLT I+S++ P P+FEGQTKT+LGN + R V D E +L HP V
Sbjct: 315 NLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLEHPAVA 374
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K + A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE+++VEGDSA
Sbjct: 375 RKIVEKGMMAARARVAAKKARELTRRKSALEISNLPGKLADCSSRDPSISELYVVEGDSA 434
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILPLRGKILNVE+ + N E++ +I ALG G+ GEDF
Sbjct: 435 GGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITALGTGI-GEDFDISKA 493
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHK+II+TDADVDGAHIRTLLLTFFYRY + L + G IY+ PPLYK+E+GKQV+Y Y+
Sbjct: 494 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIERGYIYIAQPPLYKIEQGKQVRYAYN 553
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D +L+K+ + P+ IQR+KGLGEM P QLWETT+NPE R L Q+ ++DA +A+ F
Sbjct: 554 DRQLEKILAELPAQPKPMIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDAIDADETF 613
Query: 479 SSLMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R++ I +NA + NLD
Sbjct: 614 EILMGDKVEPRRQFIEENARYVKNLD 639
>gi|314935205|ref|ZP_07842558.1| DNA gyrase, B subunit [Staphylococcus hominis subsp. hominis C80]
gi|313656540|gb|EFS20279.1| DNA gyrase, B subunit [Staphylococcus hominis subsp. hominis C80]
Length = 644
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 251/502 (50%), Positives = 342/502 (68%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V S ++ GT IRF D ++F+ +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGSTEKTGTVIRFKADSEIFSETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN ++I LR E D E+ + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGISITLRDEREDKEQRE-DTYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +KD LS
Sbjct: 264 EIAIQYNS-GYATNLLSYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKDDKERLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++SV+ NP+FEGQTKT+LGN EVR++VD+ E+ +L +P+V I
Sbjct: 323 GEDTREGLTAVVSVKHGNPQFEGQTKTKLGNSEVRQIVDRLFSEHFERFLYENPNVARII 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS P+ESEIF+VEGDSAGGS
Sbjct: 383 VEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSKNPDESEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K+GRD + QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 443 TKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K+ + I R+KGLGEM QLWETT+NPE RM+ Q+ +EDA EA+ F L
Sbjct: 562 LDKLKAELNPTPKWQISRYKGLGEMNADQLWETTMNPENRMMLQVKLEDAVEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|138893684|ref|YP_001124137.1| DNA gyrase subunit B [Geobacillus thermodenitrificans NG80-2]
gi|134265197|gb|ABO65392.1| DNA gyrase subunit B [Geobacillus thermodenitrificans NG80-2]
Length = 640
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 261/506 (51%), Positives = 346/506 (68%), Gaps = 17/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG+P T L +D DR GT RF PD ++FT +FD+ T+A R+RELAF
Sbjct: 146 HYQKYERGEPRTDLQV----IDETDRTGTTTRFKPDPEIFTETTEFDYETLATRLRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN L I L E D N+ NEYF+ GG+ YV+ LN ++ LH+ + G R DG
Sbjct: 202 LNRGLKITLTDERVD---NRKNEYFYEGGIRSYVRHLNRTREVLHEEPIYIAGER---DG 255
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++ALQ+ +D Y+ + + N+I T +GGTH G K +LTR +N +K + KD D
Sbjct: 256 IAVEIALQY-NDGYTSNIYSFVNNIHTHEGGTHESGFKMALTRIINDYARKQQIFKDNDA 314
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE VREGLT I+S++ P P+FEGQTKT+LGN + R V D E +L HP V
Sbjct: 315 NLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLEHPAVA 374
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K + A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE+++VEGDSA
Sbjct: 375 RKIVEKGMMAARARVAAKKARELTRRKSALEISNLPGKLADCSSRDPSISELYVVEGDSA 434
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILPLRGKILNVE+ + N E++ +I ALG G+ GEDF
Sbjct: 435 GGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITALGTGI-GEDFDISKA 493
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHK+II+TDADVDGAHIRTLLLTFFYRY + L + G IY+ PPLYK+E+GKQV+Y Y+
Sbjct: 494 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIERGYIYIAQPPLYKIEQGKQVRYAYN 553
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D +L+K+ + P+ IQR+KGLGEM P QLWETT+NPE R L Q+ ++DA +A+ F
Sbjct: 554 DRQLEKILAELPAQPKPMIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDAIDADETF 613
Query: 479 SSLMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R++ I +NA + NLD
Sbjct: 614 EILMGDKVEPRRQFIEENARYVKNLD 639
>gi|88602335|ref|YP_502513.1| DNA gyrase, B subunit [Methanospirillum hungatei JF-1]
gi|88187797|gb|ABD40794.1| DNA gyrase subunit B [Methanospirillum hungatei JF-1]
Length = 675
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 250/478 (52%), Positives = 346/478 (72%), Gaps = 8/478 (1%)
Query: 30 GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA 89
GT IRF PD ++F T I+FD++ +A R+RELAFLN +TI++ E + + + +
Sbjct: 201 GTMIRFKPDSKIFET-IEFDYDILAHRLRELAFLNSGITISIADERCEDLEECSEVFSYE 259
Query: 90 GGLEEYVQWLNTDKKPLHD-VVGF-RKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTI 146
GG+ EYV++LN + +P+H+ V+ F RKD + + +D+A Q+ + AYS+ + Y NS+ T
Sbjct: 260 GGISEYVRYLNHEAQPIHESVISFSRKDEEARVEVDIAFQYAA-AYSEKVYTYVNSVNTK 318
Query: 147 DGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQT 206
+GGTH+EG +++LT+ +N +GK++K +KD+++SL G+ VREGLT IISVR+ NP+FEGQT
Sbjct: 319 EGGTHLEGFRSALTKAINKMGKENKAIKDQNLSLKGDDVREGLTAIISVRMANPQFEGQT 378
Query: 207 KTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKS 266
K +LGN EV+ +VD V L EY E HP L +I+ K++ A +A AA++A++L R+KS
Sbjct: 379 KMKLGNSEVKGIVDSLVYASLCEYFEEHPKELAAIVDKAVLAYQAREAARKAKELARRKS 438
Query: 267 VLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERK 326
L SS LPGKLADCS + E+SEI+IVEGDSAGGSAKQGRDRRFQAILPLRGKILNVE+
Sbjct: 439 TLESSGLPGKLADCSERSAEKSEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKA 498
Query: 327 DEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYR 386
+ KN EIQ LI A+G GV GE F E RYH III+TDADVDGAHI TLL+TFF+R
Sbjct: 499 TVHKILKNNEIQALISAIGTGV-GESFDIEKARYHHIIIMTDADVDGAHISTLLMTFFFR 557
Query: 387 YQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEM 446
Y + L + G IY+ PPLY++ +GKQ +Y Y + E+K++ + ++QR+KGLGEM
Sbjct: 558 YLQPLIEAGYIYLAQPPLYRIAKGKQEKYAYTEEEMKEILQEMGEKGV-NVQRYKGLGEM 616
Query: 447 MPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 503
QLW TT++PE R+LK++VIEDAA AN +F LMG V R++ I+ +A + NLD
Sbjct: 617 NASQLWATTMDPETRVLKRVVIEDAAYANEIFEKLMGDDVTARRDFIKRHAKEVTNLD 674
>gi|374307331|ref|YP_005053762.1| DNA gyrase subunit B [Filifactor alocis ATCC 35896]
gi|291165885|gb|EFE27932.1| DNA gyrase, B subunit [Filifactor alocis ATCC 35896]
Length = 638
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 259/503 (51%), Positives = 347/503 (68%), Gaps = 13/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++S+G T L V + GT + F PD ++F +++ + T+ R+RELAF
Sbjct: 146 YVQEFSKGISETELQ----EVGVTEETGTMVEFQPDAEIFD-ELEYRYETLEYRLRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN ++I L ED + Q E+ + GGL+E+V +LN +K PLH DV+ F K +D +
Sbjct: 201 LNKGISIVL--EDKRAGQEQKKEFSYLGGLKEFVVFLNKNKTPLHKDVIHFEKQIDEYYL 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +DAY + + +AN+I TI+GG H+ G K +LTRT+N KKS K+K+ SLS
Sbjct: 259 EIAIQY-TDAYIENIYSFANNINTIEGGMHLIGFKTALTRTINDYLKKSN--KNKEESLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IIS+++P P++EGQTKT+LGNP+VR VVD + EY YLE +P V I
Sbjct: 316 GEDVREGLTAIISIKLPEPQYEGQTKTKLGNPQVRSVVDSFLAEYFGAYLEENPQVAKII 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+++A A AAKRARDL R+K VL S+SLPGKLADCS P SEI+IVEGDSAGGS
Sbjct: 376 IEKAMNARSAREAAKRARDLTRRKGVLDSTSLPGKLADCSERDPALSEIYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+ QAILPLRGKILNVE+ + +EEI+N+I A G + GE+F + LRYH
Sbjct: 436 AKQGRDRKTQAILPLRGKILNVEKSRLDRILTSEEIKNMITAFGCSI-GEEFDESKLRYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTF +RY K L + G +Y+ PPL+K+ RGK+ Y Y++ E
Sbjct: 495 KIVIMTDADVDGAHIRTLLLTFMFRYMKPLIENGYVYIAQPPLFKIHRGKKEVYAYNEKE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + F IQR+KGLGEM P QLWETT+NP+ R L ++ +ED + A+ FS L
Sbjct: 555 LPAILQEFGEGHKPGIQRYKGLGEMNPEQLWETTMNPDTRTLLRVTVEDFSGADDTFSML 614
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R+E I N A V NLD
Sbjct: 615 MGDKVEPRREFIHNNAQYVKNLD 637
>gi|33469292|gb|AAQ19683.1| DNA gyrase subunit B [Staphylococcus haemolyticus]
Length = 644
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 251/502 (50%), Positives = 341/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V S D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGSTDKTGTVIRFKADGEIFTETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN ++I LR E D E+ + + Y + GG++ YV+ LN +K+P+H+ + + D + I
Sbjct: 205 LNKGISITLRDEREDVEQRE-DTYHYEGGIKSYVELLNENKEPIHEEPIYIHQTKDDVEI 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +KD LS
Sbjct: 264 EIAMQYNS-GYATNLLSYANNIHTYEGGTHEDGFKRALTRILNSYGTQSKIIKDDKERLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR++VD+ E+ +L HP+V +
Sbjct: 323 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRLFAEHFERFLYEHPNVARIV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 383 VEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSKKPEESEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K+GRD + QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 443 TKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLAQGKQKYYVFNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS + I R+KGLGEM QLWETT+NPE RM+ Q+ +EDA EA+ L
Sbjct: 562 LDKLKSELSPTPKWQISRYKGLGEMNADQLWETTMNPENRMMLQVKLEDAIEADHTCEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|387928232|ref|ZP_10130910.1| DNA gyrase subunit B [Bacillus methanolicus PB1]
gi|387587818|gb|EIJ80140.1| DNA gyrase subunit B [Bacillus methanolicus PB1]
Length = 640
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 257/503 (51%), Positives = 347/503 (68%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L + DR GT IRF PD ++FT ++FD+ T+A R+RELAF
Sbjct: 146 HYQKYERGVPCEDLKL----IGETDRTGTTIRFKPDGEIFTETLEFDYETLANRLRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I + ED E N+ NEY++ GG++ YV+ LN ++ LH+ + + DGIT+
Sbjct: 202 LNRGIRITI--EDKRVE-NKRNEYYYEGGIKSYVEHLNRTREVLHEEPIYMEGEKDGITV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D +S + +AN+I T +GGTH G K +LTR +N +K K+ D +LS
Sbjct: 259 EVALQY-NDGFSSNIYSFANNIHTYEGGTHESGFKTALTRVINDYARKHGIFKENDANLS 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT I+S++ P+P+FEGQTKT+LGN EVR + D E +L +P V I
Sbjct: 318 GEDVREGLTAIVSIKHPDPQFEGQTKTKLGNSEVRAITDTIFAENFETFLLENPSVARKI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L +A LAAK+AR+L R+K+ L SSLPGKLADCSS P SE+++VEGDSAGGS
Sbjct: 378 VEKGLMGARARLAAKKARELTRRKNALEVSSLPGKLADCSSKDPSISELYVVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++ +I A+G G+ GEDF RYH
Sbjct: 438 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITAVGTGI-GEDFDISKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV+ GK+++Y Y+D +
Sbjct: 497 KIVIMTDADVDGAHIRTLLLTFFYRYMRKILEAGYVYIAQPPLYKVQHGKRIEYAYNDRQ 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ S PS IQR+KGLGEM P QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 557 LEQILSELPSQPKPGIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLEDAIEADETFEIL 616
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V+ R++ I +NA + NLD
Sbjct: 617 MGDKVEPRRQFIEENAIYVKNLD 639
>gi|415883916|ref|ZP_11545945.1| DNA gyrase subunit B [Bacillus methanolicus MGA3]
gi|387591711|gb|EIJ84028.1| DNA gyrase subunit B [Bacillus methanolicus MGA3]
Length = 640
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 257/503 (51%), Positives = 350/503 (69%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L + DR GT IRF PD ++FT ++FD+ T+A R+RELAF
Sbjct: 146 HYQKYERGVPCEDLKV----IGETDRTGTTIRFKPDGEIFTETLEFDYETLANRLRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I + ED E N+ NEY++ GG++ YV+ LN ++ LH+ + + DGIT+
Sbjct: 202 LNRGIRITI--EDKRVE-NKRNEYYYEGGIKSYVEHLNRTREVLHEEPIYMEGEKDGITV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D ++ + +AN+I T +GGTH G K +LTR +N +K +K+ D +LS
Sbjct: 259 EVALQY-NDGFTSNIYSFANNIHTYEGGTHESGFKTALTRVINDYARKYGIIKENDANLS 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT I+S++ P+P+FEGQTKT+LGN EVR V D E +L +P V I
Sbjct: 318 GEDVREGLTAIVSIKHPDPQFEGQTKTKLGNSEVRAVTDTIFAENFETFLLENPSVARKI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A LAAK+AR+L R+K+ L SSLPGKLADCSS P SE+++VEGDSAGGS
Sbjct: 378 VEKGLMAARARLAAKKARELTRRKNALDVSSLPGKLADCSSKDPSISELYVVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++ +I A+G G+ GEDF RYH
Sbjct: 438 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITAIGTGI-GEDFDISKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYK+++GK+++Y Y+D +
Sbjct: 497 KIVIMTDADVDGAHIRTLLLTFFYRYMRKILEAGYVYIAQPPLYKIQQGKRIEYAYNDRQ 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ S PS IQR+KGLGEM P QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 557 LEEILSELPSQPKPGIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLEDAIEADETFEIL 616
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V+ R++ I +NA + NLD
Sbjct: 617 MGDKVEPRRQFIEENAIYVKNLD 639
>gi|404329035|ref|ZP_10969483.1| DNA gyrase subunit B [Sporolactobacillus vineae DSM 21990 = SL153]
Length = 639
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 255/502 (50%), Positives = 348/502 (69%), Gaps = 10/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RGKPV L + DR GT F PD ++F F++ T+ RIRELAF
Sbjct: 146 YYQEYHRGKPVADLKI----IGDTDRTGTTTHFIPDPEIFKETTHFNYETLRVRIRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN + I++ ED EK++ + + GG+ EYV +LN K+ LH + + DGI ++
Sbjct: 202 LNKNIRISI--EDRR-EKDKKESFHYEGGIREYVAFLNRSKEVLHQPIDLEGEQDGIKVE 258
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+A+Q+ +D ++ + +AN+I T +GGTH G K +LTR +N +K++ +K D +LSG
Sbjct: 259 IAMQY-NDGFACQLYSFANNIHTHEGGTHEYGFKVALTRVINDYARKNQLMKSSDPNLSG 317
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
E VREGLT I+SV+ P+P+FEGQTKT+LGNPEVR + D + +L +PD+ I+
Sbjct: 318 EDVREGLTAIVSVKHPDPQFEGQTKTKLGNPEVRTITDNLFSNSFSRFLYENPDIARLIV 377
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K A +A AAK+AR+L R+KS L SSSLPGKLADC+S SE++IVEGDSAGGSA
Sbjct: 378 EKGTIASRARSAAKKARELTRRKSSLESSSLPGKLADCTSRDASISELYIVEGDSAGGSA 437
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQGRDR +QAILPLRGKILNVE+ + N EI+ +I ALG GV G++F+ E RYHK
Sbjct: 438 KQGRDRMYQAILPLRGKILNVEKARLDKILSNAEIRAMITALGTGV-GDEFRLEKARYHK 496
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
III+TDADVDGAHIRTLLLTFFYR+ + L ++G IY+ PPLY+V+ GK ++Y YDD EL
Sbjct: 497 IIIMTDADVDGAHIRTLLLTFFYRFMRPLLEKGYIYIAQPPLYRVQYGKTLKYAYDDKEL 556
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
K++ PSN ++QR+KGLGEM P QLWETT++PE R++ ++ +EDA EA+ +F LM
Sbjct: 557 TKIQGELPSNVKPALQRYKGLGEMNPEQLWETTMDPENRVVLKVHLEDAIEADQIFEMLM 616
Query: 483 GARVDTRKELIQNAANLV-NLD 503
G RV+ R++ IQ A+ V NLD
Sbjct: 617 GDRVEPRRDFIQENAHYVQNLD 638
>gi|239825589|ref|YP_002948213.1| DNA gyrase subunit B [Geobacillus sp. WCH70]
gi|239805882|gb|ACS22947.1| DNA gyrase, B subunit [Geobacillus sp. WCH70]
Length = 640
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 260/506 (51%), Positives = 350/506 (69%), Gaps = 17/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P T L + DR GT +RF PD ++FT +FD+ T+A R+RELAF
Sbjct: 146 HYQKYQRGVPCTDLEV----IGETDRTGTTVRFKPDPEIFTETTEFDYETLATRLRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN L I L ED E N+ NEY + GG++ YV+ LN ++ LH+ ++G R DG
Sbjct: 202 LNRGLKITL--EDKRVE-NRKNEYHYEGGIKSYVKHLNRTREVLHEEPIYIIGER---DG 255
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++ALQ+ +D+YS + + N+I T +GGTH G K +LTR +N +K + +KD D
Sbjct: 256 IYVEIALQY-NDSYSSNIYSFVNNIHTHEGGTHESGFKTALTRIINDYARKHQILKDNDP 314
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE VREGLT I+S++ P+P+FEGQTKT+LGN + R V D E +L +P +
Sbjct: 315 NLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARAVTDAIFSEQFETFLLENPTIA 374
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K + A +A LAAK+AR+L R+KS L S+LPGKLADCSS P SE+++VEGDSA
Sbjct: 375 RKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYVVEGDSA 434
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILPLRGKI+NVE+ + N E++ +I ALG G+ GEDF
Sbjct: 435 GGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAIITALGTGI-GEDFDITKA 493
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHKIII+TDADVDGAHIRTLLLTFFYRY + + G +Y+ PPLYK+E+GKQV+Y Y+
Sbjct: 494 RYHKIIIMTDADVDGAHIRTLLLTFFYRYMREFIERGYVYIAQPPLYKIEQGKQVKYAYN 553
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D +L+K+ + P N +IQR+KGLGEM P QLWETT+NPE R L Q+ ++DA EA+ F
Sbjct: 554 DRQLEKILAELPENPKPTIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDAIEADETF 613
Query: 479 SSLMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R++ I +NA + NLD
Sbjct: 614 EILMGDKVEPRRQFIEENARYVKNLD 639
>gi|374709302|ref|ZP_09713736.1| DNA gyrase subunit B [Sporolactobacillus inulinus CASD]
Length = 639
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 248/502 (49%), Positives = 346/502 (68%), Gaps = 10/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RGKP+ L + ++ GT F PD ++F FD++T+ R+RELAF
Sbjct: 146 YYQEYHRGKPLADLKI----IGDSEQTGTTTHFEPDPEIFKDTTTFDYDTLRVRVRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN + I++ ED E+ + + Y + GG+ YV++LN K+ +H+ + + DGI ++
Sbjct: 202 LNKNIRISI--EDRR-EEGKRDTYHYEGGIRSYVEFLNRSKEVIHEPIDLEGEKDGIKVE 258
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+A+Q+ S ++ + +AN+I T +GGTH G K +LTR +N +K++ +K D +L+G
Sbjct: 259 IAMQYNS-GFTGQLYSFANNIHTHEGGTHEYGFKVALTRVINDYARKNQLIKASDPNLTG 317
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+ VREGLT I+S++ P+P+FEGQTKT+LGN EVR + D E + YL +PDV I+
Sbjct: 318 DDVREGLTAIVSIKHPDPQFEGQTKTKLGNSEVRAITDTLFSEAFSRYLLENPDVARLIV 377
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K L A +A AAK+AR+L R+KS L SSLPGKLADCSS SE++IVEGDSAGGSA
Sbjct: 378 DKGLIASRARTAAKKARELTRRKSSLEVSSLPGKLADCSSKDASISELYIVEGDSAGGSA 437
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQGRDR FQAILPLRGKILNVE+ + N EI+ +I ALG G+ G++F E RYHK
Sbjct: 438 KQGRDRMFQAILPLRGKILNVEKARLDRILSNAEIRAMITALGTGI-GDEFNLEKARYHK 496
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
III+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPL++V+ GK + Y YDD +L
Sbjct: 497 IIIMTDADVDGAHIRTLLLTFFYRFMRPLLENGYVYIAQPPLFRVQYGKTLLYAYDDNDL 556
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
K+++S+ P N ++QR+KGLGEM P QLWETT++PE R++ Q+ +EDA EA+ F LM
Sbjct: 557 KRIQSNLPQNVKPALQRYKGLGEMNPEQLWETTMDPENRLVLQVNLEDAIEADQTFEMLM 616
Query: 483 GARVDTRKELIQ-NAANLVNLD 503
G RV+ R++ IQ NA NLD
Sbjct: 617 GDRVEPRRDFIQKNAVYAQNLD 638
>gi|335039151|ref|ZP_08532333.1| DNA topoisomerase IV, B subunit [Caldalkalibacillus thermarum
TA2.A1]
gi|334180961|gb|EGL83544.1| DNA topoisomerase IV, B subunit [Caldalkalibacillus thermarum
TA2.A1]
Length = 637
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/502 (48%), Positives = 342/502 (68%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG P L + R GT I F PD ++F +FD+ T+ R+RE+AF
Sbjct: 143 YYQRYRRGVPEFDLKV----IGQTARTGTTITFKPDPEIFEETTEFDYETLRNRLREIAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN L I + D E+ Q + + + GG+ +V+++N ++ LH+ + + +G+ ++
Sbjct: 199 LNKGLKIIFK--DERMEQAQPDIFVYEGGIASFVEYINRAREVLHEPIYIEDEKEGVYVE 256
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+ALQ+ +D+++ + +AN+I T +GGTH G K++LTR +N G+K +K+ D +L+G
Sbjct: 257 IALQY-NDSFASNLFSFANNIHTYEGGTHESGFKSALTRVINEYGRKQGLIKETDNNLTG 315
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+ VREGLT +ISV++P+P+FEGQTKT+LGN EVR + + ++ +L +P V IL
Sbjct: 316 DDVREGLTAVISVKIPDPQFEGQTKTKLGNSEVRGITENVFAKHFFTFLNENPSVAKKIL 375
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K+L A +A AAK+AR+L R+K+ L SSLPGKLADCSS P SE++IVEGDSAGGSA
Sbjct: 376 EKALMAQRAREAAKKARELTRRKNALEVSSLPGKLADCSSRDPSISELYIVEGDSAGGSA 435
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQGRDR FQAILPLRGKI+NVE+ + N EI+ +I ALG G+ G++F RYHK
Sbjct: 436 KQGRDRHFQAILPLRGKIINVEKARLDKILSNNEIRAIITALGTGI-GDEFDINKARYHK 494
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
+II+TDADVDGAHIRTLLLTFFYRY K L + G +Y+ PPLYK+ +GK+V Y Y D EL
Sbjct: 495 VIIMTDADVDGAHIRTLLLTFFYRYMKPLIERGYVYIAQPPLYKITQGKKVLYAYSDREL 554
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
++ P N +IQR+KGLGEM P QLWETT++PE R L Q+ + DA EA+ +F +LM
Sbjct: 555 ERKLKELPDNPKPTIQRYKGLGEMNPTQLWETTMDPESRTLLQVSLTDAVEADAIFETLM 614
Query: 483 GARVDTRKELIQNAANLV-NLD 503
G +V+ R+E IQ A V NLD
Sbjct: 615 GDQVEPRREFIQQHAKYVRNLD 636
>gi|315659991|ref|ZP_07912849.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
lugdunensis M23590]
gi|385782961|ref|YP_005759134.1| DNA gyrase subunit B [Staphylococcus lugdunensis N920143]
gi|418415558|ref|ZP_12988763.1| DNA gyrase subunit B [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|418635480|ref|ZP_13197855.1| DNA gyrase, B subunit [Staphylococcus lugdunensis VCU139]
gi|315494892|gb|EFU83229.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
lugdunensis M23590]
gi|339893217|emb|CCB52398.1| DNA gyrase subunit B [Staphylococcus lugdunensis N920143]
gi|374841747|gb|EHS05203.1| DNA gyrase, B subunit [Staphylococcus lugdunensis VCU139]
gi|410875014|gb|EKS22944.1| DNA gyrase subunit B [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 644
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 250/502 (49%), Positives = 341/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V D+ GT IRF D ++FT +D++T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGETDKTGTVIRFKADSEIFTETTVYDYDTLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN ++I L+ E D E+ + + Y + GG++ YV+ +N +K+P+H+ + + D I I
Sbjct: 205 LNKGISITLKDERDDEEQRE-DTYHYEGGIKSYVELMNENKEPIHEEPIYIHQMKDDIEI 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G KSK +K+ LS
Sbjct: 264 EIAIQYNS-GYATNLLSYANNIHTYEGGTHEDGFKRALTRVLNSYGTKSKIIKEDKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ EY +L +P+V I
Sbjct: 323 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEYFERFLYENPNVARII 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS P+ESEIFIVEGDSAGGS
Sbjct: 383 VEKGIMASRARVAAKKAREVTRRKSHLEISSLPGKLADCSSKNPDESEIFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K+GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 443 TKEGRDSRTQAILPLRGKILNVEKSRLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPL+K+ +GKQ Y ++D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLFKLTQGKQKYYVFNDKE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS + I R+KGLGEM QLWETT+NP+ RM+ Q+ ++DA EA+ F L
Sbjct: 562 LDKLKSELSPTPKWQISRYKGLGEMNADQLWETTMNPDNRMMLQVRLDDAIEADKTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A LD
Sbjct: 622 MGDVVENRRQFIEDNAVYATLD 643
>gi|317126747|ref|YP_004093029.1| DNA gyrase subunit beta [Bacillus cellulosilyticus DSM 2522]
gi|315471695|gb|ADU28298.1| DNA gyrase, B subunit [Bacillus cellulosilyticus DSM 2522]
Length = 640
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/503 (48%), Positives = 344/503 (68%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q + RG P L + D+ GT I+F PD ++FT ++D++T+A R+RELAF
Sbjct: 146 HYQMFERGVPSADLKV----IGETDKTGTIIKFKPDNEIFTETTEYDYDTLANRLRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITI 121
LN L I + + +D +K EYF+ GG+ +V+ LN K+P+H+ F + DGI++
Sbjct: 202 LNRGLRILISDKRNDGKKA---EYFYEGGISSFVEHLNRTKEPIHEPPVFIESEKDGISV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+++ + +AN+I T +GGTH G K +LTR +N +K+ K+ D +L
Sbjct: 259 EIAMQY-NDSFASNLYSFANNINTHEGGTHESGFKTALTRVINDYARKNSLFKETDPNLI 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IISV++P+P+FEGQTKT+LGN E R + D E++ +Y+ +P+V I
Sbjct: 318 GDDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSLFSEHMAKYMAENPNVARKI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A AAK+AR+L R+KS L SSLPGKLADCSS SE++IVEGDSAGGS
Sbjct: 378 VEKGIMASRARDAAKKARELTRRKSALEVSSLPGKLADCSSKDATISELYIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++ +I ALG G+ G DF RYH
Sbjct: 438 AKQGRDRHFQAILPLRGKILNVEKSRLDKILSNNEVRAIITALGTGIGG-DFDISKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYRY + L +EG +Y+ PPL+K+++GK VQY Y++ E
Sbjct: 497 KIIIMTDADVDGAHIRTLLLTFFYRYMRPLLEEGYVYIAQPPLFKIQQGKTVQYAYNEKE 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
++++ +QR+KGLGEM P QLWETT++P R Q+ +EDA A+ F +L
Sbjct: 557 MERIIKELAETPKPGLQRYKGLGEMNPTQLWETTMDPSTRTTLQVTLEDAMVADETFETL 616
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+E IQ NA + NLD
Sbjct: 617 MGDKVEPRREFIQANAQYVKNLD 639
>gi|311032261|ref|ZP_07710351.1| DNA gyrase subunit B [Bacillus sp. m3-13]
Length = 636
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 248/503 (49%), Positives = 344/503 (68%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q++++G P L + D GT I F PD+++FT ++D++T+A R+RELAF
Sbjct: 141 HYQQFNKGVPNEDLKI----IGETDVTGTIIHFVPDEEIFTETKEYDYDTLAHRLRELAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITI 121
LN + I + ED E + NEY + GG+ YV+ LN K+ +H+ V F + DGI+I
Sbjct: 197 LNKGIRITI--EDKREETPKKNEYHYEGGIASYVEHLNRTKEVIHEEVVFVEGEKDGISI 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + +AN+I T +GGTH G K +LTR +N +K+ KD D +L+
Sbjct: 255 EVALQY-NDSYTSNLYSFANNISTYEGGTHESGFKTALTRVINDYARKNNIFKDADSNLT 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT I+S++ P+P+FEGQTKT+LGN E R V D E +L +P I
Sbjct: 314 GEDVREGLTAIVSIKHPDPQFEGQTKTKLGNSEARTVTDSVFTEKFEGFLLENPSAARKI 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI++VEGDSAGGS
Sbjct: 374 VEKGLMASRARMAAKKARELTRRKSALEISSLPGKLADCSSKDPSISEIYVVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKI+NVE+ + N E++ +I ALG G+ GEDF RYH
Sbjct: 434 AKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAIITALGTGI-GEDFDISRARYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPLYK+++GK+++Y Y+D +
Sbjct: 493 KIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLYKIQQGKKIEYAYNDRQ 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ ++ IQR+KGLGEM P QLWETT++P R L Q+ ++DA EA+ F L
Sbjct: 553 LEEILATMSDQPKAGIQRYKGLGEMNPEQLWETTMDPVSRTLLQVSLQDAIEADETFEIL 612
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R+ IQ+ A V NLD
Sbjct: 613 MGDKVEPRRNFIQDNARYVKNLD 635
>gi|289551838|ref|YP_003472742.1| DNA gyrase subunit B [Staphylococcus lugdunensis HKU09-01]
gi|289181369|gb|ADC88614.1| DNA gyrase subunit B [Staphylococcus lugdunensis HKU09-01]
Length = 640
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 250/502 (49%), Positives = 341/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V D+ GT IRF D ++FT +D++T+ RIRELAF
Sbjct: 145 YHQAYKKGVPQFDLK----EVGETDKTGTVIRFKADSEIFTETTVYDYDTLQKRIRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN ++I L+ E D E+ + + Y + GG++ YV+ +N +K+P+H+ + + D I I
Sbjct: 201 LNKGISITLKDERDDEEQRE-DTYHYEGGIKSYVELMNENKEPIHEEPIYIHQMKDDIEI 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G KSK +K+ LS
Sbjct: 260 EIAIQYNS-GYATNLLSYANNIHTYEGGTHEDGFKRALTRVLNSYGTKSKIIKEDKDRLS 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ EY +L +P+V I
Sbjct: 319 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEYFERFLYENPNVARII 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS P+ESEIFIVEGDSAGGS
Sbjct: 379 VEKGIMASRARVAAKKAREVTRRKSHLEISSLPGKLADCSSKNPDESEIFIVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K+GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 439 TKEGRDSRTQAILPLRGKILNVEKSRLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPL+K+ +GKQ Y ++D E
Sbjct: 498 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLFKLTQGKQKYYVFNDKE 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS + I R+KGLGEM QLWETT+NP+ RM+ Q+ ++DA EA+ F L
Sbjct: 558 LDKLKSELSPTPKWQISRYKGLGEMNADQLWETTMNPDNRMMLQVRLDDAIEADKTFEML 617
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A LD
Sbjct: 618 MGDVVENRRQFIEDNAVYATLD 639
>gi|345304552|ref|YP_004826454.1| DNA gyrase subunit B [Rhodothermus marinus SG0.5JP17-172]
gi|345113785|gb|AEN74617.1| DNA gyrase, B subunit [Rhodothermus marinus SG0.5JP17-172]
Length = 649
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 249/508 (49%), Positives = 353/508 (69%), Gaps = 12/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y+ GKP T+ V P+ + GT ++FWPD +F T ++F +T+A R+RELA+
Sbjct: 146 WRQTYAYGKP-TSPVERVRPMREDEETGTIVQFWPDPTIFKT-VEFRFDTLAERLRELAY 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I++ + E +Y EY+F GGL E+VQ+L+ + P+HD V+ + D + +
Sbjct: 204 LNRGVRISIEDRREEDESLRYEEYYFEGGLVEFVQYLDETRTPIHDEVIYIAGEADDVVV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++AL++ +D Y++ +L + N+I T +GGTH+ G + +LTRTL + +K+ +K+ LS
Sbjct: 264 EVALRY-NDGYAENVLSFVNNINTHEGGTHVAGFRTALTRTLKAYAEKNNLLKNFKGELS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT +ISV+VP P+FEGQTKT+LGN EV+ +V V E+L+ +LE HP I
Sbjct: 323 GEDFREGLTAVISVKVPEPQFEGQTKTKLGNSEVQGIVAGIVSEHLSRWLEDHPREARRI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K + A +A +AA++AR+LV++K+ L SSLPGKLADC+S P + E+F+VEGDSAGGS
Sbjct: 383 LDKVILAAQARVAARKARELVQRKNALNGSSLPGKLADCASRDPSKCELFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKKEALR 359
AKQ R+R FQAILPLRGKILNVE+ + +NEEI+N++ ALG G+ EDF LR
Sbjct: 443 AKQARNREFQAILPLRGKILNVEKARLDKILENEEIRNIVTALGTGLATTEEDFDLSKLR 502
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YH+III+TDADVDGAHIRTLLLTFFYR + L + G IY+ +PPLY+V+ GK +Y + D
Sbjct: 503 YHRIIIMTDADVDGAHIRTLLLTFFYRQLRPLVEGGYIYIALPPLYRVKVGKTERYAWSD 562
Query: 420 AELKKVKSSF----PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+++ P A+ IQR+KGLGEM P QLWETT+NPE R+L+Q+ +EDAA A+
Sbjct: 563 EELRQIVEELTDGQPQRAV--IQRYKGLGEMNPEQLWETTMNPETRILQQVTVEDAAAAD 620
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+FS LMG V+ R++ I+ A LD
Sbjct: 621 RIFSILMGDAVEPRRKFIERNARYATLD 648
>gi|162606284|ref|XP_001713657.1| DNA gyrase subunit B [Guillardia theta]
gi|13794577|gb|AAK39952.1|AF165818_160 DNA gyrase subunit B [Guillardia theta]
Length = 684
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 249/509 (48%), Positives = 348/509 (68%), Gaps = 13/509 (2%)
Query: 6 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 65
++ RGK ++ C++ GT I F PD Q+F + FD I GR+ ELAFLN
Sbjct: 182 RFVRGKKISE--CNISSFKKNIINGTTINFKPDYQIFFSEFDFDSYVIGGRLNELAFLNS 239
Query: 66 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLAL 125
L + L ED + + + + GG+ EY+ + +KK LH+ + K + I++
Sbjct: 240 NLKLLL--EDRRSKIIKSSLFLHDGGIMEYINEMTINKKRLHNPIILSKIFNNSQIEIGF 297
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
W S+ Y + +L + N+IRT++GGTH++G K +T+ +N L KK K+K S+SGE +
Sbjct: 298 VWSSEQYQENILSFVNNIRTVEGGTHVDGFKQGITKLVNLLSKKKIKSKEKLNSISGEFI 357
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV-QEYLTEYLELHPDVLDSILSK 244
REGLTC+I+V+ PEFEGQ K++LGNP+++ +V+ + +E ++E + ++L+ +L K
Sbjct: 358 REGLTCLINVKTSEPEFEGQIKSKLGNPDIKFLVENLIKEEGEIHFIENNSNLLNIVLEK 417
Query: 245 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 304
++SA+ A A+K+A++LVR+KS+L +LPGKL+DCS P+ SEIFIVEGDSAGGSAKQ
Sbjct: 418 AISAMNAYEASKKAKELVRKKSILEGITLPGKLSDCSEKNPQFSEIFIVEGDSAGGSAKQ 477
Query: 305 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 364
RDRRFQAILPLRGKI+N+E+ DE +Y N EIQ+LI ALGLGV+G D LRYHKII
Sbjct: 478 ARDRRFQAILPLRGKIINIEKNDEKKIYNNTEIQSLISALGLGVRGNDEDLSNLRYHKII 537
Query: 365 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE------RGKQVQYCYD 418
I+TDADVDGAHIRTLLLTFFYRYQK L D+G +Y+ PPLYK+E K QYCY
Sbjct: 538 IMTDADVDGAHIRTLLLTFFYRYQKELIDKGFVYIACPPLYKIENKKNKNLDKNTQYCYS 597
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+ EL+ + S N +IQRFKGLGEMMP QLW+TT++PE R+LK++ + DA A+ +F
Sbjct: 598 EGELEYIIQSSHFNK--NIQRFKGLGEMMPEQLWKTTMSPEMRILKKIKLSDAKRADKIF 655
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
LMG++V RK+ IQ A+L+ +D LDI
Sbjct: 656 EVLMGSKVPERKKFIQIQASLIKIDSLDI 684
>gi|399949942|gb|AFP65598.1| gyrB [Chroomonas mesostigmatica CCMP1168]
Length = 690
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 255/507 (50%), Positives = 352/507 (69%), Gaps = 10/507 (1%)
Query: 6 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 65
++ RGK + + + +S + GT + F PD Q+F+ + +D I R+ ELAFLN
Sbjct: 187 RFVRGKTIGEIKINQKSRNSLEINGTSVNFKPDFQIFSGSFVYDSFIIGERLNELAFLNS 246
Query: 66 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLAL 125
L + + ED K + + + +AGG+ EY+ L+ K P+H ++ K+ G+ + +AL
Sbjct: 247 DLKLII--EDRRKNKIKKSIFKYAGGISEYIIALSKKKSPIHPIINIDKEFKGMNMQIAL 304
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
QW + S+ +L + N+I+T +GGTH++ +K LTRTLN G+KS K+ +LSG+ +
Sbjct: 305 QWTKEHSSENILSFVNNIKTNEGGTHLDSLKVVLTRTLNYFGRKSGKFKENFPNLSGDFI 364
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLEL-HPDVLDSILSK 244
REGL IISV++P PEFEGQTK++LGNPE+R V+D V YL E+ E+ +PD SIL K
Sbjct: 365 REGLFGIISVKIPEPEFEGQTKSKLGNPEIRGVIDTVVGNYLKEFFEIQNPDACFSILEK 424
Query: 245 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 304
+++A +AA AAK+A++L+R+KS L +LPGKLADCS P+ESEIFIVEGDSAGGSAKQ
Sbjct: 425 AIAAFQAAEAAKKAKELIRRKSALEFITLPGKLADCSIKNPKESEIFIVEGDSAGGSAKQ 484
Query: 305 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 364
RDR FQAILPLRGKI+N+E+ DE +YKN EIQ LI ALGLG +G+ FK + LRY +II
Sbjct: 485 ARDRMFQAILPLRGKIINIEKTDETKIYKNTEIQALISALGLGTRGDLFKIDQLRYRRII 544
Query: 365 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVER-GKQVQ----YCYDD 419
I+TDADVDGAHIRTLLLTFFYRYQ+ L + G +Y+ PPLYK+E GK + YCY D
Sbjct: 545 IMTDADVDGAHIRTLLLTFFYRYQRKLIENGFVYIACPPLYKIEDVGKNKKNFKNYCYSD 604
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+ S ++QRFKGLGEMMP QLWETT+NP R+LK++ + D +A+ +F+
Sbjct: 605 GELEFFMSRMSKKI--NVQRFKGLGEMMPEQLWETTMNPSTRILKKVEVIDLIKADRIFN 662
Query: 480 SLMGARVDTRKELIQNAANLVNLDHLD 506
LMG +V RKE IQ A+ + L+++D
Sbjct: 663 VLMGDKVFARKEFIQIHADKMRLENID 689
>gi|365155917|ref|ZP_09352259.1| DNA gyrase subunit B [Bacillus smithii 7_3_47FAA]
gi|363627842|gb|EHL78686.1| DNA gyrase subunit B [Bacillus smithii 7_3_47FAA]
Length = 643
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 260/506 (51%), Positives = 346/506 (68%), Gaps = 16/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+QKY RG PV L + DR GT + F PD ++FT FD++ +A RIRELAF
Sbjct: 148 YYQKYRRGVPVEDLKT----IGHTDRTGTTVHFKPDPEIFTETTVFDYDVLATRIRELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I + ED + + NEY + GG++ YV LN K+ LH+ V G + D
Sbjct: 204 LNRNIKITI--EDRREGQKRKNEYHYEGGIKSYVAHLNRTKEVLHEEPIYVEGLKDD--- 258
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++ALQ+ ++ +S + +AN+I T +GGTH G K +LTR +N +K+ +KD D
Sbjct: 259 IQVEIALQY-NEGFSSNIYSFANNIHTYEGGTHESGFKTALTRVINDYARKNGLIKDSDQ 317
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSGE VREGLT I+S++ PNP+FEGQTKT+LGN E R V D E+ YL +P V
Sbjct: 318 NLSGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTVTDALFSEHFETYLLENPSVA 377
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K L A +A LAAK+AR+L R+KS L SSLPGKLADCSS P SE+FIVEGDSA
Sbjct: 378 RKIVEKGLMAARARLAAKKARELTRRKSALEVSSLPGKLADCSSRDPSISELFIVEGDSA 437
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILPLRGKILNVE+ + N EI+ +I ALG G+ GE+F
Sbjct: 438 GGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEIRMIITALGTGI-GEEFDISKA 496
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHK++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV +GK+++Y Y+
Sbjct: 497 RYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEAGYVYIAQPPLYKVSQGKRIEYAYN 556
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D +L ++ SS P + IQR+KGLGEM P QLWETT++PE+R + Q+ +EDA EA+ F
Sbjct: 557 DRQLDEILSSLPESPKPGIQRYKGLGEMNPEQLWETTMDPEKRAMLQVSLEDAIEADETF 616
Query: 479 SSLMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R++ I +NA ++ NLD
Sbjct: 617 EMLMGDKVEPRRQFIEENALHVKNLD 642
>gi|268318257|ref|YP_003291976.1| DNA gyrase subunit B [Rhodothermus marinus DSM 4252]
gi|262335791|gb|ACY49588.1| DNA gyrase, B subunit [Rhodothermus marinus DSM 4252]
Length = 649
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 248/508 (48%), Positives = 353/508 (69%), Gaps = 12/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y+ GKP T+ V P+ + GT ++FWPD +F T ++F +T+A R+RELA+
Sbjct: 146 WRQTYAYGKP-TSPVERVRPMREDEETGTIVQFWPDPTIFKT-VEFRFDTLAERLRELAY 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I++ + E +Y EY+F GGL E+VQ+L+ + P+HD V+ + D + +
Sbjct: 204 LNRGVRISIEDRREEDESLRYEEYYFEGGLVEFVQYLDETRTPIHDEVIYIAGEADDVVV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++AL++ +D Y++ +L + N+I T +GGTH+ G + +LTRTL + +K+ +K+ LS
Sbjct: 264 EVALRY-NDGYAENVLSFVNNINTHEGGTHVAGFRTALTRTLKAYAEKNNLLKNFKGELS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT +ISV+VP P+FEGQTKT+LGN EV+ +V V E+L+ +LE HP I
Sbjct: 323 GEDFREGLTAVISVKVPEPQFEGQTKTKLGNSEVQGIVAGIVSEHLSRWLEDHPREARRI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K + A +A +AA++AR+LV++K+ L SSLPGKLADC+S P + E+F+VEGDSAGGS
Sbjct: 383 LDKVILAAQARVAARKARELVQRKNALNGSSLPGKLADCASRDPSKCELFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKKEALR 359
AKQ R+R FQAILPLRGKILNVE+ + +N+EI+N++ ALG G+ EDF LR
Sbjct: 443 AKQARNREFQAILPLRGKILNVEKARLDKILENDEIRNIVTALGTGLATTEEDFDLSKLR 502
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YH+III+TDADVDGAHIRTLLLTFFYR + L + G IY+ +PPLY+V+ GK +Y + D
Sbjct: 503 YHRIIIMTDADVDGAHIRTLLLTFFYRQLRPLVEGGYIYIALPPLYRVKVGKTERYAWSD 562
Query: 420 AELKKVKSSF----PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+++ P A+ IQR+KGLGEM P QLWETT+NPE R+L+Q+ +EDAA A+
Sbjct: 563 EELRQIVEELTDGQPQRAV--IQRYKGLGEMNPEQLWETTMNPETRILQQVTVEDAAAAD 620
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+FS LMG V+ R++ I+ A LD
Sbjct: 621 RIFSILMGDAVEPRRKFIERNARYATLD 648
>gi|408355369|ref|YP_006843900.1| DNA gyrase subunit B [Amphibacillus xylanus NBRC 15112]
gi|407726140|dbj|BAM46138.1| DNA gyrase subunit B [Amphibacillus xylanus NBRC 15112]
Length = 640
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/502 (48%), Positives = 340/502 (67%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ + RG L + + D GT+I F PD +FT +FD+ T+ RIRELAF
Sbjct: 146 YYLDFKRG----VLNTEIKVIGQTDTTGTKIHFSPDPDIFTETTEFDYETLLYRIRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN K+ I++ ED K + +++ GG++EYV+++N K+ LH+ K+ + I ++
Sbjct: 202 LNKKIKISI--EDKRKGKERKQTFYYEGGIKEYVEYMNRSKEVLHETFFAEKEEEDIIVE 259
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+ALQ+ S YS + +AN+I T +GG H G K +LTR +N +K+K KD D +L+G
Sbjct: 260 VALQYNS-GYSSNIYSFANNIHTHEGGMHESGFKTALTRVINDYARKTKIFKDNDENLTG 318
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+ VREG+T I+S++ P+P+FEGQTKT+LGN E R + D + E ++L +PD I+
Sbjct: 319 DDVREGITAIVSIKHPDPQFEGQTKTKLGNSEARTITDSAFSEMFYKFLVENPDTAKIIV 378
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
+K + A +A +AAK+AR+L R+K L SSLPGKLADCSS SE++IVEGDSAGGSA
Sbjct: 379 NKGVMASRARMAAKKARELTRRKGALEISSLPGKLADCSSRDASISELYIVEGDSAGGSA 438
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQGRDR FQAILPLRGKILNVE+ + N EI+++I A+G G+ GE+F RYHK
Sbjct: 439 KQGRDRHFQAILPLRGKILNVEKARLDRILSNNEIRSMITAMGTGI-GEEFDITKARYHK 497
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
++I+TDADVDGAHIRTLLLTFFYR+ + L +EG IY+ PPLYKV++GK ++Y YDD+EL
Sbjct: 498 VVIMTDADVDGAHIRTLLLTFFYRFMRPLIEEGYIYIAQPPLYKVQQGKTIRYAYDDSEL 557
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
+ + P +QR+KGLGEM QLWETT++PE R L Q+ + DA EA+ +F LM
Sbjct: 558 ELILRELPKQPKPGLQRYKGLGEMNAEQLWETTMDPENRTLLQVKLNDAIEADQIFDMLM 617
Query: 483 GARVDTRKELIQ-NAANLVNLD 503
G +V+ R+E IQ NA + NLD
Sbjct: 618 GDKVEPRREFIQENAVYVKNLD 639
>gi|315925615|ref|ZP_07921825.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315621156|gb|EFV01127.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 668
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 248/503 (49%), Positives = 346/503 (68%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q + G + L V + +R GT+I F PD ++F T + +D++ + R+RELAF
Sbjct: 175 YRQTFEHGNKTSELDV----VGTTNRTGTKIYFKPDPEIFDTTV-YDYDVLEHRLRELAF 229
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I L+ D P + Q EY +AGG+ Y++++N +K PL+ + + K +D +
Sbjct: 230 LNKGVAITLK--DERPGQEQTGEYHYAGGIRSYIEYMNRNKDPLYPQITYYEKAMDEYAL 287
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+LA Q+ Y + + YAN+I T +GGTH+ G K++LTRT+N+ +K+ +K D +LS
Sbjct: 288 ELAFQYTR-GYQENIYSYANNIYTPEGGTHLNGFKSALTRTINNYARKAGLLKQNDKNLS 346
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT +IS+++ P+FEGQTKT+LGNPEV+ +V+ V E L+ +LE +P+V +I
Sbjct: 347 GDDVREGLTAVISIKLLEPQFEGQTKTKLGNPEVKGIVETIVNEELSNFLEENPNVAKAI 406
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++SA A +AAKRAR++ R+KS L ++SLPGKLADC P +SEIFIVEGDSAGGS
Sbjct: 407 VEKNISASHARMAAKRAREMTRRKSALDATSLPGKLADCREKDPAQSEIFIVEGDSAGGS 466
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRD R QAILPLRGKILNVE+ M ++ I+ +I A G G+ GEDF E RYH
Sbjct: 467 AKVGRDSRIQAILPLRGKILNVEKARLDRMLTSDTIKGMITAFGTGI-GEDFDIEKARYH 525
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYRY + L D G +Y+ PPLYKV GK V+Y YDDA+
Sbjct: 526 KIVIMTDADVDGAHIRTLLLTFFYRYMRGLIDHGYVYIAQPPLYKVSWGKHVEYAYDDAD 585
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + + + ++QR+KGLGEM QLWETT+NP+ R + ++ IEDA A+ +F+ L
Sbjct: 586 LNR-RLEDKDRSRVTLQRYKGLGEMDAEQLWETTMNPDTRTMLRVGIEDATYADEIFTML 644
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V RKE I+ NA + NLD
Sbjct: 645 MGDKVQPRKEFIERNAKKVQNLD 667
>gi|451342761|ref|ZP_21911844.1| DNA gyrase, B subunit [Eggerthia catenaformis OT 569 = DSM 20559]
gi|449338492|gb|EMD17637.1| DNA gyrase, B subunit [Eggerthia catenaformis OT 569 = DSM 20559]
Length = 641
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 252/504 (50%), Positives = 348/504 (69%), Gaps = 11/504 (2%)
Query: 3 YHQKYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
Y+Q++ G KPV TL+ + D +D GT + F D +FT +D + + R+RELA
Sbjct: 145 YYQRFEDGGKPVNTLS---IIGDCED-TGTTVLFKADPAIFTETTIYDFDILNQRVRELA 200
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
FLN L + + D EK + N Y + GGL EYV +LN +K LHD ++ + +DGI+
Sbjct: 201 FLNKGLKLII--ADEREEKIKENIYHYEGGLREYVAYLNKNKTALHDEIIDCEETIDGIS 258
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q+ +D+Y + +AN+I TI+GG H EG +A+LTR +N+ G+ S +K+KD +L
Sbjct: 259 VEVAMQY-NDSYQSNIYSFANNIHTIEGGMHEEGFRAALTRVINNYGRTSGALKEKDENL 317
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGE REGLT IISV+ PNP+FEGQTKT+LGN EVRK+ L ++L +PDV
Sbjct: 318 SGEDCREGLTAIISVKHPNPQFEGQTKTKLGNAEVRKISRTIFANALDKFLMENPDVAKI 377
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K A KA +AAKRAR++ R+K+ L + LPGKLADCSS P E EI+IVEGDSAGG
Sbjct: 378 IMDKVTLASKARMAAKRAREMTRRKTALDIADLPGKLADCSSKDPSECEIYIVEGDSAGG 437
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GRDRR QAILPLRGKILNVE+ + N EI+++I A G G+ GE+F + LRY
Sbjct: 438 SAKSGRDRRTQAILPLRGKILNVEKARLERILSNAEIRSMITAFGTGI-GEEFSLDKLRY 496
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKI+I+TDADVDG HIR L+LTF YRY + L +EG +Y PPLY + +GK+ Y Y D
Sbjct: 497 HKIVIMTDADVDGGHIRILMLTFLYRYLRPLIEEGYVYAAQPPLYLLRQGKEDHYLYSDY 556
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+K++ +A Y+IQR+KGLGEM P QLW+TT+NPE R+L ++ ++DA EA+++F
Sbjct: 557 ELEKLREELGKDAKYNIQRYKGLGEMNPEQLWDTTMNPEHRILNRINVDDAMEADLLFDM 616
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R++ I +NA + NLD
Sbjct: 617 LMGEKVEPRRDFIRENAKYVENLD 640
>gi|289523899|ref|ZP_06440753.1| DNA gyrase, B subunit [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289502555|gb|EFD23719.1| DNA gyrase, B subunit [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 645
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/505 (48%), Positives = 349/505 (69%), Gaps = 14/505 (2%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
ME+HQ+YSRG P C + PV DR GT++ F PD +F F + ++ R+RE+
Sbjct: 152 MEWHQRYSRGVP----QCELTPVGKADRTGTKVHFLPDDTIFEEK-DFSFDVLSSRLREI 206
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGI 119
AFL P L I L+ D N+ + + GG+ +V++LN DK PL + + + + D +
Sbjct: 207 AFLVPGLKIDLK----DLRNNKSVAFKYDGGVISFVEYLNRDKNPLFKEPIYIKGEKDDV 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ +D++ + + +AN I T++GGTH+ G + +LTR +N + ++ K +KDKD +
Sbjct: 263 LVEVALQY-NDSFQERVFAFANLIHTVEGGTHVVGFRTALTRAVNEMARRQKLLKDKDAN 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSG+ ++EGLT IISV++ P+FEGQTKT+LGN +VR +VD V + L +LE PD L
Sbjct: 322 LSGDDLKEGLTAIISVKLKEPQFEGQTKTKLGNSDVRGIVDSIVYDGLMAFLEEKPDCLR 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K++ A +A AAK+AR+LVR+KS LPGKLADCSS PEE E++IVEGDSAG
Sbjct: 382 PIVEKAIKARQARDAAKKARELVRRKSAFGGLDLPGKLADCSSKDPEECELYIVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGR+R FQAILPLRGKILNVE+ + N EI+ +I+ALG G+ GEDF LR
Sbjct: 442 GSAKQGRNRTFQAILPLRGKILNVEKARLDKVLSNAEIRTIIQALGCGI-GEDFDVNKLR 500
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YH++II+TDADVDGAHIRTLLL FFYR+ + + G +Y+ PPLY+V+ GK YCY D
Sbjct: 501 YHRVIIMTDADVDGAHIRTLLLAFFYRFMPGIIEGGHLYIAQPPLYRVQAGKSEYYCYSD 560
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+ + +N S+QR+KGLGEM P QLW+TT++P +R+LK++ +EDA A+ F+
Sbjct: 561 KELRNMADKL-ANKKISVQRYKGLGEMNPEQLWKTTMDPNERILKRVDVEDALAADEYFT 619
Query: 480 SLMGARVDTRKELIQNAANLV-NLD 503
LMG +V+ R+E I++ AN V NLD
Sbjct: 620 ILMGDKVEPRREFIESHANEVRNLD 644
>gi|319651104|ref|ZP_08005238.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2]
gi|317397274|gb|EFV77978.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2]
Length = 642
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 254/503 (50%), Positives = 345/503 (68%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+QK+ RG P L + D GT I F PD ++FT +++D+ T+A RIRELAF
Sbjct: 148 YYQKFERGVPSADLEV----IGETDHTGTTIHFKPDSEIFTETLEYDYETLANRIRELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN L I + + E+N+ +EY + GG++ YV+ LN K+ LH+ + + +GIT+
Sbjct: 204 LNRGLKITI---EDKREENKKSEYMYEGGIKSYVEHLNRTKEVLHEEPIYIDGEREGITV 260
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ +D ++ + +AN+I T +GGTH G K +LTR +N +K+ K+ D +LS
Sbjct: 261 EVSIQY-NDGFTSNIYSFANNIHTYEGGTHESGFKTALTRVINDYARKNGVFKESDANLS 319
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT I+SV+ P+P+FEGQTKT+LGN EVR D E L +++ +P V I
Sbjct: 320 GEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVRAATDTIFSEALEKFMLENPTVARKI 379
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A LAAK+AR+L R+KS L SSLPGKLADCSS P SE+++VEGDSAGGS
Sbjct: 380 VEKGLMAARARLAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELYVVEGDSAGGS 439
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++ +I A+G G+ GEDF RYH
Sbjct: 440 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITAIGTGI-GEDFDISRARYH 498
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPLYK+++GK+++Y Y+D E
Sbjct: 499 KIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEAGYIYIAQPPLYKIQQGKKIEYAYNDRE 558
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+ PS IQR+KGLGEM P QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 559 LDKILGELPSQPKPGIQRYKGLGEMNPGQLWETTMNPESRTLLQVNLEDAIEADETFEIL 618
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V+ R+ I +NA + NLD
Sbjct: 619 MGDKVEPRRNFIEENAVYVKNLD 641
>gi|373859274|ref|ZP_09602004.1| DNA gyrase, B subunit [Bacillus sp. 1NLA3E]
gi|372450943|gb|EHP24424.1| DNA gyrase, B subunit [Bacillus sp. 1NLA3E]
Length = 642
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 256/503 (50%), Positives = 348/503 (69%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q + RG P L V D GT I F PD +FT +++D++T+A R+RELAF
Sbjct: 148 YYQVFERGVPQADLAV----VGETDHTGTTIHFIPDATIFTETLEYDYDTLATRLRELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITI 121
LN + I + ED E N+ NEY + GG++ YV+ LN K +H+ F + DGITI
Sbjct: 204 LNKNIKITI--EDKRVE-NKKNEYIYEGGIKSYVEHLNRTKDVVHEEPIFIEGEKDGITI 260
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D+ALQ+ +++Y+ + +AN+I T +GGTH G K +LTR +N +K+ +K+ D +LS
Sbjct: 261 DVALQY-NESYTSNIYSFANNIHTYEGGTHEFGFKTALTRVINDYARKNGLIKENDTNLS 319
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IIS++ P+P+FEGQTKT+LGN EVR + D E+ ++L P V +
Sbjct: 320 GEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEVRTITDTIFSEHFEKFLLEDPGVARKV 379
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A LAAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAGGS
Sbjct: 380 VEKGLMAARARLAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGS 439
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++ +I A+G G+ GEDF RYH
Sbjct: 440 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAMITAIGTGI-GEDFDIARARYH 498
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+++Y Y+D E
Sbjct: 499 KVVIMTDADVDGAHIRTLLLTFFYRYMRQILEAGYVYIAQPPLYKVQQGKRIEYAYNDKE 558
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++V + P++ +IQR+KGLGEM P QLWETT++P R + Q+ +EDA EA+ F L
Sbjct: 559 LERVFAELPNSPKPNIQRYKGLGEMNPTQLWETTMDPSTRTMLQVSLEDAIEADETFEML 618
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 619 MGDKVEPRRNFIEANAQYVKNLD 641
>gi|393809327|gb|AFN25837.1| DNA gyrase subunit B [Staphylococcus hominis]
Length = 644
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 251/502 (50%), Positives = 341/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + S D+ GT IRF D ++F+ +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EIGSTDKTGTVIRFKADSEIFSETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN ++I LR E D E+ + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGISITLRDEREDEEQREDT-YHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +KD LS
Sbjct: 264 EIAIQYNS-GYATNLLSYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKDDKERLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++SV+ NP+FEGQTKT+LGN EVR++VD+ E+ +L +P+V I
Sbjct: 323 GEDTREGLTAVVSVKHGNPQFEGQTKTKLGNSEVRQIVDRLFSEHFERFLYENPNVARVI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS P+ESEIF+VEGDSAGGS
Sbjct: 383 VEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSKNPDESEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K+GRD + QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 443 TKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K+ + I R+KGLGEM QLWETT+NPE RM+ Q+ +EDA EA+ F L
Sbjct: 562 LDKLKAELNPTPKWQISRYKGLGEMNADQLWETTMNPENRMMLQVKLEDAVEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|418324495|ref|ZP_12935732.1| DNA gyrase, B subunit [Staphylococcus pettenkoferi VCU012]
gi|365225912|gb|EHM67148.1| DNA gyrase, B subunit [Staphylococcus pettenkoferi VCU012]
Length = 642
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 249/502 (49%), Positives = 336/502 (66%), Gaps = 6/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y RG P V+ D GT IRF D ++FT +D+ T+ RI+ELAF
Sbjct: 145 YHQAYERGVP--QFDLEVVGETDDDNTGTEIRFKADPEIFTETTVYDYETLQQRIKELAF 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN ++I LR E + E + N Y + GG++ YV+ LN +K+PLHD + + D I +
Sbjct: 203 LNKGISITLRDERDEDEVREDN-YHYEGGIKSYVEMLNENKEPLHDEPIYIHQTKDDIEV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S ++ +L YAN+I T +GGTH EG K +L+R LNS G +SK +KD LS
Sbjct: 262 EIALQYNS-GFATNLLTYANNIHTYEGGTHEEGFKRALSRILNSYGLQSKIIKDDKDKLS 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR++VD+ +L HP V I
Sbjct: 321 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDKLFSAQFERFLYEHPQVGRVI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS P+ESEIFIVEGDSAGGS
Sbjct: 381 VDKGIMASRARVAAKKAREVTRRKSALEVSSLPGKLADCSSKNPDESEIFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K+GRD QAILPLRGKILNVE+ + N EI+++I A G G+ GE F+ RYH
Sbjct: 441 TKEGRDSATQAILPLRGKILNVEKSRLDRILNNNEIRSMITAFGTGIGGE-FELSKARYH 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLYK+ +GK+ Y ++D E
Sbjct: 500 KIIIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGYVYIAQPPLYKLTQGKEKYYVFNDRE 559
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L +K+ +SI R+KGLGEM QLWETT+NP+ R + Q+ ++DA +A+ F L
Sbjct: 560 LDNLKAELNPTPKWSISRYKGLGEMNADQLWETTMNPDNRSMLQVTLDDAIDADQTFEML 619
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 620 MGDVVENRRQFIEDNAVYANLD 641
>gi|407796859|ref|ZP_11143810.1| DNA gyrase subunit B [Salimicrobium sp. MJ3]
gi|407018757|gb|EKE31478.1| DNA gyrase subunit B [Salimicrobium sp. MJ3]
Length = 643
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/503 (49%), Positives = 341/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ + G P V +D+ D+ GT+I F PD ++F ++D T+ R+RELAF
Sbjct: 148 YHQDFRHGVP----QKDVEEIDTTDKTGTQIHFKPDPEIFKEGQEYDFETLTTRLRELAF 203
Query: 63 LNPKLTIALRKEDSDPEK-NQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
LN LTI + ED E N E+++ GG+ YV+ LN+ ++ LH+ + + DGI+I
Sbjct: 204 LNRGLTITV--EDKREEHGNGKKEFYYEGGIISYVEHLNSSREVLHEPIYAEAEQDGISI 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+LALQ+ +D ++ + YAN+I T +GGTH G K LTR +N +K+ ++ D +L+
Sbjct: 262 ELALQY-NDGFASNIYSYANNIHTYEGGTHESGFKTGLTRVINDYARKNSMFRENDPNLT 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R V D E +++L +P+V I
Sbjct: 321 GDDVREGLTVIISIKHPDPQFEGQTKTKLGNSEARTVTDALFSENFSKFLLENPNVAKII 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKL+DC+S P ESE++IVEGDSAGGS
Sbjct: 381 VEKGLMASRARMAAKKARELTRRKSALEISNLPGKLSDCASKDPSESELYIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++ +I ALG GV GE+F RYH
Sbjct: 441 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRTMITALGSGV-GEEFDVSKARYH 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + L ++G +Y+ PPLY++++ K+ Y + D E
Sbjct: 500 KVVIMTDADVDGAHIRTLLLTFFYRYMRPLLEDGYVYIAQPPLYQIKQNKKEYYTFSDQE 559
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ + P+ IQR+KGLGEM P QLWETT+NPE R + Q+ +EDA A+ FS L
Sbjct: 560 LEEKLAEIPATPKPVIQRYKGLGEMNPEQLWETTMNPEGRTMLQVTLEDAIGADETFSML 619
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG V+ R+ IQ NA + NLD
Sbjct: 620 MGDAVEPRRNFIQENARYVQNLD 642
>gi|357419158|ref|YP_004932150.1| DNA gyrase subunit B [Thermovirga lienii DSM 17291]
gi|355396624|gb|AER66053.1| DNA gyrase subunit B [Thermovirga lienii DSM 17291]
Length = 635
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 243/504 (48%), Positives = 346/504 (68%), Gaps = 13/504 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E+ Q Y RGKPV+ L C +S +++GT I F PD ++F F + ++ R RE+A
Sbjct: 142 EWRQSYRRGKPVSELCCG----ESTNKRGTLIEFKPDGEIFEET-TFSWDILSSRFREMA 196
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGIT 120
FLNP LTI L+ S EK + + GG+ +V++LN K PL V + + DG++
Sbjct: 197 FLNPGLTIILKDRISGKEKT----FHYEGGISSFVEYLNKGKNPLFTPPVVVKGEKDGVS 252
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++ LQ+ +D+Y + + +AN I T++GGTH+ G + +LTR +N + +++K +KDKD +L
Sbjct: 253 VEIGLQY-NDSYLERVFAFANLIHTVEGGTHVSGFRTALTRAINEMARRNKLLKDKDPNL 311
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ ++EGLT +ISV++P P+FEGQTKT+LGN E++ +VD + L ++ P++L
Sbjct: 312 SGDDLKEGLTAVISVKLPEPQFEGQTKTKLGNGEIKGIVDSIFYDGLMVEIDERPEILKP 371
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
++ K++ A A AAK+AR+LVR+K+ L LPGKLADCSS PEESE+FIVEGDSAGG
Sbjct: 372 VVEKAIKARLAREAAKKARELVRRKTALAGLDLPGKLADCSSRNPEESELFIVEGDSAGG 431
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILPLRGKILNVE+ + N E++ +I+ALG G+ GEDF LRY
Sbjct: 432 SAKQGRDRHFQAILPLRGKILNVEKARMDKVLDNNEVRTIIQALGTGI-GEDFDISKLRY 490
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
H+I ++TDADVDG+HIRTLLLT FYR+ L + G +Y+ PPLY+V+ GK++ YC+ D
Sbjct: 491 HRIFLMTDADVDGSHIRTLLLTLFYRFMPELIERGHLYIAQPPLYRVQIGKEIHYCFSDK 550
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL ++ +IQR+KGLGEM P QLWETT++P R+ K++ IEDA A+ FS
Sbjct: 551 ELNNLRQKVGDGKKLNIQRYKGLGEMNPSQLWETTMDPATRVCKRIEIEDAVAADEYFSI 610
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG +V+ R+E I+ A V NLD
Sbjct: 611 LMGDKVEPRREFIEAHAREVRNLD 634
>gi|393809325|gb|AFN25836.1| DNA gyrase subunit B [Staphylococcus hominis]
Length = 644
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 250/502 (49%), Positives = 341/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + S D+ GT IRF D ++F+ +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EIGSTDKTGTVIRFKADSEIFSETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN ++I LR E D E+ + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGISITLRDEREDEEQREDT-YHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +KD LS
Sbjct: 264 EIAIQYNS-GYATNLLSYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKDDKERLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ NP+FEGQTKT+LGN EVR++VD+ E+ +L +P+V I
Sbjct: 323 GEDTREGLTAVVSIKHGNPQFEGQTKTKLGNSEVRQIVDRLFSEHFERFLYENPNVARII 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS P+ESEIF+VEGDSAGGS
Sbjct: 383 VEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSKNPDESEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K+GRD + QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 443 TKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K+ + I R+KGLGEM QLWETT+NPE RM+ Q+ +EDA EA+ F L
Sbjct: 562 LDKLKAELNPTPKWQISRYKGLGEMNADQLWETTMNPENRMMLQVKLEDAVEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|393809335|gb|AFN25841.1| DNA gyrase subunit B [Staphylococcus hominis]
Length = 644
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 250/502 (49%), Positives = 341/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + S D+ GT IRF D ++F+ +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EIGSTDKTGTVIRFKADSEIFSETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN ++I LR E D E+ + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGISITLRDEREDEEQREDT-YHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +KD LS
Sbjct: 264 EIAIQYNS-GYATNLLSYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKDDKERLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ NP+FEGQTKT+LGN EVR++VD+ E+ +L +P+V I
Sbjct: 323 GEDTREGLTAVVSIKHGNPQFEGQTKTKLGNSEVRQIVDRLFSEHFERFLYENPNVARII 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS P+ESEIF+VEGDSAGGS
Sbjct: 383 VEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSKNPDESEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K+GRD + QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 443 TKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K+ + I R+KGLGEM QLWETT+NPE RM+ Q+ +EDA EA+ F L
Sbjct: 562 LDKLKAELNPTPKWQISRYKGLGEMNADQLWETTMNPENRMMLQVKLEDAVEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|418618874|ref|ZP_13181726.1| DNA gyrase, B subunit [Staphylococcus hominis VCU122]
gi|374826443|gb|EHR90340.1| DNA gyrase, B subunit [Staphylococcus hominis VCU122]
Length = 640
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 250/502 (49%), Positives = 341/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + S D+ GT IRF D ++F+ +++ T+ RIRELAF
Sbjct: 145 YHQAYKKGVPQFDLK----EIGSTDKTGTVIRFKADSEIFSETTVYNYETLQKRIRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN ++I LR E D E+ + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 201 LNKGISITLRDEREDEEQREDT-YHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +KD LS
Sbjct: 260 EIAIQYNS-GYATNLLSYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKDDKERLS 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ NP+FEGQTKT+LGN EVR++VD+ E+ +L +P+V I
Sbjct: 319 GEDTREGLTAVVSIKHGNPQFEGQTKTKLGNSEVRQIVDRLFSEHFERFLYENPNVARII 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS P+ESEIF+VEGDSAGGS
Sbjct: 379 VEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSKNPDESEIFLVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K+GRD + QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 439 TKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 498 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K+ + I R+KGLGEM QLWETT+NPE RM+ Q+ +EDA EA+ F L
Sbjct: 558 LDKLKAELNPTPKWQISRYKGLGEMNADQLWETTMNPENRMMLQVKLEDAVEADQTFEML 617
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 618 MGDVVENRRQFIEDNAVYANLD 639
>gi|386712349|ref|YP_006178671.1| DNA gyrase subunit B [Halobacillus halophilus DSM 2266]
gi|384071904|emb|CCG43394.1| DNA gyrase subunit B [Halobacillus halophilus DSM 2266]
Length = 639
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 244/502 (48%), Positives = 339/502 (67%), Gaps = 10/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q + RG P L + + GTRI+F PD+Q+FT ++++ T+A R RELAF
Sbjct: 146 HYQAFHRGVPEEDLKV----IGDTEITGTRIQFKPDEQIFTETVEYNFETLATRTRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN LTI++ + +D E Y ++ GG+ YV+ LN ++ LH+ + D I+I+
Sbjct: 202 LNRGLTISIEDKRTDEEPVSY---YYEGGIRSYVEHLNRTREVLHEPFFIESEQDDISIE 258
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+ALQ+ +D ++ + YAN+I T +GGTH G K LTR +N +K+ KD D +L+G
Sbjct: 259 IALQY-NDGFASNLYSYANNIHTYEGGTHESGFKTGLTRVINDYARKNNMFKDMDPNLTG 317
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+ VREGLT IIS++ P+P+FEGQTKT+LGN E R V D E +++L +P++ ++
Sbjct: 318 DDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTVTDALFSEGFSKFLFENPNMARIVV 377
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K L A +A +AAK+AR+L R+K+ L S+LPGKLADCSS P SEI++VEGDSAGGSA
Sbjct: 378 EKGLMASRARMAAKKARELTRRKNALEVSNLPGKLADCSSKDPSISEIYVVEGDSAGGSA 437
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQGRDR FQAILPLRGKI+NVE+ + N E++ +I ALG G+ GEDF RYHK
Sbjct: 438 KQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAIITALGTGI-GEDFDISKARYHK 496
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
I+I+TDADVDGAHIRTLLLTFFYRY + L + G IY+ PPLYK+++GK V Y Y D +L
Sbjct: 497 IVIMTDADVDGAHIRTLLLTFFYRYMRPLIEHGYIYIAQPPLYKIQQGKAVYYTYSDKQL 556
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
+ + P++ +QR+KGLGEM P QLWETT++PE R L Q+ +EDA A+ F LM
Sbjct: 557 DTMLAELPNSPKPGVQRYKGLGEMNPEQLWETTMDPETRTLLQVSLEDAIGADETFDILM 616
Query: 483 GARVDTRKELI-QNAANLVNLD 503
G +V+ R+ I +NA + NLD
Sbjct: 617 GDKVEPRRNFIEENAQYVQNLD 638
>gi|261417505|ref|YP_003251187.1| DNA gyrase subunit B [Geobacillus sp. Y412MC61]
gi|261373962|gb|ACX76705.1| DNA gyrase, B subunit [Geobacillus sp. Y412MC61]
Length = 640
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 255/506 (50%), Positives = 344/506 (67%), Gaps = 17/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG+P T L + DR GT RF PD ++FT +FD+ T+A R+RELAF
Sbjct: 146 HYQRYERGEPCTDLQV----IGETDRTGTTTRFKPDPEIFTETTEFDYETLATRLRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN L I L E D KN EY + GG+ YV+ LN ++ LH+ + G R DG
Sbjct: 202 LNRGLKITLTDERVDSRKN---EYVYEGGIRSYVRHLNRTREVLHEEPIYIAGER---DG 255
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++ALQ+ +D Y+ + + N+I T +GGTH G K +LTR +N +K + K+ D
Sbjct: 256 IAVEIALQY-NDGYTSNIYSFVNNIHTHEGGTHESGFKMALTRIINDYARKQQIFKENDA 314
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE VREGLT I+S++ P+P+FEGQTKT+LGN + R V D E +L +P +
Sbjct: 315 NLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLENPTIA 374
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K + A +A LAAK+AR+L R+KS L S+LPGKLADCSS P SE+++VEGDSA
Sbjct: 375 RKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCSSRDPSISELYVVEGDSA 434
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILPLRGKILNVE+ + N E++ +I ALG G+ GE+F
Sbjct: 435 GGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITALGTGI-GEEFDISKA 493
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHK+II+TDADVDGAHIRTLLLTFFYRY + L + G IY+ PPLYK+E+GKQV+Y Y+
Sbjct: 494 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYIYIAQPPLYKIEQGKQVRYAYN 553
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D +L+K+ + P +IQR+KGLGEM P QLWETT+NPE R L Q+ ++DA +A+ F
Sbjct: 554 DRQLEKILAELPDQPKPTIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDAIDADETF 613
Query: 479 SSLMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R++ I +NA + NLD
Sbjct: 614 EILMGDKVEPRRQFIEENARYVKNLD 639
>gi|375006808|ref|YP_004980435.1| DNA gyrase subunit B [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359285651|gb|AEV17335.1| DNA gyrase subunit B [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 640
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 255/506 (50%), Positives = 344/506 (67%), Gaps = 17/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG+P T L + DR GT RF PD ++FT +FD+ T+A R+RELAF
Sbjct: 146 HYQRYERGEPCTDLQV----IGETDRTGTTTRFKPDPEIFTETTEFDYETLATRLRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN L I L E D KN EY + GG+ YV+ LN ++ LH+ + G R DG
Sbjct: 202 LNRGLKITLTDERVDSRKN---EYVYEGGIRSYVRHLNRTREVLHEEPIYIAGER---DG 255
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++ALQ+ +D Y+ + + N+I T +GGTH G K +LTR +N +K + K+ D
Sbjct: 256 IAVEIALQY-NDGYTSNIYSFVNNIHTHEGGTHESGFKMALTRIINDYARKQQIFKENDT 314
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE VREGLT I+S++ P+P+FEGQTKT+LGN + R V D E +L +P +
Sbjct: 315 NLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLENPTIA 374
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K + A +A LAAK+AR+L R+KS L S+LPGKLADCSS P SE+++VEGDSA
Sbjct: 375 RKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCSSRDPSISELYVVEGDSA 434
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILPLRGKILNVE+ + N E++ +I ALG G+ GE+F
Sbjct: 435 GGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITALGTGI-GEEFDISKA 493
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHK+II+TDADVDGAHIRTLLLTFFYRY + L + G IY+ PPLYK+E+GKQV+Y Y+
Sbjct: 494 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYIYIAQPPLYKIEQGKQVRYAYN 553
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D +L+K+ + P +IQR+KGLGEM P QLWETT+NPE R L Q+ ++DA +A+ F
Sbjct: 554 DRQLEKILAELPDQPKPTIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDAIDADETF 613
Query: 479 SSLMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R++ I +NA + NLD
Sbjct: 614 EILMGDKVEPRRQFIEENARYVKNLD 639
>gi|78043837|ref|YP_361487.1| DNA gyrase subunit B [Carboxydothermus hydrogenoformans Z-2901]
gi|77995952|gb|ABB14851.1| DNA gyrase, B subunit [Carboxydothermus hydrogenoformans Z-2901]
Length = 635
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/503 (49%), Positives = 359/503 (71%), Gaps = 15/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+QK+SRG+P+T L + GT I F PD ++F T ++F+++T+A R+ EL++
Sbjct: 145 YYQKFSRGEPITELKI----IGKSKSTGTIITFKPDAEIFET-VEFNYDTLAKRLLELSY 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
LN + I L+ E + E E F +GG+++Y+++LN +K+PLH ++ F K+ D + +
Sbjct: 200 LNKNVKIILKDERINKE-----EIFEHSGGIKDYLKYLNKNKEPLHKIIYFEKEKDEVVV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+C +++S+ +L + N+I T +GGTH G K +LTR +N KK +K+ ++SL
Sbjct: 255 EVALQYC-NSFSENILSFTNNINTTEGGTHEIGFKTALTRVINDYAKKYNLIKENNLSLQ 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT IISV+VP+P+FEGQTKT+L N EVR +VD V +YL+ YLE +P V +
Sbjct: 314 GEDIREGLTAIISVKVPDPQFEGQTKTKLVNTEVRSIVDSIVSDYLSTYLEENPAVGKKL 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ ++ A +A AA++AR+L R+K+ L S++LPGKLADCS P E+++VEGDSAGGS
Sbjct: 374 IENAIRAARAREAARKARELARRKTALESNTLPGKLADCSEKDPSLCELYLVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILNVE+ + NEEI+ +I ALG GV +DF E RYH
Sbjct: 434 AKQGRDRRFQAILPLRGKILNVEKSRLDKILANEEIRAMITALGTGVD-KDFDIEKARYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
++II+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLYKV++GK +Y Y D E
Sbjct: 493 RLIIMTDADVDGAHIRTLLLTFFYRYLRPLIENGYVYIAQPPLYKVKKGKLEKYLYSDDE 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ + + +IQR+KGLGEM P QLWETT+NPE R + ++ +EDAA+A+ +F+ L
Sbjct: 553 LERYLNEIGREGV-TIQRYKGLGEMDPEQLWETTMNPETRTILKVTLEDAAKADEIFTIL 611
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R+E I+ A LV NLD
Sbjct: 612 MGDKVEPRREFIEKNAKLVRNLD 634
>gi|333977511|ref|YP_004515456.1| DNA gyrase subunit B [Desulfotomaculum kuznetsovii DSM 6115]
gi|333820992|gb|AEG13655.1| DNA gyrase, B subunit [Desulfotomaculum kuznetsovii DSM 6115]
Length = 636
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 255/506 (50%), Positives = 355/506 (70%), Gaps = 20/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ+Y RGK VT L V + + GT++ F PD ++F + F+H T++ R+REL+F
Sbjct: 145 YHQRYERGKAVTPLKT----VGTANATGTKVSFKPDAEIFEELV-FNHETLSQRLRELSF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I R E + Q Y GG+ ++V++LN +K+ LH+ V G R D
Sbjct: 200 LNRGIKIIFRDERT----GQEIVYQHDGGIRDFVRYLNKNKEVLHNRPIYVFGER---DN 252
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ +++ALQ+ ++ Y +++ Y N+I T+DGGTH G K++LTR +N G+K +K+
Sbjct: 253 VQVEVALQY-TEGYVESLFSYVNNIHTVDGGTHEAGFKSALTRVINDYGRKYNLLKNGTP 311
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE +REGLT +ISV+VP P+FEGQTKT+LGN EVR +VD V + L +LE +P V
Sbjct: 312 ALAGEDIREGLTAVISVKVPEPQFEGQTKTKLGNSEVRGIVDTVVADGLATFLEENPGVA 371
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K+++A +A AA++AR+L R+KS L S+SLPGKLADCS P ++E+++VEGDSA
Sbjct: 372 RRIMDKAITAARAREAARKARELTRRKSALESASLPGKLADCSDRDPSKTELYLVEGDSA 431
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRRFQAILPLRGKILNVE+ + NEEI+ LI ALG G+ GEDF
Sbjct: 432 GGSAKQGRDRRFQAILPLRGKILNVEKARMDKILANEEIRALITALGTGI-GEDFDLSKA 490
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+I++++DADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLY++ +GK +Y Y
Sbjct: 491 RYHRILLMSDADVDGAHIRTLLLTFFYRYMRPLLEAGYVYIAQPPLYRIRKGKVDRYAYS 550
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
DAEL+++ + + SIQR+KGLGEM P QLWETT+NPE+R + ++ IEDA EA+ +F
Sbjct: 551 DAELEEILKEIGRDGV-SIQRYKGLGEMNPQQLWETTMNPEKRTILKVSIEDAIEADAIF 609
Query: 479 SSLMGARVDTRKELI-QNAANLVNLD 503
S LMG RV+ R+E I QNA + NLD
Sbjct: 610 SMLMGDRVEPRREFIQQNARAVRNLD 635
>gi|56418540|ref|YP_145858.1| DNA gyrase subunit B [Geobacillus kaustophilus HTA426]
gi|448236315|ref|YP_007400373.1| DNA gyrase subunit beta [Geobacillus sp. GHH01]
gi|56378382|dbj|BAD74290.1| DNA gyrase subunit B [Geobacillus kaustophilus HTA426]
gi|445205157|gb|AGE20622.1| DNA gyrase subunit beta [Geobacillus sp. GHH01]
Length = 638
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 255/506 (50%), Positives = 344/506 (67%), Gaps = 17/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG+P T L + DR GT RF PD ++FT +FD+ T+A R+RELAF
Sbjct: 144 HYQRYERGEPCTDLQV----IGETDRTGTTTRFKPDPEIFTETTEFDYETLATRLRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN L I L E D KN EY + GG+ YV+ LN ++ LH+ + G R DG
Sbjct: 200 LNRGLKITLTDERVDSRKN---EYVYEGGIRSYVRHLNRTREVLHEEPIYIAGER---DG 253
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++ALQ+ +D Y+ + + N+I T +GGTH G K +LTR +N +K + K+ D
Sbjct: 254 IAVEIALQY-NDGYTSNIYSFVNNIHTHEGGTHESGFKMALTRIINDYARKQQIFKENDT 312
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE VREGLT I+S++ P+P+FEGQTKT+LGN + R V D E +L +P +
Sbjct: 313 NLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLENPTIA 372
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K + A +A LAAK+AR+L R+KS L S+LPGKLADCSS P SE+++VEGDSA
Sbjct: 373 RKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCSSRDPSISELYVVEGDSA 432
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILPLRGKILNVE+ + N E++ +I ALG G+ GE+F
Sbjct: 433 GGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITALGTGI-GEEFDISKA 491
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHK+II+TDADVDGAHIRTLLLTFFYRY + L + G IY+ PPLYK+E+GKQV+Y Y+
Sbjct: 492 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYIYIAQPPLYKIEQGKQVRYAYN 551
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D +L+K+ + P +IQR+KGLGEM P QLWETT+NPE R L Q+ ++DA +A+ F
Sbjct: 552 DRQLEKILAELPDQPKPTIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDAIDADETF 611
Query: 479 SSLMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R++ I +NA + NLD
Sbjct: 612 EILMGDKVEPRRQFIEENARYVKNLD 637
>gi|312109156|ref|YP_003987472.1| DNA gyrase subunit beta [Geobacillus sp. Y4.1MC1]
gi|336233551|ref|YP_004586167.1| DNA gyrase subunit B [Geobacillus thermoglucosidasius C56-YS93]
gi|423718277|ref|ZP_17692459.1| DNA gyrase, B subunit [Geobacillus thermoglucosidans TNO-09.020]
gi|311214257|gb|ADP72861.1| DNA gyrase, B subunit [Geobacillus sp. Y4.1MC1]
gi|335360406|gb|AEH46086.1| DNA gyrase, B subunit [Geobacillus thermoglucosidasius C56-YS93]
gi|383367207|gb|EID44490.1| DNA gyrase, B subunit [Geobacillus thermoglucosidans TNO-09.020]
Length = 640
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 258/506 (50%), Positives = 345/506 (68%), Gaps = 17/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P T L V DR GT + F PD ++FT +FD+ T+A R+RELAF
Sbjct: 146 HYQKYQRGVPCTDLQV----VGETDRTGTTVHFKPDPEIFTETTEFDYETLATRLRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN L I L ED E N+ NEY + GG++ YV+ LN ++ LH+ ++G R DG
Sbjct: 202 LNRGLKITL--EDKRVE-NRKNEYCYEGGIQSYVKHLNRTREVLHEEPIYIIGER---DG 255
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++A Q+ +D+YS + + N+I T +GGTH G K +LTR +N +K + KD D
Sbjct: 256 IYVEIAFQY-NDSYSSNIYSFVNNIHTHEGGTHESGFKMALTRIINDYARKQQIFKDNDP 314
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE VREGLT I+S++ P P+FEGQTKT+LGN + R V D E +L +P +
Sbjct: 315 NLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLENPTIA 374
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K + A +A LAAK+AR+L R+KS L S+LPGKLADCSS P SE+++VEGDSA
Sbjct: 375 RKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYVVEGDSA 434
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILPLRGKI+NVE+ + N E++ +I ALG G+ GEDF
Sbjct: 435 GGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAIITALGTGI-GEDFDITKA 493
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHKIII+TDADVDGAHIRTLLLTFFYRY + + G +Y+ PPLYK+E+ KQV+Y Y+
Sbjct: 494 RYHKIIIMTDADVDGAHIRTLLLTFFYRYMREFIERGYVYIAQPPLYKIEQDKQVRYAYN 553
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D +L+K+ + P N +IQR+KGLGEM P QLWETT+NPE R L Q+ ++DA EA+ F
Sbjct: 554 DRQLEKILAELPENPKPTIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDAIEADETF 613
Query: 479 SSLMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R++ I +NA + NLD
Sbjct: 614 EILMGDKVEPRRQFIEENARYVKNLD 639
>gi|403252574|ref|ZP_10918883.1| DNA gyrase subunit B [Thermotoga sp. EMP]
gi|402812064|gb|EJX26544.1| DNA gyrase subunit B [Thermotoga sp. EMP]
Length = 636
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 250/513 (48%), Positives = 355/513 (69%), Gaps = 23/513 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGKPVT + + D+ GT +RF PD +F+ +FD + + R+RE+AF
Sbjct: 139 YRQRYERGKPVTPVEV----IGETDKHGTIVRFKPDPLIFSET-EFDPDILEHRLREIAF 193
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-------- 114
L P L I E D + + F GG+ EYV++LN KK LHDV+ ++
Sbjct: 194 LVPGLKI----EFEDRINGEKKTFKFDGGIVEYVKYLNRGKKALHDVIHIKRTEKVKTKN 249
Query: 115 DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK 174
D + +++A Q+ +D+YS+ ++ +AN+I+T+DGGTH+ K++LTR +N GKK +K
Sbjct: 250 GEDEVIVEIAFQY-TDSYSEDIVSFANTIKTVDGGTHVTAFKSTLTRLMNEYGKKHNFLK 308
Query: 175 DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELH 234
KD S GE VREGLT +ISV V NPEFEGQTK++LGN EV++ V ++++E L + + +
Sbjct: 309 -KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAMREELKKIFDAN 367
Query: 235 PDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVE 294
P+++ +ILSK +S +A AAKRAR++VR+K+VL++++LPGKLADCSST E++E+FIVE
Sbjct: 368 PELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLADCSSTNREKTELFIVE 427
Query: 295 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 354
GDSAGGSAKQ RDR FQA+LP+RGKILNVE+ + KNE+I ++I A+G G+ G+DF
Sbjct: 428 GDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVAVGTGI-GDDFD 486
Query: 355 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY +III+TDAD+DGAHIRTLLLT FYRY + L ++G IY+ +PPLY+++ GK+
Sbjct: 487 ESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRIYIALPPLYRIKAGKEEF 546
Query: 415 YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
Y Y D EL + K + IQR+KGLGEM P QLWETT+NPE R + ++ IEDA EA
Sbjct: 547 YVYSDQELAEYKEKLQGKRI-EIQRYKGLGEMNPEQLWETTMNPETRKIIRVTIEDAEEA 605
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ +F LMG +R+E I+ A + + LDI
Sbjct: 606 DRLFEILMGNDPSSRREFIERHA--LKVKELDI 636
>gi|297528381|ref|YP_003669656.1| DNA gyrase subunit beta [Geobacillus sp. C56-T3]
gi|319765163|ref|YP_004130664.1| DNA gyrase B subunit [Geobacillus sp. Y412MC52]
gi|297251633|gb|ADI25079.1| DNA gyrase, B subunit [Geobacillus sp. C56-T3]
gi|317110029|gb|ADU92521.1| DNA gyrase, B subunit [Geobacillus sp. Y412MC52]
Length = 638
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 255/506 (50%), Positives = 344/506 (67%), Gaps = 17/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG+P T L + DR GT RF PD ++FT +FD+ T+A R+RELAF
Sbjct: 144 HYQRYERGEPCTDLQV----IGETDRTGTTTRFKPDPEIFTETTEFDYETLATRLRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN L I L E D KN EY + GG+ YV+ LN ++ LH+ + G R DG
Sbjct: 200 LNRGLKITLTDERVDSRKN---EYVYEGGIRSYVRHLNRTREVLHEEPIYIAGER---DG 253
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++ALQ+ +D Y+ + + N+I T +GGTH G K +LTR +N +K + K+ D
Sbjct: 254 IAVEIALQY-NDGYTSNIYSFVNNIHTHEGGTHESGFKMALTRIINDYARKQQIFKENDA 312
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE VREGLT I+S++ P+P+FEGQTKT+LGN + R V D E +L +P +
Sbjct: 313 NLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLENPTIA 372
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K + A +A LAAK+AR+L R+KS L S+LPGKLADCSS P SE+++VEGDSA
Sbjct: 373 RKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCSSRDPSISELYVVEGDSA 432
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILPLRGKILNVE+ + N E++ +I ALG G+ GE+F
Sbjct: 433 GGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITALGTGI-GEEFDISKA 491
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHK+II+TDADVDGAHIRTLLLTFFYRY + L + G IY+ PPLYK+E+GKQV+Y Y+
Sbjct: 492 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYIYIAQPPLYKIEQGKQVRYAYN 551
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D +L+K+ + P +IQR+KGLGEM P QLWETT+NPE R L Q+ ++DA +A+ F
Sbjct: 552 DRQLEKILAELPDQPKPTIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDAIDADETF 611
Query: 479 SSLMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R++ I +NA + NLD
Sbjct: 612 EILMGDKVEPRRQFIEENARYVKNLD 637
>gi|449016431|dbj|BAM79833.1| DNA gyrase subunit B [Cyanidioschyzon merolae strain 10D]
Length = 812
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 244/447 (54%), Positives = 330/447 (73%), Gaps = 8/447 (1%)
Query: 69 IALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLALQW 127
++L E P ++ +GG+ EYV+ L K+ +H + + R+++ + + +ALQW
Sbjct: 366 VSLITETDIPSVYGGARFYHSGGIAEYVRDLTEGKERIHPEAIYLRRELQNVEVQIALQW 425
Query: 128 CSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVRE 187
C D Y+D +L +AN+IRTIDGGTH++G K +LTR LN+L ++ +++ + +LSG++ RE
Sbjct: 426 CRDQYNDILLSFANNIRTIDGGTHVDGFKFTLTRVLNALARQRGMLRENNSNLSGDYFRE 485
Query: 188 GLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLS 247
GLT IISV+VP+PEFEGQTK+RLGNPEVR +VD V E L+ Y + P V I K+
Sbjct: 486 GLTAIISVKVPDPEFEGQTKSRLGNPEVRSIVDAVVAEELSLYFDQRPRVFADIFEKAWQ 545
Query: 248 ALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD 307
A +AA AA+RARDLVR+KSVL SS+LPGKLADC+S P ESEIFIVEGDSAGGSAKQGRD
Sbjct: 546 AYQAAEAARRARDLVRRKSVLESSTLPGKLADCASRDPRESEIFIVEGDSAGGSAKQGRD 605
Query: 308 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 367
RRFQAILPLRGKILN+E+ D++ +YKN EIQ LI A+GLGVKGE+F LRYH+III+T
Sbjct: 606 RRFQAILPLRGKILNIEKCDDSKVYKNTEIQALITAIGLGVKGEEFDANQLRYHRIIIMT 665
Query: 368 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG----KQVQYCYDDAELK 423
DADVDGAHIRTLLLTFF+RYQ+++ + G +Y+ PPL+K+E G +Q +Y Y DA +
Sbjct: 666 DADVDGAHIRTLLLTFFFRYQRSVIENGYLYIARPPLFKLEIGGGKQRQTRYLYSDAACE 725
Query: 424 KVKSSFPSN---ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+ + N A Y++QRFKGLGEMMP QLWETT++P +R L ++ ++DA A+ +F++
Sbjct: 726 QALARLLRNKPDARYTLQRFKGLGEMMPQQLWETTMDPARRTLDRVSVQDAGAADRIFNT 785
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMG RV R++ I+ A + LD LDI
Sbjct: 786 LMGDRVFPRRQFIEQHAESLKLDDLDI 812
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDS----KDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIR 58
Y +++RG+ V L + +R GT IRF PD +FTT +F ++ +A R+
Sbjct: 215 YTMRFARGEVVEALRVVAAAPNPYPGFMERSGTYIRFAPDPSIFTTTTEFSYDVLATRLN 274
Query: 59 ELAFLNPKLTIAL--RKEDSDPEKN 81
ELA+LN L+I R+ + P +N
Sbjct: 275 ELAYLNAGLSIWFVDRRVGAVPSQN 299
>gi|336112685|ref|YP_004567452.1| DNA gyrase subunit B [Bacillus coagulans 2-6]
gi|335366115|gb|AEH52066.1| DNA gyrase, B subunit [Bacillus coagulans 2-6]
Length = 641
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/504 (49%), Positives = 346/504 (68%), Gaps = 12/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQKY RGKP L + DR GT F PD ++FT I+FD++ + R+RELAF
Sbjct: 146 YHQKYRRGKPAFDLKI----IGETDRTGTTTHFKPDPEIFTETIEFDYDILTTRLRELAF 201
Query: 63 LNPKLTIALR-KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
LN + I + K + +P K Y+ + GG++ YV+ LN K+ LH + + + DGIT
Sbjct: 202 LNKGIKITIEDKREKNPRKQVYH---YEGGIKSYVEHLNRSKEVLHKEPIYVEGEKDGIT 258
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
++++LQ+ +D ++ + +AN+I T +GGTH G K +LTR +N +K+ +K+ + +L
Sbjct: 259 VEVSLQY-NDGFTSNIYSFANNIHTYEGGTHESGFKTALTRVINDYARKNNLIKENEANL 317
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
+GE VREGLT I+S++ P+P+FEGQTKT+LGN E R + D E +++ +P V
Sbjct: 318 TGEDVREGLTAIVSIKHPDPQFEGQTKTKLGNTEARTITDAVFSETFEKFMMENPQVARK 377
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K L A +A +AAK+AR+L R+KS L S+SLPGKLADC+S P ESE++IVEGDSAGG
Sbjct: 378 IVEKGLMAARARMAAKKARELTRRKSALESTSLPGKLADCTSRDPSESELYIVEGDSAGG 437
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILPLRGKILNVE+ + N EI+ +I ALG GV GEDF RY
Sbjct: 438 SAKQGRDRMFQAILPLRGKILNVEKARLDKILSNAEIRTIITALGTGV-GEDFDISKARY 496
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK++I+TDADVDGAHIRTLLLTFFYRY + L D G IY+ PPLYKV++GK+V+Y Y D
Sbjct: 497 HKVVIMTDADVDGAHIRTLLLTFFYRYMRPLIDAGYIYIAQPPLYKVQQGKKVEYVYSDR 556
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L+++ ++ P+ +IQR+KGLGEM P QLWETT+ P R + Q+ ++DA EA+ F
Sbjct: 557 GLEELLNTLPAQPKPAIQRYKGLGEMNPEQLWETTMEPANRTMLQVSLDDAIEADGTFEM 616
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R+ I +NA + NLD
Sbjct: 617 LMGDKVEPRRNFIEENAIYVKNLD 640
>gi|294102629|ref|YP_003554487.1| DNA gyrase subunit B [Aminobacterium colombiense DSM 12261]
gi|293617609|gb|ADE57763.1| DNA gyrase, B subunit [Aminobacterium colombiense DSM 12261]
Length = 634
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/501 (48%), Positives = 350/501 (69%), Gaps = 14/501 (2%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
Q++ RG PVT L+ + + GT +RF PD +F ++F + ++GR+RE+AFLN
Sbjct: 145 QRFERGVPVTDLS----EGEPSTKTGTYVRFHPDTTIFEE-VRFSADILSGRLREMAFLN 199
Query: 65 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDL 123
P L I L D + E+ + GG++ ++++LN K PL + + + DG ++++
Sbjct: 200 PGLAITL----EDHRSGKCVEFHYEGGIKTFIEYLNKGKTPLFPEPIVIAGEKDGASVEI 255
Query: 124 ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGE 183
+Q+ +D Y + + +AN I TI+GGTH+ G + +LTR +N + +++K +++KD +LSGE
Sbjct: 256 GIQY-NDGYLERIFAFANMIHTIEGGTHVAGFRTALTRAVNEVARRAKILREKDENLSGE 314
Query: 184 HVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILS 243
++EGLTC++S+++ NP+FEGQTKT+LGN E++ + D V E L YL+ H +VL ++
Sbjct: 315 DLKEGLTCVLSIKLSNPQFEGQTKTKLGNSEIKGITDSVVYEGLLAYLDEHQEVLKPVVE 374
Query: 244 KSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAK 303
K++ A +A AAK+AR+LVR K+ + +LPGKLADCSS P E++IVEGDSAGGSAK
Sbjct: 375 KAIRARQARDAAKKARELVR-KTAMTGMNLPGKLADCSSRDPHVCEVYIVEGDSAGGSAK 433
Query: 304 QGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKI 363
QGRDR FQAILPLRGKILNVE+ + N EI+ +I+ALG G+ GEDF LRY+KI
Sbjct: 434 QGRDRGFQAILPLRGKILNVEKARFDKVLSNNEIRTIIQALGCGI-GEDFDHSKLRYNKI 492
Query: 364 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELK 423
II+TDADVDGAHI TLLLTFFYRY + L D+G +Y+ PPLY+V+RGK V YCY + EL+
Sbjct: 493 IIMTDADVDGAHISTLLLTFFYRYMQDLIDKGHLYLAQPPLYRVQRGKNVTYCYSEKELR 552
Query: 424 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 483
+ S P + S+QR+KGLGEM P QLWETT++P+ R+LK++ +EDA A+ FS LMG
Sbjct: 553 DIVDSTPDSRRASVQRYKGLGEMNPDQLWETTMDPQNRVLKRIEVEDAMLADEYFSILMG 612
Query: 484 ARVDTRKELIQNAANLV-NLD 503
+V+ R++ I A+ V NLD
Sbjct: 613 DKVEPRRDFIAAHAHEVRNLD 633
>gi|417643976|ref|ZP_12293998.1| DNA gyrase, B subunit [Staphylococcus warneri VCU121]
gi|445058376|ref|YP_007383780.1| DNA gyrase subunit B [Staphylococcus warneri SG1]
gi|330685298|gb|EGG96959.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU121]
gi|443424433|gb|AGC89336.1| DNA gyrase subunit B [Staphylococcus warneri SG1]
Length = 644
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 249/502 (49%), Positives = 336/502 (66%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + S D+ GT IRF D +FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EIGSTDKTGTAIRFKADSSIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I L E + + Q + Y++ GG++ YV+ LN +K+P+H + + + D I +
Sbjct: 205 LNKGIQITLTDERDEDDIRQ-DSYYYEGGIKSYVEMLNENKEPIHGEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + YS +L YAN+I T +GGTH +G K +LTR LNS G SK +K+ LS
Sbjct: 264 EIAIQY-NKGYSTNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGMNSKIIKEDKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I
Sbjct: 323 GEDTREGLTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPSVGRII 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 383 VEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSKNPEESEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD QAILPLRGKILNVE+ + N EI+++I A G G+ GE F RYH
Sbjct: 443 TKSGRDSSTQAILPLRGKILNVEKARLDRILNNNEIRSMITAFGTGIGGE-FDISKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K+ +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F L
Sbjct: 562 LDKLKAELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVTLEDAIDADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDIVENRRQFIEDNAVYANLD 643
>gi|403385778|ref|ZP_10927835.1| DNA gyrase subunit B [Kurthia sp. JC30]
Length = 639
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 239/499 (47%), Positives = 338/499 (67%), Gaps = 9/499 (1%)
Query: 6 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 65
K+ RGK V L + D GT RF D ++F ++ + +A R+RELA+LN
Sbjct: 148 KFERGKTVQPLKV----IGDTDHNGTTTRFKADPEIFKETTVYEFDILAHRVRELAYLNR 203
Query: 66 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLAL 125
+ I++ E E+ N+Y + GG++ YV+ +N K+P+H+ + + + DGI+I++A+
Sbjct: 204 GIRISIIDEREGQERR--NDYHYEGGIKSYVEHMNEKKEPIHEAIDLKGEKDGISIEIAM 261
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
Q+ + ++ + +AN+I T +GGTH G K +LTR +N +KS +K D +LSGE V
Sbjct: 262 QYNA-GFASNIFSFANNINTYEGGTHESGFKTALTRVINDYARKSNLLKAADANLSGEDV 320
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 245
REGL I+S++ P+P+FEGQTKT+LGN EV + + E+ +L +P V +I+ K
Sbjct: 321 REGLIAIVSIKHPDPQFEGQTKTKLGNSEVSAITNSLFSEHFERFLLENPSVARTIVDKG 380
Query: 246 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 305
L A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEE E++IVEGDSAGGSAK G
Sbjct: 381 LIASRARVAAKKAREMTRRKSALEVSSLPGKLADCSSRHPEECEMYIVEGDSAGGSAKSG 440
Query: 306 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 365
RDR FQAILPLRGKILNVE+ + N EI+ +I A+G G+ GEDF E RYHK++I
Sbjct: 441 RDRHFQAILPLRGKILNVEKARLDRILSNAEIRAMITAIGTGI-GEDFNLEKARYHKVVI 499
Query: 366 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 425
+TDADVDGAHIRTLLLTFF+R+ + L + G IYV PPLY+V++GK V+YCY DAEL+++
Sbjct: 500 MTDADVDGAHIRTLLLTFFFRFMRPLIEAGYIYVAQPPLYQVKQGKHVEYCYSDAELQEI 559
Query: 426 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 485
P +QR+KGLGEM QLW+TT++PE R+L Q+ ++DA EA+ F LMG
Sbjct: 560 VGRLPQQPKPMVQRYKGLGEMNADQLWDTTMDPEHRVLLQVELDDALEADRAFEDLMGDD 619
Query: 486 VDTRKELI-QNAANLVNLD 503
V+ R++ I +NA + NLD
Sbjct: 620 VEPRRQFIHENAVYVENLD 638
>gi|393809331|gb|AFN25839.1| DNA gyrase subunit B [Staphylococcus hominis]
Length = 644
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 250/502 (49%), Positives = 339/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + S D+ GT IRF D ++F+ +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EIGSTDKTGTVIRFKADSEIFSETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN ++I LR E D E+ + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGISITLRDEREDEEQREDT-YHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K LTR LNS G +SK +KD LS
Sbjct: 264 EIAIQYNS-GYATNLLSYANNIHTYEGGTHEDGFKRVLTRVLNSYGTQSKIIKDDKERLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ NP+FEGQTKT+LGN EVR++VD+ E+ +L +P+V I
Sbjct: 323 GEDTREGLTAVVSIKHGNPQFEGQTKTKLGNSEVRQIVDRLFSEHFERFLYENPNVARII 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS P+ESEIF+VEGDSAGGS
Sbjct: 383 VEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSKNPDESEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K+GRD + QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 443 TKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K + I R+KGLGEM QLWETT+NPE RM+ Q+ +EDA EA+ F L
Sbjct: 562 LDKLKVELNPTPKWQISRYKGLGEMNADQLWETTMNPENRMMLQVKLEDAVEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|357014909|ref|ZP_09079908.1| DNA gyrase subunit B [Paenibacillus elgii B69]
Length = 636
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 246/502 (49%), Positives = 343/502 (68%), Gaps = 11/502 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y G P L + D GT++ FWPD+Q+FT ++ + T+ RIRELAF
Sbjct: 144 HQQEYRCGVPQQELQV----IGESDETGTKVTFWPDEQIFTETTEYSYETLQSRIRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN + I L E +D ++ +F+ GG+ +V++LN +++ LH + D I ++
Sbjct: 200 LNKGIEITLTDERTDVSQS----FFYEGGIISFVEFLNQNREALHQAIYVEGQKDNIQVE 255
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+ALQ+ +D+Y++ + +AN+I T +GGTH G K++LTR LN +K +KD D +L+G
Sbjct: 256 IALQY-NDSYTENIYSFANNINTHEGGTHESGFKSALTRILNDFARKFNAIKDSDANLTG 314
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+ VREG+T IISV++P P+FEGQTKT+LGN EVR +V+ E L E+++ +P + I+
Sbjct: 315 DDVREGITAIISVKIPEPQFEGQTKTKLGNSEVRGIVESLFAEKLQEFMDENPTIARKII 374
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K + A +A AA++AR+L R+KS L SSLPGKLADCSS SE++IVEGDSAGGSA
Sbjct: 375 EKGVQAQRAREAARKARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSA 434
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQGRDR FQAILPLRGKILNVE+ + + EI+ +I ALG G+ GEDF RYHK
Sbjct: 435 KQGRDRHFQAILPLRGKILNVEKARMDKILSDNEIRAIITALGTGI-GEDFDIAKARYHK 493
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
III+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLYK+ER K V+Y Y+D +
Sbjct: 494 IIIMTDADVDGAHIRTLLLTFFYRYMRKLIEVGYVYIAQPPLYKLERNKTVRYAYNDKQR 553
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
+ + + F +IQR+KGLGEM P QLWETT++PE R + Q+ I+DA EA+ +F +LM
Sbjct: 554 EAILAEFGDGVKVNIQRYKGLGEMNPEQLWETTMDPESRTMLQVSIQDAIEADTMFDTLM 613
Query: 483 GARVDTRKELIQNAANLV-NLD 503
G+ V+ R++ IQ A V NLD
Sbjct: 614 GSNVEPRRDFIQLHAKYVQNLD 635
>gi|147676340|ref|YP_001210555.1| type IIA topoisomerase, B subunit [Pelotomaculum thermopropionicum
SI]
gi|146272437|dbj|BAF58186.1| type IIA topoisomerase, B subunit [Pelotomaculum thermopropionicum
SI]
Length = 643
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 260/503 (51%), Positives = 351/503 (69%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+YSRG PVT L L GT++ F PD ++F I F+ + +A R+REL+F
Sbjct: 152 YYQRYSRGIPVTGL----LVKGKSSATGTKVTFMPDPEIFEDLI-FNQDILAQRLRELSF 206
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L+ D Q + GG+ ++V++LN K PLH + +K D + +
Sbjct: 207 LNMGVKIILK----DRRSGQETVFQHDGGIMDFVRYLNKSKTPLHGKPIYIQKQKDDVLV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D Y +++L YAN+I TIDGGTH G KA+LTR +N G+K +K+ +LS
Sbjct: 263 EVALQY-TDTYVESILSYANNINTIDGGTHEAGFKAALTRVINDYGRKYNLLKNGAGNLS 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT +ISV+VP P+FEGQTKT+LGN EVR +VD V E L +LE +P + I
Sbjct: 322 GEDIREGLTAVISVKVPEPQFEGQTKTKLGNSEVRSIVDSVVGEGLGIFLEENPSIARRI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K+++A +A AA++AR+L R+KS L S+LPGKLADCS P SE+++VEGDSAGGS
Sbjct: 382 LEKAVTASRAREAARKARELTRRKSALEGSTLPGKLADCSERDPSVSELYLVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILNVE+ + NEEI+ +I ALG G+ GE+F RYH
Sbjct: 442 AKQGRDRRFQAILPLRGKILNVEKARLDKILANEEIRAMITALGTGI-GEEFDVSKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KII+++DADVDGAHIRTLLLTFFYRY + L ++G +++ PPLY+V++GK +Y Y DAE
Sbjct: 501 KIILMSDADVDGAHIRTLLLTFFYRYMRPLIEKGYVFIAQPPLYRVKKGKLEKYAYSDAE 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+K+ + + SIQR+KGLGEM QLWETT++PE R + Q+ +EDA EA+ VFS L
Sbjct: 561 LEKLLDQIGRDGV-SIQRYKGLGEMNAEQLWETTMDPETRTVMQVNLEDAIEADAVFSML 619
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG RV+ R++ IQ A LV NLD
Sbjct: 620 MGDRVEPRRDFIQENARLVRNLD 642
>gi|219121994|ref|XP_002181340.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407326|gb|EEC47263.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 727
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 259/523 (49%), Positives = 340/523 (65%), Gaps = 18/523 (3%)
Query: 3 YHQKYSRGKPVTTLTC--HVLPVDSKDRQGTRIRFWPDKQVFT-----TAIQFDHNTIAG 55
Y ++ RG P L + + SK + GT + F PD +VF I FD + + G
Sbjct: 205 YQMRFERGVPTGPLQNLDKLKTLLSKRKSGTSVTFLPDLKVFKGDNGKPDITFDSSRLKG 264
Query: 56 RIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVG---- 111
R+ E+A+LN L + L+ E P + + ++ AGGL EY + L K PL
Sbjct: 265 RMDEIAYLNAGLVLTLKDERKSPGRGRLQVFYHAGGLAEYAELLCRTKTPLFQGTTSSRK 324
Query: 112 ---FRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGK 168
RK D + D AL+W SD Y++++L + N+IRT DGG+H+EG+KA LTRT+N K
Sbjct: 325 KKPARKQKDSASDDDALRWSSDMYAESILSFCNNIRTRDGGSHVEGLKACLTRTVNQAAK 384
Query: 169 KSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLT 228
+S K+ +L GE +REGLT I+SV V PEFEGQTK RLGNPEVR VD + LT
Sbjct: 385 RSNKAKEGAANLPGEFIREGLTAIVSVSVSEPEFEGQTKGRLGNPEVRPAVDSLLSAELT 444
Query: 229 EYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEES 288
+ + P++LD+I +K+ SA AA AAK ARD+VR+K++L S+ LPGKLADC+S PEES
Sbjct: 445 KLFDFRPEILDAIYNKASSAQAAAAAAKAARDMVRRKTLLTSTILPGKLADCASRDPEES 504
Query: 289 EIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGV 348
EIFIVEGDSA GSAKQGRDRR QAILPLRGKILN+ER +Y+N E+Q LI ALGLGV
Sbjct: 505 EIFIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIERAATERIYQNTELQGLISALGLGV 564
Query: 349 KGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE 408
KG +F ++LRY +I+I+TDADVDGAHIR LLLTFFYRYQ+ L + G +Y+ PPLYKV
Sbjct: 565 KGSEFDPKSLRYGRIVIMTDADVDGAHIRVLLLTFFYRYQRELVENGHVYIAQPPLYKVS 624
Query: 409 ----RGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLK 464
R ++ Y ++D E V + S+QRFKGLGEMMP QLW TT++PE+R +
Sbjct: 625 VGSGRSRKEGYAFNDTERNTVMMQALAAGKVSLQRFKGLGEMMPEQLWSTTMDPERRTML 684
Query: 465 QLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
Q+ + DA+ A+ S LMG V RKE I A + +D LD+
Sbjct: 685 QVTVNDASMADQTLSILMGDTVAPRKEFISTQAETLRVDDLDL 727
>gi|373457143|ref|ZP_09548910.1| DNA gyrase, B subunit [Caldithrix abyssi DSM 13497]
gi|371718807|gb|EHO40578.1| DNA gyrase, B subunit [Caldithrix abyssi DSM 13497]
Length = 636
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 259/505 (51%), Positives = 350/505 (69%), Gaps = 14/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y RG PVT L + D++GT+I F D ++F I + +A R+RELAF
Sbjct: 141 YQQVYERGAPVTELKI----IGETDKRGTKITFLADSEIFK-KISYKFEVLANRLRELAF 195
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN L I + E +D ++ Y + GGL+E+V +L+ + PLH+ + F + DGI +
Sbjct: 196 LNKNLKITIVDERNDIQET----YQYEGGLKEFVAYLDASRTPLHEEPIYFEGERDGIPV 251
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISL 180
++ALQ+ + AY++ +L Y N++ T++GGTH+ G K++LTRT+NS +K +K+ D I+L
Sbjct: 252 EIALQYNT-AYTENILTYCNNVNTMEGGTHLSGFKSALTRTINSYAQKYNFIKNNDKINL 310
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGE VREGLT +ISV+VP P+FEGQTKT+LGN EVR V+ V E L E+LE +P V
Sbjct: 311 SGEDVREGLTAVISVKVPEPQFEGQTKTKLGNSEVRGAVETLVNEKLFEFLEQNPAVARP 370
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K +SA +A AA++AR+L R+K+VL SSSLPGKLADCSS P+ESE+++VEGDSAGG
Sbjct: 371 IIEKCISAARAREAARQARELTRRKTVLDSSSLPGKLADCSSNDPKESELYLVEGDSAGG 430
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQ RDRRFQAILPL+GKILNVE+ + N+EI+ +I A+G G+ + F E RY
Sbjct: 431 SAKQARDRRFQAILPLKGKILNVEKARLDKILSNDEIKTIITAIGTGIGSDSFDIEKRRY 490
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
KIII+TDADVDGAHIRTLLLTFFYRY L +G IY+ PPLYK++ GKQ Y +DD
Sbjct: 491 DKIIIMTDADVDGAHIRTLLLTFFYRYMGELIQQGKIYIAQPPLYKIKNGKQEFYAFDDE 550
Query: 421 ELKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
E ++ +K + IQR+KGLGEM P QLWETT+NPE R + Q+ I++A EA+ +F+
Sbjct: 551 EKERIIKELGVDESKVVIQRYKGLGEMNPEQLWETTMNPETRTILQVSIDNAMEADQIFT 610
Query: 480 SLMGARVDTRKELIQNAANLV-NLD 503
LMG V RK+ I+ A V NLD
Sbjct: 611 ILMGEEVAPRKKFIEENAQFVRNLD 635
>gi|73670270|ref|YP_306285.1| DNA gyrase subunit B [Methanosarcina barkeri str. Fusaro]
gi|72397432|gb|AAZ71705.1| DNA gyrase subunit B [Methanosarcina barkeri str. Fusaro]
Length = 633
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 256/503 (50%), Positives = 345/503 (68%), Gaps = 12/503 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y Q+Y RGKP VL + + + GT+ F PD+++F T + FD+ ++ R+RELA
Sbjct: 141 KYFQRYDRGKP----KADVLEIGTSETTGTKTTFKPDEKIFET-LDFDYEILSNRLRELA 195
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLN LTI+L D Q + + GG+ E+V++LN K+PLH + F + D + +
Sbjct: 196 FLNRGLTISLM--DLRTPDGQAETFTYEGGIVEFVKYLNNKKQPLHAPIYFERQRDDMVV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S +Y++ + +AN+I T +GGTHI G K +LTR N K +K K+ DI L+
Sbjct: 254 EIAMQYTS-SYAENVYSFANNINTHEGGTHIIGFKTALTRVANDYIKANKLSKE-DIKLT 311
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IISV++ P+FEGQTKTRLGN +V+ +VD V + L EY E +P V + I
Sbjct: 312 GDDVREGLTAIISVKLMEPQFEGQTKTRLGNSDVKGIVDSLVTDGLAEYFEENPKVANVI 371
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K+L A KA AAK+AR+L R+K+ L S+LPGKLADCS P EI+IVEG+SAGGS
Sbjct: 372 LEKALLAQKAREAAKKARELTRRKNALEVSTLPGKLADCSEKNPAACEIYIVEGNSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ A + KNEEI +LI A+G G+ EDF E+ RYH
Sbjct: 432 AKQGRDRSFQAILPLRGKILNVEKSRLAKILKNEEIISLITAIGTGIS-EDFTLESARYH 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDG HIRTLLLT F+RY + L DEG +Y+ PPLY++++GK Y + D E
Sbjct: 491 KVIIMTDADVDGEHIRTLLLTLFFRYMRPLIDEGYVYIAQPPLYRIKKGKAEYYIHSDRE 550
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ K L IQR+KGLGEM P QLWETT+NPE R+L Q+ +EDA A+ +F L
Sbjct: 551 LEAKKKELGEKGL-GIQRYKGLGEMNPGQLWETTMNPESRILLQVTLEDAIRADEIFRVL 609
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG V+ R+ I+ +A +VNLD
Sbjct: 610 MGDEVEPRRNFIEAHAKEVVNLD 632
>gi|239637290|ref|ZP_04678277.1| DNA gyrase, B subunit [Staphylococcus warneri L37603]
gi|239597127|gb|EEQ79637.1| DNA gyrase, B subunit [Staphylococcus warneri L37603]
Length = 640
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/502 (49%), Positives = 335/502 (66%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + S D+ GT IRF D +FT +++ T+ RIRELAF
Sbjct: 145 YHQAYKKGVPQFDLK----EIGSTDKTGTAIRFKADSSIFTETTVYNYETLQQRIRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I L E + + Q + Y + GG++ YV+ LN +K+P+H + + + D I +
Sbjct: 201 LNKGIQITLTDERDEDDIRQ-DSYHYEGGIKSYVEMLNENKEPIHGEPIYIHQSKDDIEV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + YS +L YAN+I T +GGTH +G K +LTR LNS G SK +K+ LS
Sbjct: 260 EIAIQY-NKGYSTNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGMNSKIIKEDKDRLS 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I
Sbjct: 319 GEDTREGLTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPSVGRII 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 379 VEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSKNPEESEIFLVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD QAILPLRGKILNVE+ + N EI+++I A G G+ GE F RYH
Sbjct: 439 TKSGRDSSTQAILPLRGKILNVEKARLDRILNNNEIRSMITAFGTGIGGE-FDISKARYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 498 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K+ +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F L
Sbjct: 558 LDKLKAELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVTLEDAIDADQTFEML 617
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 618 MGDVVENRRQFIEDNAVYANLD 639
>gi|393809323|gb|AFN25835.1| DNA gyrase subunit B [Staphylococcus hominis]
gi|393809333|gb|AFN25840.1| DNA gyrase subunit B [Staphylococcus hominis]
gi|393809337|gb|AFN25842.1| DNA gyrase subunit B [Staphylococcus hominis]
gi|393809341|gb|AFN25844.1| DNA gyrase subunit B [Staphylococcus hominis]
Length = 644
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/502 (49%), Positives = 340/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + S D+ GT IRF D ++F+ +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EIGSTDKTGTVIRFKADSEIFSETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN ++I LR E D E+ + Y + GG++ YV+ LN +K+ +HD + + D I +
Sbjct: 205 LNKGISITLRDEREDEEQREDT-YHYEGGIKSYVELLNENKESIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +KD LS
Sbjct: 264 EIAIQYNS-GYATNLLSYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKDDKERLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ NP+FEGQTKT+LGN EVR++VD+ E+ +L +P+V I
Sbjct: 323 GEDTREGLTAVVSIKHGNPQFEGQTKTKLGNSEVRQIVDRLFSEHFERFLYENPNVARII 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS P+ESEIF+VEGDSAGGS
Sbjct: 383 VEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSKNPDESEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K+GRD + QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 443 TKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K+ + I R+KGLGEM QLWETT+NPE RM+ Q+ +EDA EA+ F L
Sbjct: 562 LDKLKAELNPTPKWQISRYKGLGEMNADQLWETTMNPENRMMLQVKLEDAVEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|393408286|emb|CCI10030.1| topoisomerase II subunit B [Staphylococcus hominis]
gi|393809319|gb|AFN25833.1| DNA gyrase subunit B [Staphylococcus hominis]
gi|393809321|gb|AFN25834.1| DNA gyrase subunit B [Staphylococcus hominis]
gi|393809329|gb|AFN25838.1| DNA gyrase subunit B [Staphylococcus hominis]
Length = 644
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/502 (49%), Positives = 340/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + S D+ GT IRF D ++F+ +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EIGSTDKTGTVIRFKADSEIFSETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN ++I LR E D E+ + Y + GG++ YV+ LN +K+ +HD + + D I +
Sbjct: 205 LNKGISITLRDEREDEEQREDT-YHYEGGIKSYVELLNENKESIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +KD LS
Sbjct: 264 EIAIQYNS-GYATNLLSYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKDDKERLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ NP+FEGQTKT+LGN EVR++VD+ E+ +L +P+V I
Sbjct: 323 GEDTREGLTAVVSIKHGNPQFEGQTKTKLGNSEVRQIVDRLFSEHFERFLYENPNVARII 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS P+ESEIF+VEGDSAGGS
Sbjct: 383 VEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSKNPDESEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K+GRD + QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 443 TKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K+ + I R+KGLGEM QLWETT+NPE RM+ Q+ +EDA EA+ F L
Sbjct: 562 LDKLKAELNPTPKWQISRYKGLGEMNADQLWETTMNPENRMMLQVKLEDAVEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|1622792|gb|AAC44498.1| DNA topoisomerase II subunit B [Thermotoga maritima MSB8]
Length = 636
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/513 (48%), Positives = 355/513 (69%), Gaps = 23/513 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGKPVT + + D+ GT +RF PD +F+ +FD + + R+RE+AF
Sbjct: 139 YRQRYERGKPVTPMEV----IGETDKHGTIVRFKPDPLIFSET-EFDPDILEHRLREIAF 193
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-------- 114
L P L I E D + + F GG+ EYV++LN KK LHDV+ ++
Sbjct: 194 LVPGLKI----EFEDRINGEKKTFKFDGGIVEYVKYLNRGKKALHDVIHIKRTEKVKTKN 249
Query: 115 DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK 174
D + +++A Q+ +D+YS+ ++ +AN+I+T+DGGTH+ K++LTR +N GKK +K
Sbjct: 250 GEDEVIVEIAFQY-TDSYSEDIVSFANTIKTVDGGTHVTAFKSTLTRLMNEYGKKHNFLK 308
Query: 175 DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELH 234
KD S GE VREGLT +ISV V NPEFEGQTK++LGN EV++ V ++++E L + + +
Sbjct: 309 -KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAMREELKKIFDAN 367
Query: 235 PDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVE 294
P+++ +ILSK +S +A AAKRAR++VR+K+VL++++LPGKLADCSST E++E+FIVE
Sbjct: 368 PELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLADCSSTHREKTELFIVE 427
Query: 295 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 354
GDSAGGSAKQ RDR FQA+LP+RGKILNVE+ + KNE+I ++I A+G G+ G+DF
Sbjct: 428 GDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVAVGTGI-GDDFD 486
Query: 355 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY +III+TDAD+DGAHIRTLLLT FYRY + L ++G +Y+ +PPLY+++ G++
Sbjct: 487 ESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPPLYRIKAGREEF 546
Query: 415 YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
Y Y D EL + K + IQR+KGLGEM P QLWETT+NPE R + ++ IEDA EA
Sbjct: 547 YVYSDQELAEYKEKLQGKRI-EIQRYKGLGEMNPEQLWETTMNPETRKIIRVTIEDAEEA 605
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ +F LMG +R+E I+ A + + LDI
Sbjct: 606 DRLFEILMGNDPSSRREFIERHA--LKVKELDI 636
>gi|170287901|ref|YP_001738139.1| DNA gyrase subunit B [Thermotoga sp. RQ2]
gi|170175404|gb|ACB08456.1| DNA gyrase, B subunit [Thermotoga sp. RQ2]
Length = 636
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/513 (48%), Positives = 355/513 (69%), Gaps = 23/513 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGKPVT + + D+ GT +RF PD +F+ +FD + + R+RE+AF
Sbjct: 139 YRQRYERGKPVTPVEV----IGETDKHGTIVRFKPDPLIFSET-EFDPDILEHRLREIAF 193
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-------- 114
L P L I E D + + F GG+ EYV++LN KK LHDV+ ++
Sbjct: 194 LVPGLKI----EFEDRINGEKKTFKFDGGIVEYVKYLNRGKKALHDVIHIKRTEKVKTKN 249
Query: 115 DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK 174
D + +++A Q+ +D+YS+ ++ +AN+I+T+DGGTH+ K++LTR +N GKK +K
Sbjct: 250 GEDEVIVEIAFQY-TDSYSEDIVSFANTIKTVDGGTHVTAFKSTLTRLMNEYGKKHNFLK 308
Query: 175 DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELH 234
KD S GE VREGLT +ISV V NPEFEGQTK++LGN EV++ V ++++E L + + +
Sbjct: 309 -KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAMREELKKIFDAN 367
Query: 235 PDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVE 294
P+++ +ILSK +S +A AAKRAR++VR+K+VL++++LPGKLADCSST E++E+FIVE
Sbjct: 368 PELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLADCSSTHREKTELFIVE 427
Query: 295 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 354
GDSAGGSAKQ RDR FQA+LP+RGKILNVE+ + KNE+I ++I A+G G+ G+DF
Sbjct: 428 GDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVAVGTGI-GDDFD 486
Query: 355 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY +III+TDAD+DGAHIRTLLLT FYRY + L ++G +Y+ +PPLY+++ G++
Sbjct: 487 ESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPPLYRIKAGREEF 546
Query: 415 YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
Y Y D EL + K + IQR+KGLGEM P QLWETT+NPE R + ++ IEDA EA
Sbjct: 547 YVYSDQELAEYKEKLQGKRI-EIQRYKGLGEMNPEQLWETTMNPETRKIIRVTIEDAEEA 605
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ +F LMG +R+E I+ A + + LDI
Sbjct: 606 DRLFEILMGNDPSSRREFIERHA--LKVKELDI 636
>gi|126697571|ref|YP_001086468.1| DNA gyrase subunit B [Clostridium difficile 630]
gi|254977347|ref|ZP_05273819.1| DNA gyrase subunit B [Clostridium difficile QCD-66c26]
gi|255094677|ref|ZP_05324155.1| DNA gyrase subunit B [Clostridium difficile CIP 107932]
gi|255102904|ref|ZP_05331881.1| DNA gyrase subunit B [Clostridium difficile QCD-63q42]
gi|255308724|ref|ZP_05352895.1| DNA gyrase subunit B [Clostridium difficile ATCC 43255]
gi|255316431|ref|ZP_05358014.1| DNA gyrase subunit B [Clostridium difficile QCD-76w55]
gi|255519091|ref|ZP_05386767.1| DNA gyrase subunit B [Clostridium difficile QCD-97b34]
gi|255652274|ref|ZP_05399176.1| DNA gyrase subunit B [Clostridium difficile QCD-37x79]
gi|260681774|ref|YP_003213059.1| DNA gyrase subunit B [Clostridium difficile CD196]
gi|306521988|ref|ZP_07408335.1| DNA gyrase, B subunit [Clostridium difficile QCD-32g58]
gi|384359324|ref|YP_006197176.1| DNA gyrase subunit B [Clostridium difficile BI1]
gi|423088743|ref|ZP_17077117.1| DNA gyrase, B subunit [Clostridium difficile 70-100-2010]
gi|115249008|emb|CAJ66819.1| DNA gyrase subunit B [Clostridium difficile 630]
gi|260207937|emb|CBA60049.1| DNA gyrase subunit B [Clostridium difficile CD196]
gi|357559149|gb|EHJ40609.1| DNA gyrase, B subunit [Clostridium difficile 70-100-2010]
Length = 633
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 251/503 (49%), Positives = 341/503 (67%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y +G P + L V +GT I+F PD+ +F I+F + T+ R+REL+F
Sbjct: 140 YKQTYEKGLPTSKLEV----VGESQDKGTMIQFMPDETIFD-EIEFKYETLEYRLRELSF 194
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I ED + + E+ + GGL EY+++LN + +HD +V K VD +
Sbjct: 195 LNKGIKIVF--EDKREGQEKRKEFHYTGGLVEYIKYLNKSRTGIHDDIVYIDKKVDDCFV 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+LA+Q+ +D Y++ + +AN+I T +GG+H+ G KA+LT+T+N K++K +K+ D++L
Sbjct: 253 ELAMQY-TDGYTENIYSFANNINTHEGGSHLSGFKAALTKTVNDYAKRNKFLKENDVNLL 311
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT ++SV++P P+FEGQTKT+LGN +R +VD + L +LE +P I
Sbjct: 312 GEDIREGLTAVVSVKLPEPQFEGQTKTKLGNSFMRGIVDSVTVDELGSFLEENPSTARII 371
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AAK+AR+L R+KSVL S+SLPGKLADC+ P +SEIF+VEGDSAGGS
Sbjct: 372 VDKALRAQRAREAAKKARELTRRKSVLESTSLPGKLADCAEKDPSKSEIFLVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR QAILPLRGKILNVE+ + ++EI+N+I A G G+ GEDF + RYH
Sbjct: 432 AKQGRDRNSQAILPLRGKILNVEKSRLDRILSSDEIKNMITAYGCGI-GEDFDIDKARYH 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFF+RY + L DEG +Y PPLYKV + K+ Y Y D E
Sbjct: 491 KIIIMTDADVDGAHIRTLLLTFFFRYMRPLIDEGYVYAAQPPLYKVTKQKKEHYVYSDKE 550
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + N + +QR+KGLGEM QLWETT+NPE R L Q+ +EDAA A+ VFS L
Sbjct: 551 LNILLDEIGRNGV-ELQRYKGLGEMNAEQLWETTMNPETRTLLQVTVEDAAIADEVFSML 609
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V RKE I+ A V NLD
Sbjct: 610 MGDKVAPRKEFIEENARFVRNLD 632
>gi|15643596|ref|NP_228642.1| DNA gyrase, subunit B [Thermotoga maritima MSB8]
gi|418044997|ref|ZP_12683093.1| DNA gyrase, B subunit [Thermotoga maritima MSB8]
gi|6831559|sp|P77993.2|GYRB_THEMA RecName: Full=DNA gyrase subunit B; AltName: Full=Topoisomerase II
subunit B
gi|4981365|gb|AAD35915.1|AE001750_9 DNA gyrase, subunit B [Thermotoga maritima MSB8]
gi|351678079|gb|EHA61226.1| DNA gyrase, B subunit [Thermotoga maritima MSB8]
Length = 636
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/513 (48%), Positives = 355/513 (69%), Gaps = 23/513 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGKPVT + + D+ GT +RF PD +F+ +FD + + R+RE+AF
Sbjct: 139 YRQRYERGKPVTPVEV----IGETDKHGTIVRFKPDPLIFSET-EFDPDILEHRLREIAF 193
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-------- 114
L P L I E D + + F GG+ EYV++LN KK LHDV+ ++
Sbjct: 194 LVPGLKI----EFEDRINGEKKTFKFDGGIVEYVKYLNRGKKALHDVIHIKRTEKVKTKN 249
Query: 115 DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK 174
D + +++A Q+ +D+YS+ ++ +AN+I+T+DGGTH+ K++LTR +N GKK +K
Sbjct: 250 GEDEVIVEIAFQY-TDSYSEDIVSFANTIKTVDGGTHVTAFKSTLTRLMNEYGKKHNFLK 308
Query: 175 DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELH 234
KD S GE VREGLT +ISV V NPEFEGQTK++LGN EV++ V ++++E L + + +
Sbjct: 309 -KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAMREELKKIFDAN 367
Query: 235 PDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVE 294
P+++ +ILSK +S +A AAKRAR++VR+K+VL++++LPGKLADCSST E++E+FIVE
Sbjct: 368 PELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLADCSSTHREKTELFIVE 427
Query: 295 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 354
GDSAGGSAKQ RDR FQA+LP+RGKILNVE+ + KNE+I ++I A+G G+ G+DF
Sbjct: 428 GDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVAVGTGI-GDDFD 486
Query: 355 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY +III+TDAD+DGAHIRTLLLT FYRY + L ++G +Y+ +PPLY+++ G++
Sbjct: 487 ESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPPLYRIKAGREEF 546
Query: 415 YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
Y Y D EL + K + IQR+KGLGEM P QLWETT+NPE R + ++ IEDA EA
Sbjct: 547 YVYSDQELAEYKEKLQGKRI-EIQRYKGLGEMNPEQLWETTMNPETRKIIRVTIEDAEEA 605
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ +F LMG +R+E I+ A + + LDI
Sbjct: 606 DRLFEILMGNDPSSRREFIERHA--LKVKELDI 636
>gi|389574651|ref|ZP_10164711.1| DNA gyrase, B subunit [Bacillus sp. M 2-6]
gi|388425773|gb|EIL83598.1| DNA gyrase, B subunit [Bacillus sp. M 2-6]
Length = 640
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 252/503 (50%), Positives = 345/503 (68%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q++ RG PV L + D GT F PD ++FT I+FD++T+A R+RELAF
Sbjct: 145 HYQQFKRGVPVGDLEV----IGETDVTGTTTHFVPDPEIFTETIEFDYDTLANRVRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED K + NEY + GG++ YV+ LN K+ +H+ V + DGIT+
Sbjct: 201 LTKGVNIII--EDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEEPVYIEGEKDGITV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + +AN+I T +GGTH G K LTR +N +K+ KD D +LS
Sbjct: 259 EVALQY-NDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKNGVFKDGDSNLS 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IIS++ P+P+FEGQTKT+LGN E R + D E L ++L +PD I
Sbjct: 318 GEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEKFLLENPDAAKKI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 378 VEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELYIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 438 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFTLEKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D +
Sbjct: 497 KIVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRVEYVYNDKQ 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ + P +QR+KGLGEM QLWETT++P+ R L Q+ +EDA +A+ F L
Sbjct: 557 LDELLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPDARTLLQVTLEDAIDADETFEML 616
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V+ R+ I +NA + NLD
Sbjct: 617 MGDKVEPRRNFIEENAQYVKNLD 639
>gi|220932011|ref|YP_002508919.1| DNA gyrase subunit B [Halothermothrix orenii H 168]
gi|219993321|gb|ACL69924.1| DNA gyrase, B subunit [Halothermothrix orenii H 168]
Length = 637
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 243/507 (47%), Positives = 354/507 (69%), Gaps = 13/507 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY+Q+Y RG P T + + +R GT I F PD ++F +F + T+A R++E A
Sbjct: 143 EYYQRYERGYPKTKFQ----KLGTSNRNGTIISFKPDPEIFDVT-EFKYETLAHRLQESA 197
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
FLN +L++ L + SD K + +Y GG++ +V++LN +++ ++ D++ K+
Sbjct: 198 FLNKELSLILIDKRSDKTKKEVFQY--DGGIKAFVEYLNKNRQVINEDIIYTEKENGDYY 255
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
I++ALQ+ ++ Y++ + YAN+I T+DGG H+ G K +LT+ +N+ K++ +K D +L
Sbjct: 256 IEVALQY-NEGYNERIFSYANNINTVDGGYHLTGFKTALTKAINNFAKQNNLLKQSDPTL 314
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
+G VREGLT +++V++PNP+FEGQTK++LGN E+R +V+ ++ +YL+ YL+ +P+V
Sbjct: 315 TGNDVREGLTAVVNVKLPNPQFEGQTKSKLGNSEIRSIVESNIYDYLSLYLDSNPEVGKK 374
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K++ A++A A+K+AR+L R+K+ L S SLPGKLADC+S PE+SE+F+VEGDSAGG
Sbjct: 375 IVDKAIQAIRARQASKKARELTRRKNALNSHSLPGKLADCASRKPEKSELFLVEGDSAGG 434
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGR+R FQAILPL+GKI+NVER + N EI +I ALG G+ G++F + LRY
Sbjct: 435 SAKQGRNRHFQAILPLKGKIMNVERARLDKILSNNEIATIISALGTGI-GQEFNIDKLRY 493
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIII+TDADVDGAHI TLLLT FYRY L EG IY+ PPLYKV K ++Y Y D
Sbjct: 494 HKIIIMTDADVDGAHIATLLLTLFYRYMPELIKEGYIYIAQPPLYKVSWKKNIRYLYTDK 553
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+ +K N YSIQR+KGLGEM P QLWETT+NPE R L ++ I+D EA+ +F+
Sbjct: 554 ELESLKREL-ENKSYSIQRYKGLGEMNPRQLWETTMNPETRKLLRIEIDDEIEADEIFTR 612
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMG+ R+E I + A++V D LDI
Sbjct: 613 LMGSNASLRREFIISNADMV--DELDI 637
>gi|158319065|ref|YP_001511572.1| DNA gyrase subunit B [Alkaliphilus oremlandii OhILAs]
gi|158139264|gb|ABW17576.1| DNA gyrase, B subunit [Alkaliphilus oremlandii OhILAs]
Length = 636
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/503 (49%), Positives = 341/503 (67%), Gaps = 13/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++ RG PV + + +GT I F PD ++F + F + T+ R+RELAF
Sbjct: 144 YWQRFERGNPVEDIKI----IGETKEKGTTILFKPDAEIFEETV-FQYETLEYRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L D K Q +++ GG+ EYV++LN +K LH+ ++ F K+ + +
Sbjct: 199 LNKGIKIVLI--DKREGKEQEKVFYYDGGIMEYVKYLNKNKSVLHEKIIHFEKEKETSVV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y++ + YAN+I T +GGTH+ G +ASLTR +N KK+ +K+KD +
Sbjct: 257 EVAMQY-TDTYTENIFSYANNINTHEGGTHLSGFRASLTRIVNDYAKKAGFLKEKDANFL 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT +ISV++ P+FEGQTKT+LGN E+R +V+ SV E L +LE +P I
Sbjct: 316 GEDIREGLTAVISVKLTEPQFEGQTKTKLGNSEMRGIVENSVSEALEAFLEENPSDAKII 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KSL A +A AAK+AR+L R+K L S +LPGKLADCS P SEI+IVEG+SAGGS
Sbjct: 376 VEKSLRAQRAREAAKKARELTRRKGALESMALPGKLADCSEKDPALSEIYIVEGNSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR QAILPLRGKILNVE+ M ++EI+N+I A G + GE+F E LRYH
Sbjct: 436 AKQGRDRSIQAILPLRGKILNVEKARLDKMLNSDEIRNMITAFGTSI-GEEFDIEKLRYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTF +R+ K L + G IY+ PPLYK+++GK +Y Y + E
Sbjct: 495 KIVIMTDADVDGAHIRTLLLTFLFRFMKPLIERGYIYIAQPPLYKLKKGKVEEYAYSEEE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
++ S N IQR+KGLGEM P QLWETT+NPE R Q+ IEDAA A+ +F++L
Sbjct: 555 MQVKLSEMGGNV--DIQRYKGLGEMNPEQLWETTMNPETRTFLQVTIEDAAAADNIFTTL 612
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V+ R+E I QN+ + NLD
Sbjct: 613 MGDKVEPRREFIEQNSKYVTNLD 635
>gi|423082996|ref|ZP_17071578.1| DNA gyrase, B subunit [Clostridium difficile 002-P50-2011]
gi|423086520|ref|ZP_17074925.1| DNA gyrase, B subunit [Clostridium difficile 050-P50-2011]
gi|357546724|gb|EHJ28633.1| DNA gyrase, B subunit [Clostridium difficile 050-P50-2011]
gi|357547075|gb|EHJ28974.1| DNA gyrase, B subunit [Clostridium difficile 002-P50-2011]
Length = 633
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 251/503 (49%), Positives = 341/503 (67%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y +G P + L V +GT I+F PD+ +F I+F + T+ R+REL+F
Sbjct: 140 YKQTYEKGLPTSKLEV----VGESQDKGTMIQFMPDETIFD-EIEFKYETLEYRLRELSF 194
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I ED + + E+ + GGL EY+++LN + +HD +V K VD +
Sbjct: 195 LNKGIKIVF--EDKREGQEKRKEFHYTGGLVEYIKYLNKSRTGIHDDIVYIDKKVDDCFV 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+LA+Q+ +D Y++ + +AN+I T +GG+H+ G KA+LT+T+N K++K +K+ D++L
Sbjct: 253 ELAMQY-TDGYTENIYSFANNINTHEGGSHLSGFKAALTKTVNDYAKRNKFLKENDVNLL 311
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT ++SV++P P+FEGQTKT+LGN +R +VD + L +LE +P I
Sbjct: 312 GEDIREGLTAVVSVKLPEPQFEGQTKTKLGNSFMRGIVDSVTVDELGSFLEENPATARII 371
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AAK+AR+L R+KSVL S+SLPGKLADC+ P +SEIF+VEGDSAGGS
Sbjct: 372 VDKALRAQRAREAAKKARELTRRKSVLESTSLPGKLADCAEKDPSKSEIFLVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR QAILPLRGKILNVE+ + ++EI+N+I A G G+ GEDF + RYH
Sbjct: 432 AKQGRDRNSQAILPLRGKILNVEKSRLDRILSSDEIKNMITAYGCGI-GEDFDIDKARYH 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFF+RY + L DEG +Y PPLYKV + K+ Y Y D E
Sbjct: 491 KIIIMTDADVDGAHIRTLLLTFFFRYMRPLIDEGYVYAAQPPLYKVTKQKKEHYVYSDKE 550
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + N + +QR+KGLGEM QLWETT+NPE R L Q+ +EDAA A+ VFS L
Sbjct: 551 LNILLDEIGRNGV-ELQRYKGLGEMNAEQLWETTMNPETRTLLQVTVEDAAIADEVFSML 609
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V RKE I+ A V NLD
Sbjct: 610 MGDKVAPRKEFIEENARFVRNLD 632
>gi|224477952|ref|YP_002635558.1| DNA gyrase subunit B [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222422559|emb|CAL29373.1| DNA gyrase subunit B [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 640
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 247/502 (49%), Positives = 335/502 (66%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q Y RG P L + + GT IRF D ++FT + + + RIRELAF
Sbjct: 145 YNQAYKRGIPQYDLKV----IGETEHNGTEIRFKADPEIFTETTTYQYEVLQKRIRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKD-VDGITI 121
LN + I+LR E D + + + Y + GG++ YV+ LN +K+PL D + D D + +
Sbjct: 201 LNKGIQISLRDE-RDEDNIREDSYHYEGGIKSYVELLNENKEPLFDEPVYVHDRKDDVEV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S ++ +L YAN+I T +GGTH +G K +LTR LNS G KS +K+ LS
Sbjct: 260 EIAIQYNS-GFTTNLLSYANNIHTYEGGTHEDGFKRALTRVLNSYGTKSGLIKEDKERLS 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T I+S++ +P+FEGQTKT+LGN EVR++VD+ E + +L HP V I
Sbjct: 319 GEDTREGMTAIVSIKHEDPQFEGQTKTKLGNSEVRQIVDRLSAEDMERFLYEHPQVARII 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 379 IEKGLMASRARIAAKKAREVTRRKSALEVSSLPGKLADCSSKNPEESEIFLVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+++I A G G+ GE F RYH
Sbjct: 439 TKLGRDSRTQAILPLRGKILNVEKSRLDRILNNNEIRSMITAFGTGIGGE-FDISKARYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPL+K+ +GKQ Y +++ E
Sbjct: 498 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLFKLTQGKQKYYVFNERE 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+K+KS +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA EA+ F L
Sbjct: 558 LEKLKSELKPTPKWSISRYKGLGEMDADQLWETTMNPEHRSMLQVTLEDAIEADTTFEML 617
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 618 MGDVVENRRQFIEDNAVYANLD 639
>gi|257875897|ref|ZP_05655550.1| DNA gyrase B subunit [Enterococcus casseliflavus EC20]
gi|257810063|gb|EEV38883.1| DNA gyrase B subunit [Enterococcus casseliflavus EC20]
Length = 649
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 247/507 (48%), Positives = 340/507 (67%), Gaps = 14/507 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L +D DR GT + F PD ++FT F+ + +A R+RELAF
Sbjct: 150 YYQEYHRGAVVDDLKV----IDETDRHGTTVHFVPDPEIFTETTVFNFDKLATRVRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I++ ED EK EY + GG++ YV+ LN K + D + + GIT+
Sbjct: 206 LNRGLKISI--EDKREEKPVLKEYHYDGGIKSYVEHLNASKTVIFPDPIYLEGEQQGITV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ +D+Y +L +AN+I T +GGTH G K +LTR +N +KSK +K+ D +L+
Sbjct: 264 EVSMQY-TDSYHSNLLSFANNIHTYEGGTHEFGFKTALTRVINDYARKSKLMKENDENLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +IS++ P+P+FEGQTKT+LGN EVR V D+ E+ T++L +P+V +
Sbjct: 323 GEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEHFTKFLMENPNVGRQV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A KA AAKRAR++ R+K L S+LPGKLADCSS PE+ E+FIVEGDSAGGS
Sbjct: 383 VEKGLLASKARQAAKRAREMTRRKGALEISNLPGKLADCSSNDPEKCELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RYH
Sbjct: 443 AKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD--- 418
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PPLY V++GK + Y
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQPPLYGVKQGKNIHYIQPGKN 561
Query: 419 -DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ +LK S P+ S+QR+KGLGEM QLWETT++PE RM+ ++ ++DA EA+ +
Sbjct: 562 AEQDLKNTIESLPATPKPSVQRYKGLGEMDDHQLWETTMDPENRMMLRVSVDDAIEADQI 621
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
F LMG RV+ R+ I+ A+ V NLD
Sbjct: 622 FEMLMGDRVEPRRAFIEENAHYVKNLD 648
>gi|420169307|ref|ZP_14675909.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM087]
gi|394231515|gb|EJD77142.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM087]
Length = 643
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 250/502 (49%), Positives = 335/502 (66%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + D+ GT IRF DK++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L+ E + + Y + GG++ YV LN +K+PLHD + + D I +
Sbjct: 205 LNKGIQITLKDEREEEVRED--SYHYEGGIKSYVDLLNENKEPLHDEPIYIHQSKDDIEV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LS
Sbjct: 263 EIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLS 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I
Sbjct: 322 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRII 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 382 VEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 442 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 501 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K + +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F L
Sbjct: 561 LDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSMMQVRLEDAIDADQTFEML 620
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 621 MGDVVENRRQFIEDNAVYANLD 642
>gi|407980739|ref|ZP_11161515.1| DNA gyrase subunit B [Bacillus sp. HYC-10]
gi|407412505|gb|EKF34300.1| DNA gyrase subunit B [Bacillus sp. HYC-10]
Length = 638
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 252/503 (50%), Positives = 344/503 (68%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q++ RG PV L + D GT F PD ++FT +FD++T+A R+RELAF
Sbjct: 143 HYQQFKRGVPVGDLKV----IGETDVTGTTTHFVPDPEIFTETTEFDYDTLANRVRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED K + NEY + GG++ YV+ LN K+ +H+ V + DGIT+
Sbjct: 199 LTKGVNIVI--EDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEEPVYIEGEKDGITV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + +AN+I T +GGTH G K LTR +N +K+ KD D +LS
Sbjct: 257 EVALQY-NDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKNGVFKDGDSNLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IIS++ P+P+FEGQTKT+LGN E R + D E L ++L +PD I
Sbjct: 316 GEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEKFLLENPDAAKKI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 376 VEKGLMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 436 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D +
Sbjct: 495 KIVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRVEYVYNDKQ 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ + P +QR+KGLGEM QLWETT++P+ R L Q+ +EDA +A+ F L
Sbjct: 555 LDELLKTLPQTPKPGLQRYKGLGEMNASQLWETTMDPDARTLLQVTLEDAIDADETFEML 614
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V+ R+ I +NA + NLD
Sbjct: 615 MGDKVEPRRNFIEENAQYVKNLD 637
>gi|294496880|ref|YP_003560580.1| DNA gyrase subunit B [Bacillus megaterium QM B1551]
gi|294346817|gb|ADE67146.1| DNA gyrase, B subunit [Bacillus megaterium QM B1551]
Length = 638
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 247/503 (49%), Positives = 349/503 (69%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L V D+ GT I+F PD ++FT +++D +T+A R+RELAF
Sbjct: 144 HYQKYERGVPAADLKV----VGETDKTGTVIQFRPDGEIFTETLEYDFDTLANRLRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I + + E+++ EY + GG++ YV+ LN K+ +H+ + + D I++
Sbjct: 200 LNRGIKITI---EDKREEDKRREYHYEGGIKSYVEHLNRSKEVIHEEPIYIEGNRDNISV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+Y+ + +AN+I T +GGTH G K +LTR +N +K+ KD D +L+
Sbjct: 257 EIAIQY-NDSYTSNLYSFANNIHTYEGGTHEAGFKTALTRVINDYARKNSVFKDSDANLT 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG+T IIS++ P+P+FEGQTKT+LGN E R + D E+L YL +P V +
Sbjct: 316 GEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDSVFAEHLETYLLENPIVAKKV 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE+++VEGDSAGGS
Sbjct: 376 IEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYVVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R FQAILPLRGKI+NVE+ + N EI+ +I ALG G+ G+DF RYH
Sbjct: 436 AKQGRSRHFQAILPLRGKIINVEKARLDKILSNNEIRTIITALGTGI-GDDFDISKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV +GK+V+Y Y+D +
Sbjct: 495 KIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYVYIAQPPLYKVSQGKKVEYAYNDRQ 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++V +SFP A ++QR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F L
Sbjct: 555 LEEVLASFPEGAKPNLQRYKGLGEMNPEQLWETTMDPEFRTLLQVNLQDAIEADETFEIL 614
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V+ R+ I +NA + NLD
Sbjct: 615 MGDKVEPRRNFIEENAQYVKNLD 637
>gi|384049352|ref|YP_005497369.1| DNA gyrase subunit B [Bacillus megaterium WSH-002]
gi|345447043|gb|AEN92060.1| DNA gyrase subunit B [Bacillus megaterium WSH-002]
Length = 643
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 247/503 (49%), Positives = 349/503 (69%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L V D+ GT I+F PD ++FT +++D +T+A R+RELAF
Sbjct: 149 HYQKYERGVPAADLKV----VGETDKTGTVIQFHPDGEIFTETLEYDFDTLANRLRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I + + E+++ EY + GG++ YV+ LN K+ +H+ + + D I++
Sbjct: 205 LNRGIKITI---EDKREEDKRREYHYEGGIKSYVEHLNRSKEVIHEEPIYIEGNRDNISV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+Y+ + +AN+I T +GGTH G K +LTR +N +K+ KD D +L+
Sbjct: 262 EIAIQY-NDSYTSNLYSFANNIHTYEGGTHEAGFKTALTRVINDYARKNSVFKDSDANLT 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG+T IIS++ P+P+FEGQTKT+LGN E R + D E+L YL +P V +
Sbjct: 321 GEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDSVFAEHLETYLLENPIVAKKV 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE+++VEGDSAGGS
Sbjct: 381 IEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYVVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R FQAILPLRGKI+NVE+ + N EI+ +I ALG G+ G+DF RYH
Sbjct: 441 AKQGRSRHFQAILPLRGKIINVEKARLDKILSNNEIRTIITALGTGI-GDDFDISKARYH 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV +GK+V+Y Y+D +
Sbjct: 500 KIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYVYIAQPPLYKVSQGKKVEYAYNDRQ 559
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++V +SFP A ++QR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F L
Sbjct: 560 LEEVLASFPEGAKPNLQRYKGLGEMNPEQLWETTMDPEFRTLLQVNLQDAIEADETFEIL 619
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V+ R+ I +NA + NLD
Sbjct: 620 MGDKVEPRRNFIEENAQYVKNLD 642
>gi|295702247|ref|YP_003595322.1| DNA gyrase subunit B [Bacillus megaterium DSM 319]
gi|294799906|gb|ADF36972.1| DNA gyrase, B subunit [Bacillus megaterium DSM 319]
Length = 638
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 247/503 (49%), Positives = 349/503 (69%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L V D+ GT I+F PD ++FT +++D +T+A R+RELAF
Sbjct: 144 HYQKYERGVPAADLKV----VGETDKTGTVIQFHPDGEIFTETLEYDFDTLANRLRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I + + E+++ EY + GG++ YV+ LN K+ +H+ + + D I++
Sbjct: 200 LNRGIKITI---EDKREEDKRREYHYEGGIKSYVEHLNRAKEVIHEEPIYIEGNRDNISV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+Y+ + +AN+I T +GGTH G K +LTR +N +K+ KD D +L+
Sbjct: 257 EIAIQY-NDSYTSNLYSFANNIHTYEGGTHEAGFKTALTRVINDYARKNSVFKDSDANLT 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG+T IIS++ P+P+FEGQTKT+LGN E R + D E+L YL +P V +
Sbjct: 316 GEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDSVFAEHLETYLLENPIVAKKV 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE+++VEGDSAGGS
Sbjct: 376 IEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYVVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R FQAILPLRGKI+NVE+ + N EI+ +I ALG G+ G+DF RYH
Sbjct: 436 AKQGRSRHFQAILPLRGKIINVEKARLDKILSNNEIRTIITALGTGI-GDDFDISKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV +GK+V+Y Y+D +
Sbjct: 495 KIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYVYIAQPPLYKVSQGKKVEYAYNDRQ 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++V +SFP A ++QR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F L
Sbjct: 555 LEEVLASFPEGAKPNLQRYKGLGEMNPEQLWETTMDPEFRTLLQVNLQDAIEADETFEIL 614
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V+ R+ I +NA + NLD
Sbjct: 615 MGDKVEPRRNFIEENAQYVKNLD 637
>gi|223043343|ref|ZP_03613389.1| DNA gyrase, B subunit [Staphylococcus capitis SK14]
gi|417906712|ref|ZP_12550492.1| DNA gyrase, B subunit [Staphylococcus capitis VCU116]
gi|222443132|gb|EEE49231.1| DNA gyrase, B subunit [Staphylococcus capitis SK14]
gi|341597523|gb|EGS40077.1| DNA gyrase, B subunit [Staphylococcus capitis VCU116]
Length = 639
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 335/502 (66%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 145 YHQAYKKGVPQFDLK----EIGETDQTGTAIRFKADGEIFTETTVYNYETLQQRIRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E + + Y + GG++ YV+ LN +K+PLH+ + + D I +
Sbjct: 201 LNKGIQITLRDEREEEGRED--SYHYEGGIKSYVELLNENKEPLHEEPIYIHQTKDDIEV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LS
Sbjct: 259 EIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRILNSYGIQSKIIKEDKDKLS 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT IIS++ +P+FEGQTKT+LGN EVR+VVD+ EY +L HP V I
Sbjct: 318 GEDTREGLTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFAEYFERFLFEHPAVGRII 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 378 VEKGVMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 438 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 497 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K+ +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F L
Sbjct: 557 LDKLKAELNPTPKWSISRYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEML 616
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 617 MGDVVENRRQFIEDNAVYANLD 638
>gi|314934956|ref|ZP_07842315.1| DNA gyrase, B subunit [Staphylococcus caprae C87]
gi|313652886|gb|EFS16649.1| DNA gyrase, B subunit [Staphylococcus caprae C87]
Length = 644
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 335/502 (66%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 150 YHQAYKKGVPQFDLK----EIGETDQTGTAIRFKADGEIFTETTVYNYETLQQRIRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E + + Y + GG++ YV+ LN +K+PLH+ + + D I +
Sbjct: 206 LNKGIQITLRDEREEEGRED--SYHYEGGIKSYVELLNENKEPLHEEPIYIHQTKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LS
Sbjct: 264 EIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRILNSYGIQSKIIKEDKDKLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT IIS++ +P+FEGQTKT+LGN EVR+VVD+ EY +L HP V I
Sbjct: 323 GEDTREGLTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFAEYFERFLFEHPAVGRII 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 383 VEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K+ +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F L
Sbjct: 562 LDKLKAELNPTPKWSISRYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|419770807|ref|ZP_14296873.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-K]
gi|383362634|gb|EID39981.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-K]
Length = 643
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 250/502 (49%), Positives = 335/502 (66%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + D+ GT IRF DK++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L+ E + + Y + GG++ YV LN +K+PLHD + + D I +
Sbjct: 205 LNKGIQITLKDEREEEVRED--SYHYEGGIKSYVDLLNENKEPLHDEPIYIHQSKDDIEV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LS
Sbjct: 263 EIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLS 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I
Sbjct: 322 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRII 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 382 VEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 442 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 501 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K + +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F L
Sbjct: 561 LDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEML 620
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 621 MGDVVENRRQFIEDNAVYANLD 642
>gi|420218947|ref|ZP_14723991.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIH04008]
gi|394291351|gb|EJE35167.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIH04008]
Length = 588
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 251/502 (50%), Positives = 337/502 (67%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + D+ GT IRF DK++FT +++ T+ RIRELAF
Sbjct: 94 YHQAYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAF 149
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L+ E E+ + + Y + GG++ YV LN +K+PLHD + + D I +
Sbjct: 150 LNKGIQITLKDERE--EEVREDSYHYEGGIKSYVDLLNENKEPLHDEPIYIHQSKDDIEV 207
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LS
Sbjct: 208 EIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLS 266
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I
Sbjct: 267 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRII 326
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 327 VEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGS 386
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 387 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 445
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 446 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 505
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K + +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F L
Sbjct: 506 LDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEML 565
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 566 MGDVVENRRQFIEDNAVYANLD 587
>gi|194016365|ref|ZP_03054979.1| DNA gyrase, B subunit [Bacillus pumilus ATCC 7061]
gi|194011838|gb|EDW21406.1| DNA gyrase, B subunit [Bacillus pumilus ATCC 7061]
Length = 640
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 250/503 (49%), Positives = 345/503 (68%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q++ RG PV L + D GT F PD ++FT I+FD++T+A R+RELAF
Sbjct: 145 HYQQFKRGVPVGDLEI----IGETDVTGTTTHFVPDTEIFTETIEFDYDTLANRVRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED K + NEY + GG++ YV+ LN K+ +H+ V + DGIT+
Sbjct: 201 LTKGVNIVI--EDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEEPVYIEGEKDGITV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + +AN+I T +GGTH G K LTR +N +K+ KD D +LS
Sbjct: 259 EVALQY-NDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKNGVFKDGDSNLS 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IIS++ P+P+FEGQTKT+LGN E R + D E L ++L +PD I
Sbjct: 318 GEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEKFLLENPDAAKKI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 378 VEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELYIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 438 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPL+KV++GK+V+Y Y+D +
Sbjct: 497 KVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLFKVQQGKRVEYVYNDKQ 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ + P +QR+KGLGEM QLWETT++P+ R L Q+ +EDA +A+ F L
Sbjct: 557 LDELLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPDARTLLQVTLEDAIDADETFEML 616
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V+ R+ I +NA + NLD
Sbjct: 617 MGDKVEPRRNFIEENAQYVKNLD 639
>gi|414160151|ref|ZP_11416422.1| DNA gyrase subunit B [Staphylococcus simulans ACS-120-V-Sch1]
gi|410878801|gb|EKS26671.1| DNA gyrase subunit B [Staphylococcus simulans ACS-120-V-Sch1]
Length = 639
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/502 (49%), Positives = 333/502 (66%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q Y RG P L V + GT IRF D ++FT + + + RIRELAF
Sbjct: 145 YNQAYKRGVPQYDLKV----VGETEHTGTEIRFKADPEIFTETTTYQYELLQKRIRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKD-VDGITI 121
LN + + LR E + K + Y + GG++ YV+ +N +K+PL D + D D + +
Sbjct: 201 LNKGIQLTLRDERGEEVKE--DSYHYEGGIKSYVELINENKEPLFDEPVYLHDRKDDVEV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S +S +L YAN+I T +GGTH +G K +LTR LNS G + +KD LS
Sbjct: 259 EIALQYNS-GFSTNLLSYANNIHTYEGGTHEDGFKRALTRVLNSYGIQQGIMKDDKERLS 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ NP+FEGQTKT+LGN EVR++VD+ E + +L HP V I
Sbjct: 318 GEDTREGLTAVVSIKHSNPQFEGQTKTKLGNSEVRQIVDRLFTEDMERFLLEHPQVARII 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIFIVEGDSAGGS
Sbjct: 378 VEKGMMASRARIAAKKAREVTRRKSALEVSSLPGKLADCSSKNPEESEIFIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+++I A G G+ GE+F RYH
Sbjct: 438 TKLGRDSRTQAILPLRGKILNVEKSRLDRILNNNEIRSMITAFGTGI-GEEFDISKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPL+K+ +GKQ Y +++ E
Sbjct: 497 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLFKLTQGKQKYYVFNERE 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+K+KS +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA EA++ F L
Sbjct: 557 LEKLKSELKPTPKWSIARYKGLGEMDADQLWETTMNPEHRSMLQVTLEDAIEADLTFEML 616
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I+ A NLD
Sbjct: 617 MGDVVENRRQFIEENAVYANLD 638
>gi|27466922|ref|NP_763559.1| DNA gyrase subunit B [Staphylococcus epidermidis ATCC 12228]
gi|57865927|ref|YP_190090.1| DNA gyrase, B subunit [Staphylococcus epidermidis RP62A]
gi|251811368|ref|ZP_04825841.1| DNA gyrase subunit B [Staphylococcus epidermidis BCM-HMP0060]
gi|282874725|ref|ZP_06283604.1| DNA gyrase, B subunit [Staphylococcus epidermidis SK135]
gi|293367576|ref|ZP_06614229.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
epidermidis M23864:W2(grey)]
gi|417647460|ref|ZP_12297298.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU144]
gi|417656803|ref|ZP_12306482.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU028]
gi|417659128|ref|ZP_12308738.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU045]
gi|417909208|ref|ZP_12552947.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU037]
gi|417911948|ref|ZP_12555645.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU105]
gi|417912698|ref|ZP_12556384.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU109]
gi|418325276|ref|ZP_12936483.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU071]
gi|418604519|ref|ZP_13167866.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU041]
gi|418608801|ref|ZP_13171981.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU065]
gi|418612386|ref|ZP_13175430.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU117]
gi|418617359|ref|ZP_13180257.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU120]
gi|418621984|ref|ZP_13184746.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU123]
gi|418624284|ref|ZP_13186961.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU125]
gi|418626542|ref|ZP_13189140.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU126]
gi|418664988|ref|ZP_13226448.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU081]
gi|419769996|ref|ZP_14296084.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-250]
gi|420172895|ref|ZP_14679392.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM067]
gi|420181842|ref|ZP_14688001.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM049]
gi|420186258|ref|ZP_14692330.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM040]
gi|420188871|ref|ZP_14694872.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM039]
gi|420194332|ref|ZP_14700147.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM021]
gi|420197594|ref|ZP_14703317.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM020]
gi|420207785|ref|ZP_14713271.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM008]
gi|420215373|ref|ZP_14720642.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIH05005]
gi|420216527|ref|ZP_14721734.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIH05001]
gi|420222776|ref|ZP_14727691.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIH08001]
gi|420224635|ref|ZP_14729475.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIH06004]
gi|420227733|ref|ZP_14732497.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIH05003]
gi|420230696|ref|ZP_14735375.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIH04003]
gi|420233032|ref|ZP_14737654.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIH051668]
gi|421608632|ref|ZP_16049848.1| DNA gyrase subunit B [Staphylococcus epidermidis AU12-03]
gi|38604835|sp|Q8CQK4.1|GYRB_STAES RecName: Full=DNA gyrase subunit B
gi|81819302|sp|Q5HK03.1|GYRB_STAEQ RecName: Full=DNA gyrase subunit B
gi|27314464|gb|AAO03601.1|AE016744_4 DNA gyrase subunit B [Staphylococcus epidermidis ATCC 12228]
gi|57636585|gb|AAW53373.1| DNA gyrase, B subunit [Staphylococcus epidermidis RP62A]
gi|251805117|gb|EES57774.1| DNA gyrase subunit B [Staphylococcus epidermidis BCM-HMP0060]
gi|281296441|gb|EFA88956.1| DNA gyrase, B subunit [Staphylococcus epidermidis SK135]
gi|291318289|gb|EFE58682.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
epidermidis M23864:W2(grey)]
gi|329724157|gb|EGG60675.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU144]
gi|329735731|gb|EGG72012.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU028]
gi|329736056|gb|EGG72329.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU045]
gi|341651705|gb|EGS75502.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU105]
gi|341653799|gb|EGS77565.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU037]
gi|341657190|gb|EGS80883.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU109]
gi|365228525|gb|EHM69706.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU071]
gi|374404742|gb|EHQ75710.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU041]
gi|374409769|gb|EHQ80544.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU081]
gi|374409806|gb|EHQ80580.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU065]
gi|374818652|gb|EHR82802.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU120]
gi|374819688|gb|EHR83808.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU117]
gi|374828008|gb|EHR91858.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU125]
gi|374828054|gb|EHR91901.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU123]
gi|374831612|gb|EHR95349.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU126]
gi|383357678|gb|EID35145.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-250]
gi|394241161|gb|EJD86579.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM067]
gi|394250949|gb|EJD96080.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM049]
gi|394252623|gb|EJD97652.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM040]
gi|394253830|gb|EJD98820.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM039]
gi|394264909|gb|EJE09577.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM021]
gi|394265695|gb|EJE10346.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM020]
gi|394275018|gb|EJE19410.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM008]
gi|394282349|gb|EJE26550.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIH05005]
gi|394288730|gb|EJE32634.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIH08001]
gi|394291788|gb|EJE35574.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIH05001]
gi|394294485|gb|EJE38164.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIH06004]
gi|394296118|gb|EJE39748.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIH04003]
gi|394296584|gb|EJE40209.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIH05003]
gi|394300592|gb|EJE44086.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIH051668]
gi|406655792|gb|EKC82215.1| DNA gyrase subunit B [Staphylococcus epidermidis AU12-03]
Length = 643
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 250/502 (49%), Positives = 335/502 (66%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + D+ GT IRF DK++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L+ E + + Y + GG++ YV LN +K+PLHD + + D I +
Sbjct: 205 LNKGIQITLKDEREEEVRED--SYHYEGGIKSYVDLLNENKEPLHDEPIYIHQSKDDIEV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LS
Sbjct: 263 EIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLS 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I
Sbjct: 322 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRII 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 382 VEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 442 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 501 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K + +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F L
Sbjct: 561 LDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEML 620
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 621 MGDVVENRRQFIEDNAVYANLD 642
>gi|224541292|ref|ZP_03681831.1| hypothetical protein CATMIT_00452 [Catenibacterium mitsuokai DSM
15897]
gi|224525796|gb|EEF94901.1| DNA gyrase, B subunit [Catenibacterium mitsuokai DSM 15897]
Length = 641
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/504 (49%), Positives = 339/504 (67%), Gaps = 9/504 (1%)
Query: 3 YHQKYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
Y+Q++ G PV +L V+ ++ GT + F D ++FT +D+ ++ R+RELA
Sbjct: 143 YYQRFENGGTPVGSLK--VVGDCEQEETGTTVVFKADPEIFTETTVYDYGVLSQRLRELA 200
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
FLN L + L E DP K +EY + GGL EYV +LN +K PLHD ++ ++ I+
Sbjct: 201 FLNKGLKLVLEDERLDPAK--VDEYHYEGGLREYVAFLNKNKTPLHDHIIDCEDTMNDIS 258
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q+ +D Y + + N+I T +GGTH EG + +LTR +N+ K +KDKD SL
Sbjct: 259 VEIAMQY-NDGYQPNIYSFCNNINTHEGGTHEEGFRLALTRVINNYAKSHNFLKDKDESL 317
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ REGLT I+SV+ P+P++EGQTKT+LGN EVRK+V + L ++L +PD
Sbjct: 318 SGDDCREGLTAIVSVKHPDPQYEGQTKTKLGNAEVRKIVSTILANALDKFLLENPDTAKI 377
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K A KA +AAKRAR++ R+K+ L S+LPGKLADCSS P E EIFIVEGDSAGG
Sbjct: 378 IMDKVTLASKARMAAKRAREMTRRKTALDVSNLPGKLADCSSKDPSECEIFIVEGDSAGG 437
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GRDR+ QAILPLRGKILNVE+ + N EI+++I A G G+ G++F LRY
Sbjct: 438 SAKSGRDRKIQAILPLRGKILNVEKARLERILGNAEIRSMITAFGTGI-GDEFDINKLRY 496
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKI+I+TDADVDG HIR L+LTF YRY K L + G +Y PPLY + GK Y Y D
Sbjct: 497 HKIVIMTDADVDGGHIRILMLTFLYRYLKPLIENGYVYAAQPPLYLLRHGKDDHYLYSDY 556
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL K+K NA Y+IQR+KGLGEM P QLWETT+NPE R+L ++ ++DA +A+ +F
Sbjct: 557 ELDKLKEELGPNAKYTIQRYKGLGEMNPEQLWETTMNPENRVLNRIQLDDAMQADQLFDM 616
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG RV+ R++ I +NA + NLD
Sbjct: 617 LMGERVEPRRDFIRENAKYVENLD 640
>gi|418328445|ref|ZP_12939557.1| DNA gyrase, B subunit [Staphylococcus epidermidis 14.1.R1.SE]
gi|365231970|gb|EHM72986.1| DNA gyrase, B subunit [Staphylococcus epidermidis 14.1.R1.SE]
Length = 643
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 250/502 (49%), Positives = 335/502 (66%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + D+ GT IRF DK++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L+ E + + Y + GG++ YV LN +K+PLHD + + D I +
Sbjct: 205 LNKGIQITLKDEREEEIRED--SYHYEGGIKSYVDLLNENKEPLHDEPIYIHQSKDDIEV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LS
Sbjct: 263 EIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLS 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I
Sbjct: 322 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRII 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 382 VEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 442 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 501 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K + +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F L
Sbjct: 561 LDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEML 620
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 621 MGDVVENRRQFIEDNAVYANLD 642
>gi|242243251|ref|ZP_04797696.1| DNA gyrase subunit B [Staphylococcus epidermidis W23144]
gi|416127533|ref|ZP_11596941.1| DNA gyrase, B subunit [Staphylococcus epidermidis FRI909]
gi|418631677|ref|ZP_13194129.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU128]
gi|420176465|ref|ZP_14682885.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM061]
gi|420178304|ref|ZP_14684636.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM057]
gi|420180889|ref|ZP_14687098.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM053]
gi|420192455|ref|ZP_14698314.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM023]
gi|420200868|ref|ZP_14706507.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM031]
gi|242233200|gb|EES35512.1| DNA gyrase subunit B [Staphylococcus epidermidis W23144]
gi|319399910|gb|EFV88156.1| DNA gyrase, B subunit [Staphylococcus epidermidis FRI909]
gi|374834345|gb|EHR97993.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU128]
gi|394241009|gb|EJD86430.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM061]
gi|394246494|gb|EJD91750.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM057]
gi|394248368|gb|EJD93606.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM053]
gi|394261185|gb|EJE05985.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM023]
gi|394267464|gb|EJE12054.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM031]
Length = 643
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 250/502 (49%), Positives = 335/502 (66%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + D+ GT IRF DK++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L+ E + + Y + GG++ YV LN +K+PLHD + + D I +
Sbjct: 205 LNKGIQITLKDEREEEVRED--SYHYEGGIKSYVDLLNENKEPLHDEPIYIHQSKDDIEV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LS
Sbjct: 263 EIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLS 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I
Sbjct: 322 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRII 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 382 VEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 442 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 501 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K + +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F L
Sbjct: 561 LDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEML 620
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 621 MGDVVENRRQFIEDNAVYANLD 642
>gi|296452676|ref|ZP_06894367.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium
difficile NAP08]
gi|296880071|ref|ZP_06904040.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium
difficile NAP07]
gi|296258458|gb|EFH05362.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium
difficile NAP08]
gi|296428938|gb|EFH14816.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium
difficile NAP07]
Length = 633
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 251/503 (49%), Positives = 341/503 (67%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y +G P + L V +GT I+F PD+ +F I+F + T+ R+REL+F
Sbjct: 140 YKQTYEKGLPTSKLEV----VGESHDKGTMIQFMPDETIFD-EIEFKYETLEYRLRELSF 194
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I ED + + E+ + GGL EY+++LN + +HD +V K VD +
Sbjct: 195 LNKGIKIVF--EDKREGQEKRKEFHYTGGLVEYIKYLNKSRTGIHDDIVYIDKKVDDCFV 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+LA+Q+ +D Y++ + +AN+I T +GG+H+ G KA+LT+T+N K++K +K+ D++L
Sbjct: 253 ELAMQY-TDGYTENIYSFANNINTHEGGSHLSGFKAALTKTVNDYAKRNKFLKENDVNLL 311
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT ++SV++P P+FEGQTKT+LGN +R +VD + L +LE +P I
Sbjct: 312 GEDIREGLTAVVSVKLPEPQFEGQTKTKLGNSFMRGIVDSVTVDELGSFLEENPVTARII 371
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AAK+AR+L R+KSVL S+SLPGKLADC+ P +SEIF+VEGDSAGGS
Sbjct: 372 VDKALRAQRAREAAKKARELTRRKSVLESTSLPGKLADCAEKDPAKSEIFLVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR QAILPLRGKILNVE+ + ++EI+N+I A G G+ GEDF + RYH
Sbjct: 432 AKQGRDRNSQAILPLRGKILNVEKSRLDRILSSDEIKNMITAYGCGI-GEDFDIDKARYH 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFF+RY + L DEG +Y PPLYKV + K+ Y Y D E
Sbjct: 491 KIIIMTDADVDGAHIRTLLLTFFFRYMRPLIDEGYVYAAQPPLYKVTKQKKEHYVYSDKE 550
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + N + +QR+KGLGEM QLWETT+NPE R L Q+ +EDAA A+ VFS L
Sbjct: 551 LNILLDEIGRNGV-ELQRYKGLGEMNAEQLWETTMNPETRTLLQVTVEDAAIADEVFSML 609
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V RKE I+ A V NLD
Sbjct: 610 MGDKVAPRKEFIEENARFVRNLD 632
>gi|410453633|ref|ZP_11307580.1| DNA gyrase subunit B [Bacillus bataviensis LMG 21833]
gi|409932961|gb|EKN69911.1| DNA gyrase subunit B [Bacillus bataviensis LMG 21833]
Length = 640
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/503 (49%), Positives = 349/503 (69%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++ K+ RG V L + + D GT F PD ++FT ++++++ +A RIRELAF
Sbjct: 146 HYIKFERGAVVKELAV----IGTTDHTGTITHFKPDSEIFTETLEYEYDILATRIRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN L I + ED E N+ NEY + GG++ YV+ LN K+ +HD + + DGI++
Sbjct: 202 LNRGLKITI--EDKRVE-NKRNEYHYEGGIKSYVEHLNRTKEVIHDEPIYMEGEKDGISV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ ++ Y+D + +AN+I T +GGTH G K +LTR +N +K+ +K+ D +LS
Sbjct: 259 EVALQY-NEGYTDNIYSFANNIHTYEGGTHESGFKTALTRVINDYARKNGLIKENDTNLS 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG+T I+S++ P+P+FEGQTKT+LGN EVR + D +++ +P V I
Sbjct: 318 GEDVREGITAIVSIKHPDPQFEGQTKTKLGNSEVRAITDTVFASTFDKFMLENPTVAKKI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A LAAK+AR+L R+KS L SSLPGKLADCSS P ESE+FIVEGDSAGGS
Sbjct: 378 VEKGLMAARARLAAKKARELTRRKSALEVSSLPGKLADCSSKDPAESEMFIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++ +I A+G G+ GEDF RYH
Sbjct: 438 AKQGRDRHFQAILPLRGKILNVEKARLDRILSNLEVRAMITAIGTGI-GEDFDIAKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYKV++GK+++Y Y+D E
Sbjct: 497 KVVIMTDADVDGAHIRTLLLTFFYRFMRKLIEAGYVYIAQPPLYKVQQGKRIEYAYNDKE 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ + P+ +IQR+KGLGEM P QLW+TT+NPE R + Q+ +EDA EA+ F L
Sbjct: 557 LERIFAELPATPKPNIQRYKGLGEMNPEQLWDTTMNPEGRSMLQVSLEDAIEADETFDML 616
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V+ R+ I +NA + NLD
Sbjct: 617 MGEKVEPRRNFIEENAQYVKNLD 639
>gi|269791748|ref|YP_003316652.1| DNA gyrase subunit B [Thermanaerovibrio acidaminovorans DSM 6589]
gi|269099383|gb|ACZ18370.1| DNA gyrase, B subunit [Thermanaerovibrio acidaminovorans DSM 6589]
Length = 636
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/504 (48%), Positives = 346/504 (68%), Gaps = 12/504 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E+ Q Y RG PVT L + DR+GT++ F PD ++F+T ++F +T+ GR+RELA
Sbjct: 142 EHRQSYRRGVPVTDLIAG----EDTDRRGTKVHFMPDGEIFST-LEFSADTLIGRLRELA 196
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGIT 120
FLNP +TI R DP + + F GG+ +V++LN K+ L + + + DG+
Sbjct: 197 FLNPGVTIVFRDLRQDPPMER--KLHFEGGIRSFVEYLNRGKEVLFSPPMVVKGEKDGVI 254
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++ALQ+ +D Y + + +AN I T++GGTH+ G + +LTR +N +K K +KDKD +
Sbjct: 255 VEVALQY-NDTYLERIFAFANLINTVEGGTHVSGFRTALTRLINDQARKEKLLKDKDPNF 313
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
+G+ ++EGLT +ISV++ P+FEGQTKT+LGN +V+ +VD V E L LE P +L
Sbjct: 314 TGDDLKEGLTAVISVKLLEPQFEGQTKTKLGNGDVKGIVDSVVYEGLKVILEDQPQILRP 373
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
++ K++ A +A AAK+ARDLVR+KS + LPGKLADCS+ PEE E++IVEGDSAGG
Sbjct: 374 VVEKAVKARQAREAAKKARDLVRRKSAMSGMDLPGKLADCSNRRPEECELYIVEGDSAGG 433
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GRDR FQAILPLRGKILNVE+ + N++++ +I+ALG GV G++F LRY
Sbjct: 434 SAKMGRDRSFQAILPLRGKILNVEKARLDKILSNDQVRTIIQALGCGV-GDEFDYSKLRY 492
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKI ++ DADVDGAHIRTLLLT F+RY + + G +YV PPLY+V+ GK V YCY D
Sbjct: 493 HKIFLMADADVDGAHIRTLLLTLFFRYMPQIIENGHLYVAQPPLYRVQEGKNVHYCYSDR 552
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
ELK++ S S+QR+KGLGEM P QLWETT++P R++K++ IEDA A+ +FS
Sbjct: 553 ELKEIMQRL-SGRKASVQRYKGLGEMNPEQLWETTMDPANRVIKRVEIEDAVLADELFSV 611
Query: 481 LMGARVDTRKELIQ-NAANLVNLD 503
LMG V+ R+E I+ +A + NLD
Sbjct: 612 LMGDAVEPRREFIEAHAKEVRNLD 635
>gi|347751700|ref|YP_004859265.1| DNA gyrase subunit B [Bacillus coagulans 36D1]
gi|347584218|gb|AEP00485.1| DNA gyrase, B subunit [Bacillus coagulans 36D1]
Length = 641
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 250/504 (49%), Positives = 344/504 (68%), Gaps = 12/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+QKY RGKP L + DR GT F PD ++FT +FD + + R+RELAF
Sbjct: 146 YYQKYRRGKPAFDLKI----IGETDRTGTTTHFKPDPEIFTETTEFDFDILTTRLRELAF 201
Query: 63 LNPKLTIALR-KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
LN + I + K + +P K EY + GG++ YV+ LN K+ LH + + + DGIT
Sbjct: 202 LNKGIKITIEDKREKNPRKQ---EYHYEGGIKSYVEHLNRSKEVLHKEPIYVEGEKDGIT 258
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
++++LQ+ +D ++ + +AN+I T +GGTH G K +LTR +N +K+ +K+ + +L
Sbjct: 259 VEVSLQY-NDGFASNIYSFANNIHTYEGGTHESGFKTALTRVINDYARKNNLIKENEANL 317
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
+GE VREGLT I+S++ P+P+FEGQTKT+LGN E R + D E +++ +P V
Sbjct: 318 TGEDVREGLTAIVSIKHPDPQFEGQTKTKLGNTEARTITDAVFSETFEKFMMENPQVARK 377
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K L A +A +AAK+AR+L R+KS L S+SLPGKLADC+S P ESE++IVEGDSAGG
Sbjct: 378 IVEKGLMAARARMAAKKARELTRRKSALESTSLPGKLADCTSRDPAESELYIVEGDSAGG 437
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILPLRGKILNVE+ + N EI+ +I ALG GV GEDF RY
Sbjct: 438 SAKQGRDRMFQAILPLRGKILNVEKARLDKILSNAEIRTIITALGTGV-GEDFDISKARY 496
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK++I+TDADVDGAHIRTLLLTFFYRY + L D G IY+ PPLYKV++GK+V+Y Y D
Sbjct: 497 HKVVIMTDADVDGAHIRTLLLTFFYRYMRPLIDAGYIYIAQPPLYKVQQGKRVEYVYSDR 556
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L+++ ++ P+ +IQR+KGLGEM P QLWETT+ P R + Q+ ++DA EA+ F
Sbjct: 557 GLEELLNTLPAQPKPAIQRYKGLGEMNPEQLWETTMEPANRTMLQVSLDDAIEADGTFEM 616
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R+ I +NA + NLD
Sbjct: 617 LMGDKVEPRRNFIEENAIYVKNLD 640
>gi|148269239|ref|YP_001243699.1| DNA gyrase subunit B [Thermotoga petrophila RKU-1]
gi|147734783|gb|ABQ46123.1| DNA gyrase subunit B [Thermotoga petrophila RKU-1]
Length = 636
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/513 (48%), Positives = 354/513 (69%), Gaps = 23/513 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGKPVT + + D+ GT +RF PD +F+ +FD + + R+RE+AF
Sbjct: 139 YRQRYERGKPVTPVEV----IGETDKHGTIVRFKPDPLIFSET-EFDPDVLEHRLREIAF 193
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-------- 114
L P L I E D + + F GG+ EYV++LN KK LHDV+ ++
Sbjct: 194 LVPGLKI----EFEDRINGEKKTFKFDGGIVEYVKYLNRGKKALHDVIHIKRTEKVKTKN 249
Query: 115 DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK 174
D + +++A Q+ +D+YS+ ++ +AN+I+T+DGGTH+ K++LTR +N GKK +K
Sbjct: 250 GEDEVIVEIAFQY-TDSYSEDIVSFANTIKTVDGGTHVTAFKSTLTRLMNEYGKKHNFLK 308
Query: 175 DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELH 234
KD S GE VREGLT +ISV V NPEFEGQTK++LGN EV++ V ++++E L + + +
Sbjct: 309 -KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAMREELKKIFDAN 367
Query: 235 PDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVE 294
D++ +ILSK +S +A AAKRAR++VR+K+VL++++LPGKLADCSST E++E+FIVE
Sbjct: 368 SDLVKAILSKIMSTKQAREAAKRAREMVRRKNVLQNTALPGKLADCSSTHREKTELFIVE 427
Query: 295 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 354
GDSAGGSAKQ RDR FQA+LP+RGKILNVE+ + KNE+I ++I A+G G+ G+DF
Sbjct: 428 GDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVAVGTGI-GDDFD 486
Query: 355 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY +III+TDAD+DGAHIRTLLLT FYRY + L ++G +Y+ +PPLY+++ G++
Sbjct: 487 ESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPPLYRIKAGREEF 546
Query: 415 YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
Y Y D EL + K + IQR+KGLGEM P QLWETT+NPE R + ++ IEDA EA
Sbjct: 547 YVYSDQELAEYKEKLQGKRI-EIQRYKGLGEMNPEQLWETTMNPETRKIIRVTIEDAEEA 605
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ +F LMG +R+E I+ A + + LDI
Sbjct: 606 DRLFEILMGNDPSSRREFIERHA--LKVKELDI 636
>gi|418615337|ref|ZP_13178282.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU118]
gi|418634910|ref|ZP_13197301.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU129]
gi|420166072|ref|ZP_14672760.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM088]
gi|420190648|ref|ZP_14696589.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM037]
gi|420205714|ref|ZP_14711237.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM015]
gi|420209623|ref|ZP_14715059.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM003]
gi|420211483|ref|ZP_14716842.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM001]
gi|420235726|ref|ZP_14740262.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIH051475]
gi|374817511|gb|EHR81691.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU118]
gi|374836452|gb|EHS00040.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU129]
gi|394234127|gb|EJD79712.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM088]
gi|394258581|gb|EJE03461.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM037]
gi|394269399|gb|EJE13933.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM015]
gi|394278520|gb|EJE22835.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM003]
gi|394280818|gb|EJE25089.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM001]
gi|394302395|gb|EJE45840.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIH051475]
Length = 643
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 250/502 (49%), Positives = 335/502 (66%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + D+ GT IRF DK++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKQGVPQFDLK----EIGDTDKTGTVIRFKADKEIFTETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L+ E + + Y + GG++ YV LN +K+PLHD + + D I +
Sbjct: 205 LNKGIQITLKDEREEEVRED--SYHYEGGIKSYVDLLNENKEPLHDEPIYIHQSKDDIEV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LS
Sbjct: 263 EIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLS 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I
Sbjct: 322 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRII 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 382 VEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 442 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 501 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K + +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F L
Sbjct: 561 LDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEML 620
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 621 MGDVVENRRQFIEDNAVYANLD 642
>gi|418412794|ref|ZP_12986045.1| DNA gyrase subunit B [Staphylococcus epidermidis BVS058A4]
gi|410883855|gb|EKS31687.1| DNA gyrase subunit B [Staphylococcus epidermidis BVS058A4]
Length = 643
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/502 (49%), Positives = 335/502 (66%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + D+ GT IRF DK++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L+ E + + Y + GG++ Y+ LN +K+PLHD + + D I +
Sbjct: 205 LNKGIQITLKDEREEEVRED--SYHYEGGIKSYIDLLNENKEPLHDEPIYIHQSKDDIEV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LS
Sbjct: 263 EIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLS 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I
Sbjct: 322 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRII 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 382 VEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 442 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 501 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K + +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F L
Sbjct: 561 LDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEML 620
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 621 MGDVVENRRQFIEDNAVYANLD 642
>gi|404418103|ref|ZP_10999881.1| DNA gyrase subunit B [Staphylococcus arlettae CVD059]
gi|403489506|gb|EJY95073.1| DNA gyrase subunit B [Staphylococcus arlettae CVD059]
Length = 645
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 247/504 (49%), Positives = 334/504 (66%), Gaps = 7/504 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+HQ Y RG P V+ D GT IRF D +FT +++ T+ RIRELAF
Sbjct: 145 HHQAYKRGIP--QFDLKVIGETDGDTTGTAIRFKADPTIFTETTAYNYETLEQRIRELAF 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNE--YFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN ++I LR E E Y E YF+ GG++ YV+ LN +K+PLH+ + + D I
Sbjct: 203 LNKGISITLRDERETLEDGSYREDSYFYEGGIKSYVEMLNENKEPLHEEPIYVHESKDEI 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ S ++ +L YAN+I T +GGTH +G K +L+R LNS G KSK +K+
Sbjct: 263 EVEIALQYNS-GFATNLLTYANNIHTYEGGTHEDGFKRALSRVLNSYGIKSKIIKEDKDR 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSGE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ E +L +P+V
Sbjct: 322 LSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDKLFAELFERFLYENPNVAR 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PE+SEIFIVEGDSAG
Sbjct: 382 VIVEKGIMASRARIAAKKAREVTRRKSALEVSSLPGKLADCSSKDPEKSEIFIVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GS K GRD QAILPLRGKILNVE+ + N EI++++ A G G+ GE F R
Sbjct: 442 GSTKSGRDSETQAILPLRGKILNVEKARLDRILNNNEIRSMVTAFGTGIGGE-FDLSKAR 500
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHKII++TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPL+K+ +GKQ Y +++
Sbjct: 501 YHKIIVMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLFKLTQGKQKYYVFNE 560
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL K+K+ +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA A+ F
Sbjct: 561 RELDKLKAELEPTPKWSIARYKGLGEMNADQLWETTMNPENRSMLQVTLEDAISADQTFE 620
Query: 480 SLMGARVDTRKELIQNAANLVNLD 503
LMG V+ R++ I++ A LD
Sbjct: 621 MLMGDVVENRRQFIEDNAVYATLD 644
>gi|257866280|ref|ZP_05645933.1| DNA gyrase B subunit [Enterococcus casseliflavus EC30]
gi|257873204|ref|ZP_05652857.1| DNA gyrase B subunit [Enterococcus casseliflavus EC10]
gi|257800238|gb|EEV29266.1| DNA gyrase B subunit [Enterococcus casseliflavus EC30]
gi|257807368|gb|EEV36190.1| DNA gyrase B subunit [Enterococcus casseliflavus EC10]
Length = 649
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 246/507 (48%), Positives = 340/507 (67%), Gaps = 14/507 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L +D DR GT + F PD ++FT F+ + +A R+RELAF
Sbjct: 150 YYQEYHRGAVVDDLKV----IDETDRHGTTVHFVPDPEIFTETTVFNFDKLATRVRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I++ ED EK EY + GG++ YV+ LN K + D + + GIT+
Sbjct: 206 LNRGLKISI--EDKREEKPVLKEYHYDGGIKSYVEHLNASKTVIFPDPIYLEGEQQGITV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ +D+Y +L +AN+I T +GGTH G K +LTR +N +KSK +K+ D +L+
Sbjct: 264 EVSMQY-TDSYHSNLLSFANNIHTYEGGTHEFGFKTALTRVINDYARKSKLMKENDENLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +IS++ P+P+FEGQTKT+LGN EVR V D+ E+ T++L +P+V +
Sbjct: 323 GEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEHFTKFLMENPNVGRQV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A KA AAKRAR++ R+K L S+LPGKLADCSS PE+ E+FIVEGDSAGGS
Sbjct: 383 VEKGLLASKARQAAKRAREMTRRKGALEISNLPGKLADCSSNDPEKCELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RYH
Sbjct: 443 AKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD--- 418
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PPLY V++GK + Y
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQPPLYGVKQGKNIHYIQPGKN 561
Query: 419 -DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ +LK S P+ ++QR+KGLGEM QLWETT++PE RM+ ++ ++DA EA+ +
Sbjct: 562 AEQDLKNTIESLPATPKPTVQRYKGLGEMDDHQLWETTMDPENRMMLRVSVDDAIEADQI 621
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
F LMG RV+ R+ I+ A+ V NLD
Sbjct: 622 FEMLMGDRVEPRRAFIEENAHYVKNLD 648
>gi|325567637|ref|ZP_08144304.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
casseliflavus ATCC 12755]
gi|420261794|ref|ZP_14764438.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus sp. C1]
gi|325159070|gb|EGC71216.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
casseliflavus ATCC 12755]
gi|394771728|gb|EJF51489.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus sp. C1]
Length = 649
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/507 (48%), Positives = 341/507 (67%), Gaps = 14/507 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L +D DR GT + F PD ++FT +F+ + +A R+RELAF
Sbjct: 150 YYQEYHRGAVVDDLKV----IDETDRHGTTVHFVPDPEIFTETTEFNFDKLATRVRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I++ ED EK EY + GG++ YV+ LN K + D + + GIT+
Sbjct: 206 LNRGLKISI--EDKREEKPVLKEYHYDGGIKSYVEHLNASKTVIFPDPIYLEGEQQGITV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ +D+Y +L +AN+I T +GGTH G K +LTR +N +KSK +K+ D +L+
Sbjct: 264 EVSMQY-TDSYHSNLLSFANNIHTYEGGTHEFGFKTALTRVINDYARKSKLMKENDENLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +IS++ P+P+FEGQTKT+LGN EVR V D+ E+ T++L +P+V +
Sbjct: 323 GEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEHFTKFLMENPNVGRQV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A KA AAKRAR++ R+K L S+LPGKLADCSS PE+ E+FIVEGDSAGGS
Sbjct: 383 VEKGLLASKARQAAKRAREMTRRKGALEISNLPGKLADCSSNDPEKCELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RYH
Sbjct: 443 AKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD--- 418
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PPLY V++GK + Y
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQPPLYGVKQGKNIHYIQPGKN 561
Query: 419 -DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ +LK S P+ ++QR+KGLGEM QLWETT++P+ RM+ ++ ++DA EA+ +
Sbjct: 562 AEQDLKNTIESLPATPKPTVQRYKGLGEMDDHQLWETTMDPDNRMMLRVSVDDAIEADQI 621
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
F LMG RV+ R+ I+ A+ V NLD
Sbjct: 622 FEMLMGDRVEPRRAFIEENAHYVKNLD 648
>gi|423484484|ref|ZP_17461173.1| DNA gyrase subunit B [Bacillus cereus BAG6X1-2]
gi|401137945|gb|EJQ45520.1| DNA gyrase subunit B [Bacillus cereus BAG6X1-2]
Length = 642
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 251/505 (49%), Positives = 348/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + DR GT RF PD+++FT +++ +T+A R+RELAF
Sbjct: 148 HYQKYERGIPVADLKV----IGETDRTGTITRFKPDEEIFTETTEYEFDTLATRMRELAF 203
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 204 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 259 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 318 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 378 KIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 438 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 497 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNN 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 557 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 616
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 617 ILMGDKVEPRRNFIQENAKYVKNLD 641
>gi|392406420|ref|YP_006443028.1| DNA gyrase subunit B [Anaerobaculum mobile DSM 13181]
gi|390619556|gb|AFM20703.1| DNA gyrase, B subunit [Anaerobaculum mobile DSM 13181]
Length = 645
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 247/505 (48%), Positives = 349/505 (69%), Gaps = 14/505 (2%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
+E+HQ+YSRG P + L V +R GT++ F PD +F F + ++ R+RE+
Sbjct: 152 IEWHQRYSRGVPQSELKA----VGKAERTGTKVHFMPDDAIFEER-DFSFDVLSARLREI 206
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGI 119
AFL P +TI L+ D + N+ + + GG+ +V++LN DK L + + + DG+
Sbjct: 207 AFLVPGITIELK----DLKSNKSMTFRYEGGVVSFVKYLNRDKIALFAEPIYISGEKDGV 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ +D++ + + +AN I T++GGTH+ G + +LTR +N + ++ K +KDKD +
Sbjct: 263 LVEVALQY-NDSFQERVFAFANLIHTVEGGTHVIGFRTALTRAINEMARRQKLLKDKDPN 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSG+ ++EGLT IISV++ P+FEGQTKTRLGN +VR +VD V + L LE PD L
Sbjct: 322 LSGDDLKEGLTAIISVKLKEPQFEGQTKTRLGNSDVRGIVDSIVYDELMATLEEKPDYLR 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K++ A +A AAK+AR+LVR+KS LPGKLADCSS PEE EI+IVEGDSAG
Sbjct: 382 PIVEKAIKARQARDAAKKARELVRRKSAFGGLDLPGKLADCSSKDPEECEIYIVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGR+R FQAILPLRGKILNVE+ + N EI+ +I+ALG G+ GEDF LR
Sbjct: 442 GSAKQGRNRTFQAILPLRGKILNVEKARLDKVLSNAEIRTIIQALGCGI-GEDFDISKLR 500
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YH++II+TDADVDGAHIRTLLL FFYR+ + +EG +Y+ PPLY+V+ GK+ YCY D
Sbjct: 501 YHRVIIMTDADVDGAHIRTLLLAFFYRFMPRIIEEGHLYIAQPPLYRVQVGKKEYYCYSD 560
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+ + S+ ++QR+KGLGEM P QLW+TT++P +R+LK++ IEDA A+ F+
Sbjct: 561 KELRNLMERL-SDKKATVQRYKGLGEMNPEQLWKTTMDPNERILKRVDIEDALAADEYFT 619
Query: 480 SLMGARVDTRKELIQNAANLV-NLD 503
LMG +V+ R+E I+ AN V NLD
Sbjct: 620 ILMGDKVEPRREFIEAHANEVRNLD 644
>gi|357051619|ref|ZP_09112793.1| DNA gyrase subunit B [Enterococcus saccharolyticus 30_1]
gi|355379543|gb|EHG26700.1| DNA gyrase subunit B [Enterococcus saccharolyticus 30_1]
Length = 649
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 246/507 (48%), Positives = 339/507 (66%), Gaps = 14/507 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L +D DR GT + F PD ++FT F+ + +A R+RELAF
Sbjct: 150 YYQEYHRGAVVEDLKV----IDETDRHGTTVHFVPDPEIFTETTVFNFDKLATRVRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I++ ED E EY + GG++ YV+ LN K + + + + GIT+
Sbjct: 206 LNRGLKISI--EDKREEHPVLKEYHYDGGIKSYVEHLNASKTVIFPEPIYLEGEQQGITV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+++LQ+ +D+Y + +L +AN+I T +GGTH G K +LTR +N +KSK +K+ D +L+
Sbjct: 264 EVSLQY-TDSYHNNLLSFANNIHTYEGGTHESGFKTALTRVINDYARKSKLMKENDENLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +IS++ P+P+FEGQTKT+LGN EVR V D+ E+ T++L +P V +
Sbjct: 323 GEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEHFTKFLMENPAVGRQV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A KA AAKRAR++ R+K L S+LPGKLADCSS PE+ E+FIVEGDSAGGS
Sbjct: 383 VEKGLLASKARQAAKRAREMTRRKGALEISNLPGKLADCSSNDPEKCELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RYH
Sbjct: 443 AKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD--- 418
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PPLY V++GK + Y
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQPPLYGVKQGKNIHYIQPGKN 561
Query: 419 -DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ +LK S P+ S+QR+KGLGEM QLWETT++PE RM+ ++ ++DA EA+ +
Sbjct: 562 AEQDLKNTIESLPATPKPSVQRYKGLGEMDDHQLWETTMDPENRMMLRVSVDDAIEADQI 621
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
F LMG RV+ R+ I+ A+ V NLD
Sbjct: 622 FEMLMGDRVEPRRAFIEENAHYVKNLD 648
>gi|418629092|ref|ZP_13191607.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU127]
gi|374834825|gb|EHR98460.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU127]
Length = 643
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 249/502 (49%), Positives = 335/502 (66%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + D+ GT IRF DK++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L+ E + + Y + GG++ YV LN +K+PLHD + + D I +
Sbjct: 205 LNKGIQITLKDEREEEVRED--SYHYEGGIKSYVDLLNENKEPLHDEPIYIHQSKDDIEV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LS
Sbjct: 263 EIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLS 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I
Sbjct: 322 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRII 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 382 VEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 442 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GK+ Y ++D E
Sbjct: 501 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKRKYYVFNDRE 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K + +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F L
Sbjct: 561 LDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEML 620
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 621 MGDVVENRRQFIEDNAVYANLD 642
>gi|169351628|ref|ZP_02868566.1| hypothetical protein CLOSPI_02409 [Clostridium spiroforme DSM 1552]
gi|169291850|gb|EDS73983.1| DNA gyrase, B subunit [Clostridium spiroforme DSM 1552]
Length = 641
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 245/504 (48%), Positives = 344/504 (68%), Gaps = 11/504 (2%)
Query: 3 YHQKYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
Y+Q++ G +PV L V D GT + F DK +F +D++T+ RIRELA
Sbjct: 145 YYQRFENGGQPVDKLKV----VGDSDITGTIVTFKADKLIFKEGTVYDYDTLNQRIRELA 200
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVD-GIT 120
FLN L ++L ED N+ Y + GG++EYV ++N +K P+H+ + + +D+ IT
Sbjct: 201 FLNKGLRLSL--EDQRNGINRKQVYHYEGGIKEYVSFINKNKTPIHEEIIYVEDIQQDIT 258
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
I++A+Q+ +D Y + + N+I T +GGTH EG + +LTR +N+ K +K D +L
Sbjct: 259 IEVAMQY-NDGYQSNIYSFCNNINTHEGGTHEEGFRMALTRVINNYAKNKGLLKKDDETL 317
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ VREGLT IISV+ P+P++EGQTKT+LGN EVRK+ + L ++L +PD
Sbjct: 318 SGDDVREGLTAIISVKHPDPQYEGQTKTKLGNAEVRKIASNIIATSLDKFLLENPDTAKI 377
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K++ A +A +AAK+AR++ R+K+ L S+LPGKLADCSS P E EIFIVEGDSAGG
Sbjct: 378 IVDKAIIASRARMAAKKAREMTRRKNPLEVSNLPGKLADCSSKDPSECEIFIVEGDSAGG 437
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GRDRR QAILPLRGKILNVE+ + N EI+++I A G G+ GE+F + LRY
Sbjct: 438 SAKMGRDRRIQAILPLRGKILNVEKSRLEKILGNAEIRSMITAFGTGI-GEEFNLDKLRY 496
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKI+I+TDADVDG HIR L+LTF YRY K L + G +Y PPLY ++ GK+ YCY D
Sbjct: 497 HKIVIMTDADVDGGHIRILMLTFLYRYLKPLIENGFVYAAQPPLYLLKHGKEEHYCYSDE 556
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+ +K+ S A YSIQR+KGLGEM QLWETT++P++R+L Q+ +++A EA+++F
Sbjct: 557 ELEDLKTKIGSGAKYSIQRYKGLGEMNADQLWETTMDPQKRILNQIDLDEAMEADMIFDM 616
Query: 481 LMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+E IQ NA + +LD
Sbjct: 617 LMGEKVEPRREFIQENAKYVTDLD 640
>gi|392988234|ref|YP_006486827.1| DNA gyrase subunit B [Enterococcus hirae ATCC 9790]
gi|392335654|gb|AFM69936.1| DNA gyrase subunit B [Enterococcus hirae ATCC 9790]
Length = 648
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 245/507 (48%), Positives = 341/507 (67%), Gaps = 14/507 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L ++ DR GT + F PD ++FT FD N +A RIRELAF
Sbjct: 149 YYQEYRRGAVVDDLKI----IEQTDRNGTTVHFIPDPEIFTETTVFDFNKLATRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I++ ED E EY + GG++ YV++LN +K + + V + IT+
Sbjct: 205 LNRGMKISI--EDKREESPVVKEYHYDGGIKSYVEYLNANKTVIFPEPVYLEGEQQDITV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ +D Y ++ +AN+I T +GGTH G K +LTR +N +K K +K+ D +L+
Sbjct: 263 EVSMQY-TDGYHSNIMSFANNIHTYEGGTHESGFKTALTRVINDYARKQKLMKENDDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +IS++ P+P+FEGQTKT+LGN EVR V D+ E+ ++L +P V I
Sbjct: 322 GEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEHFMKFLLENPSVGRQI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A KA LAAKRAR++ R+K L S+LPGKLADCSS PE+ E+FIVEGDSAGGS
Sbjct: 382 IEKGLLASKARLAAKRAREVTRRKGALEISNLPGKLADCSSNDPEKCELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILP+RGKILNVE+ + NEEI++L A+G G GEDF RYH
Sbjct: 442 AKQGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GEDFDVSKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD--- 418
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PPLY V++GK++ Y
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQPPLYGVKQGKKITYVQPGKN 560
Query: 419 -DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ +LK+V +S P+ S+QR+KGLGEM QLWETT++P RM+ ++ ++DA A+ +
Sbjct: 561 AEEDLKQVVASLPATPKPSVQRYKGLGEMDDHQLWETTMDPSNRMMARVSVDDAIAADQI 620
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
F LMG RV+ R+ I+ A+ V NLD
Sbjct: 621 FEMLMGDRVEPRRAFIEENAHYVKNLD 647
>gi|157690804|ref|YP_001485266.1| DNA gyrase subunit B [Bacillus pumilus SAFR-032]
gi|157679562|gb|ABV60706.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bacillus pumilus
SAFR-032]
Length = 642
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 251/503 (49%), Positives = 344/503 (68%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q++ RG PV L + D GT F PD ++FT I+FD++T+A R+RELAF
Sbjct: 147 HYQQFKRGVPVGDLEI----IGETDVTGTTTHFVPDPEIFTETIEFDYDTLANRVRELAF 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED K + NEY + GG++ YV+ LN K+ +H+ V + DGIT+
Sbjct: 203 LTKGVNIII--EDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEEPVYIEGERDGITV 260
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + +AN+I T +GGTH G K LTR +N +K+ KD D +LS
Sbjct: 261 EVALQY-NDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKNGVFKDGDSNLS 319
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IIS++ P+P+FEGQTKT+LGN E R + D E L ++L +PD I
Sbjct: 320 GEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEKFLLENPDAAKKI 379
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 380 VEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELYIVEGDSAGGS 439
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 440 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 498
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D +
Sbjct: 499 KVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRVEYVYNDKQ 558
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ S +QR+KGLGEM QLWETT++P+ R L Q+ +EDA +A+ F L
Sbjct: 559 LDELLKSLSQTPKPGLQRYKGLGEMNAAQLWETTMDPDARTLLQVTLEDAIDADETFEML 618
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V+ R+ I +NA + NLD
Sbjct: 619 MGDKVEPRRNFIEENAQYVKNLD 641
>gi|433461798|ref|ZP_20419400.1| DNA gyrase subunit B [Halobacillus sp. BAB-2008]
gi|432189693|gb|ELK46776.1| DNA gyrase subunit B [Halobacillus sp. BAB-2008]
Length = 640
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 246/504 (48%), Positives = 334/504 (66%), Gaps = 14/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q Y RG P L + D GTRI F PD+++F+ ++ +A R+RELAF
Sbjct: 147 YYQAYHRGVPADDLKV----IGETDITGTRITFKPDEEIFSETQEYKFEILANRLRELAF 202
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
LN LTI + ++ D DP +Y F GG+ YV+ +N ++ LHD + D I+
Sbjct: 203 LNKGLTITIDDKRTDEDPV-----QYHFEGGILSYVEHMNRTREVLHDAFFIEGEQDEIS 257
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
I++A+Q+ +D ++ + YAN+I T +GGTH G K LTR +N +K+ K+ D +L
Sbjct: 258 IEIAMQY-NDGFASNIYSYANNIHTYEGGTHESGFKTGLTRVINDYARKNNMFKETDPNL 316
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
+G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R V D E + +L +P + +
Sbjct: 317 TGDDVREGLTAIISLKHPDPQFEGQTKTKLGNSEARTVTDALFSENFSRFLFENPQMAKT 376
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS + SE++IVEGDSAGG
Sbjct: 377 IVEKGLMASRARMAAKKARELTRRKSALEVSNLPGKLADCSSKDAKISELYIVEGDSAGG 436
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILPLRGKI+NVE+ + N EI+ +I ALG G+ GEDF E RY
Sbjct: 437 SAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEIRTIITALGTGI-GEDFDIEKARY 495
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKI+I+TDADVDGAHIRTLLLTFFYRY + L ++G IY+ PPLYK+++GK Y Y D
Sbjct: 496 HKIVIMTDADVDGAHIRTLLLTFFYRYMRPLIEKGYIYIAQPPLYKIQQGKATYYTYSDK 555
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L + + ++ IQR+KGLGEM P QLWETT++PE R + Q+ +EDA A+ F
Sbjct: 556 GLDSMLAQLSASPKPGIQRYKGLGEMNPEQLWETTMDPETRSMLQVNLEDAMGADETFDI 615
Query: 481 LMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 616 LMGDKVEPRRNFIQENAQYVQNLD 639
>gi|229083320|ref|ZP_04215682.1| DNA gyrase subunit B [Bacillus cereus Rock3-44]
gi|228699995|gb|EEL52618.1| DNA gyrase subunit B [Bacillus cereus Rock3-44]
Length = 640
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 251/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D GT RF PD ++F ++D +T+A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKV----IGDTDHTGTITRFKPDPEIFKETTEYDFDTLATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E+ Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRENK-----QKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVSLQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEYGYIYIAQPPLFKVQQGKKIQYAYND 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ S P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELEKILSELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>gi|410458121|ref|ZP_11311884.1| DNA gyrase subunit B [Bacillus azotoformans LMG 9581]
gi|409931749|gb|EKN68725.1| DNA gyrase subunit B [Bacillus azotoformans LMG 9581]
Length = 641
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 255/504 (50%), Positives = 342/504 (67%), Gaps = 13/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++ K+ RG V L + D+ GT + F PD ++F ++++ +A R+RELAF
Sbjct: 147 HYIKFERGAVVEELKV----IGETDKTGTIVHFSPDPEIFQETTVYEYDVLATRLRELAF 202
Query: 63 LNPKLTIALRKEDSDPE-KNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
LN L + + ED PE K Q+ + + GG+ YV+ LN ++ +H+ V + DGIT
Sbjct: 203 LNRGLNLII--EDKRPEGKTQH--WCYEGGIISYVEHLNRSREVIHEEPVYVMGEKDGIT 258
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
++ALQ+ +D+Y + +AN+I T +GGTH G K +LTR +N +KS K+ D +L
Sbjct: 259 AEVALQY-NDSYVSNIYSFANNIHTYEGGTHEVGFKTALTRVINDYARKSGMFKENDPNL 317
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
+G+ VREGLT IISV+ P+P+FEGQTKT+LGN EVR +VD E L ++L +P V
Sbjct: 318 TGDDVREGLTTIISVKHPDPQFEGQTKTKLGNSEVRAIVDSVFSEQLDKFLMENPSVGKK 377
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K L A +A +AAK+AR+L R+K L SSLPGKLADCSS SE++IVEGDSAGG
Sbjct: 378 IVEKGLMASRARIAAKKARELTRRKGALEISSLPGKLADCSSKDASISELYIVEGDSAGG 437
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GRDR FQAILPLRGKILNVE+ + N EI+ +I ALG G+ GEDF RY
Sbjct: 438 SAKSGRDRHFQAILPLRGKILNVEKARLDRILSNNEIRTIITALGTGI-GEDFDISKARY 496
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKI+I+TDADVDGAHIRTLLLTFFYR+ K + + G IY+ PPLYKV++GK+V Y Y+D
Sbjct: 497 HKIVIMTDADVDGAHIRTLLLTFFYRFMKPIIENGYIYIAQPPLYKVQQGKKVIYAYNDR 556
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+ V + P N S+QR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ VF
Sbjct: 557 ELEAVLAELPDNPKPSLQRYKGLGEMNPEQLWETTMDPEVRTLLQVQLQDAMEADEVFEI 616
Query: 481 LMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+E IQ NA + NLD
Sbjct: 617 LMGDQVEPRREFIQENARYVKNLD 640
>gi|212637854|ref|YP_002314374.1| DNA gyrase subunit B [Anoxybacillus flavithermus WK1]
gi|212559334|gb|ACJ32389.1| DNA gyrase subunit B [Anoxybacillus flavithermus WK1]
Length = 640
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 253/503 (50%), Positives = 346/503 (68%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P + L V DR GT I F PD ++FT ++D++T+A R+RELAF
Sbjct: 146 HYQKYKRGVPCSDLQV----VGETDRTGTTIHFKPDPEIFTETTEYDYDTLAHRLRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L ED E N+ NEY++ GG+ YV+ LN K+ LH+ + + DGI +
Sbjct: 202 LNKGIRITL--EDRRGE-NRRNEYYYEGGISSYVKHLNRTKETLHEEPIYIEGEKDGIQV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D Y+ + +AN+I T +GGTH G K +LTR +N G+K+ KD+D +L+
Sbjct: 259 EIALQY-NDGYTSNIYSFANNIHTHEGGTHELGFKTALTRIINDYGRKNNMFKDQDANLT 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IISV+ P P+FEGQTKT+LGN + R + E ++L +P V I
Sbjct: 318 GEDVREGLTAIISVKHPAPQFEGQTKTKLGNSDARTATESIFAEQFEKFLLENPSVAKKI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A LAAKRAR+L R+K+ L SSLPGKLADCSS P E+++VEGDSAGGS
Sbjct: 378 VEKGILASRARLAAKRARELTRRKNALEVSSLPGKLADCSSRDPAICELYVVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKI+NVE+ + N E++ +I ALG G+ GEDF RYH
Sbjct: 438 AKQGRDRHFQAILPLRGKIINVEKSRLDKILSNNEVRAIITALGTGI-GEDFDITKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYRY + + ++G +Y+ PPLYK+++GK+++Y Y D +
Sbjct: 497 KIIIMTDADVDGAHIRTLLLTFFYRYMREVIEQGYVYIAQPPLYKIQQGKRIEYAYSDRQ 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ + P IQR+KGLGEM P QLWETT+NPE R L ++ ++DA EA+ F L
Sbjct: 557 LEEILTRLPEQPKPVIQRYKGLGEMNPEQLWETTMNPETRTLLKVSLQDAMEADETFEIL 616
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V+ R++ I +NA + NLD
Sbjct: 617 MGDKVEPRRQFIEENAKYVKNLD 639
>gi|89101114|ref|ZP_01173950.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911]
gi|89084169|gb|EAR63334.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911]
Length = 640
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 251/503 (49%), Positives = 346/503 (68%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QK+ RG P L + + GT I F PD ++FT +++++ +A RIRELAF
Sbjct: 146 HYQKFERGVPAADLKV----IGEAEETGTTIHFKPDGEIFTETLEYEYEILANRIRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN L I + ED E N+ +EYF+ GG++ YV+ LN K+ LH+ + + +GIT+
Sbjct: 202 LNRGLKITI--EDKRAE-NKKSEYFYEGGIKSYVEHLNRTKEVLHEEPIYIEGEKEGITV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D ++ + YAN+I T +GGTH G K +LTR +N +K+ KD D +LS
Sbjct: 259 EVAIQY-NDGFTGNIYSYANNIHTYEGGTHESGFKTALTRVINDYARKNGIFKDSDANLS 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT I+S++ P+P+FEGQTKT+LGN EVR V D ++ ++L +P V +
Sbjct: 318 GEDVREGLTAIVSIKHPDPQFEGQTKTKLGNSEVRTVTDTFFSDHFEKFLMENPQVARKV 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A LAAK+AR+L R+KS L SSLPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 378 VEKGLMAARARLAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELYIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++ +I A G G+ G+DF+ RYH
Sbjct: 438 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITAAGTGI-GDDFEISKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPLYKV++GK+V+Y Y+D +
Sbjct: 497 KIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEAGYIYIAQPPLYKVQQGKRVEYAYNDKQ 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ P +IQR+KGLGEM P QLWETT++P R L Q+ +EDA EA+ F L
Sbjct: 557 LDQIFEELPKAPKPNIQRYKGLGEMNPEQLWETTMDPGTRTLLQVSLEDAIEADETFEIL 616
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R++ I+ NA + NLD
Sbjct: 617 MGDKVEPRRQFIEDNAVYVKNLD 639
>gi|420202666|ref|ZP_14708256.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM018]
gi|394269207|gb|EJE13745.1| DNA gyrase, B subunit [Staphylococcus epidermidis NIHLM018]
Length = 643
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 249/502 (49%), Positives = 334/502 (66%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + D+ GT IRF DK++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L+ E + + Y + GG++ YV LN +K+PLH+ + + D I +
Sbjct: 205 LNKGIQITLKDEREEEVRED--SYHYEGGIKSYVDLLNENKEPLHEEPIYIHQSKDDIEV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S Y +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LS
Sbjct: 263 EIALQYNS-GYGTNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLS 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I
Sbjct: 322 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRII 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 382 VEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 442 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 501 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K + +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F L
Sbjct: 561 LDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEML 620
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 621 MGDVVENRRQFIEDNAVYANLD 642
>gi|30680397|ref|NP_850762.1| DNA gyrase subunit B [Arabidopsis thaliana]
gi|332003318|gb|AED90701.1| DNA gyrase subunit B [Arabidopsis thaliana]
Length = 519
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 239/291 (82%), Positives = 272/291 (93%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
ME+ Q YSRGKP+TTLTC VLP++SK +GT IRFWPDK+VFTTAI+FDHNTIAGRIREL
Sbjct: 226 MEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIREL 285
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
AFLNPK+TI+L+KED DPEK QY+EY FAGGL EYV WLNTDK P+HDV+GFR++++G T
Sbjct: 286 AFLNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLGFRREINGAT 345
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+D+ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN+L KKSKTVK+KDISL
Sbjct: 346 VDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISL 405
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGEHVREGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTE+LELHPD+L+S
Sbjct: 406 SGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILES 465
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIF 291
I+SKSL+A KAALAAKRAR+LVR KSVL+SSSLPGKLADCSST PE S ++
Sbjct: 466 IISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSGMY 516
>gi|379718020|ref|YP_005310151.1| protein GyrB [Paenibacillus mucilaginosus 3016]
gi|378566692|gb|AFC27002.1| GyrB [Paenibacillus mucilaginosus 3016]
Length = 637
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/503 (49%), Positives = 345/503 (68%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++S G P L + + GT+ FWPD+++F ++D +T+ RIRELAF
Sbjct: 144 HQQEFSCGVPQYDLKI----IGETEETGTQATFWPDEEIFKETTEYDFDTLQSRIRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITI 121
LN + I L E SD N + + GG+ +V+ LN +++PLH+ F + D IT+
Sbjct: 200 LNKGIEIVLTDERSDVS----NSFMYEGGIVSFVEHLNRNREPLHEPPIFVEGEKDNITV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D Y++ + +AN+I T +GGTH G K++LTR LN +K T+KD D +LS
Sbjct: 256 EVALQY-NDTYAENIYSFANNINTHEGGTHESGFKSALTRILNEYARKYNTIKDNDANLS 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IISV++P P+FEGQTKT+LGN EVR +V+ + L E+L +P V I
Sbjct: 315 GDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESLFSDKLEEFLVENPSVAKKI 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A AA++AR+L R+KS L SSLPGKLADCSS SE++IVEGDSAGGS
Sbjct: 375 VEKGVQAQRAREAARKARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N EI+ +I ALG G+ G+DF+ RYH
Sbjct: 435 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNAEIRAIITALGTGI-GDDFEITKARYH 493
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLTFF+RY + L + G +Y+ PPLYK+ER K ++Y Y+D +
Sbjct: 494 KVIIMTDADVDGAHIRTLLLTFFFRYMRKLIEAGFVYIAQPPLYKLERNKTIRYAYNDKQ 553
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
+ + + F A ++QR+KGLGEM P QLWETT++P+ R L Q+ I+DA +A+VVF +L
Sbjct: 554 REAIMAEFGEGAKVNVQRYKGLGEMNPGQLWETTMDPDSRTLLQVSIQDAIDADVVFDTL 613
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG V+ R++ IQ A V NLD
Sbjct: 614 MGDAVEPRRDFIQLHARYVKNLD 636
>gi|423613637|ref|ZP_17589497.1| DNA gyrase subunit B [Bacillus cereus VD107]
gi|401241702|gb|EJR48089.1| DNA gyrase subunit B [Bacillus cereus VD107]
Length = 642
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 347/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + DR GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 148 HYQKYERGIPVADLKV----IGETDRTGTITRFKPDPEIFQETTEYEFDTLATRMRELAF 203
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 204 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 259 QVEVSLQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 318 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 378 KIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 438 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 497 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEYGYIYIAQPPLFKVQQGKKIQYAYND 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P++ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 557 RELEKILAELPAHPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 616
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 617 ILMGDKVEPRRNFIQENAKYVKNLD 641
>gi|440782434|ref|ZP_20960451.1| DNA gyrase subunit B [Clostridium pasteurianum DSM 525]
gi|440219958|gb|ELP59167.1| DNA gyrase subunit B [Clostridium pasteurianum DSM 525]
Length = 636
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 242/507 (47%), Positives = 350/507 (69%), Gaps = 20/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG + + + GT+I F PD ++F I+F+++T+A R+RELAF
Sbjct: 143 WRQMYHRGNVASPFE----KIGDTEEHGTKINFKPDPEIFDE-IEFNYDTLAQRLRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I E D ++ + + GG++ +V +LN +K+P+ + G++ +
Sbjct: 198 LNKGIKINFVDERQDKKE----VFHYEGGIKSFVSYLNRNKEPIFPEPIYIEGYKNEY-- 251
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+++ALQ+ +D Y++ + +AN+I T++GGTH+ G K +LTR LN +K +K+ D
Sbjct: 252 -MVEIALQY-NDGYAENLFSFANNIDTVEGGTHLSGFKTALTRVLNDYARKFNFIKENDK 309
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+ SGE +REGLT ++SV++P+P+FEGQTKT+LGN EVR +VD + E ++ +LE +P +
Sbjct: 310 NFSGEDIREGLTAVVSVKLPDPQFEGQTKTKLGNSEVRGIVDSILGENVSAFLEENPQIA 369
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K++ A +A AAK+AR+L R+KSVL +++LPGKLADCSS P E EI+IVEGDSA
Sbjct: 370 KIIIDKAMLASRARDAAKKARELTRRKSVLETTALPGKLADCSSKDPAECEIYIVEGDSA 429
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRRFQAILPLRGKI+NVE++ + +E I+ +I A G G+ +DF E +
Sbjct: 430 GGSAKQGRDRRFQAILPLRGKIMNVEKQRIDKILNSEMIRAMITAFGAGI-SKDFNIEKI 488
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+III+TDADVDGAHIRTLLLTFFYRY + L ++G +Y+ PPLYKV +GK+ YCY
Sbjct: 489 RYHRIIIMTDADVDGAHIRTLLLTFFYRYMRELVEQGHVYIAQPPLYKVSKGKKEIYCYL 548
Query: 419 DAELKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ EL K + SIQR+KGLGEM QLWETT++PE+R+L + +EDA A+ +
Sbjct: 549 EEELDKALEELGGKDNNTSIQRYKGLGEMNAEQLWETTMDPERRILLKATVEDAMAADEI 608
Query: 478 FSSLMGARVDTRKELI-QNAANLVNLD 503
F+ LMG +V+ R+E I QNA N+VNLD
Sbjct: 609 FTILMGDKVEPRREFIQQNAKNVVNLD 635
>gi|375311491|ref|ZP_09776746.1| DNA gyrase subunit b [Paenibacillus sp. Aloe-11]
gi|375076671|gb|EHS54924.1| DNA gyrase subunit b [Paenibacillus sp. Aloe-11]
Length = 634
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 249/506 (49%), Positives = 347/506 (68%), Gaps = 18/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG P V + D GT+ F+PD+Q+FT +D++T+ RIRELAF
Sbjct: 141 YEQEYHRGVP----QYDVRVIGDTDETGTQTTFYPDEQIFTETTVYDYDTLQTRIRELAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I+L +D + + + GG+ EYVQ+LN ++ LH+ V G R D
Sbjct: 197 LNKGIAISL----TDERTGASDTFHYEGGISEYVQFLNQQREALHEQPIYVEGSR---DM 249
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++ALQ+ +D+Y++ + +AN+I T +GGTH G K++LTR +N +K+ +KD +
Sbjct: 250 IQVEVALQY-NDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYARKNGLIKDSNA 308
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+G+ VREGLT IISV++P P+FEGQTKT+LGN EVR +V+ E L E+LE +P V
Sbjct: 309 NLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESLFAEKLQEFLEENPSVS 368
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
++ KSL A +A AA++AR+L R+KS L SSLPGKLADCSS SE++IVEGDSA
Sbjct: 369 RRVVDKSLQAARAREAARKARELTRRKSALEISSLPGKLADCSSKDASISELYIVEGDSA 428
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILP+RGKILNVE+ + ++EI++++ A+G G+ G+DF
Sbjct: 429 GGSAKQGRDRHFQAILPIRGKILNVEKARLDRILSSDEIRSMVTAMGTGI-GDDFDISKA 487
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHK+II+TDADVDGAHIRTLLLTFFYRY + + D G +Y+ PPL+KVER K ++Y
Sbjct: 488 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRKILDAGYVYIAQPPLFKVERNKVIRYANS 547
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+AE ++ F NA Y++QR+KGLGEM QLWETT++PE R + Q+ I DA A+ +F
Sbjct: 548 EAERDEIIREFGENAKYNVQRYKGLGEMNAAQLWETTMDPESRTMLQVTINDAMLADTLF 607
Query: 479 SSLMGARVDTRKELIQNAANLV-NLD 503
++LMG V+ R++ IQ A V NLD
Sbjct: 608 NTLMGDNVEPRRDFIQEHAKYVKNLD 633
>gi|300862234|ref|ZP_07108314.1| DNA gyrase, B subunit [Enterococcus faecalis TUSoD Ef11]
gi|428765686|ref|YP_007151797.1| DNA gyrase subunit B [Enterococcus faecalis str. Symbioflor 1]
gi|300848759|gb|EFK76516.1| DNA gyrase, B subunit [Enterococcus faecalis TUSoD Ef11]
gi|427183859|emb|CCO71083.1| DNA gyrase subunit B [Enterococcus faecalis str. Symbioflor 1]
Length = 649
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 244/507 (48%), Positives = 340/507 (67%), Gaps = 14/507 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L ++ DR GT + F PD ++FT +D + +A R+RELAF
Sbjct: 150 YYQEYRRGAVVDDLKV----IEETDRHGTTVHFIPDPEIFTETTVYDFDKLATRVRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I++ ED + EY + GG++ YV+ LN +K + + V + IT+
Sbjct: 206 LNRGLHISI--EDRREGQEDKKEYHYEGGIKSYVEHLNANKDVIFPEPVFIEGEQQDITV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ +D Y +L +AN+I T +GGTH G K SLTR +N +K K +K+ D L+
Sbjct: 264 EVSMQY-TDGYHSNILSFANNIHTYEGGTHESGFKTSLTRVINDYARKQKLMKENDEKLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT ++S++ P+P+FEGQTKT+LGN EVR V D+ EY T++L +P V I
Sbjct: 323 GEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEYFTKFLMENPTVGKQI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA LAAKRAR++ R+K L S+LPGKLADCSS PE+ E+FIVEGDSAGGS
Sbjct: 383 VEKGMLASKARLAAKRAREVTRRKGALEISNLPGKLADCSSKDPEKCELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R FQAILP+RGKILNVE+ + NEEI++L A+G G GEDF RYH
Sbjct: 443 AKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GEDFDVSKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC----Y 417
K++I+TDADVDGAHIRTLLLT FYR+ + + + G +Y+ PPLY V++GK + Y +
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYVYIAQPPLYGVKQGKNITYVQPGKH 561
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ EL KV P++ S+QR+KGLGEM QLWETT++PE+R++ ++ ++DA EA+ +
Sbjct: 562 AEEELAKVLEELPASPKPSVQRYKGLGEMDDHQLWETTMDPEKRLMARVSVDDAIEADQI 621
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
F LMG RV+ R+ I+ A+ V NLD
Sbjct: 622 FEMLMGDRVEPRRAFIEENAHYVKNLD 648
>gi|210624032|ref|ZP_03294149.1| hypothetical protein CLOHIR_02101 [Clostridium hiranonis DSM 13275]
gi|210153239|gb|EEA84245.1| hypothetical protein CLOHIR_02101 [Clostridium hiranonis DSM 13275]
Length = 633
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 260/503 (51%), Positives = 346/503 (68%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +G P T L V D GT I F PD +VF I+F +T+ R+REL+F
Sbjct: 140 YRQEYKKGNPQTKLEV----VGESDHTGTIISFMPDAEVFD-EIEFSFDTLEYRLRELSF 194
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I ED K +Y ++ + GGL EYV++LN + +H D+V K VD +
Sbjct: 195 LNKGIKIIF--EDKREGKEKYRDFHYTGGLVEYVKFLNKSRTGIHEDIVYIDKKVDDCLV 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y++ + +AN+I T +GG+H+ G KA+LT+T+N K++ +KDKD +LS
Sbjct: 253 EIAMQY-TDGYTENIYSFANNINTHEGGSHLAGFKAALTKTINEYAKRNGALKDKDSNLS 311
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT ++SV++P+P+FEGQTKT+LGN +R +VD E L +LE +P+ I
Sbjct: 312 GEDIREGLTAVVSVKLPDPQFEGQTKTKLGNTFMRGIVDGVTVEELGSFLEENPNTAKVI 371
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AAKRAR+L R+KSVL S+SLPGKLADCS P +SEIF+VEGDSAGGS
Sbjct: 372 VDKALRAQRAREAAKRARELTRRKSVLESTSLPGKLADCSEKDPSKSEIFLVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR QAILPLRGKILNVE+ + ++EI+N+I A G G+ G DF E RYH
Sbjct: 432 AKQGRDRNTQAILPLRGKILNVEKSRLDKILASDEIKNMITAYGCGI-GNDFDLEKARYH 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFF+RY + L +EG +Y PPLYKV + K+ Y Y D E
Sbjct: 491 KIIIMTDADVDGAHIRTLLLTFFFRYMRPLIEEGYVYAAQPPLYKVTKQKKEYYVYSDKE 550
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + + + Y IQR+KGLGEM P QLW+TT+NPE R L Q+ IEDAA A+ +FS L
Sbjct: 551 LDDLLNEIGRDK-YDIQRYKGLGEMNPEQLWDTTMNPETRTLLQVTIEDAAIADEIFSML 609
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V R+E IQ NA + NLD
Sbjct: 610 MGDKVAPRREFIQENAKYVRNLD 632
>gi|294849833|ref|ZP_06790573.1| hypothetical protein SKAG_01922 [Staphylococcus aureus A9754]
gi|294823381|gb|EFG39810.1| hypothetical protein SKAG_01922 [Staphylococcus aureus A9754]
Length = 644
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 254/502 (50%), Positives = 340/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L VD+ D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVDTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|116754690|ref|YP_843808.1| DNA gyrase, B subunit [Methanosaeta thermophila PT]
gi|116666141|gb|ABK15168.1| DNA gyrase subunit B [Methanosaeta thermophila PT]
Length = 628
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 244/503 (48%), Positives = 348/503 (69%), Gaps = 18/503 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG+PV+ L + GT +RF PD ++F F + ++ R+RELAF
Sbjct: 141 YRQRYERGRPVSDLQ----ETGVSENTGTTVRFKPDPEIFEVT-DFSFDVLSSRLRELAF 195
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I++ E S K + + GG+ +VQ+LN K+ LH + + F + D +++
Sbjct: 196 LNRGLKISITDERSGRSKT----FHYDGGIISFVQYLNKSKEVLHPNPIYFSRVRDDVSV 251
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + +Y++++ +AN+I T +GGTH+ G +A+LT+T+N ++ K +K D L+
Sbjct: 252 EVAMQYNT-SYNESVFTFANNINTREGGTHLSGFRAALTKTVNDFVREKKLLKG-DAKLT 309
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGL ++SVR+P+P+FEGQTKTRLGN VR +V+ V E L EY EL+P V ++I
Sbjct: 310 GDDLREGLVAVVSVRLPDPQFEGQTKTRLGNSAVRGLVESLVSEGLMEYFELNPQVAEAI 369
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+ A++A AA++A+++ R+K+ L SS LPGKLADC P +SE++IVEG+SAGGS
Sbjct: 370 VEKATEAMRAREAARKAKEITRRKTALTSSGLPGKLADCVERDPAKSELYIVEGESAGGS 429
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQA+LPLRGKILNVER M KNEEI+NLI ALG G+ G+DF RYH
Sbjct: 430 AKQGRNRHFQAVLPLRGKILNVERARLDKMLKNEEIRNLITALGTGI-GDDFDITKARYH 488
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDG+HIRTLLLTFFYRY + L + G +Y+ PPLY+V +GK V+Y Y D E
Sbjct: 489 KIIIMTDADVDGSHIRTLLLTFFYRYMQPLIEAGYVYIAQPPLYQVRKGKSVKYAYSDEE 548
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+ + +QR+KGLGEM P QLWETT+NPE+R L ++ ++DA EA+ +FS L
Sbjct: 549 LAKLL----EDGKAVVQRYKGLGEMNPEQLWETTMNPEKRTLLRVTLKDAVEADEIFSVL 604
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R+ I+ A V NLD
Sbjct: 605 MGEQVEPRRVFIETHAREVRNLD 627
>gi|423399670|ref|ZP_17376843.1| DNA gyrase subunit B [Bacillus cereus BAG2X1-2]
gi|423461727|ref|ZP_17438523.1| DNA gyrase subunit B [Bacillus cereus BAG5X2-1]
gi|423479640|ref|ZP_17456355.1| DNA gyrase subunit B [Bacillus cereus BAG6X1-1]
gi|401134960|gb|EJQ42566.1| DNA gyrase subunit B [Bacillus cereus BAG5X2-1]
gi|401657791|gb|EJS75296.1| DNA gyrase subunit B [Bacillus cereus BAG2X1-2]
gi|402425235|gb|EJV57390.1| DNA gyrase subunit B [Bacillus cereus BAG6X1-1]
Length = 642
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 251/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F I ++ +T+A R+RELAF
Sbjct: 148 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETIVYEFDTLATRMRELAF 203
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 204 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 259 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 318 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 378 KIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 438 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFAIEKAR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 497 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 557 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 616
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 617 ILMGDKVEPRRNFIQENAKYVKNLD 641
>gi|329767180|ref|ZP_08258707.1| DNA gyrase subunit B [Gemella haemolysans M341]
gi|328836847|gb|EGF86494.1| DNA gyrase subunit B [Gemella haemolysans M341]
Length = 638
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 238/499 (47%), Positives = 345/499 (69%), Gaps = 10/499 (2%)
Query: 6 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 65
K+ RG V +T V + DR GT IRF D ++F +D++ + RIRELAFLN
Sbjct: 148 KFERGDVVQGITV----VGNTDRTGTTIRFKADPEIFQETTVYDYDILRTRIRELAFLNK 203
Query: 66 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLAL 125
+TI L+ E EK + +++ GGL EYV+ LN +K LH+ + ++DG +++++
Sbjct: 204 GITIILKDEREGQEKEE--TFYYEGGLLEYVEMLNENKDALHEAIYVHGEMDGKEVEISM 261
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
Q+ + YS +L YAN+I T +GGTH G K +LTR +NS GKK+K +KDK+ SL+G+ V
Sbjct: 262 QYNT-GYSSNVLSYANNINTHEGGTHESGFKTALTRIINSYGKKNKLIKDKE-SLTGDDV 319
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 245
REGL IIS++ PNP+FEGQTKT+LGN E+ + ++ E L +L +P + I+ K
Sbjct: 320 REGLVAIISIKHPNPQFEGQTKTKLGNSEMSTITNKLFSEELDRFLLENPKIAKIIVEKG 379
Query: 246 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 305
L A +A +AAK+AR+ R+K+ L ++LPGKLADCSS E E+F+VEGDSAGGSAK G
Sbjct: 380 LQASRARIAAKKARESTRRKNALEFTNLPGKLADCSSKDAAECELFLVEGDSAGGSAKLG 439
Query: 306 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 365
R+ +FQAILPL+GKILNVE+ + N+E+++LI A+G+G+ GE + LRYHKI+I
Sbjct: 440 RNSKFQAILPLKGKILNVEKVRIDKVLANDEVRSLITAIGMGI-GETLNIDKLRYHKIVI 498
Query: 366 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 425
+TDADVDG+HIRTLLLTFF+RY + L DEG +Y+ PPLY ++ GK+ YC+ + ELK+
Sbjct: 499 MTDADVDGSHIRTLLLTFFFRYMRELIDEGYVYIARPPLYGLKVGKKEFYCHTEEELKQN 558
Query: 426 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 485
+ Y++QR+KGLGEM +LW+TT++PE R++ Q+ I+DA A+ F +LMG +
Sbjct: 559 IEEHAGDKKYTVQRYKGLGEMNAEELWDTTMDPEHRLMYQVSIDDAQRADAAFDTLMGEK 618
Query: 486 VDTRKELIQ-NAANLVNLD 503
V+ R++ I+ NA N++NLD
Sbjct: 619 VEPRRKFIEDNALNVINLD 637
>gi|227518104|ref|ZP_03948153.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX0104]
gi|227555689|ref|ZP_03985736.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis HH22]
gi|229547125|ref|ZP_04435850.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322]
gi|229550695|ref|ZP_04439420.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
29200]
gi|255974526|ref|ZP_05425112.1| subunit B [Enterococcus faecalis T2]
gi|256618523|ref|ZP_05475369.1| DNA gyrase subunit B [Enterococcus faecalis ATCC 4200]
gi|256761858|ref|ZP_05502438.1| hypothetical protein EFCG_02340 [Enterococcus faecalis T3]
gi|256854985|ref|ZP_05560346.1| hypothetical protein EFYG_02228 [Enterococcus faecalis T8]
gi|256957011|ref|ZP_05561182.1| DNA gyrase subunit B [Enterococcus faecalis DS5]
gi|256960820|ref|ZP_05564991.1| hypothetical protein EFGG_02710 [Enterococcus faecalis Merz96]
gi|256963987|ref|ZP_05568158.1| hypothetical protein EFHG_02347 [Enterococcus faecalis HIP11704]
gi|257078688|ref|ZP_05573049.1| hypothetical protein EFIG_02258 [Enterococcus faecalis JH1]
gi|257081351|ref|ZP_05575712.1| DNA gyrase subunit B [Enterococcus faecalis E1Sol]
gi|257084008|ref|ZP_05578369.1| DNA gyrase subunit B [Enterococcus faecalis Fly1]
gi|257087838|ref|ZP_05582199.1| DNA gyrase subunit B [Enterococcus faecalis D6]
gi|257088490|ref|ZP_05582851.1| DNA gyrase B subunit gyrB [Enterococcus faecalis CH188]
gi|257417430|ref|ZP_05594424.1| DNA gyrase subunit B [Enterococcus faecalis ARO1/DG]
gi|257421347|ref|ZP_05598337.1| DNA gyrase subunit B gyrB [Enterococcus faecalis X98]
gi|293382658|ref|ZP_06628586.1| DNA gyrase, B subunit [Enterococcus faecalis R712]
gi|293387930|ref|ZP_06632466.1| DNA gyrase, B subunit [Enterococcus faecalis S613]
gi|294781253|ref|ZP_06746600.1| DNA gyrase, B subunit [Enterococcus faecalis PC1.1]
gi|307268921|ref|ZP_07550285.1| DNA gyrase, B subunit [Enterococcus faecalis TX4248]
gi|307274016|ref|ZP_07555226.1| DNA gyrase, B subunit [Enterococcus faecalis TX0855]
gi|307276495|ref|ZP_07557615.1| DNA gyrase, B subunit [Enterococcus faecalis TX2134]
gi|307284063|ref|ZP_07564233.1| DNA gyrase, B subunit [Enterococcus faecalis TX0860]
gi|307287177|ref|ZP_07567248.1| DNA gyrase, B subunit [Enterococcus faecalis TX0109]
gi|307296594|ref|ZP_07576414.1| DNA gyrase, B subunit [Enterococcus faecalis TX0411]
gi|312901292|ref|ZP_07760575.1| DNA gyrase, B subunit [Enterococcus faecalis TX0470]
gi|312903111|ref|ZP_07762292.1| DNA gyrase, B subunit [Enterococcus faecalis TX0635]
gi|312908810|ref|ZP_07767749.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 512]
gi|312951716|ref|ZP_07770610.1| DNA gyrase, B subunit [Enterococcus faecalis TX0102]
gi|312979548|ref|ZP_07791230.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 516]
gi|384511969|ref|YP_005707062.1| DNA topoisomerase subunit B [Enterococcus faecalis OG1RF]
gi|384517111|ref|YP_005704416.1| DNA gyrase subunit B [Enterococcus faecalis 62]
gi|397698588|ref|YP_006536376.1| DNA gyrase, B subunit [Enterococcus faecalis D32]
gi|421514187|ref|ZP_15960879.1| DNA gyrase subunit B [Enterococcus faecalis ATCC 29212]
gi|422685146|ref|ZP_16743370.1| DNA gyrase, B subunit [Enterococcus faecalis TX4000]
gi|422688143|ref|ZP_16746303.1| DNA gyrase, B subunit [Enterococcus faecalis TX0630]
gi|422691568|ref|ZP_16749602.1| DNA gyrase, B subunit [Enterococcus faecalis TX0031]
gi|422694316|ref|ZP_16752309.1| DNA gyrase, B subunit [Enterococcus faecalis TX4244]
gi|422697302|ref|ZP_16755247.1| DNA gyrase, B subunit [Enterococcus faecalis TX1346]
gi|422701013|ref|ZP_16758855.1| DNA gyrase, B subunit [Enterococcus faecalis TX1342]
gi|422702817|ref|ZP_16760646.1| DNA gyrase, B subunit [Enterococcus faecalis TX1302]
gi|422707514|ref|ZP_16765207.1| DNA gyrase, B subunit [Enterococcus faecalis TX0043]
gi|422709081|ref|ZP_16766595.1| DNA gyrase, B subunit [Enterococcus faecalis TX0027]
gi|422713181|ref|ZP_16769937.1| DNA gyrase, B subunit [Enterococcus faecalis TX0309A]
gi|422717804|ref|ZP_16774478.1| DNA gyrase, B subunit [Enterococcus faecalis TX0309B]
gi|422719193|ref|ZP_16775841.1| DNA gyrase, B subunit [Enterococcus faecalis TX0017]
gi|422723320|ref|ZP_16779858.1| DNA gyrase, B subunit [Enterococcus faecalis TX2137]
gi|422726393|ref|ZP_16782841.1| DNA gyrase, B subunit [Enterococcus faecalis TX0312]
gi|422728188|ref|ZP_16784606.1| DNA gyrase, B subunit [Enterococcus faecalis TX0012]
gi|422730566|ref|ZP_16786955.1| DNA gyrase, B subunit [Enterococcus faecalis TX0645]
gi|422734914|ref|ZP_16791194.1| DNA gyrase, B subunit [Enterococcus faecalis TX1341]
gi|422741701|ref|ZP_16795724.1| DNA gyrase, B subunit [Enterococcus faecalis TX2141]
gi|422868246|ref|ZP_16914793.1| DNA gyrase, B subunit [Enterococcus faecalis TX1467]
gi|424671212|ref|ZP_18108224.1| DNA gyrase, B subunit [Enterococcus faecalis 599]
gi|424683876|ref|ZP_18120621.1| DNA gyrase, B subunit [Enterococcus faecalis ERV129]
gi|424685955|ref|ZP_18122632.1| DNA gyrase, B subunit [Enterococcus faecalis ERV25]
gi|424689103|ref|ZP_18125694.1| DNA gyrase, B subunit [Enterococcus faecalis ERV31]
gi|424692845|ref|ZP_18129320.1| DNA gyrase, B subunit [Enterococcus faecalis ERV37]
gi|424696423|ref|ZP_18132774.1| DNA gyrase, B subunit [Enterococcus faecalis ERV41]
gi|424699254|ref|ZP_18135482.1| DNA gyrase, B subunit [Enterococcus faecalis ERV62]
gi|424704132|ref|ZP_18140238.1| DNA gyrase, B subunit [Enterococcus faecalis ERV63]
gi|424707526|ref|ZP_18143505.1| DNA gyrase, B subunit [Enterococcus faecalis ERV65]
gi|424716672|ref|ZP_18145975.1| DNA gyrase, B subunit [Enterococcus faecalis ERV68]
gi|424719090|ref|ZP_18148314.1| DNA gyrase, B subunit [Enterococcus faecalis ERV72]
gi|424722657|ref|ZP_18151696.1| DNA gyrase, B subunit [Enterococcus faecalis ERV73]
gi|424726151|ref|ZP_18154831.1| DNA gyrase, B subunit [Enterococcus faecalis ERV81]
gi|424734721|ref|ZP_18163210.1| DNA gyrase, B subunit [Enterococcus faecalis ERV85]
gi|424749321|ref|ZP_18177433.1| DNA gyrase, B subunit [Enterococcus faecalis ERV93]
gi|424757653|ref|ZP_18185389.1| DNA gyrase, B subunit [Enterococcus faecalis R508]
gi|430362672|ref|ZP_19427149.1| DNA gyrase, B subunit [Enterococcus faecalis OG1X]
gi|430367112|ref|ZP_19427775.1| DNA gyrase, B subunit [Enterococcus faecalis M7]
gi|15982567|dbj|BAB69478.1| DNA gyrase B subunit [Enterococcus faecalis]
gi|227074438|gb|EEI12401.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX0104]
gi|227175199|gb|EEI56171.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis HH22]
gi|229304128|gb|EEN70124.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
29200]
gi|229307707|gb|EEN73694.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322]
gi|255967398|gb|EET98020.1| subunit B [Enterococcus faecalis T2]
gi|256598050|gb|EEU17226.1| DNA gyrase subunit B [Enterococcus faecalis ATCC 4200]
gi|256683109|gb|EEU22804.1| hypothetical protein EFCG_02340 [Enterococcus faecalis T3]
gi|256709498|gb|EEU24545.1| hypothetical protein EFYG_02228 [Enterococcus faecalis T8]
gi|256947507|gb|EEU64139.1| DNA gyrase subunit B [Enterococcus faecalis DS5]
gi|256951316|gb|EEU67948.1| hypothetical protein EFGG_02710 [Enterococcus faecalis Merz96]
gi|256954483|gb|EEU71115.1| hypothetical protein EFHG_02347 [Enterococcus faecalis HIP11704]
gi|256986718|gb|EEU74020.1| hypothetical protein EFIG_02258 [Enterococcus faecalis JH1]
gi|256989381|gb|EEU76683.1| DNA gyrase subunit B [Enterococcus faecalis E1Sol]
gi|256992038|gb|EEU79340.1| DNA gyrase subunit B [Enterococcus faecalis Fly1]
gi|256995868|gb|EEU83170.1| DNA gyrase subunit B [Enterococcus faecalis D6]
gi|256997302|gb|EEU83822.1| DNA gyrase B subunit gyrB [Enterococcus faecalis CH188]
gi|257159258|gb|EEU89218.1| DNA gyrase subunit B [Enterococcus faecalis ARO1/DG]
gi|257163171|gb|EEU93131.1| DNA gyrase subunit B gyrB [Enterococcus faecalis X98]
gi|291079964|gb|EFE17328.1| DNA gyrase, B subunit [Enterococcus faecalis R712]
gi|291082667|gb|EFE19630.1| DNA gyrase, B subunit [Enterococcus faecalis S613]
gi|294451716|gb|EFG20171.1| DNA gyrase, B subunit [Enterococcus faecalis PC1.1]
gi|295112344|emb|CBL30981.1| DNA gyrase subunit B [Enterococcus sp. 7L76]
gi|306495930|gb|EFM65518.1| DNA gyrase, B subunit [Enterococcus faecalis TX0411]
gi|306501775|gb|EFM71066.1| DNA gyrase, B subunit [Enterococcus faecalis TX0109]
gi|306503434|gb|EFM72683.1| DNA gyrase, B subunit [Enterococcus faecalis TX0860]
gi|306506822|gb|EFM75972.1| DNA gyrase, B subunit [Enterococcus faecalis TX2134]
gi|306509324|gb|EFM78384.1| DNA gyrase, B subunit [Enterococcus faecalis TX0855]
gi|306514729|gb|EFM83280.1| DNA gyrase, B subunit [Enterococcus faecalis TX4248]
gi|310625248|gb|EFQ08531.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 512]
gi|310630289|gb|EFQ13572.1| DNA gyrase, B subunit [Enterococcus faecalis TX0102]
gi|310633502|gb|EFQ16785.1| DNA gyrase, B subunit [Enterococcus faecalis TX0635]
gi|311287730|gb|EFQ66286.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 516]
gi|311291669|gb|EFQ70225.1| DNA gyrase, B subunit [Enterococcus faecalis TX0470]
gi|315026673|gb|EFT38605.1| DNA gyrase, B subunit [Enterococcus faecalis TX2137]
gi|315030118|gb|EFT42050.1| DNA gyrase, B subunit [Enterococcus faecalis TX4000]
gi|315033552|gb|EFT45484.1| DNA gyrase, B subunit [Enterococcus faecalis TX0017]
gi|315036375|gb|EFT48307.1| DNA gyrase, B subunit [Enterococcus faecalis TX0027]
gi|315143591|gb|EFT87607.1| DNA gyrase, B subunit [Enterococcus faecalis TX2141]
gi|315148271|gb|EFT92287.1| DNA gyrase, B subunit [Enterococcus faecalis TX4244]
gi|315151295|gb|EFT95311.1| DNA gyrase, B subunit [Enterococcus faecalis TX0012]
gi|315153721|gb|EFT97737.1| DNA gyrase, B subunit [Enterococcus faecalis TX0031]
gi|315155119|gb|EFT99135.1| DNA gyrase, B subunit [Enterococcus faecalis TX0043]
gi|315158751|gb|EFU02768.1| DNA gyrase, B subunit [Enterococcus faecalis TX0312]
gi|315163335|gb|EFU07352.1| DNA gyrase, B subunit [Enterococcus faecalis TX0645]
gi|315165723|gb|EFU09740.1| DNA gyrase, B subunit [Enterococcus faecalis TX1302]
gi|315168224|gb|EFU12241.1| DNA gyrase, B subunit [Enterococcus faecalis TX1341]
gi|315170508|gb|EFU14525.1| DNA gyrase, B subunit [Enterococcus faecalis TX1342]
gi|315174178|gb|EFU18195.1| DNA gyrase, B subunit [Enterococcus faecalis TX1346]
gi|315573987|gb|EFU86178.1| DNA gyrase, B subunit [Enterococcus faecalis TX0309B]
gi|315578843|gb|EFU91034.1| DNA gyrase, B subunit [Enterococcus faecalis TX0630]
gi|315581938|gb|EFU94129.1| DNA gyrase, B subunit [Enterococcus faecalis TX0309A]
gi|323479244|gb|ADX78683.1| DNA gyrase, B subunit [Enterococcus faecalis 62]
gi|327533858|gb|AEA92692.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
faecalis OG1RF]
gi|329576322|gb|EGG57837.1| DNA gyrase, B subunit [Enterococcus faecalis TX1467]
gi|397335227|gb|AFO42899.1| DNA gyrase, B subunit [Enterococcus faecalis D32]
gi|401672707|gb|EJS79173.1| DNA gyrase subunit B [Enterococcus faecalis ATCC 29212]
gi|402359313|gb|EJU93949.1| DNA gyrase, B subunit [Enterococcus faecalis 599]
gi|402363750|gb|EJU98209.1| DNA gyrase, B subunit [Enterococcus faecalis ERV129]
gi|402368565|gb|EJV02877.1| DNA gyrase, B subunit [Enterococcus faecalis ERV25]
gi|402369341|gb|EJV03626.1| DNA gyrase, B subunit [Enterococcus faecalis ERV31]
gi|402376725|gb|EJV10651.1| DNA gyrase, B subunit [Enterococcus faecalis ERV37]
gi|402376743|gb|EJV10666.1| DNA gyrase, B subunit [Enterococcus faecalis ERV62]
gi|402377901|gb|EJV11789.1| DNA gyrase, B subunit [Enterococcus faecalis ERV41]
gi|402382703|gb|EJV16353.1| DNA gyrase, B subunit [Enterococcus faecalis ERV63]
gi|402384310|gb|EJV17868.1| DNA gyrase, B subunit [Enterococcus faecalis ERV65]
gi|402387286|gb|EJV20771.1| DNA gyrase, B subunit [Enterococcus faecalis ERV68]
gi|402397208|gb|EJV30238.1| DNA gyrase, B subunit [Enterococcus faecalis ERV72]
gi|402400529|gb|EJV33351.1| DNA gyrase, B subunit [Enterococcus faecalis ERV81]
gi|402401442|gb|EJV34216.1| DNA gyrase, B subunit [Enterococcus faecalis ERV73]
gi|402406399|gb|EJV38956.1| DNA gyrase, B subunit [Enterococcus faecalis ERV85]
gi|402406469|gb|EJV39020.1| DNA gyrase, B subunit [Enterococcus faecalis R508]
gi|402407982|gb|EJV40478.1| DNA gyrase, B subunit [Enterococcus faecalis ERV93]
gi|429511943|gb|ELA01563.1| DNA gyrase, B subunit [Enterococcus faecalis OG1X]
gi|429516769|gb|ELA06246.1| DNA gyrase, B subunit [Enterococcus faecalis M7]
Length = 649
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 246/511 (48%), Positives = 344/511 (67%), Gaps = 22/511 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L ++ DR GT + F PD ++FT +D + +A R+RELAF
Sbjct: 150 YYQEYRRGAVVDDLKV----IEETDRHGTTVHFIPDPEIFTETTVYDFDKLATRVRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK-----KPLHDVVGFRKDVD 117
LN L I++ ED + EY + GG++ YV+ LN +K +P+ + G ++D
Sbjct: 206 LNRGLHISI--EDRREGQEDKKEYHYEGGIKSYVEHLNANKDVIFPEPIF-IEGEQQD-- 260
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
IT+++++Q+ +D Y +L +AN+I T +GGTH G K SLTR +N +K K +K+ D
Sbjct: 261 -ITVEVSMQY-TDGYHSNILSFANNIHTYEGGTHESGFKTSLTRVINDYARKQKLMKEND 318
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
L+GE VREGLT ++S++ P+P+FEGQTKT+LGN EVR V D+ EY T++L +P V
Sbjct: 319 EKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEYFTKFLMENPTV 378
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K + A KA LAAKRAR++ R+K L S+LPGKLADCSS PE+ E+FIVEGDS
Sbjct: 379 GKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLPGKLADCSSKDPEKCELFIVEGDS 438
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGR R FQAILP+RGKILNVE+ + NEEI++L A+G G GEDF
Sbjct: 439 AGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GEDFDVSK 497
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC- 416
RYHK++I+TDADVDGAHIRTLLLT FYR+ + + + G +Y+ PPLY V++GK + Y
Sbjct: 498 ARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYVYIAQPPLYGVKQGKNITYVQ 557
Query: 417 ---YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
+ + EL KV P++ S+QR+KGLGEM QLWETT++PE+R++ ++ ++DA E
Sbjct: 558 PGKHAEEELAKVLEELPASPKPSVQRYKGLGEMDDHQLWETTMDPEKRLMARVSVDDAIE 617
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLV-NLD 503
A+ +F LMG RV+ R+ I+ A+ V NLD
Sbjct: 618 ADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 648
>gi|255971553|ref|ZP_05422139.1| DNA gyrase subunit B [Enterococcus faecalis T1]
gi|255962571|gb|EET95047.1| DNA gyrase subunit B [Enterococcus faecalis T1]
Length = 649
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 246/511 (48%), Positives = 344/511 (67%), Gaps = 22/511 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L ++ DR GT + F PD ++FT +D + +A R+RELAF
Sbjct: 150 YYQEYRRGAVVDDLKV----IEETDRHGTTVHFIPDPEIFTETTVYDFDKLATRVRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK-----KPLHDVVGFRKDVD 117
LN L I++ ED + EY + GG++ YV+ LN +K +P+ + G ++D
Sbjct: 206 LNRGLHISI--EDRREGQEDKKEYHYEGGIKSYVEHLNANKDVIFPEPIF-IEGEQQD-- 260
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
IT+++++Q+ +D Y +L +AN+I T +GGTH G K SLTR +N +K K +K+ D
Sbjct: 261 -ITVEVSMQY-ADGYHSNILSFANNIHTYEGGTHESGFKTSLTRVINDYARKQKLMKEND 318
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
L+GE VREGLT ++S++ P+P+FEGQTKT+LGN EVR V D+ EY T++L +P V
Sbjct: 319 EKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEYFTKFLMENPTV 378
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K + A KA LAAKRAR++ R+K L S+LPGKLADCSS PE+ E+FIVEGDS
Sbjct: 379 GKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLPGKLADCSSKDPEKCELFIVEGDS 438
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGR R FQAILP+RGKILNVE+ + NEEI++L A+G G GEDF
Sbjct: 439 AGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GEDFDVSK 497
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC- 416
RYHK++I+TDADVDGAHIRTLLLT FYR+ + + + G +Y+ PPLY V++GK + Y
Sbjct: 498 ARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYVYIAQPPLYGVKQGKNITYVQ 557
Query: 417 ---YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
+ + EL KV P++ S+QR+KGLGEM QLWETT++PE+R++ ++ ++DA E
Sbjct: 558 PGKHAEEELAKVLEELPASPKPSVQRYKGLGEMDDHQLWETTMDPEKRLMARVSVDDAIE 617
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLV-NLD 503
A+ +F LMG RV+ R+ I+ A+ V NLD
Sbjct: 618 ADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 648
>gi|229014660|ref|ZP_04171774.1| DNA gyrase subunit B [Bacillus mycoides DSM 2048]
gi|229170197|ref|ZP_04297883.1| DNA gyrase subunit B [Bacillus cereus AH621]
gi|423490641|ref|ZP_17467323.1| DNA gyrase subunit B [Bacillus cereus BtB2-4]
gi|423496365|ref|ZP_17473009.1| DNA gyrase subunit B [Bacillus cereus CER057]
gi|423496841|ref|ZP_17473458.1| DNA gyrase subunit B [Bacillus cereus CER074]
gi|423513056|ref|ZP_17489586.1| DNA gyrase subunit B [Bacillus cereus HuA2-1]
gi|423520150|ref|ZP_17496631.1| DNA gyrase subunit B [Bacillus cereus HuA2-4]
gi|423595333|ref|ZP_17571363.1| DNA gyrase subunit B [Bacillus cereus VD048]
gi|423597250|ref|ZP_17573250.1| DNA gyrase subunit B [Bacillus cereus VD078]
gi|423659655|ref|ZP_17634824.1| DNA gyrase subunit B [Bacillus cereus VDM022]
gi|423671041|ref|ZP_17646070.1| DNA gyrase subunit B [Bacillus cereus VDM034]
gi|423672736|ref|ZP_17647675.1| DNA gyrase subunit B [Bacillus cereus VDM062]
gi|228613298|gb|EEK70437.1| DNA gyrase subunit B [Bacillus cereus AH621]
gi|228746671|gb|EEL96560.1| DNA gyrase subunit B [Bacillus mycoides DSM 2048]
gi|401149547|gb|EJQ57018.1| DNA gyrase subunit B [Bacillus cereus CER057]
gi|401156743|gb|EJQ64146.1| DNA gyrase subunit B [Bacillus cereus HuA2-4]
gi|401163261|gb|EJQ70608.1| DNA gyrase subunit B [Bacillus cereus CER074]
gi|401222009|gb|EJR28611.1| DNA gyrase subunit B [Bacillus cereus VD048]
gi|401238782|gb|EJR45214.1| DNA gyrase subunit B [Bacillus cereus VD078]
gi|401294535|gb|EJS00163.1| DNA gyrase subunit B [Bacillus cereus VDM034]
gi|401304283|gb|EJS09840.1| DNA gyrase subunit B [Bacillus cereus VDM022]
gi|401311250|gb|EJS16557.1| DNA gyrase subunit B [Bacillus cereus VDM062]
gi|402428986|gb|EJV61077.1| DNA gyrase subunit B [Bacillus cereus BtB2-4]
gi|402446099|gb|EJV77962.1| DNA gyrase subunit B [Bacillus cereus HuA2-1]
Length = 642
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L + DR GT RF PD ++FT +++ +T+A R+RELAF
Sbjct: 148 HYQKYERGVPAADLKV----IGETDRTGTITRFKPDSEIFTETTEYEFDTLATRMRELAF 203
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 204 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 259 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 318 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 378 KIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 438 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFAIEKAR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 497 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNN 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 557 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 616
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 617 ILMGDKVEPRRNFIQENAKYVKNLD 641
>gi|145577989|gb|ABP82713.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
weihenstephanensis]
gi|145578003|gb|ABP82720.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar vazensis]
gi|145578011|gb|ABP82724.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
weihenstephanensis]
Length = 632
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L + DR GT RF PD ++FT +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGVPAADLKV----IGETDRTGTITRFKPDSEIFTETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFAIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNN 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|423369455|ref|ZP_17346886.1| DNA gyrase subunit B [Bacillus cereus VD142]
gi|401077892|gb|EJP86219.1| DNA gyrase subunit B [Bacillus cereus VD142]
Length = 642
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L + DR GT RF PD ++FT +++ +T+A R+RELAF
Sbjct: 148 HYQKYERGVPAADLKV----IGETDRTGTITRFKPDSEIFTETTEYEFDTLATRMRELAF 203
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 204 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 259 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 318 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 378 KIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 438 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFAIEKAR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 497 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNN 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 557 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 616
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 617 ILMGDKVEPRRNFIQENAKYVKNLD 641
>gi|308066844|ref|YP_003868449.1| DNA gyrase subunit B [Paenibacillus polymyxa E681]
gi|305856123|gb|ADM67911.1| DNA gyrase subunit B [Paenibacillus polymyxa E681]
Length = 636
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/506 (49%), Positives = 346/506 (68%), Gaps = 18/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG P V + D GT+ F+PD Q+FT +D++T+ RIRELAF
Sbjct: 143 YEQEYHRGAP----QYDVRVIGDTDETGTQTTFYPDDQIFTETTVYDYDTLQTRIRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I+L +D + + + GG+ EYVQ+LN ++ LH+ V G R D
Sbjct: 199 LNKGIAISL----TDERTGASDTFHYEGGISEYVQFLNQKREALHEQPIYVEGSR---DM 251
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++ALQ+ +D+Y++ + +AN+I T +GGTH G K++LTR +N +K+ +KD +
Sbjct: 252 IQVEVALQY-NDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYARKNGLIKDNNA 310
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+G+ VREGLT IISV++P P+FEGQTKT+LGN EVR +V+ E L E+LE +P V
Sbjct: 311 NLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESLFAEKLQEFLEENPSVS 370
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
++ KSL A +A AA++AR+L R+KS L SSLPGKLADCSS SE++IVEGDSA
Sbjct: 371 RRVVDKSLQAARAREAARKARELTRRKSALEISSLPGKLADCSSKDASISELYIVEGDSA 430
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILP+RGKILNVE+ + ++EI++++ A+G G+ G+DF
Sbjct: 431 GGSAKQGRDRHFQAILPIRGKILNVEKARLDRILSSDEIRSMVTAMGTGI-GDDFDIAKA 489
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHK+II+TDADVDGAHIRTLLLTFFYRY + + D G IY+ PPL+KVER K V+Y
Sbjct: 490 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGYIYIAQPPLFKVERNKVVRYANS 549
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+AE ++ F NA Y++QR+KGLGEM QLWETT++PE R + Q+ + DA A+ +F
Sbjct: 550 EAERDEIIREFGENAKYNVQRYKGLGEMNATQLWETTMDPESRTMLQVTVSDAMLADTLF 609
Query: 479 SSLMGARVDTRKELIQNAANLV-NLD 503
++LMG V+ R++ IQ A V NLD
Sbjct: 610 NTLMGDNVEPRRDFIQEHAKYVKNLD 635
>gi|228994212|ref|ZP_04154112.1| DNA gyrase subunit B [Bacillus pseudomycoides DSM 12442]
gi|228765664|gb|EEM14318.1| DNA gyrase subunit B [Bacillus pseudomycoides DSM 12442]
Length = 640
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 245/503 (48%), Positives = 343/503 (68%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L + D GT RF PD ++F ++D +T+A R+RELAF
Sbjct: 146 HYQKYERGIPAADLKV----IGETDHTGTITRFKPDPEIFKETTEYDFDTLATRMRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + + + + E Q E+ + GG++ YV+ LN K+P+H+ V DGI +
Sbjct: 202 LNRNIKLII---EDKRENKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +L+
Sbjct: 259 EVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLT 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V I
Sbjct: 318 GEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAGGS
Sbjct: 378 VDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISEIYIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E RYH
Sbjct: 438 AKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D E
Sbjct: 497 KVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNDKE 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+K+ + P++ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F L
Sbjct: 557 LEKILAELPAHPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEIL 616
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ IQ NA + NLD
Sbjct: 617 MGDKVEPRRNFIQENAKYVKNLD 639
>gi|319893736|ref|YP_004150611.1| DNA gyrase subunit B [Staphylococcus pseudintermedius HKU10-03]
gi|386318035|ref|YP_006014198.1| DNA gyrase subunit B [Staphylococcus pseudintermedius ED99]
gi|317163432|gb|ADV06975.1| DNA gyrase subunit B [Staphylococcus pseudintermedius HKU10-03]
gi|323463206|gb|ADX75359.1| DNA gyrase, B subunit [Staphylococcus pseudintermedius ED99]
Length = 640
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 246/502 (49%), Positives = 331/502 (65%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+HQ Y +G P L V D+ GT IRF D +F +++ T+ RIRELAF
Sbjct: 145 HHQAYHKGVPAFDLK----QVGDTDQTGTVIRFKADGTIFQETTVYNYETLQKRIRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L E D E + + Y + GG++ YV+ +N +K+PLHD V + D I +
Sbjct: 201 LNKGIRITLTDE-RDEENVREDSYHYEGGIKSYVELINENKEPLHDEPVYVHQTRDDIEV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S ++ +L YAN+I T +GGTH +G K +LTR LN+ G +SK +K+ LS
Sbjct: 260 EIALQYNS-GFATNLLTYANNIHTYEGGTHEDGFKRALTRVLNNYGTQSKLIKEDKDRLS 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR++VD+ E +L HP V I
Sbjct: 319 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRVFSELFERFLYEHPQVARII 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS P ESEIF+VEGDSAGGS
Sbjct: 379 VEKGIMASRARIAAKKAREVTRRKSALDISSLPGKLADCSSKDPSESEIFLVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ ++ A G G+ GE F RYH
Sbjct: 439 TKSGRDSRTQAILPLRGKILNVEKARLDKILNNNEIRQMVTAFGTGIGGE-FDISKARYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 498 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K +SI R+KGLGEM QLWETT+NPE R + Q+ ++DA EA+ F L
Sbjct: 558 LDKLKEKLNPTPKWSIARYKGLGEMNADQLWETTMNPENRAMLQVTLDDAIEADQTFEML 617
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 618 MGDVVENRRQFIEDNAVYANLD 639
>gi|163938018|ref|YP_001642902.1| DNA gyrase subunit B [Bacillus weihenstephanensis KBAB4]
gi|229136319|ref|ZP_04265066.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST196]
gi|163860215|gb|ABY41274.1| DNA gyrase, B subunit [Bacillus weihenstephanensis KBAB4]
gi|228647191|gb|EEL03279.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST196]
Length = 640
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L + DR GT RF PD ++FT +++ +T+A R+RELAF
Sbjct: 146 HYQKYERGVPAADLKV----IGETDRTGTITRFKPDSEIFTETTEYEFDTLATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFAIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNN 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>gi|229148043|ref|ZP_04276382.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST24]
gi|228635468|gb|EEK91959.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST24]
Length = 642
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 148 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 203
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H D V DGI
Sbjct: 204 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEDPVYVEGSKDGI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 259 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 318 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 378 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 438 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 497 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYND 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 557 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 616
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 617 ILMGDKVEPRRNFIQENAKYVKNLD 641
>gi|424677999|ref|ZP_18114846.1| DNA gyrase, B subunit [Enterococcus faecalis ERV103]
gi|424679672|ref|ZP_18116489.1| DNA gyrase, B subunit [Enterococcus faecalis ERV116]
gi|402352698|gb|EJU87539.1| DNA gyrase, B subunit [Enterococcus faecalis ERV103]
gi|402355888|gb|EJU90643.1| DNA gyrase, B subunit [Enterococcus faecalis ERV116]
Length = 649
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 246/511 (48%), Positives = 344/511 (67%), Gaps = 22/511 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L ++ DR GT + F PD ++FT +D + +A R+RELAF
Sbjct: 150 YYQEYRRGAVVDDLKV----IEETDRHGTTVHFIPDPEIFTETTVYDFDKLATRVRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK-----KPLHDVVGFRKDVD 117
LN L I++ ED + EY + GG++ YV+ LN +K +P+ + G ++D
Sbjct: 206 LNRGLHISI--EDRRGGQEDKKEYHYEGGIKSYVEHLNANKDVIFPEPIF-IEGEQQD-- 260
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
IT+++++Q+ +D Y +L +AN+I T +GGTH G K SLTR +N +K K +K+ D
Sbjct: 261 -ITVEVSMQY-TDGYHSNILSFANNIHTYEGGTHESGFKTSLTRVINDYARKQKLMKEND 318
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
L+GE VREGLT ++S++ P+P+FEGQTKT+LGN EVR V D+ EY T++L +P V
Sbjct: 319 EKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEYFTKFLMENPTV 378
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K + A KA LAAKRAR++ R+K L S+LPGKLADCSS PE+ E+FIVEGDS
Sbjct: 379 GKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLPGKLADCSSKDPEKCELFIVEGDS 438
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGR R FQAILP+RGKILNVE+ + NEEI++L A+G G GEDF
Sbjct: 439 AGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GEDFDVSK 497
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC- 416
RYHK++I+TDADVDGAHIRTLLLT FYR+ + + + G +Y+ PPLY V++GK + Y
Sbjct: 498 ARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYVYIAQPPLYGVKQGKNITYVQ 557
Query: 417 ---YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
+ + EL KV P++ S+QR+KGLGEM QLWETT++PE+R++ ++ ++DA E
Sbjct: 558 PGKHAEEELAKVLEELPASPKPSVQRYKGLGEMDDHQLWETTMDPEKRLMARVSVDDAIE 617
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLV-NLD 503
A+ +F LMG RV+ R+ I+ A+ V NLD
Sbjct: 618 ADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 648
>gi|310639477|ref|YP_003944235.1| DNA gyrase subunit b [Paenibacillus polymyxa SC2]
gi|386038696|ref|YP_005957650.1| DNA gyrase subunit B [Paenibacillus polymyxa M1]
gi|309244427|gb|ADO53994.1| DNA gyrase subunit B [Paenibacillus polymyxa SC2]
gi|343094734|emb|CCC82943.1| DNA gyrase subunit B [Paenibacillus polymyxa M1]
Length = 636
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 249/506 (49%), Positives = 347/506 (68%), Gaps = 18/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG P V + + GT+ F+PD+Q+FT +D++T+ RIRELAF
Sbjct: 143 YEQEYHRGAP----QYDVRVIGDTEETGTQTTFYPDEQIFTETTVYDYDTLQTRIRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I+L +D + + + GG+ EYVQ+LN ++ LH+ V G R D
Sbjct: 199 LNKGIAISL----TDERTGASDTFHYEGGISEYVQFLNQKREALHEQPIYVEGSR---DM 251
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++ALQ+ +D+Y++ + +AN+I T +GGTH G K++LTR +N +K+ +KD +
Sbjct: 252 IQVEVALQY-NDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYARKNGLIKDNNA 310
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+G+ VREGLT IISV++P P+FEGQTKT+LGN EVR +V+ E L E+LE +P V
Sbjct: 311 NLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESLFAEKLQEFLEENPSVS 370
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
++ KSL A +A AA++AR+L R+KS L SSLPGKLADCSS SE++IVEGDSA
Sbjct: 371 RRVVDKSLQAARAREAARKARELTRRKSALEISSLPGKLADCSSKDASISELYIVEGDSA 430
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILP+RGKILNVE+ + ++EI++++ A+G G+ G+DF
Sbjct: 431 GGSAKQGRDRHFQAILPIRGKILNVEKARLDRILSSDEIRSMVTAMGTGI-GDDFDITKA 489
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHK+II+TDADVDGAHIRTLLLTFFYRY + + D G IY+ PPL+KVER K V+Y
Sbjct: 490 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGYIYIAQPPLFKVERNKVVRYANS 549
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+AE ++ F NA Y++QR+KGLGEM QLWETT++PE R + Q+ + DA A+ +F
Sbjct: 550 EAERDEIIKEFGENAKYNVQRYKGLGEMNATQLWETTMDPESRTMLQVTVSDAMLADTLF 609
Query: 479 SSLMGARVDTRKELIQNAANLV-NLD 503
++LMG V+ R++ IQ A V NLD
Sbjct: 610 NTLMGDNVEPRRDFIQEHAKYVKNLD 635
>gi|257871393|ref|ZP_05651046.1| DNA gyrase B subunit [Enterococcus gallinarum EG2]
gi|257805557|gb|EEV34379.1| DNA gyrase B subunit [Enterococcus gallinarum EG2]
Length = 649
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 245/507 (48%), Positives = 338/507 (66%), Gaps = 14/507 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L + DR GT + F PD ++FT F+ + +A R+RELAF
Sbjct: 150 YYQEYHRGAVVEDLKV----IGETDRHGTTVHFVPDPEIFTETTVFNFDKLATRVRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I++ ED E EY + GG++ YV+ LN K + + + + GIT+
Sbjct: 206 LNRGLKISI--EDKREEHPVLKEYHYDGGIKSYVEHLNASKTVIFPEPIYLEGEQQGITV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+++LQ+ +D+Y + +L +AN+I T +GGTH G K +LTR +N +KSK +K+ D +L+
Sbjct: 264 EVSLQY-TDSYHNNLLSFANNIHTYEGGTHESGFKTALTRVINDYARKSKLMKENDENLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +IS++ P+P+FEGQTKT+LGN EVR V D+ E+ T++L +P V +
Sbjct: 323 GEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEHFTKFLMENPAVGRQV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A KA AAKRAR++ R+K L S+LPGKLADCSS PE+ E+FIVEGDSAGGS
Sbjct: 383 VEKGLLASKARQAAKRAREMTRRKGALEISNLPGKLADCSSNDPEKCELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RYH
Sbjct: 443 AKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD--- 418
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PPLY V++GK + Y
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQPPLYGVKQGKNIHYIQPGKN 561
Query: 419 -DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ +LK S P+ S+QR+KGLGEM QLWETT++PE RM+ ++ ++DA EA+ +
Sbjct: 562 AEQDLKNTIESLPATPKPSVQRYKGLGEMDDHQLWETTMDPENRMMLRVSVDDAIEADQI 621
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
F LMG RV+ R+ I+ A+ V NLD
Sbjct: 622 FEMLMGDRVEPRRAFIEENAHYVKNLD 648
>gi|29374666|ref|NP_813818.1| DNA gyrase subunit B [Enterococcus faecalis V583]
gi|257418838|ref|ZP_05595832.1| DNA gyrase B gyrB [Enterococcus faecalis T11]
gi|29342124|gb|AAO79890.1| DNA gyrase, B subunit [Enterococcus faecalis V583]
gi|257160666|gb|EEU90626.1| DNA gyrase B gyrB [Enterococcus faecalis T11]
Length = 642
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 243/507 (47%), Positives = 340/507 (67%), Gaps = 14/507 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L ++ DR GT + F PD ++FT +D + +A R+RELAF
Sbjct: 143 YYQEYRRGAVVDDLKV----IEETDRHGTTVHFIPDPEIFTETTVYDFDKLATRVRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I++ ED + EY + GG++ YV+ LN +K + + + + IT+
Sbjct: 199 LNRGLHISI--EDRREGQEDKKEYHYEGGIKSYVEHLNANKDVIFPEPIFIEGEQQDITV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ +D Y +L +AN+I T +GGTH G K SLTR +N +K K +K+ D L+
Sbjct: 257 EVSMQY-TDGYHSNILSFANNIHTYEGGTHESGFKTSLTRVINDYARKQKLMKENDEKLT 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT ++S++ P+P+FEGQTKT+LGN EVR V D+ EY T++L +P V I
Sbjct: 316 GEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEYFTKFLMENPTVGKQI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA LAAKRAR++ R+K L S+LPGKLADCSS PE+ E+FIVEGDSAGGS
Sbjct: 376 VEKGMLASKARLAAKRAREVTRRKGALEISNLPGKLADCSSKDPEKCELFIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R FQAILP+RGKILNVE+ + NEEI++L A+G G GEDF RYH
Sbjct: 436 AKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GEDFDVSKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC----Y 417
K++I+TDADVDGAHIRTLLLT FYR+ + + + G +Y+ PPLY V++GK + Y +
Sbjct: 495 KLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYVYIAQPPLYGVKQGKNITYVQPGKH 554
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ EL KV P++ S+QR+KGLGEM QLWETT++PE+R++ ++ ++DA EA+ +
Sbjct: 555 AEEELAKVLEELPASPKPSVQRYKGLGEMDDHQLWETTMDPEKRLMARVSVDDAIEADQI 614
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
F LMG RV+ R+ I+ A+ V NLD
Sbjct: 615 FEMLMGDRVEPRRAFIEENAHYVKNLD 641
>gi|145578025|gb|ABP82731.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
weihenstephanensis]
Length = 632
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L + DR GT RF PD ++FT +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPAADLKV----IGETDRTGTITRFKPDAEIFTETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNN 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|304405884|ref|ZP_07387542.1| DNA gyrase, B subunit [Paenibacillus curdlanolyticus YK9]
gi|304345127|gb|EFM10963.1| DNA gyrase, B subunit [Paenibacillus curdlanolyticus YK9]
Length = 636
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 250/503 (49%), Positives = 342/503 (67%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG P + + + GT ++F PD ++FT +++ + RIRELAF
Sbjct: 143 YQQEYRRGAPQYDIKV----IGDSEETGTIVQFKPDPEIFTETTVYEYEILQSRIRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN ++I+L +D Q N Y + GG+ E+V++LN +++ LH+ + + D I +
Sbjct: 199 LNKGISISL----TDERTGQSNIYKYDGGIIEFVKYLNRNREALHETPIYVEGEKDHIQV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+YSD + +AN+I T +GGTH G K++LTR +N +++ ++KD D +LS
Sbjct: 255 EVALQY-NDSYSDNIYSFANNINTHEGGTHESGFKSALTRIINDYARRTNSIKDNDSNLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IISV++P P+FEGQTKT+LGN EVR +V+ E L E+L+ +P V I
Sbjct: 314 GDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESFFAEKLQEFLDENPSVSKRI 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A AA++AR+L R+KS L SSLPGKLADCSS SE++IVEGDSAGGS
Sbjct: 374 VEKGLQASRAREAARKARELTRRKSALEVSSLPGKLADCSSKDASISELYIVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N EI+ +I ALG G+ G+DF RYH
Sbjct: 434 AKQGRDRHFQAILPLRGKILNVEKARLDRILGNAEIRAIITALGTGI-GDDFDIAKARYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYRY + + D G IY+ PPL+KVER K V+Y + E
Sbjct: 493 KIIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGFIYIAQPPLFKVERNKVVRYAQSEKE 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
++ + F ++QR+KGLGEM QLWETT++PE R + Q+ IEDA EA+VVF +L
Sbjct: 553 RDQIIAEFGEGVKVNVQRYKGLGEMNATQLWETTMDPESRTMLQVTIEDAMEADVVFDTL 612
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG V+ R++ I A V NLD
Sbjct: 613 MGDNVEPRRDFIHQYAKYVKNLD 635
>gi|164510802|emb|CAK18883.1| topoisomerase II subunit B [Staphylococcus pseudintermedius]
Length = 611
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 245/502 (48%), Positives = 331/502 (65%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+HQ Y +G P L V D+ GT IRF D +F +++ T+ RIRELAF
Sbjct: 116 HHQAYHKGVPAFDLK----QVGDTDQTGTVIRFKADGTIFQETTVYNYETLQKRIRELAF 171
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L E D E + + Y + GG++ YV+ +N +K+PLHD + + D I +
Sbjct: 172 LNKGIRITLTDE-RDEENVREDSYHYEGGIKSYVELINENKEPLHDEPIYVHQTRDDIEV 230
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S ++ +L YAN+I T +GGTH +G K +LTR LN+ G +SK +K+ LS
Sbjct: 231 EIALQYNS-GFATNLLTYANNIHTYEGGTHEDGFKRALTRVLNNYGTQSKLIKEDKDRLS 289
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR++VD+ E +L HP V I
Sbjct: 290 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRVFSELFERFLYEHPQVARII 349
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS P ESEIF+VEGDSAGGS
Sbjct: 350 VEKGIMASRARIAAKKAREVTRRKSALDISSLPGKLADCSSKDPSESEIFLVEGDSAGGS 409
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ ++ A G G+ GE F RYH
Sbjct: 410 TKSGRDSRTQAILPLRGKILNVEKARLDKILNNNEIRQMVTAFGTGIGGE-FDISKARYH 468
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 469 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 528
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K +SI R+KGLGEM QLWETT+NPE R + Q+ ++DA EA+ F L
Sbjct: 529 LDKLKEKLNPTPKWSIARYKGLGEMNADQLWETTMNPENRAMLQVTLDDAIEADQTFEML 588
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 589 MGDVVENRRQFIEDNAVYANLD 610
>gi|134297887|ref|YP_001111383.1| DNA gyrase subunit B [Desulfotomaculum reducens MI-1]
gi|134050587|gb|ABO48558.1| DNA gyrase subunit B [Desulfotomaculum reducens MI-1]
Length = 638
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 250/503 (49%), Positives = 349/503 (69%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+YSRG P T L V + GT++ F PD+++F + F T++ RIRELA+
Sbjct: 145 YKQEYSRGIPTTELQI----VGNSKTTGTKVTFKPDEEIFEELV-FSLETLSQRIRELAY 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I L+ + DP Q +Y GG++++V+ LN +K+ +H + + + I +
Sbjct: 200 LNKGIKIILQDKRKDPVAEQIFQY--DGGIKDFVKHLNRNKQTIHTKPIYVSGEKEQIVV 257
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y++ ML YAN+I T+DGGTH G+K +LTR +N G++ +K+ D +LS
Sbjct: 258 EVAIQY-NDGYTENMLSYANNIHTVDGGTHEVGLKTALTRVINDYGRQHGVLKNNDANLS 316
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REG T +ISV+VP P+FEGQTKT+LGN EVR +VD E L+ YL +P V I
Sbjct: 317 GEDIREGATIVISVKVPEPQFEGQTKTKLGNSEVRGIVDSIFAEKLSTYLVENPSVAKKI 376
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K ++A +A AA++AR+L R+KS L + SLPGKLADCS P SEI++VEGDSAGGS
Sbjct: 377 IEKGITAARAREAARKARELTRRKSALETMSLPGKLADCSEKDPSVSEIYLVEGDSAGGS 436
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+RRFQAILPL+GKILNVE+ + NEEI+ +I A+G G+ GEDF RYH
Sbjct: 437 AKQGRERRFQAILPLKGKILNVEKARMDKILANEEIRAMITAMGTGI-GEDFDIAKARYH 495
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLL+TFFYRY + L + G ++V PPLY+V +GK YCY D E
Sbjct: 496 KIVIMTDADVDGAHIRTLLMTFFYRYMRQLIEAGYVFVAQPPLYRVRKGKHDSYCYSDNE 555
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ + + + +IQR+KGLGEM P QLWETT++P+ R + Q+ +EDA EA+ FS L
Sbjct: 556 LEELLNRIGHDRV-NIQRYKGLGEMNPEQLWETTMDPDTRTMLQVTLEDAIEADATFSML 614
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG RV+ R++ IQ NA + NLD
Sbjct: 615 MGDRVEPRRDFIQENAKYVRNLD 637
>gi|385799929|ref|YP_005836333.1| DNA gyrase subunit B [Halanaerobium praevalens DSM 2228]
gi|309389293|gb|ADO77173.1| DNA gyrase subunit B [Halanaerobium praevalens DSM 2228]
Length = 638
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/500 (47%), Positives = 344/500 (68%), Gaps = 11/500 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y Q Y +G PV L + +R GT IRF PD ++FT A +F +A R++E A
Sbjct: 144 KYQQHYKKGAPVDKLK----KIGKTERSGTIIRFKPDSEIFT-AREFKFENLAHRLQESA 198
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
+LN +LT++LR D E+ E+ + GG++ +V++LN D+ ++ D++ F D
Sbjct: 199 YLNKELTLSLR--DERGEEVVEKEFQYDGGIKAFVEFLNKDRNIINNDIIYFESKPDDYE 256
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q+ +D Y++ + YAN+I TIDGG H+ G K +LTR +N+ K + + K SL
Sbjct: 257 VEIAVQY-NDGYNERIFSYANNINTIDGGYHLTGFKTALTRAVNNFAKNNNKLPAKISSL 315
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
+G+ VREG+T +I+V++P P+FEGQTKT+LGN E+R +V+ V +YL+ Y + +PD+
Sbjct: 316 NGKDVREGITAVINVKLPEPQFEGQTKTKLGNSEIRSIVESEVYQYLSLYFDTNPDLAKK 375
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K++ A++A A+K+AR+L ++K+ L S+SLPGKLADCSS EESE+FIVEGDSAGG
Sbjct: 376 IIDKAVQAVRARKASKKARELTKRKTALSSNSLPGKLADCSSKKSEESELFIVEGDSAGG 435
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGR+R+FQAILPL+GKILNVER + N E+ +I ALG G+ GEDF E LRY
Sbjct: 436 SAKQGRERKFQAILPLKGKILNVERARLDKILNNNEVAAIITALGAGI-GEDFNLEKLRY 494
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKI+I+TDADVDGAHI TL+LT FYRY L + G IY+ PPLYKV + K+ Y Y D
Sbjct: 495 HKIVIMTDADVDGAHIATLILTLFYRYMPELIENGHIYLAKPPLYKVTKRKKSHYLYSDQ 554
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L+ + N+ +S+QR+KGLGEM P QLW TT++P+ R+L+++ I+D EA+ +F+
Sbjct: 555 ALETFRKE-NENSSFSLQRYKGLGEMNPEQLWATTMDPQNRVLQKVEIDDKIEADDIFTR 613
Query: 481 LMGARVDTRKELIQNAANLV 500
LMG+ RKE I N A L
Sbjct: 614 LMGSNASLRKEFIFNNAELA 633
>gi|75761791|ref|ZP_00741726.1| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|74490724|gb|EAO54005.1| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis
ATCC 35646]
Length = 645
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 151 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 206
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 207 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 262 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 321 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 381 KIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 441 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 500 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 559
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 560 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 619
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 620 ILMGDKVEPRRNFIQENAKYVKNLD 644
>gi|164510805|emb|CAK18885.1| topoisomerase II subunit B [Staphylococcus pseudintermedius]
Length = 611
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 245/502 (48%), Positives = 331/502 (65%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+HQ Y +G P L V D+ GT IRF D +F +++ T+ RIRELAF
Sbjct: 116 HHQAYHKGVPAFDLK----QVGDTDQTGTVIRFKADGTIFQETTVYNYETLQKRIRELAF 171
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L E D E + + Y + GG++ YV+ +N +K+PLHD + + D I +
Sbjct: 172 LNKGIRITLTDE-RDEENVREDSYHYEGGIKSYVELINENKEPLHDEPIYVHQTRDDIEV 230
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S ++ +L YAN+I T +GGTH +G K +LTR LN+ G +SK +K+ LS
Sbjct: 231 EIALQYNS-GFATNLLTYANNIHTYEGGTHEDGFKRALTRVLNNYGTQSKLIKEDKDRLS 289
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR++VD+ E +L HP V I
Sbjct: 290 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRVFSELFERFLYEHPQVARII 349
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS P ESEIF+VEGDSAGGS
Sbjct: 350 VEKGIMASRARIAAKKAREVTRRKSALDISSLPGKLADCSSKDPSESEIFLVEGDSAGGS 409
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ ++ A G G+ GE F RYH
Sbjct: 410 TKSGRDSRTQAILPLRGKILNVEKARLDKILNNNEIRQMVTAFGTGIGGE-FDISKARYH 468
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 469 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 528
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K +SI R+KGLGEM QLWETT+NPE R + Q+ ++DA EA+ F L
Sbjct: 529 LDKLKEKLNPTPKWSIARYKGLGEMNADQLWETTMNPENRAMLQVTLDDAIEADQTFEML 588
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 589 MGDVVENRRQFIEDNAVYANLD 610
>gi|20090442|ref|NP_616517.1| DNA topoisomerase subunit B [Methanosarcina acetivorans C2A]
gi|19915457|gb|AAM04997.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Methanosarcina
acetivorans C2A]
Length = 634
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 254/504 (50%), Positives = 344/504 (68%), Gaps = 13/504 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y Q+Y RGKP V + + GT+ F PD ++F T F ++ ++ R+RELA
Sbjct: 141 KYFQRYIRGKP----EAEVQETGTSEITGTKTTFKPDARIFETT-DFQYDILSNRLRELA 195
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
FLN LTI L K+ PE Q + ++GG+ E+V++LN K+PLH+ + F + D +
Sbjct: 196 FLNRGLTINL-KDLRSPE-GQAETFIYSGGIVEFVEYLNKKKQPLHEKPIYFERQRDDMV 253
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q+ +++Y++ + +AN+I T +GGTHI G K +LTR N K +K K+ D L
Sbjct: 254 VEIAMQY-TNSYTENVYSFANNINTHEGGTHIIGFKTALTRVANDYIKANKLSKE-DAKL 311
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
+G+ VREGLT IISV++ P+FEGQTKTRLGN EV+ +VD V + L EY E +P V +
Sbjct: 312 TGDDVREGLTAIISVKLMEPQFEGQTKTRLGNSEVKGIVDSLVTDGLAEYFEENPKVANV 371
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
IL K+L A KA AAK+AR+L R+KS L S+LPGKLADCS P EI+IVEG+SAGG
Sbjct: 372 ILEKALLAQKAREAAKKARELTRRKSALEVSTLPGKLADCSEKDPSVCEIYIVEGNSAGG 431
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILPLRGKILNVE+ A + KN E+ +LI ALG GV EDF E+ RY
Sbjct: 432 SAKQGRDRGFQAILPLRGKILNVEKSRLAKILKNNEVVSLITALGTGV-SEDFALESARY 490
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK+I++TDADVDGAHIRTLLLT F+RY + L D G +Y+ PPLY++++GK Y + D
Sbjct: 491 HKVILMTDADVDGAHIRTLLLTLFFRYMRPLIDAGYVYIAQPPLYRIKKGKSEYYIHSDR 550
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+ K L +IQR+KGLGEM P QLWETT+NPE R L Q+ +EDA A+ +F
Sbjct: 551 ELEVKKKELGEKGL-AIQRYKGLGEMNPEQLWETTMNPESRTLLQVTLEDALRADEIFRV 609
Query: 481 LMGARVDTRKELIQ-NAANLVNLD 503
LMG V+ R+ I+ +A +V+LD
Sbjct: 610 LMGDEVEPRRNFIETHAKEVVDLD 633
>gi|423451258|ref|ZP_17428111.1| DNA gyrase subunit B [Bacillus cereus BAG5X1-1]
gi|423471658|ref|ZP_17448402.1| DNA gyrase subunit B [Bacillus cereus BAG6O-2]
gi|423520670|ref|ZP_17497143.1| DNA gyrase subunit B [Bacillus cereus HuA4-10]
gi|401146266|gb|EJQ53782.1| DNA gyrase subunit B [Bacillus cereus BAG5X1-1]
gi|401179767|gb|EJQ86930.1| DNA gyrase subunit B [Bacillus cereus HuA4-10]
gi|402431469|gb|EJV63537.1| DNA gyrase subunit B [Bacillus cereus BAG6O-2]
Length = 642
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L + DR GT RF PD ++FT +++ +T+A R+RELAF
Sbjct: 148 HYQKYERGIPAADLKV----IGETDRTGTITRFKPDAEIFTETTEYEFDTLATRMRELAF 203
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 204 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 259 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 318 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 378 KIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 438 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 497 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNN 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 557 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 616
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 617 ILMGDKVEPRRNFIQENAKYVKNLD 641
>gi|423416596|ref|ZP_17393685.1| DNA gyrase subunit B [Bacillus cereus BAG3X2-1]
gi|401109980|gb|EJQ17896.1| DNA gyrase subunit B [Bacillus cereus BAG3X2-1]
Length = 642
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 148 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 203
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 204 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 259 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 318 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 378 KIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 438 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFAIEKAR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 497 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 557 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 616
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 617 ILMGDKVEPRRNFIQENAKYVKNLD 641
>gi|334338619|ref|YP_004543599.1| DNA gyrase subunit B [Desulfotomaculum ruminis DSM 2154]
gi|334089973|gb|AEG58313.1| DNA gyrase, B subunit [Desulfotomaculum ruminis DSM 2154]
Length = 639
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/503 (50%), Positives = 345/503 (68%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+QKYSRG PVT L + GT+I F PD+++F + F TI+ R+RELA+
Sbjct: 146 YYQKYSRGIPVTELKI----IGKSKSTGTKITFKPDEEIFEELV-FSLETISQRMRELAY 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I LR E + E Q +Y GG++++V+ LN +K+ LH + + + +++
Sbjct: 201 LNKGIKIILRDERKETENEQVFQY--EGGIQDFVKHLNRNKQVLHAKPIYLSGEKEYVSV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+YS+TML YAN+I T +GGTH G K +LTR +N G+ +K+ D +L
Sbjct: 259 EIAMQY-NDSYSETMLSYANNIHTTEGGTHEVGFKTALTRIINDYGRTHNILKNNDPNLI 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REG T +ISV+VP P+FEGQTKT+LGN EVR +VD E L+ YLE +P V I
Sbjct: 318 GEDIREGATIVISVKVPEPQFEGQTKTKLGNSEVRGIVDSIFSEALSTYLEENPSVAKKI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K ++A +A AA++AR+L R+KS L + SLPGKLADCS P E+++VEGDSAGGS
Sbjct: 378 IEKGVTASRAREAARKARELTRRKSALETMSLPGKLADCSEKDPSLCELYLVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILNVE+ + NEEI+ +I ALG G+ GEDF RYH
Sbjct: 438 AKQGRDRRFQAILPLRGKILNVEKARMDKILANEEIRAMITALGCGI-GEDFDISKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDG+HIRTLL+TFFYR+ + L + G +YV PPLY+ +GK Y Y D E
Sbjct: 497 KIVIMTDADVDGSHIRTLLMTFFYRHMRELIEAGYLYVAQPPLYRARKGKHDSYLYSDEE 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ + + +IQR+KGLGEM P QLWETT++P+ R + Q+ +EDA EA+ FS L
Sbjct: 557 LEQLLKRIGYDNV-NIQRYKGLGEMNPEQLWETTMDPDTRTMLQVTLEDALEADATFSML 615
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG RV+ RK+ IQ A V NLD
Sbjct: 616 MGDRVEPRKDFIQENARYVRNLD 638
>gi|228995401|ref|ZP_04155073.1| DNA gyrase subunit B [Bacillus mycoides Rock3-17]
gi|229003015|ref|ZP_04160874.1| DNA gyrase subunit B [Bacillus mycoides Rock1-4]
gi|228758243|gb|EEM07429.1| DNA gyrase subunit B [Bacillus mycoides Rock1-4]
gi|228764354|gb|EEM13229.1| DNA gyrase subunit B [Bacillus mycoides Rock3-17]
Length = 640
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 245/503 (48%), Positives = 343/503 (68%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L + D GT RF PD ++F ++D +T+A R+RELAF
Sbjct: 146 HYQKYERGIPAADLKV----IGETDHTGTITRFKPDPEIFKETTEYDFDTLATRMRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + + + + E Q E+ + GG++ YV+ LN K+P+H+ V DGI +
Sbjct: 202 LNRNIKLII---EDKRENKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGIQV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +L+
Sbjct: 259 EVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLT 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V I
Sbjct: 318 GEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAGGS
Sbjct: 378 VDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISEIYIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E RYH
Sbjct: 438 AKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D E
Sbjct: 497 KVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNDKE 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+K+ + P++ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F L
Sbjct: 557 LEKILAELPAHPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEIL 616
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ IQ NA + NLD
Sbjct: 617 MGDKVEPRRNFIQENAKYVKNLD 639
>gi|228911333|ref|ZP_04075137.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 200]
gi|423362664|ref|ZP_17340164.1| DNA gyrase subunit B [Bacillus cereus VD022]
gi|423565616|ref|ZP_17541891.1| DNA gyrase subunit B [Bacillus cereus MSX-A1]
gi|228848351|gb|EEM93201.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 200]
gi|401076938|gb|EJP85283.1| DNA gyrase subunit B [Bacillus cereus VD022]
gi|401193298|gb|EJR00304.1| DNA gyrase subunit B [Bacillus cereus MSX-A1]
Length = 642
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 148 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 203
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 204 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 259 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 318 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 378 KIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 438 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 497 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 557 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 616
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 617 ILMGDKVEPRRNFIQENAKYVKNLD 641
>gi|229065153|ref|ZP_04200446.1| DNA gyrase subunit B [Bacillus cereus AH603]
gi|228716182|gb|EEL67901.1| DNA gyrase subunit B [Bacillus cereus AH603]
Length = 640
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 246/503 (48%), Positives = 344/503 (68%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L + DR GT RF PD ++FT +++ +T+A R+RELAF
Sbjct: 146 HYQKYERGVPAADLKV----IGETDRTGTITRFKPDSEIFTETTEYEFDTLATRMRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + + + + E Q E+ + GG++ YV+ LN K+P+H+ V DGI +
Sbjct: 202 LNRNIKLII---EDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGIQV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +L+
Sbjct: 259 EVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLT 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V I
Sbjct: 318 GEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAGGS
Sbjct: 378 IDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E RYH
Sbjct: 438 AKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFAIEKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++ E
Sbjct: 497 KVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNNKE 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F L
Sbjct: 557 LEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEIL 616
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ IQ NA + NLD
Sbjct: 617 MGDKVEPRRNFIQENAKYVKNLD 639
>gi|218895146|ref|YP_002443557.1| DNA gyrase subunit B [Bacillus cereus G9842]
gi|228905437|ref|ZP_04069392.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 4222]
gi|228968646|ref|ZP_04129629.1| DNA gyrase subunit B [Bacillus thuringiensis serovar sotto str.
T04001]
gi|402562898|ref|YP_006605622.1| DNA gyrase subunit B [Bacillus thuringiensis HD-771]
gi|434378653|ref|YP_006613297.1| DNA gyrase subunit B [Bacillus thuringiensis HD-789]
gi|218542098|gb|ACK94492.1| DNA gyrase, B subunit [Bacillus cereus G9842]
gi|228791075|gb|EEM38693.1| DNA gyrase subunit B [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228854257|gb|EEM98960.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 4222]
gi|401791550|gb|AFQ17589.1| DNA gyrase subunit B [Bacillus thuringiensis HD-771]
gi|401877210|gb|AFQ29377.1| DNA gyrase subunit B [Bacillus thuringiensis HD-789]
Length = 640
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>gi|225862062|ref|YP_002747440.1| DNA gyrase, B subunit [Bacillus cereus 03BB102]
gi|225788933|gb|ACO29150.1| DNA gyrase, B subunit [Bacillus cereus 03BB102]
Length = 640
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F I ++ +T+A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETIVYEFDTLATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNE 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>gi|145578015|gb|ABP82726.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar ostriniae]
Length = 632
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKLGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|390454457|ref|ZP_10239985.1| DNA gyrase subunit B [Paenibacillus peoriae KCTC 3763]
Length = 639
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 248/506 (49%), Positives = 346/506 (68%), Gaps = 18/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG P V + D GT+ F+PD+Q+FT +D++T+ RIRELAF
Sbjct: 146 YEQEYHRGVP----QYDVRVIGDTDETGTQTTFYPDEQIFTETTVYDYDTLQTRIRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I+L +D + + + GG+ EYVQ+LN ++ LH+ V G R D
Sbjct: 202 LNKGIAISL----TDERTGASDTFHYEGGISEYVQFLNQQREALHEQPIYVEGSR---DM 254
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++ALQ+ +D+Y++ + +AN+I T +GGTH G K++LTR +N +K+ +KD +
Sbjct: 255 IQVEVALQY-NDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYARKNGMIKDSNA 313
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+G+ VREGLT IISV++P P+FEGQTKT+LGN EVR +V+ E L E+LE +P V
Sbjct: 314 NLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESLFAEKLQEFLEENPSVS 373
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
++ KSL A +A AA++AR+L R+KS L SSLPGKLADCSS SE++IVEGDSA
Sbjct: 374 RRVVDKSLQAARAREAARKARELTRRKSALEISSLPGKLADCSSKDASISELYIVEGDSA 433
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILP+RGKILNVE+ + ++EI++++ A+G G+ G+DF
Sbjct: 434 GGSAKQGRDRHFQAILPIRGKILNVEKARLDRILSSDEIRSMVTAMGTGI-GDDFDISKA 492
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHK+II+TDADVDGAHIRTLLLTFFYRY + + D G +Y+ PPL+KVER K ++Y
Sbjct: 493 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRKILDAGYVYIAQPPLFKVERNKVIRYANS 552
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+ E ++ F NA Y++QR+KGLGEM QLWETT++PE R + Q+ I DA A+ +F
Sbjct: 553 EVERDEIIREFGENAKYNVQRYKGLGEMNAAQLWETTMDPESRTMLQVTINDAMLADTLF 612
Query: 479 SSLMGARVDTRKELIQNAANLV-NLD 503
++LMG V+ R++ IQ A V NLD
Sbjct: 613 NTLMGDNVEPRRDFIQEHAKYVKNLD 638
>gi|423556993|ref|ZP_17533296.1| DNA gyrase subunit B [Bacillus cereus MC67]
gi|401193768|gb|EJR00770.1| DNA gyrase subunit B [Bacillus cereus MC67]
Length = 642
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L + DR GT RF PD ++FT +++ +T+A R+RELAF
Sbjct: 148 HYQKYERGIPAADLKV----IGETDRTGTITRFKPDAEIFTETTEYEFDTLATRMRELAF 203
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 204 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 259 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 318 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 378 KIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 438 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 497 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNN 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 557 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 616
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 617 ILMGDKVEPRRNFIQENAKYVKNLD 641
>gi|311070653|ref|YP_003975576.1| DNA gyrase subunit B [Bacillus atrophaeus 1942]
gi|419820961|ref|ZP_14344565.1| DNA gyrase subunit B [Bacillus atrophaeus C89]
gi|310871170|gb|ADP34645.1| DNA gyrase subunit B [Bacillus atrophaeus 1942]
gi|388474872|gb|EIM11591.1| DNA gyrase subunit B [Bacillus atrophaeus C89]
Length = 638
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 247/503 (49%), Positives = 342/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q Y RG P+ + + D GT F PD ++FT +D++ ++ R+RELAF
Sbjct: 143 HYQAYERGVPMADVEV----IGETDTTGTITHFVPDPEIFTETTVYDYDLLSSRVRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED EK Q NEY + GG++ YV++LN K+ +H+ + DGIT+
Sbjct: 199 LTKGVKITI--EDKREEKEQKNEYCYEGGIKSYVEYLNRSKEVVHEEPIYIEGTKDGITV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + +AN+I T +GGTH G K LTR +N +K K+ D +LS
Sbjct: 257 EVALQY-NDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKKGIFKESDPNLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D E L +L +PD +
Sbjct: 316 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDALFSEALETFLFENPDSARKV 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 376 IDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 436 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPLYKV++GK+V+Y Y+D +
Sbjct: 495 KVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYIYIAQPPLYKVQQGKRVEYAYNDKQ 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++V S+ P +QR+KGLGEM QLWETT++P+ R L Q+ +EDA +A+ F L
Sbjct: 555 LEEVLSTLPQTPKPGLQRYKGLGEMNATQLWETTMDPDTRTLLQVTLEDAMDADETFEML 614
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 615 MGDKVEPRRNFIEANARYVKNLD 637
>gi|145577983|gb|ABP82710.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar sotto]
Length = 632
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIARPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|145577969|gb|ABP82703.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
mycoides]
Length = 632
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 245/503 (48%), Positives = 342/503 (67%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L + D GT RF PD ++F ++D +T+A R+RELAF
Sbjct: 139 HYQKYERGIPAADLKV----IGETDHTGTITRFKPDPEIFKETTEYDFDTLATRMRELAF 194
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + + + + E Q E+ + GG++ YV+ LN K P+H+ V DGI +
Sbjct: 195 LNRNIKLII---EDKRENKQKKEFHYEGGIKSYVEHLNRSKAPIHEEPVYVEGSKDGIQV 251
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +L+
Sbjct: 252 EVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLT 310
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V I
Sbjct: 311 GEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKI 370
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAGGS
Sbjct: 371 VDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISEIYIVEGDSAGGS 430
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E RYH
Sbjct: 431 AKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKARYH 489
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D E
Sbjct: 490 KVIIITDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNDKE 549
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+K+ + P++ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F L
Sbjct: 550 LEKILAELPAHPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEIL 609
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ IQ NA + NLD
Sbjct: 610 MGDKVEPRRNFIQENAKYVKNLD 632
>gi|403669915|ref|ZP_10935091.1| DNA gyrase subunit B [Kurthia sp. JC8E]
Length = 639
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 235/499 (47%), Positives = 338/499 (67%), Gaps = 9/499 (1%)
Query: 6 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 65
K+ RG+ V L + D GT RF D ++F ++ + +A R+RELA+LN
Sbjct: 148 KFERGQTVQELKV----IGDTDHNGTTTRFKADPEIFKETTVYEFDILAHRVRELAYLNR 203
Query: 66 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLAL 125
+ I++ E E+ ++Y + GG++ YV+ +N K+P+H+ + + + DGI+I++A+
Sbjct: 204 GIRISIIDEREGQERR--SDYHYEGGIKSYVEHINEKKEPIHEAIDLKGEKDGISIEIAM 261
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
Q+ S ++ + +AN+I T +GGTH G K +LTR +N +K+ +K D +LSGE V
Sbjct: 262 QYNS-GFATNIFSFANNINTYEGGTHESGFKTALTRVINDYARKNSLLKSADANLSGEDV 320
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 245
REGL I+S++ P+P+FEGQTKT+LGN EV + + E+ +L +P V +I+ K
Sbjct: 321 REGLVAIVSIKHPDPQFEGQTKTKLGNSEVSTITNSLFSEHFERFLLENPTVARTIVDKG 380
Query: 246 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 305
L A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEE EI+IVEGDSAGGSAK G
Sbjct: 381 LIASRARVAAKKAREMTRRKSALEVSSLPGKLADCSSRHPEECEIYIVEGDSAGGSAKSG 440
Query: 306 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 365
RDR FQAILPLRGKILNVE+ + N EI+ +I A+G G+ GE+F E RYHKI+I
Sbjct: 441 RDRHFQAILPLRGKILNVEKARLDRILSNAEIRAMITAIGTGI-GEEFNLEKARYHKIVI 499
Query: 366 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 425
+TDADVDGAHIRTLLLTFF+R+ + L + G +Y+ PPLY+V++GK ++YCY DAEL+++
Sbjct: 500 MTDADVDGAHIRTLLLTFFFRFMRPLIEAGYVYIAQPPLYQVKQGKHLEYCYSDAELQEI 559
Query: 426 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 485
S +QR+KGLGEM QLW+TT++PE R+L Q+ ++DA EA+ F LMG
Sbjct: 560 LSGLSQQPKPMVQRYKGLGEMNADQLWDTTMDPEHRVLLQVELDDALEADRAFEDLMGDD 619
Query: 486 VDTRKELI-QNAANLVNLD 503
V+ R++ I +NA + NLD
Sbjct: 620 VEPRRKFIHENAVYVENLD 638
>gi|253681222|ref|ZP_04862020.1| DNA gyrase, B subunit [Clostridium botulinum D str. 1873]
gi|253562460|gb|EES91911.1| DNA gyrase, B subunit [Clostridium botulinum D str. 1873]
Length = 636
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 251/504 (49%), Positives = 359/504 (71%), Gaps = 13/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y +GK + L + D +GT + F PD ++F +QFD++T+A R+RELAF
Sbjct: 142 WMQEYKKGKVASELEI----IGDSDEKGTLVYFEPDDEIFE-EVQFDYDTLAHRLRELAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I L E + EK Q E+ + GG++ +V +LN +K+ LH D + + D +
Sbjct: 197 LNKGIRITLIDE-REEEKKQ--EFHYEGGIKSFVSYLNRNKQTLHEDPIYVEGNKDDYLV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D Y+D + +AN+I TI+GGTH+ G K++LTR LN ++ +K+ D +LS
Sbjct: 254 EVALQY-NDTYNDNIFAFANNIDTIEGGTHLAGFKSALTRALNDYARRYGYLKEADKNLS 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ REGLT +ISV++ +P+FEGQTKT+LGN EVR +VD V E ++E+LE +P+ ++
Sbjct: 313 GDDTREGLTAVISVKLTDPQFEGQTKTKLGNTEVRGIVDSIVFERVSEFLEENPNTAKTV 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KSL+A +A AAK+AR+L R+KSVL S++LPGKLADCSS P E EI+IVEGDSAGGS
Sbjct: 373 IEKSLTAARAREAAKKARELTRRKSVLESTALPGKLADCSSKDPSECEIYIVEGDSAGGS 432
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKI+NVE++ + +E+I+ +I A G G+ G+DF E +RYH
Sbjct: 433 AKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSEQIRAMITAFGAGI-GKDFDIEKIRYH 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDADVDGAHI TLLLTFFYRY + L + G +Y+ PPLY+V++GK ++Y Y D E
Sbjct: 492 RIIIMTDADVDGAHIATLLLTFFYRYMRELVEGGHVYIAQPPLYQVKKGKIIRYSYSDNE 551
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L++V + + IQR+KGLGEM QLW+TT+NPE R L ++ I+DA A+ +F+
Sbjct: 552 LQQVLTEIGGKDKNTEIQRYKGLGEMDATQLWDTTMNPEHRTLVKVTIDDAMRADEIFTI 611
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R+E I +NA +VNLD
Sbjct: 612 LMGDKVEPRREFIEENAKRVVNLD 635
>gi|332980610|ref|YP_004462051.1| DNA gyrase subunit B [Mahella australiensis 50-1 BON]
gi|332698288|gb|AEE95229.1| DNA gyrase subunit B [Mahella australiensis 50-1 BON]
Length = 633
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 251/506 (49%), Positives = 352/506 (69%), Gaps = 20/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGKPVT L + D GT I F PD QVF ++++++T+ R RELAF
Sbjct: 142 YRQRYERGKPVTDLEV----IGDTDETGTTISFKPDYQVFE-ELEYNYDTLRNRFRELAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN ++TI L E D ++ E+ + GG+ +V++LN +K PLH + G R DV
Sbjct: 197 LNKEVTITLIDERDDKKE----EFHYEGGIVSFVEYLNKNKSPLHKEAIYISGMRDDVQ- 251
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+++A+Q+ +D+Y +++ +AN+I T +GGTH+ G ++++T+ +N +K +K +
Sbjct: 252 --VEVAIQY-NDSYVESVYAFANNIETPEGGTHLSGFRSAMTKVINDYARKLNMLKPNEP 308
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
SLSG+ VREGLT IISV++ +P+FEGQTK +LGN EVR +VD V + L+ Y E HP V
Sbjct: 309 SLSGDDVREGLTAIISVKLSDPQFEGQTKEKLGNSEVRGIVDSIVSDGLSTYFEEHPSVT 368
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K++SA +A AA++AR+L R+KS L S S+PGKLADCS P+ EIF+VEGDSA
Sbjct: 369 KIIIEKAISAFRAREAARKARELTRRKSALESVSMPGKLADCSERDPKLCEIFLVEGDSA 428
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRRFQAILPLRGKILNVE+ + NEEI+ +I A G G+ GEDF L
Sbjct: 429 GGSAKQGRDRRFQAILPLRGKILNVEKTRLDRILSNEEIKAMITAFGAGI-GEDFDISKL 487
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RY +II +TDADVDG+HIRTLLLTFFYRY + L + G +Y+ PPLYKVE+GK+ Y Y
Sbjct: 488 RYERIICMTDADVDGSHIRTLLLTFFYRYMRPLLENGNVYIAQPPLYKVEKGKKEYYIYS 547
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D EL+++ + + + ++QR+KGLGEM PVQLW+TT++P +R + ++ IEDA A+ +F
Sbjct: 548 DRELEQLLTRIGRDGI-TVQRYKGLGEMDPVQLWDTTMDPAKRTMLKVSIEDAIAADEIF 606
Query: 479 SSLMGARVDTRKELIQNAANLV-NLD 503
+ LMG V+ R+E I + A+LV NLD
Sbjct: 607 TILMGDNVEPRREFIASNAHLVKNLD 632
>gi|383320651|ref|YP_005381492.1| DNA gyrase subunit B [Methanocella conradii HZ254]
gi|379322021|gb|AFD00974.1| DNA gyrase subunit B [Methanocella conradii HZ254]
Length = 635
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 248/503 (49%), Positives = 343/503 (68%), Gaps = 15/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y RGKP T V + + GTR+ F PD +F T +F ++ +A R+RELAF
Sbjct: 145 YVQDYVRGKP----TDEVHEIGTAIGTGTRVTFKPDPTIFETT-EFKYDILANRLRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I +D + + GG+ ++V +LN K PLHD V+ F K D +
Sbjct: 200 LNKGIKITF----TDARSGVSEVFHYEGGIVQFVHYLNEGKTPLHDKVIYFEKQKDTTNV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y++ +L +AN+I T +GGTH+ G +++LTR+ N KK+ +K D+ LS
Sbjct: 256 EIAMQY-NDGYNEIVLAFANNINTTEGGTHLSGFRSALTRSFNDYAKKNNLLKG-DMVLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IISV++ NP+FEGQTKT+LGN EV+ +V+ V E L +YLE +P I
Sbjct: 314 GDDVREGLTAIISVKLTNPQFEGQTKTKLGNSEVQGIVNSLVGEGLDDYLEENPADARKI 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ A A AA++AR+L R+KS L SS+LPGKLADCS PE+ E+++VEGDSAGGS
Sbjct: 374 IEKAIQAFHAREAARKARELTRRKSALESSTLPGKLADCSEKDPEKCELYLVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R +QAILPLRGKILNVE+ + ++EEI+ LI ALG V G++F RYH
Sbjct: 434 AKQGRNRMYQAILPLRGKILNVEKARLSKALQSEEIKALITALGTSV-GDEFDISKARYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KII++TDADVDGAHIRTLLLTFFYRY K L + G +Y+ PPL+K+++GK+ +Y Y + E
Sbjct: 493 KIILMTDADVDGAHIRTLLLTFFYRYMKPLVEAGYVYIAQPPLFKIKKGKEERYVYSEKE 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + Y+IQR+KGLGEM P QLW TT++PE R + ++ +EDAAEA+ +FS L
Sbjct: 553 LNAALDEM-GRSNYTIQRYKGLGEMNPEQLWSTTMDPETRTVLKVTLEDAAEADHIFSVL 611
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ RK I+ A LV NLD
Sbjct: 612 MGDKVEPRKAFIEKNAKLVRNLD 634
>gi|229035151|ref|ZP_04189097.1| DNA gyrase subunit B [Bacillus cereus AH1271]
gi|228728217|gb|EEL79247.1| DNA gyrase subunit B [Bacillus cereus AH1271]
Length = 640
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 247/503 (49%), Positives = 344/503 (68%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F I ++ +T+A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETIVYEFDTLATRMRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + + + + E Q E+ + GG++ YV+ LN K+P+H+ V DGI +
Sbjct: 202 LNRNIKLII---EDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +L+
Sbjct: 259 EVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLT 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V I
Sbjct: 318 GEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAGGS
Sbjct: 378 IDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E RYH
Sbjct: 438 AKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D E
Sbjct: 497 KVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNDKE 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F L
Sbjct: 557 LEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEIL 616
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ IQ NA + NLD
Sbjct: 617 MGDKVEPRRNFIQENAKYVKNLD 639
>gi|229100795|ref|ZP_04231614.1| DNA gyrase subunit B [Bacillus cereus Rock3-28]
gi|228682624|gb|EEL36682.1| DNA gyrase subunit B [Bacillus cereus Rock3-28]
Length = 550
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 56 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 111
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 112 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 166
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 167 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 225
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 226 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 285
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 286 KVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 345
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 346 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 404
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 405 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 464
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 465 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 524
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 525 ILMGDKVEPRRNFIQENAKYVKNLD 549
>gi|30018283|ref|NP_829914.1| DNA gyrase subunit B [Bacillus cereus ATCC 14579]
gi|228955743|ref|ZP_04117738.1| DNA gyrase subunit B [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|365162547|ref|ZP_09358675.1| DNA gyrase subunit B [Bacillus sp. 7_6_55CFAA_CT2]
gi|423410764|ref|ZP_17387884.1| DNA gyrase subunit B [Bacillus cereus BAG3O-2]
gi|423427579|ref|ZP_17404610.1| DNA gyrase subunit B [Bacillus cereus BAG3X2-2]
gi|423433451|ref|ZP_17410455.1| DNA gyrase subunit B [Bacillus cereus BAG4O-1]
gi|423438891|ref|ZP_17415872.1| DNA gyrase subunit B [Bacillus cereus BAG4X12-1]
gi|423506618|ref|ZP_17483207.1| DNA gyrase subunit B [Bacillus cereus HD73]
gi|423589310|ref|ZP_17565396.1| DNA gyrase subunit B [Bacillus cereus VD045]
gi|423632808|ref|ZP_17608553.1| DNA gyrase subunit B [Bacillus cereus VD154]
gi|423644650|ref|ZP_17620267.1| DNA gyrase subunit B [Bacillus cereus VD166]
gi|423651331|ref|ZP_17626901.1| DNA gyrase subunit B [Bacillus cereus VD169]
gi|423658405|ref|ZP_17633704.1| DNA gyrase subunit B [Bacillus cereus VD200]
gi|449086675|ref|YP_007419116.1| DNA gyrase subunit B [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|29893823|gb|AAP07115.1| DNA gyrase subunit B [Bacillus cereus ATCC 14579]
gi|228803971|gb|EEM50595.1| DNA gyrase subunit B [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|363618080|gb|EHL69436.1| DNA gyrase subunit B [Bacillus sp. 7_6_55CFAA_CT2]
gi|401108918|gb|EJQ16848.1| DNA gyrase subunit B [Bacillus cereus BAG3X2-2]
gi|401109496|gb|EJQ17419.1| DNA gyrase subunit B [Bacillus cereus BAG3O-2]
gi|401111869|gb|EJQ19751.1| DNA gyrase subunit B [Bacillus cereus BAG4O-1]
gi|401116018|gb|EJQ23864.1| DNA gyrase subunit B [Bacillus cereus BAG4X12-1]
gi|401224549|gb|EJR31103.1| DNA gyrase subunit B [Bacillus cereus VD045]
gi|401259454|gb|EJR65630.1| DNA gyrase subunit B [Bacillus cereus VD154]
gi|401270282|gb|EJR76305.1| DNA gyrase subunit B [Bacillus cereus VD166]
gi|401279383|gb|EJR85312.1| DNA gyrase subunit B [Bacillus cereus VD169]
gi|401288135|gb|EJR93897.1| DNA gyrase subunit B [Bacillus cereus VD200]
gi|402447283|gb|EJV79139.1| DNA gyrase subunit B [Bacillus cereus HD73]
gi|449020432|gb|AGE75595.1| DNA gyrase subunit B [Bacillus thuringiensis serovar kurstaki str.
HD73]
Length = 642
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 148 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 203
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 204 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 259 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 318 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 378 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 438 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 497 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYND 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 557 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 616
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 617 ILMGDKVEPRRNFIQENAKYVKNLD 641
>gi|228942642|ref|ZP_04105174.1| DNA gyrase subunit B [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228975572|ref|ZP_04136124.1| DNA gyrase subunit B [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228982208|ref|ZP_04142497.1| DNA gyrase subunit B [Bacillus thuringiensis Bt407]
gi|410672382|ref|YP_006924753.1| DNA gyrase subunit B [Bacillus thuringiensis Bt407]
gi|423376715|ref|ZP_17353999.1| DNA gyrase subunit B [Bacillus cereus BAG1O-2]
gi|423386975|ref|ZP_17364230.1| DNA gyrase subunit B [Bacillus cereus BAG1X1-2]
gi|423439810|ref|ZP_17416716.1| DNA gyrase subunit B [Bacillus cereus BAG4X2-1]
gi|423450029|ref|ZP_17426908.1| DNA gyrase subunit B [Bacillus cereus BAG5O-1]
gi|423462881|ref|ZP_17439649.1| DNA gyrase subunit B [Bacillus cereus BAG6O-1]
gi|423526693|ref|ZP_17503138.1| DNA gyrase subunit B [Bacillus cereus HuB1-1]
gi|423532238|ref|ZP_17508656.1| DNA gyrase subunit B [Bacillus cereus HuB2-9]
gi|423542492|ref|ZP_17518882.1| DNA gyrase subunit B [Bacillus cereus HuB4-10]
gi|423548723|ref|ZP_17525081.1| DNA gyrase subunit B [Bacillus cereus HuB5-5]
gi|423618807|ref|ZP_17594640.1| DNA gyrase subunit B [Bacillus cereus VD115]
gi|423621470|ref|ZP_17597248.1| DNA gyrase subunit B [Bacillus cereus VD148]
gi|228777560|gb|EEM25838.1| DNA gyrase subunit B [Bacillus thuringiensis Bt407]
gi|228784182|gb|EEM32209.1| DNA gyrase subunit B [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228817068|gb|EEM63161.1| DNA gyrase subunit B [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|401127327|gb|EJQ35054.1| DNA gyrase subunit B [Bacillus cereus BAG5O-1]
gi|401168739|gb|EJQ75998.1| DNA gyrase subunit B [Bacillus cereus HuB4-10]
gi|401174840|gb|EJQ82047.1| DNA gyrase subunit B [Bacillus cereus HuB5-5]
gi|401252283|gb|EJR58544.1| DNA gyrase subunit B [Bacillus cereus VD115]
gi|401263225|gb|EJR69354.1| DNA gyrase subunit B [Bacillus cereus VD148]
gi|401630827|gb|EJS48625.1| DNA gyrase subunit B [Bacillus cereus BAG1X1-2]
gi|401640960|gb|EJS58685.1| DNA gyrase subunit B [Bacillus cereus BAG1O-2]
gi|402421442|gb|EJV53695.1| DNA gyrase subunit B [Bacillus cereus BAG4X2-1]
gi|402422690|gb|EJV54918.1| DNA gyrase subunit B [Bacillus cereus BAG6O-1]
gi|402454565|gb|EJV86355.1| DNA gyrase subunit B [Bacillus cereus HuB1-1]
gi|402465099|gb|EJV96783.1| DNA gyrase subunit B [Bacillus cereus HuB2-9]
gi|409171511|gb|AFV15816.1| DNA gyrase subunit B [Bacillus thuringiensis Bt407]
Length = 642
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 148 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 203
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 204 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 259 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 318 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 378 KVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 438 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 497 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 557 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 616
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 617 ILMGDKVEPRRNFIQENAKYVKNLD 641
>gi|217967929|ref|YP_002353435.1| DNA gyrase subunit B [Dictyoglomus turgidum DSM 6724]
gi|217337028|gb|ACK42821.1| DNA gyrase, B subunit [Dictyoglomus turgidum DSM 6724]
Length = 635
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 255/505 (50%), Positives = 359/505 (71%), Gaps = 18/505 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q Y +GKPV LT D GT+IRF+PD ++F T +FD++ +A R+RELAF
Sbjct: 144 FYQGYEKGKPVMPLTVR----GETDETGTKIRFYPDSEIFETT-KFDYDIVANRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LNP +TI LR E + + N + + GGL E++++L+ K+ LH+ + R++ + + ++
Sbjct: 199 LNPNVTIELRDERT----GKSNVFKYEGGLLEFIEYLSKGKEILHEPIYMRREEENLIVE 254
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+ +Q+ S Y + +L YAN+I TI+GGTH+ G + +LTR +N+ + K+ + SLSG
Sbjct: 255 IVMQYNS-GYDELILSYANNIHTIEGGTHVTGFRTALTRVVNNFARNWGLWKENE-SLSG 312
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+ VREGLT I+SV+VP+P+FEGQTKT+LGN EVRK V++ V+E LTEY +P+V I+
Sbjct: 313 DDVREGLTAIVSVKVPDPQFEGQTKTKLGNTEVRKFVEKVVEEELTEYFSENPEVGKLII 372
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
SK + A +A AA++AR+LVR+KS+L SS LPGKLADCS PE+ E+FIVEG+SAGGSA
Sbjct: 373 SKIIEAYRARQAARKARELVRRKSLLESSLLPGKLADCSERDPEKCELFIVEGESAGGSA 432
Query: 303 KQGRDRRFQAILPLRGKILNVERKDE-AAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
KQ RDRR+QAILPLRGKILNVE+ + +EEI+ +I +LG G+ G+DF LRYH
Sbjct: 433 KQARDRRYQAILPLRGKILNVEKAQHLTKILSSEEIKAIIASLGTGI-GQDFDLSKLRYH 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYR+ + L + G IY+ PPLY +++GK+ +Y Y + E
Sbjct: 492 KIIIMTDADVDGAHIRTLLLTFFYRHFRPLIEGGYIYIAQPPLYLLKKGKEERYAYSEEE 551
Query: 422 LKKV--KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
+++ + +P N IQR+KGLGEM P QL ETT++P++R+L Q+ IEDA EA +FS
Sbjct: 552 KEEILREWGYPDNVY--IQRYKGLGEMDPEQLRETTMDPQKRILLQVTIEDALEAERLFS 609
Query: 480 SLMGARVDTRKELIQNAANLV-NLD 503
LMG V+ R+ I+ A V NLD
Sbjct: 610 ILMGNNVEERRSFIEQKAKFVRNLD 634
>gi|82749782|ref|YP_415523.1| DNA gyrase subunit B [Staphylococcus aureus RF122]
gi|82655313|emb|CAI79693.1| DNA gyrase subunit B [Staphylococcus aureus RF122]
Length = 644
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 340/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G+DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGI-GDDFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSKLNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|337744370|ref|YP_004638532.1| protein GyrB [Paenibacillus mucilaginosus KNP414]
gi|386720575|ref|YP_006186900.1| DNA gyrase subunit B [Paenibacillus mucilaginosus K02]
gi|336295559|gb|AEI38662.1| GyrB [Paenibacillus mucilaginosus KNP414]
gi|384087699|gb|AFH59135.1| DNA gyrase subunit B [Paenibacillus mucilaginosus K02]
Length = 637
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 246/503 (48%), Positives = 345/503 (68%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y G P + + + GT++ FWPD+++FT ++D +T+ RIRELAF
Sbjct: 144 YQQEYRCGAP----QYDIKEIGESEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN + I L E +D + + + GG+ +V+ LN +++P+H + + D I +
Sbjct: 200 LNKGIEIVLTDERTDISQT----FIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y++ + +AN+I T +GGTH G K++LTR LN +K +K+ D +LS
Sbjct: 256 EVALQY-NDSYTENIYSFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLS 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IISV++P+P+FEGQTKT+LGN EVR +V+ E L E+L+ +P + I
Sbjct: 315 GDDVREGLTAIISVKIPDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKI 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A AA++AR+L R+KS L SSLPGKLADCSS SE++IVEGDSAGGS
Sbjct: 375 VEKGVQAQRAREAARKARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N EI+ +I ALG G+ GEDF RYH
Sbjct: 435 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNAEIRAIITALGTGI-GEDFDISKARYH 493
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFF+RY + L + G +Y+ PPLYK+ER K ++Y Y+D +
Sbjct: 494 KIIIMTDADVDGAHIRTLLLTFFFRYMRKLIEAGFVYIAQPPLYKLERNKTIRYAYNDKQ 553
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
+ + + F A ++QR+KGLGEM P QLWETT++P+ R L Q+ I+DA +A+VVF +L
Sbjct: 554 REAIMAEFGEGAKVNVQRYKGLGEMNPGQLWETTMDPDSRTLLQVSIQDAIDADVVFDTL 613
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG V+ R++ IQ A V NLD
Sbjct: 614 MGDAVEPRRDFIQLHARYVKNLD 636
>gi|229099920|ref|ZP_04230843.1| DNA gyrase subunit B [Bacillus cereus Rock3-29]
gi|229118983|ref|ZP_04248328.1| DNA gyrase subunit B [Bacillus cereus Rock1-3]
gi|384184093|ref|YP_005569989.1| DNA gyrase subunit B [Bacillus thuringiensis serovar chinensis
CT-43]
gi|407707961|ref|YP_006831546.1| hypothetical protein MC28_4725 [Bacillus thuringiensis MC28]
gi|452196386|ref|YP_007476467.1| DNA gyrase subunit B [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
gi|228664508|gb|EEL20004.1| DNA gyrase subunit B [Bacillus cereus Rock1-3]
gi|228683535|gb|EEL37490.1| DNA gyrase subunit B [Bacillus cereus Rock3-29]
gi|326937802|gb|AEA13698.1| DNA gyrase subunit B [Bacillus thuringiensis serovar chinensis
CT-43]
gi|407385646|gb|AFU16147.1| DNA gyrase subunit B [Bacillus thuringiensis MC28]
gi|452101779|gb|AGF98718.1| DNA gyrase subunit B [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
Length = 640
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>gi|229164444|ref|ZP_04292372.1| DNA gyrase subunit B [Bacillus cereus R309803]
gi|228619049|gb|EEK75947.1| DNA gyrase subunit B [Bacillus cereus R309803]
Length = 640
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>gi|229015410|ref|ZP_04172416.1| DNA gyrase subunit B [Bacillus cereus AH1273]
gi|229026934|ref|ZP_04183257.1| DNA gyrase subunit B [Bacillus cereus AH1272]
gi|228734392|gb|EEL85063.1| DNA gyrase subunit B [Bacillus cereus AH1272]
gi|228745889|gb|EEL95885.1| DNA gyrase subunit B [Bacillus cereus AH1273]
Length = 640
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+++ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELERILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>gi|423388220|ref|ZP_17365446.1| DNA gyrase subunit B [Bacillus cereus BAG1X1-3]
gi|401643408|gb|EJS61105.1| DNA gyrase subunit B [Bacillus cereus BAG1X1-3]
Length = 642
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 148 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 203
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 204 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 259 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 318 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 378 KIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 438 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 497 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+++ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 557 KELERILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 616
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 617 ILMGDKVEPRRNFIQENAKYVKNLD 641
>gi|145578023|gb|ABP82730.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar fukuokaensis]
Length = 632
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPALPKPGIQRYKGLGEMSPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|145577971|gb|ABP82704.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
mycoides]
Length = 632
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L + DR GT RF PD ++FT +++ +T A R+RELAF
Sbjct: 139 HYQKYERGIPAADLKV----IGETDRTGTITRFKPDSEIFTETTEYEFDTSATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFAIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNN 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|323342250|ref|ZP_08082482.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|336065250|ref|YP_004560108.1| DNA gyrase subunit B [Erysipelothrix rhusiopathiae str. Fujisawa]
gi|322463362|gb|EFY08556.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|334295196|dbj|BAK31067.1| DNA gyrase, B subunit [Erysipelothrix rhusiopathiae str. Fujisawa]
Length = 639
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 236/504 (46%), Positives = 340/504 (67%), Gaps = 9/504 (1%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
+EY+ ++ G V + V D++GT +RF D +FT +F H+ + R+R++
Sbjct: 143 IEYYLRFEEGGKVA---VPLKEVGKTDKKGTTVRFKADPTIFTETTEFSHDVLRDRLRQI 199
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
AFLN + + + E +PE+ ++ E+ + GL EYVQ++N +K P+H+ +V + +GI
Sbjct: 200 AFLNKGIKLVFQDE-REPEETRHLEFVYEDGLREYVQYMNANKSPIHEEIVYCEGEEEGI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++++Q+ +D ++ + + N+I T +GGTH +G K +LTR +N+ K+ +K D
Sbjct: 259 LVEVSMQY-NDGFTPNIYSFCNNINTHEGGTHEDGFKLALTRVINNYAKEHNLLKKDDDG 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
G+ VREGLT IISV+ P+P++EGQTKT+LGN EVRK+V E L +L HPD
Sbjct: 318 FLGDDVREGLTAIISVKHPDPQYEGQTKTKLGNSEVRKIVSSVFGEQLERFLMEHPDDAK 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K+ A KA +AA++AR+L R+K L SSLPGKLADCS+ P E EI+IVEGDSAG
Sbjct: 378 IIVDKAAIASKARVAARKARELTRRKGALEVSSLPGKLADCSNRNPSECEIYIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRD +FQAILPLRGK++NVE+ ++ N EI+ +I A G GV E + LR
Sbjct: 438 GSAKQGRDSKFQAILPLRGKVINVEKARLHKIFDNNEIRMMITAFGTGVSDE-MDIDKLR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHKIII+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ RG ++ Y Y++
Sbjct: 497 YHKIIIMTDADVDGAHIRTLLLTFFYRFLRPLIENGFVYIAQPPLYKISRGNKIAYAYEE 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL ++K F +++QR+KGLGEM P QLW+TT++PE R L Q+ I+DA EA+V+F
Sbjct: 557 EELDELKVEFGDR--FNVQRYKGLGEMNPEQLWDTTMDPETRTLIQVTIDDAMEADVIFE 614
Query: 480 SLMGARVDTRKELIQNAANLVNLD 503
+LMG V R+E IQ A +LD
Sbjct: 615 TLMGDEVAPRREFIQANAEYADLD 638
>gi|407472538|ref|YP_006786938.1| DNA gyrase subunit B [Clostridium acidurici 9a]
gi|407049046|gb|AFS77091.1| DNA gyrase subunit B [Clostridium acidurici 9a]
Length = 636
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 346/503 (68%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ G P T L + D GT I F PD +F ++F + T+ R+RELAF
Sbjct: 145 HKQRFEIGIPQTELEV----IGDSDETGTTITFMPDATIFD-EVEFKYETLEYRLRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I D N+ E+F+ GG++ +V+++N +K +H DV+ F + + +
Sbjct: 200 LNKGVKIIF----EDKRTNKEQEFFYEGGIKAFVEYMNRNKDSIHSDVIYFEGEREDSVV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+LALQ+ +D YS+ +L +AN+I T +GG+H+ G++++LTR +N + + +K+KD +L+
Sbjct: 256 ELALQYTTD-YSENILAFANNINTHEGGSHLSGLRSALTRVINDYARTNSLLKEKDENLT 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREG+T ++SV++ P+FEGQTKT+LGN E+R +V+ V + L +LE +P I
Sbjct: 315 GDDVREGITAVLSVKLSEPQFEGQTKTKLGNSEMRGIVEGVVYDSLNRFLEENPKEAKII 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A + AA++AR+L R+K+VL SS+LPGKLADCS PE+ EI+IVEG+SAGGS
Sbjct: 375 IDKGIKAARVREAARKARELTRRKNVLESSALPGKLADCSERDPEKCEIYIVEGNSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR QAILPLRGKI+N+E+ + ++EI+N+I A G G+ GEDF +RY
Sbjct: 435 AKQGRDRSTQAILPLRGKIMNIEKARLDKILSSDEIKNMITAFGCGI-GEDFDPNKIRYG 493
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYRY K L + G I++ PPLYKV++GK +Y YDD E
Sbjct: 494 KIVIMTDADVDGAHIRTLLLTFFYRYMKPLIENGNIFIAQPPLYKVKKGKVEKYAYDDRE 553
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ V YS+QR+KGLGEM P QLW+TT+NPE R + Q+ IEDAA A+ +F++L
Sbjct: 554 LEVVLDEIGRTG-YSLQRYKGLGEMNPEQLWDTTMNPETRTMLQVNIEDAAAADDIFTTL 612
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V R+E I +NA N+ NLD
Sbjct: 613 MGDKVKPRREFIEENALNVKNLD 635
>gi|145577973|gb|ABP82705.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
weihenstephanensis]
Length = 632
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L + DR GT RF PD ++FT +++ +T A R+RELAF
Sbjct: 139 HYQKYERGVPAADLKV----IGETDRTGTITRFKPDSEIFTETTEYEFDTSATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFAIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNN 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|148266452|ref|YP_001245395.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus JH9]
gi|150392485|ref|YP_001315160.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus JH1]
gi|418876920|ref|ZP_13431162.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1165]
gi|147739521|gb|ABQ47819.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus JH9]
gi|149944937|gb|ABR50873.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus JH1]
gi|377699237|gb|EHT23584.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1165]
Length = 640
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 339/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 145 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 201 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 260 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 319 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 379 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 439 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 498 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 558 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 617
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 618 MGDVVENRRQFIEDNAVYANLD 639
>gi|229051162|ref|ZP_04194706.1| DNA gyrase subunit B [Bacillus cereus AH676]
gi|228722225|gb|EEL73626.1| DNA gyrase subunit B [Bacillus cereus AH676]
Length = 640
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYND 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>gi|418312245|ref|ZP_12923755.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21334]
gi|365238593|gb|EHM79425.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21334]
Length = 644
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 339/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIKITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNANQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|374321361|ref|YP_005074490.1| DNA gyrase subunit B [Paenibacillus terrae HPL-003]
gi|357200370|gb|AET58267.1| DNA gyrase subunit B [Paenibacillus terrae HPL-003]
Length = 636
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 251/506 (49%), Positives = 343/506 (67%), Gaps = 18/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG P V + D GT+ F+PD Q+FT +D+ T+ RIRELAF
Sbjct: 143 YEQEYHRGVP----QYDVRVIGDTDETGTQTTFYPDDQIFTETTVYDYETLQTRIRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I+L +D + + + GG+ EYVQ+LN ++ LH+ V G R D
Sbjct: 199 LNKGIAISL----TDERTGASDMFHYEGGISEYVQFLNQKREALHEQPIYVEGSR---DM 251
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++ALQ+ +D+Y++ + +AN+I T +GGTH G K++LTR +N +K+ +KD
Sbjct: 252 IQVEVALQY-NDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYARKNGFIKDNTA 310
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+G+ VREGLT IISV++P P+FEGQTKT+LGN EVR +V+ E L E+LE +P V
Sbjct: 311 NLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESLFAEKLQEFLEENPSVS 370
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
++ KSL A +A AA++AR+L R+KS L SSLPGKLADCSS SE++IVEGDSA
Sbjct: 371 RRVVDKSLQAARAREAARKARELTRRKSALEISSLPGKLADCSSKDASISELYIVEGDSA 430
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILP+RGKILNVE+ + ++EI++++ A+G G+ G+DF
Sbjct: 431 GGSAKQGRDRHFQAILPIRGKILNVEKARLDRILSSDEIRSMVTAMGTGI-GDDFDIAKA 489
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHK+II+TDADVDGAHIRTLLLTFFYRY + + D G +Y+ PPL+KVER K V+Y
Sbjct: 490 RYHKVIIMTDADVDGAHIRTLLLTFFYRYLRKIIDAGYVYIAQPPLFKVERNKVVRYANS 549
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+AE + S F NA Y++QR+KGLGEM QLWETT++PE R + Q+ I DA A+ +F
Sbjct: 550 EAERDTIISEFGENAKYNVQRYKGLGEMNATQLWETTMDPESRTMLQVTISDAMLADTMF 609
Query: 479 SSLMGARVDTRKELIQNAANLV-NLD 503
+LMG V+ R++ IQ A V NLD
Sbjct: 610 DTLMGDNVEPRRDFIQEHAKYVKNLD 635
>gi|126179353|ref|YP_001047318.1| DNA gyrase, B subunit [Methanoculleus marisnigri JR1]
gi|125862147|gb|ABN57336.1| DNA gyrase subunit B [Methanoculleus marisnigri JR1]
Length = 656
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 247/486 (50%), Positives = 337/486 (69%), Gaps = 12/486 (2%)
Query: 22 PVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKN 81
P+D + +GTRI F PD+ +F T ++FD++ + R+RELA+LN LTI LR D
Sbjct: 178 PLDYERLRGTRITFQPDRSIFET-VEFDYDVLDHRLRELAYLNSGLTIVLR----DERTG 232
Query: 82 QYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDG---ITIDLALQWCSDAYSDTMLG 138
Y F G+ ++V L K+ LHD + + + D + +++ALQ+ +++YS+T+
Sbjct: 233 DVVTYCFEDGIRQFVAHLGEGKESLHDDIIYFQKRDSESKVEVEVALQY-NNSYSETIYT 291
Query: 139 YANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVP 198
Y NS+ T +GGTH+EG +++LTR +NS ++ +K+ D + GE VREGL C+IS RV
Sbjct: 292 YVNSVNTREGGTHLEGFRSALTRAINSAAHRNNLLKNNDAQVKGEDVREGLACVISTRVA 351
Query: 199 NPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRA 258
NP+FEGQTK RLGN VR +VD V LTEY E HP L +++ K+++A +A AA+ A
Sbjct: 352 NPQFEGQTKMRLGNSNVRGIVDSLVYSSLTEYFEEHPKTLQTVVDKAMAAARAREAARTA 411
Query: 259 RDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRG 318
R+L R+KS L S+ LPGKLADC P +SE++IVEGDSAGGSAKQGRDR+FQAILPLRG
Sbjct: 412 RELARRKSTLESTGLPGKLADCQERDPAKSELYIVEGDSAGGSAKQGRDRKFQAILPLRG 471
Query: 319 KILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRT 378
KILNVE+ E + KN EIQ LI A+G GV G+ F E RYH+II++TDADVDGAHIRT
Sbjct: 472 KILNVEKASEHKILKNAEIQALISAIGTGV-GDSFDAERARYHRIILMTDADVDGAHIRT 530
Query: 379 LLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQ 438
LLLTFFYRY L + G IY+ PPLY+V +G+Q QY Y + E++++ + + + SIQ
Sbjct: 531 LLLTFFYRYMVGLVENGYIYIAQPPLYRVAKGRQEQYVYREEEMREILAEWGEKGV-SIQ 589
Query: 439 RFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAA 497
R+KGLGEM QLW TT++P R+LKQ+ IEDAA AN +F LMG VD R++ I ++A
Sbjct: 590 RYKGLGEMNAGQLWSTTMDPANRILKQVKIEDAAYANEIFEKLMGENVDARRDFIRRHAK 649
Query: 498 NLVNLD 503
+ NLD
Sbjct: 650 EVSNLD 655
>gi|331270701|ref|YP_004397193.1| DNA gyrase subunit B [Clostridium botulinum BKT015925]
gi|329127251|gb|AEB77196.1| DNA gyrase, B subunit [Clostridium botulinum BKT015925]
Length = 635
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/504 (49%), Positives = 357/504 (70%), Gaps = 14/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y +GK + L + + +GT + F PD ++F ++FD++T++ R+RELAF
Sbjct: 142 WMQEYKKGKVASELEV----IGDSEERGTLVYFEPDDEIFE-EVEFDYDTLSHRLRELAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN I L E + E+ E+ + GG++ +V +LN +K+ LH+ + + D +
Sbjct: 197 LNKGTRIILVDEREEKEQ----EFHYEGGIKSFVSYLNRNKQTLHEEPIYVEGNKDDYLV 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D Y+D + +AN+I TI+GGTH+ G K++LTR LN ++ +K+ D +LS
Sbjct: 253 EVALQY-NDTYNDNIFAFANNIDTIEGGTHLAGFKSALTRVLNDYARRYGYLKETDKNLS 311
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ REGLT +ISV++ +P+FEGQTKT+LGN EVR +VD V E ++E+LE +PD ++
Sbjct: 312 GDDTREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDSIVSERVSEFLEENPDTAKTV 371
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KSL+A +A AAK+AR+L R+KSVL S++LPGKLADCSS P E EI+IVEGDSAGGS
Sbjct: 372 IEKSLTAARAREAAKKARELTRRKSVLESTALPGKLADCSSKDPSECEIYIVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKI+NVE++ + +E+I+ +I A G G+ G+DF E +RYH
Sbjct: 432 AKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSEQIRAMITAFGAGI-GKDFDIEKIRYH 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDADVDGAHI TLLLTFFYRY + L + G +Y+ PPLY+V+RGK ++Y Y D E
Sbjct: 491 RIIIMTDADVDGAHIATLLLTFFYRYMRELVEGGHVYIAQPPLYQVKRGKVIRYSYSDNE 550
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
LK+V + + IQR+KGLGEM QLW+TT+NPE R L ++ I+DA A+ VF+
Sbjct: 551 LKQVLTELGGKDKNTEIQRYKGLGEMDATQLWDTTMNPEHRTLVKVTIDDAMRADEVFTI 610
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R+E I +NA +VNLD
Sbjct: 611 LMGDKVEPRREFIEENAKKVVNLD 634
>gi|206970026|ref|ZP_03230979.1| DNA gyrase, B subunit [Bacillus cereus AH1134]
gi|218232402|ref|YP_002364860.1| DNA gyrase subunit B [Bacillus cereus B4264]
gi|228961757|ref|ZP_04123360.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|229072958|ref|ZP_04206154.1| DNA gyrase subunit B [Bacillus cereus F65185]
gi|229112906|ref|ZP_04242437.1| DNA gyrase subunit B [Bacillus cereus Rock1-15]
gi|229130739|ref|ZP_04259692.1| DNA gyrase subunit B [Bacillus cereus BDRD-Cer4]
gi|229153652|ref|ZP_04281828.1| DNA gyrase subunit B [Bacillus cereus m1550]
gi|229181739|ref|ZP_04309062.1| DNA gyrase subunit B [Bacillus cereus 172560W]
gi|229193744|ref|ZP_04320685.1| DNA gyrase subunit B [Bacillus cereus ATCC 10876]
gi|296500843|ref|YP_003662543.1| DNA gyrase subunit B [Bacillus thuringiensis BMB171]
gi|51988024|dbj|BAD44713.1| gyraseB [Bacillus cereus ATCC 14579]
gi|206734603|gb|EDZ51772.1| DNA gyrase, B subunit [Bacillus cereus AH1134]
gi|218160359|gb|ACK60351.1| DNA gyrase, B subunit [Bacillus cereus B4264]
gi|228589769|gb|EEK47647.1| DNA gyrase subunit B [Bacillus cereus ATCC 10876]
gi|228601772|gb|EEK59270.1| DNA gyrase subunit B [Bacillus cereus 172560W]
gi|228629838|gb|EEK86491.1| DNA gyrase subunit B [Bacillus cereus m1550]
gi|228652756|gb|EEL08641.1| DNA gyrase subunit B [Bacillus cereus BDRD-Cer4]
gi|228670585|gb|EEL25898.1| DNA gyrase subunit B [Bacillus cereus Rock1-15]
gi|228710204|gb|EEL62182.1| DNA gyrase subunit B [Bacillus cereus F65185]
gi|228797951|gb|EEM44961.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|296321895|gb|ADH04823.1| DNA gyrase subunit B [Bacillus thuringiensis BMB171]
Length = 640
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYND 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>gi|229176169|ref|ZP_04303661.1| DNA gyrase subunit B [Bacillus cereus MM3]
gi|228607328|gb|EEK64658.1| DNA gyrase subunit B [Bacillus cereus MM3]
Length = 640
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F I ++ +T+A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETIVYEFDTLATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFAIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNE 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>gi|423583663|ref|ZP_17559774.1| DNA gyrase subunit B [Bacillus cereus VD014]
gi|423633659|ref|ZP_17609312.1| DNA gyrase subunit B [Bacillus cereus VD156]
gi|401209723|gb|EJR16482.1| DNA gyrase subunit B [Bacillus cereus VD014]
gi|401282726|gb|EJR88624.1| DNA gyrase subunit B [Bacillus cereus VD156]
Length = 642
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 148 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 203
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 204 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 259 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 318 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 378 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 438 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 497 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYND 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 557 NELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 616
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 617 ILMGDKVEPRRNFIQENAKYVKNLD 641
>gi|57651113|ref|YP_184916.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus COL]
gi|81859679|sp|Q5HJZ1.3|GYRB_STAAC RecName: Full=DNA gyrase subunit B
gi|57285299|gb|AAW37393.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus COL]
Length = 644
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 339/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|145577977|gb|ABP82707.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar higo]
gi|145577979|gb|ABP82708.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar kenyae]
gi|145578009|gb|ABP82723.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar azorensis]
gi|145578021|gb|ABP82729.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar zhaodongensis]
Length = 632
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|307243405|ref|ZP_07525562.1| DNA gyrase, B subunit [Peptostreptococcus stomatis DSM 17678]
gi|306493215|gb|EFM65211.1| DNA gyrase, B subunit [Peptostreptococcus stomatis DSM 17678]
Length = 635
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 248/503 (49%), Positives = 340/503 (67%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG P L V+ SKD GT I F PD +F I+F + T+ R REL+F
Sbjct: 141 YRQEYKRGVPTGKL--EVVSESSKD-SGTSITFMPDASIFD-EIEFKYETLEYRFRELSF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I ED + + + + GGL EY+++LN K P+HD ++ K + TI
Sbjct: 197 LNKVIKIEF--EDKREGQEESKTFHYTGGLVEYIKYLNRTKTPIHDQIIYVDKIANDCTI 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+LALQ+ +DAY++ + +AN+I T +GG H+ G KA+LT+ +N +++ +K+KD +LS
Sbjct: 255 ELALQY-TDAYTENIYSFANNINTHEGGVHLSGFKAALTKCVNDYARRNNILKEKDPNLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT I+SV++P+P+FEGQTKT+LGN +R +VD E + +LE +P V +
Sbjct: 314 GEDIREGLTAIVSVKLPDPQFEGQTKTKLGNTFMRGLVDSIANEEIGAFLEENPSVAKLV 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A AAK+ARDL R+K+ L +SLPGKLADCS +PE+SEIF+VEGDSAGGS
Sbjct: 374 IEKCLRAQRAREAAKKARDLTRRKNALEFTSLPGKLADCSEKSPEKSEIFLVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR QAILPLRGKILNVE+ + +EEI+N+I A G G+ GEDF+ E LRYH
Sbjct: 434 AKSGRDRNIQAILPLRGKILNVEKSRLDKILSSEEIKNMITAFGCGI-GEDFEPEKLRYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFF+RY + L + G +Y PPL+KV++GK+ Y + D E
Sbjct: 493 KIVIMTDADVDGAHIRTLLLTFFFRYMRPLIEGGYVYAAQPPLFKVKKGKKEYYAFSDNE 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + + R+KGLGEM QLWETT++PE R L Q+ I+DA A+ +FS L
Sbjct: 553 LSSLLDEVGRQGA-DVSRYKGLGEMNAEQLWETTMDPESRTLLQVTIDDAIMADEIFSML 611
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V R++ I+ NA + NLD
Sbjct: 612 MGDKVAPRRDFIEANAKYVTNLD 634
>gi|15922995|ref|NP_370529.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu50]
gi|15925710|ref|NP_373243.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus N315]
gi|156978336|ref|YP_001440595.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu3]
gi|253316843|ref|ZP_04840056.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|253730404|ref|ZP_04864569.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|254663939|ref|ZP_05143411.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257793543|ref|ZP_05642522.1| DNA gyrase, B subunit [Staphylococcus aureus A9781]
gi|258411151|ref|ZP_05681430.1| DNA gyrase subunit B [Staphylococcus aureus A9763]
gi|258420945|ref|ZP_05683879.1| DNA gyrase, B subunit [Staphylococcus aureus A9719]
gi|258438584|ref|ZP_05689807.1| hypothetical protein SAKG_01059 [Staphylococcus aureus A9299]
gi|258443960|ref|ZP_05692298.1| hypothetical protein SAJG_01378 [Staphylococcus aureus A8115]
gi|258446224|ref|ZP_05694384.1| DNA gyrase, B subunit [Staphylococcus aureus A6300]
gi|258449117|ref|ZP_05697223.1| DNA gyrase, B subunit [Staphylococcus aureus A6224]
gi|258454405|ref|ZP_05702373.1| DNA gyrase, B subunit [Staphylococcus aureus A5937]
gi|269201695|ref|YP_003280964.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ED98]
gi|282894284|ref|ZP_06302514.1| DNA gyrase, B subunit [Staphylococcus aureus A8117]
gi|282927755|ref|ZP_06335369.1| DNA gyrase, B subunit [Staphylococcus aureus A10102]
gi|295406869|ref|ZP_06816673.1| hypothetical protein SMAG_02042 [Staphylococcus aureus A8819]
gi|296275682|ref|ZP_06858189.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MR1]
gi|297245904|ref|ZP_06929766.1| hypothetical protein SLAG_01998 [Staphylococcus aureus A8796]
gi|384863401|ref|YP_005748760.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|385780303|ref|YP_005756474.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 11819-97]
gi|387149193|ref|YP_005740757.1| DNA gyrase subunit B [Staphylococcus aureus 04-02981]
gi|415693122|ref|ZP_11454976.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus CGS03]
gi|417652015|ref|ZP_12301771.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21172]
gi|417654048|ref|ZP_12303776.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21193]
gi|417796905|ref|ZP_12444107.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21305]
gi|417801536|ref|ZP_12448624.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21318]
gi|417893975|ref|ZP_12537998.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21201]
gi|417900702|ref|ZP_12544581.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21266]
gi|418314813|ref|ZP_12926279.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21340]
gi|418322452|ref|ZP_12933785.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus VCU006]
gi|418425904|ref|ZP_12998981.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS1]
gi|418428781|ref|ZP_13001761.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS2]
gi|418431669|ref|ZP_13004559.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS3a]
gi|418435581|ref|ZP_13007421.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS4]
gi|418438336|ref|ZP_13010107.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS5]
gi|418441285|ref|ZP_13012958.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS6]
gi|418441566|ref|ZP_13013193.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS7]
gi|418447232|ref|ZP_13018689.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS8]
gi|418450330|ref|ZP_13021698.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS9]
gi|418453178|ref|ZP_13024493.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS10]
gi|418456115|ref|ZP_13027361.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS11a]
gi|418458991|ref|ZP_13030176.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS11b]
gi|418567448|ref|ZP_13131812.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21272]
gi|418573938|ref|ZP_13138118.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21333]
gi|418598564|ref|ZP_13162073.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21343]
gi|418640046|ref|ZP_13202282.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-3]
gi|418644043|ref|ZP_13206195.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-55]
gi|418653186|ref|ZP_13215131.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-99]
gi|418661955|ref|ZP_13223515.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-122]
gi|418874096|ref|ZP_13428368.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIGC93]
gi|418879712|ref|ZP_13433935.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1213]
gi|418882673|ref|ZP_13436877.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1769]
gi|418885320|ref|ZP_13439476.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1150]
gi|418893491|ref|ZP_13447596.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1057]
gi|418913293|ref|ZP_13467267.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418918779|ref|ZP_13472728.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIGC348]
gi|418930156|ref|ZP_13484008.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1750]
gi|418989922|ref|ZP_13537586.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1096]
gi|419783663|ref|ZP_14309446.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-M]
gi|421148834|ref|ZP_15608493.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|424769522|ref|ZP_18196748.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CM05]
gi|443636287|ref|ZP_21120402.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21236]
gi|443638069|ref|ZP_21122126.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21196]
gi|54037243|sp|P66937.2|GYRB_STAAN RecName: Full=DNA gyrase subunit B
gi|54041556|sp|P66936.2|GYRB_STAAM RecName: Full=DNA gyrase subunit B
gi|13699922|dbj|BAB41221.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus N315]
gi|14245772|dbj|BAB56167.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu50]
gi|156720471|dbj|BAF76888.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu3]
gi|253725884|gb|EES94613.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257787515|gb|EEV25855.1| DNA gyrase, B subunit [Staphylococcus aureus A9781]
gi|257840036|gb|EEV64501.1| DNA gyrase subunit B [Staphylococcus aureus A9763]
gi|257843135|gb|EEV67550.1| DNA gyrase, B subunit [Staphylococcus aureus A9719]
gi|257848143|gb|EEV72135.1| hypothetical protein SAKG_01059 [Staphylococcus aureus A9299]
gi|257850844|gb|EEV74788.1| hypothetical protein SAJG_01378 [Staphylococcus aureus A8115]
gi|257855050|gb|EEV77993.1| DNA gyrase, B subunit [Staphylococcus aureus A6300]
gi|257857550|gb|EEV80445.1| DNA gyrase, B subunit [Staphylococcus aureus A6224]
gi|257863499|gb|EEV86259.1| DNA gyrase, B subunit [Staphylococcus aureus A5937]
gi|262073985|gb|ACY09958.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ED98]
gi|282590515|gb|EFB95593.1| DNA gyrase, B subunit [Staphylococcus aureus A10102]
gi|282763329|gb|EFC03459.1| DNA gyrase, B subunit [Staphylococcus aureus A8117]
gi|285815732|gb|ADC36219.1| DNA gyrase subunit B [Staphylococcus aureus 04-02981]
gi|294968334|gb|EFG44359.1| hypothetical protein SMAG_02042 [Staphylococcus aureus A8819]
gi|297177269|gb|EFH36522.1| hypothetical protein SLAG_01998 [Staphylococcus aureus A8796]
gi|312828568|emb|CBX33410.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129548|gb|EFT85540.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus CGS03]
gi|329725845|gb|EGG62324.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21172]
gi|329732607|gb|EGG68957.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21193]
gi|334267943|gb|EGL86394.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21305]
gi|334276580|gb|EGL94834.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21318]
gi|341847016|gb|EGS88202.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21266]
gi|341853482|gb|EGS94363.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21201]
gi|364521292|gb|AEW64042.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
11819-97]
gi|365223481|gb|EHM64770.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus VCU006]
gi|365244416|gb|EHM85075.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21340]
gi|371980639|gb|EHO97841.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21333]
gi|371982093|gb|EHO99253.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21272]
gi|374399341|gb|EHQ70482.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21343]
gi|375015446|gb|EHS09101.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-3]
gi|375019491|gb|EHS13044.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-99]
gi|375027023|gb|EHS20400.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-55]
gi|375037444|gb|EHS30478.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-122]
gi|377701338|gb|EHT25671.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1057]
gi|377718582|gb|EHT42754.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1769]
gi|377719156|gb|EHT43327.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1750]
gi|377726373|gb|EHT50485.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1096]
gi|377729262|gb|EHT53358.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1150]
gi|377734873|gb|EHT58910.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1213]
gi|377759336|gb|EHT83217.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377769065|gb|EHT92843.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIGC348]
gi|377773604|gb|EHT97349.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIGC93]
gi|383364751|gb|EID42057.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-M]
gi|387714926|gb|EIK03037.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS1]
gi|387715095|gb|EIK03201.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS3a]
gi|387715280|gb|EIK03383.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS2]
gi|387722714|gb|EIK10500.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS4]
gi|387724428|gb|EIK12085.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS5]
gi|387726669|gb|EIK14217.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS6]
gi|387732608|gb|EIK19823.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS8]
gi|387733965|gb|EIK21123.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS9]
gi|387740837|gb|EIK27760.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS7]
gi|387741252|gb|EIK28109.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS10]
gi|387741729|gb|EIK28562.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS11a]
gi|387742964|gb|EIK29766.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VRS11b]
gi|394330936|gb|EJE57024.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|402348167|gb|EJU83162.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CM05]
gi|408422576|emb|CCJ09987.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus ST228]
gi|408424564|emb|CCJ11951.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus ST228]
gi|408426553|emb|CCJ13916.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus ST228]
gi|408428541|emb|CCJ25706.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus ST228]
gi|408430530|emb|CCJ17845.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus ST228]
gi|408432523|emb|CCJ19808.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus ST228]
gi|408434512|emb|CCJ21772.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus ST228]
gi|408436497|emb|CCJ23740.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus ST228]
gi|443408203|gb|ELS66731.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21236]
gi|443410042|gb|ELS68521.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21196]
Length = 644
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 339/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|145578019|gb|ABP82728.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar tolworthi]
Length = 632
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|228924238|ref|ZP_04087509.1| DNA gyrase subunit B [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|228835456|gb|EEM80826.1| DNA gyrase subunit B [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
Length = 640
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYND 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 NELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>gi|145577967|gb|ABP82702.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
cereus]
Length = 632
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKVLSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|418905552|ref|ZP_13459579.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377764852|gb|EHT88702.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
CIGC345D]
Length = 644
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 339/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHDDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|284023042|ref|ZP_06377440.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 132]
Length = 644
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 339/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|414154088|ref|ZP_11410408.1| DNA gyrase subunit B [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411454273|emb|CCO08312.1| DNA gyrase subunit B [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 638
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 245/506 (48%), Positives = 341/506 (67%), Gaps = 18/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+++RG P T L + GT++ F PD ++F + F T+ RIRELA+
Sbjct: 145 YRQEFARGIPTTELKI----IGKSKSTGTKVTFKPDAEIFEELV-FSLETLTQRIRELAY 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I L+ E DP Q + F GG++++V+ LN K+ LH + G R+ V
Sbjct: 200 LNKGVKITLKDERKDPPVEQV--FQFEGGIKDFVKHLNKTKQVLHPKPIYISGEREQV-- 255
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
++ ALQ+ +D Y++TML YAN+I T+DGGTH G+K +LTR +N G+ +K+ D
Sbjct: 256 -IVEAALQY-NDGYTETMLSYANNIHTVDGGTHEIGLKTALTRVVNDYGRNHNILKNNDA 313
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE +REG T +ISV+VP P+FEGQTKT+LGN EVR +V+ E + +L+ +P V
Sbjct: 314 NLTGEDIREGATIVISVKVPEPQFEGQTKTKLGNSEVRGIVESIFAEKFSTFLDENPSVA 373
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K+++A + AA++AR+L R+KS L + SLPGKLADCS P SE+++VEGDSA
Sbjct: 374 KKIIEKAVTAARVREAARKARELTRRKSALETMSLPGKLADCSEKDPSISELYLVEGDSA 433
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRRFQAILPLRGKI+NVE+ + NEEI+ +I ALG G+ GEDF
Sbjct: 434 GGSAKQGRDRRFQAILPLRGKIINVEKARMDKILANEEIRAMITALGTGI-GEDFDLNKA 492
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHKIII+TDADVDGAHIRTLL+TFFYR+ + L + G +YV PPL++V +G Y Y
Sbjct: 493 RYHKIIIMTDADVDGAHIRTLLMTFFYRHMRPLIEAGYLYVAQPPLFRVRKGNLDSYVYS 552
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+ EL+++ + + +IQR+KGLGEM P QLWETT++P+ R + Q+ ++DA EA+ F
Sbjct: 553 EKELEELLKRIGHDKV-NIQRYKGLGEMNPEQLWETTMDPDTRTMLQVTLQDAIEADATF 611
Query: 479 SSLMGARVDTRKELIQNAANLV-NLD 503
S LMG RV+ R++ IQ A V NLD
Sbjct: 612 SMLMGDRVEPRRDFIQENARYVRNLD 637
>gi|21281734|ref|NP_644820.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MW2]
gi|87161454|ref|YP_492727.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88193828|ref|YP_498613.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|151220216|ref|YP_001331039.1| DNA gyrase B subunit [Staphylococcus aureus subsp. aureus str.
Newman]
gi|161508271|ref|YP_001573930.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|253733834|ref|ZP_04867999.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TCH130]
gi|258451362|ref|ZP_05699393.1| DNA gyrase, B subunit [Staphylococcus aureus A5948]
gi|262049437|ref|ZP_06022309.1| DNA gyrase subunit B [Staphylococcus aureus D30]
gi|262051893|ref|ZP_06024108.1| DNA gyrase subunit B [Staphylococcus aureus 930918-3]
gi|282902636|ref|ZP_06310529.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C160]
gi|282918073|ref|ZP_06325823.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus D139]
gi|282920724|ref|ZP_06328443.1| DNA gyrase, B subunit [Staphylococcus aureus A9765]
gi|282921295|ref|ZP_06329013.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C427]
gi|283767795|ref|ZP_06340710.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus H19]
gi|297209447|ref|ZP_06925845.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|300911471|ref|ZP_07128920.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus TCH70]
gi|379013370|ref|YP_005289606.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VC40]
gi|379019818|ref|YP_005296480.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus M013]
gi|384546274|ref|YP_005735527.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus ED133]
gi|387779222|ref|YP_005754020.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus LGA251]
gi|415687298|ref|ZP_11451225.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus CGS01]
gi|416845644|ref|ZP_11906099.1| DNA gyrase subunit B [Staphylococcus aureus O46]
gi|417648054|ref|ZP_12297884.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21189]
gi|417799292|ref|ZP_12446436.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21310]
gi|417897325|ref|ZP_12541262.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21235]
gi|417899938|ref|ZP_12543838.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21259]
gi|417905250|ref|ZP_12549062.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21269]
gi|418286939|ref|ZP_12899575.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21209]
gi|418318231|ref|ZP_12929640.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21232]
gi|418561814|ref|ZP_13126292.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21262]
gi|418569364|ref|ZP_13133697.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21283]
gi|418577923|ref|ZP_13142021.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1114]
gi|418596805|ref|ZP_13160353.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21342]
gi|418641274|ref|ZP_13203487.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-24]
gi|418648772|ref|ZP_13210809.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-88]
gi|418650154|ref|ZP_13212176.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-91]
gi|418657144|ref|ZP_13218921.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-105]
gi|418658950|ref|ZP_13220646.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-111]
gi|418902289|ref|ZP_13456333.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1770]
gi|418910550|ref|ZP_13464538.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG547]
gi|418927294|ref|ZP_13481184.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1612]
gi|418933015|ref|ZP_13486841.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIGC128]
gi|418949662|ref|ZP_13501899.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-160]
gi|418986990|ref|ZP_13534666.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1835]
gi|419773340|ref|ZP_14299349.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CO-23]
gi|422742288|ref|ZP_16796295.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus MRSA177]
gi|422745337|ref|ZP_16799280.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus MRSA131]
gi|440708266|ref|ZP_20888936.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21282]
gi|440736072|ref|ZP_20915673.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus DSM 20231]
gi|448740839|ref|ZP_21722813.1| DNA gyrase subunit B [Staphylococcus aureus KT/314250]
gi|448744200|ref|ZP_21726100.1| DNA gyrase subunit B [Staphylococcus aureus KT/Y21]
gi|59797750|sp|Q6GD85.3|GYRB_STAAS RecName: Full=DNA gyrase subunit B
gi|59799585|sp|P0A0K7.2|GYRB_STAAW RecName: Full=DNA gyrase subunit B
gi|59799586|sp|P0A0K8.2|GYRB_STAAU RecName: Full=DNA gyrase subunit B
gi|93204588|sp|Q2FKQ1.3|GYRB_STAA3 RecName: Full=DNA gyrase subunit B
gi|296395|emb|CAA50570.1| DNA gyrase [Staphylococcus aureus]
gi|540541|dbj|BAA01369.1| DNA gyrase B [Staphylococcus aureus]
gi|21203169|dbj|BAB93870.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MW2]
gi|87127428|gb|ABD21942.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87201386|gb|ABD29196.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|150373016|dbj|BAF66276.1| DNA gyrase B subunit [Staphylococcus aureus subsp. aureus str.
Newman]
gi|160367080|gb|ABX28051.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|253728137|gb|EES96866.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TCH130]
gi|257860892|gb|EEV83709.1| DNA gyrase, B subunit [Staphylococcus aureus A5948]
gi|259160220|gb|EEW45249.1| DNA gyrase subunit B [Staphylococcus aureus 930918-3]
gi|259162434|gb|EEW47004.1| DNA gyrase subunit B [Staphylococcus aureus D30]
gi|282315710|gb|EFB46094.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C427]
gi|282318358|gb|EFB48718.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus D139]
gi|282594132|gb|EFB99120.1| DNA gyrase, B subunit [Staphylococcus aureus A9765]
gi|282597095|gb|EFC02054.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C160]
gi|283461674|gb|EFC08758.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus H19]
gi|296885908|gb|EFH24843.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|298693327|gb|ADI96549.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ED133]
gi|300887650|gb|EFK82846.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus TCH70]
gi|315197923|gb|EFU28256.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus CGS01]
gi|320141422|gb|EFW33265.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus MRSA131]
gi|320144405|gb|EFW36170.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus MRSA177]
gi|323443267|gb|EGB00884.1| DNA gyrase subunit B [Staphylococcus aureus O46]
gi|329731718|gb|EGG68078.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21189]
gi|334274194|gb|EGL92521.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21310]
gi|341839825|gb|EGS81379.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21235]
gi|341844001|gb|EGS85221.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21259]
gi|341844115|gb|EGS85334.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21269]
gi|344176324|emb|CCC86774.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus LGA251]
gi|359829127|gb|AEV77105.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus M013]
gi|365165103|gb|EHM56932.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21209]
gi|365243554|gb|EHM84228.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21232]
gi|371975308|gb|EHO92603.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21262]
gi|371985759|gb|EHP02813.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21283]
gi|374362067|gb|AEZ36172.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus VC40]
gi|374396606|gb|EHQ67837.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21342]
gi|375019434|gb|EHS12988.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-24]
gi|375025187|gb|EHS18594.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-88]
gi|375028623|gb|EHS21966.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-91]
gi|375031320|gb|EHS24602.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-105]
gi|375036979|gb|EHS30035.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-111]
gi|375378271|gb|EHS81677.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-160]
gi|377699805|gb|EHT24151.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1114]
gi|377721002|gb|EHT45147.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1835]
gi|377728364|gb|EHT52466.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG547]
gi|377741004|gb|EHT65000.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1612]
gi|377745642|gb|EHT69618.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1770]
gi|377773189|gb|EHT96935.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIGC128]
gi|383972913|gb|EID88936.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CO-23]
gi|436429839|gb|ELP27203.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus DSM 20231]
gi|436505158|gb|ELP41103.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21282]
gi|445548370|gb|ELY16622.1| DNA gyrase subunit B [Staphylococcus aureus KT/314250]
gi|445562477|gb|ELY18648.1| DNA gyrase subunit B [Staphylococcus aureus KT/Y21]
Length = 644
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 339/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|255994573|ref|ZP_05427708.1| DNA gyrase, B subunit [Eubacterium saphenum ATCC 49989]
gi|255993286|gb|EEU03375.1| DNA gyrase, B subunit [Eubacterium saphenum ATCC 49989]
Length = 651
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/504 (49%), Positives = 347/504 (68%), Gaps = 12/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+YSRGK +T L + + G+ F PD Q+F I+FD++T+ R RE+AF
Sbjct: 156 YKQEYSRGKTMTKLEI----IGTSTETGSITEFMPDDQIFDD-IEFDYDTLNYRFREMAF 210
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I L ED + + N Y + GG++E++++ N +K+ LH D++ F K +D +
Sbjct: 211 LNKGLKIQL--EDKRKGREKTNTYCYEGGIKEFIKYQNKNKEKLHEDIIFFDKKLDNSQV 268
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D YS+T+L YAN+I T +GG H+ G K++LTR +N KK+K + + D SL
Sbjct: 269 EVAIQY-TDRYSETLLSYANNINTTEGGYHLSGFKSALTRVINDYAKKAKLIGENDNSLL 327
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IISV++ NP+FEGQTKT+LGN +R VV+ +V E + +L HP I
Sbjct: 328 GEDVREGLTAIISVKLTNPQFEGQTKTKLGNSFIRGVVETAVNENVYAFLIEHPKQAKII 387
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + + + AAK+ARDL R+K+ L S +LPGKL+DCS P+ SEIF+VEGDSAGGS
Sbjct: 388 IEKCIKSARVREAAKKARDLTRRKTALDSLALPGKLSDCSEKDPKLSEIFLVEGDSAGGS 447
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
A+QGRDR QA+LPLRGKILNVE+ + +EEI+N+I A G G+ G+DF+ + LRYH
Sbjct: 448 ARQGRDRNRQAVLPLRGKILNVEKARLDKILSSEEIKNMITAFGCGI-GDDFELDKLRYH 506
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYRY L + G +Y PPLYKV++GK+ Y Y + E
Sbjct: 507 KIIIMTDADVDGAHIRTLLLTFFYRYMMPLVEAGHVYAAQPPLYKVKKGKKEYYTYSENE 566
Query: 422 LKKVKSSFPSNALYS-IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
KK+ + S IQR+KGLGEM QLWETT++ ++R L Q+ +EDA+ A+ +F++
Sbjct: 567 QKKLMKNLAEQGGKSDIQRYKGLGEMDYNQLWETTMDYDKRTLIQITVEDASAADDIFTT 626
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG +V RK+ I +NA + NLD
Sbjct: 627 LMGDKVPPRKKFIEENARYVKNLD 650
>gi|49484917|ref|YP_042138.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MSSA476]
gi|386829730|ref|YP_006236384.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|49243360|emb|CAG41777.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MSSA476]
gi|385195122|emb|CCG14722.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus HO 5096
0412]
Length = 643
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 339/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 148 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 204 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 263 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 322 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 382 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 442 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 501 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 561 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 620
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 621 MGDVVENRRQFIEDNAVYANLD 642
>gi|52145204|ref|YP_081624.1| DNA gyrase subunit B [Bacillus cereus E33L]
gi|229094604|ref|ZP_04225671.1| DNA gyrase subunit B [Bacillus cereus Rock3-42]
gi|229159054|ref|ZP_04287110.1| DNA gyrase subunit B [Bacillus cereus ATCC 4342]
gi|300118805|ref|ZP_07056525.1| DNA gyrase subunit B [Bacillus cereus SJ1]
gi|51978673|gb|AAU20223.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit B)
[Bacillus cereus E33L]
gi|228624473|gb|EEK81244.1| DNA gyrase subunit B [Bacillus cereus ATCC 4342]
gi|228688851|gb|EEL42682.1| DNA gyrase subunit B [Bacillus cereus Rock3-42]
gi|298723773|gb|EFI64495.1| DNA gyrase subunit B [Bacillus cereus SJ1]
Length = 640
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNE 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>gi|164510799|emb|CAK18881.1| topoisomerase II subunit B [Staphylococcus intermedius NCTC 11048]
Length = 640
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 244/502 (48%), Positives = 331/502 (65%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+HQ Y +G P L V D+ GT IRF D +F +++ T+ RIRELAF
Sbjct: 145 HHQAYHKGVPAFDLK----QVGDTDQTGTVIRFKADGTIFQETTVYNYETLQKRIRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L E D E + + Y + GG++ YV+ +N +K+PLH+ + + D I +
Sbjct: 201 LNKGIRITLTDE-RDEENVREDSYHYEGGIKSYVELINENKEPLHEEPIYVHQTRDDIEV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S ++ +L YAN+I T +GGTH +G K +LTR LN+ G +SK +K+ LS
Sbjct: 260 EIALQYNS-GFATNLLTYANNIHTYEGGTHEDGFKRALTRVLNNYGAQSKLIKEDKDRLS 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR++VD+ E +L HP V I
Sbjct: 319 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRVFSELFERFLFEHPQVARII 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS P ESEIF+VEGDSAGGS
Sbjct: 379 VEKGIMASRARIAAKKAREVTRRKSALDISSLPGKLADCSSKDPSESEIFLVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ ++ A G G+ GE F RYH
Sbjct: 439 TKSGRDSRTQAILPLRGKILNVEKARLDKILSNNEIRQMVTAFGTGIGGE-FDISKARYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 498 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K +SI R+KGLGEM QLWETT+NPE R + Q+ ++DA EA+ F L
Sbjct: 558 LDKLKEKLNPTPKWSIARYKGLGEMNADQLWETTMNPENRAMLQVTLDDAIEADQTFEML 617
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 618 MGDVVENRRQFIEDNAVYANLD 639
>gi|154151176|ref|YP_001404794.1| DNA gyrase subunit B [Methanoregula boonei 6A8]
gi|153999728|gb|ABS56151.1| DNA gyrase, B subunit [Methanoregula boonei 6A8]
Length = 708
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 242/479 (50%), Positives = 336/479 (70%), Gaps = 13/479 (2%)
Query: 30 GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA 89
GTRI F PD +F T FD++ +A R+RELAFLN LTI + +D Y +A
Sbjct: 237 GTRIHFVPDASIFETTT-FDYDVLAHRLRELAFLNAGLTIII----TDERTGDSATYCYA 291
Query: 90 GGLEEYVQWLNTDKKPLHD--VVGFRKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTI 146
GGL E+V++LN + LH + +KD + + +++A+Q+ + Y + + Y NS+ T
Sbjct: 292 GGLSEFVKYLNEGNEVLHPNPIYITKKDAENKLDLEVAMQYTT-GYDEKLYTYVNSVNTR 350
Query: 147 DGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISVRVPNPEFEGQ 205
+GGTH+EG ++++TR +N + K++ +K+ ++L GE VREGLT ++SV++ NP+FEGQ
Sbjct: 351 EGGTHLEGFRSAITRGINVVAKRNGIIKENAQVTLRGEDVREGLTSVVSVKMANPQFEGQ 410
Query: 206 TKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQK 265
TK RLGN V+ +VD V LTEY + +P VL I+ K+LSA KA AA+ ARDL R+K
Sbjct: 411 TKMRLGNSSVKGIVDSLVYAALTEYFDENPGVLKIIVEKALSAAKAREAARNARDLARRK 470
Query: 266 SVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVER 325
S L S+ LPGKL+DCS P +SEI+IVEGDSAGGSAKQGRDR+FQAILPLRGKILNVE+
Sbjct: 471 SSLESAGLPGKLSDCSERDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEK 530
Query: 326 KDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFY 385
E + KN EIQ LI A+G G+ GE F E RYH+I+I+TDADVDGAHIRTLLLTFFY
Sbjct: 531 AGEHQILKNAEIQTLINAIGTGI-GEKFDPERARYHRIVIMTDADVDGAHIRTLLLTFFY 589
Query: 386 RYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGE 445
RY + L + G +Y+ PPL+++ +GK+ +Y Y +AE++KV ++ + SIQR+KGLGE
Sbjct: 590 RYMRKLIELGYVYIAQPPLFRIAKGKEEKYVYKEAEMQKVSAAMGDKGV-SIQRYKGLGE 648
Query: 446 MMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 503
M QLW+TT++PE R+ ++ IEDA EA+ +F +LMG V+ RK I ++A + NLD
Sbjct: 649 MNAQQLWDTTMDPENRIFLKVSIEDAYEADEMFKTLMGKDVEIRKNFIMRHAKEVTNLD 707
>gi|418953131|ref|ZP_13505137.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-189]
gi|418984497|ref|ZP_13532192.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1500]
gi|375375648|gb|EHS79218.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-189]
gi|377710096|gb|EHT34348.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1500]
Length = 640
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 338/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 145 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 201 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K+ LS
Sbjct: 260 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEDKDRLS 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 319 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 379 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 439 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 498 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 558 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 617
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 618 MGDVVENRRQFIEDNAVYANLD 639
>gi|118475783|ref|YP_892934.1| DNA gyrase subunit B [Bacillus thuringiensis str. Al Hakam]
gi|118415008|gb|ABK83427.1| DNA gyrase subunit B [Bacillus thuringiensis str. Al Hakam]
Length = 645
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 248/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 151 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 206
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 207 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 262 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 321 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 381 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 441 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 500 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNE 559
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 560 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 619
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 620 ILMGDKVEPRRNFIQENAKYVKNLD 644
>gi|315640352|ref|ZP_07895468.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
italicus DSM 15952]
gi|315483888|gb|EFU74368.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
italicus DSM 15952]
Length = 649
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 245/507 (48%), Positives = 338/507 (66%), Gaps = 14/507 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG V+ LT + DR GT + F PD ++F F+ +A R+RELAF
Sbjct: 150 YFQEYHRGAVVSDLTI----IGETDRHGTEVHFVPDPEIFRETTTFEFEKLATRVRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I++ ED E+ + + F GG++ YV+ LN K L + + + I++
Sbjct: 206 LNRGLHISI--EDKRKEEAEVRAFHFEGGIKSYVEHLNATKTVLFPEPIYLEGNQQDISV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ +D Y +L +AN+I T +GGTH G K +LTR +N +K K +++ D +LS
Sbjct: 264 EVSMQY-TDGYHTNLLSFANNIHTYEGGTHESGFKTALTRVINDYARKQKLMRESDENLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +IS++ P+P+FEGQTKT+LGN EVR V D+ E+ ++L +P V I
Sbjct: 323 GEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEHFAKFLMENPTVGRQI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A KA LAAKRAR++ R+K L SSLPGKLADCSS ++ E+FIVEGDSAGGS
Sbjct: 383 VEKGLLASKARLAAKRAREVTRRKGALEISSLPGKLADCSSREADKCELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RYH
Sbjct: 443 AKQGRDREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD--- 418
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PPLY V++GK + Y
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQPPLYGVKQGKNITYVQPGKQ 561
Query: 419 -DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ ELK++ SS P++ ++QR+KGLGEM QLWETT++PE RM+ Q+ ++DA EA+ V
Sbjct: 562 AEDELKQIVSSLPASPKPNVQRYKGLGEMDDHQLWETTMDPENRMMLQVSVDDAIEADQV 621
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
F LMG RV+ R+ I+ A+ V NLD
Sbjct: 622 FEMLMGDRVEPRRAFIEENAHYVKNLD 648
>gi|152973859|ref|YP_001373376.1| DNA gyrase subunit B [Bacillus cytotoxicus NVH 391-98]
gi|152022611|gb|ABS20381.1| DNA gyrase, B subunit [Bacillus cytotoxicus NVH 391-98]
Length = 640
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 247/505 (48%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + DR GT RF PD ++F +D + +A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKV----IGETDRTGTVTRFKPDPEIFKETTVYDFDILATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E+ Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRENK-----QKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGAKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDISKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPL+KV++GK++QY Y++
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYVYIAQPPLFKVQQGKKIQYAYNE 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+++ + P+ SIQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELERILAELPAQPKPSIQRYKGLGEMNPAQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>gi|384173667|ref|YP_005555052.1| DNA gyrase, B subunit [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349592891|gb|AEP89078.1| DNA gyrase, B subunit [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 638
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 243/503 (48%), Positives = 340/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG PVT L + D GT F PD ++FT ++D++ +A R+RELAF
Sbjct: 143 HRQTYKRGVPVTDLEI----IGETDHTGTTTHFVPDPEIFTETTEYDYDLLANRVRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 199 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N +K +K+ D +LS
Sbjct: 257 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D + ++ +PD I
Sbjct: 316 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 376 VDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 436 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D E
Sbjct: 495 KVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ + P +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 555 LEELLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEML 614
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 615 MGDKVEPRRNFIEANARYVKNLD 637
>gi|242372598|ref|ZP_04818172.1| DNA gyrase subunit B [Staphylococcus epidermidis M23864:W1]
gi|242349653|gb|EES41254.1| DNA gyrase subunit B [Staphylococcus epidermidis M23864:W1]
Length = 643
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 248/502 (49%), Positives = 334/502 (66%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + D+ GT IRF D +FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EIGETDQTGTAIRFKADGDIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I LR E + + Y + GG++ YV+ LN +K+P+H + + + D I +
Sbjct: 205 LNKGIQITLRDEREEEVRED--SYHYEGGIKSYVELLNENKEPIHQEPIYIHQTKDDIEV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LS
Sbjct: 263 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLS 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I
Sbjct: 322 GEDTREGLTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPSVGRII 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS P+ESEIF+VEGDSAGGS
Sbjct: 382 VEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPDESEIFLVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 442 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 501 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K+ +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F L
Sbjct: 561 LDKLKAELNPTPKWSISRYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEML 620
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 621 MGDVVENRRQFIEDNAVYANLD 642
>gi|423355976|ref|ZP_17333600.1| DNA gyrase subunit B [Bacillus cereus IS075]
gi|423374937|ref|ZP_17352274.1| DNA gyrase subunit B [Bacillus cereus AND1407]
gi|423554056|ref|ZP_17530382.1| DNA gyrase subunit B [Bacillus cereus ISP3191]
gi|423571385|ref|ZP_17547628.1| DNA gyrase subunit B [Bacillus cereus MSX-A12]
gi|401080923|gb|EJP89205.1| DNA gyrase subunit B [Bacillus cereus IS075]
gi|401093153|gb|EJQ01268.1| DNA gyrase subunit B [Bacillus cereus AND1407]
gi|401181489|gb|EJQ88637.1| DNA gyrase subunit B [Bacillus cereus ISP3191]
gi|401201206|gb|EJR08082.1| DNA gyrase subunit B [Bacillus cereus MSX-A12]
Length = 642
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 248/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 148 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 203
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 204 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 259 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 318 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 378 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 438 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 497 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNE 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 557 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 616
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 617 ILMGDKVEPRRNFIQENAKYVKNLD 641
>gi|404477339|ref|YP_006708769.1| DNA gyrase subunit B [Staphylococcus aureus 08BA02176]
gi|404438828|gb|AFR72021.1| DNA gyrase subunit B [Staphylococcus aureus 08BA02176]
Length = 640
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 338/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D +FT +++ T+ RIRELAF
Sbjct: 145 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGDIFTETTVYNYETLQQRIRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 201 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 260 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 319 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 379 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 439 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 498 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 558 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 617
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 618 MGDVVENRRQFIEDNAVYANLD 639
>gi|289422479|ref|ZP_06424322.1| DNA gyrase, B subunit [Peptostreptococcus anaerobius 653-L]
gi|429727415|ref|ZP_19262187.1| DNA gyrase, B subunit [Peptostreptococcus anaerobius VPI 4330]
gi|289157051|gb|EFD05673.1| DNA gyrase, B subunit [Peptostreptococcus anaerobius 653-L]
gi|429152573|gb|EKX95391.1| DNA gyrase, B subunit [Peptostreptococcus anaerobius VPI 4330]
Length = 635
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 248/503 (49%), Positives = 341/503 (67%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +G VT V+ + K+ GT I F PD +F + F + T+ R REL+F
Sbjct: 141 YRQRYEKG--VTKTKLEVVDENQKE-SGTSITFMPDASIFDEVV-FSYETLEYRFRELSF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I + EK++ + + GGL EYV++LN K LHD ++ K D TI
Sbjct: 197 LNRVIKIVFDDKRKGQEKSK--TFHYTGGLIEYVKYLNRTKNTLHDQIIYVDKMQDDCTI 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+LALQ+ +DAYS+ + +AN+I T +GG H+ G K +LT+ +N +++ +KDKD +L+
Sbjct: 255 ELALQY-TDAYSENIYSFANNINTHEGGVHLSGFKTALTKAMNDYARRNNILKDKDSNLT 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REG+T I+SV++P P+FEGQTKT+LGN +R +VD E + ++E +P V I
Sbjct: 314 GEDIREGITAIVSVKLPEPQFEGQTKTKLGNTFMRGIVDSIANEEIGAFMEENPSVARVI 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L + +A AAK+AR+L R+KSVL ++SLPGKLADCS +PE+SEIF+VEGDSAGGS
Sbjct: 374 IDKCLRSQRAREAAKKARELTRRKSVLETTSLPGKLADCSEKSPEKSEIFLVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR QAILPLRGKILNVE+ + +EEI+N+I A G G+ GEDF + LRYH
Sbjct: 434 AKGGRDRNIQAILPLRGKILNVEKSRLDKILSSEEIKNMITAFGCGI-GEDFDEAKLRYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFF+RY + L ++G +Y +PPL+K+++ K+ Y Y D E
Sbjct: 493 KIIIMTDADVDGAHIRTLLLTFFFRYMRPLIEQGYVYAAMPPLFKIKKAKKEYYAYTDRE 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + I R+KGLGEM QLWETT++PEQR+L+Q+ IEDA A+ FS L
Sbjct: 553 LGSLLDEVGRQGT-EISRYKGLGEMNANQLWETTMDPEQRILQQVTIEDAIFADETFSML 611
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V R+E I +NA + NLD
Sbjct: 612 MGDKVAPRREFIEENAKYVRNLD 634
>gi|221141520|ref|ZP_03566013.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus str. JKD6009]
gi|257424201|ref|ZP_05600630.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 55/2053]
gi|257426878|ref|ZP_05603280.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 65-1322]
gi|257429514|ref|ZP_05605901.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257432161|ref|ZP_05608524.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257435122|ref|ZP_05611173.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M876]
gi|258423233|ref|ZP_05686125.1| DNA gyrase subunit B [Staphylococcus aureus A9635]
gi|282907052|ref|ZP_06314900.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Btn1260]
gi|282910031|ref|ZP_06317839.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282912279|ref|ZP_06320075.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282912919|ref|ZP_06320711.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M899]
gi|282922547|ref|ZP_06330237.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C101]
gi|283959489|ref|ZP_06376930.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293511562|ref|ZP_06670256.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M809]
gi|293550171|ref|ZP_06672843.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M1015]
gi|295429302|ref|ZP_06821924.1| hypothetical protein SIAG_01512 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297589196|ref|ZP_06947837.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus MN8]
gi|304379953|ref|ZP_07362682.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|384860687|ref|YP_005743407.1| DNA topoisomerase subunit B [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|384866349|ref|YP_005746545.1| DNA topoisomerase subunit B [Staphylococcus aureus subsp. aureus
TCH60]
gi|384868593|ref|YP_005751307.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus T0131]
gi|387141643|ref|YP_005730036.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TW20]
gi|415683078|ref|ZP_11448344.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus CGS00]
gi|417888971|ref|ZP_12533071.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21195]
gi|417890994|ref|ZP_12535061.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21200]
gi|418281330|ref|ZP_12894143.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21178]
gi|418281879|ref|ZP_12894677.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21202]
gi|418307216|ref|ZP_12918941.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21194]
gi|418559586|ref|ZP_13124125.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21252]
gi|418565294|ref|ZP_13129704.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21264]
gi|418580682|ref|ZP_13144768.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1605]
gi|418601048|ref|ZP_13164494.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21345]
gi|418872309|ref|ZP_13426653.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-125]
gi|418887938|ref|ZP_13442077.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1524]
gi|418890522|ref|ZP_13444647.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1176]
gi|418896380|ref|ZP_13450457.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418899314|ref|ZP_13453378.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1214]
gi|418907689|ref|ZP_13461707.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG149]
gi|418915846|ref|ZP_13469811.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1267]
gi|418921590|ref|ZP_13475514.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1233]
gi|418947149|ref|ZP_13499537.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-157]
gi|418981974|ref|ZP_13529684.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1242]
gi|418992735|ref|ZP_13540377.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG290]
gi|424786730|ref|ZP_18213514.1| DNA gyrase subunit B [Staphylococcus aureus CN79]
gi|59797755|sp|Q6GKU0.3|GYRB_STAAR RecName: Full=DNA gyrase subunit B
gi|257273219|gb|EEV05321.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 55/2053]
gi|257276509|gb|EEV07960.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 65-1322]
gi|257279995|gb|EEV10582.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257283040|gb|EEV13172.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257285718|gb|EEV15834.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M876]
gi|257846562|gb|EEV70584.1| DNA gyrase subunit B [Staphylococcus aureus A9635]
gi|269939531|emb|CBI47889.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TW20]
gi|282314768|gb|EFB45154.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C101]
gi|282323019|gb|EFB53338.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M899]
gi|282323975|gb|EFB54291.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282326097|gb|EFB56402.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282329951|gb|EFB59472.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Btn1260]
gi|283789081|gb|EFC27908.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290919218|gb|EFD96294.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M1015]
gi|291465520|gb|EFF08052.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M809]
gi|295127061|gb|EFG56705.1| hypothetical protein SIAG_01512 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297577707|gb|EFH96420.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus MN8]
gi|302749916|gb|ADL64093.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|304341533|gb|EFM07443.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|312436854|gb|ADQ75925.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus TCH60]
gi|315195231|gb|EFU25619.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
aureus subsp. aureus CGS00]
gi|329312728|gb|AEB87141.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus T0131]
gi|341852861|gb|EGS93744.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21200]
gi|341853903|gb|EGS94782.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21195]
gi|365165431|gb|EHM57218.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21178]
gi|365172167|gb|EHM62897.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21202]
gi|365245785|gb|EHM86389.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21194]
gi|371974449|gb|EHO91781.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21264]
gi|371974764|gb|EHO92081.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21252]
gi|374400039|gb|EHQ71162.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21345]
gi|375367363|gb|EHS71326.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-125]
gi|375376834|gb|EHS80348.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus IS-157]
gi|377705406|gb|EHT29711.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1242]
gi|377708099|gb|EHT32391.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1214]
gi|377713874|gb|EHT38082.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1605]
gi|377735389|gb|EHT59422.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1176]
gi|377737693|gb|EHT61703.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1233]
gi|377748742|gb|EHT72698.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG290]
gi|377753673|gb|EHT77590.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1267]
gi|377756551|gb|EHT80448.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG1524]
gi|377760519|gb|EHT84398.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus CIG149]
gi|377763107|gb|EHT86964.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|421955106|gb|EKU07449.1| DNA gyrase subunit B [Staphylococcus aureus CN79]
Length = 644
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 338/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K+ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEDKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|423394308|ref|ZP_17371509.1| DNA gyrase subunit B [Bacillus cereus BAG2X1-1]
gi|423410273|ref|ZP_17387420.1| DNA gyrase subunit B [Bacillus cereus BAG2X1-3]
gi|401648270|gb|EJS65866.1| DNA gyrase subunit B [Bacillus cereus BAG2X1-3]
gi|401658679|gb|EJS76169.1| DNA gyrase subunit B [Bacillus cereus BAG2X1-1]
Length = 642
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 248/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 148 HYQKYERGIPAADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 203
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 204 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 259 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 318 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 378 KVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 438 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 497 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 557 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 616
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 617 ILMGDKVEPRRNFIQENAKYVKNLD 641
>gi|145577999|gb|ABP82718.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar roskildiensis]
Length = 632
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 346/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NERYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNE 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|293497972|ref|ZP_06665826.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 58-424]
gi|291096903|gb|EFE27161.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 58-424]
Length = 644
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 338/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K+ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEDKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|30260200|ref|NP_842577.1| DNA gyrase subunit B [Bacillus anthracis str. Ames]
gi|47525259|ref|YP_016608.1| DNA gyrase subunit B [Bacillus anthracis str. 'Ames Ancestor']
gi|49183044|ref|YP_026296.1| DNA gyrase subunit B [Bacillus anthracis str. Sterne]
gi|49476686|ref|YP_034365.1| DNA gyrase subunit B [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|65317473|ref|ZP_00390432.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
IV), B subunit [Bacillus anthracis str. A2012]
gi|165873014|ref|ZP_02217635.1| DNA gyrase, B subunit [Bacillus anthracis str. A0488]
gi|167635023|ref|ZP_02393340.1| DNA gyrase, B subunit [Bacillus anthracis str. A0442]
gi|167641730|ref|ZP_02399973.1| DNA gyrase, B subunit [Bacillus anthracis str. A0193]
gi|170689461|ref|ZP_02880651.1| DNA gyrase, B subunit [Bacillus anthracis str. A0465]
gi|170707498|ref|ZP_02897951.1| DNA gyrase, B subunit [Bacillus anthracis str. A0389]
gi|177655278|ref|ZP_02936832.1| DNA gyrase, B subunit [Bacillus anthracis str. A0174]
gi|190569295|ref|ZP_03022189.1| DNA gyrase, B subunit [Bacillus anthracis str. Tsiankovskii-I]
gi|196036134|ref|ZP_03103534.1| DNA gyrase, B subunit [Bacillus cereus W]
gi|196041949|ref|ZP_03109236.1| DNA gyrase, B subunit [Bacillus cereus NVH0597-99]
gi|196045551|ref|ZP_03112782.1| DNA gyrase, B subunit [Bacillus cereus 03BB108]
gi|206975909|ref|ZP_03236820.1| DNA gyrase, B subunit [Bacillus cereus H3081.97]
gi|217957586|ref|YP_002336128.1| DNA gyrase subunit B [Bacillus cereus AH187]
gi|218901211|ref|YP_002449045.1| DNA gyrase subunit B [Bacillus cereus AH820]
gi|227812683|ref|YP_002812692.1| DNA gyrase subunit B [Bacillus anthracis str. CDC 684]
gi|228918105|ref|ZP_04081633.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228930499|ref|ZP_04093499.1| DNA gyrase subunit B [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228931511|ref|ZP_04094421.1| DNA gyrase subunit B [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228949215|ref|ZP_04111483.1| DNA gyrase subunit B [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228988722|ref|ZP_04148807.1| DNA gyrase subunit B [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|229124996|ref|ZP_04254170.1| DNA gyrase subunit B [Bacillus cereus 95/8201]
gi|229142242|ref|ZP_04270766.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST26]
gi|229187722|ref|ZP_04314858.1| DNA gyrase subunit B [Bacillus cereus BGSC 6E1]
gi|229603398|ref|YP_002864662.1| DNA gyrase subunit B [Bacillus anthracis str. A0248]
gi|254687066|ref|ZP_05150924.1| DNA gyrase subunit B [Bacillus anthracis str. CNEVA-9066]
gi|254724151|ref|ZP_05185936.1| DNA gyrase subunit B [Bacillus anthracis str. A1055]
gi|254742123|ref|ZP_05199810.1| DNA gyrase subunit B [Bacillus anthracis str. Kruger B]
gi|254755967|ref|ZP_05207999.1| DNA gyrase subunit B [Bacillus anthracis str. Vollum]
gi|254761353|ref|ZP_05213375.1| DNA gyrase subunit B [Bacillus anthracis str. Australia 94]
gi|375282106|ref|YP_005102538.1| DNA gyrase subunit B [Bacillus cereus NC7401]
gi|376264036|ref|YP_005116748.1| DNA gyrase subunit B [Bacillus cereus F837/76]
gi|386733878|ref|YP_006207059.1| DNA gyrase subunit B [Bacillus anthracis str. H9401]
gi|421508143|ref|ZP_15955059.1| DNA gyrase subunit B [Bacillus anthracis str. UR-1]
gi|421640490|ref|ZP_16081073.1| DNA gyrase subunit B [Bacillus anthracis str. BF1]
gi|49066055|sp|Q9X3Y6.2|GYRB_BACAN RecName: Full=DNA gyrase subunit B
gi|30253521|gb|AAP24063.1| DNA gyrase, B subunit [Bacillus anthracis str. Ames]
gi|47500407|gb|AAT29083.1| DNA gyrase, B subunit [Bacillus anthracis str. 'Ames Ancestor']
gi|49176971|gb|AAT52347.1| DNA gyrase, B subunit [Bacillus anthracis str. Sterne]
gi|49328242|gb|AAT58888.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit B)
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|51988026|dbj|BAD44714.1| gyraseB [Bacillus anthracis]
gi|164711226|gb|EDR16782.1| DNA gyrase, B subunit [Bacillus anthracis str. A0488]
gi|167510284|gb|EDR85687.1| DNA gyrase, B subunit [Bacillus anthracis str. A0193]
gi|167529497|gb|EDR92247.1| DNA gyrase, B subunit [Bacillus anthracis str. A0442]
gi|170127494|gb|EDS96368.1| DNA gyrase, B subunit [Bacillus anthracis str. A0389]
gi|170666563|gb|EDT17336.1| DNA gyrase, B subunit [Bacillus anthracis str. A0465]
gi|172080205|gb|EDT65297.1| DNA gyrase, B subunit [Bacillus anthracis str. A0174]
gi|190559602|gb|EDV13593.1| DNA gyrase, B subunit [Bacillus anthracis str. Tsiankovskii-I]
gi|195991301|gb|EDX55269.1| DNA gyrase, B subunit [Bacillus cereus W]
gi|196023758|gb|EDX62434.1| DNA gyrase, B subunit [Bacillus cereus 03BB108]
gi|196027204|gb|EDX65824.1| DNA gyrase, B subunit [Bacillus cereus NVH0597-99]
gi|206746003|gb|EDZ57399.1| DNA gyrase, B subunit [Bacillus cereus H3081.97]
gi|217063046|gb|ACJ77296.1| DNA gyrase, B subunit [Bacillus cereus AH187]
gi|218537455|gb|ACK89853.1| DNA gyrase, B subunit [Bacillus cereus AH820]
gi|227004428|gb|ACP14171.1| DNA gyrase, B subunit [Bacillus anthracis str. CDC 684]
gi|228595790|gb|EEK53474.1| DNA gyrase subunit B [Bacillus cereus BGSC 6E1]
gi|228641260|gb|EEK97567.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST26]
gi|228658497|gb|EEL14163.1| DNA gyrase subunit B [Bacillus cereus 95/8201]
gi|228771034|gb|EEM19515.1| DNA gyrase subunit B [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|228810498|gb|EEM56851.1| DNA gyrase subunit B [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228828154|gb|EEM73878.1| DNA gyrase subunit B [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228829218|gb|EEM74855.1| DNA gyrase subunit B [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228841585|gb|EEM86701.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229267806|gb|ACQ49443.1| DNA gyrase, B subunit [Bacillus anthracis str. A0248]
gi|358350626|dbj|BAL15798.1| DNA gyrase, B subunit [Bacillus cereus NC7401]
gi|364509836|gb|AEW53235.1| DNA gyrase subunit B [Bacillus cereus F837/76]
gi|384383730|gb|AFH81391.1| DNA gyrase subunit B [Bacillus anthracis str. H9401]
gi|401821946|gb|EJT21100.1| DNA gyrase subunit B [Bacillus anthracis str. UR-1]
gi|403392443|gb|EJY89696.1| DNA gyrase subunit B [Bacillus anthracis str. BF1]
Length = 640
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 248/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNE 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>gi|49482258|ref|YP_039482.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MRSA252]
gi|49240387|emb|CAG39033.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MRSA252]
Length = 643
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 338/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 148 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 204 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K+ LS
Sbjct: 263 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEDKDRLS 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 322 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 382 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 442 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 501 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 561 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 620
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 621 MGDVVENRRQFIEDNAVYANLD 642
>gi|145577965|gb|ABP82701.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
mycoides]
Length = 632
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGETDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|416840825|ref|ZP_11903999.1| DNA gyrase subunit B [Staphylococcus aureus O11]
gi|323439694|gb|EGA97412.1| DNA gyrase subunit B [Staphylococcus aureus O11]
Length = 644
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 339/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEYRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|222100717|ref|YP_002535285.1| DNA gyrase subunit B [Thermotoga neapolitana DSM 4359]
gi|221573107|gb|ACM23919.1| DNA gyrase subunit B [Thermotoga neapolitana DSM 4359]
Length = 636
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/513 (49%), Positives = 355/513 (69%), Gaps = 23/513 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGKPVT + + D+ GT +RF PD +F+ +FD + + R+RE+AF
Sbjct: 139 YRQRYERGKPVTLVEV----IGETDKHGTVVRFKPDPLIFSET-EFDPDILEHRLREIAF 193
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-------- 114
L P L I E D N+ + F GGL+E+V++LN KK LHDV+ ++
Sbjct: 194 LVPGLKI----EFEDRINNEKKTFKFDGGLKEFVKYLNRGKKVLHDVIYLKRTEKVKVKD 249
Query: 115 DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK 174
D + +++A Q+ +D+YS+ +L +AN+I+T+DGGTH+ K +LTR +N G+K +K
Sbjct: 250 KEDEVIVEIAFQY-TDSYSEEILSFANTIKTVDGGTHVTAFKTTLTRLMNEYGRKHNFLK 308
Query: 175 DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELH 234
+ D S G+ VREGLT +ISV V NPEFEGQTK++LGN EV++ V+++++E L + +
Sbjct: 309 NGD-SFQGDDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVNRAMREELKKIFDAS 367
Query: 235 PDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVE 294
PD++ +ILSK +S +A AA+RAR++VR+K+VL+S++LPGKLADCSST E +E+FIVE
Sbjct: 368 PDLVRTILSKIMSTKQAREAARRAREMVRRKNVLQSTTLPGKLADCSSTDRENTELFIVE 427
Query: 295 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 354
GDSAGGSAKQ RDR FQA+LP+RGKILNVE+ + KNE+I ++I A+G G+ G+DF
Sbjct: 428 GDSAGGSAKQARDRVFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVAVGTGI-GDDFD 486
Query: 355 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
LRY KIII+TDAD+DGAHIRTLLLT FYRY K L ++G IY+ +PPLY++ GK+
Sbjct: 487 INKLRYGKIIIMTDADIDGAHIRTLLLTLFYRYMKPLIEDGRIYIALPPLYRIRVGKEDF 546
Query: 415 YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
Y Y DAEL + + F + IQR+KGLGEM P QLWETT+NPE R + ++ IEDA EA
Sbjct: 547 YVYSDAELMEYRKMFEGKKM-EIQRYKGLGEMNPEQLWETTMNPETRKIIRVTIEDAEEA 605
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ +F LMG +R+E I+ A + + LDI
Sbjct: 606 DRLFEILMGNDPSSRREFIERHA--LKVKELDI 636
>gi|301051746|ref|YP_003789957.1| DNA topoisomerase IV subunit B [Bacillus cereus biovar anthracis
str. CI]
gi|300373915|gb|ADK02819.1| DNA topoisomerase IV subunit B [Bacillus cereus biovar anthracis
str. CI]
Length = 640
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 248/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKI----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNE 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>gi|384548928|ref|YP_005738180.1| DNA topoisomerase (ATP-hydrolyzing) subunit B, GyrB [Staphylococcus
aureus subsp. aureus JKD6159]
gi|302331777|gb|ADL21970.1| DNA topoisomerase (ATP-hydrolyzing) subunit B, GyrB [Staphylococcus
aureus subsp. aureus JKD6159]
Length = 644
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 338/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEKKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|386727827|ref|YP_006194210.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 71193]
gi|387601296|ref|YP_005732817.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ST398]
gi|418309629|ref|ZP_12921181.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21331]
gi|418980540|ref|ZP_13528319.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus DR10]
gi|283469234|emb|CAQ48445.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ST398]
gi|365238435|gb|EHM79271.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21331]
gi|379991710|gb|EIA13176.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus DR10]
gi|384229120|gb|AFH68367.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 71193]
Length = 644
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 338/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D +FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGDIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|145578013|gb|ABP82725.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar graciosensis]
Length = 632
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGETDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|381210628|ref|ZP_09917699.1| DNA gyrase subunit B [Lentibacillus sp. Grbi]
Length = 641
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 234/502 (46%), Positives = 339/502 (67%), Gaps = 10/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ + +G P + + D GT+ +F PD ++F + +F+ + R+RELAF
Sbjct: 148 YYLGFQKGVPQGKIET----IGETDITGTKTQFKPDPEIFVESTEFNFELLEQRVRELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN +TI+L + +D E EY + GG+ YV+++N +++ LH+ + D I ++
Sbjct: 204 LNKGITISLEDKRTDQEPV---EYHYEGGISSYVKYINRNREVLHEPFYSETEDDQIMVE 260
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+A+Q+ +D ++ + +AN+I T +GG+H G K+ LTR +N +K+ K+ D +LSG
Sbjct: 261 VAIQY-NDGFASNIYSFANNIHTYEGGSHESGFKSGLTRAINDYARKNSMFKENDPNLSG 319
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+ VREGLT I+S++ P+P+FEGQTKT+LGN EV+KV D + E +++L +PDV ++
Sbjct: 320 DDVREGLTAIVSIKHPDPQFEGQTKTKLGNSEVKKVTDSAFSEAFSKFLFENPDVAKLVV 379
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K L A +A LAAK+AR+L R+KS L S+LPGKLADCSS E++IVEGDSAGGSA
Sbjct: 380 EKGLMASRARLAAKKARELTRRKSALEVSNLPGKLADCSSRDASIGELYIVEGDSAGGSA 439
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQGRDR FQAILPLRGKILNVE+ + N+E++ +I ALG G+ GEDF RYHK
Sbjct: 440 KQGRDRHFQAILPLRGKILNVEKARLDKILSNKEVRAMITALGTGI-GEDFDITKARYHK 498
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
I+I+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLYK+++GK Y YDD E+
Sbjct: 499 IVIMTDADVDGAHIRTLLLTFFYRYMRPLIEHGYVYIAQPPLYKIQQGKAAHYAYDDKEM 558
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
+++ + P + +QR+KGLGEM QLWETT++PE R L Q+ + DA +A+ +F LM
Sbjct: 559 ERILNELPKSPKPGLQRYKGLGEMNAEQLWETTMDPETRTLLQVGLSDAMDADNIFDMLM 618
Query: 483 GARVDTRKELI-QNAANLVNLD 503
G +V+ R+ I +NA + NLD
Sbjct: 619 GDKVEPRRNFIEENAQYVQNLD 640
>gi|229199683|ref|ZP_04326326.1| DNA gyrase subunit B [Bacillus cereus m1293]
gi|228583778|gb|EEK41953.1| DNA gyrase subunit B [Bacillus cereus m1293]
Length = 640
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 247/505 (48%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y++
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKIQQGKKIQYAYNE 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELEKILAELPAQPKPGIQRYKGLGEMNPAQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>gi|423572847|ref|ZP_17548966.1| DNA gyrase subunit B [Bacillus cereus MSX-D12]
gi|423608165|ref|ZP_17584057.1| DNA gyrase subunit B [Bacillus cereus VD102]
gi|401216316|gb|EJR23028.1| DNA gyrase subunit B [Bacillus cereus MSX-D12]
gi|401238174|gb|EJR44615.1| DNA gyrase subunit B [Bacillus cereus VD102]
Length = 642
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 247/505 (48%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 148 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 203
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 204 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 259 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 318 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 378 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 438 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y++
Sbjct: 497 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKIQQGKKIQYAYNE 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 557 KELEKILAELPAQPKPGIQRYKGLGEMNPAQLWETTMDPEVRSLLQVSLQDAIEADETFE 616
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 617 ILMGDKVEPRRNFIQENAKYVKNLD 641
>gi|326802621|ref|YP_004320439.1| DNA gyrase subunit B [Aerococcus urinae ACS-120-V-Col10a]
gi|326650211|gb|AEA00394.1| DNA gyrase, B subunit [Aerococcus urinae ACS-120-V-Col10a]
Length = 660
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 245/502 (48%), Positives = 327/502 (65%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+YSRG V+ L V D+ GT + F D ++FT +D T+ R+RELAF
Sbjct: 166 YQQEYSRGHIVSDLKV----VGESDKTGTVVNFVADPEIFTDTTDYDFQTLNKRVRELAF 221
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L I L ED E +Q Y + GG++EYVQ+LN +K+ L + V +D I +
Sbjct: 222 LNKGLHITL--EDRREEDSQEVAYQYEGGIKEYVQYLNENKEILFEEPVYLEGQMDDIEV 279
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A Q+ + Y + +AN+I T +GGTH G+K +LTRT+N + +K+KD +LS
Sbjct: 280 EVAFQYTA-GYHSNFMSFANNIHTFEGGTHESGIKTALTRTINDYARSQNLLKEKDDNLS 338
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT I+S+R PNP+FEGQTK +LGN EVR + D+ ++L ++L P++ I
Sbjct: 339 GEDVREGLTLIVSIRHPNPQFEGQTKMKLGNSEVRTITDRLFGQHLEQFLYETPNIARQI 398
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA AAKRAR++ R+KS L S+LPGKLADCSS PEE E+FIVEG+SAGGS
Sbjct: 399 VDKGILASKARQAAKRAREMTRKKSGLEISNLPGKLADCSSRVPEECELFIVEGNSAGGS 458
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RYH
Sbjct: 459 AKLGRDRHFQAILPIRGKILNVEKASMDRILANEEIRSLFTAMGTGW-GNDFDVTKARYH 517
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLT YRY + L D G IY+ VPPLY+V +GK V Y D E
Sbjct: 518 KLVIMTDADVDGAHIRTLLLTLIYRYMRPLLDAGYIYIAVPPLYQVRQGKNVHYVNSDQE 577
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + ++QR+KGLGEM QLWETT++P QR + Q+ ++DA EA+ S L
Sbjct: 578 LNDYMKTLAERPRPAVQRYKGLGEMDAEQLWETTMDPTQRQMLQVTVDDAQEADRNISML 637
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V R++ I+N A +D
Sbjct: 638 MGDLVAPRRDFIENNATYATID 659
>gi|145577961|gb|ABP82699.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar finitimus]
gi|145578027|gb|ABP82732.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar poloniensis]
Length = 632
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 247/505 (48%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y++
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKIQQGKKIQYAYNE 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|42779086|ref|NP_976333.1| DNA gyrase subunit B [Bacillus cereus ATCC 10987]
gi|384177915|ref|YP_005563677.1| DNA gyrase subunit B [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|402554403|ref|YP_006595674.1| DNA gyrase subunit B [Bacillus cereus FRI-35]
gi|42735001|gb|AAS38941.1| DNA gyrase, B subunit [Bacillus cereus ATCC 10987]
gi|324323999|gb|ADY19259.1| DNA gyrase subunit B [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|401795613|gb|AFQ09472.1| DNA gyrase subunit B [Bacillus cereus FRI-35]
Length = 640
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 247/505 (48%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y++
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKIQQGKKIQYAYNE 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>gi|145577987|gb|ABP82712.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar wratislaviensis]
Length = 632
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 248/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWET ++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETAMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|217076995|ref|YP_002334711.1| DNA gyrase B subunit [Thermosipho africanus TCF52B]
gi|419759567|ref|ZP_14285861.1| DNA gyrase subunit B [Thermosipho africanus H17ap60334]
gi|217036848|gb|ACJ75370.1| DNA gyrase, B subunit [Thermosipho africanus TCF52B]
gi|407515387|gb|EKF50145.1| DNA gyrase subunit B [Thermosipho africanus H17ap60334]
Length = 627
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 248/492 (50%), Positives = 341/492 (69%), Gaps = 15/492 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG P TC V + +++GT +RF PD +F+T FD +TI R+RELAF
Sbjct: 138 YYQRYERGTP----TCEVKIIGETEKRGTTVRFKPDPLIFSTT-DFDTDTILMRLRELAF 192
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LNP +TI + E ++ E+ + + GG++E+V L+ K LH+ V + + I ++
Sbjct: 193 LNPNITIYFKDERNNTERT----FHYTGGIKEFVSHLSKGSKSLHEPVYISGEYEKIKVE 248
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
++ Q+ +D+ + + + N+IRT+DGGTH+ G K++ TR +N LG+K+ +K KD SL G
Sbjct: 249 VSFQY-TDSDFEKIYSFVNNIRTVDGGTHVTGFKSAFTRVVNELGRKTGQLK-KD-SLRG 305
Query: 183 EHVREGLTCIISVRVPN-PEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
+ VREG+ +ISV + + PEFEGQTK++LGN EV++ V + V+E L E+ E + + L I
Sbjct: 306 DDVREGMVAVISVLMSSTPEFEGQTKSKLGNEEVQEAVAKVVREKLLEFFETNENTLKII 365
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A KA AAK AR++V++KSV SSSLPGKLADC + EESE+FIVEGDSAGGS
Sbjct: 366 IQKALEAKKAREAAKHAREMVKRKSVFGSSSLPGKLADCITKKLEESELFIVEGDSAGGS 425
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQ RDR FQAILPLRGKILNVE+ + KNE+++++I ALG+G+ G+DF + LRY
Sbjct: 426 AKQARDRNFQAILPLRGKILNVEKSSWLKLLKNEQVRDIITALGVGI-GDDFDIKKLRYG 484
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLT FYRY K L +EG IY+ PPLYK+ GK Y Y D E
Sbjct: 485 KIIIMTDADVDGAHIRTLLLTLFYRYMKELIEEGRIYIAQPPLYKLTVGKDHYYFYSDEE 544
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ K + Y IQR+KGLGEM P QLWETT++P R L ++ IEDA A+ +F L
Sbjct: 545 LEDFKKTLEDKK-YEIQRYKGLGEMNPEQLWETTMDPNTRKLLKVSIEDAETADELFEML 603
Query: 482 MGARVDTRKELI 493
MG+ ++RKE I
Sbjct: 604 MGSDTESRKEFI 615
>gi|145578001|gb|ABP82719.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar shandongiensis]
Length = 632
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 248/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P S I+IVEGDSAG
Sbjct: 369 KVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISGIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLGKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|145577981|gb|ABP82709.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar seoulensis]
Length = 632
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 248/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
G AKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GCAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|147921290|ref|YP_684896.1| type II DNA topoisomerase II (gyrase), subunit B [Methanocella
arvoryzae MRE50]
gi|110620292|emb|CAJ35570.1| type II DNA topoisomerase II (gyrase), subunit B [Methanocella
arvoryzae MRE50]
Length = 635
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/503 (48%), Positives = 347/503 (68%), Gaps = 15/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y +GKPV C V + D+ GT+ F PDK +F T ++F + +A R+RELA+
Sbjct: 145 FFQRYEKGKPV----CEVKIIGETDQTGTKTTFKPDKSIFET-VEFQFDILANRLRELAY 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I L SD + EY + GG+ +++++LN DK LH + F ++ D +
Sbjct: 200 LNKGIRITL----SDLGAQKSAEYHYEGGINQFIEYLNQDKTVLHPKPIYFEREKDTTKV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ +D YS+ +L +AN+I T +GGTH+ G +A+LTRT+N +K+ +K D+ LS
Sbjct: 256 EISMQY-NDGYSEVILAFANNINTHEGGTHLSGFRAALTRTVNDYARKNNMLKG-DMVLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT IISV++ NP+FEGQTKT+LGN +V+ +V+ V + L +YLE +P I
Sbjct: 314 GEDIREGLTAIISVKLTNPQFEGQTKTKLGNSDVKGIVESLVGDGLNDYLEENPADARKI 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ A +A AA++AR+L R+KS L S+LPGKLADCS + E++IVEGDSAGGS
Sbjct: 374 IEKTVQAFQAREAARKARELTRRKSALEGSTLPGKLADCSEKDASKCELYIVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILPLRGKILNVE+ + ++ EI+ LI ALG GV GEDF + RYH
Sbjct: 434 AKQGRNRLFQAILPLRGKILNVEKARLNKILESAEIRALITALGTGV-GEDFVLDKARYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KII++TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLY++++GK+ +Y Y D E
Sbjct: 493 KIILMTDADVDGAHIRTLLLTFFYRYMQQIVEAGFVYIAQPPLYRIKKGKEEKYVYSDRE 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + + + SIQR+KGLGEM P QLW TT++P R + Q+ +ED EA+ F+ L
Sbjct: 553 LNEALEAMGRTNV-SIQRYKGLGEMNPEQLWSTTMDPATRTMYQVKLEDVIEADRTFTLL 611
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V+ R+E I +NA + NLD
Sbjct: 612 MGDKVEPRREFIVKNAKFVKNLD 634
>gi|392423465|ref|YP_006464459.1| DNA gyrase subunit B [Desulfosporosinus acidiphilus SJ4]
gi|391353428|gb|AFM39127.1| DNA gyrase subunit B [Desulfosporosinus acidiphilus SJ4]
Length = 644
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/503 (48%), Positives = 351/503 (69%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ+Y++GKP T L L + + + GT+I F PD ++F + +D++ +A R+REL+F
Sbjct: 153 YHQEYAKGKPTTDL----LDIGTTEGTGTKITFMPDPEIFEDTV-YDYDILAHRLRELSF 207
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I L+ E SD ++ +F GG++++V +LN K LH + + DG+ +
Sbjct: 208 LNKSVKINLKDERSDIQET----FFHTGGIQDFVLYLNKTKDCLHPQPIFIETNKDGVQV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ +Q+ +D+Y++ + YAN+I T +GGTH G K++LTR +N +K+ +K D +LS
Sbjct: 264 EVCMQY-NDSYTENLYSYANNINTQEGGTHEAGFKSALTRVINDYARKNNILKSSDSNLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT ++SV+VP+P+FEGQTKT+LGN E+R +VD S E L+ +LE +P V
Sbjct: 323 GDDIREGLTAVVSVKVPDPQFEGQTKTKLGNSEIRGIVDSSTGEGLSTFLEENPTVTRKF 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KSL A +A AA++AR+L R+KS L +SLPGKLADCS P+ E++IVEGDSAGGS
Sbjct: 383 IEKSLQAARARDAARKARELTRRKSALEGTSLPGKLADCSWKEPDLCEMYIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILNVE+ + N EI+ +I A+G G+ +DF RY+
Sbjct: 443 AKQGRDRRFQAILPLRGKILNVEKARLDKILANAEIRAMITAMGTGIS-DDFDISKARYN 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLTFFYRY K L + +Y+ PPL+KV++G+ +QY Y DAE
Sbjct: 502 KLIIMTDADVDGAHIRTLLLTFFYRYMKPLLENNYVYIAQPPLFKVKKGRDIQYAYSDAE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+ + + IQR+KGLGEM P QLWETT++P +R + Q+ IEDA + +FS L
Sbjct: 562 LNKILDTIGREKV-EIQRYKGLGEMNPEQLWETTMDPAKRTILQVTIEDALRSEDMFSVL 620
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+E IQ +A ++ NLD
Sbjct: 621 MGDKVEPRREFIQRHAKDVRNLD 643
>gi|222093779|ref|YP_002527826.1| DNA gyrase subunit b [Bacillus cereus Q1]
gi|221237824|gb|ACM10534.1| DNA gyrase, B subunit [Bacillus cereus Q1]
Length = 640
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 247/505 (48%), Positives = 344/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y++
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKIQQGKKIQYAYNE 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELEKILDELPAQPKPGIQRYKGLGEMNPAQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>gi|16077074|ref|NP_387887.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. 168]
gi|221307815|ref|ZP_03589662.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. 168]
gi|221312137|ref|ZP_03593942.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. NCIB
3610]
gi|221317070|ref|ZP_03598364.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. JH642]
gi|221321333|ref|ZP_03602627.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. SMY]
gi|321313673|ref|YP_004205960.1| DNA gyrase subunit B [Bacillus subtilis BSn5]
gi|402774249|ref|YP_006628193.1| DNA gyrase subunit B [Bacillus subtilis QB928]
gi|418030644|ref|ZP_12669129.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. SC-8]
gi|428277418|ref|YP_005559153.1| DNA gyrase subunit B [Bacillus subtilis subsp. natto BEST195]
gi|449092720|ref|YP_007425211.1| DNA gyrase subunit B [Bacillus subtilis XF-1]
gi|452912985|ref|ZP_21961613.1| DNA gyrase, B subunit [Bacillus subtilis MB73/2]
gi|121887|sp|P05652.1|GYRB_BACSU RecName: Full=DNA gyrase subunit B
gi|40018|emb|CAA26221.1| unnamed protein product [Bacillus subtilis]
gi|467396|dbj|BAA05242.1| B subunit of DNA gyrase [Bacillus subtilis]
gi|2632273|emb|CAB11782.1| DNA gyrase (subunit B) [Bacillus subtilis subsp. subtilis str. 168]
gi|291482375|dbj|BAI83450.1| DNA gyrase subunit B [Bacillus subtilis subsp. natto BEST195]
gi|320019947|gb|ADV94933.1| DNA gyrase subunit B [Bacillus subtilis BSn5]
gi|351471703|gb|EHA31816.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. SC-8]
gi|402479435|gb|AFQ55944.1| DNA gyrase (subunit B) [Bacillus subtilis QB928]
gi|407955697|dbj|BAM48937.1| DNA gyrase subunit B [Bacillus subtilis BEST7613]
gi|449026635|gb|AGE61874.1| DNA gyrase subunit B [Bacillus subtilis XF-1]
gi|452118013|gb|EME08407.1| DNA gyrase, B subunit [Bacillus subtilis MB73/2]
Length = 638
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/503 (48%), Positives = 340/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG PVT L + D GT F PD ++F+ ++D++ +A R+RELAF
Sbjct: 143 HRQTYKRGVPVTDLEI----IGETDHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 199 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N +K +K+ D +LS
Sbjct: 257 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D + ++ +PD I
Sbjct: 316 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 376 VDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 436 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D E
Sbjct: 495 KVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ + P +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 555 LEELLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEML 614
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 615 MGDKVEPRRNFIEANARYVKNLD 637
>gi|403068971|ref|ZP_10910303.1| DNA gyrase subunit B [Oceanobacillus sp. Ndiop]
Length = 641
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 241/502 (48%), Positives = 336/502 (66%), Gaps = 10/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y +++G P+ + V D GT F PD ++FT ++ T+ R+RELAF
Sbjct: 148 YFLGFAKGVPLGEIEV----VGETDITGTVTHFTPDPEIFTETTDYNFETLEQRLRELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN LTI + + +D E Y ++ GG+ YV+++N +K+ LH+ + GI ++
Sbjct: 204 LNKGLTITIEDKRTDREPVTY---YYEGGVSSYVEYINKNKEVLHEPFYAEGEDKGIAVE 260
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+A+Q+ +D +S + +AN+I T +GG H G ++ LTR +N +K+ +K+ + +LSG
Sbjct: 261 VAIQY-NDGFSSNLFSFANNIHTYEGGAHEVGFRSGLTRVINDYARKNNLIKENETNLSG 319
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+ VREG+T I+SV+ P+P+FEGQTKT+LGN EVR + D E +++L +P I+
Sbjct: 320 DDVREGMTAIVSVKHPDPQFEGQTKTKLGNSEVRTITDSVFSELFSKFLYENPTTARIIV 379
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K L A +A LAAK+AR+L R+KS L SSLPGKLADCSS SE++IVEG+SAGGSA
Sbjct: 380 DKGLMASRARLAAKKARELTRRKSALEISSLPGKLADCSSKDATISELYIVEGNSAGGSA 439
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
K GRDR FQAILPLRGKILNVE+ + N EI+++I ALG GV G+DF RYHK
Sbjct: 440 KSGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRSMITALGTGV-GDDFDISKARYHK 498
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
I+I+TDADVDGAHIRTLLLTFF+RY + L D G IY+ PPL++V++GK VQY YDD EL
Sbjct: 499 IVIMTDADVDGAHIRTLLLTFFFRYMRPLIDNGYIYIAQPPLFQVKQGKSVQYVYDDKEL 558
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
+V + P+ +IQR+KGLGEM QLWETT++PE+R L Q+ + DA EA+ VF LM
Sbjct: 559 TRVLAEVPATPKPAIQRYKGLGEMDAEQLWETTMDPEKRTLLQVELSDAIEADQVFDMLM 618
Query: 483 GARVDTRKELI-QNAANLVNLD 503
G +V+ R+ I +NA + NLD
Sbjct: 619 GDKVEPRRNYIEENAKYVQNLD 640
>gi|407962968|dbj|BAM56207.1| DNA gyrase subunit B [Bacillus subtilis BEST7003]
Length = 640
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/503 (48%), Positives = 340/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG PVT L + D GT F PD ++F+ ++D++ +A R+RELAF
Sbjct: 145 HRQTYKRGVPVTDLEI----IGETDHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 201 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N +K +K+ D +LS
Sbjct: 259 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLS 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D + ++ +PD I
Sbjct: 318 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 378 VDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 438 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D E
Sbjct: 497 KVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKE 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ + P +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 557 LEELLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEML 616
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 617 MGDKVEPRRNFIEANARYVKNLD 639
>gi|56961788|ref|YP_173510.1| DNA gyrase subunit B [Bacillus clausii KSM-K16]
gi|56908022|dbj|BAD62549.1| DNA gyrase subunit B [Bacillus clausii KSM-K16]
Length = 641
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/504 (48%), Positives = 332/504 (65%), Gaps = 11/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q YSRG P LT + D+ GT I F PD ++F ++FD+ T+A RIRELAF
Sbjct: 145 HSQSYSRGVPDADLTV----IGETDKTGTTITFQPDPEIFRETVEFDYETLAARIRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN LTI + ED E + Y + GG+ +V+ LN K+ LH+ + + DGI++
Sbjct: 201 LNKGLTIKI--EDKRTEDGKKATYHYEGGISSFVKHLNRSKETLHEEPIYVESEKDGISV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D ++ ++ +AN+I T +GGTH G K LTR +N +K+ K+ D +LS
Sbjct: 259 EVAVQY-NDGFTSSIYSFANNINTHEGGTHESGFKTGLTRVINDYARKNGLFKENDPNLS 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IISV++P P+FEGQTKT+LGN E R + D E +L +P V I
Sbjct: 318 GEDVREGLTAIISVKIPEPQFEGQTKTKLGNSEARTITDSLFSESFARFLSENPGVARKI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A AAK+AR+L R+KS L SSLPGKL DC+S SE+FIVEGDSAGGS
Sbjct: 378 VDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLTDCTSKDASISELFIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRD FQAILPLRGKILNVE+ + N EI+ +I A+G G+ G++F RYH
Sbjct: 438 AKGGRDPHFQAILPLRGKILNVEKARLDKILANNEIRMIITAIGTGI-GDEFDISKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK-QVQYCYDDA 420
KI+I+TDADVDGAHIRTL+LTFFYRY + L + G +Y+ PPLYK+E+GK V Y Y D
Sbjct: 497 KIVIMTDADVDGAHIRTLILTFFYRYMRELLENGYVYIAQPPLYKIEQGKNNVTYVYSDR 556
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL ++ + S+QR+KGLGEM QLWETT++P+ R + Q+ + DA +A+ +F
Sbjct: 557 ELDAHLATVADRSKVSVQRYKGLGEMNAGQLWETTMDPQVRNMLQVTLADAIKADEIFEI 616
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG RV+ R++ IQ A+ V NLD
Sbjct: 617 LMGDRVEPRRDFIQENAHYVKNLD 640
>gi|432331601|ref|YP_007249744.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
subunit [Methanoregula formicicum SMSP]
gi|432138310|gb|AGB03237.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
subunit [Methanoregula formicicum SMSP]
Length = 694
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 243/479 (50%), Positives = 332/479 (69%), Gaps = 13/479 (2%)
Query: 30 GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA 89
GTRI F PD +F T FD++T+A R+RELAFLN LTI + +D Y +A
Sbjct: 223 GTRIHFVPDATIFETTT-FDYDTLAHRLRELAFLNAGLTIII----TDERTGDSATYCYA 277
Query: 90 GGLEEYVQWLNTDKKPLHD--VVGFRKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTI 146
GGL E+V++LN + LH + +KD + + I++A+Q+ + Y + + Y NS+ T
Sbjct: 278 GGLSEFVKYLNEGAECLHPTPIDMTKKDPENKLEIEVAMQYTT-GYDEKIFSYVNSVNTR 336
Query: 147 DGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGEHVREGLTCIISVRVPNPEFEGQ 205
+GGTH+EG ++++TR +N++ KK+ +K+ I+L GE VREGLT ++SV++ NP+FEGQ
Sbjct: 337 EGGTHLEGFRSAITRAINTVAKKNGVIKENSTITLRGEDVREGLTSVVSVKMANPQFEGQ 396
Query: 206 TKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQK 265
TK RLGN V+ +VD V L+EY + +P+ L I+ K+LSA KA AA+ AR+L R+K
Sbjct: 397 TKMRLGNSSVKGIVDSLVYAALSEYFDENPNTLKIIVEKALSAAKAREAARNARELARRK 456
Query: 266 SVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVER 325
S L S LPGKLADCS P +SEI+IVEGDSAGGSAK GRDR+FQAILPLRGKILNVE+
Sbjct: 457 STLESGGLPGKLADCSERDPAKSEIYIVEGDSAGGSAKGGRDRKFQAILPLRGKILNVEK 516
Query: 326 KDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFY 385
E + KN EIQ LI A+G G+ GE F E RYH I+I+TDADVDGAHIRTLLLTFFY
Sbjct: 517 AGEHQILKNAEIQTLISAIGTGI-GEKFDAERARYHHIVIMTDADVDGAHIRTLLLTFFY 575
Query: 386 RYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGE 445
RY L + G +Y+ PPL++V +GK +Y Y + E++KV ++ + S+QR+KGLGE
Sbjct: 576 RYMPKLIELGYVYIAQPPLFRVWKGKDEKYVYKEEEMQKVSAAMGEKGV-SVQRYKGLGE 634
Query: 446 MMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKE-LIQNAANLVNLD 503
M QLW+TT++P R+ Q+ IEDA EAN +F +LMG V+ RK +I++A + NLD
Sbjct: 635 MNAQQLWDTTMDPAHRIFLQVTIEDAMEANEIFKTLMGKDVEIRKNFIIRHAKEVTNLD 693
>gi|145577985|gb|ABP82711.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar thompsoni]
Length = 632
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 248/505 (49%), Positives = 344/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++L + ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLSY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|190710551|gb|ACE95106.1| gyrase subunit B [Bacillus thuringiensis serovar sotto]
gi|190710565|gb|ACE95113.1| gyrase subunit B [Bacillus thuringiensis serovar sumiyoshiensis]
gi|190710591|gb|ACE95126.1| gyrase subunit B [Bacillus thuringiensis serovar sotto]
Length = 627
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 246/498 (49%), Positives = 341/498 (68%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQENA 625
>gi|430756787|ref|YP_007211252.1| DNA gyrase protein GyrA (subunit B) [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|430021307|gb|AGA21913.1| DNA gyrase protein GyrA (subunit B) [Bacillus subtilis subsp.
subtilis str. BSP1]
Length = 643
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/503 (48%), Positives = 340/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG PVT L + D GT F PD ++F+ ++D++ +A R+RELAF
Sbjct: 148 HRQTYKRGVPVTDLEI----IGETDHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 204 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N +K +K+ D +LS
Sbjct: 262 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLS 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D + ++ +PD I
Sbjct: 321 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 381 VDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 441 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D E
Sbjct: 500 KVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKE 559
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ + P +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 560 LEELLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEML 619
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 620 MGDKVEPRRNFIEVNARYVKNLD 642
>gi|190710611|gb|ACE95136.1| gyrase subunit B [Bacillus thuringiensis serovar morrisoni]
Length = 627
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 246/498 (49%), Positives = 341/498 (68%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKA----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQENA 625
>gi|145577975|gb|ABP82706.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar entomocidus]
Length = 632
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 248/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E +R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKVR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++ A EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQGAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|319936688|ref|ZP_08011101.1| DNA gyrase subunit B [Coprobacillus sp. 29_1]
gi|319808245|gb|EFW04810.1| DNA gyrase subunit B [Coprobacillus sp. 29_1]
Length = 640
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 338/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGK-PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
Y+Q++ +G PV L + D GT + F D +F +D++T+ RIRELA
Sbjct: 145 YYQRFEKGGVPVGDLKI----IGDCDDTGTIVSFKADPLIFNETTIYDYDTLNQRIRELA 200
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKD-VDGIT 120
FLN L + L ++P K NEY + GG++EYV +LN +K +H+ + + +D +D I
Sbjct: 201 FLNKGLKLILEDHRNEPYKK--NEYHYEGGIKEYVAYLNRNKTAIHEEIIYVEDEIDDIK 258
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++ +Q+ +D Y + + N+I T +GGTH EG + +LTR +N+ K + +K D SL
Sbjct: 259 VEVGMQY-NDGYQPNIYSFCNNINTHEGGTHEEGFRLALTRVINNYAKNNNFLKKDDESL 317
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
+G+ REGLT IISV+ P+P++EGQTKT+LGN EVRK+ + E L ++L +PD
Sbjct: 318 NGDDCREGLTAIISVKHPDPQYEGQTKTKLGNSEVRKIASNIISEALDKFLLENPDTASI 377
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I++K++ A A +AAKRAR++ R+K+ L S +LPGKLADCSS P E E+FIVEGDSAGG
Sbjct: 378 IMNKAIVASHARMAAKRAREMTRRKTALDSIALPGKLADCSSKDPSECEVFIVEGDSAGG 437
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GRDRR QAILPLRGKILNVE+ + N EI+++I A G G+ G++F LRY
Sbjct: 438 SAKMGRDRRTQAILPLRGKILNVEKARLDRILGNAEIRSMITAFGTGI-GDEFDISKLRY 496
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKI+I+TDADVDG HIR L+LTF YR+ K L +EG +Y PPLY ++ GK+ Y Y D
Sbjct: 497 HKIVIMTDADVDGGHIRILMLTFLYRFLKPLIEEGFVYAAQPPLYLLKHGKEEHYLYSDY 556
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+K+K NA Y+IQR+KGLGEM QLWETT++PE R+L Q+ ++DA +A+ +F +
Sbjct: 557 ELEKLKEDLGPNAKYNIQRYKGLGEMNAEQLWETTMDPENRLLWQIDLDDAMQADAMFDT 616
Query: 481 LMGARVDTRKELIQNAANLVNLD 503
LMG +V+ R+E IQ A LD
Sbjct: 617 LMGEKVEPRREFIQEHAQEAELD 639
>gi|190710567|gb|ACE95114.1| gyrase subunit B [Bacillus thuringiensis serovar toumanoffi]
Length = 627
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 246/498 (49%), Positives = 341/498 (68%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSETFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQENA 625
>gi|190710569|gb|ACE95115.1| gyrase subunit B [Bacillus thuringiensis serovar alesti]
Length = 627
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 246/498 (49%), Positives = 341/498 (68%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQENA 625
>gi|145577963|gb|ABP82700.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar finitimus]
Length = 632
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 247/505 (48%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y++
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKIQQGKKIQYAYNE 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENARYVKNLD 632
>gi|190710589|gb|ACE95125.1| gyrase subunit B [Bacillus thuringiensis serovar darmstadiensis]
Length = 627
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 246/498 (49%), Positives = 341/498 (68%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYANHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQENA 625
>gi|15893304|ref|NP_346653.1| DNA gyrase subunit B [Clostridium acetobutylicum ATCC 824]
gi|337735215|ref|YP_004634662.1| DNA gyrase subunit B [Clostridium acetobutylicum DSM 1731]
gi|384456724|ref|YP_005669144.1| DNA gyrase subunit B [Clostridium acetobutylicum EA 2018]
gi|18273027|sp|P94604.2|GYRB_CLOAB RecName: Full=DNA gyrase subunit B
gi|15022823|gb|AAK77993.1|AE007513_6 DNA gyrase (topoisomerase II) B subunit [Clostridium acetobutylicum
ATCC 824]
gi|325507413|gb|ADZ19049.1| DNA gyrase subunit B [Clostridium acetobutylicum EA 2018]
gi|336292832|gb|AEI33966.1| DNA gyrase subunit B [Clostridium acetobutylicum DSM 1731]
Length = 637
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 248/506 (49%), Positives = 345/506 (68%), Gaps = 17/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RGK + + D GT+I F PD ++F ++D++T++ R+RELAF
Sbjct: 143 WKQTYHRGKVASPFE----KIGDSDEHGTKIYFKPDPEIFEDT-EYDYDTLSQRLRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPL-HDVVGFRKDVD-GI 119
LN + I L E D NE F + GGL+ +V +LN +K+ + + + +D
Sbjct: 198 LNKGIKIELTDERHDK-----NEIFHYEGGLKSFVSYLNRNKEVVFKEPIYVEGSIDSNY 252
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++ALQ+ +D Y++ + +AN+I TI+GGTH+ G K +LTR +N KK +K+ D +
Sbjct: 253 SVEIALQY-NDGYNENIFSFANNIHTIEGGTHLAGFKTALTRVINDYAKKFGYLKENDKN 311
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSGE +REGLT ++SV++ P+FEGQTKT+LGN EVR +VD + E ++ YLE +P +
Sbjct: 312 LSGEDIREGLTAVVSVKLTEPQFEGQTKTKLGNTEVRGIVDSIISERVSTYLEENPQIGK 371
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K+L A +A AAK+AR++ R+KSVL S+SLPGKLADCSS EE EI+IVEGDSAG
Sbjct: 372 LVIDKALVASRAREAAKKAREITRRKSVLESTSLPGKLADCSSKDAEECEIYIVEGDSAG 431
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGR+RRFQAILPLRGKI+NVE++ + +EEI+ + A G G+ G+DF LR
Sbjct: 432 GSAKQGRNRRFQAILPLRGKIMNVEKQRIDKILNSEEIKAMATAFGGGI-GKDFDVSKLR 490
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHKIII+TDADVDGAHIRTL+LTFFYRY L EG +++ PPLYKV + ++ Y Y D
Sbjct: 491 YHKIIIMTDADVDGAHIRTLILTFFYRYMTELISEGHVFIAQPPLYKVTKTRKEYYAYSD 550
Query: 420 AELKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
EL+ V + IQR+KGLGEM P QLWETT+NPEQR L ++ IEDA A+ +F
Sbjct: 551 KELEDVLQDVGGKDKNTDIQRYKGLGEMNPEQLWETTMNPEQRTLIKVNIEDAMAADEIF 610
Query: 479 SSLMGARVDTRKELI-QNAANLVNLD 503
+ LMG +VD R++ I +NA +VNLD
Sbjct: 611 TILMGDKVDPRRKFIEENATKVVNLD 636
>gi|319648524|ref|ZP_08002740.1| DNA gyrase subunit B [Bacillus sp. BT1B_CT2]
gi|404487367|ref|YP_006711473.1| DNA gyrase subunit B [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52346363|gb|AAU38997.1| DNA gyrase beta subunit GyrB [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|317389603|gb|EFV70414.1| DNA gyrase subunit B [Bacillus sp. BT1B_CT2]
Length = 637
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 244/503 (48%), Positives = 344/503 (68%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q++ RG P L + + GT F PD ++FT ++D++T+A R+RELAF
Sbjct: 142 HYQEFERGVPKADLKV----IGDTEVTGTTTHFKPDPEIFTETTEYDYDTLATRVRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED K + NEY + GG++ YV+ LN ++ +H+ V DGIT+
Sbjct: 198 LTKGVKITI--EDKREGKERKNEYCYEGGIKSYVEHLNRSREVIHEEPVYIEGSKDGITV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + +AN+I T +GGTH G K LTR +N +++ K+ D +LS
Sbjct: 256 EVALQY-NDSYTSNIYSFANNIHTYEGGTHEAGFKTGLTRVINDYARRNGVFKESDPNLS 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IIS++ P+P+FEGQTKT+LGN E R + D E L ++L +PD I
Sbjct: 315 GEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDALFSEALEKFLLENPDSAKKI 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 375 VEKGVMAARARMAAKKARELTRRKSALEVSNLPGKLADCSSKDPTISELYIVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 435 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 493
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + ++G +Y+ PPLYKV++GK+V+Y Y+D +
Sbjct: 494 KVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEQGYVYIAQPPLYKVQQGKRVEYAYNDQQ 553
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ P N +QR+KGLGEM QLWETT++PE R L Q+ ++DA +A+ F L
Sbjct: 554 LEEILKELPQNPKPGLQRYKGLGEMNATQLWETTMDPETRTLLQVTLKDAIDADETFEML 613
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V+ R+ I +NA + NLD
Sbjct: 614 MGDKVEPRRNFIEENARYVKNLD 636
>gi|1790875|gb|AAB41130.1| DNA gyrase subunit B [Clostridium acetobutylicum ATCC 824]
Length = 637
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 248/506 (49%), Positives = 345/506 (68%), Gaps = 17/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RGK + + D GT+I F PD ++F ++D++T++ R+RELAF
Sbjct: 143 WKQTYHRGKVASPFE----KIGDSDEHGTKIYFKPDPEIFEDT-EYDYDTLSQRLRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPL-HDVVGFRKDVD-GI 119
LN + I L E D NE F + GGL+ +V +LN +K+ + + + +D
Sbjct: 198 LNKGIKIELTDERHDK-----NEIFHYEGGLKSFVSYLNRNKEVVFKEPIYVEGSIDSNY 252
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++ALQ+ +D Y++ + +AN+I TI+GGTH+ G K +LTR +N KK +K+ D +
Sbjct: 253 SVEIALQY-NDGYNENIFSFANNIHTIEGGTHLAGFKTALTRVINDYAKKFGYLKENDKN 311
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSGE +REGLT ++SV++ P+FEGQTKT+LGN EVR +VD + E ++ YLE +P +
Sbjct: 312 LSGEDIREGLTAVVSVKLTEPQFEGQTKTKLGNTEVRGIVDSIISERVSTYLEENPQIGK 371
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K+L A +A AAK+AR++ R+KSVL S+SLPGKLADCSS EE EI+IVEGDSAG
Sbjct: 372 LVIDKALVASRAREAAKKAREITRRKSVLESTSLPGKLADCSSKDAEECEIYIVEGDSAG 431
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGR+RRFQAILPLRGKI+NVE++ + +EEI+ + A G G+ G+DF LR
Sbjct: 432 GSAKQGRNRRFQAILPLRGKIMNVEKQRIDKILNSEEIKAMATAFGGGI-GKDFDVSKLR 490
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHKIII+TDADVDGAHIRTL+LTFFYRY L EG +++ PPLYKV + ++ Y Y D
Sbjct: 491 YHKIIIMTDADVDGAHIRTLILTFFYRYMTELISEGHVFIAQPPLYKVTKTRKEYYAYSD 550
Query: 420 AELKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
EL+ V + IQR+KGLGEM P QLWETT+NPEQR L ++ IEDA A+ +F
Sbjct: 551 KELEDVLQDVGGKDKNTDIQRYKGLGEMNPEQLWETTMNPEQRTLIKVNIEDAMAADEIF 610
Query: 479 SSLMGARVDTRKELI-QNAANLVNLD 503
+ LMG +VD R++ I +NA +VNLD
Sbjct: 611 TILMGDKVDPRRKFIEENATKVVNLD 636
>gi|190710577|gb|ACE95119.1| gyrase subunit B [Bacillus thuringiensis serovar kenyae]
Length = 627
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/498 (49%), Positives = 340/498 (68%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQENA 625
>gi|379794532|ref|YP_005324530.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356871522|emb|CCE57861.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 644
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 252/502 (50%), Positives = 338/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTIYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D + + + Y + GG++ YV+ LN K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEDNIREDSYHYEGGIKSYVELLNEKKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K+ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEDKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LEKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|190710597|gb|ACE95129.1| gyrase subunit B [Bacillus thuringiensis serovar morrisoni]
Length = 627
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 246/497 (49%), Positives = 340/497 (68%), Gaps = 14/497 (2%)
Query: 4 HQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFL 63
+QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAFL
Sbjct: 140 YQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAFL 195
Query: 64 NP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
N KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 196 NRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ 250
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +L
Sbjct: 251 VEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNL 309
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 310 TGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARK 369
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAGG
Sbjct: 370 IVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGG 429
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E RY
Sbjct: 430 SAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKARY 488
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 489 HKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNDK 548
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 549 ELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEI 608
Query: 481 LMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 609 LMGDKVEPRRNFIQENA 625
>gi|190710587|gb|ACE95124.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae]
Length = 627
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/498 (49%), Positives = 340/498 (68%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGNIYIAQPPLFKIQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQENA 625
>gi|190710557|gb|ACE95109.1| gyrase subunit B [Bacillus thuringiensis serovar londrina]
gi|190710571|gb|ACE95116.1| gyrase subunit B [Bacillus thuringiensis serovar kurstaki]
gi|190710573|gb|ACE95117.1| gyrase subunit B [Bacillus thuringiensis serovar kurstaki]
gi|190710579|gb|ACE95120.1| gyrase subunit B [Bacillus thuringiensis serovar canadensis]
gi|190710583|gb|ACE95122.1| gyrase subunit B [Bacillus thuringiensis serovar jegathesan]
gi|190710585|gb|ACE95123.1| gyrase subunit B [Bacillus thuringiensis serovar yosoo]
gi|190710593|gb|ACE95127.1| gyrase subunit B [Bacillus thuringiensis serovar kurstaki]
gi|190710599|gb|ACE95130.1| gyrase subunit B [Bacillus thuringiensis serovar yunnanensis]
gi|190710603|gb|ACE95132.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae]
gi|190710607|gb|ACE95134.1| gyrase subunit B [Bacillus thuringiensis serovar kumamotoensis]
gi|190710613|gb|ACE95137.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae]
Length = 627
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/498 (49%), Positives = 340/498 (68%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQENA 625
>gi|190710549|gb|ACE95105.1| gyrase subunit B [Bacillus thuringiensis serovar kenyae]
Length = 627
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/498 (49%), Positives = 340/498 (68%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQENA 625
>gi|350264106|ref|YP_004875413.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349596993|gb|AEP84781.1| DNA gyrase, B subunit [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 638
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/503 (48%), Positives = 339/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG PV+ L + D GT F PD ++FT ++D++ +A R+RELAF
Sbjct: 143 HRQTYKRGVPVSDLEI----IGETDHTGTTTHFVPDPEIFTETTEYDYDLLANRVRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 199 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N +K +K+ D +LS
Sbjct: 257 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D + ++ +PD I
Sbjct: 316 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 376 VDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 436 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D E
Sbjct: 495 KVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ + + P +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 555 LEDLLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEML 614
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 615 MGDKVEPRRNFIEANARYVKNLD 637
>gi|190710553|gb|ACE95107.1| gyrase subunit B [Bacillus thuringiensis serovar kyushuensis]
Length = 627
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/498 (49%), Positives = 341/498 (68%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQENA 625
>gi|190710581|gb|ACE95121.1| gyrase subunit B [Bacillus thuringiensis serovar sotto]
Length = 627
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 246/498 (49%), Positives = 341/498 (68%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNSIQENA 625
>gi|312878944|ref|ZP_07738744.1| DNA gyrase subunit B [Aminomonas paucivorans DSM 12260]
gi|310782235|gb|EFQ22633.1| DNA gyrase subunit B [Aminomonas paucivorans DSM 12260]
Length = 635
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 240/504 (47%), Positives = 342/504 (67%), Gaps = 13/504 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E+ Q++ RG VT L + DR+GT+++F PD+++F+T + F T+ GR+RELA
Sbjct: 142 EHRQRFERGAAVTELQTG----EDTDRRGTKVQFMPDEEIFST-LDFSSETLLGRLRELA 196
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGIT 120
FLNP +TI + DP ++ Y F GG+ + ++LN K+ L V R + D +
Sbjct: 197 FLNPGITIHFQDLRQDPILEKH--YHFEGGIASFAEYLNRGKEVLFKPPVVVRGEKDNVV 254
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+D+ALQ+ +D Y + + +AN I T++GGTH+ G + +LTR +N +K K +KDKD +
Sbjct: 255 VDVALQY-NDTYLERVFAFANLINTVEGGTHVSGFRTALTRAVNDQARKEKILKDKDPNF 313
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
+G+ ++EGLT ++SV++ P+FEGQTKT+LGN +V+ +VD V E L LE D+L
Sbjct: 314 TGDDLKEGLTAVVSVKLLEPQFEGQTKTKLGNGDVKGIVDSVVYEGLKALLEERADILKP 373
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
++ K++ A +A AAK+ARDLVR+KS + LPGKLADCS+ PEE E++IVEG+SAGG
Sbjct: 374 VVDKAVRARQAREAAKKARDLVRRKSAMSGLDLPGKLADCSNRNPEECEVYIVEGESAGG 433
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GR+R FQAILPLRGKILNVER + NE ++ +I+ALG GV G+DF LRY
Sbjct: 434 SAKMGRNRSFQAILPLRGKILNVERARLDKILSNEMVRTIIQALGCGV-GDDFDYAKLRY 492
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKI ++ DADVDGAHIRTLLLT F+RY + + G +YV PPLY+V+ GK V YC+ D
Sbjct: 493 HKIFLMADADVDGAHIRTLLLTLFFRYMPQIIENGHLYVAQPPLYRVQEGKTVHYCFSDK 552
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
ELK + ++ S+QR+KGLGEM P QLWETT++P R++K++ ++DA A+ +F
Sbjct: 553 ELKTLTDK--ASKRVSVQRYKGLGEMNPEQLWETTMDPANRIIKRVEVDDAVTADELFGI 610
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG V+ R+E I+ A V NLD
Sbjct: 611 LMGDAVEPRREFIETHAKEVRNLD 634
>gi|190710601|gb|ACE95131.1| gyrase subunit B [Bacillus thuringiensis serovar neoleonensis]
Length = 627
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/498 (49%), Positives = 341/498 (68%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQKNA 625
>gi|386756586|ref|YP_006229802.1| DNA topoisomerase IV subunit B [Bacillus sp. JS]
gi|384929868|gb|AFI26546.1| DNA topoisomerase IV subunit B [Bacillus sp. JS]
Length = 638
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/503 (48%), Positives = 339/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG PV+ L + D GT F PD ++FT ++D++ +A R+RELAF
Sbjct: 143 HRQTYKRGVPVSDLEI----IGETDHTGTTTHFVPDPEIFTETTEYDYDLLANRVRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 199 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N +K +K+ D +LS
Sbjct: 257 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D + ++ +PD I
Sbjct: 316 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSAAMETFMLENPDAAKKI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 376 VDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 436 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D E
Sbjct: 495 KVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ + + P +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 555 LEDLLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEML 614
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 615 MGDKVEPRRNFIEANARYVKNLD 637
>gi|52078497|ref|YP_077288.1| DNA gyrase subunit B [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423680393|ref|ZP_17655232.1| DNA gyrase subunit B [Bacillus licheniformis WX-02]
gi|52001708|gb|AAU21650.1| DNA gyrase (subunit B) [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|383441499|gb|EID49208.1| DNA gyrase subunit B [Bacillus licheniformis WX-02]
Length = 639
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 244/503 (48%), Positives = 344/503 (68%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q++ RG P L + + GT F PD ++FT ++D++T+A R+RELAF
Sbjct: 144 HYQEFERGVPKADLKV----IGDTEVTGTTTHFKPDPEIFTETTEYDYDTLATRVRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED K + NEY + GG++ YV+ LN ++ +H+ V DGIT+
Sbjct: 200 LTKGVKITI--EDKREGKERKNEYCYEGGIKSYVEHLNRSREVIHEEPVYIEGSKDGITV 257
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + +AN+I T +GGTH G K LTR +N +++ K+ D +LS
Sbjct: 258 EVALQY-NDSYTSNIYSFANNIHTYEGGTHEAGFKTGLTRVINDYARRNGVFKESDPNLS 316
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IIS++ P+P+FEGQTKT+LGN E R + D E L ++L +PD I
Sbjct: 317 GEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDALFSEALEKFLLENPDSAKKI 376
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 377 VEKGVMAARARMAAKKARELTRRKSALEVSNLPGKLADCSSKDPTISELYIVEGDSAGGS 436
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 437 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 495
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + ++G +Y+ PPLYKV++GK+V+Y Y+D +
Sbjct: 496 KVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEQGYVYIAQPPLYKVQQGKRVEYAYNDQQ 555
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ P N +QR+KGLGEM QLWETT++PE R L Q+ ++DA +A+ F L
Sbjct: 556 LEEILKELPQNPKPGLQRYKGLGEMNATQLWETTMDPETRTLLQVTLKDAIDADETFEML 615
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V+ R+ I +NA + NLD
Sbjct: 616 MGDKVEPRRNFIEENARYVKNLD 638
>gi|114565581|ref|YP_752735.1| DNA topoisomerase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114336516|gb|ABI67364.1| DNA gyrase subunit B [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 633
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 244/503 (48%), Positives = 346/503 (68%), Gaps = 13/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y RG PV + + GT I F+ D ++F I F+ + R+REL+F
Sbjct: 141 YQQDYERGNPVNEIRI----IGESKETGTSICFFADDEIFEE-INFEREILLQRLRELSF 195
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN L I+LR D E+ Y E+ ++ GL+++V ++N +K+ ++D + F D + +
Sbjct: 196 LNRNLKISLR--DEREEEVFYQEFHYSHGLKDFVAYINKNKEVINDNPIYFENKKDDVIV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+A+Q+ +++YS+ + +AN+IRT +GGTH G K +LTR +N KK+ +K+ D +LS
Sbjct: 254 QVAIQY-NNSYSENLYSFANNIRTQEGGTHEIGFKNALTRVINDYAKKNNILKENDNNLS 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REG+ IISV V +P+FEGQTKT+LGN +R +V+ V E++ +YL +P +
Sbjct: 313 GEDIREGIAAIISVLVKDPQFEGQTKTKLGNTYIRGIVESIVFEHVEDYLNENPAAARKL 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K++SA +A AAK+AR+L R+K+ L S++LPGKLADCS+ P ESE+FIVEGDSAGGS
Sbjct: 373 LDKAISARRAREAAKKARELTRRKNALESTALPGKLADCSNKNPAESELFIVEGDSAGGS 432
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR +QAILPLRGKILNVE+ + +EEI+NLI A+G G+ GEDF + RYH
Sbjct: 433 AKQGRDRTYQAILPLRGKILNVEKARLDRVLSSEEIRNLITAMGTGI-GEDFDIKKARYH 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+ I+TDADVDG+HIR LLLTFFYRY K L +EG +Y+ PPLY ++RGK+++Y Y+DA+
Sbjct: 492 KLFIMTDADVDGSHIRVLLLTFFYRYMKELIEEGYLYIAQPPLYGLKRGKEIKYFYNDAD 551
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L S + +SIQR+KGLGEM P QLW TT++ E R + ++ IEDA +AN +FS+L
Sbjct: 552 LNAFLSQ--TEQKWSIQRYKGLGEMDPEQLWTTTMDAESRTVLKVTIEDAIKANDIFSAL 609
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG V R+E I+ NA + NLD
Sbjct: 610 MGDNVQPRREFIESNARYVANLD 632
>gi|357039045|ref|ZP_09100840.1| DNA gyrase, B subunit [Desulfotomaculum gibsoniae DSM 7213]
gi|355358509|gb|EHG06275.1| DNA gyrase, B subunit [Desulfotomaculum gibsoniae DSM 7213]
Length = 633
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 341/502 (67%), Gaps = 13/502 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ++ RG VT+L + GT++ F PD ++F ++F +T+ R+REL+F
Sbjct: 143 YHQRFERGVSVTSLKT----IGKAKNTGTKVTFKPDPEIFE-ELEFSQDTLVQRLRELSF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
L + I E ++ Q Y +GG+ ++V +LN +K H V F D I ++
Sbjct: 198 LTKGVKITFIDERTE----QQCVYQHSGGIRDFVLYLNKNKSVQHKPVYFEDTKDQIMVE 253
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+A Q+ +D + + + Y N+I TIDGGTH G + +LTR +N GKK +K+ SL G
Sbjct: 254 VAFQY-TDGFVENLFSYVNNIHTIDGGTHETGFRTALTRVINDYGKKYNILKNGSSSLLG 312
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
E +REGLT IISV+VP P+FEGQTKT+LGN EVR +VD V +YL+ +LE +P V IL
Sbjct: 313 EDIREGLTSIISVKVPEPQFEGQTKTKLGNSEVRGIVDAVVSDYLSTFLEENPSVARKIL 372
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
KS++A +A AA++AR+L R+K+ L SS+LPGKLADCS P SE+FIVEGDSAGGSA
Sbjct: 373 EKSINASRAREAARKARELTRRKTALESSTLPGKLADCSERDPSLSELFIVEGDSAGGSA 432
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQGRDRR+QAILPLRGKILNVE+ + NEEI+ LI ALG G+ G+DF E RYHK
Sbjct: 433 KQGRDRRYQAILPLRGKILNVEKSRLDKILSNEEIRALITALGTGI-GDDFNIEKARYHK 491
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
III+TDADVDGAHIRTLLLTFFYRY + L + G Y+ PPLY+V + K+ Y Y+D EL
Sbjct: 492 IIIMTDADVDGAHIRTLLLTFFYRYMRQLIENGYAYIAQPPLYRVRKEKKEYYVYNDKEL 551
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
+++ + + + S+QR+KGLGEM P QLW+TT+N + R + Q+ +EDA EAN +FS LM
Sbjct: 552 EQLLNRVGRDRI-SLQRYKGLGEMNPEQLWDTTMNFDTRTILQVQLEDAIEANQIFSMLM 610
Query: 483 GARVDTRKELIQNAANLV-NLD 503
G +V+ R+ IQN A V NLD
Sbjct: 611 GDKVEPRRVFIQNNARAVRNLD 632
>gi|310825640|ref|YP_003957997.1| hypothetical protein [Eubacterium limosum KIST612]
gi|308737374|gb|ADO35034.1| hypothetical protein ELI_0009 [Eubacterium limosum KIST612]
Length = 640
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/503 (48%), Positives = 350/503 (69%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ +++GK + L + +R GT + F PD +F + +D + + R+RELAF
Sbjct: 147 YHQTFAKGKKTSELEVTG----NTNRTGTTVHFQPDPDIFDELV-YDFDVLEHRLRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITI 121
LN ++I L E ++ + Y + GG+ Y++++N +K PL++ + + K++D ++
Sbjct: 202 LNKGVSITLADEREAEKRKE--TYCYEGGIRSYIEYMNKNKDPLYEQIAYYEKEMDDYSL 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A Q+ + YS+ + YAN+I T +GG+H+ G K++LTRT+N+ +K+ +K D +L+
Sbjct: 260 EIAFQYTA-GYSENIYSYANNIYTPEGGSHLNGFKSALTRTINTYARKNNYIKGNDKNLT 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IIS+++ +P+FEGQTKT+LGNPEV+ +V+ V + L+ +LE +P + ++
Sbjct: 319 GEDVREGLTAIISIKLLDPQFEGQTKTKLGNPEVKGIVETIVGDELSAFLEENPTIAKTV 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+LSA +A AAK+AR+L R+KS L +++LPGKLADC P SEIFIVEGDSAGGS
Sbjct: 379 IEKTLSASRAREAAKKARELTRRKSALDTTALPGKLADCREKDPSMSEIFIVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRD R QAILPLRGKILNVE+ + + ++++I A G GV GEDF E RYH
Sbjct: 439 AKSGRDSRIQAILPLRGKILNVEKSRLDRILTADTLKSMITAFGTGV-GEDFNVEKARYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYRY + L +EG +Y+ PPL+KV RG+ V+Y Y++
Sbjct: 498 KIIIMTDADVDGAHIRTLLLTFFYRYMRGLIEEGYVYIAQPPLFKVARGQHVEYVYNEKA 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+ + Y+IQR+KGLGEM QLWETT++P R+L ++ IEDAA A+ VF+ L
Sbjct: 558 LDKMFED-KDRSKYTIQRYKGLGEMDAHQLWETTMDPSVRILNRVNIEDAAYADEVFTIL 616
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V RKE I+ NAA + NLD
Sbjct: 617 MGDKVQPRKEFIERNAAKVKNLD 639
>gi|190710561|gb|ACE95111.1| gyrase subunit B [Bacillus thuringiensis serovar novosibirsk]
Length = 627
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/498 (49%), Positives = 340/498 (68%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L + DR GT RF PD ++FT +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGVPAADLKV----IGETDRTGTITRFKPDSEIFTETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFAIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLL FFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLMFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNN 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQENA 625
>gi|190710547|gb|ACE95104.1| gyrase subunit B [Bacillus thuringiensis serovar alesti]
Length = 627
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 244/496 (49%), Positives = 340/496 (68%), Gaps = 10/496 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 194
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + + + ED K Q E+ + GG++ YV+ LN K+P+H+ V DGI +
Sbjct: 195 LNRNIKLTI--EDKRGHK-QKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQV 251
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +L+
Sbjct: 252 EVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLT 310
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V I
Sbjct: 311 GEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKI 370
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAGGS
Sbjct: 371 VDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGS 430
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E RYH
Sbjct: 431 AKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKARYH 489
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D E
Sbjct: 490 KVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNDKE 549
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F L
Sbjct: 550 LEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEIL 609
Query: 482 MGARVDTRKELIQNAA 497
MG +V+ R+ IQ A
Sbjct: 610 MGDKVEPRRNFIQENA 625
>gi|145578017|gb|ABP82727.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar tohokuensis]
Length = 632
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 247/505 (48%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T++ R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLSTRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQA LPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQATLPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|397780370|ref|YP_006544843.1| DNA gyrase subunit B [Methanoculleus bourgensis MS2]
gi|396938872|emb|CCJ36127.1| DNA gyrase subunit B [Methanoculleus bourgensis MS2]
Length = 656
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 244/486 (50%), Positives = 337/486 (69%), Gaps = 12/486 (2%)
Query: 22 PVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKN 81
P+D + QGTRI F PD+ +F T + FD++ + R+RELA+LN LTI+LR E +
Sbjct: 178 PLDYERLQGTRITFQPDRSIFET-VNFDYDMLDHRLRELAYLNSGLTISLRDERTGDAIT 236
Query: 82 QYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDG---ITIDLALQWCSDAYSDTMLG 138
Y F GG+ E+V + K+PLHD V + + D + +++ALQ+ +++Y +T+
Sbjct: 237 ----YCFEGGIREFVAHIGEGKEPLHDEVIYFQKSDPESLVEVEVALQY-NNSYGETVYT 291
Query: 139 YANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVP 198
Y NS+ T +GGTH+EG ++++TR +N+ +++ K D + GE VREGL +IS RV
Sbjct: 292 YVNSVNTREGGTHLEGFRSAITRAINNSARRNNLFKSNDAQVKGEDVREGLASVISTRVA 351
Query: 199 NPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRA 258
P+FEGQTK RLGN VR +VD V LTEY E HP L +I+ K+++A +A AA+ A
Sbjct: 352 EPQFEGQTKMRLGNSNVRGIVDSLVYSSLTEYFEEHPKTLQAIVDKAMAAARAREAARNA 411
Query: 259 RDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRG 318
R+L R+KS L ++ LPGKLADC P +SE++IVEGDSAGGSAKQGRDR+FQAILPLRG
Sbjct: 412 RELARRKSTLETTGLPGKLADCQERDPAKSELYIVEGDSAGGSAKQGRDRKFQAILPLRG 471
Query: 319 KILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRT 378
KILNVE+ E + KN EIQ LI A+G GV G+ F E RYH++I++TDADVDGAHIRT
Sbjct: 472 KILNVEKASEHRILKNAEIQALISAIGTGV-GDSFDVERARYHRVILMTDADVDGAHIRT 530
Query: 379 LLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQ 438
LLLTFFYRY L + G IY+ PPLY++ RGKQ +Y Y + +++++ + F + +IQ
Sbjct: 531 LLLTFFYRYMMELVENGYIYIAQPPLYRIFRGKQEKYAYREEDMREIIAEFGEKGV-TIQ 589
Query: 439 RFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAA 497
R+KGLGEM QLW TT++PE R+LKQ+ IEDA AN +F LMG VD R++ I ++A
Sbjct: 590 RYKGLGEMNAEQLWSTTMDPENRVLKQVRIEDAVYANEIFEKLMGENVDARRDFIRRHAK 649
Query: 498 NLVNLD 503
++NLD
Sbjct: 650 EVINLD 655
>gi|190710559|gb|ACE95110.1| gyrase subunit B [Bacillus thuringiensis serovar nigeriensis]
Length = 627
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/498 (49%), Positives = 340/498 (68%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADEAFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQENA 625
>gi|430751860|ref|YP_007214768.1| DNA gyrase subunit B [Thermobacillus composti KWC4]
gi|430735825|gb|AGA59770.1| DNA gyrase, B subunit [Thermobacillus composti KWC4]
Length = 636
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 251/506 (49%), Positives = 344/506 (67%), Gaps = 18/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG P+ + V D GT I F PD ++FT +F+++T+ RIRELAF
Sbjct: 143 HRQEYKRGVPLYDVRI----VGDTDETGTIITFKPDPEIFTETTEFEYDTLQTRIRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I LR E + + Y + GG+ E+VQ+LN +++PLH+ + G R D
Sbjct: 199 LNKGIKIVLRDERTGAS----DTYKYDGGIIEFVQYLNRNREPLHEQPIYIEGMR---DN 251
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++ALQ+ +D+Y++ + +AN+I T +GGTH G K++LTR +N +++ +KD D
Sbjct: 252 IQVEIALQY-NDSYNENIYSFANNIHTHEGGTHESGFKSALTRIINDYARRAGLLKDSDS 310
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE VREGLT IISV++P P+FEGQTKT+LGN E R +V+ E L E+L+ +P V
Sbjct: 311 NLTGEDVREGLTAIISVKIPEPQFEGQTKTKLGNSEARSIVESMFAEKLQEFLDENPSVS 370
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K + A +A AA++AR+L R+K+ L S+LPGKLADCSS SE++IVEGDSA
Sbjct: 371 RRIVEKGVQAARAREAARKARELTRRKNALEVSALPGKLADCSSRDASISELYIVEGDSA 430
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILPLRGKILNVE+ + N EI+ +I ALG G+ GEDF
Sbjct: 431 GGSAKQGRDRHFQAILPLRGKILNVEKARLDRILANSEIRAIITALGTGI-GEDFDLSKA 489
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHKIII+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYK+ER K V+Y +
Sbjct: 490 RYHKIIIMTDADVDGAHIRTLLLTFFYRYMRQIIEAGYVYIAQPPLYKIERNKVVRYALN 549
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D E ++ + F A +IQR+KGLGEM QLWETT++PE R + Q+ I+DA A+ +F
Sbjct: 550 DKERDEILAEFGEGAKVNIQRYKGLGEMDAEQLWETTMDPESRTMLQVTIQDAIAADAIF 609
Query: 479 SSLMGARVDTRKELIQNAANLV-NLD 503
+LMG V+ R+E IQ A V NLD
Sbjct: 610 DTLMGDDVEPRREFIQAHAKFVKNLD 635
>gi|302872928|ref|YP_003841561.1| DNA gyrase subunit B [Clostridium cellulovorans 743B]
gi|307687881|ref|ZP_07630327.1| DNA gyrase subunit B [Clostridium cellulovorans 743B]
gi|302575785|gb|ADL49797.1| DNA gyrase, B subunit [Clostridium cellulovorans 743B]
Length = 636
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 243/507 (47%), Positives = 351/507 (69%), Gaps = 20/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG T L + + GT + F PD ++F T ++FD++T+ R+RELAF
Sbjct: 143 HRQEFHRGNVATELEV----IGETEEHGTEVFFTPDHEIFET-LEFDYDTLVQRLRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I++ D ++ + + + GG++ +V +LN +K+ L + G + D
Sbjct: 198 LNKGINISIE----DRRNDKSDSFHYDGGIKSFVSYLNRNKEALFPEPIYIEGIQND--- 250
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++ALQ+ +D Y + + +AN+I T +GGTH+ G K ++TR +N +K +K+ D
Sbjct: 251 ILVEIALQY-NDTYQENIFSFANNIDTAEGGTHLAGFKNAMTRVINDYARKFGFLKENDK 309
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSGE VREGLT IISV++P PEFEGQTKT+LGN EVR +VD + ++ +LE +P V
Sbjct: 310 NLSGEDVREGLTAIISVKIPEPEFEGQTKTKLGNSEVRGIVDSILGGSVSTFLEENPSVG 369
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K+L+A +A AAK+AR+L R+KS+L S+SLPGKLADCSS P E EI+IVEGDSA
Sbjct: 370 KIIVDKALTASRAREAAKKARELTRRKSILESTSLPGKLADCSSKDPSECEIYIVEGDSA 429
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGR+RRFQAILPLRGKI+NVE++ + ++ I+++I A G G+ G+DF + L
Sbjct: 430 GGSAKQGRNRRFQAILPLRGKIMNVEKQRLDKILGSDTIRSMITAFGAGI-GKDFDLDKL 488
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+III+TDADVDGAHIRTLLLTFFYRY + + ++G +Y+ PPLYKV R K+ Y Y+
Sbjct: 489 RYHRIIIMTDADVDGAHIRTLLLTFFYRYMRDMIEKGHVYIAQPPLYKVSRNKKEWYAYN 548
Query: 419 DAELKKV-KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
D ELK + K + IQR+KGLGEM QLW+TT++PE R+L ++ + +A A+ +
Sbjct: 549 DDELKDILKDIGGKDNSTVIQRYKGLGEMDAQQLWDTTMDPEHRLLLKVDMGEAMMADEI 608
Query: 478 FSSLMGARVDTRKELIQ-NAANLVNLD 503
F+ LMG +V+ R+E IQ NA N+VNLD
Sbjct: 609 FTILMGEKVEPRREFIQENAKNVVNLD 635
>gi|145577991|gb|ABP82714.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
mycoides]
Length = 631
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 345/505 (68%), Gaps = 16/505 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P L + DR GT RF PD ++FT +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGVPAADLKV----IGETDRTGTITRFKPDSEIFTETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFAIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY PPL+KV++GK++QY Y++
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYAQ-PPLFKVQQGKKIQYAYNN 546
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 547 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 606
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 607 ILMGDKVEPRRNFIQENAKYVKNLD 631
>gi|365874562|ref|ZP_09414095.1| DNA gyrase, B subunit [Thermanaerovibrio velox DSM 12556]
gi|363984649|gb|EHM10856.1| DNA gyrase, B subunit [Thermanaerovibrio velox DSM 12556]
Length = 636
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 244/507 (48%), Positives = 343/507 (67%), Gaps = 18/507 (3%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E+ Q Y RG PVT L + D++GTR+ F PD ++F+T ++F + + GR+RELA
Sbjct: 142 EHRQSYRRGVPVTDLVIG----EDTDKRGTRVHFMPDGEIFST-LEFSSDVLLGRLRELA 196
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK----KPLHDVVGFRKDVD 117
FLNP +TI +P + + F GG+ +V++LN K KP V G + D
Sbjct: 197 FLNPGVTIIFTDLRQNPPLER--KLHFEGGIASFVEYLNRGKEVLFKPPMVVKG---EKD 251
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G+ +++ALQ+ +D Y + + +AN I T++GGTH+ G + +LTR +N +K K +KDKD
Sbjct: 252 GVIVEVALQY-NDTYLERIFAFANLINTVEGGTHVSGFRTALTRIINDQARKEKLLKDKD 310
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+ SG+ ++EGLT +ISV++ P+FEGQTKT+LGN +V+ +VD V E L LE P V
Sbjct: 311 PNFSGDDLKEGLTAVISVKLLEPQFEGQTKTKLGNGDVKGIVDSVVYEGLKVLLEDQPQV 370
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
L ++ K++ A +A AAK+ARDLVR+KS + LPGKLADCS+ PEE E++IVEGDS
Sbjct: 371 LRPVVEKAVKARQAREAAKKARDLVRRKSAMSGMDLPGKLADCSNRKPEECELYIVEGDS 430
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAK GRDR FQAILPLRGKILNVE+ + N++++ +I+ALG GV G++F
Sbjct: 431 AGGSAKMGRDRSFQAILPLRGKILNVEKARLDKILSNDQVRTIIQALGCGV-GDEFDYSK 489
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHKI ++ DADVDGAHIRTLLLT F+RY + + G +YV PPLY+V+ G+ V YCY
Sbjct: 490 LRYHKIFLMADADVDGAHIRTLLLTLFFRYMPQIIENGHLYVAQPPLYRVQEGRNVHYCY 549
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
D EL+++ S S+QR+KGLGEM P QLWETT++P R++K++ +EDA A+ +
Sbjct: 550 SDRELRELMQRL-SGKKASVQRYKGLGEMNPEQLWETTMDPANRVIKRVEVEDAVLADEL 608
Query: 478 FSSLMGARVDTRKELIQ-NAANLVNLD 503
FS LMG V R+E I+ +A + NLD
Sbjct: 609 FSILMGDAVGPRREFIEAHAKEVRNLD 635
>gi|296330042|ref|ZP_06872526.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305672704|ref|YP_003864375.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii str. W23]
gi|296153081|gb|EFG93946.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305410947|gb|ADM36065.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii str. W23]
Length = 638
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 243/503 (48%), Positives = 338/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG PV+ L + D GT F PD ++FT +D++ +A R+RELAF
Sbjct: 143 HRQTYKRGVPVSDLEI----IGETDHTGTTTHFVPDPEIFTETTVYDYDLLANRVRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 199 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N +K +K+ D +LS
Sbjct: 257 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D L ++ +PD I
Sbjct: 316 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSAALETFMLENPDAAKKI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 376 VDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 436 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D E
Sbjct: 495 KVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ + + P +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 555 LEDLLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEML 614
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 615 MGDKVEPRRNFIEANARYVKNLD 637
>gi|190710609|gb|ACE95135.1| gyrase subunit B [Bacillus thuringiensis serovar morrisoni]
Length = 627
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/498 (49%), Positives = 340/498 (68%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+ T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNTHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQENA 625
>gi|433443705|ref|ZP_20408961.1| DNA gyrase, B subunit [Anoxybacillus flavithermus TNO-09.006]
gi|432001978|gb|ELK22841.1| DNA gyrase, B subunit [Anoxybacillus flavithermus TNO-09.006]
Length = 637
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 249/496 (50%), Positives = 342/496 (68%), Gaps = 8/496 (1%)
Query: 11 KPVTTLTCHVLPV-DSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTI 69
KP+ + C L V DR GT I F PD ++FT ++D++T+A R+RELAFLN + I
Sbjct: 146 KPIPCVPCSDLQVVGETDRTGTMIHFKPDPEIFTETTEYDYDTLAHRLRELAFLNKGIRI 205
Query: 70 ALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWC 128
L ED EK + NEY++ GG+ YV+ LN K+ LH+ + + DGI +++ALQ+
Sbjct: 206 TL--EDRRGEKRR-NEYYYEGGISSYVKHLNRTKETLHEEPIYIEGEKDGIQVEIALQY- 261
Query: 129 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREG 188
+D Y+ + +AN+I T +GGTH G K +LTR +N G+K+ K++D +L+GE VREG
Sbjct: 262 NDGYTSNIYSFANNIHTHEGGTHELGFKTALTRIINDYGRKNNMFKEQDANLTGEDVREG 321
Query: 189 LTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSA 248
LT IISV+ P P+FEGQTKT+LGN + R + E ++L +P V I+ K + A
Sbjct: 322 LTAIISVKHPAPQFEGQTKTKLGNSDARTATESIFAEQFEKFLLENPSVAKKIVEKGILA 381
Query: 249 LKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDR 308
+A LAAKRAR+L R+K+ L SSLPGKLADCSS P E+++VEGDSAGGSAKQGRDR
Sbjct: 382 SRARLAAKRARELTRRKNALEVSSLPGKLADCSSRDPAICELYVVEGDSAGGSAKQGRDR 441
Query: 309 RFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTD 368
FQAILPLRGKI+NVE+ + N E++ +I ALG G+ GEDF RYHKIII+TD
Sbjct: 442 HFQAILPLRGKIINVEKSRLDKILSNNEVRAIITALGTGI-GEDFDITKARYHKIIIMTD 500
Query: 369 ADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSS 428
ADVDGAHIRTLLLTFFYRY + + ++G +Y+ PPLYK+++GK+++Y Y D +L+++ +
Sbjct: 501 ADVDGAHIRTLLLTFFYRYMREVIEQGYVYIAQPPLYKIQQGKRIEYAYSDRQLEEILTR 560
Query: 429 FPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDT 488
P IQR+KGLGEM P QLWETT+NPE R L ++ ++DA EA+ F LMG +V+
Sbjct: 561 LPEQPKPVIQRYKGLGEMNPEQLWETTMNPETRTLLKVSLQDAMEADETFEILMGDKVEP 620
Query: 489 RKELI-QNAANLVNLD 503
R++ I +NA + NLD
Sbjct: 621 RRQFIEENAKYVKNLD 636
>gi|145578005|gb|ABP82721.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar bolivia]
Length = 632
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 247/505 (48%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+++ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIYEEPVYVDGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y++
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKIQQGKKIQYAYNE 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|443631606|ref|ZP_21115787.1| DNA gyrase, B subunit [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443349411|gb|ELS63467.1| DNA gyrase, B subunit [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 638
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/503 (48%), Positives = 338/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG PV L + D GT F PD ++FT +D++ +A R+RELAF
Sbjct: 143 HRQTYKRGVPVADLEI----IGETDHTGTTTHFIPDPEIFTETTVYDYDLLANRVRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 199 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N +K +K+ D +LS
Sbjct: 257 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D + ++ +PD I
Sbjct: 316 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSAAMETFMLENPDAAKKI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 376 VDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 436 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D E
Sbjct: 495 KVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ + P +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 555 LEELLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEML 614
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 615 MGDKVEPRRNFIEANARYVKNLD 637
>gi|190710595|gb|ACE95128.1| gyrase subunit B [Bacillus thuringiensis serovar pondicheriensis]
Length = 627
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 244/498 (48%), Positives = 340/498 (68%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNE 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQENA 625
>gi|118445175|ref|YP_879293.1| DNA gyrase subunit B [Clostridium novyi NT]
gi|118135631|gb|ABK62675.1| DNA gyrase, B subunit [Clostridium novyi NT]
Length = 637
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 249/504 (49%), Positives = 353/504 (70%), Gaps = 12/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y +GK V+ LT V D GT + F PD ++F ++FD++T+A R+RELAF
Sbjct: 142 WSQNYKKGKVVSELTI----VGDTDEHGTSVYFKPDDEIFE-EVEFDYSTLAQRLRELAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I L E E+ +E+ + GG++ +V +LN +K+ LH + + + D +
Sbjct: 197 LNKGIKIILVDEREGNERR--DEFHYEGGIKSFVSFLNRNKQTLHAEPIYVEGNKDDYLV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ LQ+ +D Y++ + +AN+I T++GGTH+ G K +LTR LN ++ +K+ D +LS
Sbjct: 255 EVGLQY-NDTYNENIFSFANNIDTVEGGTHLAGFKTALTRVLNDYARRYGFLKENDKNLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ REGLT +ISV++ +P+FEGQTKT+LGN EVR +VD V E ++ +LE +PD +
Sbjct: 314 GDDTREGLTAVISVKLTDPQFEGQTKTKLGNTEVRGIVDSIVSERVSIFLEENPDTAKIV 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KSL+A +A AAK+AR+L R+KSVL S+SLPGKLADCSS P E EI++VEGDSAGGS
Sbjct: 374 IEKSLTAARAREAAKKARELTRRKSVLESTSLPGKLADCSSKDPSECEIYLVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKI+NVE++ + +++I+ +I A G G+ G+DF E +RYH
Sbjct: 434 AKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSDQIRAMITAFGAGI-GKDFDIEKIRYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDADVDGAHI TLLLTFFYRY + L D G +Y+ PPLY+V++GK V Y Y D E
Sbjct: 493 RIIIMTDADVDGAHIATLLLTFFYRYMRELVDGGHVYIAQPPLYQVKKGKSVNYAYSDNE 552
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L++V + + IQR+KGLGEM QLW+TT+NPE R L ++ I+DA A+ VF+
Sbjct: 553 LQEVLAQIGGKDKNTEIQRYKGLGEMDAGQLWDTTMNPEHRTLVKVTIDDAMRADEVFTI 612
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R+E I +NA +VNLD
Sbjct: 613 LMGDKVEPRREFIEENAKKVVNLD 636
>gi|403382763|ref|ZP_10924820.1| DNA gyrase subunit B [Paenibacillus sp. JC66]
Length = 636
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 249/503 (49%), Positives = 341/503 (67%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG P V V +R GT+ F PD ++F ++++ + RIRELAF
Sbjct: 143 YQQEYRRGIP----QYDVKVVGDTERTGTKTTFLPDPEIFKETTVYEYDILQSRIRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
LN + I + E +D EKN + + GG++ +V++LN ++ LHD + + D I +
Sbjct: 199 LNKGIEINILDERTD-EKNSFK---YDGGIKSFVEYLNEKREVLHDEPIYTEGTKDNIQV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D++++ + +AN+I T +GGTH G K++LTR LN +KS ++KD D +L+
Sbjct: 255 EIALQY-NDSFTENIYSFANNINTHEGGTHESGFKSALTRILNDYARKSNSIKDSDANLT 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IISV++P P+FEGQTKT+LGN EVR +V+ E L E+LE HP V I
Sbjct: 314 GDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESLFSEKLQEFLEEHPSVSRKI 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A AA++AR+L R+K+ L SSLPGKLADCSS SEI+IVEGDSAGGS
Sbjct: 374 MEKGIQAARAREAARKARELTRRKNALEVSSLPGKLADCSSKDASISEIYIVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N EI+ +I ALG G+ G DF RYH
Sbjct: 434 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNAEIRAIITALGTGI-GADFDISKARYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLYK+ER K V+Y Y++ +
Sbjct: 493 KVIIMTDADVDGAHIRTLLLTFFYRYMRKLIEAGYVYIAQPPLYKLERNKIVRYAYNEKQ 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
+++ F ++QR+KGLGEM QLWETT++PE R Q+ I+DA EA+ VF +L
Sbjct: 553 REEITKEFGEGTKINVQRYKGLGEMNASQLWETTMDPESRTFLQVTIQDAIEADRVFDTL 612
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG V+ R++ IQ A V NLD
Sbjct: 613 MGDNVEPRRDFIQEHAKYVTNLD 635
>gi|354582066|ref|ZP_09000969.1| DNA gyrase, B subunit [Paenibacillus lactis 154]
gi|353200683|gb|EHB66143.1| DNA gyrase, B subunit [Paenibacillus lactis 154]
Length = 636
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 252/507 (49%), Positives = 342/507 (67%), Gaps = 20/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG P + + + GT + F PD ++FT +FD+NT+ R+RELAF
Sbjct: 143 YQQEYRRGVPQYDIKV----IGDTEETGTTVTFLPDPEIFTETTEFDYNTLLTRVRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPLHD----VVGFRKDVD 117
LN + + L E + ++YF + GG+ EYV++LN K+ LH+ V G R D
Sbjct: 199 LNKGIALTLTDE-----RTGASDYFKYEGGIIEYVKFLNEKKEALHEEPIYVEGSR---D 250
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
I ++++LQ+ +D+Y++ + +AN+I T +GGTH G K++LTR +N +K+ +KD
Sbjct: 251 NIQVEISLQY-NDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYARKTGMIKDNS 309
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+LSG+ VREGLT IISV+VP P+FEGQTKT+LGN EVR +V+ E L E+L+ +P V
Sbjct: 310 NNLSGDDVREGLTAIISVKVPEPQFEGQTKTKLGNSEVRGIVESLFAEKLQEFLQENPSV 369
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
IL K+L A +A AA++AR++ R+KS L S+LPGKLADCSS SE++IVEGDS
Sbjct: 370 SRRILEKALQASRAREAARKAREMTRRKSALEVSALPGKLADCSSKDASISELYIVEGDS 429
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDR FQAILPLRGKILNVE+ + N EI+ +I ALG G+ +DF
Sbjct: 430 AGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIITALGTGI-ADDFDLSK 488
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
RYHKIII+TDADVDGAHIRTLLLTFFYRY + L + G IY+ PPL+K+ER K V+Y
Sbjct: 489 ARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPPLFKIERNKVVRYAG 548
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ E ++ F NA ++IQR+KGLGEM QLWETT++PE R + Q+ IEDA A+ +
Sbjct: 549 SEKERDEIIKEFGENAKFNIQRYKGLGEMNATQLWETTMDPESRTMLQVTIEDAMLADTL 608
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
F +LMG V+ R++ IQ A V NLD
Sbjct: 609 FDTLMGDNVEPRRDFIQEHAKSVRNLD 635
>gi|190710555|gb|ACE95108.1| gyrase subunit B [Bacillus thuringiensis serovar monterrey]
Length = 627
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 244/498 (48%), Positives = 340/498 (68%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNE 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQENA 625
>gi|397905911|ref|ZP_10506745.1| DNA gyrase subunit B [Caloramator australicus RC3]
gi|397161079|emb|CCJ34080.1| DNA gyrase subunit B [Caloramator australicus RC3]
Length = 631
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 246/503 (48%), Positives = 348/503 (69%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ QKY RGKPV+ L + + GT++ F D ++F T +++++ ++ R+RELAF
Sbjct: 140 FRQKYERGKPVSELEV----IGEAEETGTKVTFLADDEIFETT-EYEYDVLSQRLRELAF 194
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L E D ++ Y + GG++E+V++LN +K+ LHD + F D +
Sbjct: 195 LNKGIAINLIDERVDKKET----YHYEGGIKEFVKYLNRNKEVLHDEPIYFEASKDDTVV 250
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D Y++ + +AN+I T +GGTH+ G K +LT+ +N +K +K+ + +L
Sbjct: 251 EIALQY-NDGYNENIFSFANNISTTEGGTHVSGFKTALTKVINDYARKYGFLKENEKNLQ 309
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T +ISV++ NPEFEGQTKT+LGN EVR +VD V + ++ +LE +P V I
Sbjct: 310 GEDTREGITAVISVKITNPEFEGQTKTKLGNTEVRGIVDAIVTDKVSAFLEENPSVAKVI 369
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A AA++AR+L R+K+VL ++SLPGKLADCS P+ EIF+VEGDSAGGS
Sbjct: 370 VEKCLLASRAREAARKARELTRRKNVLENTSLPGKLADCSEKDPKLCEIFLVEGDSAGGS 429
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDRRFQAILPLRGKI+NVE++ + +EI+N+I A G G+ G+DF E +RY
Sbjct: 430 AKGGRDRRFQAILPLRGKIMNVEKQRLDKILAYQEIRNMITAFGAGI-GDDFDIEKIRYD 488
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYRY + L +EG +Y+ PPLYK+ +GK + Y Y D E
Sbjct: 489 KIIIMTDADVDGAHIRTLLLTFFYRYMRPLIEEGHVYIAQPPLYKISKGKNIYYAYSDRE 548
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ + + + IQR+KGLGEM QLWETT+NPE R L ++ IEDA EA+ VF+ L
Sbjct: 549 LEAKLNEIGRDNV-EIQRYKGLGEMNAEQLWETTMNPETRTLLKVTIEDAVEADEVFTIL 607
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+E IQ NA + NLD
Sbjct: 608 MGDKVEPRREFIQKNAKRVQNLD 630
>gi|352516178|ref|YP_004885495.1| DNA gyrase subunit B [Tetragenococcus halophilus NBRC 12172]
gi|348600285|dbj|BAK93331.1| DNA gyrase subunit B [Tetragenococcus halophilus NBRC 12172]
Length = 649
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 244/511 (47%), Positives = 346/511 (67%), Gaps = 22/511 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q++ RGK +T + + + QGT + F PD ++F ++F + +A RIRELAF
Sbjct: 150 YYQEFHRGK----VTGDLKVIGETELQGTEVHFEPDSEIFNETVEFSFDKLATRIRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK-----KPLHDVVGFRKDVD 117
LN L I++ ED PE+ Y + GG++ YV+ LN K +P++ + G ++D
Sbjct: 206 LNRGLHISI--EDRRPEEPVVKNYHYEGGIKSYVEHLNASKDVLFPEPIY-LEGQQQD-- 260
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
I +++++Q+ +D+Y ++ +AN+I T +GGTH G K +LTR +N G K K +K+ D
Sbjct: 261 -INVEVSIQY-TDSYHTNLMTFANNIHTYEGGTHEAGFKTALTRVINDYGHKQKLMKEND 318
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+LSGE VREGLT ++SV+ P+P+FEGQTKT+LGN EVR V D+ E+ ++L +P +
Sbjct: 319 DNLSGEDVREGLTAVVSVKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEHFAKFLMENPSI 378
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K + A KA AAKRAR++ R+K L S+LPGKLADCSS PE+SE+FIVEGDS
Sbjct: 379 GRRIVEKGMLASKARQAAKRAREVTRRKGALEISNLPGKLADCSSRDPEKSELFIVEGDS 438
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGR R FQAILP+RGKILNVE+ + NEEI++L A+G G GE+F
Sbjct: 439 AGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GEEFDVSK 497
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC- 416
RYHK++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PPLY V++GK ++Y
Sbjct: 498 ARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPLYGVKQGKNIRYVQ 557
Query: 417 ---YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
+ + EL++V S P + S+QR+KGLGEM QLW+TT+NPE R++ ++ IEDA E
Sbjct: 558 PGEHAEEELQEVIDSLPQSPKPSVQRYKGLGEMDEHQLWQTTMNPENRLMLRVSIEDAIE 617
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLV-NLD 503
A+ VF LMG V+ R+ I+ A+ V NLD
Sbjct: 618 ADQVFEMLMGDHVEPRRAFIEENAHYVQNLD 648
>gi|164686442|ref|ZP_02210470.1| hypothetical protein CLOBAR_00007 [Clostridium bartlettii DSM
16795]
gi|164604453|gb|EDQ97918.1| DNA gyrase, B subunit [Clostridium bartlettii DSM 16795]
Length = 633
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 254/503 (50%), Positives = 344/503 (68%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y +G + L V D GT I+F PD +F I FD+ T+ R+RELAF
Sbjct: 140 YRQSYKKGITDSELEI----VGESDHTGTIIQFMPDATIFDD-IVFDYKTLETRLRELAF 194
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I ED P + Q E+ + GG+ E+V++LN+ K P+H +VV K + +
Sbjct: 195 LNKGVRIVF--EDKRPGQEQKKEFLYDGGIREFVEYLNSTKTPIHENVVYIDKKIQDCMV 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D YS+ +L +AN+I T +GG H+ G KA+LT+T+N K++K +K+ D +LS
Sbjct: 253 EIAIQY-TDGYSENILSFANNIDTHEGGAHLAGFKAALTKTVNEYAKRNKLLKENDANLS 311
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT ++SV++P+P+FEGQTKT+LGN +R +VD E L +LE +P I
Sbjct: 312 GEDIREGLTAVVSVKLPDPQFEGQTKTKLGNTRMRGIVDAVTVEELGAFLEENPQTSRII 371
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AAKRAR+L R+K+VL S+SLPGKLADC+ P +SEIF+VEGDSAGGS
Sbjct: 372 VDKALRAQRAREAAKRARELTRRKTVLESTSLPGKLADCAEKDPAKSEIFLVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR QAILPLRGKILNVE+ + ++EI+N+I A G GV G DF E RYH
Sbjct: 432 AKQGRDRYTQAILPLRGKILNVEKSRLDRILSSDEIKNMITAYGCGV-GNDFDLEKARYH 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFF+RY + L D G +Y+ PPLYKV++ K+ Y Y D +
Sbjct: 491 KIVIMTDADVDGAHIRTLLLTFFFRYMRPLIDNGYVYIAQPPLYKVKKQKKEYYVYSDKQ 550
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ + + + +QR+KGLGEM P QLWETT+NPE R L Q+ I+DA EA+ +FS L
Sbjct: 551 LEALLEEIGKSGI-ELQRYKGLGEMNPEQLWETTMNPETRTLLQVTIDDATEADRIFSML 609
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V RKE I+ A V NLD
Sbjct: 610 MGDKVGPRKEFIEENAEFVKNLD 632
>gi|145578007|gb|ABP82722.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar finitimus]
Length = 632
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 246/505 (48%), Positives = 344/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K A +A +AAK+AR+L R+K L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KMVEKGTMAARARVAAKKARELTRRKRALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y++
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKIQQGKKIQYAYNE 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|145577993|gb|ABP82715.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar alesti]
Length = 632
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 248/505 (49%), Positives = 342/505 (67%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVALQY-NEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRD FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDCHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLL TFFYRY + + G IY+ PPL+KV++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLFTFFYRYMGQIIECGYIYIAQPPLFKVQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAANLV-NLD 503
LMG +V+ R+ IQ A V NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKFVKNLD 632
>gi|145577997|gb|ABP82717.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar pulsiensis]
Length = 632
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 247/505 (48%), Positives = 344/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNE 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + + IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELSAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 608 ILMGDKVEPRRNFIQENAKYVKNLD 632
>gi|256826465|ref|YP_003150424.1| DNA gyrase subunit B [Cryptobacterium curtum DSM 15641]
gi|256582608|gb|ACU93742.1| DNA gyrase subunit B [Cryptobacterium curtum DSM 15641]
Length = 645
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 249/509 (48%), Positives = 349/509 (68%), Gaps = 11/509 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y +SRGK V L HV+ DSK GT +RFWPD ++FT F++NT+A R RE+AF
Sbjct: 144 YEITFSRGKTVEKL--HVVG-DSK-HTGTTVRFWPDPEIFTETTVFNYNTLAERFREMAF 199
Query: 63 LNPKLTIALRKE-DSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGI 119
LN L I L E + D E +E F F G++++V++L T K+ L+ + F +
Sbjct: 200 LNKGLKITLYDERELDGEGVAKHETFQFQDGIKDFVKFLTTGKEVLNTKPIYFEAEGPAG 259
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+QW S ++++ +AN+I TI+GGTH++G K ++TRT+N ++ +K+KD +
Sbjct: 260 EVEVAMQWTSSFSTNSVFSFANNINTIEGGTHLDGFKQAVTRTINDYAREKGILKEKDSN 319
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+G+ REGL+ +ISV++ +P+FEGQTKT+LGN E+R++V +V + L EYLE +P
Sbjct: 320 LTGDDCREGLSAVISVKLHDPQFEGQTKTKLGNSEMRQLVSSAVNQGLGEYLEENPTPAK 379
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I++K+ ALKA AA++AR++ R+K+VL S +LPGKLADCSS + E+FIVEGDSAG
Sbjct: 380 RIINKASQALKAREAARKAREMTRRKNVLDSFALPGKLADCSSKNAADCEMFIVEGDSAG 439
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQ RDR++QAILPLRGKILNVER ++ I +LI A+G + G+DF E R
Sbjct: 440 GSAKQARDRKYQAILPLRGKILNVERAGLHRALSSDTISSLITAVGTNI-GDDFDAEKAR 498
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG-KQVQYCYD 418
YH+III+TDADVDGAHI+ LLLTFFYRY L + G IY+ +PPLY ++ G K+++Y Y+
Sbjct: 499 YHRIIIMTDADVDGAHIQILLLTFFYRYMPELINRGYIYIAMPPLYGIKEGKKKIRYVYN 558
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D L + +P++ S+QR+KGLGEM P QLWETT+ PE R+L Q+ IEDAA A
Sbjct: 559 DNALAEAMKDYPTDKKPSVQRYKGLGEMDPDQLWETTMEPETRILMQVGIEDAAAAERAV 618
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
S LMG +V+ RKE IQ A V LDI
Sbjct: 619 SELMGDQVEPRKEYIQKHAKDVRF--LDI 645
>gi|241889819|ref|ZP_04777117.1| DNA gyrase, B subunit [Gemella haemolysans ATCC 10379]
gi|241863441|gb|EER67825.1| DNA gyrase, B subunit [Gemella haemolysans ATCC 10379]
Length = 638
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 235/502 (46%), Positives = 342/502 (68%), Gaps = 10/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y K+ RG V +T + DR GT IRF D ++F ++++ + RIRELAF
Sbjct: 145 YSMKFERGDVVQGITV----IGDTDRTGTTIRFKADPEIFQETTVYEYDILRTRIRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN +TI L+ E EK + + + GGL EYV+ LN +K LH+ + ++DG ++
Sbjct: 201 LNKGITIILKDERIGQEKEE--TFCYEGGLLEYVEMLNENKDALHEAIYVHGEMDGKEVE 258
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+++Q+ + YS+ +L YAN+I T +GGTH G K +LTR +NS GKK+K +KDK+ SL+G
Sbjct: 259 ISMQYNT-GYSNNVLSYANNINTHEGGTHESGFKTALTRIINSYGKKNKLIKDKE-SLTG 316
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+ VREGL IIS++ PNP+FEGQTKT+LGN E+ + ++ E L +L +P I+
Sbjct: 317 DDVREGLVAIISIKHPNPQFEGQTKTKLGNSEMSTITNKLFSEELDRFLLENPKTAKIIV 376
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K L A +A +AAK+AR+ R+K+ L ++LPGKLADCSS E E+F+VEGDSAGGSA
Sbjct: 377 EKGLQASRARIAAKKARESTRRKNALEFTNLPGKLADCSSKDAAECELFLVEGDSAGGSA 436
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
K GR+ +FQAILPL+GKILNVE+ + N+E+++LI A+G+G+ GE + LRYHK
Sbjct: 437 KLGRNSKFQAILPLKGKILNVEKVRIDKVLANDEVRSLITAIGMGI-GETLNIDKLRYHK 495
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
I+I+TDADVDG+HIRTLLLTFF+RY + L D G +Y+ PPLY ++ GK+ YC+ + EL
Sbjct: 496 IVIMTDADVDGSHIRTLLLTFFFRYMRELIDAGYVYIARPPLYGLKVGKKEFYCHTEEEL 555
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
K+ + Y++QR+KGLGEM +LW+TT++PE R++ Q+ + DA A+ F +LM
Sbjct: 556 KQNIEEHAGDKKYTVQRYKGLGEMNAEELWDTTMDPEHRLMYQVSVNDAQRADAAFDTLM 615
Query: 483 GARVDTRKELIQ-NAANLVNLD 503
G +V+ R++ I+ NA N++NLD
Sbjct: 616 GEKVEPRRKFIEDNALNVINLD 637
>gi|150020566|ref|YP_001305920.1| DNA gyrase subunit B [Thermosipho melanesiensis BI429]
gi|149793087|gb|ABR30535.1| DNA gyrase, B subunit [Thermosipho melanesiensis BI429]
Length = 627
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 252/492 (51%), Positives = 341/492 (69%), Gaps = 15/492 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+QKY RG P+T V + D +GT +RF PD ++F+T ++FD +TI R+RELAF
Sbjct: 138 YYQKYQRGTPLT----EVRIIGETDYRGTIVRFKPDTEIFST-VEFDSDTILIRLRELAF 192
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LNP +T+ + E + EK + F GGL+E+V L+ + LH+ + + + I +D
Sbjct: 193 LNPNITVVFKDERENIEKT----FHFTGGLKEFVVHLSKGTRSLHEPILVSGEYNSIKVD 248
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+ Q+ + + + + + N+IRT+DGGTH+ G K + TR +N LGKK+ +K KD +L G
Sbjct: 249 VCFQYTASDF-EKIYSFVNNIRTVDGGTHVTGFKTAFTRVVNELGKKTGQLK-KD-TLRG 305
Query: 183 EHVREGLTCIISVRVP-NPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
E +REG+ I+SV + PEFEGQTK++LGN EV++ V + V+E L EY E + + L I
Sbjct: 306 EDIREGIVAIVSVLMSKTPEFEGQTKSKLGNEEVQEAVAKVVREKLLEYFESNENTLKII 365
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A KA AAK AR+++++KSV SSSLPGKLADC + EESE+FIVEGDSAGGS
Sbjct: 366 IQKALEAKKAREAAKHAREMIKRKSVFGSSSLPGKLADCITKKMEESELFIVEGDSAGGS 425
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQ RDR FQAILPLRGKILNVE+ + KNE+I+++I ALG G+ G+DF LRY
Sbjct: 426 AKQARDRNFQAILPLRGKILNVEKSSWLKLLKNEQIRDIITALGTGI-GDDFDISKLRYG 484
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLT FYRY K L DEG IY+ PPLYKV K++ Y Y D E
Sbjct: 485 KIIIMTDADVDGAHIRTLLLTLFYRYMKELIDEGRIYIAQPPLYKVNVNKKIYYFYSDEE 544
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ K + + IQR+KGLGEM P QLWETT++PE+R L ++ IEDA EA+ +F L
Sbjct: 545 LEEFKENLKDKK-FEIQRYKGLGEMNPQQLWETTMDPEKRKLLKVEIEDAEEADELFEML 603
Query: 482 MGARVDTRKELI 493
MG+ ++RKE I
Sbjct: 604 MGSDTESRKEFI 615
>gi|312126267|ref|YP_003991141.1| DNA gyrase subunit B [Caldicellulosiruptor hydrothermalis 108]
gi|311776286|gb|ADQ05772.1| DNA gyrase, B subunit [Caldicellulosiruptor hydrothermalis 108]
Length = 637
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 247/507 (48%), Positives = 349/507 (68%), Gaps = 22/507 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RGKP TC + + + DR GT++ F PD ++F T I+FD + I R+RELAF
Sbjct: 146 YYQRYERGKP----TCELKVIGTTDRTGTKVTFLPDDEIFET-IEFDGDVILQRLRELAF 200
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDG 118
LN + I R+++ P + +YN GG+ E+V++LN +K+ LH + + + +
Sbjct: 201 LNKGIRIVFVDEREKNVKPIELKYN-----GGIAEFVKFLNRNKEVLHQEPIYIEGEKND 255
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I I++A+Q+ D + + + +AN+I TIDGGTH+ G K ++T+ +N KK +K D
Sbjct: 256 ILIEVAVQYTED-FGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEYAKKYNFIKG-DT 313
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
L GE +R+G+T I+SV++ P+FEGQTKT+LGN E R V+ V E L +LE +PDV
Sbjct: 314 QLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSEKLAAFLEENPDVS 373
Query: 239 DSILSKSLSALKAALAAKRARDLV-RQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K++ A KA AK+AR+LV ++KS L SS+LPGKLADCS P + EIFIVEGDS
Sbjct: 374 KKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDPAKCEIFIVEGDS 433
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRR+QAILPL GK+LNVE+ + +Y N+++ LI+ALG+G+ G D +
Sbjct: 434 AGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALGVGI-GNDIDLKK 492
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHKIII+ DADVDG+HIRTLLLTFFYRY + L + G IY+ PPLYK+ +GKQV+Y Y
Sbjct: 493 LRYHKIIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLYKITKGKQVRYAY 552
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+D EL+K+ +QRFKGLGEM +LWETT++P +R+L ++ +EDA A +
Sbjct: 553 NDKELQKILQEMKDA---QVQRFKGLGEMNAQELWETTMDPARRILLRVELEDAVMAEEI 609
Query: 478 FSSLMGARVDTRKELIQ-NAANLVNLD 503
F+ LMG +V+ R+E I+ NA + NLD
Sbjct: 610 FTILMGDKVEPRREFIEKNAKYVRNLD 636
>gi|190710605|gb|ACE95133.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae]
Length = 627
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 245/498 (49%), Positives = 338/498 (67%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGHKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQASLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQENA 625
>gi|332685539|ref|YP_004455313.1| DNA gyrase subunit B [Melissococcus plutonius ATCC 35311]
gi|379726623|ref|YP_005318808.1| DNA gyrase subunit B [Melissococcus plutonius DAT561]
gi|332369548|dbj|BAK20504.1| DNA gyrase subunit B [Melissococcus plutonius ATCC 35311]
gi|376317526|dbj|BAL61313.1| DNA gyrase subunit B [Melissococcus plutonius DAT561]
Length = 650
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 244/510 (47%), Positives = 339/510 (66%), Gaps = 20/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L + DR GT I F PD ++F I+F+ +A R+RELAF
Sbjct: 151 YYQEYHRGNVVADLKV----IGDTDRHGTAIHFIPDPEIFKETIEFNFEKLATRVRELAF 206
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN L I++ ED + +Y++ GG++ YV LN +K L D V G +++
Sbjct: 207 LNRGLKISI--EDLRGPETVLRDYYYEGGIKSYVGHLNANKDVLFDEPIYVEGEQQE--- 261
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
IT+++++Q+ +D Y +L +AN+I T +GGTH G K +LTR +N KK K +K+ D
Sbjct: 262 ITVEVSMQY-TDGYHSNLLSFANNIHTYEGGTHEAGFKTALTRVINDYAKKQKLMKENDE 320
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE VREGLTC+IS++ P P+FEGQTKT+LGN EVR V D+ E+ ++L +P +
Sbjct: 321 NLTGEDVREGLTCVISIKHPEPQFEGQTKTKLGNSEVRTVTDRLFSEHFGKFLMENPTIG 380
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K L A KA LAAKRAR++ R+K L S+LPGKLADCSS E+ E+FIVEGDSA
Sbjct: 381 KKIVDKGLLASKARLAAKRAREVTRRKGNLEISNLPGKLADCSSREAEKCELFIVEGDSA 440
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILP+RGKILNVE+ + NEEI++L A+G G GEDF
Sbjct: 441 GGSAKQGRDRMFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GEDFDVSKA 499
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHK+II+TDADVDGAHIRTLLLT FYR+ + + + G +Y+ PPLY V++GK + Y
Sbjct: 500 RYHKLIIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYVYIAQPPLYGVKQGKNITYVQP 559
Query: 419 ----DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
+ EL + + P + S+QR+KGLGEM QLWETT++PE+R++ ++ ++DA A
Sbjct: 560 GKQAEEELSHLMETLPKSPKASVQRYKGLGEMDDHQLWETTMDPERRLMSRVSVDDAVAA 619
Query: 475 NVVFSSLMGARVDTRKELIQNAANLV-NLD 503
+ +F LMG +V+ R+ I+ A+ V NLD
Sbjct: 620 DQIFEMLMGDKVEPRRAFIEENAHYVKNLD 649
>gi|398309108|ref|ZP_10512582.1| DNA gyrase subunit B [Bacillus mojavensis RO-H-1]
Length = 638
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 241/503 (47%), Positives = 340/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y+RG PV+ L + D GT F PD ++FT +++++ +A R+RELAF
Sbjct: 143 HRQVYNRGIPVSDLEV----IGETDHTGTTTHFVPDPEIFTETTEYEYDLLANRVRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 199 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D Y+ + + N+I T +GGTH G K LTR +N +K +K+ D +LS
Sbjct: 257 EVALQY-NDGYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D L ++ +PD I
Sbjct: 316 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSAALETFMLENPDAARKI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 376 VDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 436 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D +
Sbjct: 495 KVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKQ 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ + P +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 555 LEELLQTLPQTPKPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEML 614
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 615 MGDKVEPRRNFIEANARYVKNLD 637
>gi|332685540|ref|YP_004455314.1| DNA gyrase subunit B [Melissococcus plutonius ATCC 35311]
gi|332369549|dbj|BAK20505.1| DNA gyrase subunit B [Melissococcus plutonius ATCC 35311]
Length = 643
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 244/510 (47%), Positives = 339/510 (66%), Gaps = 20/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L + DR GT I F PD ++F I+F+ +A R+RELAF
Sbjct: 144 YYQEYHRGNVVADLKV----IGDTDRHGTAIHFIPDPEIFKETIEFNFEKLATRVRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN L I++ ED + +Y++ GG++ YV LN +K L D V G +++
Sbjct: 200 LNRGLKISI--EDLRGPETVLRDYYYEGGIKSYVGHLNANKDVLFDEPIYVEGEQQE--- 254
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
IT+++++Q+ +D Y +L +AN+I T +GGTH G K +LTR +N KK K +K+ D
Sbjct: 255 ITVEVSMQY-TDGYHSNLLSFANNIHTYEGGTHEAGFKTALTRVINDYAKKQKLMKENDE 313
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE VREGLTC+IS++ P P+FEGQTKT+LGN EVR V D+ E+ ++L +P +
Sbjct: 314 NLTGEDVREGLTCVISIKHPEPQFEGQTKTKLGNSEVRTVTDRLFSEHFGKFLMENPTIG 373
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K L A KA LAAKRAR++ R+K L S+LPGKLADCSS E+ E+FIVEGDSA
Sbjct: 374 KKIVDKGLLASKARLAAKRAREVTRRKGNLEISNLPGKLADCSSREAEKCELFIVEGDSA 433
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILP+RGKILNVE+ + NEEI++L A+G G GEDF
Sbjct: 434 GGSAKQGRDRMFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GEDFDVSKA 492
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHK+II+TDADVDGAHIRTLLLT FYR+ + + + G +Y+ PPLY V++GK + Y
Sbjct: 493 RYHKLIIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYVYIAQPPLYGVKQGKNITYVQP 552
Query: 419 ----DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
+ EL + + P + S+QR+KGLGEM QLWETT++PE+R++ ++ ++DA A
Sbjct: 553 GKQAEEELSHLMETLPKSPKASVQRYKGLGEMDDHQLWETTMDPERRLMSRVSVDDAVAA 612
Query: 475 NVVFSSLMGARVDTRKELIQNAANLV-NLD 503
+ +F LMG +V+ R+ I+ A+ V NLD
Sbjct: 613 DQIFEMLMGDKVEPRRAFIEENAHYVKNLD 642
>gi|16799085|ref|NP_469353.1| DNA gyrase subunit B [Listeria innocua Clip11262]
gi|423101125|ref|ZP_17088829.1| DNA gyrase, B subunit [Listeria innocua ATCC 33091]
gi|16412427|emb|CAC95239.1| DNA gyrase subunit B [Listeria innocua Clip11262]
gi|370792240|gb|EHN60117.1| DNA gyrase, B subunit [Listeria innocua ATCC 33091]
Length = 646
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 248/504 (49%), Positives = 339/504 (67%), Gaps = 10/504 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y+Q++ RG V + D +GT + F PD Q+FT +FD +T+ R RELA
Sbjct: 150 KYYQRFERGDVVMDMEVQ----GETDYRGTIVHFTPDPQIFTETTEFDFDTLRTRTRELA 205
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGIT 120
FLN LTI++ ED E ++ + GG+ YV+ LN K +H+ + + D I
Sbjct: 206 FLNRGLTISI--EDKREEHKVRKDFHYEGGIRSYVEHLNKAKDVIHEPPIYLEGERDDIM 263
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++++Q+ + +S ++ +AN+I T +GGTH G K +LTR +N +++K KD D +L
Sbjct: 264 VEISMQYNT-GFSSNIISFANNIHTYEGGTHESGFKTALTRVINDYARRNKLFKDSDDNL 322
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGE VREGLT IIS++ P+P+FEGQTKT+LGN E R + D+ E L +++ +PDV
Sbjct: 323 SGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARSITDKLFSEALNKFMMENPDVAKK 382
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K + A +A LAAKRAR++ R+ S L SSLPGKLADCSS PE SE++IVEGDSAGG
Sbjct: 383 IVEKGVVASRARLAAKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGG 442
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILP+RGKILNVE+ + NEEI+ + A+G G G DF RY
Sbjct: 443 SAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGG-DFDVSKSRY 501
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK+II+TDADVDGAHIRTLLLT FYRY + L D G IY+ PPLY+++ GKQ++Y Y D
Sbjct: 502 HKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDG 561
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+L+ +S + YSIQR+KGLGEM P QLW+TT+NPE R L Q+ I+DA +A+ F
Sbjct: 562 QLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQVNIKDAIDADETFEM 621
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG RV+ R++ I++ A V NLD
Sbjct: 622 LMGDRVEPRRKFIEDNAQYVKNLD 645
>gi|336477181|ref|YP_004616322.1| DNA gyrase subunit B [Methanosalsum zhilinae DSM 4017]
gi|335930562|gb|AEH61103.1| DNA gyrase, B subunit [Methanosalsum zhilinae DSM 4017]
Length = 634
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 247/503 (49%), Positives = 339/503 (67%), Gaps = 13/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QKY RG P + + D GT I+F PD +F + + ++T++ R+RELAF
Sbjct: 142 YLQKYKRGIPEEDVAL----IGEADGSGTIIKFKPDSTIFE-ELDYSYDTLSSRLRELAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I++ SD E + +Y GG+ +V LN +++ LHD + ++ D I +
Sbjct: 197 LNKGIRISIGDRRSDEESKETFQY--EGGIRSFVDHLNKNRQTLHDDPIYLEREKDNIMV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y++ + +AN+I T +GGTH+ G K++LTR N KK+ KD D LS
Sbjct: 255 EIAMQY-TDTYAEHVYSFANNINTHEGGTHLIGFKSALTRVTNDYIKKNNLTKD-DSKLS 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IISV++P P+FEGQTKTRLGN E++ +V+ V E L+++ E +P + + I
Sbjct: 313 GEDVREGLTAIISVKIPEPQFEGQTKTRLGNSELKGIVESLVSESLSDFFEENPKIANQI 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KSLSA +A AAK+AR+L R+KS L S+LPGKLADCS P SE+++VEGDSAGGS
Sbjct: 373 IQKSLSAKRAREAAKKARELTRRKSALEVSTLPGKLADCSEKDPSVSELYLVEGDSAGGS 432
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILP RGKI+NVE+ + KN+EI +LI ALG G+ G+DF RYH
Sbjct: 433 AKQGRNRAFQAILPFRGKIINVEKSRLGKILKNKEILSLITALGTGL-GDDFDISKTRYH 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTL+LTF +RY L D G +Y+ PPLYK+++GK Y Y + E
Sbjct: 492 KIIIMTDADVDGAHIRTLILTFIFRYMTPLIDAGYVYIAQPPLYKIKKGKAEHYAYTEKE 551
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LK+ + S QR+KGLGEM P QLWETT++PE R L ++ ++DA A+ +FS L
Sbjct: 552 LKQKLKQLGEKGI-SYQRYKGLGEMNPEQLWETTMSPETRTLLKVTMDDAVTADEIFSIL 610
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG V RKE IQ +A +VNLD
Sbjct: 611 MGDEVAPRKEFIQAHAREVVNLD 633
>gi|312143598|ref|YP_003995044.1| DNA gyrase subunit B [Halanaerobium hydrogeniformans]
gi|311904249|gb|ADQ14690.1| DNA gyrase, B subunit [Halanaerobium hydrogeniformans]
Length = 636
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 241/500 (48%), Positives = 340/500 (68%), Gaps = 13/500 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y Q + +G P + L + R GT IRF D +F A + +A R++E A
Sbjct: 144 KYRQVFKKGVPTSKLE----KLGKTKRSGTVIRFKADSDIFA-ARDYKFENLAHRLQESA 198
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
+LN LT+ L E + EK + +Y GG++ +V++LN D+ ++ D++ F +
Sbjct: 199 YLNKDLTLILIDERGEGEKKKVFQY--DGGIKAFVEFLNKDRNVINEDIIYFESKPEDYE 256
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q+ +D Y++ + YAN+I TIDGG H+ G K +LTR +N+ K + + K SL
Sbjct: 257 VEMAIQY-NDGYNERIYSYANNINTIDGGYHLTGFKTALTRAINNFAKNNNRLPAKISSL 315
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
G+ VREG+T II+V++P P+FEGQTKT+LGN E+R +V+ V EYL+ Y + +PD+ +
Sbjct: 316 RGKDVREGITAIINVKLPEPQFEGQTKTKLGNSELRSIVESEVYEYLSLYFDTNPDLANK 375
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
++ K++ A++A A+K+AR+L ++KS L S++LPGKLADCSS E+SE+FIVEGDSAGG
Sbjct: 376 VIDKAVQAVRARKASKKARELTKRKSALNSNALPGKLADCSSKKAEKSELFIVEGDSAGG 435
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILPL+GKILNVER + N EI ++I ALG G+ GEDF + LRY
Sbjct: 436 SAKQGRDRNFQAILPLKGKILNVERARLDKILNNTEIASIITALGAGI-GEDFNIKNLRY 494
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIII+TDADVDGAHI TL+LT FYRY L +EG IY+ PPLYKV RGK +Y Y D
Sbjct: 495 HKIIIMTDADVDGAHIATLILTLFYRYMPELIEEGYIYLAKPPLYKVSRGKSTKYLYSDQ 554
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL + K + +S+QR+KGLGEM P QLW+TT++PE R+L ++ I+D EA+ +F+
Sbjct: 555 ELAEYKKKHEN---FSLQRYKGLGEMNPRQLWDTTMDPENRVLLRVEIDDDFEADDIFTR 611
Query: 481 LMGARVDTRKELIQNAANLV 500
LMG+ RKE I N A LV
Sbjct: 612 LMGSNASLRKEFIFNNAELV 631
>gi|222528063|ref|YP_002571945.1| DNA gyrase subunit B [Caldicellulosiruptor bescii DSM 6725]
gi|222454910|gb|ACM59172.1| DNA gyrase, B subunit [Caldicellulosiruptor bescii DSM 6725]
Length = 650
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 245/507 (48%), Positives = 349/507 (68%), Gaps = 22/507 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RGKP TC + + + DR GT++ F PD ++F T I+FD + I R+RELAF
Sbjct: 159 YYQRYERGKP----TCELKVIGTTDRTGTKVTFLPDDEIFET-IEFDGDVILQRLRELAF 213
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDG 118
LN + I R+++ P + +Y+ GG+ E+V++LN +K+ LH + + + +
Sbjct: 214 LNKGIRIVFVDEREKNVKPVELKYD-----GGIAEFVKFLNRNKEVLHQEPIYIEGEKND 268
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I I++A+Q+ D + + + +AN+I TIDGGTH+ G K ++T+ +N KK +K D
Sbjct: 269 ILIEVAVQYTED-FGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEYAKKYNFIKG-DT 326
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
L GE +R+G+T I+SV++ P+FEGQTKT+LGN E R V+ V E L +LE +PDV
Sbjct: 327 QLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSERLAAFLEENPDVS 386
Query: 239 DSILSKSLSALKAALAAKRARDLV-RQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K++ A KA AK+AR+LV ++KS L SS+LPGKLADCS P + EIFIVEGDS
Sbjct: 387 KKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDPAKCEIFIVEGDS 446
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRR+QAILPL GK+LNVE+ + +Y N+++ LI+ALG+G+ G D +
Sbjct: 447 AGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALGVGI-GNDIDLKK 505
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHK+II+ DADVDG+HIRTLLLTFFYRY + L + G IY+ PPLYK+ +GKQV+Y Y
Sbjct: 506 LRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLYKITKGKQVRYAY 565
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+D EL+K+ +QRFKGLGEM +LWETT++P +R+L ++ +EDA A +
Sbjct: 566 NDKELQKILQEMKDA---QVQRFKGLGEMNAQELWETTMDPARRILLRVELEDAVMAEEI 622
Query: 478 FSSLMGARVDTRKELIQ-NAANLVNLD 503
F+ LMG +V+ R+E I+ NA + NLD
Sbjct: 623 FTILMGDKVEPRREFIEKNAKYVRNLD 649
>gi|190710563|gb|ACE95112.1| gyrase subunit B [Bacillus thuringiensis serovar entomocidus]
Length = 627
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 244/498 (48%), Positives = 338/498 (67%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPSVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++ A EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQGAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQENA 625
>gi|193215259|ref|YP_001996458.1| DNA gyrase subunit B [Chloroherpeton thalassium ATCC 35110]
gi|193088736|gb|ACF14011.1| DNA gyrase, B subunit [Chloroherpeton thalassium ATCC 35110]
Length = 644
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 239/501 (47%), Positives = 335/501 (66%), Gaps = 13/501 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y +G P ++ + + GT+ F PD+ +F +F ++T+A R+RELA+
Sbjct: 149 FFQGYEKGIPKAPVSV----IGTTSENGTKTTFLPDESIFKNR-EFRYDTLADRMRELAY 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK-KPLHDVVGFRKDVDGITI 121
LN LTI + D + +E+ F GG++E+V ++++ + K + + + F + DG +
Sbjct: 204 LNKNLTIVI----EDERDGRRDEFHFKGGIQEFVTFMDSTRLKLIKEPIYFEGEKDGTVV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A Q+ +D+Y + Y N+I T +GGTH+ G + +LTRTLN G+K+ K+ ISL+
Sbjct: 260 EIAFQY-NDSYQENAFSYVNNINTHEGGTHVTGFRKALTRTLNYYGQKNDLFKNLKISLT 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT I+SV+VP P+FEGQTKT+LGN E + +V+ V E L EY+E HP+ + I
Sbjct: 319 GEDFREGLTAILSVKVPEPQFEGQTKTKLGNSETQSIVESIVNEKLAEYIEQHPNEVKII 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K +SA A AA++A+DL R+KS L SSSLPGKLADCS PE E++IVEGDSAGGS
Sbjct: 379 LEKVVSAAIARDAARKAKDLTRRKSALESSSLPGKLADCSINDPEHCELYIVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPL+GKILNVE+ M +NEEI+ LI ALG + ++F LRY
Sbjct: 439 AKQGRDRRFQAILPLKGKILNVEKARLNKMLENEEIRTLIMALGTSIGEDEFDASRLRYG 498
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KII++TDADVDGAHIRTLLLTFF+RY + L + G +++ PPLY ++ GKQ Y +DD E
Sbjct: 499 KIILMTDADVDGAHIRTLLLTFFFRYMRGLVEGGRVFIAQPPLYLIKSGKQQWYAWDDDE 558
Query: 422 LKKVKSSFPSNAL--YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
+ F Y IQR+KGLGEM QLW TT++PE+R L + IE+A EA+ +FS
Sbjct: 559 RDDILKQFEVKGKENYGIQRYKGLGEMNADQLWSTTMDPEKRTLLMVTIENAMEADKIFS 618
Query: 480 SLMGARVDTRKELIQNAANLV 500
+LMG +V+ R+ I+ A V
Sbjct: 619 TLMGDQVEPRRAFIETNAKYV 639
>gi|312621133|ref|YP_004022746.1| DNA gyrase subunit B [Caldicellulosiruptor kronotskyensis 2002]
gi|312201600|gb|ADQ44927.1| DNA gyrase, B subunit [Caldicellulosiruptor kronotskyensis 2002]
Length = 650
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 245/507 (48%), Positives = 349/507 (68%), Gaps = 22/507 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RGKP TC + + + DR GT++ F PD ++F T I+FD + I R+RELAF
Sbjct: 159 YYQRYERGKP----TCELKVIGTTDRTGTKVTFLPDDEIFET-IEFDGDVILQRLRELAF 213
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDG 118
LN + I R+++ P + +Y+ GG+ E+V++LN +K+ LH + + + +
Sbjct: 214 LNKGIRIVFVDEREKNVKPVELKYD-----GGIAEFVKFLNRNKEVLHQEPIYIEGEKND 268
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I I++A+Q+ D + + + +AN+I TIDGGTH+ G K ++T+ +N KK +K D
Sbjct: 269 ILIEIAIQYTED-FGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEYAKKYNFIKG-DT 326
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
L GE +R+G+T I+SV++ P+FEGQTKT+LGN E R V+ V E L +LE +PD+
Sbjct: 327 QLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSERLAAFLEENPDIS 386
Query: 239 DSILSKSLSALKAALAAKRARDLV-RQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K++ A KA AK+AR+LV ++KS L SS+LPGKLADCS P + EIFIVEGDS
Sbjct: 387 KKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDPAKCEIFIVEGDS 446
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRR+QAILPL GK+LNVE+ + +Y N+++ LI+ALG+G+ G D +
Sbjct: 447 AGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALGVGI-GNDIDLKK 505
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHK+II+ DADVDG+HIRTLLLTFFYRY + L + G IY+ PPLYK+ +GKQV+Y Y
Sbjct: 506 LRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLYKITKGKQVRYAY 565
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+D EL+KV +QRFKGLGEM +LWETT++P +R+L ++ +EDA A +
Sbjct: 566 NDKELQKVLQEMKDA---QVQRFKGLGEMNAQELWETTMDPARRILLRVELEDAVMAEEI 622
Query: 478 FSSLMGARVDTRKELIQ-NAANLVNLD 503
F+ LMG +V+ R+E I+ NA + NLD
Sbjct: 623 FTILMGDKVEPRREFIEKNAKYVRNLD 649
>gi|116871428|ref|YP_848209.1| DNA gyrase subunit B [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116740306|emb|CAK19424.1| DNA gyrase subunit B [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 646
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 248/504 (49%), Positives = 339/504 (67%), Gaps = 10/504 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y+Q++ RG V + D +GT + F PD Q+FT +FD +T+ R RELA
Sbjct: 150 KYYQRFERGDVVMDMEVQ----GETDYRGTIVHFTPDPQIFTETTEFDFDTLRTRTRELA 205
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGIT 120
FLN LTI++ ED E ++ + GG+ YV+ LN K +H+ + + D I
Sbjct: 206 FLNRGLTISI--EDKREEHKVRKDFHYEGGIRSYVEHLNKAKDVIHEPPIYLEGERDDIM 263
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++++Q+ + +S ++ +AN+I T +GGTH G K +LTR +N +++K KD D +L
Sbjct: 264 VEISMQYNT-GFSSNIISFANNIHTYEGGTHESGFKTALTRVINDYARRNKVFKDSDDNL 322
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGE VREGLT IIS++ P+P+FEGQTKT+LGN E R + D+ E L +++ +PDV
Sbjct: 323 SGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARSITDKLFSEALNKFMMENPDVAKK 382
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K + A +A LAAKRAR++ R+ S L SSLPGKLADCSS PE SE++IVEGDSAGG
Sbjct: 383 IVEKGVVASRARLAAKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGG 442
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILP+RGKILNVE+ + NEEI+ + A+G G G DF RY
Sbjct: 443 SAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGG-DFDVSKSRY 501
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK+II+TDADVDGAHIRTLLLT FYRY + L D G IY+ PPLY+++ GKQ++Y Y D
Sbjct: 502 HKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDG 561
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+L+ +S + YSIQR+KGLGEM P QLW+TT+NPE R L Q+ I+DA +A+ F
Sbjct: 562 QLEDYLASLDKDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQVNIKDAIDADETFEM 621
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG RV+ R++ I +NA + NLD
Sbjct: 622 LMGDRVEPRRKFIEENAQYVKNLD 645
>gi|222150258|ref|YP_002559411.1| DNA gyrase subunit B [Macrococcus caseolyticus JCSC5402]
gi|222119380|dbj|BAH16715.1| DNA gyrase subunit B [Macrococcus caseolyticus JCSC5402]
Length = 642
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/502 (47%), Positives = 337/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y RG P L + D+ GT IRF D ++FT ++++ + RIRELAF
Sbjct: 147 YHQAYHRGVPAFDLKV----IGETDKTGTVIRFKADSEIFTETTEYEYEILQKRIRELAF 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + + + K++ + ++ +++ Y + GG++ YV+ LN K+ L + + + D I +
Sbjct: 203 LNKGIKLEI-KDEREQDEIRHDVYHYEGGIKSYVELLNKSKETLFPEPIYIHDNRDEIEV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ ++ YS +L YAN+I T +GGTH +G K +LTR +NS G K+K +K+ D LS
Sbjct: 262 EISIQY-NNGYSTNLLSYANNIHTYEGGTHEDGFKRALTRVINSYGVKNKLIKEADEKLS 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG+T I+S++ NP+FEGQTKT+LGN EVR++ D E +L +P + I
Sbjct: 321 GEDVREGITAIVSIKHGNPQFEGQTKTKLGNTEVRQITDNLFAENFERFLLENPPIARII 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A LAAK+AR++ R+KS L SSLPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 381 VEKGIMASRARLAAKKAREVTRRKSGLEISSLPGKLADCSSKDPSISELYIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRD + QAILPLRGKILNVE+ + N EI+++I A+G G+ GE F RYH
Sbjct: 441 AKSGRDSKTQAILPLRGKILNVEKARLDRILGNNEIRSMITAMGTGIGGE-FDISKARYH 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPL+KVE+GK+ Y Y++ E
Sbjct: 500 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLLEAGYVYIAQPPLFKVEQGKKKYYVYNERE 559
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K++ P+ + + R+KGLGEM QLWETT+NPE R + Q+ + DA EA+ VF L
Sbjct: 560 LDKLRKELPTTPKWQLARYKGLGEMNADQLWETTMNPEHRSMLQVTLSDAIEADEVFEML 619
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R+ I+ A N+D
Sbjct: 620 MGDVVEHRRTFIEENAEYANVD 641
>gi|168183732|ref|ZP_02618396.1| DNA gyrase, B subunit [Clostridium botulinum Bf]
gi|237793326|ref|YP_002860878.1| DNA gyrase subunit B [Clostridium botulinum Ba4 str. 657]
gi|182673147|gb|EDT85108.1| DNA gyrase, B subunit [Clostridium botulinum Bf]
gi|229263377|gb|ACQ54410.1| DNA gyrase, B subunit [Clostridium botulinum Ba4 str. 657]
Length = 637
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 251/502 (50%), Positives = 353/502 (70%), Gaps = 14/502 (2%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
QKY RG P T L V ++ GT+I F PD ++F ++F+++T+A R+RELAFLN
Sbjct: 146 QKYERGIPKTGLDI----VGDTEKHGTKIYFKPDVEIFD-ELEFEYDTLAQRLRELAFLN 200
Query: 65 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITIDL 123
+ I+L E D ++ + + GGL +V +LN +K+ LH + K+ DG +++
Sbjct: 201 KGIKISLTDERYDKQEM----FHYEGGLRSFVLYLNRNKEKLHQQPIYVDKNKDGCIVEI 256
Query: 124 ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGE 183
A+Q+ +D Y++ + +AN+I TI+GGTH+ G K++LTR +N +K +KD D +LSG+
Sbjct: 257 AMQY-NDGYAENIFSFANNIDTIEGGTHLAGFKSALTRAINDYARKFNYLKDTDKNLSGD 315
Query: 184 HVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILS 243
VREGLT +ISV++ +P+FEGQTKT+LGN EVR +VD V E + +LE +P+V I+
Sbjct: 316 DVREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDTIVGESIGSFLEENPNVGKIIIE 375
Query: 244 KSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAK 303
K LSA +A AAKRAR+L R+KSVL S+SLPGKLADCSS P EI++VEGDSAGGSAK
Sbjct: 376 KGLSASRAREAAKRARELTRRKSVLESTSLPGKLADCSSKDPSLCEIYLVEGDSAGGSAK 435
Query: 304 QGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKI 363
QGR+R FQAILPL+GKI+NVE++ + ++EI+ +I A G G+ G++F E +RY++I
Sbjct: 436 QGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITAFGAGI-GKEFNLEKIRYNRI 494
Query: 364 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELK 423
II+TDADVDGAHIRTLLLTFFYRY K L +EG +Y+ PPLY++ + K+ Y Y D EL
Sbjct: 495 IIMTDADVDGAHIRTLLLTFFYRYMKELVEEGHVYIAQPPLYRIYKAKKELYVYSDKELD 554
Query: 424 KVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
+ + +IQR+KGLGEM P QLWETT+NPE R L Q+ IEDA A+ +F+ LM
Sbjct: 555 EALLELGGKDTNTNIQRYKGLGEMDPEQLWETTMNPEHRTLLQVTIEDAMAADEIFTILM 614
Query: 483 GARVDTRKELIQNAAN-LVNLD 503
G +V+ R++ I+N A+ +VNLD
Sbjct: 615 GTKVEPRRDFIENNADKVVNLD 636
>gi|404406489|ref|YP_006689204.1| DNA gyrase subunit B [Listeria monocytogenes SLCC2376]
gi|422810893|ref|ZP_16859304.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-208]
gi|378751098|gb|EHY61689.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-208]
gi|404240638|emb|CBY62038.1| DNA gyrase, B subunit [Listeria monocytogenes SLCC2376]
Length = 646
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 249/504 (49%), Positives = 339/504 (67%), Gaps = 10/504 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y+Q++ RG V + D +GT + F PD Q+FT +FD +T+ R RELA
Sbjct: 150 KYYQRFERGDVVMDMEEQ----GETDYRGTIVHFTPDPQIFTETTEFDFDTLRTRTRELA 205
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGIT 120
FLN LTI++ ED E ++ + GG+ YV+ LN K +H+ + + D I
Sbjct: 206 FLNRGLTISI--EDKREEHKVRKDFHYEGGIRSYVEHLNKAKDVIHEPPIYLEGERDDIM 263
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++++Q+ + +S ++ +AN+I T +GGTH G K +LTR +N +++K KD D +L
Sbjct: 264 VEISMQYNT-GFSSNIISFANNIHTYEGGTHESGFKTALTRVINDYARRNKLFKDSDDNL 322
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGE VREGLT IIS++ P+P+FEGQTKT+LGN E R + D+ E L +++ +PDV
Sbjct: 323 SGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARSITDKLFSEALNKFMMENPDVAKK 382
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K + A +A LAAKRAR++ R+ S L SSLPGKLADCSS PE SE++IVEGDSAGG
Sbjct: 383 IVEKGVVASRARLAAKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGG 442
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILP+RGKILNVE+ + NEEI+ + A+G G G DF RY
Sbjct: 443 SAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGG-DFDVSKSRY 501
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK+II+TDADVDGAHIRTLLLT FYRY + L D G IY+ PPLY+++ GKQV+Y Y D
Sbjct: 502 HKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQVEYVYSDG 561
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+L+ +S + YSIQR+KGLGEM P QLW+TT+NPE R L Q+ I+DA +A+ F
Sbjct: 562 QLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQVNIKDAIDADETFEM 621
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG RV+ R++ I++ A V NLD
Sbjct: 622 LMGDRVEPRRKFIEDNAQYVKNLD 645
>gi|424835717|ref|ZP_18260376.1| DNA gyrase subunit B [Clostridium sporogenes PA 3679]
gi|365977587|gb|EHN13685.1| DNA gyrase subunit B [Clostridium sporogenes PA 3679]
Length = 637
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 251/502 (50%), Positives = 353/502 (70%), Gaps = 14/502 (2%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
QKY RG P T L V ++ GT+I F PD ++F ++F+++T+A R+RELAFLN
Sbjct: 146 QKYERGIPKTGLDI----VGDTEKHGTKIYFKPDVEIFD-ELEFEYDTLAQRLRELAFLN 200
Query: 65 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITIDL 123
+ I+L E D ++ + + GGL +V +LN +K+ LH + K+ DG +++
Sbjct: 201 KGIKISLTDERYDKQEM----FHYEGGLRSFVLYLNRNKEKLHQQPIYVDKNKDGCIVEI 256
Query: 124 ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGE 183
A+Q+ +D Y++ + +AN+I TI+GGTH+ G K++LTR +N +K +KD D +LSG+
Sbjct: 257 AMQY-NDGYAENIFSFANNIDTIEGGTHLAGFKSALTRAINDYARKFNYLKDIDKNLSGD 315
Query: 184 HVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILS 243
VREGLT +ISV++ +P+FEGQTKT+LGN EVR +VD V E + +LE +P+V I+
Sbjct: 316 DVREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDTIVGESIGSFLEENPNVGKIIIE 375
Query: 244 KSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAK 303
K LSA +A AAKRAR+L R+KSVL S+SLPGKLADCSS P EI++VEGDSAGGSAK
Sbjct: 376 KGLSASRAREAAKRARELTRRKSVLESTSLPGKLADCSSKDPSLCEIYLVEGDSAGGSAK 435
Query: 304 QGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKI 363
QGR+R FQAILPL+GKI+NVE++ + ++EI+ +I A G G+ G++F E +RY++I
Sbjct: 436 QGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITAFGAGI-GKEFNLEKIRYNRI 494
Query: 364 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELK 423
II+TDADVDGAHIRTLLLTFFYRY K L +EG +Y+ PPLY++ + K+ Y Y D EL
Sbjct: 495 IIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHVYIAQPPLYRIYKAKKELYVYSDKELD 554
Query: 424 KVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
+ + +IQR+KGLGEM P QLWETT+NPE R L Q+ IEDA A+ +F+ LM
Sbjct: 555 EALLELGGKDTNTNIQRYKGLGEMDPEQLWETTMNPEHRTLLQVTIEDAMAADEIFTILM 614
Query: 483 GARVDTRKELIQNAAN-LVNLD 503
G +V+ R++ I+N A+ +VNLD
Sbjct: 615 GTKVEPRRDFIENNADKVVNLD 636
>gi|452992024|emb|CCQ96561.1| DNA gyrase (subunit B) [Clostridium ultunense Esp]
Length = 637
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 243/502 (48%), Positives = 341/502 (67%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y RG P L ++ S + GT I F PD ++FT +FD++ + RIRELAF
Sbjct: 143 YRQTYHRGVPEGPLK--IVGEISPEISGTTITFKPDPEIFTETTEFDYDVLQSRIRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN + + L +D N+ E+ + GG+ E+V +LN ++ LH + +GI ++
Sbjct: 201 LNKGIKLTL----TDERTNRREEFHYEGGIAEFVLFLNKNRNVLHSPIYMHDQREGIDVE 256
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+A+Q+ D +S + +AN+I T +GGTH G K LTR +N +K+ +K+ + +L+G
Sbjct: 257 IAIQY-HDEFSTNLYSFANNIHTHEGGTHEVGFKTGLTRVINDYARKNNLLKENEENLTG 315
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+ VREGLT IISV++P P+FEGQTKT+LGN E + + + E+ + +L+ +P V I+
Sbjct: 316 DDVREGLTAIISVKIPEPQFEGQTKTKLGNSEAKTITESLFSEHFSTFLDENPSVAKKII 375
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K++ A +A AA++AR+L R+K+ L SSLPGKLADCSS SE++IVEGDSAGGSA
Sbjct: 376 EKAVLASRAREAARKARELTRRKNALEVSSLPGKLADCSSRDASISELYIVEGDSAGGSA 435
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQGRDR FQAILPLRGKILNVE+ + NEEI+ +I ALG G+ G++ RYHK
Sbjct: 436 KQGRDRNFQAILPLRGKILNVEKARLDKILSNEEIRAMITALGTGI-GDELDITKARYHK 494
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
III+TDADVDGAHIRTLLLTFFYR+ +TL + G IY+ PPLY++ +GK+V Y Y ++EL
Sbjct: 495 IIIMTDADVDGAHIRTLLLTFFYRHMRTLVENGFIYIAQPPLYRISQGKKVLYAYKESEL 554
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
+KVK S IQR+KGLGEM P QLWETT+NP+ R+L ++ +EDA EA+ +F +LM
Sbjct: 555 EKVKKSLQGKGEIEIQRYKGLGEMDPEQLWETTMNPKNRILLRVHLEDAMEADQIFDTLM 614
Query: 483 GARVDTRKELIQNAANLV-NLD 503
G RV+ R++ I + A+ V NLD
Sbjct: 615 GDRVEPRRDFIHDHAHYVRNLD 636
>gi|16802054|ref|NP_463539.1| DNA gyrase subunit B [Listeria monocytogenes EGD-e]
gi|46906230|ref|YP_012619.1| DNA gyrase subunit B [Listeria monocytogenes serotype 4b str.
F2365]
gi|47093016|ref|ZP_00230795.1| DNA gyrase, B subunit [Listeria monocytogenes str. 4b H7858]
gi|47097288|ref|ZP_00234846.1| DNA gyrase, B subunit [Listeria monocytogenes str. 1/2a F6854]
gi|226222645|ref|YP_002756752.1| DNA gyrase subunit B [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254824774|ref|ZP_05229775.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-194]
gi|254827430|ref|ZP_05232117.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|254851836|ref|ZP_05241184.1| DNA gyrase subunit B [Listeria monocytogenes FSL R2-503]
gi|254913117|ref|ZP_05263129.1| DNA gyrase subunit B [Listeria monocytogenes J2818]
gi|254930863|ref|ZP_05264222.1| DNA gyrase subunit B [Listeria monocytogenes HPB2262]
gi|254937498|ref|ZP_05269195.1| DNA gyrase subunit B [Listeria monocytogenes F6900]
gi|254994017|ref|ZP_05276207.1| DNA gyrase subunit B [Listeria monocytogenes FSL J2-064]
gi|255520064|ref|ZP_05387301.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-175]
gi|284803260|ref|YP_003415125.1| DNA gyrase subunit B [Listeria monocytogenes 08-5578]
gi|284996401|ref|YP_003418169.1| DNA gyrase subunit B [Listeria monocytogenes 08-5923]
gi|300763380|ref|ZP_07073378.1| DNA gyrase, B subunit [Listeria monocytogenes FSL N1-017]
gi|386042353|ref|YP_005961158.1| DNA gyrase subunit B [Listeria monocytogenes 10403S]
gi|386045640|ref|YP_005963972.1| B subunit [Listeria monocytogenes J0161]
gi|386048936|ref|YP_005966927.1| DNA gyrase subunit B [Listeria monocytogenes FSL R2-561]
gi|386052279|ref|YP_005969837.1| DNA gyrase subunit B [Listeria monocytogenes Finland 1998]
gi|386730767|ref|YP_006204263.1| DNA gyrase subunit B [Listeria monocytogenes 07PF0776]
gi|404279558|ref|YP_006680456.1| DNA gyrase subunit B [Listeria monocytogenes SLCC2755]
gi|404282436|ref|YP_006683333.1| DNA gyrase subunit B [Listeria monocytogenes SLCC2372]
gi|404285373|ref|YP_006691959.1| DNA gyrase subunit B [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|404409245|ref|YP_006694833.1| DNA gyrase subunit B [Listeria monocytogenes SLCC5850]
gi|404412112|ref|YP_006697699.1| DNA gyrase subunit B [Listeria monocytogenes SLCC7179]
gi|405748341|ref|YP_006671807.1| DNA gyrase subunit B [Listeria monocytogenes ATCC 19117]
gi|405751210|ref|YP_006674675.1| DNA gyrase subunit B [Listeria monocytogenes SLCC2378]
gi|405754085|ref|YP_006677549.1| DNA gyrase subunit B [Listeria monocytogenes SLCC2540]
gi|405756993|ref|YP_006686269.1| DNA gyrase subunit B [Listeria monocytogenes SLCC2479]
gi|406702781|ref|YP_006753135.1| DNA gyrase, B subunit [Listeria monocytogenes L312]
gi|417314056|ref|ZP_12100762.1| DNA gyrase subunit B [Listeria monocytogenes J1816]
gi|424712856|ref|YP_007013571.1| DNA gyrase subunit B [Listeria monocytogenes serotype 4b str.
LL195]
gi|424821659|ref|ZP_18246672.1| DNA gyrase subunit B [Listeria monocytogenes str. Scott A]
gi|21328234|gb|AAM48481.1|AF084042_1 DNA gyrase subunit B [Listeria monocytogenes]
gi|16409365|emb|CAC98221.1| DNA gyrase subunit B [Listeria monocytogenes EGD-e]
gi|46879494|gb|AAT02796.1| DNA gyrase, B subunit [Listeria monocytogenes serotype 4b str.
F2365]
gi|47014333|gb|EAL05308.1| DNA gyrase, B subunit [Listeria monocytogenes str. 1/2a F6854]
gi|47018584|gb|EAL09338.1| DNA gyrase, B subunit [Listeria monocytogenes str. 4b H7858]
gi|225875107|emb|CAS03795.1| DNA gyrase subunit B [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|258599808|gb|EEW13133.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|258605128|gb|EEW17736.1| DNA gyrase subunit B [Listeria monocytogenes FSL R2-503]
gi|258610100|gb|EEW22708.1| DNA gyrase subunit B [Listeria monocytogenes F6900]
gi|284058822|gb|ADB69763.1| DNA gyrase subunit B [Listeria monocytogenes 08-5578]
gi|284061868|gb|ADB72807.1| DNA gyrase subunit B [Listeria monocytogenes 08-5923]
gi|293582408|gb|EFF94440.1| DNA gyrase subunit B [Listeria monocytogenes HPB2262]
gi|293591119|gb|EFF99453.1| DNA gyrase subunit B [Listeria monocytogenes J2818]
gi|293594013|gb|EFG01774.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-194]
gi|300515657|gb|EFK42706.1| DNA gyrase, B subunit [Listeria monocytogenes FSL N1-017]
gi|328468327|gb|EGF39333.1| DNA gyrase subunit B [Listeria monocytogenes J1816]
gi|332310339|gb|EGJ23434.1| DNA gyrase subunit B [Listeria monocytogenes str. Scott A]
gi|345532631|gb|AEO02072.1| B subunit [Listeria monocytogenes J0161]
gi|345535587|gb|AEO05027.1| DNA gyrase, B subunit [Listeria monocytogenes 10403S]
gi|346422782|gb|AEO24307.1| DNA gyrase subunit B [Listeria monocytogenes FSL R2-561]
gi|346644930|gb|AEO37555.1| DNA gyrase, B subunit [Listeria monocytogenes Finland 1998]
gi|384389525|gb|AFH78595.1| DNA gyrase subunit B [Listeria monocytogenes 07PF0776]
gi|404217541|emb|CBY68905.1| DNA gyrase, B subunit [Listeria monocytogenes ATCC 19117]
gi|404220410|emb|CBY71773.1| DNA gyrase, B subunit [Listeria monocytogenes SLCC2378]
gi|404223285|emb|CBY74647.1| DNA gyrase, B subunit [Listeria monocytogenes SLCC2540]
gi|404226193|emb|CBY47598.1| DNA gyrase, B subunit [Listeria monocytogenes SLCC2755]
gi|404229071|emb|CBY50475.1| DNA gyrase, B subunit [Listeria monocytogenes SLCC5850]
gi|404231938|emb|CBY53341.1| DNA gyrase, B subunit [Listeria monocytogenes SLCC2372]
gi|404234875|emb|CBY56277.1| DNA gyrase, B subunit [Listeria monocytogenes SLCC2479]
gi|404237811|emb|CBY59212.1| DNA gyrase, B subunit [Listeria monocytogenes SLCC7179]
gi|404244302|emb|CBY02527.1| DNA gyrase, B subunit [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406359811|emb|CBY66084.1| DNA gyrase, B subunit [Listeria monocytogenes L312]
gi|424012040|emb|CCO62580.1| DNA gyrase subunit B [Listeria monocytogenes serotype 4b str.
LL195]
gi|441469553|emb|CCQ19308.1| DNA gyrase subunit B [Listeria monocytogenes]
gi|441472685|emb|CCQ22439.1| DNA gyrase subunit B [Listeria monocytogenes N53-1]
Length = 646
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 248/504 (49%), Positives = 339/504 (67%), Gaps = 10/504 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y+Q++ RG V + D +GT + F PD Q+FT +FD +T+ R RELA
Sbjct: 150 KYYQRFERGDVVMDMEEQ----GETDYRGTIVHFTPDPQIFTETTEFDFDTLRTRTRELA 205
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGIT 120
FLN LTI++ ED E ++ + GG+ YV+ LN K +H+ + + D I
Sbjct: 206 FLNRGLTISI--EDKREEHKVRKDFHYEGGIRSYVEHLNKAKDVIHEPPIYLEGERDDIM 263
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++++Q+ + +S ++ +AN+I T +GGTH G K +LTR +N +++K KD D +L
Sbjct: 264 VEISMQYNT-GFSSNIISFANNIHTYEGGTHESGFKTALTRVINDYARRNKLFKDSDDNL 322
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGE VREGLT IIS++ P+P+FEGQTKT+LGN E R + D+ E L +++ +PDV
Sbjct: 323 SGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARSITDKLFSEALNKFMMENPDVAKK 382
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K + A +A LAAKRAR++ R+ S L SSLPGKLADCSS PE SE++IVEGDSAGG
Sbjct: 383 IVEKGVVASRARLAAKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGG 442
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILP+RGKILNVE+ + NEEI+ + A+G G G DF RY
Sbjct: 443 SAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGG-DFDVSKSRY 501
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK+II+TDADVDGAHIRTLLLT FYRY + L D G IY+ PPLY+++ GKQ++Y Y D
Sbjct: 502 HKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDG 561
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+L+ +S + YSIQR+KGLGEM P QLW+TT+NPE R L Q+ I+DA +A+ F
Sbjct: 562 QLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQVNIKDAIDADETFEM 621
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG RV+ R++ I++ A V NLD
Sbjct: 622 LMGDRVEPRRKFIEDNAQYVKNLD 645
>gi|347547515|ref|YP_004853843.1| putative DNA gyrase subunit B [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346980586|emb|CBW84487.1| Putative DNA gyrase subunit B [Listeria ivanovii subsp. ivanovii
PAM 55]
Length = 646
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 248/504 (49%), Positives = 339/504 (67%), Gaps = 10/504 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y+Q++ RG V + D +GT + F PD Q+FT +FD +T+ R RELA
Sbjct: 150 KYYQRFERGDVVMDMEEQ----GETDYRGTIVHFTPDPQIFTETTEFDFDTLRTRTRELA 205
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGIT 120
FLN LTI++ ED E ++ + GG+ YV+ LN K +H+ + + D I
Sbjct: 206 FLNRGLTISI--EDKREEHKVRKDFHYEGGIRSYVEHLNKAKDVIHEPPIYLEGERDDIM 263
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++++Q+ + +S ++ +AN+I T +GGTH G K +LTR +N +++K KD D +L
Sbjct: 264 VEISMQYNT-GFSSNIISFANNIHTYEGGTHESGFKTALTRVINDYARRNKVFKDSDDNL 322
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGE VREGLT IIS++ P+P+FEGQTKT+LGN E R + D+ E L +++ +PDV
Sbjct: 323 SGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARSITDKLFSEALNKFMMENPDVAKK 382
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K + A +A LAAKRAR++ R+ S L SSLPGKLADCSS PE SE++IVEGDSAGG
Sbjct: 383 IVEKGVVASRARLAAKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGG 442
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILP+RGKILNVE+ + NEEI+ + A+G G G DF RY
Sbjct: 443 SAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGG-DFDVSKARY 501
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK+II+TDADVDGAHIRTLLLT FYRY + L D G IY+ PPLY+++ GKQ++Y Y D
Sbjct: 502 HKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDG 561
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+L+ +S + YSIQR+KGLGEM P QLW+TT+NPE R L Q+ I+DA +A+ F
Sbjct: 562 QLEDYLASLDKDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQVNIKDAIDADETFEM 621
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG RV+ R++ I +NA + NLD
Sbjct: 622 LMGDRVEPRRKFIEENAQYVKNLD 645
>gi|452991700|emb|CCQ96924.1| DNA gyrase (subunit B) [Clostridium ultunense Esp]
Length = 636
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 246/504 (48%), Positives = 350/504 (69%), Gaps = 14/504 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY QK+ RG PV+ L V GT I F PDK++F + F+ T+ R+RE+A
Sbjct: 144 EYMQKFERGVPVSELQI----VGEAKTTGTLINFKPDKEIFD-EVDFNFETLEYRLREMA 198
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
FLN + I L D N ++ + GG++ +V+++N +K P+H D++ F + D I
Sbjct: 199 FLNKGIMIKL----EDRRTNTNRKFHYEGGIKSFVEYINRNKNPIHKDIMYFEAEKDNIV 254
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
++LA+Q+ +DAYS+ + +AN+I T +GGTH+ G++ +LTR +N G+K +K+KD +L
Sbjct: 255 VELAMQY-TDAYSENIYTFANNINTQEGGTHLSGLRTALTRAINDYGRKYNYIKEKDENL 313
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
G+ VREGL+ ++SV++ P+FEGQTKT+LGN EVR +V+ +++T YLE +P
Sbjct: 314 QGDDVREGLSAVLSVKLMEPQFEGQTKTKLGNSEVRGIVESLTYDFITRYLEENPKSGKI 373
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
+L K++SA +A AA++AR++ R++S+L +++LPGKLADC S E +EI+IVEGDSAGG
Sbjct: 374 VLEKAVSASRAREAARKAREISRKRSILDNTTLPGKLADCQSNDLEITEIYIVEGDSAGG 433
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR +QAILPLRGKILNVE+ + EEI+ +I A G G+ G++F E LRY
Sbjct: 434 SAKQGRDRGYQAILPLRGKILNVEKARLDRILGYEEIRAMITAFGTGI-GDEFDIEKLRY 492
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
KIII+TDADVDGAHIRTLLLTFF+RY + L D G +Y+ PPLYKV +G+ Y Y D
Sbjct: 493 GKIIIMTDADVDGAHIRTLLLTFFFRYMRELLDNGHVYIAQPPLYKVSKGRAEHYVYSDN 552
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+K+ + YSIQR+KGLGEM P QLWETT++PE+R+L Q+ +ED A+ +F++
Sbjct: 553 ELEKLLEEI-GRSNYSIQRYKGLGEMNPEQLWETTMDPEKRILLQVTVEDGLVADEIFTT 611
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG +V R+E IQ A LV NLD
Sbjct: 612 LMGDKVKPRREFIQKNAKLVKNLD 635
>gi|190710575|gb|ACE95118.1| gyrase subunit B [Bacillus thuringiensis serovar kenyae]
Length = 627
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 243/498 (48%), Positives = 339/498 (68%), Gaps = 14/498 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F +D +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 429 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+K+++GK++QY Y+D
Sbjct: 488 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYND 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P +WETT++PE R L Q+ ++DA EA+ F
Sbjct: 548 KELEKILAELPAQPKPGIQRYKGLGEMNPTLIWETTMDPEVRSLLQVSLQDAIEADETFE 607
Query: 480 SLMGARVDTRKELIQNAA 497
LMG +V+ R+ IQ A
Sbjct: 608 ILMGDKVEPRRNFIQENA 625
>gi|217965929|ref|YP_002351607.1| DNA gyrase subunit B [Listeria monocytogenes HCC23]
gi|386006719|ref|YP_005924997.1| DNA gyrase subunit B [Listeria monocytogenes L99]
gi|386025294|ref|YP_005946070.1| DNA gyrase subunit B [Listeria monocytogenes M7]
gi|217335199|gb|ACK40993.1| DNA gyrase, B subunit [Listeria monocytogenes HCC23]
gi|307569529|emb|CAR82708.1| DNA gyrase, B subunit [Listeria monocytogenes L99]
gi|336021875|gb|AEH91012.1| DNA gyrase subunit B [Listeria monocytogenes M7]
Length = 646
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 249/504 (49%), Positives = 338/504 (67%), Gaps = 10/504 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y+Q++ RG V + D +GT + F PD Q+FT +FD +T+ R RELA
Sbjct: 150 KYYQRFERGDVVMDMEEQ----GETDYRGTIVHFTPDPQIFTETTEFDFDTLRTRTRELA 205
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGIT 120
FLN LTI++ ED E ++ + GG+ YV+ LN K +H+ + + D I
Sbjct: 206 FLNRGLTISI--EDKREEHKVRKDFHYEGGIRSYVEHLNKAKDVIHEPPIYLEGERDDIM 263
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++++Q+ + +S ++ +AN+I T +GGTH G K +LTR +N +++K KD D +L
Sbjct: 264 VEISMQYNT-GFSSNIISFANNIHTYEGGTHESGFKTALTRVINDYARRNKLFKDSDDNL 322
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGE VREGLT IIS++ P+P+FEGQTKT+LGN E R + D+ E L +++ +PDV
Sbjct: 323 SGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARSITDKLFSEALNKFMMENPDVAKK 382
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K + A +A LAAKRAR++ R+ S L SSLPGKLADCSS PE SE++IVEGDSAGG
Sbjct: 383 IVEKGVVASRARLAAKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGG 442
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILP+RGKILNVE+ + NEEI+ + A+G G G DF RY
Sbjct: 443 SAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGG-DFDVSKSRY 501
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK+II+TDADVDGAHIRTLLLT FYRY + L D G IY+ PPLY+++ GKQV+Y Y D
Sbjct: 502 HKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQVEYVYSDG 561
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+L+ +S + YSIQR+KGLGEM P QLW TT+NPE R L Q+ I+DA +A+ F
Sbjct: 562 QLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWNTTMNPEHRTLLQVNIKDAIDADETFEM 621
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG RV+ R++ I++ A V NLD
Sbjct: 622 LMGDRVEPRRKFIEDNAQYVKNLD 645
>gi|310657321|ref|YP_003935042.1| DNA gyrase (subunit B) [[Clostridium] sticklandii]
gi|308824099|emb|CBH20137.1| DNA gyrase (subunit B) [[Clostridium] sticklandii]
Length = 641
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/503 (47%), Positives = 345/503 (68%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+++ G P T L V +GT +RF PD VF Q+ ++T+ R+RELAF
Sbjct: 147 YRQEFAYGVPQTELEI----VGETTERGTCVRFMPDDAVFEET-QYKYDTLEHRLRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L ED + + E+ + GGL E+V+++N +K P+HD V+ F K T+
Sbjct: 202 LNKGIHITL--EDKREDLQKVKEFHYTGGLVEFVRYINKNKSPIHDDVIYFEKKQGDYTV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +DAY + + +AN+I T +GG H+ G K +LTR +N KKS +K K+ +L
Sbjct: 260 EIAMQY-TDAYVENVYSFANNINTHEGGMHLTGFKTALTRVINDYAKKSNFLKSKEDNLM 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT ++S+++P+P++EGQTKT+LGNP+ R V+ + +T +L+ +P I
Sbjct: 319 GEDIREGLTAVVSIKLPDPQYEGQTKTKLGNPQARSAVETISGDNITIFLDENPASARII 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AAK+AR+L R+KSVL S+SLPGKLADC+ P +SEI++VEGDSAGGS
Sbjct: 379 VDKALRAQRAREAAKKARELTRRKSVLESTSLPGKLADCAEKDPVKSEIYLVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+ QAILPLRGKILNVE+ + ++EI+N+I A G G+ E F +E LRYH
Sbjct: 439 AKQGRDRKTQAILPLRGKILNVEKSRLDRILSSDEIRNMITAFGCGISNE-FDEEKLRYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTL+LTFF+RY + L ++G +Y+ PPL+++++G++ +Y Y D E
Sbjct: 498 KIVIMTDADVDGAHIRTLILTFFFRYMRPLIEKGYVYIAQPPLFRIKKGRREEYVYSDKE 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + + +QR+KGLGEM QLW+TT+NP R L ++ IEDA+ A+ +FS L
Sbjct: 558 LNERLEEIGRSNQVELQRYKGLGEMNAEQLWDTTMNPATRTLLRVTIEDASMADDIFSML 617
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ IQ NA + NLD
Sbjct: 618 MGDKVEPRRNFIQENAKYVKNLD 640
>gi|317495092|ref|ZP_07953463.1| DNA gyrase, subunit B [Gemella morbillorum M424]
gi|316914799|gb|EFV36274.1| DNA gyrase, subunit B [Gemella morbillorum M424]
Length = 643
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 231/502 (46%), Positives = 346/502 (68%), Gaps = 10/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ K+ RG+ V +T + D+ GT +RF D ++F ++++ + RIRELAF
Sbjct: 150 HSMKFERGEVVQGITV----IGETDKTGTTVRFKADPEIFQETTVYEYDILRSRIRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN +TI L+ E + EK + ++ + GGL EYV+ LN +K LH+ + +++G ++
Sbjct: 206 LNKGITIVLKDERENQEKEE--DFCYEGGLLEYVEMLNENKDALHEAIYVHGEMEGKEVE 263
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+++Q+ + YS +L YAN+I T +GGTH G K +LTR +N+ GKK+K +K+K+ +L+G
Sbjct: 264 ISMQYNT-GYSSNILSYANNINTHEGGTHESGFKTALTRIINAYGKKNKLIKEKE-TLTG 321
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+ VREGL IIS++ PNP+FEGQTKT+LGN E+ + ++ E L +L +P V I+
Sbjct: 322 DDVREGLVAIISIKHPNPQFEGQTKTKLGNSEMSTITNKLFSEELDRFLLENPKVAKIIV 381
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K L A +A +AAK+AR+ R+K+ L ++LPGKLADCSS E E+F+VEGDSAGGSA
Sbjct: 382 EKGLQASRARIAAKKARESTRRKNALEFTNLPGKLADCSSKDAAECELFLVEGDSAGGSA 441
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
K GRD +FQAILPL+GKILNVE+ + ++EI++LI A+G+G+ GE + LRYHK
Sbjct: 442 KLGRDSKFQAILPLKGKILNVEKVRIDKVLSSDEIRSLITAVGMGI-GETLNMDKLRYHK 500
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
I+I+TDADVDG+HIRTLLLTFF+RY + L D G +Y+ PPLY ++ GK+ YC+ + EL
Sbjct: 501 IVIMTDADVDGSHIRTLLLTFFFRYMRELIDAGYVYIARPPLYGLKVGKKEYYCHTEEEL 560
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
K+ F + Y++QR+KGLGEM +LW+TT++P+ R++ Q+ I DA A+ F +LM
Sbjct: 561 KQHIEEFAGDKKYAVQRYKGLGEMNAEELWDTTMDPKHRLMYQVSIGDAQRADAAFDTLM 620
Query: 483 GARVDTRKELI-QNAANLVNLD 503
G +V+ R++ I +NA N++NLD
Sbjct: 621 GEKVEPRRKFIEENALNVINLD 642
>gi|392970924|ref|ZP_10336322.1| DNA gyrase subunit B [Staphylococcus equorum subsp. equorum Mu2]
gi|392510926|emb|CCI59581.1| DNA gyrase subunit B [Staphylococcus equorum subsp. equorum Mu2]
Length = 640
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 248/503 (49%), Positives = 335/503 (66%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDR-QGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
YHQ Y +G P L + D+ GT IRF D ++FT +++++T+ R RELA
Sbjct: 145 YHQAYKKGVPQFDLKV----IGETDKPTGTVIRFKADPEIFTETTEYNYDTLQQRTRELA 200
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
FLN ++I LR E E+ + + Y + GG++ YV+ LN K+PLHD + + D I
Sbjct: 201 FLNKGISITLRDERE--EEVREDSYHYEGGIKSYVEMLNETKEPLHDEPIYVHESKDDIE 258
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++ALQ+ + Y+ +L YAN+I T +GGTH EG K +L+R LNS G SK +K+ L
Sbjct: 259 VEIALQY-NKGYATNLLTYANNIHTYEGGTHEEGFKRALSRVLNSYGLNSKIIKEDKERL 317
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ E +L +P V
Sbjct: 318 SGEDTREGLTAVVSIKHSDPQFEGQTKTKLGNSEVRQVVDKLFAELFERFLYENPQVGRI 377
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
++ KS+ A A LAAK+AR++ R+KS L SSLPGKLADCSS P SEIFIVEGDSAGG
Sbjct: 378 VVEKSIMASHARLAAKKAREVTRRKSALEISSLPGKLADCSSKDPSRSEIFIVEGDSAGG 437
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
S K GRD QAILPLRGKILNVE+ + N EI+++I A G G+ GE F RY
Sbjct: 438 STKSGRDSETQAILPLRGKILNVEKARLDRILNNNEIRSMITAFGTGIGGE-FDLSKARY 496
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKI+++TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPL+K+ +GKQ Y +++
Sbjct: 497 HKIVLMTDADVDGAHIRTLLLTFFYRFMRPLLEAGYVYIAQPPLFKLTQGKQKYYVFNER 556
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL K+K + +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ VF
Sbjct: 557 ELDKLKEELDPSPKWSISRYKGLGEMNADQLWETTMNPEHRALLQVSLEDAIEADQVFEM 616
Query: 481 LMGARVDTRKELIQNAANLVNLD 503
LMG V+ R++ I++ A NLD
Sbjct: 617 LMGDVVENRRQFIEDNAVYANLD 639
>gi|403236812|ref|ZP_10915398.1| DNA gyrase subunit B [Bacillus sp. 10403023]
Length = 640
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 244/499 (48%), Positives = 338/499 (67%), Gaps = 11/499 (2%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
+ RG VT L V D GT F PD ++FT +++D +T+A R+RELAFL
Sbjct: 150 FERGHVVTELKV----VGETDHTGTTTHFKPDGEIFTETLEYDFDTLATRLRELAFLTRG 205
Query: 67 LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITIDLAL 125
+ I + + E+N+ EY + GG++ YV+ LN K+ +H+ F + +GI I++AL
Sbjct: 206 VKITI---EDKREENKRREYHYEGGIKSYVEHLNRTKEVIHEEPVFVEGEREGIAIEIAL 262
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
Q+ +D+Y+ + +AN+I T +GGTH G K +LTR +N +++ KD D +LSG+ V
Sbjct: 263 QY-NDSYTSNIYSFANNIHTYEGGTHESGFKTALTRIINDYARRNNIFKDNDANLSGDDV 321
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 245
REGLT IISV+ P+P+FEGQTKT+LGN E R V + E +L +P V I+ K
Sbjct: 322 REGLTAIISVKHPDPQFEGQTKTKLGNSEARTVTESVFSEKFEAFLLENPTVARKIVDKG 381
Query: 246 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 305
A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SE++IVEGDSAGGSAKQG
Sbjct: 382 TMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELYIVEGDSAGGSAKQG 441
Query: 306 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 365
RDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF RYHK++I
Sbjct: 442 RDRHFQAILPLRGKILNVEKARLDRILSNNEVRSMITALGTGI-GEDFDISKARYHKVVI 500
Query: 366 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 425
+TDADVDGAHIRTLLLTFFYR+ + + + G +Y+ PPLYK+++GK+++Y Y+D EL+K
Sbjct: 501 MTDADVDGAHIRTLLLTFFYRFMRQIIESGFVYIAQPPLYKIQQGKRIEYAYNDRELEKY 560
Query: 426 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 485
+ PSN IQR+KGLGEM P QLWETT++P R + Q+ ++DA +A+ F LMG +
Sbjct: 561 LAELPSNPKPGIQRYKGLGEMNPEQLWETTMDPSNRTMLQVTLQDAIDADETFEMLMGDK 620
Query: 486 VDTRKELI-QNAANLVNLD 503
V+ R+ I +NA + NLD
Sbjct: 621 VEPRRNFIEENAQYVKNLD 639
>gi|206900988|ref|YP_002251257.1| DNA gyrase, B subunit [Dictyoglomus thermophilum H-6-12]
gi|206740091|gb|ACI19149.1| DNA gyrase, B subunit [Dictyoglomus thermophilum H-6-12]
Length = 635
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 251/505 (49%), Positives = 355/505 (70%), Gaps = 18/505 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q Y RGKP+T LT D+ GT+I+F+PD ++F T +FD++ +A R+RELAF
Sbjct: 144 FYQVYERGKPITPLTVK----GETDKTGTKIKFYPDPEIFETT-KFDYDIVANRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LNPK+TI LR E + + N + + GGL E++++L+ K+ LH+ + ++ + ++
Sbjct: 199 LNPKVTIELRDERT----GRSNIFKYEGGLLEFIEYLSKGKEVLHEPIYMEREEGNLILE 254
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+ +Q+ S Y + +L Y N+I TI+GGTH+ G + +LTR +N+ + K+ + SLSG
Sbjct: 255 IVMQYNS-GYDELILSYVNNIHTIEGGTHVTGFRTALTRVVNNFARSWGLWKENE-SLSG 312
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+ VREGLT I+SV+VP+P+FEGQTKT+LGN EVRK V++ V+E LTEY +PD I+
Sbjct: 313 DDVREGLTAIVSVKVPDPQFEGQTKTKLGNTEVRKFVEKVVEEELTEYFSKNPDTGKLII 372
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
+K + A +A AA++AR+LVR+KS+L S+ LPGKLADCS P + E+FIVEG+SAGGSA
Sbjct: 373 TKIIEAYRARQAARKARELVRRKSLLESTLLPGKLADCSEKDPAKCELFIVEGESAGGSA 432
Query: 303 KQGRDRRFQAILPLRGKILNVERKDE-AAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
KQ RDRR+QAILPLRGKILNVE+ + +EEI+ +I +LG G+ G+DF LRYH
Sbjct: 433 KQARDRRYQAILPLRGKILNVEKAQHLTKILSSEEIKAIIASLGTGI-GQDFDLSKLRYH 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYR+ + L + G IY+ PPLY + +GK+ +Y Y + E
Sbjct: 492 KIIIMTDADVDGAHIRTLLLTFFYRHFRPLIEGGYIYIAQPPLYLLRKGKEERYAYSEEE 551
Query: 422 LKKVKS--SFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
+++ +P N IQR+KGLGEM P QL ETT++P++R+L Q+ IEDA EA +FS
Sbjct: 552 KEEILKEWGYPENVY--IQRYKGLGEMDPEQLRETTMDPQKRILLQVTIEDALEAERLFS 609
Query: 480 SLMGARVDTRKELIQNAANLV-NLD 503
LMG V+ R+ I+ A V NLD
Sbjct: 610 ILMGNNVEERRNFIEQKAKFVRNLD 634
>gi|403045150|ref|ZP_10900628.1| DNA gyrase subunit B [Staphylococcus sp. OJ82]
gi|402765214|gb|EJX19298.1| DNA gyrase subunit B [Staphylococcus sp. OJ82]
Length = 640
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 248/503 (49%), Positives = 335/503 (66%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDR-QGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
YHQ Y +G P L + D+ GT IRF D ++FT +++++T+ R RELA
Sbjct: 145 YHQAYKKGIPQFDLKV----IGETDKPTGTVIRFKADPEIFTETTEYNYDTLQQRTRELA 200
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
FLN ++I LR E E+ + + Y + GG++ YV+ LN K+PLHD + + D I
Sbjct: 201 FLNKGISITLRDERE--EEVREDSYHYEGGIKSYVEMLNETKEPLHDEPIYVHESKDDIE 258
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++ALQ+ + Y+ +L YAN+I T +GGTH EG K +L+R LNS G SK +K+ L
Sbjct: 259 VEIALQY-NKGYATNLLTYANNIHTYEGGTHEEGFKRALSRVLNSYGLNSKIIKEDKERL 317
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ E +L +P V
Sbjct: 318 SGEDTREGLTAVVSIKHSDPQFEGQTKTKLGNSEVRQVVDKLFAELFERFLYENPQVGRI 377
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
++ KS+ A A LAAK+AR++ R+KS L SSLPGKLADCSS P SEIFIVEGDSAGG
Sbjct: 378 VVEKSIMASHARLAAKKAREVTRRKSALEISSLPGKLADCSSKDPSRSEIFIVEGDSAGG 437
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
S K GRD QAILPLRGKILNVE+ + N EI+++I A G G+ GE F RY
Sbjct: 438 STKSGRDSETQAILPLRGKILNVEKARLDRILNNNEIRSMITAFGTGIGGE-FDLSKARY 496
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKI+++TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPL+K+ +GKQ Y +++
Sbjct: 497 HKIVLMTDADVDGAHIRTLLLTFFYRFMRPLLEAGYVYIAQPPLFKLTQGKQKYYVFNER 556
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL K+K + +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ VF
Sbjct: 557 ELDKLKEELDPSPKWSISRYKGLGEMNADQLWETTMNPEHRALLQVSLEDAIEADQVFEM 616
Query: 481 LMGARVDTRKELIQNAANLVNLD 503
LMG V+ R++ I++ A NLD
Sbjct: 617 LMGDVVENRRQFIEDNAVYANLD 639
>gi|340357105|ref|ZP_08679733.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Sporosarcina
newyorkensis 2681]
gi|339618783|gb|EGQ23374.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Sporosarcina
newyorkensis 2681]
Length = 640
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 341/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y ++SRG PV+ + + D GT IRF D ++FT ++++T+A R+RELA+
Sbjct: 145 YAIEFSRG-PVSK---ELEVIGESDETGTTIRFKADPEIFTETTVYEYSTLATRLRELAY 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L I + E + K++ + + GG++ YVQ LN +K+P+ + + + DGI+I
Sbjct: 201 LNRGLRITITDEREEEPKSEV--FHYEGGIKSYVQHLNENKEPIFEEPIYIEGERDGISI 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y++ +L +AN+I T +GGTH G K +LTR +N +K+ +K+ D +LS
Sbjct: 259 EIAMQYNS-GYAENLLSFANNIHTYEGGTHESGFKTALTRVINDYARKNGLLKEADGNLS 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN EV + + E L +L +P V +
Sbjct: 318 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEVSTITNSLFSEALQRFLIENPVVARKV 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KS A +A LAAK AR+L R+KS L SSLPGKL+DCSS P SE++IVEGDSAGGS
Sbjct: 378 VDKSTMAARARLAAKNARELTRRKSALEVSSLPGKLSDCSSRDPSISELYIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILPLRGKILNVE+ + N EI+ +I ALG G+ G +F + RYH
Sbjct: 438 AKNGRDRHFQAILPLRGKILNVEKARLDRILGNAEIRMIITALGTGI-GSEFDLQKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFF+R+ + L + G +Y+ PPLY+V GK QYCYD+
Sbjct: 497 KLVIMTDADVDGAHIRTLLLTFFFRFMRPLIEAGYVYIAQPPLYRVRAGKNEQYCYDEEA 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ S P++ I R+KGLGEM P QLWETT++P++R Q+ +EDA EA+ F L
Sbjct: 557 LQEILRSMPASPKPDITRYKGLGEMNPEQLWETTMDPDKRTFLQVRLEDAMEADATFEEL 616
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG V+ R++ I+ NA + N+D
Sbjct: 617 MGDEVEPRRKFIEDNAVYVQNID 639
>gi|91772465|ref|YP_565157.1| DNA gyrase subunit B [Methanococcoides burtonii DSM 6242]
gi|91711480|gb|ABE51407.1| DNA gyrase subunit B [Methanococcoides burtonii DSM 6242]
Length = 632
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 242/503 (48%), Positives = 334/503 (66%), Gaps = 13/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG P + +T + GT+ F PD Q+F T +F + T+ R+RELAF
Sbjct: 140 YYQRYERGAPTSDVTV----IGDAKGTGTKSTFMPDSQIFETT-EFSYGTLITRLRELAF 194
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN + I + DS E+ + + + + GG+ +V+ LN + LH + F ++ +G +
Sbjct: 195 LNKGIRITIT--DSREEELEQDVFEYEGGIISFVEHLNQSRTALHKTPIYFEREKEGTIV 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+Y + + +AN+I T +GGTH+ G K +LTR N KK+ VK D L+
Sbjct: 253 EIAMQY-TDSYGEYVYSFANNINTYEGGTHLIGFKTALTRVANDYIKKNNVVKG-DEKLT 310
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGL IISV++ P+FEGQTKT+LGN E++ +VD V E L+EY+E +P V I
Sbjct: 311 GEDIREGLAAIISVKLTEPQFEGQTKTKLGNSELKGIVDSMVSEGLSEYMEENPKVAVII 370
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
K+L A +A AAK+AR+L R+KS L +LPGKLADCS P SE+++VEGDSAGGS
Sbjct: 371 FQKALDARRAREAAKKARELTRRKSALEIGTLPGKLADCSEKDPSVSEVYLVEGDSAGGS 430
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+RRFQAILP RGKI+NVE+ + + KN E+ +LI A+G G+ ED+ E RYH
Sbjct: 431 AKQGRNRRFQAILPFRGKIINVEKARLSKVLKNNEVLSLITAMGTGI-AEDYNIEKARYH 489
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTL+LTFF+RY L D G +Y+ PPLY++++GK Y Y D E
Sbjct: 490 KVIIMTDADVDGAHIRTLILTFFFRYMAPLIDAGYVYIAQPPLYRIKKGKAEHYVYSDRE 549
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L N Y +QR+KGLGEM P QLWETT+NP+ R L Q+ ++DAA A+ +FS L
Sbjct: 550 LAAKLEEIGENNTY-VQRYKGLGEMNPEQLWETTMNPDTRTLLQVTMDDAAAADEMFSVL 608
Query: 482 MGARVDTRKELIQN-AANLVNLD 503
MG V RK IQ A +VNLD
Sbjct: 609 MGDEVAPRKAFIQKYAKEVVNLD 631
>gi|373456034|ref|ZP_09547845.1| DNA gyrase, B subunit [Dialister succinatiphilus YIT 11850]
gi|371934284|gb|EHO62082.1| DNA gyrase, B subunit [Dialister succinatiphilus YIT 11850]
Length = 649
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 254/505 (50%), Positives = 347/505 (68%), Gaps = 14/505 (2%)
Query: 3 YHQ-KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+H+ K SRG +T H+ D GT + F PD Q+F I FD+ T+ R+RELA
Sbjct: 154 FHEMKLSRGD----VTEHMRTYGETDETGTSVTFKPDIQIFKEGIDFDYETLKIRMRELA 209
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD--VVGFRKDVDGI 119
FLN LTI L ++ D +Q + + +AGG+ E+VQ+LN + K L D V+ F + D +
Sbjct: 210 FLNKGLTITL-TDNRDGATHQ-DVFHYAGGITEFVQFLN-EGKDLVDPAVIAFEGEKDKV 266
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+D+A+Q+ + YS+ M + N I T++GG H+ G + +LTR LN +KS +K + +
Sbjct: 267 IVDIAMQYQT-GYSENMYTFVNDINTVEGGMHLAGFRTALTRVLNDYARKSGILKQNEDN 325
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSG+ VREGLTC+ISV+VPNP+FEGQTKT+LGN EV+ +VD V E L YLE HP
Sbjct: 326 LSGDDVREGLTCVISVKVPNPQFEGQTKTKLGNLEVKSIVDNIVSEGLKTYLEEHPQEAR 385
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K ++A +A AA+RAR+L R+K+ L SSLPGKLADC+ P+ +EI+IVEGDSAG
Sbjct: 386 AIVEKGITASRAREAARRARELTRRKNALEVSSLPGKLADCTEKDPKFTEIYIVEGDSAG 445
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GRDRR+QAILPLRGKILNVE+ + ++ I+ +I A G GV GEDF LR
Sbjct: 446 GSAKSGRDRRYQAILPLRGKILNVEKARLDRVLNSDAIRTMITAFGTGV-GEDFDITKLR 504
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
Y+KIII+TDADVDGAHIRTLLLTFFYRY K L EG +Y+ PPLY++ +G+Q Y YDD
Sbjct: 505 YYKIIIMTDADVDGAHIRTLLLTFFYRYMKPLITEGHVYIAQPPLYQIRKGRQKYYTYDD 564
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
E K+ + +IQR+KGLGEM P QLW+TT+NPEQR++ ++ + DA EA+ +F+
Sbjct: 565 DEQNKMLDEIGRDGC-TIQRYKGLGEMDPEQLWDTTMNPEQRVMLKVELTDAIEADRLFT 623
Query: 480 SLMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R+ I ++A + NLD
Sbjct: 624 ILMGDKVEPRRRFIEEHAKEVTNLD 648
>gi|169335585|ref|ZP_02862778.1| hypothetical protein ANASTE_02000 [Anaerofustis stercorihominis DSM
17244]
gi|169258323|gb|EDS72289.1| DNA gyrase, B subunit [Anaerofustis stercorihominis DSM 17244]
Length = 636
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 247/503 (49%), Positives = 349/503 (69%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QKY RGKP+T L V R GT + F PD ++F+ + F+++T+ RIRELAF
Sbjct: 143 YEQKYERGKPITGLEV----VGKTKRTGTTVFFKPDGEIFSELV-FNYDTLKHRIRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I L+ D+ K+Q + + GG+ E+V + N K+ L +V+ F K+ D +
Sbjct: 198 LNKGLNITLK--DTREGKDQEESFHYEGGIIEFVDYANRGKEKLTPEVIYFEKESDVCML 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S +YS+++ +AN+I T++GG H+ G K +LTR++N+ +K +KD + +LS
Sbjct: 256 EVAMQF-STSYSESIYSFANNINTVEGGMHVNGFKTALTRSINAYARKYNILKDNEENLS 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGL +ISV++ +PEFEGQTKT+LGNPEVR VD +V + ++ YLE HP V I
Sbjct: 315 GDDIREGLCVVISVKLADPEFEGQTKTKLGNPEVRGYVDTTVGDNISSYLEEHPPVAKII 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L+A +A AA++A+DLVR+KSVL S++LPGKLADC P + EI+IVEGDSAGGS
Sbjct: 375 VEKALTAQRARKAARKAKDLVRRKSVLESTALPGKLADCREKDPSKCEIYIVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+ + QAILPLRGKILNVE+ + + I+++I A G G+ E+F E RYH
Sbjct: 435 AKLGRNSKTQAILPLRGKILNVEKARLDRILNTDTIRSMITAFGTGIS-EEFNIEKARYH 493
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYRY + L D G +Y+ PPLYK+E+ K+V Y Y D +
Sbjct: 494 KIVIMTDADVDGAHIRTLLLTFFYRYMRGLIDAGYVYIAQPPLYKLEKQKKVWYLYSDEQ 553
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ + + +QR+KGLGEM QLW+TT+NPE R L Q+ I+DAA A+ +FS L
Sbjct: 554 LEEKLQEIGRDKI-GLQRYKGLGEMNGEQLWDTTMNPENRTLLQVSIDDAAYADEIFSIL 612
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V RK+ I +NA + NLD
Sbjct: 613 MGDQVQPRKDFITENARKVQNLD 635
>gi|27262246|gb|AAN87404.1| DNA gyrase subunit B [Heliobacillus mobilis]
Length = 641
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 246/503 (48%), Positives = 350/503 (69%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG +T L V + + GT I F PD +F +++ + T++ R+REL+F
Sbjct: 150 HEQYYERGVTMTDLKV----VGNAESTGTTIYFKPDGLIFE-ELEYSYETLSHRLRELSF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I L+ D Q + + GG+ ++V++LN +K +H V+ F+ + +G+ +
Sbjct: 205 LNRGVKITLK----DLRTGQESIFAHEGGIIDFVKFLNRNKDLIHPHVIYFQNEKEGVHV 260
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D YS+T+ YAN+I T +GGTH G K +LTR +N G++ +K+ D +LS
Sbjct: 261 EMALQY-NDGYSETLFSYANNINTQEGGTHESGFKTALTRVINDYGRRINQIKENDSNLS 319
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REG+T +ISV+V P+FEGQTKT+LGN EVR + D V E L+ YLE +P V +
Sbjct: 320 GEDIREGITAVISVKVREPQFEGQTKTKLGNSEVRGITDSCVTEGLSTYLEENPSVGKKV 379
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+LSA++A AA++AR+L R+KS L S+SLPGKLADCS P E++IVEGDSAGGS
Sbjct: 380 IEKALSAMRAREAARKARELTRRKSALESTSLPGKLADCSFKDPSMCELYIVEGDSAGGS 439
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILNVE+ + NEEI+ LI ALG G+ GEDF RYH
Sbjct: 440 AKQGRDRRFQAILPLRGKILNVEKSRLDKILSNEEIRALITALGTGI-GEDFDLSKARYH 498
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
++ ++TDADVDG+HIRTLLLTFF+R+ K L + G +Y+ PPLY+V++G+ V+Y Y D E
Sbjct: 499 RVCLMTDADVDGSHIRTLLLTFFFRHMKPLIENGYVYIAQPPLYQVKKGRDVRYYYHDNE 558
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + + + +IQR+KGLGEM P QLW+TT++PE R + Q+ +EDAAEA +F++L
Sbjct: 559 LNQYLDKNGRDGV-TIQRYKGLGEMNPEQLWDTTMDPEHRTILQVSMEDAAEAESIFTTL 617
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG RV+ R+E IQ +A ++ NLD
Sbjct: 618 MGDRVEPRREFIQSHAKDVRNLD 640
>gi|145577995|gb|ABP82716.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar oswaldocruzi]
Length = 631
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 247/505 (48%), Positives = 344/505 (68%), Gaps = 16/505 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 139 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 194
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 195 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 250 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 309 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVE DSAG
Sbjct: 369 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVE-DSAG 427
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 428 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 486
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 487 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNE 546
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 547 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 606
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 607 ILMGDKVEPRRNFIQENAKYVKNLD 631
>gi|187777362|ref|ZP_02993835.1| hypothetical protein CLOSPO_00918 [Clostridium sporogenes ATCC
15579]
gi|187774290|gb|EDU38092.1| DNA gyrase, B subunit [Clostridium sporogenes ATCC 15579]
Length = 637
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 251/502 (50%), Positives = 352/502 (70%), Gaps = 14/502 (2%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
QKY RG P T L V + GT+I F PD ++F ++F+++T+A R+RELAFLN
Sbjct: 146 QKYERGIPKTGLDI----VGDTEDHGTKIYFKPDVEIFD-ELEFEYDTLAQRLRELAFLN 200
Query: 65 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITIDL 123
+ I+L E D ++ + + GGL +V +LN +K+ LH + K+ DG +++
Sbjct: 201 KGIKISLTDERYDKQEM----FHYEGGLRSFVLYLNRNKEKLHQQPIYVDKNKDGCIVEI 256
Query: 124 ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGE 183
A+Q+ +D Y++ + +AN+I TI+GGTH+ G K++LTR +N +K +KD D +LSG+
Sbjct: 257 AMQY-NDGYAENIFSFANNIDTIEGGTHLAGFKSALTRAINDYARKFNYLKDTDKNLSGD 315
Query: 184 HVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILS 243
VREGLT +ISV++ +P+FEGQTKT+LGN EVR +VD V E + +LE +P+V I+
Sbjct: 316 DVREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDTIVGESIGSFLEENPNVGKIIIE 375
Query: 244 KSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAK 303
K LSA +A AAKRAR+L R+KSVL S+SLPGKLADCSS P EI++VEGDSAGGSAK
Sbjct: 376 KGLSASRAREAAKRARELTRRKSVLESTSLPGKLADCSSKDPSLCEIYLVEGDSAGGSAK 435
Query: 304 QGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKI 363
QGR+R FQAILPL+GKI+NVE++ + ++EI+ +I A G G+ G++F E +RY++I
Sbjct: 436 QGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITAFGAGI-GKEFNLEKIRYNRI 494
Query: 364 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELK 423
II+TDADVDGAHIRTLLLTFFYRY K L +EG +Y+ PPLY++ + K+ Y Y D EL
Sbjct: 495 IIMTDADVDGAHIRTLLLTFFYRYMKELVEEGHVYIAQPPLYRIYKAKKELYVYSDKELD 554
Query: 424 KVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
+ + +IQR+KGLGEM P QLWETT+NPE R L Q+ IEDA A+ +F+ LM
Sbjct: 555 EALLELGGKDTNTNIQRYKGLGEMDPEQLWETTMNPEHRTLLQVTIEDAMAADEIFTILM 614
Query: 483 GARVDTRKELIQNAAN-LVNLD 503
G +V+ R++ I+N A+ +VNLD
Sbjct: 615 GTKVEPRRDFIENNADKVVNLD 636
>gi|365173766|ref|ZP_09361472.1| DNA gyrase, B subunit [Synergistes sp. 3_1_syn1]
gi|363616789|gb|EHL68216.1| DNA gyrase, B subunit [Synergistes sp. 3_1_syn1]
Length = 647
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 239/506 (47%), Positives = 347/506 (68%), Gaps = 16/506 (3%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EYHQ+Y RG P+T L V + +GTR++F PD+++F+T +F + + R+RELA
Sbjct: 153 EYHQRYERGIPMTGLEA----VGDTELRGTRVQFMPDEEIFSTT-EFQADILKQRLRELA 207
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD---VVGFRKDVDG 118
FLN +TI ED PEK + Y + GG+ +V++LN K+ L ++ KD
Sbjct: 208 FLNSHITINF--EDLRPEKPEKKSYNYPGGISSFVEYLNKGKEVLFKGPMIISGEKD--Q 263
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+D+A+Q+ +D Y + + G+ N I TI+GGTH+ G ++++TR +N +K K +K+KD
Sbjct: 264 TQVDVAIQY-NDTYLERLYGFVNLINTIEGGTHVAGFRSAMTRAINDEARKLKILKEKDN 322
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSG+ ++EGLT +ISV+V P+FEGQTKT+LGN +V+ +VD V E L L+ P++L
Sbjct: 323 NLSGDDLKEGLTAVISVKVMEPQFEGQTKTKLGNNDVKGIVDSIVYEGLKNALDERPEIL 382
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ +L A +A AAK+A++LVR+KS++ +LPGKL+DCS+ P + EI+IVEGDSA
Sbjct: 383 KPIVESALRARQAREAAKKAKELVRRKSIMSGLTLPGKLSDCSNRNPADCEIYIVEGDSA 442
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGR+R FQAILPLRGKILNVE+ + +E I+N+I ALG GV G+DF E L
Sbjct: 443 GGSAKQGRNREFQAILPLRGKILNVEKARLEKILSSETIRNIILALGCGV-GDDFNDEKL 501
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHKI I+ DADVDGAHIRTLLLT F+RY + ++G +YV PPL++V+ GK V YC+
Sbjct: 502 RYHKIFIMADADVDGAHIRTLLLTLFFRYMPQIIEKGYLYVAQPPLFRVQCGKDVTYCFS 561
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+ E+K+ ++ + +QR+KGLGEM QLWETT+NPE R++ ++ ++DA EA+ +F
Sbjct: 562 EKEMKEAQNKANGKKV-DVQRYKGLGEMNAEQLWETTMNPENRIINRVEVQDAVEADELF 620
Query: 479 SSLMGARVDTRKELIQNAANLV-NLD 503
LMG V+ R++ I+ V NLD
Sbjct: 621 GILMGDVVEPRRKFIEQFGKEVKNLD 646
>gi|383786730|ref|YP_005471299.1| DNA gyrase subunit B [Fervidobacterium pennivorans DSM 9078]
gi|383109577|gb|AFG35180.1| DNA gyrase, B subunit [Fervidobacterium pennivorans DSM 9078]
Length = 641
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 245/507 (48%), Positives = 345/507 (68%), Gaps = 16/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y+RG+ VT + + ++GT +RF PDK +FTT ++FD +TI R+R+LAF
Sbjct: 149 YRQRYARGQKVTEVEV----IGETTKRGTIVRFKPDKTIFTT-VEFDSDTILTRLRDLAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LNP +TI E D N + ++GGL+E+V +LN +K LH+VV V + +
Sbjct: 204 LNPNVTI----EFIDERNNIHRTLHYSGGLKEFVSYLNRGEKTLHEVVYIEGSVQDVQVQ 259
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+A Q+ +D+ ++ ++ + N+I+T+DGGTH+ G K + TR +N LGKK +K + G
Sbjct: 260 VAFQY-TDSDTEEIISFVNNIKTVDGGTHVTGFKTAFTRVVNELGKKKNMIKGE--PFRG 316
Query: 183 EHVREGLTCIISV-RVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
E +REG+T +I+V + P+FEGQTK++LGN EV+ V + V++ LT+Y E++ VL I
Sbjct: 317 EDLREGMTAVIAVLMMGTPQFEGQTKSKLGNEEVQDAVAKVVRDKLTDYFEVNESVLKVI 376
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+ +A AAKRAR+ V++KS L +S+LPGKLADC + EESE+FIVEGDSAGGS
Sbjct: 377 IQKAQQTREAREAAKRAREAVKRKSSLGASTLPGKLADCITKNLEESELFIVEGDSAGGS 436
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQ RDR FQAILPLRGKILNVE+ +E + KNE+I+++I A+G G G++F + LRY
Sbjct: 437 AKQARDRNFQAILPLRGKILNVEKSNELKLLKNEQIRDIITAIGTGT-GDNFDESKLRYG 495
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE-RGKQVQYCYDDA 420
KIII+TDADVDGAHIRTLLL FYRY + L + G IYV +PPLYK+ G++ Y Y D
Sbjct: 496 KIIIMTDADVDGAHIRTLLLALFYRYMRPLLENGRIYVAMPPLYKLTVSGEKPVYLYSDE 555
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
ELK +S + Y IQR+KGLGEM P QLWETT+NP+ R + ++ IEDA EA+ +F
Sbjct: 556 ELKAKLASI-NGKRYEIQRYKGLGEMNPEQLWETTMNPKTRKIIRITIEDAEEADNLFEI 614
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMG + R+ I A ++L LD+
Sbjct: 615 LMGKDAEERRGYIMRHARQLSLVDLDV 641
>gi|73661314|ref|YP_300095.1| DNA gyrase subunit B [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72493829|dbj|BAE17150.1| DNA gyrase subunit B [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 641
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/502 (48%), Positives = 332/502 (66%), Gaps = 7/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P V+ D GT IRF D ++FT + + T+ R RELAF
Sbjct: 145 YHQGYKKGVP--QFDLKVIEETDDDNTGTVIRFKADSEIFTETTTYHYETLQQRTRELAF 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN ++I LR D E+ + + Y + GG++ YV+ LN +K+PLH+ + + D I +
Sbjct: 203 LNKGISITLR--DERGEEVREDTYHYEGGIKSYVEMLNENKQPLHEEPIYVHQTKDDIEV 260
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ + ++ +L YAN+I T +GGTH EG K +L+R LNS G SK +K+ LS
Sbjct: 261 EIALQY-NKGFATNLLTYANNIHTYEGGTHEEGFKRALSRVLNSYGLNSKIIKEDKERLS 319
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT I+S++ +P+FEGQTKT+LGN EVR++VD+ E +L HP V +
Sbjct: 320 GEDTREGLTAIVSIKHGDPQFEGQTKTKLGNSEVRQIVDKLFSELFERFLYEHPQVGRIV 379
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A A LAAK+AR++ R+KS L SSLPGKLADCSS P SEIFIVEGDSAGGS
Sbjct: 380 VEKGIMASHARLAAKKAREVTRRKSALEISSLPGKLADCSSKDPSRSEIFIVEGDSAGGS 439
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD QAILPLRGKILNVE+ + N EI+++I A G G+ GE F RYH
Sbjct: 440 TKSGRDSETQAILPLRGKILNVEKARLDRILNNNEIRSMITAFGTGIGGE-FDLSKARYH 498
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+++TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPL+K+ +GKQ Y +++ E
Sbjct: 499 KIVLMTDADVDGAHIRTLLLTFFYRFMRPLLEAGYVYIAQPPLFKLTQGKQKYYVFNERE 558
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+K+K+ +SI R+KGLGEM QLWETT+NPE R + Q+ ++DA EA+ VF L
Sbjct: 559 LEKLKAELEPTPKWSISRYKGLGEMNADQLWETTMNPENRAMLQVSLDDAIEADQVFEML 618
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 619 MGDVVENRRQFIEDNAVYANLD 640
>gi|260891935|ref|YP_003238032.1| DNA gyrase subunit B [Ammonifex degensii KC4]
gi|260864076|gb|ACX51182.1| DNA gyrase, B subunit [Ammonifex degensii KC4]
Length = 636
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 251/505 (49%), Positives = 355/505 (70%), Gaps = 19/505 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG+PVT L + DR GT + F PD Q+F + F + + R+REL+F
Sbjct: 146 WRQRFERGRPVTDLEA----IGETDRTGTTVHFKPDHQIFEEVV-FSQDYLTQRLRELSF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFF--AGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGI 119
L P++ I LR E + E+ F GGL ++V+ LN ++ LH D + + +G+
Sbjct: 201 LVPEVRIVLRDERTG------EEFVFHHKGGLRDFVRHLNRAREVLHPDPIYLAGEREGM 254
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++ ALQ+ D Y++++ YAN+IRT+DGGTH G KA+LTR +N G++ + + +
Sbjct: 255 VVEAALQY-HDGYAESIFSYANTIRTVDGGTHEAGFKAALTRVVNDYGRRHGIIPE-NFQ 312
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT +++V+VP+P+FEGQTKT+LGN +VR+VV+ V E L + E +P +
Sbjct: 313 LAGEDVREGLTAVVAVKVPDPQFEGQTKTKLGNTQVRRVVESIVGEGLASFFEENPSIAR 372
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K+L+A +A AA+RAR+L R+K +L S+SLPGKLADCS P ++E++IVEGDSAG
Sbjct: 373 LIVEKALAAARAREAARRARELARRKGLLESTSLPGKLADCSERDPAKTELYIVEGDSAG 432
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDRRFQAILPLRGKILNVE+ + NEEI+ LI A+G G+ GED + +R
Sbjct: 433 GSAKQGRDRRFQAILPLRGKILNVEKARLDKILANEEIKALITAIGAGI-GEDLDLKKVR 491
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFF+RY + L + G +Y+ PPLY+V +GK+ Y Y+D
Sbjct: 492 YHKLIIMTDADVDGAHIRTLLLTFFFRYMRPLIEAGYVYIAQPPLYRVRKGKESFYAYND 551
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
AEL+K+ S+ N + +IQR+KGLGEM QLWETT+NPE+R++ Q+ +EDA A+ +FS
Sbjct: 552 AELEKLLSTLGRNGV-TIQRYKGLGEMNAEQLWETTMNPEKRVILQVTLEDAVAADELFS 610
Query: 480 SLMGARVDTRKELIQNAANLV-NLD 503
+LMG +V+ R+E I A V NLD
Sbjct: 611 TLMGDKVEPRREFISRYARYVRNLD 635
>gi|403389401|ref|ZP_10931458.1| DNA gyrase subunit B [Clostridium sp. JC122]
Length = 635
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/507 (48%), Positives = 356/507 (70%), Gaps = 20/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ + +SRGK ++ D GTRI F D ++F + +D++T++ R+REL+F
Sbjct: 142 WKETFSRGKVLSPFEV----AGDTDDHGTRIYFKADPEIFDD-VTYDYDTLSQRLRELSF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I L +D + + E+ + GG++ +V++LN +K +H+ + G + D
Sbjct: 197 LNKGIRITL----TDEREGKSQEFHYEGGIKSFVEYLNRNKGKIHNEPIYIEGIKDDC-- 250
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
T+++ALQ+ +D+Y++ + +AN+I TI+GGTH+ G KA+LTR +N KK +K+ D
Sbjct: 251 -TVEIALQY-NDSYNENLFSFANNIDTIEGGTHLVGFKAALTRVINDYAKKFGHLKENDK 308
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSGE VREGLT ++SV++ +P+FEGQTKT+LGN +VR +V+ + +T +LE +P V
Sbjct: 309 NLSGEDVREGLTAVVSVKITDPQFEGQTKTKLGNSQVRGIVESIANDSITSFLEENPQVG 368
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
SI+ K L+A +A AAK+AR+L R+KSVL S+SLPGKLADCSS PEE EI+IVEGDSA
Sbjct: 369 KSIIDKGLNAARAREAAKKARELTRRKSVLESTSLPGKLADCSSKNPEECEIYIVEGDSA 428
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGR+R+FQAILPLRGKI+NVE++ M ++ I+++I A G G+ G+DF +
Sbjct: 429 GGSAKQGRNRKFQAILPLRGKIMNVEKQRLDKMLNSDTIKSMITAFGGGI-GKDFDVSKI 487
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHKIII+TDADVDGAHIRTLLLTFFYRY + L DEG +Y+ PPLY++++GK Y Y
Sbjct: 488 RYHKIIIMTDADVDGAHIRTLLLTFFYRYMRELVDEGHVYIAQPPLYRLKKGKNEYYTYS 547
Query: 419 DAELKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
D EL+ ++ ++ IQR+KGLGEM QLW+TT+NPE R L ++ +EDA A+ +
Sbjct: 548 DKELENLIQEVGGKDSSVDIQRYKGLGEMNAEQLWDTTMNPENRTLLKVDVEDAMAADEI 607
Query: 478 FSSLMGARVDTRKELI-QNAANLVNLD 503
F+ LMG +V+ R+E I +NA ++NLD
Sbjct: 608 FTILMGDKVEPRREFIEENAKKVINLD 634
>gi|452974104|gb|EME73926.1| DNA gyrase subunit B [Bacillus sonorensis L12]
Length = 637
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/503 (48%), Positives = 344/503 (68%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG P L + D GT F PD ++FT ++D++T+A R+RELAF
Sbjct: 142 HYQEYERGVPKADLKV----IGDTDVTGTTTHFKPDPEIFTETTEYDYDTLATRVRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED K + NEY + GG++ YV+ LN ++ +H+ V DGIT+
Sbjct: 198 LTKGVKITI--EDKREGKERKNEYCYEGGIKSYVEHLNRSREVIHEEPVYIEGSKDGITV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + +AN+I T +GGTH G K LTR +N +++ K+ D +LS
Sbjct: 256 EVALQY-NDSYTSNIYSFANNIHTYEGGTHEAGFKTGLTRVINDYARRNGVFKENDPNLS 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IIS++ P+P+FEGQTKT+LGN E R + D E L ++L +PD I
Sbjct: 315 GEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARAITDALFSEALEKFLLENPDSAKKI 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 375 VEKGVMAARARMAAKKARELTRRKSALEVSNLPGKLADCSSKDPTISELYIVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 435 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 493
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + ++G +Y+ PPLYK+++GK+V+Y Y+D +
Sbjct: 494 KVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEQGYVYIAQPPLYKIQQGKRVEYAYNDKQ 553
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ P N +QR+KGLGEM QLWETT++P+ R L Q+ ++DA +A+ F L
Sbjct: 554 LEEILKELPQNPKPGLQRYKGLGEMNATQLWETTMDPDTRTLLQVTLKDAIDADETFEML 613
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V+ R+ I +NA + NLD
Sbjct: 614 MGDKVEPRRNFIEENARYVKNLD 636
>gi|375092559|ref|ZP_09738837.1| DNA gyrase, B subunit [Helcococcus kunzii ATCC 51366]
gi|374560728|gb|EHR32085.1| DNA gyrase, B subunit [Helcococcus kunzii ATCC 51366]
Length = 637
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 245/506 (48%), Positives = 348/506 (68%), Gaps = 16/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++S+GKP T L H + D GT IRFWPD +VF T + F+ T+ R E+ F
Sbjct: 142 YTQEFSQGKPKTKLQKH----EETDETGTSIRFWPDGEVFET-LDFNRATLEKRFEEMTF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
LN L I L DP ++ E F A GGL +V++LN + LHD V+ ++ VDG
Sbjct: 197 LNEGLKITLIDYREDP---KFEEDFIAEGGLSTFVKFLNKKRTALHDDVIHYKGMVDGSE 253
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+D A+Q+ +D+YS+ +L +AN++ T +GGTH+ G ++ LT+T+N+ ++ +K+KD +
Sbjct: 254 VDFAMQY-TDSYSENVLSFANTVLTGEGGTHLTGFRSGLTKTINNYAREYDFLKEKDENY 312
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGE +REG+T II+V++ NP+FEGQTK +LG+ E+R +VD V E L+EYLE +P +
Sbjct: 313 SGEDIREGITAIIAVKLSNPQFEGQTKGKLGSSEMRGIVDTFVSEKLSEYLEENPKIAKK 372
Query: 241 ILSKSLSALKAALAAKRARDLVRQK-SVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K SA +A +A+K+ARDL R K S+L S++LPGKLA+C ST E+E+FIVEGDSAG
Sbjct: 373 IMDKCESARRARVASKKARDLSRNKNSLLSSTTLPGKLAECQSTDITENELFIVEGDSAG 432
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GRD ++QAILP+RGKILNVE+ A + +EEI+ LI A G G+ GEDF + LR
Sbjct: 433 GSAKLGRDNKYQAILPIRGKILNVEKARIAKVLSSEEIKALITAFGTGI-GEDFDIKNLR 491
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
Y KII++TDADVDGAHI TLLLTF YRY + L + G +++ PPL+KV +GK+ +Y YD+
Sbjct: 492 YGKIILMTDADVDGAHIDTLLLTFLYRYMRPLIENGNVFIAQPPLFKVTQGKKERYVYDE 551
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA-EANVVF 478
ELK + + Y I R+KGLGEM QLWETT++PE R+L Q+ I++ + + F
Sbjct: 552 KELKSIIENIKGEN-YKINRYKGLGEMNAEQLWETTMHPEHRVLIQVKIDNESITLDDTF 610
Query: 479 SSLMGARVDTRKELI-QNAANLVNLD 503
++LMG +V+ R+E I +NA N+D
Sbjct: 611 NTLMGDKVEPRREFIEENAKFATNID 636
>gi|312134087|ref|YP_004001425.1| DNA gyrase subunit B [Caldicellulosiruptor owensensis OL]
gi|311774138|gb|ADQ03625.1| DNA gyrase, B subunit [Caldicellulosiruptor owensensis OL]
Length = 637
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/507 (48%), Positives = 348/507 (68%), Gaps = 22/507 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG+P TC + + + D+ GT++ F PD ++F T I+FD + I R+RELAF
Sbjct: 146 YYQRYERGRP----TCELKVIGTTDKTGTKVTFLPDDEIFET-IEFDGDVILQRLRELAF 200
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDG 118
LN + I R+++ P + +Y+ GG+ E+V++LN +K+ LH + + + +
Sbjct: 201 LNKGIRIVFLDEREKNPKPVELKYD-----GGIAEFVKFLNRNKEVLHQEPIYIEGEKND 255
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I I++A+Q+ D + + + +AN+I TIDGGTH+ G K ++T+ +N KK K D
Sbjct: 256 ILIEVAMQYTDD-FGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEYAKKYNLTKG-DT 313
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
L GE +R+G+T I+SV++ P+FEGQTKT+LGN E R V+ V E L +LE +PDV
Sbjct: 314 QLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSEKLAAFLEENPDVS 373
Query: 239 DSILSKSLSALKAALAAKRARDLV-RQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K++ A KA AK+AR+LV ++KS L SS+LPGKLADCS P + EIFIVEGDS
Sbjct: 374 KKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDPAKCEIFIVEGDS 433
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRR+QAILPL GK+LNVE+ + +Y N+++ LI+ALG+G+ G D +
Sbjct: 434 AGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALGVGI-GNDIDLKK 492
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHK+II+ DADVDG+HIRTLLLTFFYRY + L + G IY+ PPLYK+ +GKQV+Y Y
Sbjct: 493 LRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLYKITKGKQVRYAY 552
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ EL+K+ +QRFKGLGEM +LWETT++P +R+L ++ IEDA A +
Sbjct: 553 NEKELQKILQEMKDA---QVQRFKGLGEMNAQELWETTMDPARRILLRVEIEDAVMAEEI 609
Query: 478 FSSLMGARVDTRKELIQ-NAANLVNLD 503
F+ LMG RV+ R+E I+ NA + NLD
Sbjct: 610 FTILMGDRVEPRREFIEKNAKYVRNLD 636
>gi|83588881|ref|YP_428890.1| DNA gyrase subunit B [Moorella thermoacetica ATCC 39073]
gi|83571795|gb|ABC18347.1| DNA gyrase, B subunit [Moorella thermoacetica ATCC 39073]
Length = 634
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 252/507 (49%), Positives = 342/507 (67%), Gaps = 22/507 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ+Y RG+ V+ L + GT + F+PD ++F + F I R++EL+F
Sbjct: 143 YHQEYRRGQKVSELKV----IGKTKGTGTSVTFYPDGEIFEDLV-FQDEIIGRRLQELSF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK-----KPLHDVVGFRKDVD 117
LN + I R E ++ E Y+ GGL ++V+ LN +K KPL+ F + D
Sbjct: 198 LNRGVKIVFRDERNESETT----YYHTGGLIDFVRHLNKNKTVLFNKPLY----FSGEKD 249
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
+ ++A+Q+ +D Y++ +L YAN+I T++GG+H G K +LTR +N ++ +KD +
Sbjct: 250 DVQAEIAIQY-NDGYNELILSYANNIHTVEGGSHEIGFKTALTRVINDYARRFNLLKDAE 308
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+LSGE +REGLT +ISV+V P+FEGQTKT+LGN EVR +VD V E L+ YLE +P +
Sbjct: 309 ANLSGEDIREGLTAVISVKVLEPQFEGQTKTKLGNTEVRGIVDSLVAENLSAYLEENPTI 368
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K+L+A +A AA++AR+L R+K+ L +SLPGKLADC+ P +E+F+VEGDS
Sbjct: 369 GRRIVDKALNAFRAREAARKARELTRRKNALEITSLPGKLADCTHKDPAMAELFLVEGDS 428
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILPLRGKILNVE+ + NEEI+ +I ALG G+ G+DF
Sbjct: 429 AGGSAKQGRDRRFQAILPLRGKILNVEKARLDKILNNEEIRTIITALGTGI-GDDFNINK 487
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
RYHK I++ DADVDG+HIRTLLLTFFYRY + L EG IY+ PPLYKV RGK +Y Y
Sbjct: 488 ARYHKTILMADADVDGSHIRTLLLTFFYRYMRPLITEGYIYIAQPPLYKVYRGKVERYLY 547
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+DAEL+K + IQR+KGLGEM P QLWETT+NPE R L Q+ +EDA EA+ +
Sbjct: 548 NDAELEKFLKEHEGER-WEIQRYKGLGEMNPEQLWETTMNPESRTLLQVNLEDAMEADAI 606
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
F+ LMG RV+ R+E IQ A+ V NLD
Sbjct: 607 FNILMGDRVEPRREFIQQHAHEVRNLD 633
>gi|255527581|ref|ZP_05394445.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7]
gi|296186779|ref|ZP_06855180.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7]
gi|255508714|gb|EET85090.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7]
gi|296048493|gb|EFG87926.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7]
Length = 637
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 247/507 (48%), Positives = 356/507 (70%), Gaps = 20/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q + RGK T L V + GT+I F PD ++F + +D++T+A R+RELAF
Sbjct: 144 WKQAFERGKVKTGLEI----VGDSEGHGTKIHFKPDAEIFE-EVDYDYDTLAQRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I L SD ++ + + GG++ +V +LN +K+ ++ V G ++D
Sbjct: 199 LNRNIRINL----SDERIDKLEVFHYEGGIKSFVSYLNRNKQVINKEPIYVEGNKQDC-- 252
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
++++++Q+ +D Y++ + +AN+I T++GGTH+ G K++LTR N KK +K+ D
Sbjct: 253 -SVEISIQY-NDGYTENIFSFANNIDTVEGGTHLAGFKSALTRAFNDYAKKFGILKENDK 310
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSGE +REGLT +ISV++ +P+FEGQTKT+LGN EVR +VD V E ++ +L+ +P V
Sbjct: 311 NLSGEDIREGLTAVISVKLIDPQFEGQTKTKLGNSEVRGIVDGIVGEGVSSFLQENPQVA 370
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
SIL KSL A +A AA++AR+L R+KS+L ++SLPGKLADCSS P+E EI++VEGDSA
Sbjct: 371 KSILDKSLMASRAREAARKARELTRRKSILENTSLPGKLADCSSKDPKECEIYLVEGDSA 430
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGR+RRFQAILPLRGKI+NVE++ + EEI+ +I A G G+ G+DF E +
Sbjct: 431 GGSAKQGRNRRFQAILPLRGKIMNVEKQRLDKILGYEEIRAMITAFGGGI-GKDFDVEKI 489
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RY +III+TDADVDGAHIRTLLLTFFYRY K L D+G +Y+ PPLYKV +GK+ Y Y
Sbjct: 490 RYDRIIIMTDADVDGAHIRTLLLTFFYRYMKELVDQGHVYIAQPPLYKVAKGKKEHYAYS 549
Query: 419 DAELKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
D EL+K+ + +IQR+KGLGEM QLW+TT+NP++R+L Q+ +EDA A+ +
Sbjct: 550 DKELEKLLEDVGGKDNNTNIQRYKGLGEMDATQLWDTTMNPDERVLLQVTVEDAMAADEI 609
Query: 478 FSSLMGARVDTRKELIQ-NAANLVNLD 503
F+ LMG +V+ R+E IQ NA ++NLD
Sbjct: 610 FTILMGDKVEPRREFIQENAKKVINLD 636
>gi|418574795|ref|ZP_13138957.1| DNA gyrase subunit B [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|379326701|gb|EHY93817.1| DNA gyrase subunit B [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 644
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/502 (48%), Positives = 332/502 (66%), Gaps = 7/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P V+ D GT IRF D ++FT + + T+ R RELAF
Sbjct: 148 YHQGYKKGVP--QFDLKVIEETDDDNTGTVIRFKADPEIFTETTTYHYETLQQRTRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN ++I LR D E+ + + Y + GG++ YV+ LN +K+PLH+ + + D I +
Sbjct: 206 LNKGISITLR--DERGEEVREDTYHYEGGIKSYVEMLNENKEPLHEEPIYVHQTKDEIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ + ++ +L YAN+I T +GGTH EG K +L+R LNS G SK +K+ LS
Sbjct: 264 EIALQY-NKGFATNLLTYANNIHTYEGGTHEEGFKRALSRVLNSYGLNSKIIKEDKERLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT I+S++ +P+FEGQTKT+LGN EVR++VD+ E +L HP V +
Sbjct: 323 GEDTREGLTAIVSIKHGDPQFEGQTKTKLGNSEVRQIVDKLFSELFERFLYEHPQVGRIV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A A LAAK+AR++ R+KS L SSLPGKLADCSS P SEIFIVEGDSAGGS
Sbjct: 383 VEKGIMASHARLAAKKAREVTRRKSALEISSLPGKLADCSSKDPSRSEIFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD QAILPLRGKILNVE+ + N EI+++I A G G+ GE F RYH
Sbjct: 443 TKSGRDSETQAILPLRGKILNVEKARLDRILNNNEIRSMITAFGTGIGGE-FDLSKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+++TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPL+K+ +GKQ Y +++ E
Sbjct: 502 KIVLMTDADVDGAHIRTLLLTFFYRFMRPLLEAGYVYIAQPPLFKLTQGKQKYYVFNERE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+K+K+ +SI R+KGLGEM QLWETT+NPE R + Q+ ++DA EA+ VF L
Sbjct: 562 LEKLKAELEPTPKWSISRYKGLGEMNADQLWETTMNPENRAMLQVSLDDAIEADQVFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|414082107|ref|YP_006990804.1| DNA gyrase subunit B [Carnobacterium maltaromaticum LMA28]
gi|412995680|emb|CCO09489.1| DNA gyrase, B subunit [Carnobacterium maltaromaticum LMA28]
Length = 645
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 334/503 (66%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QK+ +GK L + DRQGT + F PD ++FT F+ ++ R+RELAF
Sbjct: 150 HYQKFHQGKVGEDLKI----IGDTDRQGTTVHFVPDPEIFTETTVFEFEKLSTRVRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L I++ ED + E+ + GG++ YV+ LN +K L D + + GI +
Sbjct: 206 LNKGLKISI--EDKREGQETLKEFHYEGGIKSYVEHLNHNKTVLFEDPIYIEGEQQGIVV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+ A+Q+ +D Y +L +AN+I T +GGTH G K +LTR +N +KSK +K+ + +L+
Sbjct: 264 EAAMQY-TDGYHTNLLSFANNIHTYEGGTHESGFKTALTRVINDYARKSKLMKENEENLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +IS++ P+P+FEGQTKT+LGN E R + D+ + ++L +P V +
Sbjct: 323 GEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEARTITDRLFSAHFDKFLMENPQVARRV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA LAAKRAR++ R+KS L S+LPGKLADCSS P SEIFIVEGDSAGGS
Sbjct: 383 IEKGILASKARLAAKRAREVTRKKSGLEISNLPGKLADCSSKDPSISEIFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RYH
Sbjct: 443 AKQGRSRLFQAILPIRGKILNVEKATLDKILANEEIRSLFTAMGTGFGG-DFDVSKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PPLY+V +GK++ Y DAE
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPLYQVRQGKKMVYLDSDAE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ + P+ IQR+KGLGEM QLW TT++PE+R + Q+ ++DA EA+ VF L
Sbjct: 562 LEAYLNEIPAQPKPVIQRYKGLGEMDAEQLWSTTMDPERRRMLQVTVDDAIEADQVFEML 621
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG RV+ R++ I +NA + NLD
Sbjct: 622 MGDRVEPRRKFIEENAVYVQNLD 644
>gi|358051218|ref|ZP_09145436.1| DNA gyrase subunit B [Staphylococcus simiae CCM 7213]
gi|357259294|gb|EHJ09133.1| DNA gyrase subunit B [Staphylococcus simiae CCM 7213]
Length = 644
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 245/502 (48%), Positives = 334/502 (66%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D GT IRF D +FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDVTGTTIRFKADGSIFTETQVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L K++ D E + + Y + GG++ YV+ LN +K+PL+D + + D + +
Sbjct: 205 LNKGIEITL-KDERDKENIREDSYHYEGGIKSYVELLNENKEPLYDEPIYIHQSKDDVEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LN+ G SK +K+ L+
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNNYGLNSKIMKEDKERLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T I+S++ +P+FEGQTKT+LGN EVR++VD+ E+ +L +P V I
Sbjct: 323 GEDTREGMTAIVSIKHSDPQFEGQTKTKLGNSEVRQIVDKLFSEHFERFLYENPQVARVI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A A +AAK+AR++ R+KS L +SLPGKLADCSS PEE EIF+VEGDSAGGS
Sbjct: 383 VDKGIMASHARVAAKKAREVTRRKSALDVASLPGKLADCSSKVPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLSKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K+ +SI R+KGLGEM QLW+TT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKAELNPTPKWSIARYKGLGEMNADQLWDTTMNPEHRSLLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>gi|339626334|ref|YP_004717977.1| DNA topoisomerase IV subunit B [Sulfobacillus acidophilus TPY]
gi|379005805|ref|YP_005255256.1| DNA gyrase subunit B [Sulfobacillus acidophilus DSM 10332]
gi|339284123|gb|AEJ38234.1| DNA topoisomerase IV, B subunit [Sulfobacillus acidophilus TPY]
gi|361052067|gb|AEW03584.1| DNA gyrase subunit B [Sulfobacillus acidophilus DSM 10332]
Length = 638
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 249/503 (49%), Positives = 351/503 (69%), Gaps = 13/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y++GKP+ LT + D G + F PD +F ++F TIA R+RE AF
Sbjct: 144 FVQHYAQGKPLDALT----RIGDTDETGFEVVFLPDPDIFE-EVRFSFETIANRLREQAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + + L+ E S E Y + GG+ +VQ+LN ++ +H + F + DG+ +
Sbjct: 199 LNSGVLLELKDEASGREM----RYHYTGGVVSFVQYLNLNRDVIHPKPIAFSAERDGVFV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+ ALQ+ +D+Y++T+ +AN+IRT++GG+H G KA+LTR N G+K +KD D +LS
Sbjct: 255 ETALQY-NDSYTETLFTFANTIRTLEGGSHEAGFKAALTRVCNDYGRKLGLLKDADNNLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT I+SV++P P+FEGQTKT+LGN EVR + + V E L+ Y E +P + I
Sbjct: 314 GDDVREGLTMILSVKLPEPQFEGQTKTKLGNSEVRGITEAIVAEGLSTYFEENPSIAKRI 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K+++A +A AA++AR+L R+KSVL SSSLPGKL DC+S P ESE+F+VEGDSAGGS
Sbjct: 374 LEKAIAAARAREAARKARELTRRKSVLESSSLPGKLTDCTSKDPAESELFLVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQA+LPLRGKILNVER + NEEI+ +I A+G G+ G++F RYH
Sbjct: 434 AKQGRDRQFQAVLPLRGKILNVERARLDKILGNEEIRAMITAIGTGI-GDEFDLTKARYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+I+I+TDADVDG+HIRTLLLTFFYRY L + G +Y+ PPLY V++GKQ +Y YDDA
Sbjct: 493 RIVIMTDADVDGSHIRTLLLTFFYRYMTPLIEAGYVYIAQPPLYLVKKGKQERYLYDDAA 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ + + +IQR+KGLGEM QL +TT+NPE R L ++ +EDAA A+ +F+ L
Sbjct: 553 LEQLLNEWGRGNDITIQRYKGLGEMNAEQLRDTTMNPETRTLLRVELEDAAAADWIFTVL 612
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V++R++ IQ A+LV NLD
Sbjct: 613 MGDKVESRRDFIQEHAHLVRNLD 635
>gi|405984209|ref|ZP_11042512.1| DNA gyrase, B subunit [Slackia piriformis YIT 12062]
gi|404388041|gb|EJZ83125.1| DNA gyrase, B subunit [Slackia piriformis YIT 12062]
Length = 649
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 249/513 (48%), Positives = 337/513 (65%), Gaps = 15/513 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y + RGK V L + + GT+ FWPD +VFT + +D++T+A R RE+AF
Sbjct: 144 YFIAFERGKTVEKLR----RIGDAEGTGTKTTFWPDPEVFTETLVYDYSTLAQRFREMAF 199
Query: 63 LNPKLTIALRKE-DSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
LN L I L E D D +E F FAGG+ ++V ++N K+ L+ + F + D T
Sbjct: 200 LNKGLHIELTDERDLDGSGKPKSETFQFAGGIVDFVNYINEGKETLNKPIYFEAESDDGT 259
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+QW S S+ +L +AN+I T +GGTH++G K +LTRT+N + +K+KD +L
Sbjct: 260 VEIAMQWSSSYSSNGILAFANNINTHEGGTHLDGFKNALTRTINDYARTHGILKEKDSNL 319
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ REGL IISV++ +P+FEGQTKT+LGN E+R +V +V + L E+LE +P
Sbjct: 320 SGDDTREGLAAIISVKLHDPQFEGQTKTKLGNTEIRGLVQGAVTKGLAEFLEENPAPAKR 379
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K+ ALKA AA++AR++ R+K VL S S+PGKLADCSS P SEIFIVEGDSAGG
Sbjct: 380 IIGKATQALKAREAARKAREMTRRKGVLDSFSMPGKLADCSSKDPALSEIFIVEGDSAGG 439
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQ RDR++QAILPLRGKILNVER ++ I +LI A+G + G+D+ +A RY
Sbjct: 440 SAKQARDRKYQAILPLRGKILNVERAGLNRALSSDTISSLITAIGTNI-GDDYNGDAARY 498
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVER-----GKQVQY 415
H+III+TDADVDGAHIR LLLTFFYRY L + G IY+ PPLY +++ GK ++Y
Sbjct: 499 HRIIIMTDADVDGAHIRCLLLTFFYRYMPDLINRGYIYIAQPPLYGLKKKNSKSGKILKY 558
Query: 416 CYDDAELKKVKSSFPSNA-LYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
++D + +A Y +QR+KGLGEM P QLWETT+ PE R L Q+ IEDAA A
Sbjct: 559 LFNDEAKDALMEELGDDAEKYDMQRYKGLGEMDPGQLWETTMEPETRTLLQVSIEDAAAA 618
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ S LMG +V+ RKE IQ A V LDI
Sbjct: 619 ELAVSELMGDQVEPRKEFIQKHARDVRF--LDI 649
>gi|435853738|ref|YP_007315057.1| DNA gyrase, B subunit [Halobacteroides halobius DSM 5150]
gi|433670149|gb|AGB40964.1| DNA gyrase, B subunit [Halobacteroides halobius DSM 5150]
Length = 636
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 241/504 (47%), Positives = 341/504 (67%), Gaps = 13/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQKY RG PVT + + GT I F PD ++F T ++F +T+ R++E AF
Sbjct: 142 YHQKYERGYPVTEFEKQ----GTTSKTGTEIAFKPDAEIFDT-LEFKFDTLKNRLQESAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L + L+ D EK++ +Y + GGLE +++ LN K PL D+V ++VD +
Sbjct: 197 LNKNLNLILK--DRRKEKDKEVKYCYDGGLEAFIKHLNKSKTPLVDDIVYVEREVDDTYV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A Q+ + Y++ + +AN+I T DGG H+ G K ++T+ LN ++ + D L+
Sbjct: 255 EIAFQY-NKGYNERIYSFANNINTHDGGYHLTGFKTAITKALNKYAEEKNVLNKTDPKLT 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G +REGLT +ISV++ +P+FEGQTKT+LGN E+R V V +YL YLE +P + ++
Sbjct: 314 GRDLREGLTAVISVKLTDPQFEGQTKTKLGNSEIRTTVQHVVSDYLPSYLERNPKLAKAV 373
Query: 242 LSKSLSALKAALAAKRARDLVRQ-KSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
++K+L A++A A+K+AR+L R+ K L S+SLPGKLADCSS TPEE E+++VEGDSAGG
Sbjct: 374 INKALEAVRARKASKKARELARKRKGPLSSNSLPGKLADCSSRTPEECELYLVEGDSAGG 433
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGR+R FQA+LPL+GKI+NVER + KN+EI +++ ALG G+ GE+F + LRY
Sbjct: 434 SAKQGRNRNFQAVLPLKGKIMNVERSRLNKILKNKEIASIVTALGAGI-GEEFNLDKLRY 492
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIII+TDADVDGAHI TLLLT FYRY L + IY+ PPLY+V G+Q +Y Y D
Sbjct: 493 HKIIIMTDADVDGAHICTLLLTLFYRYMPQLIENSHIYIAQPPLYQVTYGRQKKYLYTDQ 552
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
ELK+ N + SIQR+KGLGEM P QLW TT++PE R L+++ ++D A+ VF S
Sbjct: 553 ELKEYLKDKNRNRI-SIQRYKGLGEMNPGQLWTTTMDPEHRKLQKVEVDDEIIADDVFHS 611
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG++ R+E I N A+L N+D
Sbjct: 612 LMGSKASLRREFIMNNADLASNID 635
>gi|289433379|ref|YP_003463251.1| DNA gyrase subunit B [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289169623|emb|CBH26157.1| DNA gyrase, B subunit [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 646
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 246/504 (48%), Positives = 338/504 (67%), Gaps = 10/504 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y+Q++ RG V + D +GT + F PD Q+F+ +FD +T+ R RELA
Sbjct: 150 KYYQRFERGDVVMDMEEQ----GETDYRGTIVHFTPDPQIFSETTEFDFDTLRTRTRELA 205
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGIT 120
FLN LTI++ ED E ++ + GG+ YV+ LN K +H+ + + D I
Sbjct: 206 FLNRGLTISI--EDKREEHKVRKDFHYEGGIRSYVEHLNKAKDVIHEPPIYLEGERDDIM 263
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++++Q+ + +S ++ +AN+I T +GGTH G K +LTR +N +++K KD D +L
Sbjct: 264 VEISMQYNT-GFSSNIISFANNIHTYEGGTHESGFKTALTRVINDYARRNKVFKDSDDNL 322
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGE VREGLT IIS++ P+P+FEGQTKT+LGN E R + D+ E L +++ +PDV
Sbjct: 323 SGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARSITDKLFSEALNKFMMENPDVAKK 382
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K + A +A LAAKRAR++ R+ S L SSLPGKLADCSS PE SE++IVEGDSAGG
Sbjct: 383 IVEKGVVASRARLAAKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGG 442
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILP+RGKILNVE+ + NEEI+ + A+G G G DF RY
Sbjct: 443 SAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGG-DFDVSKSRY 501
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK+II+TDADVDGAHIRTLLLT FYRY + L D G IY+ PPLY+++ GKQ++Y Y D
Sbjct: 502 HKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDG 561
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+L+ +S + Y IQR+KGLGEM P QLW+TT+NPE R L Q+ I+DA +A+ F
Sbjct: 562 QLEDYLASLDKDTKYGIQRYKGLGEMNPEQLWDTTMNPEHRTLLQVNIKDAIDADETFEM 621
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG RV+ R++ I +NA + NLD
Sbjct: 622 LMGDRVEPRRKFIEENAQYVKNLD 645
>gi|253573849|ref|ZP_04851191.1| DNA gyrase, B subunit [Paenibacillus sp. oral taxon 786 str. D14]
gi|251846326|gb|EES74332.1| DNA gyrase, B subunit [Paenibacillus sp. oral taxon 786 str. D14]
Length = 636
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 248/506 (49%), Positives = 342/506 (67%), Gaps = 18/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG P V + GT+ F+PD ++FT FD+NT+ RIRELAF
Sbjct: 143 YQQEYHRGTP----QYDVRVIGDTTETGTKTTFYPDPEIFTETTVFDYNTLLTRIRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I+L +D Q + + GG+ EYV++LN +++ LH+ V G R D
Sbjct: 199 LNKGINISL----TDERTGQSESFHYEGGIMEYVRFLNQNREVLHEEPIYVEGQR---DM 251
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I ++++LQ+ +D Y++ + +AN+I T +GGTH G K++LTR +N +K+ +K+ D
Sbjct: 252 IQVEISLQY-NDGYTENIYSFANNIHTHEGGTHESGFKSALTRIINDYARKTGMIKENDS 310
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+G+ VREGLT IISV++P P+FEGQTKT+LGN EVR +V+ E L E+++ +P V
Sbjct: 311 NLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESLFAEKLQEFMDENPSVS 370
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
IL KSL A +A AA++AR+L R+KS L S+LPGKLADCSS SE++IVEGDSA
Sbjct: 371 RRILEKSLQASRAREAARKARELTRRKSALEVSALPGKLADCSSKDASISELYIVEGDSA 430
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILPLRGKILNVE+ + N EI+ +I ALG G+ GEDF
Sbjct: 431 GGSAKQGRDRHFQAILPLRGKILNVEKARLDRILGNAEIRAIITALGTGI-GEDFDISKA 489
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHKIII+TDADVDGAHIRTLLLTFF+RY + + + G +Y+ PPL+K+ER K V+Y
Sbjct: 490 RYHKIIIMTDADVDGAHIRTLLLTFFFRYMRKIIEAGYVYIAQPPLFKIERNKVVRYANS 549
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+ E ++ + F A ++QR+KGLGEM QLWETT++PE R+++Q+ I DA +A+ +F
Sbjct: 550 EKERDQIIAEFGEGAKVNVQRYKGLGEMNAEQLWETTMDPESRVMQQVSISDAIQADAIF 609
Query: 479 SSLMGARVDTRKELIQNAANLV-NLD 503
+LMG V+ R+E I A V NLD
Sbjct: 610 DTLMGDNVEPRREFIHEHAKYVKNLD 635
>gi|392530709|ref|ZP_10277846.1| DNA gyrase subunit B [Carnobacterium maltaromaticum ATCC 35586]
Length = 645
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 333/503 (66%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QK+ +GK L + DRQGT + F PD ++FT F+ ++ R+RELAF
Sbjct: 150 HYQKFHQGKVGEDLKI----IGDTDRQGTTVHFVPDPEIFTETTVFEFEKLSTRVRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L I++ ED + E+ + GG++ YV+ LN +K L D + + GI +
Sbjct: 206 LNKGLKISI--EDKREGQETLKEFHYEGGIKSYVEHLNHNKTVLFEDPIYIEGEQQGIVV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+ A+Q+ +D Y +L +AN+I T +GGTH G K +LTR +N +KSK +K+ + +L+
Sbjct: 264 EAAMQY-TDGYHTNLLSFANNIHTYEGGTHESGFKTALTRVINDYARKSKLMKENEENLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +IS++ P+P+FEGQTKT+LGN E R + D+ + ++L +P V +
Sbjct: 323 GEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEARTITDRLFSAHFDKFLMENPQVARRV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA LAAKRAR++ R+KS L S+LPGKLADCSS P SEIFIVEGDSAGGS
Sbjct: 383 IEKGILASKARLAAKRAREVTRKKSGLEISNLPGKLADCSSKDPSISEIFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RYH
Sbjct: 443 AKQGRSRLFQAILPIRGKILNVEKATLDKILANEEIRSLFTAMGTGFGG-DFDVSKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PPLY+V +GK++ Y DAE
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPLYQVRQGKKMVYLDSDAE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ P+ IQR+KGLGEM QLW TT++PE+R + Q+ ++DA EA+ VF L
Sbjct: 562 LEAYLKEIPAQPKPVIQRYKGLGEMDAEQLWSTTMDPERRRMLQVTVDDAIEADQVFEML 621
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG RV+ R++ I +NA + NLD
Sbjct: 622 MGDRVEPRRKFIEENAVYVQNLD 644
>gi|293376413|ref|ZP_06622647.1| DNA gyrase, B subunit [Turicibacter sanguinis PC909]
gi|325839309|ref|ZP_08166775.1| DNA gyrase, B subunit [Turicibacter sp. HGF1]
gi|292644969|gb|EFF63045.1| DNA gyrase, B subunit [Turicibacter sanguinis PC909]
gi|325490591|gb|EGC92906.1| DNA gyrase, B subunit [Turicibacter sp. HGF1]
Length = 639
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 247/504 (49%), Positives = 341/504 (67%), Gaps = 11/504 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y Q + +G P+ L HV + D GT ++F PD ++FT +D++ + RIRELA
Sbjct: 144 KYFQSFEKGTPMNEL--HV--IGESDTTGTEVKFKPDPEIFTETTVYDYDILRNRIRELA 199
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
FLN L I L ED EK Q +E+ F GG+ EYV +LN +K+ +H DV+ + DGI+
Sbjct: 200 FLNKGLKITL--EDLRSEKPQRHEFHFEGGISEYVSFLNKNKEVIHEDVIYVEGERDGIS 257
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q+ + + + +AN+I T +GGTH G +A+LTR +NS KK+ +K D +L
Sbjct: 258 VEIAMQYNT-GVAGNIYSFANNINTHEGGTHEAGFRAALTRIINSYAKKANLLKGDD-AL 315
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
GE +REGLT IIS + P+P+FEGQTKT+LGN EVR++ D E +L +P
Sbjct: 316 IGEDIREGLTAIISAKHPDPQFEGQTKTKLGNSEVRRIADNVFSEGFERFLMENPQAAKL 375
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
IL KSL A +A +AAKRAR++VR+KS L S KLADC S SE+FIVEGDSAGG
Sbjct: 376 ILDKSLMAARARMAAKRAREMVRRKSPLESLGFKSKLADCQSRDANISELFIVEGDSAGG 435
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRD +FQAILPLRGK+LNVE+ +Y N EI+++I A+G GV G++F E RY
Sbjct: 436 SAKQGRDNKFQAILPLRGKVLNVEKARIDKVYANNEIKSMIHAIGTGV-GDEFDIEKARY 494
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK++I+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPL+K+ +GK+++Y Y
Sbjct: 495 HKVVIMTDADVDGAHIRTLLLTFFYRYMRPLIENGYVYIAQPPLFKISQGKRIEYAYSQE 554
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+ V + + ++QR+KGLGEM QLWETT++PE R L Q+ ++DA EA+ +F
Sbjct: 555 ELEAVMETLSATPRPNVQRYKGLGEMNAEQLWETTMDPEVRTLLQVTLDDAVEADEIFDM 614
Query: 481 LMGARVDTRKELIQ-NAANLVNLD 503
LMG RV+ R+E I NA + NLD
Sbjct: 615 LMGDRVEPRREFIDANAKYVTNLD 638
>gi|219851686|ref|YP_002466118.1| DNA gyrase subunit B [Methanosphaerula palustris E1-9c]
gi|219545945|gb|ACL16395.1| DNA gyrase, B subunit [Methanosphaerula palustris E1-9c]
Length = 665
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/478 (48%), Positives = 334/478 (69%), Gaps = 12/478 (2%)
Query: 30 GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA 89
GT I F PD +F T + FD++ + R+RE+AFLN +TI + +D +E+ +
Sbjct: 195 GTIITFQPDDSIFET-VTFDYDVLVHRLREMAFLNRGITIRI----TDLRSGDKDEFHYD 249
Query: 90 GGLEEYVQWLNTDKKPLH-DVVGF-RKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTI 146
GGL E+VQ+L ++ LH DV+ RKD + + +++ALQ+ + +Y++T+ + NS+ T
Sbjct: 250 GGLREFVQYLIDGREVLHPDVIDLSRKDEENKLEVEVALQY-TQSYTETVYTFVNSVNTR 308
Query: 147 DGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQT 206
+GGTH+EG ++++TR +N+ +K+ +K+ ++L GE VREGLT +IS+++ NP+FEGQT
Sbjct: 309 EGGTHLEGFRSAITRAINNSARKANLIKNNTLTLRGEDVREGLTAVISIKLANPQFEGQT 368
Query: 207 KTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKS 266
K RLGN VR +VD V + L+EY E +P + +I K+ A +A AA+ AR+L R+KS
Sbjct: 369 KMRLGNSNVRGIVDSLVYQSLSEYFEENPKSIAAIFEKATVAAQAREAARNARELARRKS 428
Query: 267 VLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERK 326
L SS LPGKLADCS P +SE++IVEGDSAGGSAKQGR+RRFQAILPLRGKILNVE+
Sbjct: 429 TLESSGLPGKLADCSERDPAKSEVYIVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKA 488
Query: 327 DEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYR 386
+ M K+ EIQ LI A+G G+ G+ RYH I+++TDADVDGAHI+TLLLTFFYR
Sbjct: 489 TQHKMIKSVEIQVLISAIGAGI-GDRMDANRARYHHIVLMTDADVDGAHIQTLLLTFFYR 547
Query: 387 YQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEM 446
Y L + G +Y+ PPL+++ +GKQV+Y Y + E++++ + F + ++QR+KGLGEM
Sbjct: 548 YMPELIERGYVYIAQPPLFRIAKGKQVRYVYREEEMQQISAEFGDKGV-TVQRYKGLGEM 606
Query: 447 MPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 503
QLWETT+NP+ R+LKQ+ IEDA AN +F LMG V RK I ++A + NLD
Sbjct: 607 NADQLWETTMNPDTRVLKQIRIEDAGYANEIFEKLMGEDVSARKNFILRHAKEVTNLD 664
>gi|154684524|ref|YP_001419685.1| DNA gyrase subunit B [Bacillus amyloliquefaciens FZB42]
gi|154350375|gb|ABS72454.1| GyrB [Bacillus amyloliquefaciens FZB42]
Length = 638
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 241/503 (47%), Positives = 338/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q Y RG PV L + D+ GT F PD ++F I +D++ ++ R+RELAF
Sbjct: 143 HYQAYERGVPVADLEV----IGDTDKTGTITHFVPDPEIFKETIVYDYDLLSNRVRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 199 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N ++ K+ D +LS
Sbjct: 257 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D L +L +PD I
Sbjct: 316 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLLENPDSARKI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 376 VEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 436 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D +
Sbjct: 495 KVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRVEYAYNDKQ 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ P + +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 555 LDELLKELPQSPKPGLQRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEML 614
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 615 MGDKVEPRRNFIEANARYVKNLD 637
>gi|323450751|gb|EGB06631.1| hypothetical protein AURANDRAFT_29093 [Aureococcus anophagefferens]
Length = 698
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 256/531 (48%), Positives = 350/531 (65%), Gaps = 43/531 (8%)
Query: 7 YSRGKPVTTLTCHVLPVDSKD--RQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
+SRG P +T VD+ GTR+ F PD +F + FD++ +A R+ ELAFLN
Sbjct: 179 FSRGTPTGDMT----RVDAAPGAATGTRVVFSPDGDIFEKTV-FDYDVLAARMDELAFLN 233
Query: 65 PKLTIAL----------RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVG--- 111
+ ++L +K D P + + GG+ EY +L ++K PLH +G
Sbjct: 234 AGVELSLTDFREPKKKKKKGDGGPRVDVFRH---DGGISEYADFLTSEKTPLHAALGPSV 290
Query: 112 -----------FRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLT 160
R DG+ ++ AL+W SDAY++ + +AN IRT DGGTH++G+++ +
Sbjct: 291 TKGKHTKEAFVARGTKDGVEVECALRWSSDAYAEVTVSFANGIRTADGGTHVDGLRSVVA 350
Query: 161 RTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVD 220
R++N+ K+S + K + + GE+VREGLT ++ V VP PEFEGQTKTRLG+P VR+VVD
Sbjct: 351 RSVNAAAKRSPSGKSDNAYVPGEYVREGLTAVLLVNVPEPEFEGQTKTRLGSPGVRQVVD 410
Query: 221 QSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADC 280
V L + E HP L +I+ K+L+A KAA AAK ARDLVR+KS+L ++ LPGKLADC
Sbjct: 411 AVVGAALQQLFEWHPQALKAIVDKALAAQKAAGAAKAARDLVRRKSLLATTVLPGKLADC 470
Query: 281 SSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILP----LRGKILNVERKDEAAMYKNEE 336
S SEIFIVEGDSA GSAKQGRDR QAILP LRGKILNVE+ +Y N E
Sbjct: 471 SLRDAALSEIFIVEGDSAAGSAKQGRDRESQAILPLRAVLRGKILNVEKCAPERIYLNAE 530
Query: 337 IQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGC 396
+Q LI ALGLGV+GE+F ++ LRYH+I+I+TDADVDGAHIR L+LTFFYRYQ++L ++G
Sbjct: 531 LQALISALGLGVRGEEFNRDNLRYHRIVIMTDADVDGAHIRALILTFFYRYQRSLIEDGH 590
Query: 397 IYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTL 456
+++ PPLYKV RG++ YC+ D +L +++ + +IQRFKGLGEMMP QLW TT+
Sbjct: 591 VFIACPPLYKVSRGRKDTYCWSDDDL---EAALAGDGKATIQRFKGLGEMMPNQLWATTM 647
Query: 457 NPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+P R ++Q+V++DAA+A+ V + LMG V RKE I AN V LD D+
Sbjct: 648 DPTARKMQQVVVDDAAKADKVITLLMGDSVAERKEYI--VANSVALDAEDL 696
>gi|312792288|ref|YP_004025211.1| DNA gyrase subunit B [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312179428|gb|ADQ39598.1| DNA gyrase, B subunit [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 637
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 243/507 (47%), Positives = 349/507 (68%), Gaps = 22/507 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RGKP TC + + +R GT++ F PD ++F T I+FD + I R+RELAF
Sbjct: 146 YYQRYERGKP----TCELKVIGETNRTGTKVTFLPDDEIFET-IEFDGDVILQRLRELAF 200
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDG 118
LN + I R++++ P + +Y+ GG+ E+V++LN +K+ LH + + + +
Sbjct: 201 LNKGIRIVFVDEREKNAKPIELKYD-----GGIAEFVKFLNRNKEVLHQEPIYIEGEKND 255
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I I++A+Q+ D + + + +AN+I TIDGGTH+ G K ++T+ +N KK +K D
Sbjct: 256 ILIEVAVQYTED-FGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEYAKKYNFIKG-DT 313
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
L GE +R+G+T I+SV++ P+FEGQTKT+LGN E R V+ V E L +LE +PDV
Sbjct: 314 QLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSEKLAAFLEENPDVS 373
Query: 239 DSILSKSLSALKAALAAKRARDLV-RQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K++ A KA AK+AR+LV ++KS L SS+LPGKLADCS P + EIFIVEGDS
Sbjct: 374 KKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDPAKCEIFIVEGDS 433
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRR+QAILPL GK+LNVE+ + +Y N+++ LI+ALG+G+ G D +
Sbjct: 434 AGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALGVGI-GNDIDLKK 492
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHKIII+ DADVDG+HIRTLLLTFFYRY + L + G IY+ PPLYK+ +GKQV+Y Y
Sbjct: 493 LRYHKIIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLYKITKGKQVRYAY 552
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ EL+++ +QRFKGLGEM +LWETT++P +R+L ++ +EDA A +
Sbjct: 553 NEKELQRILQEMKDA---QVQRFKGLGEMNAQELWETTMDPARRILLRVELEDAVMAEEI 609
Query: 478 FSSLMGARVDTRKELIQ-NAANLVNLD 503
F+ LMG +V+ R+E I+ NA + NLD
Sbjct: 610 FTILMGDKVEPRREFIEKNAKYVRNLD 636
>gi|317120855|ref|YP_004100858.1| DNA gyrase subunit B [Thermaerobacter marianensis DSM 12885]
gi|315590835|gb|ADU50131.1| DNA gyrase subunit B [Thermaerobacter marianensis DSM 12885]
Length = 635
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 245/505 (48%), Positives = 341/505 (67%), Gaps = 20/505 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RGKP T L V D D GT +RF PD ++F +F ++ + GR+RE+A
Sbjct: 141 HRQRYRRGKPDTDLEV-VGTTDPAD-TGTYVRFKPDPEIFEET-EFKYDVVVGRLREIAL 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I L+ E + + N + F GGL +V LN K+PLH + + ++ + DG+ +
Sbjct: 198 LNSGLYIELKDERT----GERNLFQFMGGLRSFVALLNRTKEPLHPEPISYKGERDGVEV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQW + +Y +T+ +AN+I T +GGTH G K +LTR +N +K+ +K+ + +LS
Sbjct: 254 EMALQWTT-SYVETLYSFANTIHTHEGGTHEAGFKMALTRVVNDYARKANLIKNGEENLS 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT ++SV++P P+FEGQTKT+LGN EVR VVD E L Y E +P V +
Sbjct: 313 GDDIREGLTAVLSVKLPEPQFEGQTKTKLGNSEVRGVVDSVTGEALATYFEENPQVARRV 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+++A++A AA++AR+L R+KS L ++LPGKL DC+ P +E+FIVEGDSAGGS
Sbjct: 373 VEKAITAMRAREAARKARELTRRKSALEVTALPGKLTDCTVRDPAMAELFIVEGDSAGGS 432
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQA+LPLRGKILNVE+ + ++EI+ LI A+G G+ GEDF + RYH
Sbjct: 433 AKQGRDRRFQAVLPLRGKILNVEKARLDKILAHDEIRALITAIGTGI-GEDFDIQKARYH 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KII++TDADVDGAHIRTLLLTFF+RY K L + G +Y+ PPLY V GK+ Y YDD +
Sbjct: 492 KIILMTDADVDGAHIRTLLLTFFFRYMKPLIEAGYVYIAQPPLYLVRMGKEEHYFYDDDQ 551
Query: 422 L----KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
L +++ P+ QRFKGLGEM QLWETT+NPE R L Q+ +EDA A+ +
Sbjct: 552 LEAFFRQIGKRMPA------QRFKGLGEMNAEQLWETTMNPETRTLLQVTLEDAMAADQI 605
Query: 478 FSSLMGARVDTRKELIQNAANLVNL 502
FS LMG+RV+ R+E I+ A V
Sbjct: 606 FSILMGSRVEPRREFIEQHARKVRF 630
>gi|424780808|ref|ZP_18207678.1| DNA gyrase subunit B [Catellicoccus marimammalium M35/04/3]
gi|422842733|gb|EKU27182.1| DNA gyrase subunit B [Catellicoccus marimammalium M35/04/3]
Length = 646
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/506 (47%), Positives = 336/506 (66%), Gaps = 13/506 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG+ V L + DR+GT + F PD +F F+ +T+A R+RELAF
Sbjct: 148 YFQEYKRGQVVDDLKI----IGDTDRRGTEVHFVPDPTIFKETTVFNFDTLATRVRELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN L I + ED + Q EY + GG+ YV++LN +K+ L + + + + ITI
Sbjct: 204 LNRGLKITI--EDKRKGQEQQREYHYEGGICSYVEFLNDEKEVLFEPPIYCEGEQNNITI 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y +L +AN+I T +GG H G K++LTR +N+ ++ K +K+ D L
Sbjct: 262 EVAMQYTS-GYQSKILSFANNIHTYEGGMHESGFKSALTRVINNYARRQKMIKENDDKLM 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +IS++ P P+FEGQTKT+LGN EVR V D+ E ++L +P+V +
Sbjct: 321 GEDVREGLTAVISIKHPEPQFEGQTKTKLGNSEVRSVTDRLFAEAFDKFLMENPNVAKKV 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A KA LAAKRAR+ R+K+ L S+LPGKLADCSS E+ E+FIVEGDSAGGS
Sbjct: 381 VEKALLATKARLAAKRAREATRKKNELEISNLPGKLADCSSREAEKCELFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR +QAILP+RGKILNVE+ + NEEI++L A+G G G+DF E RYH
Sbjct: 441 AKQGRDRNYQAILPIRGKILNVEKATLDKILANEEIRSLFTAMGTGF-GKDFDVEKARYH 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD--D 419
K++I+TDADVDGAHIR LLLT FYRY + L ++G +Y+ PPLY V++GK + Y D
Sbjct: 500 KLVIMTDADVDGAHIRILLLTLFYRYMRPLVEKGYVYIAQPPLYGVKQGKNITYVPSGKD 559
Query: 420 AE--LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
AE L++V S P +QR+KGLGEM QLWETT++PE R + ++ I+DA EAN +
Sbjct: 560 AEDQLQQVLQSLPKTPKPIVQRYKGLGEMDEDQLWETTMDPEHRAMARVTIDDAEEANRI 619
Query: 478 FSSLMGARVDTRKELIQNAANLVNLD 503
F LMG +V+ R++ I+ A+ +D
Sbjct: 620 FEMLMGDQVEPRRQFIEENAHYATID 645
>gi|346722695|ref|YP_001178861.2| DNA gyrase subunit B [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|345106666|gb|ABP65670.2| DNA gyrase, B subunit [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 639
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 246/505 (48%), Positives = 345/505 (68%), Gaps = 18/505 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+QKY RGKPV C + + R GT++ F PD ++F T I+FD + + R+RELAF
Sbjct: 148 YYQKYERGKPV----CDLKVIGQTQRTGTKVTFLPDDEIFET-IEFDADVLLQRLRELAF 202
Query: 63 LNPKLTIALRKEDSDPEKNQYN-EYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
LN + I E EKN E + GG+ E+V++LN +K+ LH + + + + I
Sbjct: 203 LNKGIRITFTDER---EKNPKTIELKYDGGIAEFVKFLNRNKEVLHPEPIYIEGEKNQIL 259
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q+ +D + + + +AN+I TIDGGTH+ G KA++T+ +N KK VK D L
Sbjct: 260 VEVAIQY-TDQFGENIYSFANNIATIDGGTHLVGFKAAVTKAVNEYAKKYNFVKG-DNQL 317
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
GE +R+G+T ++SV++ P+FEGQTKT+LGN E R V+ V E L +LE +PDV
Sbjct: 318 LGEDIRDGMTAVVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSEKLAAFLEENPDVSKK 377
Query: 241 ILSKSLSALKAALAAKRARDLV-RQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K+L A KA A++AR+LV ++KS L SS+LPGKLADCS PE+ EIFIVEGDSAG
Sbjct: 378 IIDKALLAAKAREEARKARELVIKRKSALDSSNLPGKLADCSEKDPEKCEIFIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDRR+QAILPL GK+LNVE+ +Y N+++ LI+ALG G+ G D + LR
Sbjct: 438 GSAKQGRDRRYQAILPLWGKMLNVEKASPDKIYSNDKLLPLIQALGCGI-GNDLDLKKLR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+I++ DADVDG+HIRTLLLTFFYRY + L + G IY+ PPLYK+ +GKQV+Y Y+D
Sbjct: 497 YHKVIVMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLYKITKGKQVRYAYND 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ +QRFKGLGEM +LWETT++P +R+L ++ +EDA A +F+
Sbjct: 557 KELQKILQEMKDA---QVQRFKGLGEMNAEELWETTMDPARRILLRVELEDAVMAEEIFT 613
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+E I+ NA + NLD
Sbjct: 614 ILMGEKVEPRREFIEKNAKYVRNLD 638
>gi|354559350|ref|ZP_08978600.1| DNA gyrase, B subunit [Desulfitobacterium metallireducens DSM
15288]
gi|353542939|gb|EHC12399.1| DNA gyrase, B subunit [Desulfitobacterium metallireducens DSM
15288]
Length = 644
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 243/503 (48%), Positives = 345/503 (68%), Gaps = 13/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ+Y RGK +T LT + + GT+I F PD ++F F+ + +A R+REL+F
Sbjct: 152 YHQEYERGKTMTELTI----IGESEGSGTQITFAPDPEIFEETTVFEFDILAHRLRELSF 207
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN K++I L D K++ Y+ GG+ ++V+++N +K LH + F D + +
Sbjct: 208 LNKKVSITL----IDERKDEREVYYHTGGIIDFVKYINKNKDVLHPQPIYFESFKDNVEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ +Q+ +D+Y++ + YAN+I T +GGTH G KA+LTR +N +K+ +K D +LS
Sbjct: 264 EIGIQY-NDSYTENLFSYANNINTQEGGTHEAGFKAALTRVVNDYARKNNIIKANDANLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REG+T +ISV+VP P+FEGQTKT+LGN E+R +VD V E L +LE +P V +
Sbjct: 323 GDDIREGMTAVISVKVPEPQFEGQTKTKLGNSEIRSIVDSIVGEGLNIFLEENPAVGKKV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KSL AL+A AA++AR+L R+KS L SSLPGKLADCS P+ E+++VEGDSAGGS
Sbjct: 383 IEKSLQALRAREAARKARELTRRKSALEVSSLPGKLADCSWKEPDLCEMYLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILNVE+ + N EI+ +I A+G G+ +DF + RYH
Sbjct: 443 AKQGRDRRFQAILPLRGKILNVEKARLDRILGNAEIRAMITAMGTGIS-DDFDLDKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIR LLLTFFYR+ K L D G +Y+ PPLY+V++G+ V Y Y D E
Sbjct: 502 KLIIMTDADVDGAHIRILLLTFFYRFMKPLIDNGYVYIAQPPLYQVKKGRDVSYQYTDVE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K + IQR+KGLGEM P QLWETT++P +R + Q+ ++DA A+ +F+ L
Sbjct: 562 LSKALDRVGRDKAV-IQRYKGLGEMNPEQLWETTMDPAKRTILQVTMDDAMIADELFTKL 620
Query: 482 MGARVDTRKE-LIQNAANLVNLD 503
MG +V+ R+E +I+ A ++ NLD
Sbjct: 621 MGDKVEPRREFIIKYAKDVRNLD 643
>gi|385267030|ref|ZP_10045117.1| DNA topoisomerase IV subunit B [Bacillus sp. 5B6]
gi|385151526|gb|EIF15463.1| DNA topoisomerase IV subunit B [Bacillus sp. 5B6]
Length = 640
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 338/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q Y RG PV L + D+ GT F PD ++F ++D++ ++ R+RELAF
Sbjct: 145 HYQAYERGVPVADLEV----IGDTDKTGTITHFVPDPEIFKETTEYDYDLLSNRVRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 201 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N ++ K+ D +LS
Sbjct: 259 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLS 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D L +L +PD I
Sbjct: 318 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLLENPDSARKI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 378 VEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 438 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D +
Sbjct: 497 KVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRVEYAYNDKQ 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ P + +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 557 LDELLKELPQSPKPGLQRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEML 616
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 617 MGDKVEPRRNFIEANARYVKNLD 639
>gi|452210943|ref|YP_007491057.1| DNA gyrase subunit B [Methanosarcina mazei Tuc01]
gi|452100845|gb|AGF97785.1| DNA gyrase subunit B [Methanosarcina mazei Tuc01]
Length = 634
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 255/504 (50%), Positives = 342/504 (67%), Gaps = 13/504 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y Q+Y RGKP V + + D GT+ F PD ++F T F ++ + R+RELA
Sbjct: 141 KYFQRYIRGKP----ESDVREIGTSDTTGTKTTFKPDTKIFETT-DFQYDILLNRLRELA 195
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
FLN L I L K+ PE Q + ++GG+ E+V++LN K+PLH+ + F + D +
Sbjct: 196 FLNRGLIINL-KDLRSPE-GQAETFNYSGGIIEFVEYLNKKKQPLHEKPIYFERQRDDMV 253
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q+ ++ Y++ + +AN+I T +GGTHI G K +LTR N K +K K+ D L
Sbjct: 254 VEIAMQY-TNGYTENVYSFANNINTHEGGTHIIGFKTALTRVANDYIKANKLSKE-DEKL 311
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
+G+ VREGLT IISV++ P+FEGQTKT+LGN EV+ +VD V + L EY E +P V +
Sbjct: 312 TGDDVREGLTAIISVKLMEPQFEGQTKTKLGNSEVKGIVDSLVTDGLAEYFEENPKVANI 371
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
IL K+L A +A AAK+AR+L R+KSVL S+LPGKLADCS+ P E EI+IVEGDSAGG
Sbjct: 372 ILDKALLAQRAREAAKKARELTRRKSVLEVSTLPGKLADCSNKNPAECEIYIVEGDSAGG 431
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILPLRGKILNVE+ A + KN E+ +LI A+G GV EDF E RY
Sbjct: 432 SAKQGRDRSFQAILPLRGKILNVEKSRLAKILKNNEVISLITAIGTGVS-EDFDLENARY 490
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIII+TDADVDGAHIRTLLLT F+RY + L D G +Y+ PPLYK+++GK Y Y D
Sbjct: 491 HKIIIMTDADVDGAHIRTLLLTLFFRYMRHLIDAGYVYIAQPPLYKIKKGKMDYYAYSDK 550
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL + +IQR+KGLGEM P QLWETT++PE R L Q+ +EDA A+ +F
Sbjct: 551 ELADKVKELGEKGV-AIQRYKGLGEMNPGQLWETTMDPESRTLLQVTLEDAIRADEIFRI 609
Query: 481 LMGARVDTRKELIQ-NAANLVNLD 503
LMG V+ R+ I+ +A +V+LD
Sbjct: 610 LMGDEVEPRRNFIETHAKEVVDLD 633
>gi|427412749|ref|ZP_18902941.1| DNA gyrase, B subunit [Veillonella ratti ACS-216-V-Col6b]
gi|425715565|gb|EKU78551.1| DNA gyrase, B subunit [Veillonella ratti ACS-216-V-Col6b]
Length = 633
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 246/504 (48%), Positives = 344/504 (68%), Gaps = 12/504 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E + RG T L + S + GT + F PD ++F T + F+ N + R++ELA
Sbjct: 139 EQEISFERGHLRTPLKV----IGSANDTGTTVIFKPDAEIFETTV-FEFNVLCTRLQELA 193
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
FLN L I L D PE++ + + GG+ +V++LN +K ++ ++ D +
Sbjct: 194 FLNKGLRITLT--DKRPEEDVVESFMYEGGIVSFVEFLNENKDLVNPTIIDVENTRDDVV 251
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+D+A Q+ +D+YS+ +L + N+I TIDGGTH+ G +++LTRTLN G+K+ +KD + +L
Sbjct: 252 VDVAFQY-NDSYSENLLSFVNNINTIDGGTHLSGFRSALTRTLNDYGRKAGLIKDNESNL 310
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ VREGLT +ISV+V +P+FEGQTK +LGN EV+ + D V E L +LE HP
Sbjct: 311 SGDDVREGLTAVISVKVLDPQFEGQTKAKLGNSEVKGITDTVVSEGLKTFLEEHPAEAKR 370
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K+ +A +A AA++AR+L R+K+ L SSLPGKLADCS P +EI++VEGDSAGG
Sbjct: 371 IIDKATTANRAREAARKARELTRRKNALEVSSLPGKLADCSEKDPLMTEIYLVEGDSAGG 430
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDRR+QAILPLRGKILNVE+ + N EI+++I A G G+ GEDF + RY
Sbjct: 431 SAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTGI-GEDFDLDKSRY 489
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIII+TDADVDGAHIRTLLLTFFYRY K L +EG +Y+ PPLY++++GK Y Y DA
Sbjct: 490 HKIIIMTDADVDGAHIRTLLLTFFYRYMKPLIEEGRVYIAQPPLYQIKKGKGHWYVYSDA 549
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
E+ + + +IQR+KGLGEM P QLWETT+NPE R + Q+ +ED+ EA+ +FS
Sbjct: 550 EMAAKLDEIGRDNI-TIQRYKGLGEMNPEQLWETTMNPENRTILQVSLEDSIEADKIFSV 608
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG +V+ R++ I++ A LV NLD
Sbjct: 609 LMGDKVEPRRKFIEDNAKLVRNLD 632
>gi|394994154|ref|ZP_10386883.1| DNA gyrase subunit B [Bacillus sp. 916]
gi|393805003|gb|EJD66393.1| DNA gyrase subunit B [Bacillus sp. 916]
Length = 638
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 338/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q Y RG PV L + D+ GT F PD ++F ++D++ ++ R+RELAF
Sbjct: 143 HYQAYERGVPVADLEV----IGDTDKTGTITHFVPDPEIFKETTEYDYDLLSNRVRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 199 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N ++ K+ D +LS
Sbjct: 257 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D L +L +PD I
Sbjct: 316 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLLENPDSARKI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 376 VEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 436 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D +
Sbjct: 495 KVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRVEYAYNDKQ 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ P + +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 555 LDELLKELPQSPKPGLQRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEML 614
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 615 MGDKVEPRRNFIEANARYVKNLD 637
>gi|402570644|ref|YP_006619987.1| DNA gyrase subunit B [Desulfosporosinus meridiei DSM 13257]
gi|402251841|gb|AFQ42116.1| DNA gyrase subunit B [Desulfosporosinus meridiei DSM 13257]
Length = 644
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 241/503 (47%), Positives = 346/503 (68%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ+YS GKP T L + V ++ GT+I F PD ++F + +D N +A R+REL+F
Sbjct: 153 YHQEYSIGKPTTKL----INVGETNKSGTKISFMPDSEIFEETV-YDFNILAHRLRELSF 207
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
LN +TI L E +D ++ + GG++++V++LN +K LH F + + D + +
Sbjct: 208 LNKSVTINLTDERTDVKET----FLHTGGIQDFVRYLNKNKDCLHPQPIFIETLKDSVQV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ +Q+ +D Y++ + YAN+I T +GGTH G K++LTR +N +K+ +K D +L+
Sbjct: 264 EVCMQY-NDGYAENLFSYANNINTQEGGTHEAGFKSALTRVVNDYARKNNMIKAGDSNLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT +ISV+VP+P+FEGQTKT+LGN E+R +VD + E L+ +LE +P +
Sbjct: 323 GDDIREGLTAVISVKVPDPQFEGQTKTKLGNSEIRGIVDSATGEGLSTFLEENPSIARKF 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KS+ A +A AA++AR+L R+KS L +SLPGKLADCS P+ E++IVEGDSAGGS
Sbjct: 383 IDKSVQAARARDAARKARELTRRKSALEGTSLPGKLADCSWKEPDLCEMYIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKI+NVE+ + N EI+ +I A+G G+ +DF E RYH
Sbjct: 443 AKQGRDRRFQAILPLRGKIINVEKARLDKILGNTEIRAMITAMGTGIS-DDFDIEKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLTFFYRY K L + +Y+ PPLYKV++GK +QY Y + E
Sbjct: 502 KLIIMTDADVDGAHIRTLLLTFFYRYMKPLIENNFVYIAQPPLYKVKKGKDIQYVYTEPE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L KV + + IQR+KGLGEM P QLWETT++P +R + ++ +EDA +FS L
Sbjct: 562 LTKVLEKIGRDKV-EIQRYKGLGEMNPEQLWETTMDPAKRTILRVTMEDAMRTEEMFSVL 620
Query: 482 MGARVDTRKELIQN-AANLVNLD 503
MG +V+ R++ I A ++ NLD
Sbjct: 621 MGDKVEPRRDFINRYAKDVRNLD 643
>gi|404369616|ref|ZP_10974950.1| DNA gyrase subunit B [Clostridium sp. 7_2_43FAA]
gi|226914440|gb|EEH99641.1| DNA gyrase subunit B [Clostridium sp. 7_2_43FAA]
Length = 637
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 250/505 (49%), Positives = 357/505 (70%), Gaps = 16/505 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ QKYSRG VT L+ + + GT++ F PD ++F ++D + +A R+RELAF
Sbjct: 144 WQQKYSRGNAVTDLS----KIGKTEEHGTKVSFKPDTEIFEET-EYDFDILANRLRELAF 198
Query: 63 LNPKLTIALRKEDSDP-EKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
LN + I L SD E+ + Y + GG++E+V +L+ +K+ LH D + + DGI
Sbjct: 199 LNKGIKIIL----SDAREEGKTEVYHYEGGIKEFVSYLSRNKEVLHQDPIYIEGEKDGII 254
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
++++LQ+ +D+Y++ + +AN+I TI+GGTH+ G K +LTR +N GKK +K+ D +L
Sbjct: 255 VEISLQY-NDSYTENLYSFANNIDTIEGGTHLSGFKTALTRVINDYGKKFNHLKENDKNL 313
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ +REGLT ++SV++ P+FEGQTKT+LGN EVR VVD V E ++ +LE +P +
Sbjct: 314 SGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRGVVDSIVGEGVSIFLEENPGIGKI 373
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K+L A +A AA++AR+L R KSVL SSLPGKLADCSS P E EI+IVEGDSAGG
Sbjct: 374 IIDKALMAARARDAARKARELTR-KSVLERSSLPGKLADCSSKDPLECEIYIVEGDSAGG 432
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGR+RRFQAILPLRGKILNVE++ + + I++++ A G G+ G+DF +E LRY
Sbjct: 433 SAKQGRNRRFQAILPLRGKILNVEKQRLDRILTADSIKSMVTAFGAGI-GDDFDEEKLRY 491
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
++III+TDADVDGAHIRTLLLTFF+RY + L D G +Y+ PPLY+V++ K+ Y Y DA
Sbjct: 492 NRIIIMTDADVDGAHIRTLLLTFFFRYMRGLLDGGHVYIAQPPLYQVKKNKKEYYAYSDA 551
Query: 421 ELKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ S + +IQR+KGLGEM QLW+TT++PE+R+L + +EDA A+ +F+
Sbjct: 552 ELEKLLSEIGGKDNSTNIQRYKGLGEMNANQLWDTTMDPEKRVLLKATVEDAIAADEIFT 611
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+E IQ NA + NLD
Sbjct: 612 ILMGDKVEPRREFIQKNAKKVSNLD 636
>gi|323487683|ref|ZP_08092941.1| DNA gyrase subunit B [Planococcus donghaensis MPA1U2]
gi|323398417|gb|EGA91205.1| DNA gyrase subunit B [Planococcus donghaensis MPA1U2]
Length = 642
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 331/503 (65%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++ K+ RG L + D GT IRF D ++F ++ + + R+RELA+
Sbjct: 147 HYIKFERGAVTEELNV----IGDSDHTGTTIRFKADAEIFKETTVYEFDILDHRLRELAY 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITI 121
LN L I ++ E EK + Y F GG++ YV+ LN K PLH+ F + DGIT+
Sbjct: 203 LNRGLKIVVKDEREGEEKEKI--YHFEGGIKSYVEHLNKSKDPLHEEAIFVEAERDGITV 260
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y+ + +AN+I T +GGTH G K +LTR +N G+K +K++D++L+
Sbjct: 261 EVAMQYNA-GYAANIFSFANNINTHEGGTHESGFKTALTRVVNDYGRKKSMLKEQDLNLT 319
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IISV+ P+P+FEGQTKT+LGN EV +V+ +L +P V I
Sbjct: 320 GDDVREGLTAIISVKHPDPQFEGQTKTKLGNTEVSTIVNNLFSNGFERFLLENPAVSKKI 379
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A A +AAK+AR+ R+KSVL SSLPGKLADCSS P+ SEI+IVEGDSAGGS
Sbjct: 380 VEKGIMASHARMAAKKAREFTRRKSVLEVSSLPGKLADCSSRDPKISEIYIVEGDSAGGS 439
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILPLRGKILNVE+ + N+EI+N+I ALG G+ GE+F E RYH
Sbjct: 440 AKSGRDRHFQAILPLRGKILNVEKARLDRILTNDEIRNIITALGTGI-GEEFNLEKARYH 498
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTF +RY + L + G IY+ PPL+++++GK V+Y Y DA+
Sbjct: 499 KIVIMTDADVDGAHIRTLLLTFLFRYMRPLLEAGYIYIAQPPLFQIKQGKHVEYVYTDAQ 558
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LK + +IQR+KGLGEM QLW+TT++P+ R L Q+ + DA A+ F L
Sbjct: 559 LKTALENLSPTPKPNIQRYKGLGEMNATQLWDTTMDPDVRTLLQVTLNDAMVADETFHIL 618
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG V+ R+ I +NA + NLD
Sbjct: 619 MGDEVEPRRNFIEENAKYVKNLD 641
>gi|150387859|ref|YP_001317908.1| DNA gyrase subunit B [Alkaliphilus metalliredigens QYMF]
gi|149947721|gb|ABR46249.1| DNA gyrase, B subunit [Alkaliphilus metalliredigens QYMF]
Length = 635
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 245/503 (48%), Positives = 343/503 (68%), Gaps = 13/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG P+T V V GT I F D ++F I + + T+ R+RE+AF
Sbjct: 143 YKQRYERGIPIT----DVQEVGETTETGTTITFKADSEIFE-EILYVYTTLENRLREMAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR D E+ + + + GG++E+V LN +++ L D V+ F K +G +
Sbjct: 198 LNKGIKITLR--DLREEEVMESSFRYDGGIQEFVMHLNRNREALIDKVIYFEKQKEGSVV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ AY++ + YAN+I T +GGTH+ G KA LTR +N +K+ +K+K+I+L
Sbjct: 256 EVALQYTG-AYTENIFSYANTINTHEGGTHLSGFKAGLTRVINEYARKNGILKEKEINLL 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT IISV++ +P+FEGQTKT+LGN E++ +V+ S +YL +LE +P I
Sbjct: 315 GEDIREGLTAIISVKMADPQFEGQTKTKLGNSEMKGIVESSTSQYLEAFLEENPHEAKII 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KSL A +A AAK+AR+L R+K L +++LPGKLADC+ P SEI+IVEG+SAGGS
Sbjct: 375 IEKSLRAQRAREAAKKARELTRRKGALENTALPGKLADCAEKDPALSEIYIVEGNSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR QAILPLRGKILNVE+ + + EI+N+I A G G+ G +F E +RYH
Sbjct: 435 AKQGRDRATQAILPLRGKILNVEKSRLDRILGSAEIRNMITAFGTGI-GIEFDIEKVRYH 493
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFF+RY K L + G +Y+ PPLYK+++GK Y Y D E
Sbjct: 494 KIVIMTDADVDGAHIRTLLLTFFFRYMKPLIELGYVYIAQPPLYKLKKGKVENYAYSDEE 553
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
++K+ +A IQR+KGLGEM P QLW+TT+NPE R Q+ IEDAA A+ +F++L
Sbjct: 554 MQKIIVQMGGSA--DIQRYKGLGEMNPEQLWDTTMNPETRTFLQVSIEDAAGADDIFNTL 611
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V+ R++ I QN+ + NLD
Sbjct: 612 MGDKVEPRRQFIEQNSKYVTNLD 634
>gi|342216026|ref|ZP_08708673.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 375 str. F0436]
gi|341586916|gb|EGS30316.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 375 str. F0436]
Length = 640
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 246/508 (48%), Positives = 349/508 (68%), Gaps = 18/508 (3%)
Query: 3 YHQKYSRGKPVTTL----TCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIR 58
Y Q++S+G +T L TC K+ GT+I F PD+++FT +F + +A R R
Sbjct: 143 YQQEFSKGDTLTKLKEIGTC------GKEEHGTKISFCPDEEIFTETTEFSYEVLAKRFR 196
Query: 59 ELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-D 117
E+AFLN + I + +K Y+ + GG++ +V++LN K P+H V + + V +
Sbjct: 197 EMAFLNKGVKIVFEDQRETEKKETYH---YEGGIKSFVEFLNKKKTPVHQEVIYMEQVKE 253
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
GI++++A+Q+ +D+YS+ +L +AN+I T +GGTH+ G +++LTR++N G++ +K+K+
Sbjct: 254 GISVEVAMQY-TDSYSENILTFANNIHTEEGGTHLSGFRSALTRSINEYGRQYNLIKEKE 312
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+LSGE VREG+T IISV++P P+FEGQTK +LGN E R +VD V E L +LE +P +
Sbjct: 313 ENLSGEDVREGITGIISVKLPQPQFEGQTKAKLGNSEARTIVDAVVTENLETFLEENPKI 372
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+IL K+LSA +A AA++ARDL R++S+L S+ LPGKL DC + +EIF+VEGDS
Sbjct: 373 SKAILQKALSARRAREAARKARDLTRKRSILDSTVLPGKLQDCQLDDNKVTEIFLVEGDS 432
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAK GRD QAILPLRGKI+NVE+ + ++EI+ +I A G GV G +F E
Sbjct: 433 AGGSAKGGRDHMTQAILPLRGKIMNVEKARLDRILNSDEIKAMITAFGTGV-GSEFNIEK 491
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG-KQVQYC 416
LRY KIII+TDADVDGAHI+TLLLTFF+RY + L + G +YV PPLY ++RG K ++YC
Sbjct: 492 LRYGKIIIMTDADVDGAHIQTLLLTFFFRYLRPLIEGGHVYVAQPPLYGIKRGSKVIRYC 551
Query: 417 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
Y D ELK+V + Y I R+KGLGEM QLWETT+NPE R+L ++ IEDA EA+
Sbjct: 552 YSDDELKRVMDDLGRDNKYKIGRYKGLGEMNADQLWETTMNPEHRILLRVGIEDAQEADE 611
Query: 477 VFSSLMGARVDTRKELIQ-NAANLVNLD 503
VF+ LMG+ V R+E IQ NA N+D
Sbjct: 612 VFTMLMGSDVKPRREFIQENAVYAENID 639
>gi|410672047|ref|YP_006924418.1| DNA gyrase subunit B [Methanolobus psychrophilus R15]
gi|409171175|gb|AFV25050.1| DNA gyrase subunit B [Methanolobus psychrophilus R15]
Length = 634
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 243/504 (48%), Positives = 348/504 (69%), Gaps = 15/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RGKP ++ + + GT+I F PD +F T +F ++T+ R+RELAF
Sbjct: 142 YYQRYERGKP----HDDIMEIGESEGTGTKITFKPDPLIFETT-KFVYDTLVTRLRELAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN + I++ D E+ Q + + GG+ +V++LN + LH+ + F ++ +G +
Sbjct: 197 LNKGIKISI--SDLRIEQPQQEVFQYEGGIVSFVKYLNHSRNVLHESPIYFEREKEGTVV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+Y++ + +AN+I T +GGTH+ G KA+LTR N +++K K +D LS
Sbjct: 255 EIAMQY-TDSYAEYVYSFANNINTHEGGTHLVGFKAALTRVANDYIRQNKMAKGED-KLS 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT IISV++ P+FEGQTKT+LGN +V+ +V+ V E L+EY+E +P V ++I
Sbjct: 313 GEDIREGLTAIISVKITEPQFEGQTKTKLGNSDVKGIVESMVSEGLSEYMEENPKVANAI 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K+L A +A AAK+AR+L R+K+ L S+LPGKLADCS P EI++VEGDSAGGS
Sbjct: 373 LQKALDAQRAREAAKKARELTRRKNALDISTLPGKLADCSEKDPSLCEIYLVEGDSAGGS 432
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+RRFQAILP RGKILNVE+ A + KN E+ +LI A+G G+ G+D+ + RYH
Sbjct: 433 AKQGRNRRFQAILPFRGKILNVEKARLAKVLKNNEVLSLITAMGTGI-GDDYNLDKARYH 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTL+LT F+R+ K L D G IY+ PPLY+V +GK Y Y D E
Sbjct: 492 KVIIMTDADVDGAHIRTLILTLFFRHMKPLIDAGYIYIAQPPLYRVAKGKAEYYVYSDRE 551
Query: 422 LK-KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L+ K++ N IQR+KGLGEM P QLWETT+NPE R L ++ ++DA A+ +FS
Sbjct: 552 LQAKLQELGDKNV--GIQRYKGLGEMNPEQLWETTMNPETRTLLRVTMDDAIAADEMFSI 609
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG V+ R+ I +A ++VNLD
Sbjct: 610 LMGDEVEPRRNFITTHARDVVNLD 633
>gi|333922243|ref|YP_004495823.1| DNA gyrase subunit B [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333747804|gb|AEF92911.1| DNA gyrase, B subunit [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 636
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 251/506 (49%), Positives = 343/506 (67%), Gaps = 18/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ YSRG PV+ L + GT++ F PD ++F F T+A R+RELA+
Sbjct: 143 YHQAYSRGVPVSELKI----IGKSKSTGTKVTFKPDPEIFEET-TFSLETLAQRLRELAY 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I ++ E DP Q + F GG+ ++V+ LN +K+ LH V G ++
Sbjct: 198 LNKGVKITIKDERKDPPVEQ--TFQFDGGIRDFVKHLNRNKQVLHSKPIYVTGEKEQ--- 252
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++ALQ+ +D Y++ +L +AN+I T+DGGTH G K +LTR +N G+ +K+ D
Sbjct: 253 IIVEIALQY-NDTYNENILSFANNIHTVDGGTHEIGFKTALTRVVNDYGRNHNLLKNNDP 311
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSGE +REG T +ISV+V P+FEGQTKT+LGN EVR +VD + L YLE +P V
Sbjct: 312 NLSGEDIREGATVVISVKVREPQFEGQTKTKLGNSEVRGIVDSIFADGLATYLEENPTVG 371
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K+++A +A AA++AR+L R+KS L + SLPGKLADCS P SE+++VEGDSA
Sbjct: 372 KRIIEKAITAARAREAARKARELTRRKSALDTMSLPGKLADCSEKDPSVSELYLVEGDSA 431
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRRFQAILPLRGKILNVE+ + NEEI+ +I ALG G+ G+DF
Sbjct: 432 GGSAKQGRDRRFQAILPLRGKILNVEKARMDKILANEEIRAMITALGCGI-GQDFDISKA 490
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHKIII+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPL++V +GK Y Y
Sbjct: 491 RYHKIIIMTDADVDGAHIRTLLLTFFYRHMRPLIEAGYVYIAQPPLFRVRKGKLDSYVYS 550
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D EL+++ + + +IQR+KGLGEM P QLWETT++P+ R + Q+ +EDA EA+ F
Sbjct: 551 DHELEELLKRVGYDNV-NIQRYKGLGEMNPEQLWETTMDPDTRTVLQVTLEDAIEADATF 609
Query: 479 SSLMGARVDTRKELIQ-NAANLVNLD 503
S LMG RV+ R++ IQ NA + NLD
Sbjct: 610 SMLMGDRVEPRRDFIQENAQYVRNLD 635
>gi|297582344|ref|YP_003698124.1| DNA gyrase subunit B [Bacillus selenitireducens MLS10]
gi|297140801|gb|ADH97558.1| DNA gyrase, B subunit [Bacillus selenitireducens MLS10]
Length = 637
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 231/483 (47%), Positives = 331/483 (68%), Gaps = 7/483 (1%)
Query: 23 VDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQ 82
+ S ++ GT IRF D +FT +D + +A R+REL+FLN LTI + + E+++
Sbjct: 159 IGSTEKTGTLIRFKADNMIFTETTVYDFDVLANRLRELSFLNKGLTIEITDKR---EEDK 215
Query: 83 YNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITIDLALQWCSDAYSDTMLGYAN 141
+YF+ GG+ +V+ LN K LH+ F + +GI +++A+Q+ +D+++ + +AN
Sbjct: 216 SAKYFYEGGISSFVEHLNRTKTALHEPPIFIESEKEGIQVEVAMQY-NDSFASNLYSFAN 274
Query: 142 SIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPE 201
+I T +GGTH G K +LTR +N +K+ K+ D +L G+ VREGLT I+SV++ NP+
Sbjct: 275 NINTHEGGTHESGFKTALTRVINDYARKNGLFKENDPNLIGDDVREGLTAIVSVKIENPQ 334
Query: 202 FEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 261
FEGQTKT+LGN E R + D E++ +++ +P V I+ K + A +A AAK+AR+L
Sbjct: 335 FEGQTKTKLGNSEARTITDSLFTEHMAKFMAENPTVARQIVEKGIMASRARDAAKKAREL 394
Query: 262 VRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKIL 321
R+KS L SSLPGKLADCS+ SEI++VEGDSAGGSAKQGRDR FQAILPLRGKI+
Sbjct: 395 TRRKSALEVSSLPGKLADCSTKDASISEIYVVEGDSAGGSAKQGRDRHFQAILPLRGKII 454
Query: 322 NVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLL 381
NVE+ + N EI+ +I ALG G+ GE+F RYHKIII+TDADVDGAHIRTLLL
Sbjct: 455 NVEKARLDKILANNEIRAIITALGTGI-GEEFDITKARYHKIIIMTDADVDGAHIRTLLL 513
Query: 382 TFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFK 441
TF YRY + L +EG IY+ PPLY++++GK V Y +++ E++++ ++ +QR+K
Sbjct: 514 TFLYRYMRPLIEEGYIYIAQPPLYQIKQGKAVHYAFNEKEMERILGELSASPKPGLQRYK 573
Query: 442 GLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV- 500
GLGEM P QLWETT++P R L Q+ ++DA A+ VF +LMG RV+ R++ IQ A+ V
Sbjct: 574 GLGEMNPTQLWETTMDPATRTLLQVSLKDAMLADEVFETLMGDRVEPRRDFIQENAHYVK 633
Query: 501 NLD 503
NLD
Sbjct: 634 NLD 636
>gi|402814456|ref|ZP_10864050.1| DNA gyrase subunit B [Paenibacillus alvei DSM 29]
gi|402508303|gb|EJW18824.1| DNA gyrase subunit B [Paenibacillus alvei DSM 29]
Length = 636
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 246/503 (48%), Positives = 337/503 (66%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG P L + + GT IRF PD +VFT ++D++T+ RIRELAF
Sbjct: 143 HQQEYRRGVPQADLEI----IGDTEETGTTIRFQPDPEVFTETTEYDYDTLLSRIRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN + + L +D Q + + GG++E+V++LN +++ +H+ + D IT
Sbjct: 199 LNKGIQMVL----TDERTGQSETFKYDGGIKEFVEYLNRNREKMHEQPIYVEGSKDYITC 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y++ + +AN+I T +GGTH G K++LTR +N +K +KD + +LS
Sbjct: 255 EVALQY-NDSYTENIYSFANNIHTHEGGTHESGFKSALTRIINDYARKMNLMKDNNSNLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IISV++P P+FEGQTKT+LGN EVR +V+ E E+L +P V I
Sbjct: 314 GDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRSIVESVFSEKFMEFLNENPMVSKKI 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A AA+RAR+L R+KS L SSLPGKLADCSS E+FIVEGDSAGGS
Sbjct: 374 VEKGMQASRAREAARRARELTRRKSALEVSSLPGKLADCSSKDAAHCELFIVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPL+GKILNVE+ + N EI+ +I ALG G+ GEDF E RYH
Sbjct: 434 AKQGRDRHFQAILPLKGKILNVEKSRLDKILSNAEIRAIITALGTGI-GEDFDLEKARYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLYK+ER K V+Y D +
Sbjct: 493 KIVIMTDADVDGAHIRTLLLTFFYRYMRKLIEAGYVYIAQPPLYKIERNKIVRYADSDKQ 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
++ + F A ++QR+KGLGEM QLWETT++PE R + Q+ +DA A+ VF +L
Sbjct: 553 KDEIIAEFGEGAKVNVQRYKGLGEMNAEQLWETTMDPESRKMLQVSFDDAKMADDVFDTL 612
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG V+ R++ IQ A V NLD
Sbjct: 613 MGDNVEPRRDFIQRHAKFVKNLD 635
>gi|375360696|ref|YP_005128735.1| DNA topoisomerase IV subunit B [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|371566690|emb|CCF03540.1| DNA topoisomerase IV subunit B [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
Length = 640
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 337/503 (66%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q Y RG PV L + D+ GT F PD ++F +D++ ++ R+RELAF
Sbjct: 145 HYQAYERGVPVADLEV----IGETDKTGTITHFVPDPEIFKETTVYDYDLLSNRVRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 201 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N ++ K+ D +LS
Sbjct: 259 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLS 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D L +L +PD I
Sbjct: 318 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLLENPDSARKI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 378 VEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 438 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D +
Sbjct: 497 KVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRVEYAYNDKQ 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ P + +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 557 LDELLKELPQSPKPGLQRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEML 616
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 617 MGDKVEPRRNFIEANARYVKNLD 639
>gi|168335262|ref|ZP_02693363.1| DNA gyrase subunit B [Epulopiscium sp. 'N.t. morphotype B']
Length = 635
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 239/504 (47%), Positives = 339/504 (67%), Gaps = 13/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QK+ +G V +L P+ + D+ GT + F PD+ +F + +D + R +E AF
Sbjct: 141 YEQKFKKGHVVESLH----PIGTTDQTGTFVHFLPDETIFEETV-YDFAILKKRFQETAF 195
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITI 121
L L I L E +P+ + + + GG+ E+V +LN +K P+++ + + + D ++I
Sbjct: 196 LTKGLKIKLIDERVEPKLEKI--FHYEGGVSEFVLFLNKNKTPIYENIFYCEGEKDDVSI 253
Query: 122 DLALQWC-SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
++A +C +D Y++ + +AN+I TI+GGTH+ G K +LT+T+N KK K +KD D SL
Sbjct: 254 EVA--FCHNDGYNENIFSFANNINTIEGGTHLSGFKNALTKTVNDYAKKMKILKDNDKSL 311
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGE +REG+T +IS+++ P+FEGQTKT+L N VR +VD V E +LE +P +
Sbjct: 312 SGEDIREGITGVISIKISEPKFEGQTKTKLVNTNVRTIVDNIVSEKFMIFLEQNPTIAKI 371
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K+ A A AA++ARDL R+K+VL +S+LPGKLADCS P++ EI+IVEGDSAGG
Sbjct: 372 IIQKATMASHARDAARKARDLTRRKNVLENSTLPGKLADCSERDPKKCEIYIVEGDSAGG 431
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK R R+ QAILPLRGKILNVE+ M +EEI+N+I A G G+ ED E LRY
Sbjct: 432 SAKSARSRQNQAILPLRGKILNVEKARLDKMLASEEIRNMITAFGAGI-NEDLNIEKLRY 490
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKII++TDADVDGAHIRTLLLTFFYR+ + L G IY+ PPLY VE+ K+ Y Y+D
Sbjct: 491 HKIILMTDADVDGAHIRTLLLTFFYRFYRELITGGFIYIAQPPLYLVEKNKKKHYAYNDR 550
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+ + + N + +QR+KGLGEM P QLW+TT+NP R L ++ IEDA EA+ +F++
Sbjct: 551 ELELILTEIGRNGITRMQRYKGLGEMNPDQLWDTTMNPATRTLVKVNIEDAVEADEIFTA 610
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG +V+ R+E I+ A LV NLD
Sbjct: 611 LMGDKVEPRREFIKEYAKLVKNLD 634
>gi|329770365|ref|ZP_08261747.1| DNA gyrase subunit B [Gemella sanguinis M325]
gi|328836488|gb|EGF86148.1| DNA gyrase subunit B [Gemella sanguinis M325]
Length = 638
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 230/498 (46%), Positives = 343/498 (68%), Gaps = 10/498 (2%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
+ RG V +T + D+ GT IRF D ++F ++++ + RIRELAFLN
Sbjct: 149 FERGDVVQGITV----IGETDKTGTTIRFKADPEIFQETTVYEYDILRTRIRELAFLNKG 204
Query: 67 LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQ 126
+TI L+ E EK + + + GGL EYV+ LN +K LH+ + +++G +++++Q
Sbjct: 205 ITIILKDEREGQEKEE--TFCYEGGLLEYVEMLNENKDSLHEAIYVHGEMEGKEVEISMQ 262
Query: 127 WCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVR 186
+ + Y+ +L YAN+I T +GGTH G K +LTR +NS GKK+K +K+K+ SL+G+ VR
Sbjct: 263 YNT-GYASNILSYANNINTHEGGTHESGFKTALTRIINSYGKKNKLIKEKE-SLTGDDVR 320
Query: 187 EGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSL 246
EGL IIS++ PNP+FEGQTKT+LGN E+ + ++ E L +L +P V I+ K L
Sbjct: 321 EGLVAIISIKHPNPQFEGQTKTKLGNSEMSTITNKLFSEELDRFLLENPKVAKIIVEKGL 380
Query: 247 SALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGR 306
A +A +AAK+AR+ R+K+ L ++LPGKLADCSS E E+F+VEGDSAGGSAK GR
Sbjct: 381 QASRARIAAKKARESTRRKNALEFTNLPGKLADCSSKDAAECELFLVEGDSAGGSAKLGR 440
Query: 307 DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIIL 366
+ +FQAILPL+GKILNVE+ + N+E+++LI A+G+G+ GE + LRYHKI+I+
Sbjct: 441 NSKFQAILPLKGKILNVEKVRIDKVLSNDEVRSLITAVGMGI-GETLNIDKLRYHKIVIM 499
Query: 367 TDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVK 426
TDADVDG+HIRTLLLTFF+RY + L + G +Y+ PPL+ ++ GK+ YC+ D ELK+
Sbjct: 500 TDADVDGSHIRTLLLTFFFRYMRELIEAGYVYIARPPLFGLKVGKKEYYCHTDEELKENI 559
Query: 427 SSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARV 486
+ ++ Y++QR+KGLGEM +LW+TT++PE R++ ++ I+DA A+ F +LMG +V
Sbjct: 560 EKYAADKKYTVQRYKGLGEMNAEELWDTTMDPEHRLMYKVSIDDAQRADAAFDTLMGEKV 619
Query: 487 DTRKELI-QNAANLVNLD 503
+ R++ I +NA N+VNLD
Sbjct: 620 EPRRKFIEENALNVVNLD 637
>gi|308171897|ref|YP_003918602.1| DNA gyrase subunit B [Bacillus amyloliquefaciens DSM 7]
gi|384162410|ref|YP_005543789.1| DNA gyrase subunit B [Bacillus amyloliquefaciens LL3]
gi|384166630|ref|YP_005548008.1| DNA gyrase subunit B [Bacillus amyloliquefaciens XH7]
gi|307604761|emb|CBI41132.1| DNA gyrase (subunit B) [Bacillus amyloliquefaciens DSM 7]
gi|328909965|gb|AEB61561.1| DNA gyrase (subunit B) [Bacillus amyloliquefaciens LL3]
gi|341825909|gb|AEK87160.1| DNA gyrase subunit B [Bacillus amyloliquefaciens XH7]
Length = 640
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 337/503 (66%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q Y RG PV L + D+ GT F PD ++F +D++ ++ R+RELAF
Sbjct: 145 HYQAYERGVPVADLEV----IGDTDKTGTITHFVPDPEIFKETTVYDYDLLSNRVRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 201 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVIHEEPIYIEGEKDGITV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N ++ K+ D +LS
Sbjct: 259 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLS 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D L +L +PD I
Sbjct: 318 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLLENPDSARKI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 378 VEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 438 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D +
Sbjct: 497 KVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRVEYAYNDKQ 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ P + +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 557 LDELLKELPQSPKPGLQRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEML 616
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 617 MGDKVEPRRNFIEANARYVKNLD 639
>gi|299820837|ref|ZP_07052726.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM
20601]
gi|299817858|gb|EFI85093.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM
20601]
Length = 646
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 248/507 (48%), Positives = 339/507 (66%), Gaps = 16/507 (3%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y+Q++ +G V + D +GT + F PD ++FT FD +T+ R RELA
Sbjct: 150 KYYQRFEQGNVVMDMEER----GETDYRGTIVHFKPDPEIFTETTVFDFDTLRTRARELA 205
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVD 117
FLN L I++ ED E +Y + GG+ YV+ LN K+ +H+ + G R+D
Sbjct: 206 FLNKNLRISI--EDKREEHQVRKDYHYEGGIRSYVEHLNKSKEVIHEPPIYLEGERED-- 261
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
I +++++Q+ + ++ ++ +AN+I T +GGTH G K +LTR +N +++K KD D
Sbjct: 262 -IMVEISMQYNT-GFASNLISFANNIHTYEGGTHESGFKTALTRVINDYARRNKLFKDSD 319
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+LSGE VREGLT IIS++ PNP+FEGQTKT+LGN E R + D+ E L +++ +PDV
Sbjct: 320 DNLSGEDVREGLTAIISIKHPNPQFEGQTKTKLGNSEARTITDKLFSEALNKFMMENPDV 379
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K + A +A +AAKRARD+ R+ S L S+LPGKLADCSS PE SE++IVEGDS
Sbjct: 380 GKKIVEKGVVASRARMAAKRARDVARKTSGLEISNLPGKLADCSSRNPEISELYIVEGDS 439
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDR FQAILP+RGKILNVE+ + NEEI+ + A+G G G DF
Sbjct: 440 AGGSAKQGRDRLFQAILPIRGKILNVEKARLDKILANEEIRTIFTAMGTGFGG-DFNVAK 498
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
RYHK+II+TDADVDGAHIRTLLLT FYRY + L D G IY+ PPLY+++ GK+V+Y Y
Sbjct: 499 ARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKEVEYVY 558
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
D +L +S S+ Y+IQR+KGLGEM P QLWETT+NPE R L Q+ I DA +A+
Sbjct: 559 TDKQLDDYLASIGSDTKYAIQRYKGLGEMNPEQLWETTMNPEHRTLLQVNINDAIDADET 618
Query: 478 FSSLMGARVDTRKELI-QNAANLVNLD 503
F LMG RV+ R++ I +NA + NLD
Sbjct: 619 FEMLMGDRVEPRRKFIEENAQYVKNLD 645
>gi|373494049|ref|ZP_09584655.1| DNA gyrase subunit B [Eubacterium infirmum F0142]
gi|371969183|gb|EHO86634.1| DNA gyrase subunit B [Eubacterium infirmum F0142]
Length = 641
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/504 (48%), Positives = 342/504 (67%), Gaps = 12/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK VT L + G++ FWPD ++F T I+FD++T+ R RE+AF
Sbjct: 146 YRQEYKRGKTVTPLEV----IGESKSTGSKTTFWPDAEIFET-IEFDYDTLQHRFREMAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFR-KDVDGIT 120
LN + I++ E P+K + + + GGL+EYV ++N +K+ LH +V+ F ++ + +
Sbjct: 201 LNKGIKISITDERDTPKKKEV--FHYEGGLKEYVHYINQNKEVLHKEVIYFEVENKNSME 258
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++ALQ+ +D Y++ +L YAN+I T DGGTH+ G+K++LTR +N KKSK +KD D +L
Sbjct: 259 VEVALQY-TDRYNEFILSYANNINTTDGGTHMAGLKSALTRAINDYAKKSKILKDSDPAL 317
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGE +REG+T I+SV++ P+FEGQTK +LGN EVR V+ + + LT YLE HP
Sbjct: 318 SGEDIREGITAIVSVKLAQPQFEGQTKAKLGNSEVRGFVETATNDNLTAYLEEHPQEAKI 377
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K + A +A AA++ARD+ R+K+ L S+SLPGKLADCS P SEIF+VEGDSAGG
Sbjct: 378 IIEKCIRASRAREAARKARDITRRKNALDSTSLPGKLADCSEKDPALSEIFLVEGDSAGG 437
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR QA+LPLRGKILNVE+ + +EEI+N+I A G GV G DF LRY
Sbjct: 438 SAKQGRDRSRQAVLPLRGKILNVEKARLDKILNSEEIKNMITAFGCGV-GNDFDASKLRY 496
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIII+TDADVDGAHIRTLLLTFF+R+ L + G +Y PPL+ ++GK V Y Y +
Sbjct: 497 HKIIIMTDADVDGAHIRTLLLTFFFRHMTPLIEGGYVYAAKPPLFMTKQGKDVYYTYSEP 556
Query: 421 ELKKVKSSFPSNAL-YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
E K+ + IQR+KGLGEM QLWETT++ R L Q+ ++DA++A+ +F+
Sbjct: 557 EQDKLLAELSGKKTKIDIQRYKGLGEMDFHQLWETTMDFNNRTLVQITMDDASQADEIFT 616
Query: 480 SLMGARVDTRKELIQNAANLVNLD 503
LMG +V RK+ I++ A +D
Sbjct: 617 ILMGDKVPPRKKFIEDNAKYAEID 640
>gi|302870737|ref|YP_003839373.1| DNA gyrase subunit B [Caldicellulosiruptor obsidiansis OB47]
gi|302573596|gb|ADL41387.1| DNA gyrase, B subunit [Caldicellulosiruptor obsidiansis OB47]
Length = 638
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/507 (47%), Positives = 349/507 (68%), Gaps = 22/507 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y +GKPV C + + + D+ GT++ F PD ++F T I+FD + I R+RELAF
Sbjct: 147 YYQRYEKGKPV----CELKVIGTTDKTGTKVTFLPDDEIFET-IEFDGDVILQRLRELAF 201
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDG 118
LN + I R+++ P + +Y+ GG+ E+V++LN +K+ LH + + + +
Sbjct: 202 LNKGIRIVFLDEREKNPKPVELKYD-----GGIAEFVKFLNRNKEVLHQEPIYIEGEKND 256
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I I++A+Q+ D + + + +AN+I TIDGGTH+ G K ++T+ +N KK +K D
Sbjct: 257 ILIEVAVQYTDD-FGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEYAKKYNFIKG-DT 314
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
L GE +R+G+T I+SV++ P+FEGQTKT+LGN E R V+ V E L +LE +PDV
Sbjct: 315 QLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSEKLATFLEENPDVS 374
Query: 239 DSILSKSLSALKAALAAKRARDLV-RQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K++ A KA AK+AR+LV ++KS L SS+LPGKLADCS P + EIFIVEGDS
Sbjct: 375 KKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDPAKCEIFIVEGDS 434
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRR+QAILPL GK+LNVE+ + +Y N+++ LI+ALG+G+ G D +
Sbjct: 435 AGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALGVGI-GNDIDLKK 493
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHK+II+ DADVDG+HIRTLLLTFFYRY + L + G IY+ PPLYK+ +GKQV+Y Y
Sbjct: 494 LRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLYKITKGKQVRYAY 553
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ EL+K+ +QRFKGLGEM +LWETT++P +R+L ++ +EDA A +
Sbjct: 554 NEKELQKILQEMKDA---QVQRFKGLGEMNAQELWETTMDPARRILLRVELEDAVMAEEI 610
Query: 478 FSSLMGARVDTRKELIQ-NAANLVNLD 503
F+ LMG +V+ R+E I+ NA + NLD
Sbjct: 611 FTILMGDKVEPRREFIEKNAKYVRNLD 637
>gi|384157618|ref|YP_005539691.1| DNA gyrase subunit B [Bacillus amyloliquefaciens TA208]
gi|328551706|gb|AEB22198.1| DNA gyrase subunit B [Bacillus amyloliquefaciens TA208]
Length = 638
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 337/503 (66%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q Y RG PV L + D+ GT F PD ++F +D++ ++ R+RELAF
Sbjct: 143 HYQAYERGVPVADLEV----IGDTDKTGTITHFVPDPEIFKETTVYDYDLLSNRVRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 199 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVIHEEPIYIEGEKDGITV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N ++ K+ D +LS
Sbjct: 257 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D L +L +PD I
Sbjct: 316 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLLENPDSARKI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 376 VEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 436 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D +
Sbjct: 495 KVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRVEYAYNDKQ 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ P + +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 555 LDELLKELPQSPKPGLQRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEML 614
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 615 MGDKVEPRRNFIEANARYVKNLD 637
>gi|298675298|ref|YP_003727048.1| DNA gyrase subunit B [Methanohalobium evestigatum Z-7303]
gi|298288286|gb|ADI74252.1| DNA gyrase, B subunit [Methanohalobium evestigatum Z-7303]
Length = 634
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/503 (48%), Positives = 350/503 (69%), Gaps = 13/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q Y +G P T + + + GT+ F PD ++F + +FD+++++ R+RELAF
Sbjct: 142 YYQHYEKGYPKTEVQV----LGESEGNGTKFTFKPDSEIFEST-EFDYDSLSTRLRELAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I ++ E S E+ Q + + + GG+ +V+ LN ++ P+H+ + F + DG +
Sbjct: 197 LNKGIKITIKDERS--EEGQEDVFQYDGGIVSFVKHLNKNRSPIHEEPIYFEGESDGTIV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+++LQ+ +D+Y + + +AN+I T +GGTH+ G K +LTR N +K++ ++ ++ L+
Sbjct: 255 EISLQY-TDSYGEYVYSFANNINTHEGGTHVIGFKTALTRVANDYIRKNE-IEKGNVRLT 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT IIS ++P+P+FEGQTKTRLGN +V+ VV+ V E L+ YLE +P + +SI
Sbjct: 313 GEDIREGLTAIISAKIPDPQFEGQTKTRLGNSDVKGVVESLVTEELSRYLEENPKIANSI 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+LSA +A AAKRAR+L R+KS L S+LPGKLADCS T P SEIF+VEGDSAGGS
Sbjct: 373 IKKALSAKRAREAAKRARELTRRKSALEVSTLPGKLADCSETDPSVSEIFLVEGDSAGGS 432
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDRRFQAILP RGKI+NVE+ + + KN EI +LI A+G G+ GEDF RYH
Sbjct: 433 AKMGRDRRFQAILPFRGKIINVEKARLSKVLKNNEILSLITAMGTGI-GEDFDINKARYH 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTL+LTFF+RY + D G +Y+ PPLY++++GK+ Y + + E
Sbjct: 492 KVIIMTDADVDGAHIRTLILTFFFRYMNEMVDNGYVYIAQPPLYRIKKGKKEFYIHTEKE 551
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
K K SIQR+KGLGEM P QLW TT+NPE R L Q+ +EDAA A+ +FS L
Sbjct: 552 -KNAKLKELGEKGVSIQRYKGLGEMNPEQLWATTMNPESRKLTQVTMEDAAAADEMFSIL 610
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG V+ R++ I+ +A +VNLD
Sbjct: 611 MGEEVEPRRQFIEKHATEVVNLD 633
>gi|384263637|ref|YP_005419344.1| DNA topoisomerase IV subunit B [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|452854068|ref|YP_007495751.1| DNA gyrase (subunit B) [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|380496990|emb|CCG48028.1| DNA topoisomerase IV subunit B [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|452078328|emb|CCP20078.1| DNA gyrase (subunit B) [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 640
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 337/503 (66%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q Y RG PV L + D+ GT F PD ++F +D++ ++ R+RELAF
Sbjct: 145 HYQAYERGVPVADLEV----IGDTDKTGTITHFVPDPEIFKETTVYDYDLLSNRVRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 201 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N ++ K+ D +LS
Sbjct: 259 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLS 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D L +L +PD I
Sbjct: 318 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLLENPDSARKI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 378 VEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 438 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D +
Sbjct: 497 KVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRVEYAYNDKQ 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ P + +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 557 LDELLKELPQSPKPGLQRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEML 616
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 617 MGDKVEPRRNFIEANARYVKNLD 639
>gi|21228521|ref|NP_634443.1| DNA gyrase subunit B [Methanosarcina mazei Go1]
gi|20907008|gb|AAM32115.1| DNA gyrase, subunit B [Methanosarcina mazei Go1]
Length = 634
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 254/504 (50%), Positives = 341/504 (67%), Gaps = 13/504 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y Q+Y RGKP V + + D GT+ F PD ++F T F ++ + R+RELA
Sbjct: 141 KYFQRYIRGKP----ESDVREIGTSDTTGTKTTFKPDTKIFETT-DFQYDILLNRLRELA 195
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
FLN L I L K+ PE Q + ++GG+ E+V++LN K+PLH+ + F + D +
Sbjct: 196 FLNRGLIINL-KDLRSPE-GQAETFNYSGGIIEFVEYLNKKKQPLHEKPIYFERQRDDMV 253
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q+ ++ Y++ + +AN+I T +GGTHI G K +LTR N K +K K+ D L
Sbjct: 254 VEIAMQY-TNGYTENVYSFANNINTHEGGTHIIGFKTALTRVANDYIKANKLSKE-DEKL 311
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
+G+ VREGLT IISV++ P+FEGQTKT+LGN EV+ +VD V + L EY E +P V +
Sbjct: 312 TGDDVREGLTAIISVKLMEPQFEGQTKTKLGNSEVKGIVDSLVTDGLAEYFEENPKVANI 371
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
IL K+L A +A AAK+AR+L R+KS L S+LPGKLADCS+ P E EI+IVEGDSAGG
Sbjct: 372 ILDKALLAQRAREAAKKARELTRRKSALEVSTLPGKLADCSNKNPAECEIYIVEGDSAGG 431
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILPLRGKILNVE+ A + KN E+ +LI A+G GV EDF E RY
Sbjct: 432 SAKQGRDRSFQAILPLRGKILNVEKSRLAKILKNNEVISLITAIGTGVS-EDFDLENARY 490
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIII+TDADVDGAHIRTLLLT F+RY + L D G +Y+ PPLYK+++GK Y Y D
Sbjct: 491 HKIIIMTDADVDGAHIRTLLLTLFFRYMRHLIDAGYVYIAQPPLYKIKKGKMDYYAYSDK 550
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL + +IQR+KGLGEM P QLWETT++PE R L Q+ +EDA A+ +F
Sbjct: 551 ELADKLKELGEKGV-AIQRYKGLGEMNPGQLWETTMDPESRTLLQVTLEDAIRADEIFRV 609
Query: 481 LMGARVDTRKELIQ-NAANLVNLD 503
LMG V+ R+ I+ +A +V+LD
Sbjct: 610 LMGDEVEPRRNFIETHAKEVVDLD 633
>gi|429765449|ref|ZP_19297743.1| DNA gyrase, B subunit [Clostridium celatum DSM 1785]
gi|429186362|gb|EKY27309.1| DNA gyrase, B subunit [Clostridium celatum DSM 1785]
Length = 638
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 249/504 (49%), Positives = 351/504 (69%), Gaps = 13/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ QKYSRG + C + + D GT++ F PD ++F T +F+ ++ R+RELAF
Sbjct: 144 WQQKYSRG----NVLCDLTKIGEDDGHGTKVVFKPDHEIFETT-EFEFEILSSRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN + I L + E+ + +Y + GG++E+V +LN +K+ LH+ + + DGI
Sbjct: 199 LNKGICITLEDKRE--EEEKIEKYHYEGGIKEFVSYLNRNKEVLHESPIYVEGEKDGIIA 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D Y++ + +AN+I TI+GGTH+ G K++LTR +N K+ +K+ D +LS
Sbjct: 257 EIALQY-NDGYNENLYSFANNIDTIEGGTHLAGFKSALTRAINDYAKRFGHIKENDKNLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ REGLT +ISV++ P+FEGQTKT+LGN EVR VVD V E ++ +LE +P V I
Sbjct: 316 GDDAREGLTAVISVKISEPQFEGQTKTKLGNSEVRGVVDSIVAEGVSIFLEENPAVGKII 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AA++AR+L R KSVL S+LPGKLADCSS P E EI+IVEGDSAGGS
Sbjct: 376 IDKALMAARARDAARKARELTR-KSVLERSTLPGKLADCSSKDPAECEIYIVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQAILPLRGKILNVE++ + ++ I+++I A G G+ G+DF +E LRY+
Sbjct: 435 AKQGRDRKFQAILPLRGKILNVEKQRLDRILNSDTIRSMITAFGAGI-GKDFDEEKLRYN 493
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDADVDGAHIRTLLLTFFYRY + L D G +Y+ PPLYKV +GK+ Y Y D E
Sbjct: 494 RIIIMTDADVDGAHIRTLLLTFFYRYMRPLIDGGHVYIAQPPLYKVSKGKKESYAYTDEE 553
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L + F + +IQR+KGLGEM QLW+TT++PE R+LK+ + DA A+ +F+
Sbjct: 554 LDSILEEFGGKDNSTNIQRYKGLGEMNATQLWDTTMDPEHRILKKASVSDAIAADEIFTI 613
Query: 481 LMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+E IQ NA+ + NLD
Sbjct: 614 LMGDKVEPRREFIQKNASKISNLD 637
>gi|312897423|ref|ZP_07756847.1| DNA gyrase, B subunit [Megasphaera micronuciformis F0359]
gi|310621484|gb|EFQ05020.1| DNA gyrase, B subunit [Megasphaera micronuciformis F0359]
Length = 647
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 249/503 (49%), Positives = 350/503 (69%), Gaps = 19/503 (3%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
++RG V +L V P++ + +GT++ F PD ++F + +D T+ R+RELAFLN
Sbjct: 157 FARGLTVNSLE-KVRPLEEGEERGTKVWFKPDSEIFPDTV-YDFETLKIRLRELAFLNKG 214
Query: 67 LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVV----GFRKDVDGITID 122
LTI L +D ++ Y++ GGL +VQ+LN ++ P++ V G + DV +D
Sbjct: 215 LTITL----ADKRTDKKEIYYYEGGLTSFVQFLNENRTPVNQTVISLEGIKSDV---VVD 267
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+ALQ+ +D YS+ +L + N+I T +GGTH+ G ++ LTRT+N G+ S +K+ + +LSG
Sbjct: 268 IALQY-NDGYSENILTFVNNIFTEEGGTHLSGFRSGLTRTINDYGRSSGIIKENEDNLSG 326
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
E VREGLT IISV+V P+FEGQTKT+LGN EV+ +VD + + L E+ E HP SI+
Sbjct: 327 EDVREGLTAIISVKVREPQFEGQTKTKLGNSEVKGIVDNIISDGLKEFFEEHPAEAKSIV 386
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
+K+++A +A AA++AR+L R+K+ L SSLPGKLADCS P+ +EI++VEGDSAGGSA
Sbjct: 387 TKNINAARARQAARKARELTRRKNALEISSLPGKLADCSEKNPDMTEIYLVEGDSAGGSA 446
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQGRDR+FQAILPLRGKI+NVE+ + NEEI+ +I A G G+ GE+F RY K
Sbjct: 447 KQGRDRKFQAILPLRGKIINVEKARLDKILANEEIRAMITAFGTGI-GEEFDITKRRYDK 505
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
III+TDADVDGAHIRTLLLTFFYR+ K L EG +Y+ PPLY+V +G+ V Y Y D EL
Sbjct: 506 IIIMTDADVDGAHIRTLLLTFFYRFMKPLITEGHVYIAQPPLYQVRKGRSVWYLYTDDEL 565
Query: 423 -KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
K+ NA+ +QR+KGLGEM P QLWETT++P+ R + ++ +EDA EA+ +FS L
Sbjct: 566 TNKLAEVGNENAV--VQRYKGLGEMNPEQLWETTMDPQFRTMLKVELEDAVEADRIFSVL 623
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R++ IQ NA + NLD
Sbjct: 624 MGDKVEPRRKFIQDNAKKVRNLD 646
>gi|329925092|ref|ZP_08280036.1| DNA gyrase, B subunit [Paenibacillus sp. HGF5]
gi|328940211|gb|EGG36543.1| DNA gyrase, B subunit [Paenibacillus sp. HGF5]
Length = 634
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 248/504 (49%), Positives = 337/504 (66%), Gaps = 14/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG P + + D GT + F PD ++FT +D+ T+ RIRELAF
Sbjct: 141 YQQEYHRGVPQYDIKI----IGDSDDHGTTVTFLPDPEIFTETTVYDYTTLLTRIRELAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
LN + + L E + ++YF + GG+ EYV++LN K+ LH D + D I
Sbjct: 197 LNKGIALTLTDE-----RTGASDYFKYEGGIIEYVKFLNEKKEALHEDPIYVEGSRDNIQ 251
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
++++LQ+ +D+Y++ + +AN+I T +GGTH G K++LTR +N +K+ +KD + +L
Sbjct: 252 VEVSLQY-NDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYARKTGLIKDNNNNL 310
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ VREGLT IISV+VP P+FEGQTKT+LGN EVR +V+ E L E+L+ +P V
Sbjct: 311 SGDDVREGLTAIISVKVPEPQFEGQTKTKLGNSEVRGIVESLFAEKLQEFLQENPAVSRR 370
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
IL K+L A +A AA++AR++ R+KS L S+LPGKLADCSS SE++IVEGDSAGG
Sbjct: 371 ILEKALQASRAREAARKAREMTRRKSALEVSALPGKLADCSSKDASISELYIVEGDSAGG 430
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILPLRGKILNVE+ + N EI+ +I ALG G+ EDF RY
Sbjct: 431 SAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIITALGTGI-AEDFDLSKARY 489
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIII+TDADVDGAHIRTLLLTFFYRY + L + G IY+ PPL+K+ER K ++Y +
Sbjct: 490 HKIIIMTDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPPLFKIERNKVIRYAGSER 549
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
E ++ F N ++QR+KGLGEM QLWETT++PE R + Q+ IEDA A+ +F +
Sbjct: 550 ERDEIIKEFGENVKINVQRYKGLGEMNAGQLWETTMDPESRTMLQVTIEDAILADTLFDT 609
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG V+ R++ IQ A V NLD
Sbjct: 610 LMGDNVEPRRDFIQEHAKSVRNLD 633
>gi|387896530|ref|YP_006326826.1| DNA gyrase subunit B [Bacillus amyloliquefaciens Y2]
gi|429503537|ref|YP_007184721.1| DNA gyrase subunit B [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|387170640|gb|AFJ60101.1| DNA gyrase subunit B [Bacillus amyloliquefaciens Y2]
gi|429485127|gb|AFZ89051.1| DNA gyrase subunit B [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 638
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 337/503 (66%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q Y RG PV L + D+ GT F PD ++F +D++ ++ R+RELAF
Sbjct: 143 HYQAYERGVPVADLEV----IGDTDKTGTITHFVPDPEIFKETTVYDYDLLSNRVRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 199 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N ++ K+ D +LS
Sbjct: 257 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D L +L +PD I
Sbjct: 316 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLLENPDSARKI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 376 VEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 436 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D +
Sbjct: 495 KVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRVEYAYNDKQ 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ P + +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 555 LDELLKELPQSPKPGLQRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEML 614
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 615 MGDKVEPRRNFIEANARYVKNLD 637
>gi|421729501|ref|ZP_16168631.1| DNA gyrase subunit B [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|451348605|ref|YP_007447236.1| DNA gyrase subunit B [Bacillus amyloliquefaciens IT-45]
gi|407076471|gb|EKE49454.1| DNA gyrase subunit B [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|449852363|gb|AGF29355.1| DNA gyrase subunit B [Bacillus amyloliquefaciens IT-45]
Length = 638
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 337/503 (66%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q Y RG PV L + D+ GT F PD ++F +D++ ++ R+RELAF
Sbjct: 143 HYQAYERGVPVADLEV----IGETDKTGTITHFVPDPEIFKETTVYDYDLLSNRVRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 199 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N ++ K+ D +LS
Sbjct: 257 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D L +L +PD I
Sbjct: 316 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLLENPDSARKI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 376 VEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 436 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D +
Sbjct: 495 KVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRVEYAYNDKQ 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ P + +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 555 LDELLKELPQSPKPGLQRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEML 614
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 615 MGDKVEPRRNFIEANARYVKNLD 637
>gi|406829974|gb|AFS63977.1| DNA gyrase subunit B [Cloacibacillus sp. CL-84]
Length = 647
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 234/504 (46%), Positives = 346/504 (68%), Gaps = 12/504 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E+HQ+Y RG P+T L + +GTR++F PD ++F+T +F + + R+RELA
Sbjct: 153 EHHQRYERGIPMTQLEV----TGDTELRGTRVQFMPDDEIFSTT-EFQADILKQRLRELA 207
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGIT 120
FLN +TI ED EK + Y + GG+ +V++LN K+ L + V + D
Sbjct: 208 FLNSHITINF--EDQRSEKPEKKSYHYPGGISAFVEYLNKGKEVLFKEPVVINGEKDKTQ 265
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q+ +D Y + + G+ N I TI+GGTH+ G ++++TR +N +K K +K+KD +L
Sbjct: 266 LEVAIQY-NDTYIERLFGFVNLINTIEGGTHVAGFRSAMTRAINDEARKLKILKEKDANL 324
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ ++EGLT +ISV+V P+FEGQTKT+LGN +V+ +VD V E L L+ P++L
Sbjct: 325 SGDDLKEGLTAVISVKVMEPQFEGQTKTKLGNNDVKGIVDSIVYEGLKNALDERPEILKP 384
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ +L A +A AAK+A++LVR+KSV+ +LPGKL+DCS+ P + EI+IVEGDSAGG
Sbjct: 385 IVESALRARQAREAAKKAKELVRRKSVMSGLTLPGKLSDCSNRNPADCEIYIVEGDSAGG 444
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGR+R FQAILPLRGKILNVE+ + +E I+N+I ALG GV G+DF ++ LRY
Sbjct: 445 SAKQGRNREFQAILPLRGKILNVEKARLEKILSSETIRNIILALGCGV-GDDFNEDKLRY 503
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKI I+ DADVDGAHIRTLLLT F+RY + ++G +YV PPL++V+ GK++ YC+ +
Sbjct: 504 HKIFIMADADVDGAHIRTLLLTLFFRYMPQIIEKGYLYVAQPPLFRVQCGKEITYCFSEK 563
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
E+K+ ++ + +QR+KGLGEM QLWETT+NPE R++ ++ ++DA EA+ +F
Sbjct: 564 EMKEAQNKANGKKV-EVQRYKGLGEMNAEQLWETTMNPEHRIINRVEVQDAVEADELFGI 622
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG V+ R++ I+ V NLD
Sbjct: 623 LMGDVVEPRRKFIEQYGKEVKNLD 646
>gi|344995338|ref|YP_004797681.1| DNA gyrase subunit B [Caldicellulosiruptor lactoaceticus 6A]
gi|343963557|gb|AEM72704.1| DNA gyrase, B subunit [Caldicellulosiruptor lactoaceticus 6A]
Length = 637
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/507 (47%), Positives = 348/507 (68%), Gaps = 22/507 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RGKP TC + + + GT++ F PD ++F T I+FD + I R+RELAF
Sbjct: 146 YYQRYERGKP----TCELKVIGETNSTGTKVTFLPDDEIFET-IEFDGDVILQRLRELAF 200
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDG 118
LN + I R++++ P + +Y+ GG+ E+V++LN +K+ LH + + + +
Sbjct: 201 LNKGIRIVFVDEREKNAKPIELKYD-----GGIAEFVKFLNRNKEVLHQEPIYIEGEKND 255
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I I++A+Q+ D + + + +AN+I TIDGGTH+ G K ++T+ +N KK +K D
Sbjct: 256 ILIEVAIQYTED-FGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEYAKKYNFIKG-DT 313
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
L GE +R+G+T I+SV++ P+FEGQTKT+LGN E R V+ V E L +LE +PDV
Sbjct: 314 QLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSEKLAAFLEENPDVS 373
Query: 239 DSILSKSLSALKAALAAKRARDLV-RQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K++ A KA AK+AR+LV ++KS L SS+LPGKLADCS P + EIFIVEGDS
Sbjct: 374 KKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDPAKCEIFIVEGDS 433
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRR+QAILPL GK+LNVE+ + +Y N+++ LI+ALG+G+ G D +
Sbjct: 434 AGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALGVGI-GNDIDLKK 492
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHKIII+ DADVDG+HIRTLLLTFFYRY + L + G IY+ PPLYK+ +GKQV+Y Y
Sbjct: 493 LRYHKIIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLYKITKGKQVRYAY 552
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ EL+++ +QRFKGLGEM +LWETT++P +R+L ++ +EDA A +
Sbjct: 553 NEKELQRILQEMKDA---QVQRFKGLGEMNAQELWETTMDPARRILLRVELEDAVMAEEI 609
Query: 478 FSSLMGARVDTRKELIQ-NAANLVNLD 503
F+ LMG +V+ R+E I+ NA + NLD
Sbjct: 610 FTILMGDKVEPRREFIEKNAKYVRNLD 636
>gi|410656647|ref|YP_006909018.1| DNA gyrase subunit B [Dehalobacter sp. DCA]
gi|410659625|ref|YP_006911996.1| DNA gyrase subunit B [Dehalobacter sp. CF]
gi|409019002|gb|AFV01033.1| DNA gyrase subunit B [Dehalobacter sp. DCA]
gi|409021981|gb|AFV04011.1| DNA gyrase subunit B [Dehalobacter sp. CF]
Length = 644
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 252/505 (49%), Positives = 348/505 (68%), Gaps = 15/505 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDS-KDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
+Y Q+YSRGK +T L + + + R GT I F PD ++F I +D+ +A R++EL
Sbjct: 151 KYSQEYSRGKTLTELK----EIGTYQGRSGTMITFQPDPEIFED-IVYDYEVLAHRLKEL 205
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
+FLN + I L E ++ K+ YN GL ++V++LN +K P+H + F + D
Sbjct: 206 SFLNKNVMITLIDERNEA-KDVYNH---NNGLIDFVEYLNKNKDPIHQKAIVFETEKDNT 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ +++Y++T+ YAN+I T +GGTH G KA+LTR +N +K+ +K + +
Sbjct: 262 KVEIALQY-NESYTETLFSYANNINTTEGGTHEAGFKAALTRVVNDYARKNNILKGNENN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSGE VREGLT IISV++ P+FEGQTKT+LGN EVR +VD V E LT + E +P V
Sbjct: 321 LSGEDVREGLTAIISVKIMEPQFEGQTKTKLGNSEVRSIVDSVVGEGLTTFFEENPAVAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K L A +A LAA++ARDL R+KS L S+SLPGKLADC+ P E++IVEGDSAG
Sbjct: 381 KIVEKGLQATRARLAARKARDLTRRKSALESTSLPGKLADCTWKDPRYCEMYIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGR+++FQAILPLRGKILNVE+ + N EI+ +I ALG G+ E+F E R
Sbjct: 441 GSAKQGRNQKFQAILPLRGKILNVEKARLDRILGNTEIRAMITALGTGIS-EEFDIEKAR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK++I+TDADVDGAHIR LLLTFFYRY K L + +Y+ PPL+KV+ GKQ+QY Y D
Sbjct: 500 YHKVVIMTDADVDGAHIRILLLTFFYRYMKPLIENHYVYIAQPPLFKVKNGKQIQYAYSD 559
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL KV + + IQR+KGLGEM P QLWETT++PE R + Q+ ++DA A+ +F+
Sbjct: 560 KELSKVMETVGRDKT-EIQRYKGLGEMNPEQLWETTMDPESRTILQVQMDDAMRADELFT 618
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ RKE IQ +A ++ NLD
Sbjct: 619 MLMGDKVEPRKEFIQKHARDVRNLD 643
>gi|359409915|ref|ZP_09202380.1| DNA gyrase, B subunit [Clostridium sp. DL-VIII]
gi|357168799|gb|EHI96973.1| DNA gyrase, B subunit [Clostridium sp. DL-VIII]
Length = 635
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 252/504 (50%), Positives = 349/504 (69%), Gaps = 15/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ QKYS+GK +T +T + + D GT F PD +F I FD ++ R+RELAF
Sbjct: 143 WEQKYSKGKVLTEVT----QIGNSDETGTETYFKPDAGIFD-EIVFDFEVLSQRLRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
LN + I L D EK + + + GG++ +V +LN +K PLHD + + V D I +
Sbjct: 198 LNKGIYIKLV--DKRDEKEEI--FHYEGGIKSFVSYLNRNKVPLHDEPIYIEGVKDNIAV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D Y++ + +AN+I T++GGTH+ G K +LTR N KK +K+ D + +
Sbjct: 254 EVALQY-NDGYTENIFSFANNIDTVEGGTHLVGFKTALTRVFNDYAKKFGHIKENDKNFT 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT +ISV++ P+FEGQTKT+LGN EVR +VD V E + +LE +P++ I
Sbjct: 313 GDDIREGLTAVISVKIEEPQFEGQTKTKLGNSEVRGIVDSVVGENVGTFLEENPNIGKMI 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AA++AR+L R KSVL ++LPGKLADCSS P E EI+IVEGDSAGGS
Sbjct: 373 VDKALMAARARDAARKARELTR-KSVLERTTLPGKLADCSSKDPRECEIYIVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+RRFQAILPLRGKILNVE++ + + I+++I A G G+ G DF E +RY+
Sbjct: 432 AKQGRNRRFQAILPLRGKILNVEKQRLDRILNADTIRSMITAFGAGI-GNDFAVEKIRYN 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDADVDGAHIRTLLLTFFYRY + L D+G +Y+ PPLYKV +GK+ Y Y DAE
Sbjct: 491 RIIIMTDADVDGAHIRTLLLTFFYRYMRELIDDGHVYIAQPPLYKVSKGKKEHYAYSDAE 550
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L+ V S F + IQR+KGLGEM QLW+TT++PE+R+L ++ I+DA A+ +F+
Sbjct: 551 LESVLSDFGGKDNSTDIQRYKGLGEMNANQLWDTTMDPEKRILLKVNIDDAMAADEIFTI 610
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ RKE I QNA +VNLD
Sbjct: 611 LMGEKVEPRKEFIQQNAKKVVNLD 634
>gi|326486756|gb|ADZ76421.1| DNA gyrase subunit B [Bacillus subtilis]
Length = 588
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 234/484 (48%), Positives = 328/484 (67%), Gaps = 9/484 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG PVT L + D GT F PD ++F+ ++D++ +A R+RELAF
Sbjct: 113 HRQTYKRGVPVTDLEI----IGETDHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELAF 168
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 169 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 226
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N +K +K+ D +LS
Sbjct: 227 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLS 285
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D + ++ +PD I
Sbjct: 286 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKI 345
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 346 VDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 405
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 406 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 464
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D E
Sbjct: 465 KVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKE 524
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ + P +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 525 LEELLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEML 584
Query: 482 MGAR 485
MG +
Sbjct: 585 MGDK 588
>gi|153085|gb|AAA73951.1| DNA gyrase B subunit [Staphylococcus aureus]
Length = 640
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 249/502 (49%), Positives = 335/502 (66%), Gaps = 10/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 147 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 203 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G S+ ++K S
Sbjct: 262 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSRYEEEK--IAS 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 319 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 379 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSQSPEECEIFLVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 439 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLL FFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 498 KIVIMTDADVDGAHIRTLLLIFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI +KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 558 LDKLKSELNPTPKWSIALYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 617
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 618 MGDVVENRRQFIEDNAVYANLD 639
>gi|355572977|ref|ZP_09043945.1| DNA gyrase, B subunit [Methanolinea tarda NOBI-1]
gi|354823989|gb|EHF08248.1| DNA gyrase, B subunit [Methanolinea tarda NOBI-1]
Length = 665
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/479 (50%), Positives = 341/479 (71%), Gaps = 14/479 (2%)
Query: 30 GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDS-DPEKNQYNEYFF 88
GT I F PD+ +F T ++FD++ +A R+RELAFLN ++I+L E + D EK Y
Sbjct: 195 GTLITFAPDETIFET-VRFDYDILAHRLRELAFLNAGISISLLDERTGDSEKFHYE---- 249
Query: 89 AGGLEEYVQWLNTDKKPLH-DVVGFRK-DVDGIT-IDLALQWCSDAYSDTMLGYANSIRT 145
GG+ EYV++LN +PLH DV+ +K D + +T I++ALQ+ + YS+ + Y NS+ T
Sbjct: 250 -GGIAEYVRFLNAGAEPLHPDVISLKKNDPESMTEIEVALQYTT-GYSEQIFSYVNSVNT 307
Query: 146 IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQ 205
+GGTH+EG ++++T+ +N+ +K+ +++ +S+ GE VREGLT IISV++ NP+FEGQ
Sbjct: 308 REGGTHLEGFRSAITKAVNNSARKNNLIRETGLSIRGEDVREGLTAIISVKIANPQFEGQ 367
Query: 206 TKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQK 265
TK RLGN V+ +VD V + L++Y E +P VL +I+ K L+A +A AA+ AR+L R+K
Sbjct: 368 TKMRLGNSNVKGIVDSLVYQSLSDYFEENPRVLSAIVEKVLTAARAREAARNARELARRK 427
Query: 266 SVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVER 325
S L ++ LPGKLADCS P SEI+IVEGDSAGGSAKQGRDRRFQAILPLRGKILNVE+
Sbjct: 428 STLETTGLPGKLADCSERDPARSEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEK 487
Query: 326 KDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFY 385
+ + KN EIQ LI A+G GV GE F E RYH++I++TDADVDGAHIRTLLLTFF+
Sbjct: 488 ATQHRILKNAEIQALISAIGTGV-GEQFDPEKARYHRVILMTDADVDGAHIRTLLLTFFF 546
Query: 386 RYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGE 445
RY K L +EG +Y+ PPL++V +GK +Y + + E+K++ + ++QR+KGLGE
Sbjct: 547 RYMKRLIEEGFVYIAQPPLFRVAKGKVEKYAFREEEMKEIVKELGEKGV-TVQRYKGLGE 605
Query: 446 MMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 503
M QLW TT++P R+LK++ IEDA+ AN +F LMG V R++ I+ +A + NLD
Sbjct: 606 MNAGQLWSTTMDPASRVLKRVTIEDASFANEIFEKLMGEDVAARRDFIKRHAREVTNLD 664
>gi|261403882|ref|YP_003240123.1| DNA gyrase subunit B [Paenibacillus sp. Y412MC10]
gi|261280345|gb|ACX62316.1| DNA gyrase, B subunit [Paenibacillus sp. Y412MC10]
Length = 636
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 248/504 (49%), Positives = 336/504 (66%), Gaps = 14/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG P + + D GT + F PD ++FT +D+ T+ RIRELAF
Sbjct: 143 YQQEYHRGVPQYDIKV----IGDSDDHGTTVTFLPDPEIFTETTVYDYTTLLTRIRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
LN + + L E + ++YF + GG+ EYV++LN K+ LH D + D I
Sbjct: 199 LNKGIALTLTDE-----RTGASDYFKYEGGIIEYVKFLNEKKEALHEDPIYVEGSRDNIQ 253
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
++++LQ+ +D+Y++ + +AN+I T +GGTH G K++LTR +N +K+ +KD +L
Sbjct: 254 VEVSLQY-NDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYARKTGLIKDNTSNL 312
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ VREGLT IISV+VP P+FEGQTKT+LGN EVR +V+ E L E+L+ +P V
Sbjct: 313 SGDDVREGLTAIISVKVPEPQFEGQTKTKLGNSEVRGIVESLFAEKLQEFLQENPAVSRR 372
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
IL K+L A +A AA++AR++ R+KS L S+LPGKLADCSS SE++IVEGDSAGG
Sbjct: 373 ILEKALQASRAREAARKAREMTRRKSALEVSALPGKLADCSSKDASISELYIVEGDSAGG 432
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILPLRGKILNVE+ + N EI+ +I ALG G+ EDF RY
Sbjct: 433 SAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIITALGTGI-AEDFDLSKARY 491
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIII+TDADVDGAHIRTLLLTFFYRY + L + G IY+ PPL+K+ER K ++Y +
Sbjct: 492 HKIIIMTDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPPLFKIERNKVIRYAGSER 551
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
E ++ F N ++QR+KGLGEM QLWETT++PE R + Q+ IEDA A+ +F +
Sbjct: 552 ERDEIIKEFGENVKINVQRYKGLGEMNAGQLWETTMDPESRTMLQVTIEDAILADTLFDT 611
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG V+ R++ IQ A V NLD
Sbjct: 612 LMGDNVEPRRDFIQEHAKSVRNLD 635
>gi|435851213|ref|YP_007312799.1| DNA gyrase, B subunit [Methanomethylovorans hollandica DSM 15978]
gi|433661843|gb|AGB49269.1| DNA gyrase, B subunit [Methanomethylovorans hollandica DSM 15978]
Length = 634
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 238/503 (47%), Positives = 338/503 (67%), Gaps = 13/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y +G P+ V + GT + F PDK + T + F +T+ R+REL+F
Sbjct: 142 YYQRYEKGVPI----ADVQVFGKSEGTGTTVTFKPDKSILETTV-FIFDTLVTRLRELSF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I + + E+ + +Y GG+ +V+ LN + LH DV+ F ++ +G +
Sbjct: 197 LNKGLKITISDRRTSEEEKEVFQY--EGGIISFVEHLNQKRNVLHKDVIYFEREKEGTIV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+Y++++ +AN+I T +GGTH+ G KA+LTR N KK+ K D LS
Sbjct: 255 EIAMQY-TDSYNESVYSFANNINTHEGGTHLVGFKAALTRVANDYIKKNNLAKGDD-KLS 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT II+V++ P+FEGQTKT+LGN +V+ +V+ V E L E++E +P V ++I
Sbjct: 313 GEDIREGLTAIINVKLTEPQFEGQTKTKLGNSDVKGIVESMVSEGLAEFMEENPKVANAI 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K+L A +A AAK+AR+L R+K+ L S+LPGKLADCS P + E+++VEGDSAGGS
Sbjct: 373 LQKALDAQRAREAAKKARELTRRKNALDISTLPGKLADCSEKDPSQCELYLVEGDSAGGS 432
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILP RGKILNVE+ + + KN E+ +LI A+G G+ G+D+ RYH
Sbjct: 433 AKQGRDRRFQAILPFRGKILNVEKARLSRILKNTEVLSLITAMGTGI-GDDYDISRARYH 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
++II+TDADVDGAHIRTL+LT F+RY + L DEG +Y+ PPLY++++G+ Y Y D E
Sbjct: 492 RVIIMTDADVDGAHIRTLILTLFFRYMRPLIDEGYVYIAQPPLYRIKKGQAEHYVYSDRE 551
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + +IQR+KGLGEM P QLWETT+NPE R + Q+ +EDA A+ +FS L
Sbjct: 552 LNAKLKELGDKGI-NIQRYKGLGEMNPGQLWETTMNPETRTILQVTLEDAVVADEMFSIL 610
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG V+ RK I A LV NLD
Sbjct: 611 MGDEVEPRKNFIMKNAKLVTNLD 633
>gi|386002763|ref|YP_005921062.1| DNA gyrase subunit B [Methanosaeta harundinacea 6Ac]
gi|357210819|gb|AET65439.1| DNA gyrase, B subunit [Methanosaeta harundinacea 6Ac]
Length = 640
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/503 (48%), Positives = 352/503 (69%), Gaps = 16/503 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG+PV+ L H + D GT +RF PD ++F A++F +T+A R+RELAF
Sbjct: 151 YWQRYERGRPVSDLEVHGV----SDHTGTTVRFKPDPEIFE-AVEFSFDTLASRLRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN L I++ E + + EY + GG+ +V+ LN +K LH + F ++ DG ++
Sbjct: 206 LNRGLKISVEDERTAKRR----EYLYDGGIVSFVEHLNKNKDILHSPPIYFNREKDGTSV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ ++ Y++ +L +AN+I T +GGTH+ G +A+LT+T N + +K +KD D L+
Sbjct: 262 EVALQY-NNTYNENVLSFANNINTREGGTHLAGFRAALTKTTNEYARANKLLKD-DTKLT 319
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGL +ISVR+ +P+FEGQTKT+LGN V +V V E L+E+ E +P V I
Sbjct: 320 GDDLREGLVAVISVRLADPQFEGQTKTKLGNSAVGGIVSSLVSEGLSEFFEENPLVTVKI 379
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+ A +A +AA++AR+L R+K+ L S LPGKLADC+ P+ SE++IVEG+SAGGS
Sbjct: 380 VEKATQAYRARVAARKARELTRRKNALSSGGLPGKLADCAEKDPQLSELYIVEGESAGGS 439
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILPLRGKILNVER + KN EI+N+I ALG G+ G+DF+ + RY
Sbjct: 440 AKQGRNRHFQAILPLRGKILNVERARLDKILKNNEIRNIITALGTGI-GDDFQLDRARYR 498
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDG+HIRTLLLTFFYRY + L + G +Y+ PPLY+V+RGK Y Y +A+
Sbjct: 499 KVVIMTDADVDGSHIRTLLLTFFYRYMRELVEAGYVYIAQPPLYQVKRGKAATYAYSEAD 558
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + A ++QR+KGLGEM P QLWETT++PE+R + ++ +EDA EA+ +FS L
Sbjct: 559 LAGILEGSGGKA--TVQRYKGLGEMNPEQLWETTMDPERRTMLKVTLEDAMEADEIFSIL 616
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+E I+ +A ++ NLD
Sbjct: 617 MGEKVEPRREFIEAHARDVRNLD 639
>gi|125974861|ref|YP_001038771.1| DNA gyrase subunit B [Clostridium thermocellum ATCC 27405]
gi|256003883|ref|ZP_05428870.1| DNA gyrase, B subunit [Clostridium thermocellum DSM 2360]
gi|281418684|ref|ZP_06249703.1| DNA gyrase, B subunit [Clostridium thermocellum JW20]
gi|385777392|ref|YP_005686557.1| DNA gyrase subunit B [Clostridium thermocellum DSM 1313]
gi|419721172|ref|ZP_14248363.1| DNA gyrase, B subunit [Clostridium thermocellum AD2]
gi|419726568|ref|ZP_14253590.1| DNA gyrase, B subunit [Clostridium thermocellum YS]
gi|125715086|gb|ABN53578.1| DNA gyrase, B subunit [Clostridium thermocellum ATCC 27405]
gi|255992221|gb|EEU02316.1| DNA gyrase, B subunit [Clostridium thermocellum DSM 2360]
gi|281407768|gb|EFB38027.1| DNA gyrase, B subunit [Clostridium thermocellum JW20]
gi|316939072|gb|ADU73106.1| DNA gyrase, B subunit [Clostridium thermocellum DSM 1313]
gi|380770165|gb|EIC04063.1| DNA gyrase, B subunit [Clostridium thermocellum YS]
gi|380782872|gb|EIC12479.1| DNA gyrase, B subunit [Clostridium thermocellum AD2]
Length = 641
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/503 (48%), Positives = 336/503 (66%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGKPVT + + + GT+ F PD ++F +FD + R+RELAF
Sbjct: 146 YRQRYERGKPVTPVEI----IGDTNLTGTKTTFKPDPEIFEVT-EFDFEVLLTRLRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN L I LR D PE+ + GG+ +V++++ +K PLH+ + F DG ++
Sbjct: 201 LNKGLKIILR--DERPEEPVEKHLHYEGGIVSFVEYMDRNKDPLHEPIYFDGYKDGCYVE 258
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+A+Q+ D Y + + +AN+I T +GGTH+ G K ++T+ LN KK +K+ D +L G
Sbjct: 259 IAMQYNKDVYVENIHSFANNISTAEGGTHLTGFKTAITKVLNDYAKKFNFLKENDKNLLG 318
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
E VREGLT +ISV++P+P+FEGQTKT+LGN EVR V+ + E +LE +P V IL
Sbjct: 319 EDVREGLTAVISVKIPDPQFEGQTKTKLGNSEVRSFVESIINEKFASFLEENPSVTRLIL 378
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K + + +A AA++AR+L R+K+VL +S+LPGKLADC+ P EIFIVEGDSAGGSA
Sbjct: 379 DKCIMSARAREAARKARELTRRKNVLETSTLPGKLADCTERDPSLCEIFIVEGDSAGGSA 438
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQGR+RRFQAILPL GK+LNVE+ +Y N+++ +I ALG + G+DF LRYHK
Sbjct: 439 KQGRNRRFQAILPLWGKMLNVEKARVDKVYGNDKLTPVIMALGTNI-GQDFDITKLRYHK 497
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
III+ DADVDGAHIRTLLLTFFYRY L G +Y+ PPLYK+ +GK Y Y+D+EL
Sbjct: 498 IIIMADADVDGAHIRTLLLTFFYRYMTPLITNGYVYIAQPPLYKITKGKTELYAYNDSEL 557
Query: 423 KK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
+K ++ + +IQRFKGLGEM P QLW TT++PE R + ++ +EDA A+ +F+ L
Sbjct: 558 EKIIRENQWKKEECTIQRFKGLGEMNPEQLWTTTMDPETRTILRVELEDAIAADEIFTIL 617
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ RKE IQ A LV NLD
Sbjct: 618 MGDKVEPRKEFIQANAKLVTNLD 640
>gi|399889393|ref|ZP_10775270.1| DNA gyrase subunit B [Clostridium arbusti SL206]
Length = 636
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 245/507 (48%), Positives = 348/507 (68%), Gaps = 20/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG + + + GT+I F PD +F I+F ++T+A R+RELAF
Sbjct: 143 WRQLYHRGNVASPFE----EIGDTEEHGTQINFKPDSDIFE-EIEFSYDTLAQRLRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I E D E + + + GG++ +V +LN +K+P+ + G++ D
Sbjct: 198 LNKGIKINFIDERHDKE----DTFHYEGGIKSFVSYLNRNKEPVFPEPIYIEGYKDDY-- 251
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+++ALQ+ +D Y++ + +AN+I T++GGTH+ G K++LTR LN +K +K+ D
Sbjct: 252 -AVEIALQY-NDGYAENLFSFANNIDTVEGGTHLAGFKSALTRALNDYARKFNFIKENDK 309
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSG+ +REGLT +IS+++ NP+FEGQTKT+LGN EVR +VD + E ++ +LE +P V
Sbjct: 310 NLSGDDIREGLTAVISIKLSNPQFEGQTKTKLGNSEVRGIVDNILGEKVSAFLEENPQVG 369
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ KSL A +A AAK+AR+L R+KSVL +++LPGKLADCSS P E EI+IVEGDSA
Sbjct: 370 KLIIDKSLLAARARDAAKKARELTRRKSVLETTALPGKLADCSSKDPAECEIYIVEGDSA 429
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR+FQAILPLRGKI+NVE++ + +E I+ +I A G G+ +DF E +
Sbjct: 430 GGSAKQGRDRKFQAILPLRGKIMNVEKQRIDKILNSEMIRAMITAFGAGIS-KDFNIEKI 488
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYH+III+TDADVDGAHIRTLLLTFFYRY + L ++G +Y+ PPLYKV +GK+ YCY
Sbjct: 489 RYHRIIIMTDADVDGAHIRTLLLTFFYRYMRELVEQGHVYIAQPPLYKVSKGKKEIYCYL 548
Query: 419 DAELKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ EL + SIQR+KGLGEM QLWETT++PE+R+L + +EDA A+ +
Sbjct: 549 EDELDNALEEIGGKDNNTSIQRYKGLGEMNAEQLWETTMDPERRILLKATVEDAMAADEI 608
Query: 478 FSSLMGARVDTRKELI-QNAANLVNLD 503
F+ LMG +V+ R+E I QNA N+VNLD
Sbjct: 609 FTILMGDKVEPRREFIQQNAKNVVNLD 635
>gi|323703937|ref|ZP_08115567.1| DNA gyrase, B subunit [Desulfotomaculum nigrificans DSM 574]
gi|323531095|gb|EGB21004.1| DNA gyrase, B subunit [Desulfotomaculum nigrificans DSM 574]
Length = 636
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 250/506 (49%), Positives = 342/506 (67%), Gaps = 18/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ YSRG PV+ L + GT++ F PD ++F F T+ R+RELA+
Sbjct: 143 YHQAYSRGVPVSELKI----IGKSKSTGTKVTFKPDPEIFEET-TFSLETLVQRLRELAY 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I ++ E DP Q + F GG+ ++V+ LN +K+ LH V G ++
Sbjct: 198 LNKGVKITIKDERKDPPVEQ--TFQFDGGIRDFVKHLNRNKQVLHSKPIYVTGEKEQ--- 252
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++ALQ+ +D Y++ +L +AN+I T+DGGTH G K +LTR +N G+ +K+ D
Sbjct: 253 IIVEIALQY-NDTYNENILSFANNIHTVDGGTHEIGFKTALTRVVNDYGRNHNLLKNSDP 311
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSGE +REG T +ISV+V P+FEGQTKT+LGN EVR +VD + L YLE +P V
Sbjct: 312 NLSGEDIREGATVVISVKVREPQFEGQTKTKLGNSEVRGIVDSIFADGLATYLEENPTVG 371
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K+++A +A AA++AR+L R+KS L + SLPGKLADCS P SE+++VEGDSA
Sbjct: 372 KRIIEKAITAARAREAARKARELTRRKSALDTMSLPGKLADCSEKDPSVSELYLVEGDSA 431
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDRRFQAILPLRGKILNVE+ + NEEI+ +I ALG G+ G+DF
Sbjct: 432 GGSAKQGRDRRFQAILPLRGKILNVEKARMDKILANEEIRAMITALGCGI-GQDFDISKA 490
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHKIII+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPL++V +GK Y Y
Sbjct: 491 RYHKIIIMTDADVDGAHIRTLLLTFFYRHMRPLIEAGYVYIAQPPLFRVRKGKLDSYVYS 550
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D EL+++ + + +IQR+KGLGEM P QLWETT++P+ R + Q+ +EDA EA+ F
Sbjct: 551 DHELEELLKRVGYDNV-NIQRYKGLGEMNPEQLWETTMDPDTRTVLQVTLEDAIEADATF 609
Query: 479 SSLMGARVDTRKELIQ-NAANLVNLD 503
S LMG RV+ R++ IQ NA + NLD
Sbjct: 610 SMLMGDRVEPRRDFIQENAQYVRNLD 635
>gi|431081762|ref|ZP_19495852.1| DNA gyrase subunit B [Enterococcus faecium E1604]
gi|431116731|ref|ZP_19497997.1| DNA gyrase subunit B [Enterococcus faecium E1613]
gi|430565694|gb|ELB04840.1| DNA gyrase subunit B [Enterococcus faecium E1604]
gi|430568511|gb|ELB07558.1| DNA gyrase subunit B [Enterococcus faecium E1613]
Length = 648
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/507 (48%), Positives = 343/507 (67%), Gaps = 14/507 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L ++ DR GT + F PD ++FT +FD + +A RIRELAF
Sbjct: 149 YYQEYRRGAVVDDLKI----IEQTDRHGTTVHFMPDPEIFTETTEFDFSKLATRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I++ ED E+ NEY + GG++ YV++LN +K + + V + I +
Sbjct: 205 LNRGMRISI--EDKREEEPVINEYHYDGGIKSYVEYLNANKTVIFPEPVYLEGEQQDIAV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ +D Y ++ +AN+I T +GGTH G K +LTR +N +K K +K+ D +L+
Sbjct: 263 EVSMQY-TDGYHSNIMSFANNIHTYEGGTHESGFKTALTRVINDYARKQKLMKENDDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +IS++ P+P+FEGQTKT+LGN EVR V D+ E+ ++L +P V I
Sbjct: 322 GEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEHFMKFLLENPSVGRQI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A LAAKRAR++ R+K L S+LPGKLADCSS PE+ E+FIVEGDSAGGS
Sbjct: 382 VEKGLLASRARLAAKRAREVTRRKGALEISNLPGKLADCSSNDPEKCELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILP+RGKILNVE+ + NEEI++L A+G G GEDF RYH
Sbjct: 442 AKQGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GEDFDVSKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD--- 418
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PPLY V++GK + Y
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQPPLYGVKQGKNITYVQPGKN 560
Query: 419 -DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ ELK+V +S P++ S+QR+KGLGEM QLWETT++P RM+ ++ ++DA A+ +
Sbjct: 561 AEEELKQVVASLPASPKPSVQRYKGLGEMDDHQLWETTMDPSNRMMARVSVDDAIAADQI 620
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
F LMG RV+ R+ I+ A+ V NLD
Sbjct: 621 FEMLMGDRVEPRRAFIEENAHYVKNLD 647
>gi|182416761|ref|ZP_02948158.1| DNA gyrase, B subunit [Clostridium butyricum 5521]
gi|237669641|ref|ZP_04529619.1| DNA gyrase, B subunit [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182379418|gb|EDT76913.1| DNA gyrase, B subunit [Clostridium butyricum 5521]
gi|237654875|gb|EEP52437.1| DNA gyrase, B subunit [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 637
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 246/504 (48%), Positives = 351/504 (69%), Gaps = 13/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+YS+GK +T V + GT++ F PD ++F I FD +A R+RELAF
Sbjct: 143 WQQEYSKGKVLTD----VEKIGESSESGTQVYFKPDAEIFDEVI-FDFEILAQRLRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
LN + I L + EK + + + GG++ +V +LN +K LH+ + + + D +++
Sbjct: 198 LNKGIYIKLVDLREENEKEEV--FHYEGGIKSFVSYLNRNKVALHEEPIYIEGIKDNVSV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D Y++ + +AN+I T++GGTH+ G K +LTR N KK +K+ D + +
Sbjct: 256 EVALQY-NDGYTENIFSFANNIDTVEGGTHLVGFKTALTRAFNDYAKKFGHIKENDKNFT 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT ++SV++ P+FEGQTKT+LGN EVR +VD V E ++ +LE +P V I
Sbjct: 315 GDDIREGLTAVVSVKIEEPQFEGQTKTKLGNSEVRGIVDSIVGECISTFLEENPSVGKMI 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AA++AR+L R KSVL S+LPGKLADCSS P+E EI+IVEGDSAGGS
Sbjct: 375 VDKALMAARARDAARKARELTR-KSVLERSTLPGKLADCSSKDPKECEIYIVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R+FQAILPLRGKILNVE++ + + I++++ A G G+ G DF E +RY
Sbjct: 434 AKQGRNRKFQAILPLRGKILNVEKQRLDRILNADTIRSMVTAFGAGI-GNDFDIEKIRYD 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDADVDGAHIRTLLLTFFYRY + L DEG +Y+ PPLYK+ +GK+ Y Y DAE
Sbjct: 493 RIIIMTDADVDGAHIRTLLLTFFYRYMRPLIDEGHVYIAQPPLYKISKGKKEHYAYSDAE 552
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L++V F + IQR+KGLGEM QLW+TT++PEQR+L ++ +EDA +A+ +F+
Sbjct: 553 LEQVLIDFGGKDNSTDIQRYKGLGEMNASQLWDTTMDPEQRILLRVNVEDAMQADEIFTI 612
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ RKE I QNA N+VNLD
Sbjct: 613 LMGEKVEPRKEFIQQNAKNVVNLD 636
>gi|257885591|ref|ZP_05665244.1| DNA gyrase B subunit [Enterococcus faecium 1,231,501]
gi|257821447|gb|EEV48577.1| DNA gyrase B subunit [Enterococcus faecium 1,231,501]
Length = 648
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/507 (48%), Positives = 343/507 (67%), Gaps = 14/507 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L ++ DR GT + F PD ++FT +FD + +A RIRELAF
Sbjct: 149 YYQEYRRGAVVDDLKI----IEQTDRHGTTVHFTPDPEIFTETTEFDFSKLATRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I++ ED E+ NEY + GG++ YV++LN +K + + V + I +
Sbjct: 205 LNRGMRISI--EDKREEEPVINEYHYEGGIKSYVEYLNANKTVIFPEPVYLEGEQQDIAV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ +D Y ++ +AN+I T +GGTH G K +LTR +N +K K +K+ D +L+
Sbjct: 263 EVSMQY-TDGYHSNIMSFANNIHTYEGGTHESGFKTALTRVINDYARKQKLMKENDDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +IS++ P+P+FEGQTKT+LGN EVR V D+ E+ ++L +P V I
Sbjct: 322 GEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEHFMKFLLENPSVGRQI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A LAAKRAR++ R+K L S+LPGKLADCSS PE+ E+FIVEGDSAGGS
Sbjct: 382 VEKGLLASRARLAAKRAREVTRRKGALEISNLPGKLADCSSNDPEKCELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILP+RGKILNVE+ + NEEI++L A+G G GEDF RYH
Sbjct: 442 AKQGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GEDFDVSKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD--- 418
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PPLY V++GK + Y
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQPPLYGVKQGKNITYVQPGKN 560
Query: 419 -DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ ELK+V +S P++ S+QR+KGLGEM QLWETT++P RM+ ++ ++DA A+ +
Sbjct: 561 AEEELKQVVASLPASPKPSVQRYKGLGEMDDHQLWETTMDPSNRMMARVSVDDAIAADQI 620
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
F LMG RV+ R+ I+ A+ V NLD
Sbjct: 621 FEMLMGDRVEPRRAFIEENAHYVKNLD 647
>gi|410582430|ref|ZP_11319536.1| DNA gyrase subunit B [Thermaerobacter subterraneus DSM 13965]
gi|410505250|gb|EKP94759.1| DNA gyrase subunit B [Thermaerobacter subterraneus DSM 13965]
Length = 635
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 241/505 (47%), Positives = 341/505 (67%), Gaps = 20/505 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG+P T L V+ + D GT +RF PD ++F +F ++ + GR+RE+A
Sbjct: 141 HRQRYRRGQPETGL--EVVGTTAADDTGTYVRFKPDPEIFEET-EFKYDVVVGRLREIAL 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I LR E + + N + F GGL +V LN K+ LH + + ++ + DG+ +
Sbjct: 198 LNSGLYIELRDERT----GERNLFQFMGGLRSFVALLNRTKEALHPEPISYKAERDGVEV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQW + +Y +T+ +AN+I T +GGTH G K +LTR +N +K+ +K+ D +L+
Sbjct: 254 EMALQWTT-SYVETLYSFANTIHTHEGGTHEAGFKMALTRVVNDYARKANLLKNGDENLA 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT ++SV++P P+FEGQTKT+LGN EVR VVD E L Y E +P V +
Sbjct: 313 GDDIREGLTAVLSVKLPEPQFEGQTKTKLGNSEVRGVVDSVTGEALATYFEENPQVARRV 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+++A++A AA++AR+L R+KS L ++LPGKL DC+ P +E+FIVEGDSAGGS
Sbjct: 373 VEKAITAMRAREAARKARELTRRKSALEVTALPGKLTDCTVRDPAMAELFIVEGDSAGGS 432
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQA+LPLRGKILNVE+ + ++EI+ LI A+G G+ G++F RYH
Sbjct: 433 AKQGRDRRFQAVLPLRGKILNVEKARLDKILAHDEIRALITAIGTGI-GDEFDIHRARYH 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KII++TDADVDGAHIRTLLLTFF+RY + L + G +Y+ PPLY V +GK+ Y YDD +
Sbjct: 492 KIILMTDADVDGAHIRTLLLTFFFRYMRPLIEAGYVYIAQPPLYLVRQGKEEHYFYDDDQ 551
Query: 422 L----KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
L ++V P+ QRFKGLGEM QLWETT+NPE R L Q+ +EDA A+ +
Sbjct: 552 LEAFFRQVGKRMPA------QRFKGLGEMNAEQLWETTMNPETRTLLQVTLEDAMAADQI 605
Query: 478 FSSLMGARVDTRKELIQNAANLVNL 502
FS LMG+RV+ R+E I+ A V
Sbjct: 606 FSILMGSRVEPRREFIEQHARKVRF 630
>gi|149182285|ref|ZP_01860764.1| DNA gyrase subunit B [Bacillus sp. SG-1]
gi|148849977|gb|EDL64148.1| DNA gyrase subunit B [Bacillus sp. SG-1]
Length = 638
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/503 (48%), Positives = 342/503 (67%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QK+ +G P L D GT I F PD ++FT +++++ +A R+RELAF
Sbjct: 144 HYQKFEKGVPSGDLKV----TGESDVTGTIIHFKPDPEIFTETTEYEYDILANRLRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I + ED+ E ++ NEY + GG++ YV+ LN K+ +H+ + + D I++
Sbjct: 200 LNRGIKIII--EDNRVE-DKKNEYHYEGGIKSYVEHLNRSKEVVHEEPIYIEGEKDNISV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D ++ + +AN+I T +GGTH G K +LTR +N +K+ K+ D +LS
Sbjct: 257 EIALQY-NDGFASNLYSFANNIHTYEGGTHESGFKTALTRVINDYARKNHLYKESDANLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG+T IIS++ P+P+FEGQTKT+LGN E R + D E+ +L +P V +
Sbjct: 316 GEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDALFSEHFESFLLENPVVARKV 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A LAAK+AR+L R+KS L SSLPGKLADCSS P+ SEI+IVEGDSAGGS
Sbjct: 376 VDKGLMAARARLAAKKARELTRRKSALEVSSLPGKLADCSSRDPKISEIYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKI+NVE+ + N E++ +I ALG G+ GEDF RY
Sbjct: 436 AKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAMITALGTGI-GEDFDISKARYQ 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPLY++++GK+++Y Y D +
Sbjct: 495 KVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEAGYIYIAQPPLYQIKQGKKIEYVYSDKQ 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ + P+ IQR+KGLGEM QLWETT++PE R L Q+ +EDA EA+ F L
Sbjct: 555 LEEALAQMPAQPKPGIQRYKGLGEMNATQLWETTMDPEYRTLLQVSLEDAIEADETFEML 614
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NAA + NLD
Sbjct: 615 MGDKVEPRRNFIEDNAAYVKNLD 637
>gi|205371906|ref|ZP_03224726.1| DNA gyrase subunit B [Bacillus coahuilensis m4-4]
Length = 480
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 237/483 (49%), Positives = 337/483 (69%), Gaps = 7/483 (1%)
Query: 23 VDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQ 82
V D+ GT I F PD ++FT +++ + +A R+RELAFLN + I + ED E ++
Sbjct: 2 VGETDKTGTIIHFIPDPEIFTETREYEFDILANRLRELAFLNRGIKITI--EDKRVE-DK 58
Query: 83 YNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYAN 141
NEY + GG++ YV+ +N K+ +HD + + DGI++++++Q+ ++ Y+ + YAN
Sbjct: 59 RNEYLYEGGIKSYVEHINRTKEVIHDEPIYIEGEKDGISVEVSIQY-NNGYTSNIFSYAN 117
Query: 142 SIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPE 201
+I T +GGTH G K +LTR +N +++ K+ D +LSGE VREG+T I+SV+ P+P+
Sbjct: 118 NINTYEGGTHESGFKTALTRVINDYARRNNIFKESDPNLSGEDVREGITAIVSVKHPDPQ 177
Query: 202 FEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 261
FEGQTKT+LGN E R + D E+ +++ +P V I+ K + A +A +AAK+AR+L
Sbjct: 178 FEGQTKTKLGNSEARTITDALFSEHFEKFMMENPTVARKIVEKGVMAARARMAAKKAREL 237
Query: 262 VRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKIL 321
R+KS L SSLPGKLADCSS P+ SEI++VEGDSAGGSAKQGRDR FQAILPLRGKIL
Sbjct: 238 TRRKSALEVSSLPGKLADCSSRDPKISEIYVVEGDSAGGSAKQGRDRHFQAILPLRGKIL 297
Query: 322 NVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLL 381
NVE+ + N E++++I ALG G+ GEDF RYHKI+I+TDADVDG+HIRTLLL
Sbjct: 298 NVEKARLDKILSNNEVRSIITALGTGI-GEDFDIAKARYHKIVIMTDADVDGSHIRTLLL 356
Query: 382 TFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFK 441
TFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y++ +L+ V S+ IQR+K
Sbjct: 357 TFFYRYMRQILEAGYVYIAQPPLYKVQQGKKVEYAYNEKQLEAVLSTLSPTPKPGIQRYK 416
Query: 442 GLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLV 500
GLGEM P QLWETT++P+ R L Q+ +EDA EA+ F LMG +V+ R+ I +NA +
Sbjct: 417 GLGEMNPDQLWETTMDPQTRTLLQVSLEDAIEADETFEILMGDKVEPRRNFIEENAVYVK 476
Query: 501 NLD 503
NLD
Sbjct: 477 NLD 479
>gi|281491407|ref|YP_003353387.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis KF147]
gi|281375141|gb|ADA64657.1| DNA gyrase, subunit B [Lactococcus lactis subsp. lactis KF147]
Length = 651
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/508 (45%), Positives = 345/508 (67%), Gaps = 14/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG L + DR+GT + F PD ++FT ++FD + +A R+RELAF
Sbjct: 150 YYQEYHRGLVGDDLKI----IGETDRRGTTVHFVPDPEIFTETVEFDFDKLATRVRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I+L + EKN+ + + + GG++ YV++LN +K + + F + ++DGI +
Sbjct: 206 LNRGLRISLTDKREGNEKNEVH-FHYEGGIQSYVEYLNENKTVIFEPAIFTEGEMDGIAV 264
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y ++ +AN+I T +GGTH +G + +LTR +N+ K++K +K+ + +L+
Sbjct: 265 EVAMQY-TDTYHSVVMSFANNINTHEGGTHEQGFRTALTRVINNYAKQNKILKENEDNLT 323
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT +ISV+ PNP+FEGQTKT+LGN EV +V++ E LT ++ +P V I
Sbjct: 324 GDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVTGIVNKLFAEALTTFMLENPQVARKI 383
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS PE++E+FIVEGDSAGGS
Sbjct: 384 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNPEQTELFIVEGDSAGGS 443
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G D+ RYH
Sbjct: 444 AKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADYDLSKARYH 502
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PP+Y ++ G + + E
Sbjct: 503 KLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGIKVGSETKEYIQPGE 562
Query: 422 -----LKKVKSSFPSNALY-SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
L++ + + ++QR+KGLGEM QLWETT++PE R++ ++ +EDAAEA+
Sbjct: 563 NQEKDLQEALARWAQGRTKPTVQRYKGLGEMDDHQLWETTMDPEHRLMARVSVEDAAEAD 622
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+N A +D
Sbjct: 623 KIFDMLMGDRVEPRREFIENNAQYSTID 650
>gi|116332686|ref|YP_794213.1| DNA gyrase, B subunit [Lactobacillus brevis ATCC 367]
gi|116098033|gb|ABJ63182.1| DNA gyrase subunit B [Lactobacillus brevis ATCC 367]
Length = 647
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 234/479 (48%), Positives = 317/479 (66%), Gaps = 5/479 (1%)
Query: 26 KDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNE 85
+D+ GT + F PD +F FD T+ RIRELAFLN L I +R D PEK +
Sbjct: 172 QDQHGTAVHFLPDPDIFRETTVFDIKTLTTRIRELAFLNKGLRITIR--DERPEKPTEED 229
Query: 86 YFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIR 144
+ + GG+ YV +LN +K+ L + + +GIT+++ALQ+ D Y + +L + N+I
Sbjct: 230 FLYEGGIRHYVDYLNENKETLFEPPIYVEGQENGITVEVALQYTDD-YHNNLLTFTNNIH 288
Query: 145 TIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEG 204
T +GGTH EG K +LTR +N +++K +KD + +L+G+ VREGLT ++SV+ P+P+FEG
Sbjct: 289 TYEGGTHEEGFKRALTRVVNDYARQNKLMKDNEANLTGDDVREGLTAVVSVKHPDPQFEG 348
Query: 205 QTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQ 264
QTKT+LGN + R VD + ++ ++ HPDV I+ K A KA +AAKRAR++ R+
Sbjct: 349 QTKTKLGNSDARTAVDHTFADHFMRFMMEHPDVARKIVDKGTLASKARVAAKRAREVTRK 408
Query: 265 KSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVE 324
KS L S+LPGKLAD +S PE SE+FIVEGDSAGGSAKQGR R QAILP+RGKILNVE
Sbjct: 409 KSGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVE 468
Query: 325 RKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFF 384
+ + NEEI++L A+G G G DF + YHK+I++TDADVDGAHIRTLLLT
Sbjct: 469 KASMDRILANEEIRSLFTAMGTGF-GNDFDVSKVNYHKLILMTDADVDGAHIRTLLLTLV 527
Query: 385 YRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLG 444
YRY + L D G +Y+ PPLY+V +GK +Y D ELK + P + IQR+KGLG
Sbjct: 528 YRYMRPLLDAGFVYIACPPLYRVRQGKMQRYLDSDEELKDLLGQLPPSPKPQIQRYKGLG 587
Query: 445 EMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EM QLWETT+NPE R L ++ +DA A+ VF+ LMG +V R+E I+N A LD
Sbjct: 588 EMDAEQLWETTMNPENRRLLRVDAQDAINADQVFTMLMGDKVAPRREFIENNATFAELD 646
>gi|329121792|ref|ZP_08250408.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Dialister
micraerophilus DSM 19965]
gi|327468065|gb|EGF13553.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Dialister
micraerophilus DSM 19965]
Length = 646
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/476 (50%), Positives = 333/476 (69%), Gaps = 7/476 (1%)
Query: 30 GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA 89
GT + F PD +F FD++T+ R+RELAFLN L I L D+ ++ E+ +A
Sbjct: 175 GTTVTFKPDPLIFKEGTDFDYDTLKVRMRELAFLNKGLRITL--SDNRDGVSRVEEFHYA 232
Query: 90 GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDG 148
GG+ E++++LN K +HD V+ F + D I +D+A+Q+ + YS++M + N I T +G
Sbjct: 233 GGIVEFIKFLNEGKDAVHDDVISFEGERDKIIVDIAMQYQT-GYSESMYTFVNDINTTEG 291
Query: 149 GTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKT 208
G H+ G +++LTRT+N + + +K+ + +L+G+ VREGLTC+ISV+VPNP+FEGQTKT
Sbjct: 292 GMHLSGFRSALTRTINDYARTNNLLKENEDNLTGDDVREGLTCVISVKVPNPQFEGQTKT 351
Query: 209 RLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVL 268
+LGN EV+ VVD V E L YLE HP I+ K ++A +A AAKRAR+L R+K+ L
Sbjct: 352 KLGNLEVKGVVDNIVSEGLHIYLEEHPSEARLIVEKGITASRAREAAKRARELTRRKNAL 411
Query: 269 RSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDE 328
SSLPGKL+DCS P+++EI+IVEGDSAGGSAK GRDRR+QAILPLRGKILNVE+
Sbjct: 412 EVSSLPGKLSDCSEKDPKKTEIYIVEGDSAGGSAKSGRDRRYQAILPLRGKILNVEKARV 471
Query: 329 AAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQ 388
+ ++ I+ +I A G GV E F LRY+KIII+TDADVDGAHIRTLLLTFFYRY
Sbjct: 472 DRVLNSDTIRMMITAFGTGVS-EGFDISKLRYYKIIIMTDADVDGAHIRTLLLTFFYRYM 530
Query: 389 KTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMP 448
K L EG +Y+ PPLY+V +G+Q Y YDD E K+ + +IQR+KGLGEM P
Sbjct: 531 KPLITEGHVYIAKPPLYQVRKGRQKYYTYDDDEQNKLLDEIGRDGC-TIQRYKGLGEMDP 589
Query: 449 VQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 503
QLW TT+NPEQR++ ++ + DA EA+ +F+ LMG +V+ R++ I +NA N+ NLD
Sbjct: 590 EQLWNTTMNPEQRVMMRVELTDAVEADRLFTILMGDKVEPRRKFIEENAMNVTNLD 645
>gi|188588443|ref|YP_001919471.1| DNA gyrase subunit B [Clostridium botulinum E3 str. Alaska E43]
gi|251778873|ref|ZP_04821793.1| DNA gyrase, B subunit [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|188498724|gb|ACD51860.1| DNA gyrase, B subunit [Clostridium botulinum E3 str. Alaska E43]
gi|243083188|gb|EES49078.1| DNA gyrase, B subunit [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 635
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/504 (48%), Positives = 350/504 (69%), Gaps = 15/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+YS+GK + L + + GT I F PD ++F ++FD +T++ R+RELAF
Sbjct: 143 WQQEYSKGKVLYDLK----QIGDTEESGTTIYFKPDAEIFD-EVEFDFDTLSQRLRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
LN + I L D E+N Y++ GG++ +V +LN +K PLH + + + D +T+
Sbjct: 198 LNKGINITLIDCRDDREEN----YYYEGGIKSFVAYLNRNKTPLHPEPIYVEGIKDKVTV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+L LQ+ +D Y++ + +AN+I TI+GGTH+ G K +LTR N K+ +K+ D + S
Sbjct: 254 ELGLQY-NDGYTENLFSFANNIDTIEGGTHLVGFKTALTRAFNDYAKRFGFIKENDKNFS 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT +ISV++ +P+FEGQTKT+LGN EV+ +VD V EY+ +LE +P I
Sbjct: 313 GDDIREGLTAVISVKIEDPQFEGQTKTKLGNSEVKGIVDSIVSEYIGIFLEENPGTSKII 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AA++AR+L R KSVL ++LPGKLADCSS P E EI+IVEGDSAGGS
Sbjct: 373 IDKALMAARAREAARKARELTR-KSVLERTTLPGKLADCSSKDPRECEIYIVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQAILPLRGKI+NVE++ + +E I++++ A G G+ G+DF E +RY+
Sbjct: 432 AKQGRDRKFQAILPLRGKIMNVEKQRLDKILNSETIRSMVTAFGGGI-GKDFDIEKIRYN 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDADVDGAHIRTLLLTFFYRY + L ++G +Y+ PPL++V +GK+ Y Y DAE
Sbjct: 491 RIIIMTDADVDGAHIRTLLLTFFYRYMRELVEQGHVYIAQPPLFRVGKGKKETYAYSDAE 550
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L +V + IQR+KGLGEM QLW+TT++P +R+L + IEDA A+ +F+
Sbjct: 551 LDQVLQDMGGKDNSVDIQRYKGLGEMNATQLWDTTMDPSKRILLKAEIEDAMAADEIFTI 610
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R+E I QNA N+VNLD
Sbjct: 611 LMGEKVEPRREFIEQNAKNVVNLD 634
>gi|220927465|ref|YP_002504374.1| DNA gyrase subunit beta [Clostridium cellulolyticum H10]
gi|219997793|gb|ACL74394.1| DNA gyrase, B subunit [Clostridium cellulolyticum H10]
Length = 642
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 246/506 (48%), Positives = 347/506 (68%), Gaps = 14/506 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QKYSRGKP+T++ V D GT F PD ++F I +D + + R RE+AF
Sbjct: 145 YRQKYSRGKPLTSVDI----VGDTDETGTITTFKPDPEIFE-EIVYDFDAMISRYREMAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L D PE++ + GG+ +V++LN K+PLHD V+ D +
Sbjct: 200 LNKGINIKLI--DERPEESVEKNLHYEGGIISFVEYLNKSKEPLHDEVIYLEGSRDANIV 257
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+Y++++ YAN+I T +GGTH+ G +A++T+ LN +K +K+ D +LS
Sbjct: 258 EVAMQY-NDSYNESVFTYANNIATTEGGTHLTGFRAAITKVLNDYARKFNILKENDKNLS 316
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT ++SV++P P+FEGQTKT+LGN E+R +V+ V + L +LE HP V I
Sbjct: 317 GEDVREGLTAVLSVKLPEPQFEGQTKTKLGNSEIRTLVENVVSDKLFIFLEEHPAVAKII 376
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L KS++A +A AA++AR+L R+KS + SS+LPGKLADCS P ++EIFIVEGDSAGGS
Sbjct: 377 LDKSITAARAREAARKARELTRRKSAMDSSTLPGKLADCSEKDPTKTEIFIVEGDSAGGS 436
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+ QAILPL GK+LNVE+ +Y NE++ +I ALG G+ G++F LRY
Sbjct: 437 AKQGRDRKIQAILPLWGKMLNVEKSRMDKVYDNEKLSPVIIALGAGI-GDEFDTSKLRYD 495
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+ DADVDG+HIR LLLTFF+RY + L ++G +Y+ +PPL+KV +GK+ Y YDD E
Sbjct: 496 KIIIMADADVDGSHIRMLLLTFFFRYMRPLVEQGHVYIAMPPLFKVYKGKEEYYAYDDIE 555
Query: 422 LKKV---KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
L K+ + + +IQRFKGLGEM P QLWETT+NPE R + ++ +EDA A+ VF
Sbjct: 556 LDKIFKERGWRKDDPNVNIQRFKGLGEMNPDQLWETTMNPETRTIIKVDLEDAISADEVF 615
Query: 479 SSLMGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+E IQ +A ++ NLD
Sbjct: 616 CKFMGDKVEPRREYIQMHARDVSNLD 641
>gi|251794042|ref|YP_003008773.1| DNA gyrase subunit beta [Paenibacillus sp. JDR-2]
gi|247541668|gb|ACS98686.1| DNA gyrase, B subunit [Paenibacillus sp. JDR-2]
Length = 635
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/503 (48%), Positives = 338/503 (67%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG P V + D GT ++F PD ++FT +++ T+ RIRELAF
Sbjct: 142 YQQEYRRGVP----QYDVKIIGESDETGTTVKFKPDPEIFTDTTVYEYETLQSRIRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN L I L D N + + GG+ E+V+ LN +K+ +H+ + D I +
Sbjct: 198 LNKGLEIEL----IDERTGTSNSFKYDGGIIEFVKHLNRNKEVMHEEPIYVEGSKDHIQV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+++LQ+ +D Y++ + +AN+I T +GGTH G K++LTR +N +K+ +KD D + S
Sbjct: 254 EVSLQY-NDGYTENIHSFANNINTHEGGTHESGFKSALTRIINDYARKTGLIKDNDSNFS 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IISV++P P+FEGQTKT+LGN EVR +V+ E L E+L+ +P V I
Sbjct: 313 GDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESFFAEKLQEFLDENPSVSRKI 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A AA++AR+L R+KS L SSLPGKLADCSS SE++IVEGDSAGGS
Sbjct: 373 VEKGLQAARAREAARKARELTRRKSALEVSSLPGKLADCSSKDASISELYIVEGDSAGGS 432
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVER + N EI+ +I ALG G+ G+DF RYH
Sbjct: 433 AKQGRDRHFQAILPLRGKILNVERARLDRILGNAEIRAIITALGTGI-GDDFDLAKARYH 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTL+LTFF+RY + + + G IY+ PPL+K+ER K ++Y + E
Sbjct: 492 KVIIMTDADVDGAHIRTLMLTFFFRYMRKIIEAGYIYIAQPPLFKIERNKVIRYAQSEKE 551
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
+++ + F A ++QR+KGLGEM QLWETT++PE R + Q+ IEDA EA+V+F +L
Sbjct: 552 REEIIAEFGEGAKVNVQRYKGLGEMNATQLWETTMDPESRTMLQVSIEDAIEADVIFDTL 611
Query: 482 MGARVDTRKELIQN-AANLVNLD 503
MG V+ R++ IQ A ++ NLD
Sbjct: 612 MGDNVEPRRDFIQQFAKDVKNLD 634
>gi|313892202|ref|ZP_07825795.1| DNA gyrase, B subunit [Dialister microaerophilus UPII 345-E]
gi|313119340|gb|EFR42539.1| DNA gyrase, B subunit [Dialister microaerophilus UPII 345-E]
Length = 646
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/476 (50%), Positives = 333/476 (69%), Gaps = 7/476 (1%)
Query: 30 GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA 89
GT + F PD +F FD++T+ R+RELAFLN L I L D+ ++ E+ +A
Sbjct: 175 GTTVTFKPDPLIFKEGTDFDYDTLKVRMRELAFLNKGLRITL--SDNRDGVSRVEEFHYA 232
Query: 90 GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDG 148
GG+ E++++LN K +HD V+ F + D I +D+A+Q+ + YS++M + N I T +G
Sbjct: 233 GGIVEFIKFLNEGKDAVHDDVISFEGERDKIIVDIAMQYQT-GYSESMYTFVNDINTTEG 291
Query: 149 GTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKT 208
G H+ G +++LTRT+N + + +K+ + +L+G+ VREGLTC+ISV+VPNP+FEGQTKT
Sbjct: 292 GMHLSGFRSALTRTINDYARTNNLLKENEDNLTGDDVREGLTCVISVKVPNPQFEGQTKT 351
Query: 209 RLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVL 268
+LGN EV+ VVD V E L YLE HP I+ K ++A +A AAKRAR+L R+K+ L
Sbjct: 352 KLGNLEVKGVVDNIVSEGLHIYLEEHPAEARLIVEKGITASRAREAAKRARELTRRKNAL 411
Query: 269 RSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDE 328
SSLPGKL+DCS P+++EI+IVEGDSAGGSAK GRDRR+QAILPLRGKILNVE+
Sbjct: 412 EVSSLPGKLSDCSEKDPKKTEIYIVEGDSAGGSAKSGRDRRYQAILPLRGKILNVEKARV 471
Query: 329 AAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQ 388
+ ++ I+ +I A G GV E F LRY+KIII+TDADVDGAHIRTLLLTFFYRY
Sbjct: 472 DRVLNSDTIRMMITAFGTGVS-EGFDISKLRYYKIIIMTDADVDGAHIRTLLLTFFYRYM 530
Query: 389 KTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMP 448
K L EG +Y+ PPLY+V +G+Q Y YDD E K+ + +IQR+KGLGEM P
Sbjct: 531 KPLITEGHVYIAKPPLYQVRKGRQKYYTYDDDEQNKLLDEIGRDGC-TIQRYKGLGEMDP 589
Query: 449 VQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 503
QLW TT+NPEQR++ ++ + DA EA+ +F+ LMG +V+ R++ I +NA N+ NLD
Sbjct: 590 EQLWNTTMNPEQRVMMRVELTDAVEADRLFTILMGDKVEPRRKFIEENAMNVTNLD 645
>gi|69246710|ref|ZP_00604078.1| DNA gyrase, B subunit [Enterococcus faecium DO]
gi|227550644|ref|ZP_03980693.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
gi|257878650|ref|ZP_05658303.1| DNA gyrase B subunit [Enterococcus faecium 1,230,933]
gi|257881316|ref|ZP_05660969.1| DNA gyrase B subunit [Enterococcus faecium 1,231,502]
gi|257888091|ref|ZP_05667744.1| DNA gyrase B subunit [Enterococcus faecium 1,141,733]
gi|257890533|ref|ZP_05670186.1| DNA gyrase B subunit [Enterococcus faecium 1,231,410]
gi|257893108|ref|ZP_05672761.1| DNA gyrase B subunit [Enterococcus faecium 1,231,408]
gi|257896291|ref|ZP_05675944.1| DNA gyrase B subunit [Enterococcus faecium Com12]
gi|257899275|ref|ZP_05678928.1| DNA gyrase B subunit [Enterococcus faecium Com15]
gi|260558231|ref|ZP_05830427.1| DNA gyrase B subunit [Enterococcus faecium C68]
gi|261206921|ref|ZP_05921610.1| DNA gyrase B subunit [Enterococcus faecium TC 6]
gi|289566502|ref|ZP_06446926.1| DNA gyrase, B subunit [Enterococcus faecium D344SRF]
gi|293379372|ref|ZP_06625516.1| DNA gyrase, B subunit [Enterococcus faecium PC4.1]
gi|293553551|ref|ZP_06674178.1| DNA gyrase, B subunit [Enterococcus faecium E1039]
gi|293563255|ref|ZP_06677707.1| DNA gyrase, B subunit [Enterococcus faecium E1162]
gi|293569155|ref|ZP_06680461.1| DNA gyrase, B subunit [Enterococcus faecium E1071]
gi|293572722|ref|ZP_06683686.1| DNA gyrase, B subunit [Enterococcus faecium E980]
gi|294616655|ref|ZP_06696426.1| DNA gyrase, B subunit [Enterococcus faecium E1636]
gi|294619749|ref|ZP_06699154.1| DNA gyrase, B subunit [Enterococcus faecium E1679]
gi|294623763|ref|ZP_06702591.1| DNA gyrase, B subunit [Enterococcus faecium U0317]
gi|314940127|ref|ZP_07847307.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a04]
gi|314943042|ref|ZP_07849846.1| DNA gyrase, B subunit [Enterococcus faecium TX0133C]
gi|314948160|ref|ZP_07851556.1| DNA gyrase, B subunit [Enterococcus faecium TX0082]
gi|314953426|ref|ZP_07856344.1| DNA gyrase, B subunit [Enterococcus faecium TX0133A]
gi|314993835|ref|ZP_07859171.1| DNA gyrase, B subunit [Enterococcus faecium TX0133B]
gi|314998140|ref|ZP_07863022.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a01]
gi|383327325|ref|YP_005353209.1| DNA gyrase subunit B, GyrB [Enterococcus faecium Aus0004]
gi|389867188|ref|YP_006374611.1| DNA topoisomerase subunit B [Enterococcus faecium DO]
gi|406580334|ref|ZP_11055544.1| DNA gyrase subunit B [Enterococcus sp. GMD4E]
gi|406589608|ref|ZP_11064039.1| DNA gyrase subunit B [Enterococcus sp. GMD1E]
gi|415892741|ref|ZP_11549986.1| DNA gyrase, B subunit [Enterococcus faecium E4453]
gi|416143534|ref|ZP_11599808.1| DNA gyrase, B subunit [Enterococcus faecium E4452]
gi|424764533|ref|ZP_18191957.1| DNA gyrase, B subunit [Enterococcus faecium TX1337RF]
gi|424793316|ref|ZP_18219441.1| DNA gyrase, B subunit [Enterococcus faecium V689]
gi|424806872|ref|ZP_18232295.1| DNA gyrase, B subunit [Enterococcus faecium S447]
gi|424819243|ref|ZP_18244369.1| DNA gyrase, B subunit [Enterococcus faecium R501]
gi|424857928|ref|ZP_18282007.1| DNA gyrase, B subunit [Enterococcus faecium R499]
gi|424907540|ref|ZP_18331019.1| DNA gyrase, B subunit [Enterococcus faecium R497]
gi|424951452|ref|ZP_18366546.1| DNA gyrase, B subunit [Enterococcus faecium R496]
gi|424953295|ref|ZP_18368268.1| DNA gyrase, B subunit [Enterococcus faecium R494]
gi|424957793|ref|ZP_18372500.1| DNA gyrase, B subunit [Enterococcus faecium R446]
gi|424962333|ref|ZP_18376695.1| DNA gyrase, B subunit [Enterococcus faecium P1986]
gi|424963547|ref|ZP_18377757.1| DNA gyrase, B subunit [Enterococcus faecium P1190]
gi|424967254|ref|ZP_18380961.1| DNA gyrase, B subunit [Enterococcus faecium P1140]
gi|424971814|ref|ZP_18385222.1| DNA gyrase, B subunit [Enterococcus faecium P1139]
gi|424975900|ref|ZP_18389027.1| DNA gyrase, B subunit [Enterococcus faecium P1137]
gi|424978603|ref|ZP_18391513.1| DNA gyrase, B subunit [Enterococcus faecium P1123]
gi|424981750|ref|ZP_18394460.1| DNA gyrase, B subunit [Enterococcus faecium ERV99]
gi|424984817|ref|ZP_18397334.1| DNA gyrase, B subunit [Enterococcus faecium ERV69]
gi|424988996|ref|ZP_18401285.1| DNA gyrase, B subunit [Enterococcus faecium ERV38]
gi|424990981|ref|ZP_18403164.1| DNA gyrase, B subunit [Enterococcus faecium ERV26]
gi|424996499|ref|ZP_18408302.1| DNA gyrase, B subunit [Enterococcus faecium ERV168]
gi|424999013|ref|ZP_18410666.1| DNA gyrase, B subunit [Enterococcus faecium ERV165]
gi|425002204|ref|ZP_18413652.1| DNA gyrase, B subunit [Enterococcus faecium ERV161]
gi|425005667|ref|ZP_18416888.1| DNA gyrase, B subunit [Enterococcus faecium ERV102]
gi|425008322|ref|ZP_18419408.1| DNA gyrase, B subunit [Enterococcus faecium ERV1]
gi|425012513|ref|ZP_18423323.1| DNA gyrase, B subunit [Enterococcus faecium E422]
gi|425013671|ref|ZP_18424390.1| DNA gyrase, B subunit [Enterococcus faecium E417]
gi|425016674|ref|ZP_18427223.1| DNA gyrase, B subunit [Enterococcus faecium C621]
gi|425020979|ref|ZP_18431264.1| DNA gyrase, B subunit [Enterococcus faecium C497]
gi|425024300|ref|ZP_18434373.1| DNA gyrase, B subunit [Enterococcus faecium C1904]
gi|425033613|ref|ZP_18438567.1| DNA gyrase, B subunit [Enterococcus faecium 515]
gi|425034562|ref|ZP_18439445.1| DNA gyrase, B subunit [Enterococcus faecium 514]
gi|425040395|ref|ZP_18444869.1| DNA gyrase, B subunit [Enterococcus faecium 513]
gi|425040652|ref|ZP_18445107.1| DNA gyrase, B subunit [Enterococcus faecium 511]
gi|425047072|ref|ZP_18451049.1| DNA gyrase, B subunit [Enterococcus faecium 510]
gi|425050522|ref|ZP_18454260.1| DNA gyrase, B subunit [Enterococcus faecium 509]
gi|425053384|ref|ZP_18456930.1| DNA gyrase, B subunit [Enterococcus faecium 506]
gi|425054280|ref|ZP_18457792.1| DNA gyrase, B subunit [Enterococcus faecium 505]
gi|425057355|ref|ZP_18460778.1| DNA gyrase, B subunit [Enterococcus faecium 504]
gi|425062497|ref|ZP_18465650.1| DNA gyrase, B subunit [Enterococcus faecium 503]
gi|427396885|ref|ZP_18889511.1| DNA gyrase subunit B [Enterococcus durans FB129-CNAB-4]
gi|430820786|ref|ZP_19439408.1| DNA gyrase subunit B [Enterococcus faecium E0045]
gi|430823214|ref|ZP_19441786.1| DNA gyrase subunit B [Enterococcus faecium E0120]
gi|430826501|ref|ZP_19444683.1| DNA gyrase subunit B [Enterococcus faecium E0164]
gi|430828712|ref|ZP_19446829.1| DNA gyrase subunit B [Enterococcus faecium E0269]
gi|430831766|ref|ZP_19449814.1| DNA gyrase subunit B [Enterococcus faecium E0333]
gi|430834919|ref|ZP_19452921.1| DNA gyrase subunit B [Enterococcus faecium E0679]
gi|430836323|ref|ZP_19454304.1| DNA gyrase subunit B [Enterococcus faecium E0680]
gi|430839252|ref|ZP_19457193.1| DNA gyrase subunit B [Enterococcus faecium E0688]
gi|430842549|ref|ZP_19460462.1| DNA gyrase subunit B [Enterococcus faecium E1007]
gi|430843001|ref|ZP_19460903.1| DNA gyrase subunit B [Enterococcus faecium E1050]
gi|430848164|ref|ZP_19465991.1| DNA gyrase subunit B [Enterococcus faecium E1133]
gi|430850647|ref|ZP_19468404.1| DNA gyrase subunit B [Enterococcus faecium E1185]
gi|430853333|ref|ZP_19471063.1| DNA gyrase subunit B [Enterococcus faecium E1258]
gi|430855826|ref|ZP_19473532.1| DNA gyrase subunit B [Enterococcus faecium E1392]
gi|430859054|ref|ZP_19476672.1| DNA gyrase subunit B [Enterococcus faecium E1552]
gi|430861179|ref|ZP_19478768.1| DNA gyrase subunit B [Enterococcus faecium E1573]
gi|430866247|ref|ZP_19481524.1| DNA gyrase subunit B [Enterococcus faecium E1574]
gi|430888509|ref|ZP_19484382.1| DNA gyrase subunit B [Enterococcus faecium E1575]
gi|430952221|ref|ZP_19486264.1| DNA gyrase subunit B [Enterococcus faecium E1576]
gi|430998689|ref|ZP_19488072.1| DNA gyrase subunit B [Enterococcus faecium E1578]
gi|431036317|ref|ZP_19492087.1| DNA gyrase subunit B [Enterococcus faecium E1590]
gi|431213196|ref|ZP_19501061.1| DNA gyrase subunit B [Enterococcus faecium E1620]
gi|431235057|ref|ZP_19503080.1| DNA gyrase subunit B [Enterococcus faecium E1622]
gi|431255558|ref|ZP_19504681.1| DNA gyrase subunit B [Enterococcus faecium E1623]
gi|431303596|ref|ZP_19508443.1| DNA gyrase subunit B [Enterococcus faecium E1626]
gi|431506942|ref|ZP_19515768.1| DNA gyrase subunit B [Enterococcus faecium E1634]
gi|431545128|ref|ZP_19518769.1| DNA gyrase subunit B [Enterococcus faecium E1731]
gi|431592395|ref|ZP_19521631.1| DNA gyrase subunit B [Enterococcus faecium E1861]
gi|431726687|ref|ZP_19525438.1| DNA gyrase subunit B [Enterococcus faecium E1904]
gi|431739124|ref|ZP_19528064.1| DNA gyrase subunit B [Enterococcus faecium E1972]
gi|431740593|ref|ZP_19529505.1| DNA gyrase subunit B [Enterococcus faecium E2039]
gi|431743908|ref|ZP_19532781.1| DNA gyrase subunit B [Enterococcus faecium E2071]
gi|431747293|ref|ZP_19536091.1| DNA gyrase subunit B [Enterococcus faecium E2134]
gi|431749480|ref|ZP_19538220.1| DNA gyrase subunit B [Enterococcus faecium E2297]
gi|431756019|ref|ZP_19544661.1| DNA gyrase subunit B [Enterococcus faecium E2883]
gi|431758014|ref|ZP_19546643.1| DNA gyrase subunit B [Enterococcus faecium E3083]
gi|431763280|ref|ZP_19551833.1| DNA gyrase subunit B [Enterococcus faecium E3548]
gi|431764847|ref|ZP_19553375.1| DNA gyrase subunit B [Enterococcus faecium E4215]
gi|431768128|ref|ZP_19556569.1| DNA gyrase subunit B [Enterococcus faecium E1321]
gi|431769369|ref|ZP_19557779.1| DNA gyrase subunit B [Enterococcus faecium E1644]
gi|431774627|ref|ZP_19562933.1| DNA gyrase subunit B [Enterococcus faecium E2369]
gi|431777539|ref|ZP_19565792.1| DNA gyrase subunit B [Enterococcus faecium E2560]
gi|431779780|ref|ZP_19567971.1| DNA gyrase subunit B [Enterococcus faecium E4389]
gi|431782442|ref|ZP_19570575.1| DNA gyrase subunit B [Enterococcus faecium E6012]
gi|431784263|ref|ZP_19572305.1| DNA gyrase subunit B [Enterococcus faecium E6045]
gi|447911526|ref|YP_007392938.1| DNA gyrase subunit B [Enterococcus faecium NRRL B-2354]
gi|68195124|gb|EAN09583.1| DNA gyrase, B subunit [Enterococcus faecium DO]
gi|227180223|gb|EEI61195.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
gi|257812878|gb|EEV41636.1| DNA gyrase B subunit [Enterococcus faecium 1,230,933]
gi|257816974|gb|EEV44302.1| DNA gyrase B subunit [Enterococcus faecium 1,231,502]
gi|257824145|gb|EEV51077.1| DNA gyrase B subunit [Enterococcus faecium 1,141,733]
gi|257826893|gb|EEV53519.1| DNA gyrase B subunit [Enterococcus faecium 1,231,410]
gi|257829487|gb|EEV56094.1| DNA gyrase B subunit [Enterococcus faecium 1,231,408]
gi|257832856|gb|EEV59277.1| DNA gyrase B subunit [Enterococcus faecium Com12]
gi|257837187|gb|EEV62261.1| DNA gyrase B subunit [Enterococcus faecium Com15]
gi|260075405|gb|EEW63711.1| DNA gyrase B subunit [Enterococcus faecium C68]
gi|260078549|gb|EEW66251.1| DNA gyrase B subunit [Enterococcus faecium TC 6]
gi|289161711|gb|EFD09587.1| DNA gyrase, B subunit [Enterococcus faecium D344SRF]
gi|291588124|gb|EFF19966.1| DNA gyrase, B subunit [Enterococcus faecium E1071]
gi|291590475|gb|EFF22213.1| DNA gyrase, B subunit [Enterococcus faecium E1636]
gi|291594019|gb|EFF25488.1| DNA gyrase, B subunit [Enterococcus faecium E1679]
gi|291596717|gb|EFF27940.1| DNA gyrase, B subunit [Enterococcus faecium U0317]
gi|291602306|gb|EFF32531.1| DNA gyrase, B subunit [Enterococcus faecium E1039]
gi|291604794|gb|EFF34276.1| DNA gyrase, B subunit [Enterococcus faecium E1162]
gi|291607214|gb|EFF36572.1| DNA gyrase, B subunit [Enterococcus faecium E980]
gi|292641895|gb|EFF60061.1| DNA gyrase, B subunit [Enterococcus faecium PC4.1]
gi|313587852|gb|EFR66697.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a01]
gi|313591726|gb|EFR70571.1| DNA gyrase, B subunit [Enterococcus faecium TX0133B]
gi|313594529|gb|EFR73374.1| DNA gyrase, B subunit [Enterococcus faecium TX0133A]
gi|313598242|gb|EFR77087.1| DNA gyrase, B subunit [Enterococcus faecium TX0133C]
gi|313640632|gb|EFS05212.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a04]
gi|313645414|gb|EFS09994.1| DNA gyrase, B subunit [Enterococcus faecium TX0082]
gi|364089253|gb|EHM31959.1| DNA gyrase, B subunit [Enterococcus faecium E4452]
gi|364093162|gb|EHM35462.1| DNA gyrase, B subunit [Enterococcus faecium E4453]
gi|378937019|gb|AFC62091.1| DNA gyrase subunit B, GyrB [Enterococcus faecium Aus0004]
gi|388532437|gb|AFK57629.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus faecium
DO]
gi|402419086|gb|EJV51368.1| DNA gyrase, B subunit [Enterococcus faecium TX1337RF]
gi|402916434|gb|EJX37312.1| DNA gyrase, B subunit [Enterococcus faecium V689]
gi|402918795|gb|EJX39457.1| DNA gyrase, B subunit [Enterococcus faecium S447]
gi|402926543|gb|EJX46578.1| DNA gyrase, B subunit [Enterococcus faecium R501]
gi|402927798|gb|EJX47727.1| DNA gyrase, B subunit [Enterococcus faecium R499]
gi|402930071|gb|EJX49768.1| DNA gyrase, B subunit [Enterococcus faecium R496]
gi|402930131|gb|EJX49822.1| DNA gyrase, B subunit [Enterococcus faecium R497]
gi|402939453|gb|EJX58361.1| DNA gyrase, B subunit [Enterococcus faecium R494]
gi|402940985|gb|EJX59747.1| DNA gyrase, B subunit [Enterococcus faecium P1986]
gi|402942732|gb|EJX61297.1| DNA gyrase, B subunit [Enterococcus faecium R446]
gi|402948841|gb|EJX66943.1| DNA gyrase, B subunit [Enterococcus faecium P1190]
gi|402952373|gb|EJX70195.1| DNA gyrase, B subunit [Enterococcus faecium P1137]
gi|402954780|gb|EJX72367.1| DNA gyrase, B subunit [Enterococcus faecium P1140]
gi|402957370|gb|EJX74762.1| DNA gyrase, B subunit [Enterococcus faecium P1139]
gi|402961186|gb|EJX78243.1| DNA gyrase, B subunit [Enterococcus faecium P1123]
gi|402962646|gb|EJX79566.1| DNA gyrase, B subunit [Enterococcus faecium ERV99]
gi|402967780|gb|EJX84306.1| DNA gyrase, B subunit [Enterococcus faecium ERV69]
gi|402970149|gb|EJX86510.1| DNA gyrase, B subunit [Enterococcus faecium ERV38]
gi|402973448|gb|EJX89575.1| DNA gyrase, B subunit [Enterococcus faecium ERV168]
gi|402978105|gb|EJX93869.1| DNA gyrase, B subunit [Enterococcus faecium ERV26]
gi|402981075|gb|EJX96629.1| DNA gyrase, B subunit [Enterococcus faecium ERV165]
gi|402983988|gb|EJX99326.1| DNA gyrase, B subunit [Enterococcus faecium ERV161]
gi|402985345|gb|EJY00562.1| DNA gyrase, B subunit [Enterococcus faecium ERV102]
gi|402992806|gb|EJY07473.1| DNA gyrase, B subunit [Enterococcus faecium ERV1]
gi|402992968|gb|EJY07621.1| DNA gyrase, B subunit [Enterococcus faecium E422]
gi|403000484|gb|EJY14601.1| DNA gyrase, B subunit [Enterococcus faecium E417]
gi|403006339|gb|EJY19990.1| DNA gyrase, B subunit [Enterococcus faecium C621]
gi|403007248|gb|EJY20838.1| DNA gyrase, B subunit [Enterococcus faecium C1904]
gi|403007980|gb|EJY21515.1| DNA gyrase, B subunit [Enterococcus faecium C497]
gi|403009200|gb|EJY22663.1| DNA gyrase, B subunit [Enterococcus faecium 515]
gi|403012980|gb|EJY26130.1| DNA gyrase, B subunit [Enterococcus faecium 513]
gi|403020060|gb|EJY32620.1| DNA gyrase, B subunit [Enterococcus faecium 514]
gi|403022573|gb|EJY34930.1| DNA gyrase, B subunit [Enterococcus faecium 510]
gi|403023309|gb|EJY35582.1| DNA gyrase, B subunit [Enterococcus faecium 509]
gi|403028096|gb|EJY39937.1| DNA gyrase, B subunit [Enterococcus faecium 511]
gi|403030615|gb|EJY42292.1| DNA gyrase, B subunit [Enterococcus faecium 506]
gi|403036327|gb|EJY47678.1| DNA gyrase, B subunit [Enterococcus faecium 505]
gi|403038090|gb|EJY49328.1| DNA gyrase, B subunit [Enterococcus faecium 503]
gi|403040679|gb|EJY51739.1| DNA gyrase, B subunit [Enterococcus faecium 504]
gi|404454195|gb|EKA01156.1| DNA gyrase subunit B [Enterococcus sp. GMD4E]
gi|404470572|gb|EKA15193.1| DNA gyrase subunit B [Enterococcus sp. GMD1E]
gi|425722632|gb|EKU85526.1| DNA gyrase subunit B [Enterococcus durans FB129-CNAB-4]
gi|430439172|gb|ELA49544.1| DNA gyrase subunit B [Enterococcus faecium E0045]
gi|430442312|gb|ELA52357.1| DNA gyrase subunit B [Enterococcus faecium E0120]
gi|430445014|gb|ELA54804.1| DNA gyrase subunit B [Enterococcus faecium E0164]
gi|430480407|gb|ELA57581.1| DNA gyrase subunit B [Enterococcus faecium E0333]
gi|430483252|gb|ELA60346.1| DNA gyrase subunit B [Enterococcus faecium E0269]
gi|430484988|gb|ELA61935.1| DNA gyrase subunit B [Enterococcus faecium E0679]
gi|430488450|gb|ELA65121.1| DNA gyrase subunit B [Enterococcus faecium E0680]
gi|430490710|gb|ELA67206.1| DNA gyrase subunit B [Enterococcus faecium E0688]
gi|430492970|gb|ELA69306.1| DNA gyrase subunit B [Enterococcus faecium E1007]
gi|430498055|gb|ELA74063.1| DNA gyrase subunit B [Enterococcus faecium E1050]
gi|430535006|gb|ELA75429.1| DNA gyrase subunit B [Enterococcus faecium E1185]
gi|430535830|gb|ELA76227.1| DNA gyrase subunit B [Enterococcus faecium E1133]
gi|430541155|gb|ELA81332.1| DNA gyrase subunit B [Enterococcus faecium E1258]
gi|430544573|gb|ELA84602.1| DNA gyrase subunit B [Enterococcus faecium E1552]
gi|430546368|gb|ELA86330.1| DNA gyrase subunit B [Enterococcus faecium E1392]
gi|430550212|gb|ELA90009.1| DNA gyrase subunit B [Enterococcus faecium E1573]
gi|430551475|gb|ELA91226.1| DNA gyrase subunit B [Enterococcus faecium E1574]
gi|430556025|gb|ELA95548.1| DNA gyrase subunit B [Enterococcus faecium E1575]
gi|430557356|gb|ELA96815.1| DNA gyrase subunit B [Enterococcus faecium E1576]
gi|430562857|gb|ELB02088.1| DNA gyrase subunit B [Enterococcus faecium E1590]
gi|430563350|gb|ELB02575.1| DNA gyrase subunit B [Enterococcus faecium E1578]
gi|430570449|gb|ELB09409.1| DNA gyrase subunit B [Enterococcus faecium E1620]
gi|430572917|gb|ELB11753.1| DNA gyrase subunit B [Enterococcus faecium E1622]
gi|430577756|gb|ELB16336.1| DNA gyrase subunit B [Enterococcus faecium E1623]
gi|430580237|gb|ELB18717.1| DNA gyrase subunit B [Enterococcus faecium E1626]
gi|430587329|gb|ELB25562.1| DNA gyrase subunit B [Enterococcus faecium E1634]
gi|430592020|gb|ELB30047.1| DNA gyrase subunit B [Enterococcus faecium E1861]
gi|430592176|gb|ELB30198.1| DNA gyrase subunit B [Enterococcus faecium E1731]
gi|430595710|gb|ELB33593.1| DNA gyrase subunit B [Enterococcus faecium E1904]
gi|430596667|gb|ELB34491.1| DNA gyrase subunit B [Enterococcus faecium E1972]
gi|430602963|gb|ELB40507.1| DNA gyrase subunit B [Enterococcus faecium E2039]
gi|430605971|gb|ELB43343.1| DNA gyrase subunit B [Enterococcus faecium E2071]
gi|430606661|gb|ELB44006.1| DNA gyrase subunit B [Enterococcus faecium E2134]
gi|430611477|gb|ELB48564.1| DNA gyrase subunit B [Enterococcus faecium E2297]
gi|430616134|gb|ELB53059.1| DNA gyrase subunit B [Enterococcus faecium E2883]
gi|430618519|gb|ELB55366.1| DNA gyrase subunit B [Enterococcus faecium E3083]
gi|430622974|gb|ELB59684.1| DNA gyrase subunit B [Enterococcus faecium E3548]
gi|430629857|gb|ELB66245.1| DNA gyrase subunit B [Enterococcus faecium E1321]
gi|430629935|gb|ELB66317.1| DNA gyrase subunit B [Enterococcus faecium E4215]
gi|430633837|gb|ELB69988.1| DNA gyrase subunit B [Enterococcus faecium E2369]
gi|430636944|gb|ELB72988.1| DNA gyrase subunit B [Enterococcus faecium E1644]
gi|430639153|gb|ELB75034.1| DNA gyrase subunit B [Enterococcus faecium E2560]
gi|430641348|gb|ELB77157.1| DNA gyrase subunit B [Enterococcus faecium E4389]
gi|430647079|gb|ELB82527.1| DNA gyrase subunit B [Enterococcus faecium E6012]
gi|430649837|gb|ELB85204.1| DNA gyrase subunit B [Enterococcus faecium E6045]
gi|445187235|gb|AGE28877.1| DNA gyrase subunit B [Enterococcus faecium NRRL B-2354]
Length = 648
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/507 (48%), Positives = 343/507 (67%), Gaps = 14/507 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L ++ DR GT + F PD ++FT +FD + +A RIRELAF
Sbjct: 149 YYQEYRRGAVVDDLKI----IEQTDRHGTTVHFTPDPEIFTETTEFDFSKLATRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I++ ED E+ NEY + GG++ YV++LN +K + + V + I +
Sbjct: 205 LNRGMRISI--EDKREEEPVINEYHYDGGIKSYVEYLNANKTVIFPEPVYLEGEQQDIAV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ +D Y ++ +AN+I T +GGTH G K +LTR +N +K K +K+ D +L+
Sbjct: 263 EVSMQY-TDGYHSNIMSFANNIHTYEGGTHESGFKTALTRVINDYARKQKLMKENDDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +IS++ P+P+FEGQTKT+LGN EVR V D+ E+ ++L +P V I
Sbjct: 322 GEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEHFMKFLLENPSVGRQI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A LAAKRAR++ R+K L S+LPGKLADCSS PE+ E+FIVEGDSAGGS
Sbjct: 382 VEKGLLASRARLAAKRAREVTRRKGALEISNLPGKLADCSSNDPEKCELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILP+RGKILNVE+ + NEEI++L A+G G GEDF RYH
Sbjct: 442 AKQGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GEDFDVSKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD--- 418
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PPLY V++GK + Y
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQPPLYGVKQGKNITYVQPGKN 560
Query: 419 -DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ ELK+V +S P++ S+QR+KGLGEM QLWETT++P RM+ ++ ++DA A+ +
Sbjct: 561 AEEELKQVVASLPASPKPSVQRYKGLGEMDDHQLWETTMDPSNRMMARVSVDDAIAADQI 620
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
F LMG RV+ R+ I+ A+ V NLD
Sbjct: 621 FEMLMGDRVEPRRAFIEENAHYVKNLD 647
>gi|425737844|ref|ZP_18856114.1| DNA gyrase subunit B [Staphylococcus massiliensis S46]
gi|425480997|gb|EKU48159.1| DNA gyrase subunit B [Staphylococcus massiliensis S46]
Length = 639
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 248/505 (49%), Positives = 332/505 (65%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + GT IRF D ++F + + T+ RIRELAF
Sbjct: 145 YHQAYKKGVPQFDLK----EIGDTSLNGTTIRFKADPEIFQETTTYQYETLQNRIRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN ++I L+ E + E+ + GG++ YV LN +K PLH+ V R+DV+
Sbjct: 201 LNKGISITLKDEREEEEREDNYY--YEGGIKSYVDLLNENKDPLHESPIYVHEQREDVE- 257
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+++ALQ+ + Y+ +L YAN+I T +GGTH +G K +LTR LNS G+K++ +K+
Sbjct: 258 --VEIALQY-NRGYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGQKNRLLKEDKE 314
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
L+GE REGLT I+S++ +P+FEGQTKT+LGN EVR++VD+ E +L +P V
Sbjct: 315 RLTGEDTREGLTAIVSIKHGDPQFEGQTKTKLGNSEVRQIVDRVFSELFERFLMENPQVG 374
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K L A +A +AAK+AR++ R+KS L S+LPGKLADCSS P ESEIF+VEGDSA
Sbjct: 375 KIIVEKGLMASRARIAAKKAREVTRRKSGLEVSNLPGKLADCSSKDPSESEIFLVEGDSA 434
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGS K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GEDF
Sbjct: 435 GGSTKLGRDSRTQAILPLRGKILNVEKSRLDKILNNNEIRMMITAFGTGI-GEDFDISKA 493
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G IY+ PPLYK+ +GKQ Y ++
Sbjct: 494 RYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLVEAGYIYIAQPPLYKLTQGKQKYYVFN 553
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D EL K+KS +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA EA+ F
Sbjct: 554 DRELDKLKSELKPTPKWSIARYKGLGEMDADQLWETTMNPEHRSMLQVKLEDAIEADQTF 613
Query: 479 SSLMGARVDTRKELIQNAANLVNLD 503
LMG V+ R++ I++ A NLD
Sbjct: 614 EMLMGDIVENRRQFIEDNAVYANLD 638
>gi|424845289|ref|ZP_18269900.1| DNA gyrase, B subunit [Jonquetella anthropi DSM 22815]
gi|363986727|gb|EHM13557.1| DNA gyrase, B subunit [Jonquetella anthropi DSM 22815]
Length = 640
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/508 (48%), Positives = 347/508 (68%), Gaps = 21/508 (4%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY Q+Y RG PV L LP R+GTR+RF D Q+F +Q+ T+ R RE+A
Sbjct: 147 EYFQRYERGIPVAPL-AKTLP---STRRGTRVRFLADSQIFDE-VQYSAETLVSRFREMA 201
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVD 117
FL P LTI + D + + + GG+ E+V++LN D+ L V G R D
Sbjct: 202 FLIPGLTITV----EDQREGKTWTFCEEGGIAEFVRYLNRDRVVLFPEPLVVSGER---D 254
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G+++++A Q+ +D Y++ + +AN I T++GGTH+ G++++LTR +N +++ +++KD
Sbjct: 255 GVSVEMAFQY-TDDYNERLFSFANLIHTVEGGTHVAGLRSALTRAVNEGARRAGALREKD 313
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+LSGE +REGLTC++SV++ NP+FEGQTKT+LGN V+ VD + + L + +
Sbjct: 314 ENLSGEDLREGLTCVVSVKLSNPQFEGQTKTKLGNGTVKGSVDSVIYDGLLGHFDEDSSA 373
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
L I+ K++ A +A AAK+AR+LVR KS + SLPGKLADCSS EE E++IVEGDS
Sbjct: 374 LKPIVDKAVKARQAREAAKKARELVR-KSAMSGLSLPGKLADCSSKKAEECEVYIVEGDS 432
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDR FQAILPLRGKILNVE+ + ++EI+ +I+ALG G+ G++F
Sbjct: 433 AGGSAKQGRDRSFQAILPLRGKILNVEKARLDKILSSKEIRVIIQALGCGI-GDEFDLSK 491
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHKIII+TDADVDGAHI TLLLTFF+R+ K L +EG +Y+ VPPLY+V+ GK+V Y Y
Sbjct: 492 LRYHKIIIMTDADVDGAHISTLLLTFFFRHMKELVEEGHVYLAVPPLYRVQSGKKVDYLY 551
Query: 418 DDAELKKVKSSFPSNALY-SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
D +L+ + S+ ++QR+KGLGEM P QLWETT++P R+LK++ ++DA A+
Sbjct: 552 SDRQLRTLMDSYEVEGKSPAVQRYKGLGEMNPEQLWETTMDPATRLLKRIQVDDAIAADE 611
Query: 477 VFSSLMGARVDTRKELIQNAANLV-NLD 503
FS LMG +V+ R++ IQ A+ V NLD
Sbjct: 612 YFSILMGDKVEPRRDFIQTHAHEVRNLD 639
>gi|187934052|ref|YP_001884271.1| DNA gyrase subunit B [Clostridium botulinum B str. Eklund 17B]
gi|187722205|gb|ACD23426.1| DNA gyrase, B subunit [Clostridium botulinum B str. Eklund 17B]
Length = 635
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 243/504 (48%), Positives = 352/504 (69%), Gaps = 15/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+YS+GK + L + + + GT I F PD ++F + FD +T++ R+RELAF
Sbjct: 143 WKQEYSKGKVLYDLK----QIGNTEESGTTIYFKPDAEIFDEVL-FDFDTLSQRLRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
LN + I L +D E+N Y++ GG++ +V +LN +K PLH + + + D +T+
Sbjct: 198 LNKGINIKLIDSRNDREEN----YYYEGGIKSFVSYLNRNKTPLHPEPIYVEGIKDKVTV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+L LQ+ +D Y++ + +AN+I TI+GGTH+ G K +LTR N K+ +K+ D + S
Sbjct: 254 ELGLQY-NDGYTENLFSFANNIDTIEGGTHLVGFKTALTRAFNDYAKRFGFIKENDKNFS 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT +ISV++ +P+FEGQTKT+LGN EV+ +VD V EY+ +LE +P + I
Sbjct: 313 GDDIREGLTAVISVKIEDPQFEGQTKTKLGNSEVKGIVDSIVSEYIGIFLEENPGISKII 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AA++AR+L R KSVL ++LPGKLADCSS P E EI+IVEGDSAGGS
Sbjct: 373 IDKALMAARAREAARKARELTR-KSVLERTTLPGKLADCSSKDPRECEIYIVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQAILPLRGKI+NVE++ + +E I++++ A G G+ G+DF E +RY+
Sbjct: 432 AKQGRDRKFQAILPLRGKIMNVEKQRLDKILNSETIRSMVTAFGGGI-GKDFDIEKIRYN 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDADVDGAHIRTLLLTFFYRY + L ++G +Y+ PPL++V +GK+ Y Y D+E
Sbjct: 491 RIIIMTDADVDGAHIRTLLLTFFYRYMRELVEQGHVYIAQPPLFRVGKGKKEVYAYSDSE 550
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L +V + IQR+KGLGEM QLW+TT++P +R+L + IEDA A+ +F+
Sbjct: 551 LDQVLLDMGGKDTSVDIQRYKGLGEMNATQLWDTTMDPAKRILLKAEIEDAMAADEIFTI 610
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R+E I QNA N+VNLD
Sbjct: 611 LMGEKVEPRREFIEQNAKNVVNLD 634
>gi|260655480|ref|ZP_05860968.1| DNA gyrase, B subunit [Jonquetella anthropi E3_33 E1]
gi|260629928|gb|EEX48122.1| DNA gyrase, B subunit [Jonquetella anthropi E3_33 E1]
Length = 640
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/508 (48%), Positives = 347/508 (68%), Gaps = 21/508 (4%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY Q+Y RG PV L LP R+GTR+RF D Q+F +Q+ T+ R RE+A
Sbjct: 147 EYFQRYERGIPVAPL-AKTLP---STRRGTRVRFLADSQIFD-EVQYSAETLVSRFREMA 201
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVD 117
FL P LTI + D + + + GG+ E+V++LN D+ L V G R D
Sbjct: 202 FLIPGLTITV----EDQREGKTWTFCEEGGIAEFVRYLNRDRVVLFPEPLVVSGER---D 254
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G+++++A Q+ +D Y++ + +AN I T++GGTH+ G++++LTR +N +++ +++KD
Sbjct: 255 GVSVEMAFQY-TDDYNERLFSFANLIHTVEGGTHVAGLRSALTRAVNEGARRAGALREKD 313
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+LSGE +REGLTC++SV++ NP+FEGQTKT+LGN V+ VD + + L + +
Sbjct: 314 ENLSGEDLREGLTCVVSVKLSNPQFEGQTKTKLGNGTVKGSVDSVIYDGLLGHFDEDSSA 373
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
L I+ K++ A +A AAK+AR+LVR KS + SLPGKLADCSS EE E++IVEGDS
Sbjct: 374 LKPIVDKAVKARQAREAAKKARELVR-KSAMSGLSLPGKLADCSSKKAEECEVYIVEGDS 432
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDR FQAILPLRGKILNVE+ + ++EI+ +I+ALG G+ G++F
Sbjct: 433 AGGSAKQGRDRSFQAILPLRGKILNVEKARLDKILSSKEIRVIIQALGCGI-GDEFDLSK 491
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHKIII+TDADVDGAHI TLLLTFF+R+ K L +EG +Y+ VPPLY+V+ GK+V Y Y
Sbjct: 492 LRYHKIIIMTDADVDGAHISTLLLTFFFRHMKELVEEGHVYLAVPPLYRVQSGKKVDYLY 551
Query: 418 DDAELKKVKSSFPSNALY-SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
D +L+ + S+ ++QR+KGLGEM P QLWETT++P R+LK++ ++DA A+
Sbjct: 552 SDRQLRTLMDSYEVEGKSPAVQRYKGLGEMNPEQLWETTMDPATRLLKRIQVDDAIAADE 611
Query: 477 VFSSLMGARVDTRKELIQNAANLV-NLD 503
FS LMG +V+ R++ IQ A+ V NLD
Sbjct: 612 YFSILMGDKVEPRRDFIQTHAHEVRNLD 639
>gi|302340767|ref|YP_003805973.1| DNA gyrase subunit beta [Spirochaeta smaragdinae DSM 11293]
gi|301637952|gb|ADK83379.1| DNA gyrase, B subunit [Spirochaeta smaragdinae DSM 11293]
Length = 636
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 244/505 (48%), Positives = 347/505 (68%), Gaps = 13/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG P V V R GT RF PD ++F T ++F + ++ R+RELAF
Sbjct: 140 FYQKYDRGNP----EKDVATVGETTRHGTITRFKPDGEIFET-VEFSFDVLSRRLRELAF 194
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I + ED + + E+ F GG++ +V +L+ KKP+H + + F DGI +
Sbjct: 195 LNKGIRIII--EDERLPQKKTKEFQFEGGVKSFVSFLSESKKPIHKEPIYFEGIRDGIDL 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+ AL++ ++ YS+ + + N+I T +GGTH+ G K +LTRT N KKSK K D + S
Sbjct: 253 ECALEY-NEGYSENIFSFVNNINTREGGTHLVGFKTALTRTFNDFLKKSKFAKKMDETFS 311
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT ++SV+VP+P+FEGQTK +LGN EVR VV+ V E+LT Y E +P +++ I
Sbjct: 312 GDDVREGLTAVVSVKVPDPQFEGQTKAKLGNSEVRGVVESLVAEHLTYYFEENPKLIEKI 371
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K A +A +AA++ARDL R+KS L SSSLPGKLADC+ P +SE++IVEGDSAGGS
Sbjct: 372 LEKITMAARARIAARKARDLTRRKSALESSSLPGKLADCAEKDPSKSEVYIVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQAILPL GK+LNVE+ + N+++Q +I LG G G++F +RYH
Sbjct: 432 AKQGRDRQFQAILPLWGKMLNVEKTRADKVLTNDKLQPIIATLGAGA-GKEFDISKVRYH 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+ DADVDG+HIRTLLLTFF+RY L + G +Y+ +PPLYK++ GK + Y YD+ +
Sbjct: 491 KVIIMADADVDGSHIRTLLLTFFFRYMPELVERGYVYIAMPPLYKMQLGKSITYAYDERD 550
Query: 422 LKKVKSSFPSNAL--YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
+K+ S + +IQR+KGLGEM P QLWETT++P+ R + Q+ +EDA EA+ +FS
Sbjct: 551 REKIMKSLFAEETEKVAIQRYKGLGEMNPNQLWETTMDPDSRKIMQVRLEDAVEADQIFS 610
Query: 480 SLMGARVDTRKELIQNAANLV-NLD 503
+LMG V+ R++ I++ A +V NLD
Sbjct: 611 TLMGEDVEPRRKFIEDNALMVSNLD 635
>gi|189462935|ref|ZP_03011720.1| hypothetical protein BACCOP_03637 [Bacteroides coprocola DSM 17136]
gi|189430362|gb|EDU99346.1| DNA gyrase, B subunit [Bacteroides coprocola DSM 17136]
Length = 654
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 242/512 (47%), Positives = 334/512 (65%), Gaps = 17/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y+ GKP+ V V + D GTR FWPD +FTT ++ +N + R+RELA+
Sbjct: 148 HQQEYACGKPLYA----VKEVGTTDITGTRQTFWPDGSIFTTT-EYKYNILQARMRELAY 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAG--GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN +TI L + E + + F G++E+V++LN+ PL DV+ + GI
Sbjct: 203 LNKGITITLTDKREKEEDGSFKQEIFHSEEGVKEFVRFLNSTNTPLIDDVIYLNTEKQGI 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I+ A+ + + + + + Y N+I TI+GGTH G + +LTR L ++SK ++ +
Sbjct: 263 PIECAIMY-NTGFRENLHSYVNNINTIEGGTHEAGFRTALTRVLKKYAEESKALEKAKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SGE REGL +ISV+V P+FEGQTKT+LGN EV V+Q+V E LT YLE HP
Sbjct: 322 ISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNNEVSGAVNQAVGEALTYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A A +AA++AR+ V++KS + LPGKLADCSS T EE E+F+VEGDSAG
Sbjct: 382 TIVDKVVLAATARIAARKARESVQRKSPMGGGGLPGKLADCSSRTAEECELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKG-EDFKK- 355
GSAKQGR R+FQAILPLRGKILNVE+ ++++E+ N+I+ALG+ GV G ED KK
Sbjct: 442 GSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQALGVRFGVDGTEDSKKA 501
Query: 356 --EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV 413
+ LRYHK+II+TDADVDG+HI TL++T FYRY + G +Y+ PPLYK +GK
Sbjct: 502 NIDKLRYHKVIIMTDADVDGSHIDTLIMTLFYRYMPEVIQGGHLYIANPPLYKCSKGKIS 561
Query: 414 QYCYDDAELKKVKSSFPSNALYSI--QRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
+YCY D E + + I QR+KGLGEM P QLWETT+NPE R+LKQ+ IE+A
Sbjct: 562 EYCYTDEERQAFMQKYGDGTETGIHTQRYKGLGEMNPEQLWETTMNPETRILKQVSIENA 621
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AEA+ +FS LMG V R+E I+ A N+D
Sbjct: 622 AEADYIFSMLMGDDVAPRREFIEKHATYANID 653
>gi|259047900|ref|ZP_05738301.1| DNA gyrase, B subunit [Granulicatella adiacens ATCC 49175]
gi|259035577|gb|EEW36832.1| DNA gyrase, B subunit [Granulicatella adiacens ATCC 49175]
Length = 645
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/506 (46%), Positives = 329/506 (65%), Gaps = 9/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y RG + L + + D+ GT + F PD ++F F+ + +A R+RELAF
Sbjct: 148 YEQSYKRGAVLEDLKI----IGTTDKHGTSVYFVPDPEIFQETTVFEFDKLANRVRELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L + + D PE+ + + GG++ YV+ LN K+ L + + + DGI +
Sbjct: 204 LNKGLKLTIT--DFRPEEPVRKSFCYEGGIKSYVEHLNKSKQVLFEEPIYVEGEQDGIQV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y +L + N+I T +GGTH G+K +LTR +N ++ K +K+ + LS
Sbjct: 262 EVAMQYTS-GYHTNLLSFTNNIHTYEGGTHESGMKTALTRVINDYARRQKLMKENEEKLS 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT ++S++ P+P+FEGQTKT+LGN E R + D+ + ++L +P V I
Sbjct: 321 GEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEARTITDRLFSTHFDKFLMENPQVARKI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA LAAKRAR++ R+KS L S+LPGKLADCSS P SE+FIVEGDSAGGS
Sbjct: 381 VEKGILASKARLAAKRAREVTRKKSGLEISNLPGKLADCSSNDPTISELFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 441 AKQGRSRHFQAILPIRGKILNVEKATLDKILANEEIRSLFTAMGTGFGG-DFDLSKARYQ 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDG+HIRTLL+T FYRY + + G IY+ PPLYK+++GK Y +D E
Sbjct: 500 KLVIMTDADVDGSHIRTLLITLFYRYMRPAVEAGYIYIAQPPLYKLKQGKNEYYIQNDKE 559
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ P++ + R+KGLGEM QLWETT+NPE R + Q+ +EDAAEA+ + L
Sbjct: 560 LEAKLKELPAHPKPQLSRYKGLGEMDAEQLWETTMNPENRSMLQVSVEDAAEADQILDIL 619
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RV+ R+E I++ A +N++ LDI
Sbjct: 620 MGDRVEPRREFIESNAKYINMEDLDI 645
>gi|160891431|ref|ZP_02072434.1| hypothetical protein BACUNI_03882 [Bacteroides uniformis ATCC 8492]
gi|270295441|ref|ZP_06201642.1| DNA gyrase, B subunit [Bacteroides sp. D20]
gi|423304784|ref|ZP_17282783.1| DNA gyrase, B subunit [Bacteroides uniformis CL03T00C23]
gi|156858838|gb|EDO52269.1| DNA gyrase, B subunit [Bacteroides uniformis ATCC 8492]
gi|270274688|gb|EFA20549.1| DNA gyrase, B subunit [Bacteroides sp. D20]
gi|392683448|gb|EIY76783.1| DNA gyrase, B subunit [Bacteroides uniformis CL03T00C23]
Length = 653
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 235/512 (45%), Positives = 350/512 (68%), Gaps = 18/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+YS G P+ + V V + D GTR +FWPD +FT + ++++ +A R+RELA+
Sbjct: 148 YQQEYSCGHPLYS----VKEVGTTDITGTRQQFWPDDTIFTETV-YNYDILATRMRELAY 202
Query: 63 LNPKLTIALRK-EDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKP-LHDVVGFRKDVDGI 119
LN + I+L D E N E F++ GL+E+V+++++ ++ ++DV+ + G
Sbjct: 203 LNAGIKISLTDLRVKDEEGNAKKEIFYSEEGLKEFVRYVDSSREHFMNDVIYINTEKQGT 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+ + + +Y++ + Y N+I TI+GGTH+ G + +LTRTL + +K ++ +
Sbjct: 263 PVEVAIMY-NTSYNENVHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDNKMLEKAKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
++G+ REGLT +IS++V P+FEGQTKT+LGN EV VDQ+V E LT YLE HP
Sbjct: 322 IAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEALTYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A +A +AA++AR+ V++KS + +PGKLADCSS PEE E+F+VEGDSAG
Sbjct: 382 LIVDKVILAAQARIAARKARESVQRKSPMSGGGMPGKLADCSSKDPEECELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFKK-- 355
GSAKQGR+R FQAILPLRGKILNVE+ ++++E+ N+I+ALG+ GV GED K+
Sbjct: 442 GSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQALGIRFGVDGEDSKEAN 501
Query: 356 -EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY KIII+TDADVDG+HI TL++T F+RY + +GC+Y+ PPLY +GK +
Sbjct: 502 IDKLRYKKIIIMTDADVDGSHIDTLIMTLFFRYFPQVIQQGCLYIATPPLYLCTKGKAKE 561
Query: 415 YCYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
YC+ D + +K ++ NA+++ QR+KGLGEM P QLWETT+NPE RMLKQ+ +E+A
Sbjct: 562 YCWTDQQRQKFIDTYGGGSENAVHT-QRYKGLGEMNPEQLWETTMNPENRMLKQVHLENA 620
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AEA+ +FS LMG V R++ I+ A N+D
Sbjct: 621 AEADYIFSMLMGEDVGPRRDFIEKNATYANID 652
>gi|317478438|ref|ZP_07937599.1| DNA gyrase, subunit B [Bacteroides sp. 4_1_36]
gi|316905397|gb|EFV27190.1| DNA gyrase, subunit B [Bacteroides sp. 4_1_36]
Length = 653
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 235/512 (45%), Positives = 350/512 (68%), Gaps = 18/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+YS G P+ + V V + D GTR +FWPD +FT + ++++ +A R+RELA+
Sbjct: 148 YQQEYSCGHPLYS----VKEVGTTDITGTRQQFWPDGTIFTETV-YNYDILATRMRELAY 202
Query: 63 LNPKLTIALRK-EDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKP-LHDVVGFRKDVDGI 119
LN + I+L D E N E F++ GL+E+V+++++ ++ ++DV+ + G
Sbjct: 203 LNAGIKISLTDLRVKDEEGNAKKEIFYSEEGLKEFVRYVDSSREHFMNDVIYINTEKQGT 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+ + + +Y++ + Y N+I TI+GGTH+ G + +LTRTL + +K ++ +
Sbjct: 263 PVEVAIMY-NTSYNENVHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDNKMLEKAKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
++G+ REGLT +IS++V P+FEGQTKT+LGN EV VDQ+V E LT YLE HP
Sbjct: 322 IAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEALTYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A +A +AA++AR+ V++KS + +PGKLADCSS PEE E+F+VEGDSAG
Sbjct: 382 LIVDKVILAAQARIAARKARESVQRKSPMSGGGMPGKLADCSSKDPEECELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFKK-- 355
GSAKQGR+R FQAILPLRGKILNVE+ ++++E+ N+I+ALG+ GV GED K+
Sbjct: 442 GSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQALGIRFGVDGEDSKEAN 501
Query: 356 -EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY KIII+TDADVDG+HI TL++T F+RY + +GC+Y+ PPLY +GK +
Sbjct: 502 IDKLRYKKIIIMTDADVDGSHIDTLIMTLFFRYFPQVIQQGCLYIATPPLYLCTKGKAKE 561
Query: 415 YCYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
YC+ D + +K ++ NA+++ QR+KGLGEM P QLWETT+NPE RMLKQ+ +E+A
Sbjct: 562 YCWTDQQRQKFIDTYGGGSENAVHT-QRYKGLGEMNPEQLWETTMNPENRMLKQVHLENA 620
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AEA+ +FS LMG V R++ I+ A N+D
Sbjct: 621 AEADYIFSMLMGEDVGPRRDFIEKNATYANID 652
>gi|432328169|ref|YP_007246313.1| DNA gyrase, B subunit [Aciduliprofundum sp. MAR08-339]
gi|432134878|gb|AGB04147.1| DNA gyrase, B subunit [Aciduliprofundum sp. MAR08-339]
Length = 643
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 253/518 (48%), Positives = 354/518 (68%), Gaps = 31/518 (5%)
Query: 3 YHQKYSRGKPVTTLTCHVLP--VDSKDR-------------QGTRIRFWPDKQVFTTAIQ 47
Y Q Y RGKP HV+ V+ + R +GT +RF PD ++F T +
Sbjct: 139 YFQWYVRGKP--QCDVHVVGEFVNGQVRWYEAGHEEHFKYPRGTYVRFKPDPEIFETT-E 195
Query: 48 FDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH 107
F + + ++R+LAFLN + I L D ++ + + GG+ E+V++LN LH
Sbjct: 196 FKYGIVKKKLRDLAFLNRGVEIEL----EDERTGKHEVFHYEGGIVEFVKFLNEGYNSLH 251
Query: 108 -DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSL 166
DV+ + DGI ++ ALQ+ +D+ S+ ++ + N+I T++GGTH+ G +++LT+ +N
Sbjct: 252 KDVIYGMDEQDGIIVEFALQY-NDSTSENLIAFVNTINTVEGGTHVSGFRSALTKAINDF 310
Query: 167 GKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEY 226
K +KD +SL GE VREGLT +I V+ PNP+FEGQTK +LGN EV+ VV V
Sbjct: 311 AKGKGMLKD--MSLQGEDVREGLTAVIHVKHPNPQFEGQTKAKLGNSEVKGVVFSVVNRI 368
Query: 227 LTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPE 286
L+ Y E HPDV +I++K+++A +A +AA++AR+L R+K+ L S LPGKLADC+S PE
Sbjct: 369 LSTYFEEHPDVATNIVTKAIAAARARIAARKARELARRKNYLESLDLPGKLADCTSEDPE 428
Query: 287 ESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL 346
E+E+FIVEGDSAGGSAKQ RDR FQAILPLRGKILNVE+ ++KN EI+ LI A+G
Sbjct: 429 EAELFIVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARIDKVFKNNEIRALISAIGT 488
Query: 347 GVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYK 406
GV+ EDF LRYHKIII+TDADVDGAHIRTLLLTFFYRY L + G +Y+ PLY+
Sbjct: 489 GVR-EDFDYSKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYMPELIERGHVYIAQAPLYR 547
Query: 407 VERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQL 466
++RGK++ Y Y D E +++ +P NA S+QRFKGLGEM P QLWETT++PE+R L ++
Sbjct: 548 IQRGKEIYYVYSDEEKEEMLKKYP-NA--SVQRFKGLGEMNPQQLWETTMDPEKRRLIRV 604
Query: 467 VIEDAAEANVVFSSLMGARVDTRKE-LIQNAANLVNLD 503
IEDAAEA+ +FS LMG V+ R+E +I++A ++N+D
Sbjct: 605 TIEDAAEADRLFSILMGEAVEPRREFIIEHAREVMNID 642
>gi|423310102|ref|ZP_17288086.1| DNA gyrase, B subunit [Bacteroides uniformis CL03T12C37]
gi|392682742|gb|EIY76084.1| DNA gyrase, B subunit [Bacteroides uniformis CL03T12C37]
Length = 653
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 235/512 (45%), Positives = 350/512 (68%), Gaps = 18/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+YS G P+ + V V + D GTR +FWPD +FT + ++++ +A R+RELA+
Sbjct: 148 YQQEYSCGHPLYS----VKEVGTTDITGTRQQFWPDDTIFTETV-YNYDILATRMRELAY 202
Query: 63 LNPKLTIALRK-EDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKP-LHDVVGFRKDVDGI 119
LN + I+L D E N E F++ GL+E+V+++++ ++ ++DV+ + G
Sbjct: 203 LNAGIKISLTDLRVKDEEGNAKKEIFYSEEGLKEFVRYVDSSREHFMNDVIYINTEKQGT 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+ + + +Y++ + Y N+I TI+GGTH+ G + +LTRTL + +K ++ +
Sbjct: 263 PVEVAIMY-NTSYNENVHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDNKMLEKAKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
++G+ REGLT +IS++V P+FEGQTKT+LGN EV VDQ+V E LT YLE HP
Sbjct: 322 IAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEALTYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A +A +AA++AR+ V++KS + +PGKLADCSS PEE E+F+VEGDSAG
Sbjct: 382 LIVDKVILAAQARIAARKARESVQRKSPMSGGGMPGKLADCSSKDPEECELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFKK-- 355
GSAKQGR+R FQAILPLRGKILNVE+ ++++E+ N+I+ALG+ GV GED K+
Sbjct: 442 GSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQALGIRFGVDGEDSKEAN 501
Query: 356 -EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY KIII+TDADVDG+HI TL++T F+RY + +GC+Y+ PPLY +GK +
Sbjct: 502 IDKLRYKKIIIMTDADVDGSHIDTLIMTLFFRYFPQVIQQGCLYIATPPLYLCTKGKAKE 561
Query: 415 YCYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
YC+ D + +K ++ NA+++ QR+KGLGEM P QLWETT+NPE RMLKQ+ +E+A
Sbjct: 562 YCWTDQQRQKFIDTYGGGSENAVHT-QRYKGLGEMNPEQLWETTMNPENRMLKQVHLENA 620
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AEA+ +FS LMG V R++ I+ A N+D
Sbjct: 621 AEADYIFSMLMGEDVGPRRDFIEKNATYANID 652
>gi|15672887|ref|NP_267061.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis Il1403]
gi|385830443|ref|YP_005868256.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis CV56]
gi|418038398|ref|ZP_12676730.1| DNA topoisomerase (ATP-hydrolyzing) [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|12723837|gb|AAK05003.1|AE006324_6 DNA gyrase subunit B [Lactococcus lactis subsp. lactis Il1403]
gi|326406451|gb|ADZ63522.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis CV56]
gi|354693409|gb|EHE93178.1| DNA topoisomerase (ATP-hydrolyzing) [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|374672965|dbj|BAL50856.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis IO-1]
Length = 651
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/508 (45%), Positives = 345/508 (67%), Gaps = 14/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG L + DR+GT + F PD ++FT ++FD + +A R+RELAF
Sbjct: 150 YYQEYHRGLVGDDLKI----IGETDRRGTTVHFVPDPEIFTETVEFDFDKLATRVRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I+L + EKN+ + + + GG++ YV++LN +K + + F + ++DGI +
Sbjct: 206 LNRGLRISLTDKREGNEKNEVH-FHYEGGIQSYVEYLNENKTVIFEPAIFTEGEMDGIAV 264
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y ++ +AN+I T +GGTH +G + +LTR +N+ K++K +K+ + +L+
Sbjct: 265 EVAMQY-TDTYHSVVMSFANNINTHEGGTHEQGFRTALTRVINNYAKQNKILKENEDNLT 323
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT +ISV+ PNP+FEGQTKT+LGN EV +V++ E LT ++ +P V I
Sbjct: 324 GDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVTGIVNKLFAEALTTFMLENPQVARKI 383
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS PE++E+FIVEGDSAGGS
Sbjct: 384 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNPEQTELFIVEGDSAGGS 443
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G D+ RYH
Sbjct: 444 AKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADYDLSKARYH 502
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PP+Y ++ G + + E
Sbjct: 503 KLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGIKVGSETKEYIQPGE 562
Query: 422 -----LKKVKSSFPSNALY-SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
L++ + + ++QR+KGLGEM QLW+TT++PE R++ ++ +EDAAEA+
Sbjct: 563 NQEKDLQEALARWAQGRTKPTVQRYKGLGEMDDHQLWDTTMDPEHRLMARVSVEDAAEAD 622
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+N A +D
Sbjct: 623 KIFDMLMGDRVEPRREFIENNAQYSTID 650
>gi|284161217|ref|YP_003399840.1| DNA gyrase subunit beta [Archaeoglobus profundus DSM 5631]
gi|284011214|gb|ADB57167.1| DNA gyrase, B subunit [Archaeoglobus profundus DSM 5631]
Length = 632
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 249/502 (49%), Positives = 332/502 (66%), Gaps = 19/502 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RGKPVT L V GT+IRF PD ++F +FD++ +A R+RELAF
Sbjct: 148 YYQRYERGKPVTPLKV----VGETKETGTKIRFKPDPEIFEVK-EFDYDVVAERLRELAF 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN L I L E + K Y+E G +V++LN K + DVV + +GI ++
Sbjct: 203 LNKGLRIKLIDERTGKVKEFYSEEGIVG----FVKYLNKGKDVITDVVYISGEKNGINVE 258
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+A Q+ ++ + + +L +AN+I TI+GGTH+ G +A LTR +N GKK VK K +SG
Sbjct: 259 IAFQFTNEDF-ENLLAFANNIHTIEGGTHVSGFRAGLTRAINEYGKKH--VK-KFTPISG 314
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+REGLT ++SV+VP P+FEGQTKT+L N +V+ VV+ V +LE HP I+
Sbjct: 315 SDIREGLTAVLSVKVPEPQFEGQTKTKLTNSDVKTVVESLVYNNFLRWLEEHPSEAQRII 374
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K L A+KA A+RAR+LV++K+ + S +LPGKLADCSS EE E+FIVEG+SAGGSA
Sbjct: 375 EKCLLAMKAREMARRARELVKRKAEI-SLTLPGKLADCSSKNVEERELFIVEGESAGGSA 433
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQ RDRRFQA+LP+RGKI+NVE+ KNEEI+ + A+G G+ G+DF +RY K
Sbjct: 434 KQARDRRFQAVLPIRGKIINVEKAGMLRALKNEEIKAIASAIGGGI-GKDFDLSKVRYGK 492
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
III+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ +PPLY+V++G +V Y Y + EL
Sbjct: 493 IIIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGMVYIALPPLYRVKKGDKVYYVYSEKEL 552
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
+ V +QRFKGLGEM P QLWET +NP+ R L ++ IEDA A +F LM
Sbjct: 553 RDVLKKIGKA---EVQRFKGLGEMNPEQLWETAMNPKTRKLVKVTIEDALIAEKMFRILM 609
Query: 483 GARVDTRKELIQNAANLV-NLD 503
G VD RKE I N A V NLD
Sbjct: 610 GENVDERKEFILNHAKEVKNLD 631
>gi|421858603|ref|ZP_16290868.1| type IIA topoisomerase [Paenibacillus popilliae ATCC 14706]
gi|410831899|dbj|GAC41305.1| type IIA topoisomerase [Paenibacillus popilliae ATCC 14706]
Length = 636
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 246/503 (48%), Positives = 336/503 (66%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG P L + D GT IRF PD + FT + +D+ T+ RIRELAF
Sbjct: 143 YQQEYRRGVPQYDLKV----LGDTDETGTTIRFKPDAETFTDTLVYDYETLISRIRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN + + L +D NQ + + GG+ E+V++LN +++ +H+ + D IT
Sbjct: 199 LNKGIEMVL----TDERTNQTEIFKYDGGIIEFVEYLNRNRERMHEPPIYVEGQKDYITC 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y++ + +AN+I T +GGTH G K++LTR +N +K +KD +LS
Sbjct: 255 EIALQY-NDSYTENIYSFANNIHTHEGGTHESGFKSALTRIINEYSRKMNLMKDNVSNLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT I+SV++P P+FEGQTKT+LGN EVR +V+ E L E+++ +P + +
Sbjct: 314 GDDVREGLTAIVSVKIPEPQFEGQTKTKLGNSEVRSIVESLFAERLMEFMDENPAISRKV 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A AA+RAR+L R+KS L SSLPGKLADCSS + E+FIVEGDSAGGS
Sbjct: 374 VEKGLQAARAREAARRARELTRRKSALEVSSLPGKLADCSSKDASQCELFIVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPL+GKILNVE+ + N EI+ +I ALG G+ GEDF E RYH
Sbjct: 434 AKQGRDRHFQAILPLKGKILNVEKSRLDKILSNAEIRAIITALGTGI-GEDFDLEKARYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPL+K+ER K V+Y +
Sbjct: 493 KIIIMTDADVDGAHIRTLLLTFFYRYMRKLIEAGYVYIAQPPLFKIERNKVVRYADSEKM 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
++ + F A ++QR+KGLGEM QLWETT++PE R + Q+ EDA A+ VF +L
Sbjct: 553 RDEIIAEFGEGAKVNVQRYKGLGEMNAEQLWETTMDPESRSMLQVSFEDAKMADEVFDTL 612
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG V+ R++ IQ A V NLD
Sbjct: 613 MGDNVEPRRDFIQRHAKFVKNLD 635
>gi|167629176|ref|YP_001679675.1| DNA gyrase, b subunit [Heliobacterium modesticaldum Ice1]
gi|167591916|gb|ABZ83664.1| DNA gyrase, b subunit [Heliobacterium modesticaldum Ice1]
Length = 641
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 238/503 (47%), Positives = 347/503 (68%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG + L V GT I F PD Q+F +++ ++T++ R+REL+F
Sbjct: 150 HEQHYERGVATSELRV----VGQSKETGTTIYFKPDPQIFD-ELEYSYDTLSHRLRELSF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L +D Q + + +GG+ ++V++LN +K +H+ V+ F+ + DG+ +
Sbjct: 205 LNRGVRITL----TDKRSGQESVFAHSGGIVDFVKFLNRNKDVIHNEVIYFQTEKDGVHV 260
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D Y + + YAN+I T +GGTH G K +LTR +N ++ +KD + +LS
Sbjct: 261 EVALQY-NDGYVENLFSYANNINTQEGGTHEAGFKTALTRVVNEYARRLNQLKDNENNLS 319
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REG+T +ISV+V P+FEGQTKT+LGN EVR ++D V E + YLE HP + I
Sbjct: 320 GEDIREGITAVISVKVREPQFEGQTKTKLGNSEVRGIIDSCVTEGVGTYLEEHPSIAKRI 379
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ A++A AA++AR+L R+K+ L S+SLPGKLADCS P E+++VEGDSAGGS
Sbjct: 380 IEKAIGAMRAREAARKARELTRRKTALESTSLPGKLADCSFKDPSLCELYLVEGDSAGGS 439
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILNVE+ + NEEI+ +I A+G G+ GEDF RYH
Sbjct: 440 AKQGRDRRFQAILPLRGKILNVEKSRLDKVLSNEEIRAIITAMGTGI-GEDFDLSKARYH 498
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+I ++TDADVDG+HIRTLLLTFFYR+ K L + G +Y+ PPLY+V++ + V+Y Y D E
Sbjct: 499 RICLMTDADVDGSHIRTLLLTFFYRHMKPLIENGYVYIAQPPLYQVKKNRDVRYFYHDNE 558
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + + + +IQR+KGLGEM P QLWETT++P+ R + Q+ +EDAAEA ++F++L
Sbjct: 559 LNRYLEKTGRDGV-TIQRYKGLGEMNPEQLWETTMDPKNRTILQVSLEDAAEAELIFTTL 617
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG RV+ R++ IQ +A ++ NLD
Sbjct: 618 MGDRVEPRRDFIQSHAKDVRNLD 640
>gi|374992786|ref|YP_004968285.1| DNA gyrase subunit B [Desulfosporosinus orientis DSM 765]
gi|357211152|gb|AET65770.1| DNA gyrase, B subunit [Desulfosporosinus orientis DSM 765]
Length = 644
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 239/503 (47%), Positives = 344/503 (68%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y++GKP T L + + + GT+I F PD ++F + +D + +A R+REL+F
Sbjct: 153 YRQEYAKGKPTTEL----MNIGTTKTNGTKITFLPDSEIFEIKV-YDFDILAHRLRELSF 207
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN +TI L+ E + E+ + AGG++++V +LN K LH + D + +
Sbjct: 208 LNKNITIILKDERTSVEET----FVHAGGIQDFVLYLNNSKDCLHSQPIYIETTKDNVQV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ +Q+ +D+Y++ + YAN+I T +GGTH G K++LTR +N +K+ +K D +LS
Sbjct: 264 EVCIQY-NDSYTENLFSYANNINTQEGGTHEAGFKSALTRVINDYARKNNMLKPTDSNLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT +ISV+VP+P+FEGQTKT+LGN E+R +VD + E L+ +LE +P +
Sbjct: 323 GDDIREGLTAVISVKVPDPQFEGQTKTKLGNSEIRGIVDSATGEGLSIFLEENPAIARKF 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KS+ A +A AA++AR+L R+KS L +SLPGKLADCS P+ E++IVEGDSAGGS
Sbjct: 383 IEKSVQAARARDAARKARELTRRKSALEGTSLPGKLADCSWKEPDLCEMYIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILNVE+ + N EI+ +I A+G G+ +DF RYH
Sbjct: 443 AKQGRDRRFQAILPLRGKILNVEKARLDKILGNAEIRAMITAMGTGIS-DDFDISKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLTFFYRY K L + IY+ PPL+KV++G+++QY Y D E
Sbjct: 502 KLIIMTDADVDGAHIRTLLLTFFYRYMKPLIENNFIYIAQPPLFKVKKGREIQYAYSDNE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L KV S + + IQR+KGLGEM P QLWETT++P +R + ++ +EDA +FS L
Sbjct: 562 LTKVLESIGRDKV-EIQRYKGLGEMNPEQLWETTMDPAKRTILRVTMEDAMRTESMFSVL 620
Query: 482 MGARVDTRKELIQN-AANLVNLD 503
MG +V+ R++ I A ++ NLD
Sbjct: 621 MGDKVEPRRDFINRYAKDVRNLD 643
>gi|431438001|ref|ZP_19513164.1| DNA gyrase subunit B [Enterococcus faecium E1630]
gi|431760030|ref|ZP_19548634.1| DNA gyrase subunit B [Enterococcus faecium E3346]
gi|430586836|gb|ELB25078.1| DNA gyrase subunit B [Enterococcus faecium E1630]
gi|430625299|gb|ELB61939.1| DNA gyrase subunit B [Enterococcus faecium E3346]
Length = 648
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/507 (47%), Positives = 342/507 (67%), Gaps = 14/507 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L ++ DR GT + F PD ++FT +FD + +A RIRELAF
Sbjct: 149 YYQEYRRGAVVDDLKI----IEQTDRHGTTVHFTPDPEIFTETTEFDFSKLATRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I++ ED E+ NEY + GG++ YV++LN +K + + V + I +
Sbjct: 205 LNRGMRISI--EDKREEETVINEYHYDGGIKSYVEYLNANKTVIFPEPVYLEGEQQDIAV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ +D Y ++ +AN+I T +GGTH G K +LTR +N +K K +K+ D +L+
Sbjct: 263 EVSMQY-TDGYHSNIMSFANNIHTYEGGTHESGFKTALTRVINDYARKQKLMKENDDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +IS++ P+P+FEGQTKT+LGN EVR V D+ E+ ++L +P V I
Sbjct: 322 GEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEHFMKFLLENPSVGRQI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A LAAKRAR++ R+K L S+LPGKLADCSS PE+ E+FIVEGDSAGGS
Sbjct: 382 VEKGLLASRARLAAKRAREVTRRKGALEISNLPGKLADCSSNDPEKCELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILP+RGKILNVE+ + NEEI++L A+G G GE F RYH
Sbjct: 442 AKQGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GEAFDVSKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD--- 418
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PPLY V++GK + Y
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQPPLYGVKQGKNITYVQPGKN 560
Query: 419 -DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ ELK+V +S P++ S+QR+KGLGEM QLWETT++P RM+ ++ ++DA A+ +
Sbjct: 561 AEEELKQVVASLPASPKPSVQRYKGLGEMDDHQLWETTMDPSNRMMARVSVDDAIAADQI 620
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
F LMG RV+ R+ I+ A+ V NLD
Sbjct: 621 FEMLMGDRVEPRRAFIEENAHYVKNLD 647
>gi|170760652|ref|YP_001785341.1| DNA gyrase subunit B [Clostridium botulinum A3 str. Loch Maree]
gi|169407641|gb|ACA56052.1| DNA gyrase, B subunit [Clostridium botulinum A3 str. Loch Maree]
Length = 637
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 248/504 (49%), Positives = 351/504 (69%), Gaps = 14/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ QK+ RG T L V + GT+I F PD ++F ++F+++T+A R+RELAF
Sbjct: 144 WKQKFERGITKTGLDI----VGDTEDHGTKIYFKPDIEIFD-ELEFEYDTLAQRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN + I+L E D ++ + + GGL +V +LN +K+ LH + K+ DG +
Sbjct: 199 LNKGIKISLTDERYDKKEM----FHYEGGLRSFVLYLNRNKEKLHQQPIYVDKNKDGCIV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y++ + +AN+I TI+GGTH+ G K++LTR +N +K +KD D +LS
Sbjct: 255 EIAMQY-NDGYAENIFSFANNIDTIEGGTHLAGFKSALTRAINDYARKFNYLKDIDKNLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT +ISV++ +P+FEGQTKT+LGN EVR +VD V E + +LE +P+V I
Sbjct: 314 GDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDTIVGESIGSFLEENPNVGKII 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K LSA +A AAKRAR+L R+KSVL S+SLPGKLADCSS P EI++VEGDSAGGS
Sbjct: 374 IEKGLSASRAREAAKRARELTRRKSVLESTSLPGKLADCSSKDPSLCEIYLVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILPL+GKI+NVE++ + ++EI+ +I A G G+ G++F + +RY+
Sbjct: 434 AKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITAFGAGI-GKEFDIDKIRYN 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDADVDGAHIRTLLLTFFYRY K L +EG +Y+ PPLY++ + K+ Y Y D E
Sbjct: 493 RIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHVYIAQPPLYRIFKAKKEIYVYSDPE 552
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L + + +IQR+KGLGEM P QLW+TT+NPE R L Q+ IEDA A+ +F+
Sbjct: 553 LDEALLELGGKDTNTNIQRYKGLGEMNPEQLWDTTMNPEHRTLLQVTIEDAMAADEIFTI 612
Query: 481 LMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+E I+ NA +VNLD
Sbjct: 613 LMGTKVEPRREFIEDNADKVVNLD 636
>gi|431380558|ref|ZP_19510939.1| DNA gyrase subunit B [Enterococcus faecium E1627]
gi|430582426|gb|ELB20853.1| DNA gyrase subunit B [Enterococcus faecium E1627]
Length = 647
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 242/507 (47%), Positives = 342/507 (67%), Gaps = 15/507 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L ++ DR GT + F PD ++FT +FD + +A RIRELAF
Sbjct: 149 YYQEYRRGAVVDDLKI----IEQTDRHGTTVHFTPDPEIFTETTEFDFSKLATRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I++ + +P NEY + GG++ YV++LN +K + + V + I +
Sbjct: 205 LNRGMRISIEDKREEP---VINEYHYDGGIKSYVEYLNANKTVIFPEPVYLEGEQQDIAV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ +D Y ++ +AN+I T +GGTH G K +LTR +N +K K +K+ D +L+
Sbjct: 262 EVSMQY-TDGYHSNIMSFANNIHTYEGGTHESGFKTALTRVINDYARKQKLMKENDDNLT 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +IS++ P+P+FEGQTKT+LGN EVR V D+ E+ ++L +P V I
Sbjct: 321 GEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEHFMKFLLENPSVGRQI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A LAAKRAR++ R+K L S+LPGKLADCSS PE+ E+FIVEGDSAGGS
Sbjct: 381 VEKGLLASRARLAAKRAREVTRRKGALEISNLPGKLADCSSNDPEKCELFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILP+RGKILNVE+ + NEEI++L A+G G GEDF RYH
Sbjct: 441 AKQGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GEDFDVSKARYH 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD--- 418
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PPLY V++GK + Y
Sbjct: 500 KLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQPPLYGVKQGKNITYVQPGKN 559
Query: 419 -DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ ELK+V +S P++ S+QR+KGLGEM QLWETT++P RM+ ++ ++DA A+ +
Sbjct: 560 AEEELKQVVASLPASPKPSVQRYKGLGEMDDHQLWETTMDPSNRMMARVSVDDAIAADQI 619
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
F LMG RV+ R+ I+ A+ V NLD
Sbjct: 620 FEMLMGDRVEPRRAFIEENAHYVKNLD 646
>gi|281411537|ref|YP_003345616.1| DNA gyrase, B subunit [Thermotoga naphthophila RKU-10]
gi|281372640|gb|ADA66202.1| DNA gyrase, B subunit [Thermotoga naphthophila RKU-10]
Length = 636
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/513 (47%), Positives = 351/513 (68%), Gaps = 23/513 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGKPVT + + D+ GT +RF PD +F+ +FD + + R+RE+AF
Sbjct: 139 YRQRYERGKPVTPVEV----IGETDKHGTIVRFKPDPLIFSET-EFDPDVLEHRLREIAF 193
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-------- 114
L P L I E D + + F GG+ EYV++LN KK HDV+ ++
Sbjct: 194 LVPGLKI----EFEDRINGEKKTFKFDGGIVEYVKYLNRGKKVFHDVIYMKRTEKVQTKN 249
Query: 115 DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK 174
D + +++A Q+ +D+YS+ ++ +AN+I+T+DGGTH+ K LTR +N GKK +K
Sbjct: 250 GEDEVIVEIAFQY-TDSYSEDIVSFANTIKTVDGGTHVTAFKTMLTRLMNEYGKKHGFLK 308
Query: 175 DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELH 234
D S GE VREGLT ++SV V NPEFEGQTK++LGN EV++ +++ +++ L + + +
Sbjct: 309 GDD-SFQGEDVREGLTAVVSVYVKNPEFEGQTKSKLGNEEVKEAINRVMRDELKKIFDAN 367
Query: 235 PDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVE 294
P+++ +ILSK +S +A AA+RAR++VR+K+VL++++LPGKLADCSST E++E+FIVE
Sbjct: 368 PELVKTILSKIMSTKQAREAARRAREMVRRKNVLQNTTLPGKLADCSSTDREKTELFIVE 427
Query: 295 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 354
GDSAGGSAKQ RDR FQA+LP+RGKILNVE+ + KNE+I ++I A+G G+ G+DF
Sbjct: 428 GDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDKLLKNEQISDIIVAVGTGI-GDDFD 486
Query: 355 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY +III+TDAD+DGAHIRTLLLT FYRY + L ++G +Y+ +PPLY+++ GK+
Sbjct: 487 EGKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPPLYRIKAGKEEF 546
Query: 415 YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
Y Y D EL + K + IQR+KGLGEM P QLWETT+NPE R + ++ IEDA EA
Sbjct: 547 YVYSDLELMEYKEKLQGKRI-EIQRYKGLGEMNPEQLWETTMNPETRKIIRVTIEDAEEA 605
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ +F LMG +R+E I+ A + + LDI
Sbjct: 606 DRLFEILMGNDPSSRREFIERHA--LKVKELDI 636
>gi|295106380|emb|CBL03923.1| DNA gyrase subunit B [Gordonibacter pamelaeae 7-10-1-b]
Length = 656
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 239/492 (48%), Positives = 329/492 (66%), Gaps = 16/492 (3%)
Query: 29 QGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYN---- 84
GT + FWPD +FT +D++T+A R RE+AFLN L I L E +P +
Sbjct: 168 NGTTVTFWPDPTIFTDTTVYDYDTLASRFREMAFLNKGLKIILHDERVNPGSTLSDLAPE 227
Query: 85 ---EYF-FAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYA 140
E F +AGG+ ++V++LN K+ L+ + F + D T+++A+QW S +++++ +A
Sbjct: 228 PRTEVFQYAGGIVDFVKFLNEGKETLNKPIYFEAENDDGTVEVAMQWSSSYSTNSVMAFA 287
Query: 141 NSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP 200
N+I T +GGTH++G K ++TRT+N + +K+KD +LSG+ REG IISV++ +P
Sbjct: 288 NNINTHEGGTHLDGFKQAVTRTINEYARAKGILKEKDSNLSGDDTREGCAAIISVKLHDP 347
Query: 201 EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARD 260
+FEGQTKT+LGN E+R +V +V + L EYLE +P I+ K+ ALKA AA++AR+
Sbjct: 348 QFEGQTKTKLGNTEIRPLVQNAVTQGLAEYLEENPKPAKRIIDKATQALKAREAARKARE 407
Query: 261 LVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKI 320
+ R+K VL S +LPGKLADCSS TP +SEIFIVEGDSAGGSAKQ RDR+ QAILPLRGKI
Sbjct: 408 MTRRKGVLDSFALPGKLADCSSKTPADSEIFIVEGDSAGGSAKQARDRKTQAILPLRGKI 467
Query: 321 LNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLL 380
LNVER ++ I +LI A+G + G+DF + RYH+III+TDADVDGAHIR LL
Sbjct: 468 LNVERAGLHRSLSSDTISSLITAIGTNI-GDDFDADQARYHRIIIMTDADVDGAHIRCLL 526
Query: 381 LTFFYRYQKTLFDEGCIYVGVPPLY----KVERGKQVQ-YCYDDAELKKVKSSFPSNALY 435
LTFFYRY L + G IY+ PP++ K R +++ Y YD++ L V + + + +
Sbjct: 527 LTFFYRYMPELINRGYIYIAQPPIFGLKKKNSRSPKIERYIYDESALGSVLAEYDNPDKF 586
Query: 436 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQN 495
+QR+KGLGEM P QLWETT+ PE R L Q+ I+DAAEA V S LMG +V+ RKE IQ
Sbjct: 587 DVQRYKGLGEMDPDQLWETTMEPETRTLLQVNIDDAAEAERVVSELMGDQVEPRKEFIQK 646
Query: 496 AANLVNLDHLDI 507
A V LDI
Sbjct: 647 HARDVRF--LDI 656
>gi|297616219|ref|YP_003701378.1| DNA gyrase subunit beta [Syntrophothermus lipocalidus DSM 12680]
gi|297144056|gb|ADI00813.1| DNA gyrase, B subunit [Syntrophothermus lipocalidus DSM 12680]
Length = 636
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 246/503 (48%), Positives = 345/503 (68%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ+Y RGKPVT L + GT+I F PD ++F I F I R+REL++
Sbjct: 145 YHQRYERGKPVTPLAV----TGACQTTGTKITFSPDPEIFE-EICFSAEIIGQRLRELSY 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN I L D + EY+ GG+ ++V++L+ +++PL + + FR +G +
Sbjct: 200 LNQGTRIVL----CDKRTGRDVEYYHTGGIRDFVKYLSKNREPLSPEPIYFRIGKEGTVV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y++T+L YAN+I T +GGTH G K LTR +N KK +K+ + +L
Sbjct: 256 EVAIQYNT-GYTETLLSYANNIHTQEGGTHELGFKNGLTRVVNEYAKKQGMLKENEGNLL 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REG+T +ISV V +P+FEGQTKT+LGN +R +V+ +V +++ + + +P + I
Sbjct: 315 GEDIREGMTAVISVLVQDPQFEGQTKTKLGNAFIRSLVEGAVSDFVGAFFDENPSLAKKI 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+++A +A AA++AR+L R+K++L S+SLPGKLADCS P SE+++VEGDSAGGS
Sbjct: 375 VEKAIAARRAREAARKARELTRRKNLLDSTSLPGKLADCSEKDPALSELYLVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + NEEI+ LI A+G G+ GEDF RYH
Sbjct: 435 AKQGRDRNFQAILPLRGKILNVEKARLDKVLSNEEIRALITAIGTGI-GEDFDINKARYH 493
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
++II+TDADVDG+HIR LLLTFFYRY + L + G +YV PPLY+++RGK+V Y Y+D E
Sbjct: 494 RLIIMTDADVDGSHIRVLLLTFFYRYMRPLIEAGYVYVAQPPLYELKRGKEVHYIYNDRE 553
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ N Y ++R+KGLGEM P QLWETT+NPE R L Q+ IEDA A+V+FSSL
Sbjct: 554 LQRFLEQ-QGNKKYGVKRYKGLGEMNPEQLWETTMNPENRTLLQVRIEDAIAADVIFSSL 612
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R+E IQ A LV NLD
Sbjct: 613 MGEKVEPRREFIQENARLVTNLD 635
>gi|257789784|ref|YP_003180390.1| DNA gyrase subunit B [Eggerthella lenta DSM 2243]
gi|317489247|ref|ZP_07947764.1| DNA gyrase, subunit B [Eggerthella sp. 1_3_56FAA]
gi|325832276|ref|ZP_08165275.1| DNA gyrase, B subunit [Eggerthella sp. HGA1]
gi|257473681|gb|ACV54001.1| DNA gyrase, B subunit [Eggerthella lenta DSM 2243]
gi|316911648|gb|EFV33240.1| DNA gyrase, subunit B [Eggerthella sp. 1_3_56FAA]
gi|325486112|gb|EGC88566.1| DNA gyrase, B subunit [Eggerthella sp. HGA1]
Length = 648
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 244/513 (47%), Positives = 337/513 (65%), Gaps = 13/513 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY + GK L V P +K GT + FWPD ++FT +D +T+A R RE+A
Sbjct: 142 EYFIGFDHGKTSEKLR-EVGP--TKRGNGTTVSFWPDPEIFTETTVYDFDTLANRFREMA 198
Query: 62 FLNPKLTIALRKED-SDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGI 119
FLN L I L E +D + E F +AGG+ ++V++LN K+ L+ + F + D
Sbjct: 199 FLNKGLKIVLYDERVTDADGKPRTEVFQYAGGIVDFVKFLNEGKETLNKPIYFEAENDDG 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
T+++A+QW + +++++ +AN+I T +GGTH++G K ++TRT+N + +K+KD +
Sbjct: 259 TVEVAMQWSTSYSTNSVMAFANNINTHEGGTHLDGFKQAVTRTINEYARSKGILKEKDSN 318
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSG+ REG I+SV++ +P+FEGQTKT+LGN E+R +V +V + L EYLE +P
Sbjct: 319 LSGDDTREGCAAIVSVKLHDPQFEGQTKTKLGNTEIRPLVQNAVTQGLAEYLEENPTPAK 378
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K+ ALKA AA++AR++ R+K VL S +LPGKLADCSS TPE SE+FIVEGDSAG
Sbjct: 379 RIIGKATQALKAREAARKAREMTRRKGVLDSFALPGKLADCSSKTPENSELFIVEGDSAG 438
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQ RDR+ QAILPLRGKILNVER ++ I +LI A+G + G+DF + R
Sbjct: 439 GSAKQARDRKTQAILPLRGKILNVERAGLHRSLSSDTISSLITAIGTNI-GDDFDADQSR 497
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLY----KVERGKQVQ- 414
YH+III+TDADVDGAHIR LLLTFFYRY L + G IY+ PP++ K R +++
Sbjct: 498 YHRIIIMTDADVDGAHIRILLLTFFYRYMPELINRGYIYIAQPPIFGLKKKNSRSPKIER 557
Query: 415 YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
Y YD++ L V + + + +QR+KGLGEM P QLWETT+ P R L Q+ I+DAAEA
Sbjct: 558 YIYDESSLGSVLAEYDDPNKFDVQRYKGLGEMDPDQLWETTMEPATRTLLQVSIDDAAEA 617
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
V S LMG +V+ RKE IQ A V LDI
Sbjct: 618 ERVVSDLMGDQVEPRKEFIQKHARDVRF--LDI 648
>gi|293400051|ref|ZP_06644197.1| DNA gyrase, B subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|373453209|ref|ZP_09545105.1| DNA gyrase, B subunit [Eubacterium sp. 3_1_31]
gi|291306451|gb|EFE47694.1| DNA gyrase, B subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|371964048|gb|EHO81586.1| DNA gyrase, B subunit [Eubacterium sp. 3_1_31]
Length = 648
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 237/495 (47%), Positives = 335/495 (67%), Gaps = 12/495 (2%)
Query: 10 GKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTI 69
GK V +L + D+ G+ +RF D +FT +D T+ RIR+LAFLN + +
Sbjct: 164 GKAVESLKI----IGKTDKHGSMVRFKADPTIFTETQVYDFETLNTRIRQLAFLNKSIKL 219
Query: 70 ALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITIDLALQWC 128
L E + K Y + GG+ +YV++LN +K PLH+ V + + + DGI ++ALQ+
Sbjct: 220 ILTDEREEERKEIV--YKYDGGIRQYVEYLNQNKSPLHEEVVYVEGIEDGILAEIALQY- 276
Query: 129 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREG 188
+D Y + + N+I T +GGTH +G + +LTR +N+ +++ +K KD +L+G+ VREG
Sbjct: 277 NDGYVPNIYSFCNNINTAEGGTHEDGFRLALTRIVNAYARENGMIK-KDETLAGDDVREG 335
Query: 189 LTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSA 248
LT IISV+ P+P++EGQTKT+LGN EVRK+V + E L ++ +PD I+ K + A
Sbjct: 336 LTAIISVKHPDPQYEGQTKTKLGNSEVRKIVSSILGEQLEKFFLENPDTAKIIIDKCILA 395
Query: 249 LKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDR 308
KA +AAK+AR+L R+KS L SSLPGKLADCSS E EI+IVEGDSAGGSAKQGR+
Sbjct: 396 SKARMAAKKARELTRRKSALEISSLPGKLADCSSRDASECEIYIVEGDSAGGSAKQGRNS 455
Query: 309 RFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTD 368
+FQAILPLRGKILNVE+ +++N EI+++I A G G+ GE+ LRYHKIII+TD
Sbjct: 456 KFQAILPLRGKILNVEKARLHRIFENNEIRSMITAFGCGI-GEEMDISKLRYHKIIIMTD 514
Query: 369 ADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSS 428
ADVDGAHI TL+LTFFYR+ + + + G +Y+ +PPL+K+++G++++Y YD++ +V +
Sbjct: 515 ADVDGAHICTLMLTFFYRFLRPIIEGGYVYIAMPPLFKIQKGQRIEYVYDESSRDRVIAE 574
Query: 429 FPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDT 488
N SIQR+KGLGEM P QLWETT++P R LK++ I DA EA+ VF LMG V
Sbjct: 575 MGENV--SIQRYKGLGEMNPEQLWETTMDPAFRTLKKVNINDAMEADKVFEMLMGEEVGP 632
Query: 489 RKELIQNAANLVNLD 503
R+E IQ A LD
Sbjct: 633 RREFIQENAVYAELD 647
>gi|23097461|ref|NP_690927.1| DNA gyrase subunit B [Oceanobacillus iheyensis HTE831]
gi|22775684|dbj|BAC11962.1| DNA gyrase subunit B [Oceanobacillus iheyensis HTE831]
Length = 641
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/482 (47%), Positives = 330/482 (68%), Gaps = 6/482 (1%)
Query: 23 VDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQ 82
+ D GT F PD ++FT +++ +T+ R+RELAFLN L I++ + +D E+
Sbjct: 164 IGDTDITGTVTHFRPDTEIFTETTEYNFDTLEQRLRELAFLNKGLKISIEDKRTDREQVT 223
Query: 83 YNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANS 142
Y+ + GG+ YV+++N +K+ LH+ + GI++++A+Q+ +D ++ + +AN+
Sbjct: 224 YH---YEGGISSYVEFINKNKEVLHEPFFAEGEDQGISVEVAIQY-NDGFASNLYSFANN 279
Query: 143 IRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEF 202
I T +GG+H G ++ LTR +N KK+ +KD D +LSG+ VREG+T I+S++ P+P+F
Sbjct: 280 IHTYEGGSHEVGFRSGLTRIINDYAKKNGLIKDGDSNLSGDDVREGMTTIVSIKHPDPQF 339
Query: 203 EGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLV 262
EGQTKT+LGN EVR + D E +++L +P I+ K L A +A LAAK+AR+L
Sbjct: 340 EGQTKTKLGNSEVRAITDGVFSEAFSKFLYENPSTAKIIVEKGLMASRARLAAKKARELT 399
Query: 263 RQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILN 322
R+KS L S+LPGKLADCSS SE++IVEGDSAGGSAK GRDR FQAILPLRGKILN
Sbjct: 400 RRKSNLEISNLPGKLADCSSRDAAISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILN 459
Query: 323 VERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLT 382
VE+ + N E++ +I ALG GV GE+F RYHKI+I+TDADVDGAHIRTLLLT
Sbjct: 460 VEKARLDRILSNNEVRAMITALGSGV-GEEFDISKARYHKIVIMTDADVDGAHIRTLLLT 518
Query: 383 FFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKG 442
FFYRY + L ++G IY+ PPLY+V++GK V Y Y+D EL ++ + P +IQR+KG
Sbjct: 519 FFYRYMRPLIEQGYIYIAQPPLYQVKQGKTVNYAYNDKELDRILNEIPKAPKPNIQRYKG 578
Query: 443 LGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVN 501
LGEM QLW+TT++P+ R L Q+ + DA +A+ VF LMG +V+ R+ I +NA + N
Sbjct: 579 LGEMNADQLWDTTMDPDTRTLLQVELSDAIDADQVFDMLMGDKVEPRRIFIEENAQYVKN 638
Query: 502 LD 503
LD
Sbjct: 639 LD 640
>gi|295111747|emb|CBL28497.1| DNA gyrase subunit B [Synergistetes bacterium SGP1]
Length = 644
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 254/502 (50%), Positives = 336/502 (66%), Gaps = 19/502 (3%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
ME Q++ RG PVT L+ V PVD QGTRI + PDK++F + T+ R EL
Sbjct: 148 MERTQRFERGVPVTDLSEGV-PVDW---QGTRIHYLPDKEIFED-VHHSLETLKSRFMEL 202
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDV 116
AFLN + I + +D ++ EY F GG+ +VQ+LN D+ L + G R D
Sbjct: 203 AFLNAGVRIFV----TDERSSESREYHFEGGVSAFVQYLNRDRTTLFAPPVVISGERND- 257
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
I +D+ALQ+ +D Y + +L YAN I T++GGTH+ G++ +LTR LN + K + DK
Sbjct: 258 --IKVDMALQY-NDEYQERILTYANLIHTVEGGTHLMGLRQALTRALNEAARSGKLLNDK 314
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
+ +L+G+ ++EGLTC++SV++ P+FEGQTKT+LGN +VR VD V E L +E PD
Sbjct: 315 EDNLTGDDLKEGLTCVLSVKLVEPQFEGQTKTKLGNSDVRGAVDSVVYEGLLSVIEERPD 374
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
++ I+ K+L A +A AAK+A++LVR K + +LPGKLADCSS TPE SEI+IVEGD
Sbjct: 375 IVRPIVDKALRARRAREAAKKAKELVR-KGAMTGMNLPGKLADCSSKTPENSEIYIVEGD 433
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SAGGSAKQ RDR FQAILPLRGKILNVE+ E M +N EIQ +I ALG G+ G +F
Sbjct: 434 SAGGSAKQARDRTFQAILPLRGKILNVEKAQEHKMLQNREIQTIITALGCGI-GTEFNAT 492
Query: 357 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 416
LRYHKIII+TDADVDGAHI TLLLTFFYR+ L EG IY+ PPLY+V+RGKQV YC
Sbjct: 493 RLRYHKIIIMTDADVDGAHISTLLLTFFYRHMPELLTEGYIYLAQPPLYRVQRGKQVHYC 552
Query: 417 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
Y + EL++ P +QR+KGLGEM P QLW TT++P R+LK++ ++D A+
Sbjct: 553 YTEKELRQHVDGAPDPDKVGVQRYKGLGEMNPEQLWMTTMDPANRILKKVELDDDLLADE 612
Query: 477 VFSSLMGARVDTRKELIQNAAN 498
F LMG RV+ R+E I AN
Sbjct: 613 YFDILMGERVEPRREFITTNAN 634
>gi|260584261|ref|ZP_05852008.1| DNA gyrase, B subunit [Granulicatella elegans ATCC 700633]
gi|260157779|gb|EEW92848.1| DNA gyrase, B subunit [Granulicatella elegans ATCC 700633]
Length = 645
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 232/506 (45%), Positives = 329/506 (65%), Gaps = 9/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y RG + L V ++ GT + F PD ++F +D +A R+RELAF
Sbjct: 148 YEQSYKRGAVLEDLKI----VGQTEKHGTSVYFVPDPEIFQETTVYDFEKLANRVRELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L + + D E+ +++ GG++ YV+ LN K+ L + + + DGI +
Sbjct: 204 LNKGLKLTIT--DLRVEEPVVKTFYYEGGIKSYVEHLNKSKQVLFEEPIYVEGEQDGIQV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y +L + N+I T +GGTH G+K +LTR +N ++ K +K+ + LS
Sbjct: 262 EVAMQYTS-GYHTNLLSFTNNIHTYEGGTHESGMKTALTRVINDYARRQKLMKENEEKLS 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT ++S++ P+P+FEGQTKT+LGN E R + D+ + ++L +P V I
Sbjct: 321 GEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEARTITDRLFATHFDKFLMENPQVARKI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA LAAKRAR++ R+KS L S+LPGKLADCSS P SEIFIVEGDSAGGS
Sbjct: 381 VEKGILASKARLAAKRAREVTRKKSGLEISNLPGKLADCSSNDPSVSEIFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R FQAILP+RGKILNVE+ + N+EI++L A+G G G DF RYH
Sbjct: 441 AKQGRSRHFQAILPIRGKILNVEKASLDKILANDEIRSLFTAMGTGFGG-DFDLSKARYH 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLL+T FYRY + + + G +Y+ PPLYK+++GKQ Y +D E
Sbjct: 500 KLVIMTDADVDGAHIRTLLITLFYRYMRPVVEAGYVYIAQPPLYKLKQGKQEFYIQNDEE 559
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ P++ I R+KGLGEM QLWETT+NP+ R + Q+ +EDAAEA+ V L
Sbjct: 560 LEAKLKELPASPKPQISRYKGLGEMDAEQLWETTMNPQNRSMLQVTVEDAAEADQVLDML 619
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG +V+ R+E I+ + ++++ LDI
Sbjct: 620 MGDKVEPRREFIEANSKFIDVNDLDI 645
>gi|189345573|ref|YP_001942102.1| DNA gyrase subunit B [Chlorobium limicola DSM 245]
gi|189339720|gb|ACD89123.1| DNA gyrase, B subunit [Chlorobium limicola DSM 245]
Length = 643
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 242/503 (48%), Positives = 332/503 (66%), Gaps = 16/503 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG P V + D +GT+ F PD ++F T +F + I R+RELAF
Sbjct: 147 YFQRYERGVP----QGDVKEIGPSDLRGTKTTFKPDHEIFKTT-EFRRDIIIDRMRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK-KPLHDVVGFRKDVDGITI 121
LN L I ++ D + E + + GGL E+VQ+ + ++ K L + V + D +
Sbjct: 202 LNKTLRITVQDSDGNEEV-----FHYEGGLNEFVQFTDQNRIKLLKEPVYIYGERDSTIV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+LALQ+ +D+Y + + Y N+I T +GGTH+ G + +LTRTLN+ +K+ +K+ +SL+
Sbjct: 257 ELALQY-NDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNAYAQKNDLLKNLKLSLT 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +EGLT +ISV+V P+FEGQTKT+LGN E + +V+ V E L E+LE +P+VL I
Sbjct: 316 GDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVESIVNEQLAEFLESNPNVLKLI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K A + AA++A++L R+KSVL SS LPGKLADCS PE E++IVEGDSAGGS
Sbjct: 376 IEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSINDPEHCELYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPL+GKILNVE+ M +NEEI+ +I ALG E+F E LRY
Sbjct: 436 AKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILALGTSFGEEEFSPEKLRYG 495
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFF+RY ++L + G +++ PPLY V+ GK QY +DD E
Sbjct: 496 KIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVFIAQPPLYLVKSGKDQQYAWDDDE 555
Query: 422 LKKVKSSF----PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
V S A IQR+KGLGEM P QLW TT++P R L Q+ +E+A EA+ V
Sbjct: 556 RNAVIESLRKMQKGKANVHIQRYKGLGEMNPEQLWSTTMDPAHRSLLQVSVENAMEADKV 615
Query: 478 FSSLMGARVDTRKELIQNAANLV 500
FS+LMG +V+ R++ I+ A V
Sbjct: 616 FSTLMGDKVEPRRDFIEKNARYV 638
>gi|345020606|ref|ZP_08784219.1| DNA gyrase subunit B [Ornithinibacillus scapharcae TW25]
Length = 640
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 240/502 (47%), Positives = 337/502 (67%), Gaps = 18/502 (3%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
+ RG PV L V DR GT F PD ++FT +D +T+ R+RELAFLN
Sbjct: 151 FERGVPVKPLEV----VGETDRTGTTTHFKPDPEIFTETTTYDLDTLVQRVRELAFLNKG 206
Query: 67 LTIALRKEDSDPEKNQYNE----YFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
+ I++ E + NE + + GG+ EYV+++N +K+ LH+ + GI ++
Sbjct: 207 IRISI-------EDKRTNEGPISFHYEGGISEYVEYINRNKEGLHEPFYAEGEDQGIAVE 259
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+A+Q+ +D ++ ++ +AN+I T +GGTH G K LTR +N +K+ +K+ + +L+G
Sbjct: 260 VAVQY-NDGFNSSIYSFANNIHTYEGGTHESGFKTGLTRVINDYARKNGLMKESEPNLTG 318
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+ VREG+T I+SV+ P+P+FEGQTKT+LGN EVR + D E +++L +P + I+
Sbjct: 319 DDVREGITAIVSVKHPDPQFEGQTKTKLGNSEVRAITDSVFSEMFSKFLLENPSIGKIIV 378
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K L A +A AAK+ARDL R+KSVL S+LPGKLADCSS SE++IVEGDSAGGSA
Sbjct: 379 EKGLMASRARAAAKKARDLTRRKSVLEISNLPGKLADCSSKDASISELYIVEGDSAGGSA 438
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQGRDR FQAILPLRGKILNVE+ + N E++++I A+G G+ G+DF RYHK
Sbjct: 439 KQGRDRHFQAILPLRGKILNVEKARLDRILSNNEVRSMITAMGTGI-GDDFDISKARYHK 497
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
I+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYKV++GK V Y YDD EL
Sbjct: 498 IVIMTDADVDGAHIRTLLLTFFYRFMRPLIEHGYVYIAQPPLYKVQQGKVVHYAYDDKEL 557
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
++ + P + +QR+KGLGEM QLWETT++PE R L Q+ + DA EA+ VF LM
Sbjct: 558 DRILAELPESPKPGLQRYKGLGEMNAEQLWETTMDPENRTLLQVELSDAIEADHVFDMLM 617
Query: 483 GARVDTRKELI-QNAANLVNLD 503
G +V+ R++ I +NA + NLD
Sbjct: 618 GDKVEPRRQFIEENAQYVKNLD 639
>gi|456014414|gb|EMF48027.1| DNA gyrase subunit B [Planococcus halocryophilus Or1]
Length = 642
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 236/503 (46%), Positives = 331/503 (65%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++ K+ RG +T + + D GT IRF D ++F ++ + + R+RELA+
Sbjct: 147 HYIKFERG----AVTEELKVIGDSDHTGTTIRFKADSEIFKETTVYEFDILDHRLRELAY 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITI 121
LN L I ++ E EK + Y F GG++ YV+ LN K PLH+ F + DGIT+
Sbjct: 203 LNRGLRIVVKDEREGEEKEKI--YHFVGGIKSYVEHLNKSKDPLHEEAIFVEAERDGITV 260
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ + Y+ + +AN+I T +GGTH G K +LTR +N G+K +K++D++L+
Sbjct: 261 EVSMQYNA-GYAANIFSFANNINTHEGGTHESGFKTALTRVVNDYGRKKSMLKEQDLNLT 319
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN EV +V+ +L +P V I
Sbjct: 320 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNTEVSTIVNNLFSNGFERFLLENPAVSKKI 379
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A A +AAK+AR+ R+KSVL SSLPGKLADCSS P+ SEI+IVEGDSAGGS
Sbjct: 380 IEKGIMASHARMAAKKAREFTRRKSVLEVSSLPGKLADCSSRDPKISEIYIVEGDSAGGS 439
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILPLRGKILNVE+ + N+EI+N+I ALG G+ GE+F E RYH
Sbjct: 440 AKSGRDRHFQAILPLRGKILNVEKARLDRILTNDEIRNIITALGTGI-GEEFNLEKARYH 498
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTF +RY + L + G IY+ PPL+++++GK ++Y Y D +
Sbjct: 499 KIVIMTDADVDGAHIRTLLLTFLFRYMRPLLEAGYIYIAQPPLFQIKQGKHIEYVYTDDQ 558
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LK +IQR+KGLGEM QLW+TT++P+ R L Q+ + DA A+ F L
Sbjct: 559 LKTALERLSPTPKPNIQRYKGLGEMNATQLWDTTMDPDVRTLLQVTLNDAMVADETFHIL 618
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG V+ R+ I +NA + NLD
Sbjct: 619 MGDDVEPRRNFIEENAKYVKNLD 641
>gi|153939432|ref|YP_001389375.1| DNA gyrase subunit B [Clostridium botulinum F str. Langeland]
gi|384460465|ref|YP_005673060.1| DNA gyrase subunit B [Clostridium botulinum F str. 230613]
gi|152935328|gb|ABS40826.1| DNA gyrase, B subunit [Clostridium botulinum F str. Langeland]
gi|295317482|gb|ADF97859.1| DNA gyrase, B subunit [Clostridium botulinum F str. 230613]
Length = 637
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 247/504 (49%), Positives = 351/504 (69%), Gaps = 14/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG T L V + GT+I F PD ++F ++F+++T+A R+RELAF
Sbjct: 144 WKQRFERGITKTGLDI----VGDTEDHGTKIYFKPDIEIFD-ELEFEYDTLAQRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN + I+L E D ++ + + GGL +V +LN +K+ LH + K+ DG +
Sbjct: 199 LNKGIKISLTDERYDKKEM----FHYEGGLRSFVLYLNRNKEKLHQQPIYVDKNKDGCIV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y++ + +AN+I TI+GGTH+ G K++LTR +N +K +KD D +LS
Sbjct: 255 EIAMQY-NDGYAENIFSFANNIDTIEGGTHLAGFKSALTRAINDYARKFNYLKDTDKNLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT +ISV++ +P+FEGQTKT+LGN EVR +VD V E + +LE +P+V I
Sbjct: 314 GDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDTIVGESIGSFLEENPNVGKII 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K LSA +A AAKRAR+L R+KSVL S+SLPGKLADCSS P EI++VEGDSAGGS
Sbjct: 374 IEKGLSASRAREAAKRARELTRRKSVLESTSLPGKLADCSSKDPSLCEIYLVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILPL+GKI+NVE++ + ++EI+ +I A G G+ G++F E +RY+
Sbjct: 434 AKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITAFGAGI-GKEFDIEKIRYN 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDADVDGAHIRTLLLTFFYRY K L +EG +Y+ PPLY++ + K+ Y Y D E
Sbjct: 493 RIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHVYIAQPPLYRIFKAKKEIYVYSDPE 552
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L + +IQR+KGLGEM P QLW+TT++PE R L Q+ IEDA A+ +F+
Sbjct: 553 LDAALLELGGKDTNTNIQRYKGLGEMNPEQLWDTTMDPEHRTLLQVTIEDAMVADEIFTI 612
Query: 481 LMGARVDTRKELIQNAAN-LVNLD 503
LMG +V+ R+E I+N A+ +VNLD
Sbjct: 613 LMGTKVEPRREFIENNADKVVNLD 636
>gi|51891144|ref|YP_073835.1| DNA gyrase B subunit [Symbiobacterium thermophilum IAM 14863]
gi|51854833|dbj|BAD38991.1| DNA gyrase B subunit [Symbiobacterium thermophilum IAM 14863]
Length = 638
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 242/485 (49%), Positives = 342/485 (70%), Gaps = 13/485 (2%)
Query: 24 DSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPE-KNQ 82
D+K+ GT +RFWPD ++F + ++FD I R+R+ AFLN L I E + E + +
Sbjct: 163 DTKE-HGTYVRFWPDPEIFES-VEFDSEAIVTRLRDTAFLNQGLFIQFIDEKAGAEYRFK 220
Query: 83 YNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYAN 141
YNE GL+ +VQ+LN ++PLH + K D ++LA+Q+ +DAYS+ +L +AN
Sbjct: 221 YNE-----GLQTFVQYLNRSREPLHAKPIYVFKATDTQEMELAIQY-TDAYSENILSFAN 274
Query: 142 SIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPE 201
+IRT++GGTH G+K +LTR +NS +K K +KD + +LSGE +REG+T I+SV++ P+
Sbjct: 275 NIRTVEGGTHETGLKTALTRVINSYARKYKLLKDNEDNLSGEDIREGMTAILSVKLQEPQ 334
Query: 202 FEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 261
FEGQTKT+LG+ E+ V +V E L+++LE +P + I+ K+LSA +A AA++AR+L
Sbjct: 335 FEGQTKTKLGSSEMETFVAAAVSEGLSDFLEENPAIAKRIVEKALSAARAREAARKAREL 394
Query: 262 VRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKIL 321
VR+KS L ++LPGKL DC+S P ESE+F+VEGDSAGGSAK GRDRR QA+LPLRGKIL
Sbjct: 395 VRRKSALEITALPGKLTDCTSRDPSESELFLVEGDSAGGSAKMGRDRRIQAVLPLRGKIL 454
Query: 322 NVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLL 381
NVE+ + NEEI+ LI A+G G+ G+DF RYHK+II+TDADVDG+HIRTLLL
Sbjct: 455 NVEKARLDKILSNEEIRTLITAVGAGI-GDDFDISKCRYHKVIIMTDADVDGSHIRTLLL 513
Query: 382 TFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFK 441
TFF+R+ + L + G +Y+ PPLY + +GKQV Y Y + E +V + QR+K
Sbjct: 514 TFFFRFMRPLIEAGYLYIASPPLYMIRKGKQVYYAYSEQEKDQVIARI-GGVTDKPQRYK 572
Query: 442 GLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV- 500
GLGEM P QLWETT++P +R+L ++ +EDAAEA +F +LMG +V+ R+E IQ A+LV
Sbjct: 573 GLGEMNPEQLWETTMDPSKRILYKVTMEDAAEATALFETLMGEKVEPRREFIQRNAHLVQ 632
Query: 501 NLDHL 505
NLD +
Sbjct: 633 NLDTI 637
>gi|194332868|ref|YP_002014728.1| DNA gyrase subunit B [Prosthecochloris aestuarii DSM 271]
gi|194310686|gb|ACF45081.1| DNA gyrase, B subunit [Prosthecochloris aestuarii DSM 271]
Length = 644
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 235/503 (46%), Positives = 337/503 (66%), Gaps = 16/503 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG P C V + D+ GT+ F PD +F T +F + I R+RELAF
Sbjct: 148 WYQRYHRGVP----QCEVKIIGETDKTGTKTTFMPDASIFKTT-EFRKDVIIDRMRELAF 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L I ++ D E + + GG++E+V + + ++ L + V + D +
Sbjct: 203 LNSVLKIVVKDTDDSEET-----FHYEGGIKEFVTYTDHNRIALVKEPVYLYGERDTTVV 257
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y + + Y N+I T +GGTH+ G + +LTRTLN+ +K+ +K+ +SL+
Sbjct: 258 EIALQY-NDSYQENVFSYVNNINTHEGGTHMTGFRKALTRTLNAYAQKNDLLKNLKLSLT 316
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +EGLT IISV+V P+FEGQTKT+LGN E + +V+ V E L E+LE +P+VL +I
Sbjct: 317 GDDFKEGLTAIISVKVAEPQFEGQTKTKLGNSETQSIVESIVNEQLAEFLESNPNVLKTI 376
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K SA + AA++A++L R+KSVL S+ LPGKLADCS PE E++IVEGDSAGGS
Sbjct: 377 IEKVKSAALSRDAARKAKELTRRKSVLESTGLPGKLADCSINDPEHCELYIVEGDSAGGS 436
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPL+GKILNVE+ M +NEEI+ +I ALG ++F + LRY
Sbjct: 437 AKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILALGTNFGEDEFMADKLRYG 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFF+R+ + L + G +++ PPLY ++ GK+ +Y +D+ E
Sbjct: 497 KIIIMTDADVDGAHIRTLLLTFFFRHMRPLIEAGKVFIAQPPLYLIKAGKEQKYAWDEDE 556
Query: 422 ----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ +K S +IQR+KGLGEM P QLW TT++PE R L Q+ +E+A EA+ V
Sbjct: 557 RTTIMEMMKKSQKGKTNINIQRYKGLGEMNPEQLWSTTMDPEHRSLLQVTVENAMEADQV 616
Query: 478 FSSLMGARVDTRKELIQNAANLV 500
FS+LMG +VD R+E I+ A V
Sbjct: 617 FSTLMGDKVDPRREFIEKNARYV 639
>gi|167755161|ref|ZP_02427288.1| hypothetical protein CLORAM_00666 [Clostridium ramosum DSM 1402]
gi|365832183|ref|ZP_09373724.1| DNA gyrase, B subunit [Coprobacillus sp. 3_3_56FAA]
gi|374626903|ref|ZP_09699311.1| DNA gyrase, B subunit [Coprobacillus sp. 8_2_54BFAA]
gi|167705211|gb|EDS19790.1| DNA gyrase, B subunit [Clostridium ramosum DSM 1402]
gi|365260926|gb|EHM90863.1| DNA gyrase, B subunit [Coprobacillus sp. 3_3_56FAA]
gi|373913448|gb|EHQ45285.1| DNA gyrase, B subunit [Coprobacillus sp. 8_2_54BFAA]
Length = 641
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 242/505 (47%), Positives = 343/505 (67%), Gaps = 11/505 (2%)
Query: 2 EYHQKYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
EY+Q++ G KP L + D GT + F DK +F +D++T+ RIREL
Sbjct: 144 EYYQRFENGGKPAGELKI----IGDSDITGTIVTFKADKIIFKEGTVYDYDTLRQRIREL 199
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDG-I 119
AFLN L ++L ED ++ +EY++ GG++EYV ++N +K P+H+ + + +D+ I
Sbjct: 200 AFLNKGLRLSL--EDQRNGVDRKHEYYYEGGIKEYVAYINKNKTPIHEEIIYVEDMQQEI 257
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
TI++ +Q+ +D Y + + N+I T +GGTH EG + +LTR +N+ K +K + +
Sbjct: 258 TIEVGMQY-NDGYQSNIYSFCNNINTHEGGTHEEGFRLALTRVINNYAKSKGLLKKDEEA 316
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSG+ VREGLT IISV+ P+P++EGQTKT+LGN EVRK+ + L ++L +PD
Sbjct: 317 LSGDDVREGLTAIISVKHPDPQYEGQTKTKLGNAEVRKIASNIISASLDKFLLENPDTAK 376
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K++ A +A +AAK+AR++ R+K+VL S+LPGKLADCSS E EIFIVEGDSAG
Sbjct: 377 IIVDKAIVAARARMAAKKAREMTRRKNVLEVSNLPGKLADCSSKDASECEIFIVEGDSAG 436
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GRDRR QAILPLRGKILNVE+ + N EI+++I A G G+ GE+F + LR
Sbjct: 437 GSAKMGRDRRIQAILPLRGKILNVEKSRLEKILGNAEIRSMITAFGTGI-GEEFNLDKLR 495
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHKI+I+TDADVDG HIR L+LTF YRY + L + G +Y PPLY ++ GK YCY D
Sbjct: 496 YHKIVIMTDADVDGGHIRILMLTFLYRYLRPLVEGGFVYAAQPPLYLLKHGKDEYYCYSD 555
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL +K+ A YSIQR+KGLGEM QLWETT++PE+R+L Q+ +++A EA+++F
Sbjct: 556 EELDDLKTKIGEGAKYSIQRYKGLGEMNAEQLWETTMDPEKRILNQIDLDEAMEADMIFD 615
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+E IQ NA + +LD
Sbjct: 616 MLMGEKVEPRREFIQENAKYVTDLD 640
>gi|346226422|ref|ZP_08847564.1| DNA gyrase subunit B [Anaerophaga thermohalophila DSM 12881]
Length = 656
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 238/510 (46%), Positives = 342/510 (67%), Gaps = 15/510 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + V + D+ GT I F PD +F I+F ++ +A R+RELAF
Sbjct: 152 YRQEYQKGKPLAPIE----EVGTTDKTGTWITFMPDSSIFNN-IEFKYSILASRMRELAF 206
Query: 63 LNPKLTIALR-KEDSDPEKNQYNEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN L I L K + D E N +E F++ GL E+V +++ +++ L D + + + I
Sbjct: 207 LNSGLEIILTDKREKDEEGNFKSERFYSENGLIEFVNFIDGNREKLIDEPIHISTEKNDI 266
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+D+A+ + + ++++ + Y N+I TI+GGTH+ G + LTRTL + +KS +
Sbjct: 267 PVDIAIVYNT-SFNENVYSYVNNINTIEGGTHLTGFRRGLTRTLKNWAEKSGMLSKLKFD 325
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
++G+ REGLT +ISV+V P+FEGQTKT+LGN EV VDQ+V L+ YLE +P
Sbjct: 326 INGDDFREGLTAVISVKVAEPQFEGQTKTKLGNSEVSLAVDQAVSTMLSNYLEENPKEAK 385
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I +K + A A AA++AR+LV++KSVL LPGKLADCS PE++EIF+VEGDSAG
Sbjct: 386 AIANKVILAATARHAARKARELVQRKSVLSGGGLPGKLADCSERDPEQAEIFLVEGDSAG 445
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK---- 355
G+AKQGRDRRFQAILPLRGKILNVE+ + +++N+EI+N+ ALG+ + E+ K
Sbjct: 446 GTAKQGRDRRFQAILPLRGKILNVEKALQHKVFENDEIKNIFTALGVNIGTEEDSKALNI 505
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
E LRYHKI+I+TDADVDG+HI TL++TFF+RY K L +G +Y+ PPLY +++GK +Y
Sbjct: 506 EKLRYHKIVIMTDADVDGSHIATLIMTFFFRYMKELIKKGYLYIATPPLYFLKKGKFEEY 565
Query: 416 CYDDAELKKVKSSFPSNALYS--IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
C+ DA+ ++ + S IQR+KGLGEM QLW TT+NPE RML+Q+ E+AAE
Sbjct: 566 CWTDAQRREFVEKYADGKEDSVHIQRYKGLGEMNSEQLWHTTMNPENRMLRQVTYENAAE 625
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +FS LMG V R+E I+ A N+D
Sbjct: 626 ADRIFSMLMGDDVPPRREFIEKNATYANID 655
>gi|153952676|ref|YP_001393441.1| DNA gyrase subunit B [Clostridium kluyveri DSM 555]
gi|219853349|ref|YP_002470471.1| DNA gyrase B subunit [Clostridium kluyveri NBRC 12016]
gi|146345557|gb|EDK32093.1| GyrB1 [Clostridium kluyveri DSM 555]
gi|219567073|dbj|BAH05057.1| DNA gyrase B subunit [Clostridium kluyveri NBRC 12016]
Length = 637
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 241/504 (47%), Positives = 351/504 (69%), Gaps = 14/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q + RGK T L + + GT+I F PDK++F + FD++ ++ R+RELAF
Sbjct: 144 WKQVFKRGKVATGLEI----IGDSEEHGTKIYFKPDKEIFD-EVDFDYDMLSQRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDG-ITI 121
LN + I L+ E S E+ + + GG++ +V +LN +K+ +H + + + G ++
Sbjct: 199 LNKGIAITLKDERSGKEE----LFHYEGGIKSFVTYLNRNKQTIHKEPIYVEGIKGDYSV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A Q+ ++ YS+ + +AN+I TI+GGTH+ G K++LTR N KK +K+ D +LS
Sbjct: 255 EIAFQY-NNGYSENIFSFANNIDTIEGGTHLAGFKSALTRVFNDYAKKFNILKENDKNLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REG+T +IS+++ +P+FEGQTKT+LGN EVR +VD + E L+++L+ +P V +I
Sbjct: 314 GEDIREGITAVISIKLVDPQFEGQTKTKLGNSEVRGIVDNIMAESLSDFLQENPQVAKTI 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KSL A +A AA++AR+L R+K+VL ++SLPGKLADCSS P E EI++VEGDSAGGS
Sbjct: 374 IDKSLVASRAREAARKARELTRRKTVLENTSLPGKLADCSSKDPSECEIYLVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKI+NVE++ + EEI+ +I A G G+ G+DF +RY+
Sbjct: 434 AKQGRDRRFQAILPLRGKIMNVEKQRLDKILGYEEIRAMITAFGAGI-GKDFDISKIRYN 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYRY + L ++ +Y+ PPLYKV + K+ Y Y D E
Sbjct: 493 KIIIMTDADVDGAHIRTLLLTFFYRYMRELVEKCHVYIAQPPLYKVAKNKKDYYAYSDKE 552
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L + + N+ +IQR+KGLGEM QLW+TT+NPE R L Q+ +ED A+ +F+
Sbjct: 553 LDILLNEIGGKNSNVNIQRYKGLGEMDSEQLWDTTMNPETRTLIQVNVEDTIAADEIFTI 612
Query: 481 LMGARVDTRKE-LIQNAANLVNLD 503
LMG +V+ RK+ +I+NA +VNLD
Sbjct: 613 LMGDKVEPRKDFIIENAKKVVNLD 636
>gi|404486886|ref|ZP_11022074.1| DNA gyrase, B subunit [Barnesiella intestinihominis YIT 11860]
gi|404335940|gb|EJZ62406.1| DNA gyrase, B subunit [Barnesiella intestinihominis YIT 11860]
Length = 651
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 238/512 (46%), Positives = 346/512 (67%), Gaps = 17/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+YS GKP+ + + + GT I F PD +F+ + +D+N +A R+R+LA+
Sbjct: 145 YMQEYSCGKPLHDVEI----IGETEETGTTIIFRPDDSIFSVTV-YDYNILANRLRDLAY 199
Query: 63 LNPKLTIALRKEDSDPEKNQY-NEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN +T++L + + + +Y E F++ GL+E+V++++++K+ L DV+ + G+
Sbjct: 200 LNAGITLSLTDKRTTNDAGEYRKEVFYSKEGLKEFVRYIDSNKEHLIDDVIHIATERQGV 259
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+ + + Y++ + Y N+I TI+GGTH+ G + LTRTL + SK ++ +
Sbjct: 260 PVEVAMTY-NTTYNENVYSYVNNINTIEGGTHLTGFRRGLTRTLKKYAEDSKMLEKVKVE 318
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+S + REGLT +ISV+V P+FEGQTKT+LGN EV VD +V E L YLE HP
Sbjct: 319 ISSDDFREGLTAVISVKVMEPQFEGQTKTKLGNSEVIGAVDTAVSEALANYLEEHPAQAK 378
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A A AA++AR++V++KS L LPGKLADCSS PE+ EIF+VEGDSAG
Sbjct: 379 TIVEKVIIAATARHAARKAREMVQRKSPLSGGGLPGKLADCSSRNPEDCEIFLVEGDSAG 438
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA-- 357
GSAKQGRDR FQAILPLRGKILNVE+ + +++++EI N+ +ALG+ + E+ KEA
Sbjct: 439 GSAKQGRDRMFQAILPLRGKILNVEKAMDHKVFESQEISNMFKALGVTIGTEEDSKEANI 498
Query: 358 --LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKV--ERGKQV 413
LRYHKIII+TDADVDGAHI TLLLTFF+R + L ++G +Y+ PPLYK +RGK
Sbjct: 499 EKLRYHKIIIMTDADVDGAHIATLLLTFFFRRMRPLLEQGYVYLATPPLYKCKSKRGKTE 558
Query: 414 QYCYDDAELKK--VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
+YC+ D + + +K + L QR+KGLGEM P QLWETT++PE R+LKQ+ I++A
Sbjct: 559 EYCWTDQQKDQFCLKYCEGNEQLMETQRYKGLGEMNPHQLWETTMDPENRILKQVTIDNA 618
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AEA+ VFS LMG V R+E I++ A N+D
Sbjct: 619 AEADRVFSMLMGEDVGPRREFIESNATYANID 650
>gi|76802387|ref|YP_327395.1| DNA topoisomerase II subunit B (DNA gyrase) [Natronomonas pharaonis
DSM 2160]
gi|76558252|emb|CAI49840.1| DNA gyrase subunit B [Natronomonas pharaonis DSM 2160]
Length = 639
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 242/497 (48%), Positives = 333/497 (67%), Gaps = 7/497 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+H ++ G+P L V +D + GT IRFWPD +F T F +T+ R+RELAF
Sbjct: 142 WHHRFDHGEPENGLE-QVREMDPNESTGTEIRFWPDDDIFETT-DFTFSTLESRLRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LNP + I +R D PE+ + + + GG+ E+V +LN + LH+ ++ F + D I +
Sbjct: 200 LNPGVGITIR--DERPEEPDASTFEYDGGIREFVAYLNETRDVLHENIIYFEDEEDDIHV 257
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q + ++ +AN+I T +GGTH+ G K +LTR +N + +KD D +L
Sbjct: 258 EVAMQ-ATAGVQGSIHAFANNINTREGGTHLTGFKTALTRVINDYATSNGMLKDLDGNLK 316
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT +IS++ P+P+FEGQTKT+LGN EVR +V+ +V E L +LE HPD ++I
Sbjct: 317 GEDIREGLTAVISIKHPDPQFEGQTKTKLGNGEVRGIVESAVHEELATHLEEHPDTAEAI 376
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+SK++ A KA AAK+A +L R+KS L S+SLPGKL+DC + PEESE+F+VEGDSAGGS
Sbjct: 377 ISKAVEAAKARKAAKKAEELTRRKSALESTSLPGKLSDCQTRDPEESELFVVEGDSAGGS 436
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+ FQAILPLRGKILNVE+ + +N EI+NLI A+G G+ GE+F E RY
Sbjct: 437 AKQGRNPEFQAILPLRGKILNVEKHRLDRILENNEIRNLITAVGTGI-GEEFDIEEARYQ 495
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIIIL DADVDGAHIRTLLLTF YR+ L + G +Y PPLY+V G +AE
Sbjct: 496 KIIILCDADVDGAHIRTLLLTFLYRHMTPLIEAGYVYAAQPPLYRVRDGGDTYDAMTEAE 555
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
++ + +QRFKGLGEM P QLW+TT+NPE R+LKQ+ IEDAA A+ +FS L
Sbjct: 556 RDRIVEEVCDGSPDQVQRFKGLGEMNPKQLWDTTMNPENRILKQITIEDAAAADRMFSVL 615
Query: 482 MGARVDTRKELIQNAAN 498
MG V+ RK+ I+ A+
Sbjct: 616 MGDAVEPRKQFIKEHAD 632
>gi|220930856|ref|YP_002507764.1| DNA gyrase subunit B [Halothermothrix orenii H 168]
gi|219992166|gb|ACL68769.1| DNA gyrase, B subunit [Halothermothrix orenii H 168]
Length = 642
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 249/503 (49%), Positives = 350/503 (69%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQKY+RG PV L + GT I F PD+++F + F + +A R++ELAF
Sbjct: 149 YHQKYNRGIPVYDLKV----IGECSGTGTTISFKPDEEIFED-VNFKYKVLAQRLKELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVD-GITI 121
LN + I LR D E+ + +EY F GGL +V++LN +K PL D + ++ D +
Sbjct: 204 LNKGVRIILR--DEREEEARQDEYCFEGGLVSFVKYLNKNKNPLFDEPFYLEEKDENREV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y D++ +AN+I T +GGTH+ G K++LTRT+N + +K+ D +L+
Sbjct: 262 EIAIQY-NDGYVDSIFTFANNINTREGGTHLSGFKSALTRTVNDYARSKGILKENDENLT 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REG+T IISVR+ +P+FEGQTKT+LGN E+R VD ++ L +LE +P + I
Sbjct: 321 GEDIREGITAIISVRLTDPQFEGQTKTKLGNSEIRGFVDSALSSNLRTFLEENPKIGKII 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+ SA +A AAK+AR+L R+K L +++LPGKLADCSS E +EI+IVEGDSAGGS
Sbjct: 381 VEKARSAARARKAAKKARELTRRKGALSNTALPGKLADCSSRDTENTEIYIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQAILPLRGKILNVE+ + NEEI+ LI A+G G+ G++F RY
Sbjct: 441 AKQGRDRKFQAILPLRGKILNVEKARLNKILNNEEIRALITAIGTGI-GDEFDINKARYG 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYRY + L + G IY+ PPLYKV++G++ +Y Y+D
Sbjct: 500 KIIIMTDADVDGAHIRTLLLTFFYRYMRPLIENGMIYIAQPPLYKVKKGRREEYVYNDRG 559
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+K+ + + + ++QR+KGLGEM P QLWETT+NPE R++ ++ IEDA A+ F++L
Sbjct: 560 LQKLLNDIGRDKI-TLQRYKGLGEMNPDQLWETTMNPENRIILKVKIEDAVVADETFTTL 618
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V R+E IQ A+ V NLD
Sbjct: 619 MGDKVQPRREFIQEHAHEVQNLD 641
>gi|339501434|ref|YP_004699469.1| DNA gyrase subunit B [Spirochaeta caldaria DSM 7334]
gi|338835783|gb|AEJ20961.1| DNA gyrase, B subunit [Spirochaeta caldaria DSM 7334]
Length = 635
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 239/511 (46%), Positives = 348/511 (68%), Gaps = 21/511 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF-TTAIQFDHNTIAGRIRELA 61
++QKY G P ++ + + +++GT +RF D +F TT FD ++ R+RELA
Sbjct: 140 HYQKYHIGVPEESVKV----IGTTNKRGTIVRFLADATIFETTTYNFD--VLSNRLRELA 193
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVD 117
FLN + I++R E K+ +E+ F GG+ +V++LN +K LH + G R D++
Sbjct: 194 FLNKGIRISIRDERLTTPKS--HEFIFEGGVVSFVEYLNQNKTVLHKECIYIAGTRDDIE 251
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
++ A+Q+ +D +++ M + N I T +GGTH+ G K++LTRTLN KKSK K +
Sbjct: 252 ---VECAIQY-NDGFNEIMFSFVNDINTREGGTHLVGFKSALTRTLNEYLKKSKLAKKME 307
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
SLSG+ VREGLT ++SV+VPNP+FEGQTK +LGN EV+ +V+ V E L +L+ HPD+
Sbjct: 308 ESLSGDDVREGLTAVLSVKVPNPQFEGQTKGKLGNSEVKGIVESLVNEQLELFLDQHPDI 367
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+++IL KS+ A KA +AA++ARD R+K+++ S+ LPGKLADCS P + E+FIVEGDS
Sbjct: 368 VNAILEKSVLAAKARIAARQARDATRRKNLMESAGLPGKLADCSEKDPTKCELFIVEGDS 427
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAK GR+R FQAIL L GK+LNVE+ + N+++Q +I ++G G+ G+ F
Sbjct: 428 AGGSAKMGRNRAFQAILSLWGKMLNVEKTHIEKVITNDKLQPIIASIGAGI-GDSFDISK 486
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHKIII+ DADVDG+HIRTLLLTFFYRY L + G +Y+ +PPLYK+ K+V Y Y
Sbjct: 487 LRYHKIIIMADADVDGSHIRTLLLTFFYRYMTELIERGHVYLAMPPLYKITYEKKVFYAY 546
Query: 418 DDAELKKV-KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
DDAE ++ S +IQR+KGLGEM P QLWETT++PE+R + Q+ ++DA EA
Sbjct: 547 DDAEKDRILAESGKDPEKVAIQRYKGLGEMNPDQLWETTMDPERRNIVQVHMDDAVEAER 606
Query: 477 VFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+FS+LMG +V+ R+ I+ N + + +LD+
Sbjct: 607 IFSTLMGEQVEPRRIFIEE--NALAVSYLDV 635
>gi|448399828|ref|ZP_21571061.1| DNA gyrase subunit B [Haloterrigena limicola JCM 13563]
gi|445668281|gb|ELZ20911.1| DNA gyrase subunit B [Haloterrigena limicola JCM 13563]
Length = 643
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/501 (46%), Positives = 334/501 (66%), Gaps = 13/501 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ + G+PV + V ++ D GT IRFWPD +F T +F +T++ R+RELAF
Sbjct: 142 FRHAFEAGEPVGDME-RVRDMEPDDETGTEIRFWPDTGIFETG-EFAFSTLSNRLRELAF 199
Query: 63 LNPKLTIALRKE-----DSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVD 117
LN + I LR E D P Y + GG+ E+V++LN + +HD V + D D
Sbjct: 200 LNSGVRITLRDEREEKSDDGPVAETYE---YDGGIREFVEYLNETRSAMHDDVIYFDDED 256
Query: 118 -GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
I +++A+Q ++ ++ +AN+I T +GG+H+ G K +LTRT+N ++ + D
Sbjct: 257 QNIQVEVAMQ-ATEELQGSIHAFANNINTREGGSHLTGFKTALTRTVNDYANENDLLSDL 315
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
+ +L GE +REGLT +IS++ P+P+FEGQTKT+LGN EVR +V+ ++ E L Y E HPD
Sbjct: 316 EDNLKGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIVESAMHEGLGTYFEEHPD 375
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
++I++K++ A KA +AA++A +L R+KS L S+SLPGKLADC + PEE+E+FI EGD
Sbjct: 376 TAEAIVTKAVEAAKARMAAQKAEELTRRKSALESTSLPGKLADCQTKDPEEAELFIAEGD 435
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SAGGSAKQ R+ FQA+LP++GKILNVE+ + +N+EI+N+I A+G G+ G++F E
Sbjct: 436 SAGGSAKQARNPEFQAVLPIKGKILNVEKHRLDRILENDEIRNMITAIGAGI-GDEFDVE 494
Query: 357 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 416
+RY KII+ TDADVDGAHIRTLLLTFFYR+ + L + G +Y PPLY++ +
Sbjct: 495 DVRYKKIIMATDADVDGAHIRTLLLTFFYRHMRPLLEGGYVYATQPPLYRIRYRGETYDA 554
Query: 417 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
DAE ++ +QRFKGLGEM P QLWETT+NP+ R+LKQ+ IEDAA A+
Sbjct: 555 MTDAERDRIVEEKCDGNPSQVQRFKGLGEMNPEQLWETTMNPDNRILKQITIEDAAAADK 614
Query: 477 VFSSLMGARVDTRKELIQNAA 497
+FS LMG V+ RK+ I++ A
Sbjct: 615 MFSVLMGDAVEPRKQFIKDHA 635
>gi|431753187|ref|ZP_19541864.1| DNA gyrase subunit B [Enterococcus faecium E2620]
gi|430612692|gb|ELB49727.1| DNA gyrase subunit B [Enterococcus faecium E2620]
Length = 648
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/507 (47%), Positives = 342/507 (67%), Gaps = 14/507 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L ++ D GT + F PD ++FT +FD + +A RIRELAF
Sbjct: 149 YYQEYRRGAVVDDLKI----IEQTDCHGTTVHFTPDPEIFTETTEFDFSKLATRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I++ ED E+ NEY + GG++ YV++LN +K + + V + I +
Sbjct: 205 LNRGMRISI--EDKREEEPVINEYHYDGGIKSYVEYLNANKTVIFPEPVYLEGEQQDIAV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ +D Y ++ +AN+I T +GGTH G K +LTR +N +K K +K+ D +L+
Sbjct: 263 EVSMQY-TDGYHSNIMSFANNIHTYEGGTHESGFKTALTRVINDYARKQKLMKENDDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +IS++ P+P+FEGQTKT+LGN EVR V D+ E+ ++L +P V I
Sbjct: 322 GEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEHFMKFLLENPSVGRQI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A LAAKRAR++ R+K L S+LPGKLADCSS PE+ E+FIVEGDSAGGS
Sbjct: 382 VEKGLLASRARLAAKRAREVTRRKGALEISNLPGKLADCSSNDPEKCELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILP+RGKILNVE+ + NEEI++L A+G G GEDF RYH
Sbjct: 442 AKQGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GEDFDVSKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD--- 418
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PPLY V++GK + Y
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQPPLYGVKQGKNITYVQPGKN 560
Query: 419 -DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ ELK+V +S P++ S+QR+KGLGEM QLWETT++P RM+ ++ ++DA A+ +
Sbjct: 561 AEEELKQVVASLPASPKPSVQRYKGLGEMDDHQLWETTMDPSNRMMARVSVDDAIAADQI 620
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
F LMG RV+ R+ I+ A+ V NLD
Sbjct: 621 FEMLMGDRVEPRRAFIEENAHYVKNLD 647
>gi|384455130|ref|YP_005667723.1| DNA gyrase subunit B [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417968034|ref|ZP_12609081.1| DNA gyrase subunit B [Candidatus Arthromitus sp. SFB-co]
gi|418015417|ref|ZP_12654982.1| DNA gyrase, B subunit [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|418371928|ref|ZP_12964026.1| DNA gyrase subunit B [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|345505752|gb|EGX28046.1| DNA gyrase, B subunit [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|346983471|dbj|BAK79147.1| DNA gyrase subunit B [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380340308|gb|EIA28918.1| DNA gyrase subunit B [Candidatus Arthromitus sp. SFB-co]
gi|380343027|gb|EIA31447.1| DNA gyrase subunit B [Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 639
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 250/508 (49%), Positives = 347/508 (68%), Gaps = 20/508 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGKPV + V + + GT F PDK++FT ++D + ++ R+RELAF
Sbjct: 144 YFQEYKRGKPVDS----VKKIGNSMYTGTETYFIPDKEIFTETTEYDFDVLSQRLRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN + I L +D N E+F++GG+ E+++ +N KK L DV+ F + + +
Sbjct: 200 LNAGIKINL----NDLRFNNSEEFFYSGGIREFIKHINKGKKALFEDVIFFEHSKNDLNL 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK----DKD 177
+A+Q+ +D Y++ +L YAN+I T +GGTH+ G K SLTR +N KK +K D+
Sbjct: 256 QIAIQY-TDNYNENILTYANNIFTQEGGTHLVGFKTSLTRCVNDYAKKFNYIKESNKDEI 314
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
SL GE +REGL C++SV++ NP+FEGQTKT+LGN EVR +VD +E+L +P++
Sbjct: 315 KSLIGEDIREGLVCVLSVKMANPQFEGQTKTKLGNSEVRSIVDNIFFNCFSEFLNENPNI 374
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I K++ A KA AAK+AR+ R KSVL ++LPGKLADCSS PEE EI+IVEGDS
Sbjct: 375 GKIICEKAIIAAKAREAAKKARETTR-KSVLDRTALPGKLADCSSKNPEECEIYIVEGDS 433
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDR+FQAILPL GKI+NVE++ + +E I+ +I A G G+ G+DF +
Sbjct: 434 AGGSAKQGRDRKFQAILPLSGKIMNVEKQRIFKILSSETIRCMITAFGCGI-GQDFDVDK 492
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
+RY++II++TDADVDG+HIRTLLLTF YRY + ++G +Y+ PPLYKV GK+ YCY
Sbjct: 493 IRYNRIILMTDADVDGSHIRTLLLTFLYRYMPEVIEKGFVYIARPPLYKVSEGKKEFYCY 552
Query: 418 DDAELK-KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
+ EL K+K +N + IQR+KGLGEM PVQLWETT+NPE R L ++ IE A+ A+
Sbjct: 553 TEEELNLKLKEINKNNLV--IQRYKGLGEMNPVQLWETTMNPESRTLLRVTIEHASYADE 610
Query: 477 VFSSLMGARVDTRKELIQ-NAANLVNLD 503
+FS LMG +V+ R+E IQ NA N+ NLD
Sbjct: 611 IFSILMGDKVEPRREFIQNNAKNVKNLD 638
>gi|342731691|ref|YP_004770530.1| DNA gyrase subunit B [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|342329146|dbj|BAK55788.1| DNA gyrase subunit B [Candidatus Arthromitus sp. SFB-mouse-Japan]
Length = 639
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 250/508 (49%), Positives = 347/508 (68%), Gaps = 20/508 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGKPV + V + + GT F PDK++FT ++D + ++ R+RELAF
Sbjct: 144 YFQEYKRGKPVDS----VKKIGNSMYTGTETYFIPDKEIFTETTEYDFDVLSQRLRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN + I L +D N E+F++GG+ E+++ +N KK L DV+ F + + +
Sbjct: 200 LNAGIKINL----NDLRFNNSEEFFYSGGIREFIKHINKGKKALFEDVIFFEHSKNDLNL 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK----DKD 177
+A+Q+ +D Y++ +L YAN+I T +GGTH+ G K SLTR +N KK +K D+
Sbjct: 256 QIAIQY-TDNYNENILTYANNIFTQEGGTHLVGFKTSLTRCVNDYAKKFNYIKESNKDEI 314
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
SL GE +REGL C++SV++ NP+FEGQTKT+LGN EVR +VD +E+L +P++
Sbjct: 315 KSLIGEDIREGLVCVLSVKMANPQFEGQTKTKLGNSEVRSIVDNIFFNCFSEFLNENPNI 374
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I K++ A KA AAK+AR+ R KSVL ++LPGKLADCSS PEE EI+IVEGDS
Sbjct: 375 GKIICEKAIIAAKAREAAKKARETTR-KSVLDRTALPGKLADCSSKNPEECEIYIVEGDS 433
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDR+FQAILPL GKI+NVE++ + +E I+ +I A G G+ G+DF +
Sbjct: 434 AGGSAKQGRDRKFQAILPLSGKIMNVEKQRIFKILSSETIRCMITAFGCGI-GQDFDVDK 492
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
+RY++II++TDADVDG+HIRTLLLTF YRY + ++G +Y+ PPLYKV GK+ YCY
Sbjct: 493 IRYNRIILMTDADVDGSHIRTLLLTFLYRYMPEVIEKGFVYIARPPLYKVSEGKKEFYCY 552
Query: 418 DDAELK-KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
+ EL K+K +N + IQR+KGLGEM PVQLWETT+NPE R L ++ IE A+ A+
Sbjct: 553 TEEELNLKLKEINKNNLV--IQRYKGLGEMNPVQLWETTMNPESRTLLRVTIEHASYADE 610
Query: 477 VFSSLMGARVDTRKELIQ-NAANLVNLD 503
+FS LMG +V+ R+E IQ NA N+ NLD
Sbjct: 611 IFSILMGDKVEPRREFIQNNAKNVKNLD 638
>gi|258513372|ref|YP_003189594.1| DNA gyrase subunit B [Desulfotomaculum acetoxidans DSM 771]
gi|257777077|gb|ACV60971.1| DNA gyrase, B subunit [Desulfotomaculum acetoxidans DSM 771]
Length = 635
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 242/503 (48%), Positives = 348/503 (69%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG PV+ L V GT+I F PD+++F I F T+ R++ELA+
Sbjct: 144 FFQRYERGIPVSDLKI----VGDSSFTGTKITFSPDEEIFEDVI-FSRETLEQRLQELAY 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN ++ I L+ D N Y + GG++++V +N DK L + + F ++ D + +
Sbjct: 199 LNSRVKIYLK----DFINNLEFSYMYEGGIKDFVAHINQDKILLPEAPLYFVREKDHVMV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +DAY + + Y N+I TIDGGTH G +++LTR +N KK+ +K+ + +LS
Sbjct: 255 EVAMQY-TDAYFENLFSYVNNIHTIDGGTHEAGFRSALTRVINDYAKKNNLIKNNEGNLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT +IS++VP P+FEGQTK +LGN EVR +VD V E L+ +LE +P V I
Sbjct: 314 GEDIREGLTAVISIKVPEPQFEGQTKGKLGNSEVRGIVDSVVAEGLSTFLEENPAVSKKI 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KS+SA +A AA++AR+L R+K+VL SS+LPGKL+DCS+ P ESE+++VEGDSAGGS
Sbjct: 374 IEKSISAFRAREAARKARELTRRKNVLESSTLPGKLSDCSNRDPSESELYLVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQAILPL+GKILNVE+ + N+EI+ +I ALG G+ GEDF RYH
Sbjct: 434 AKQGRDRKFQAILPLKGKILNVEKARLDKILNNDEIRAMITALGTGI-GEDFDITKARYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDG+HIRTLLLTFFYRY + L + G I++ PPLY++++GK Y Y D +
Sbjct: 493 KLIIMTDADVDGSHIRTLLLTFFYRYMRPLIEAGYIFIAQPPLYRLKKGKMEIYLYSDRD 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ N + SIQR+KGLGEM QLW+TT++PE R + + +E+AAEA+ +F +L
Sbjct: 553 LENKLKEVGRNGI-SIQRYKGLGEMDAQQLWDTTMDPENRTILMVELENAAEADKIFDTL 611
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG RV+ R+ I ++A ++ NLD
Sbjct: 612 MGDRVEPRRSFINKHAHDVRNLD 634
>gi|392391698|ref|YP_006428300.1| DNA gyrase subunit B [Desulfitobacterium dehalogenans ATCC 51507]
gi|390522776|gb|AFL98506.1| DNA gyrase subunit B [Desulfitobacterium dehalogenans ATCC 51507]
Length = 644
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 242/503 (48%), Positives = 344/503 (68%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ++ RGK T L V+ +++ GT I F PD ++F + F +T+A R+REL+F
Sbjct: 151 YHQEFMRGKTKTELA--VIGQIDQNQTGTTITFSPDPEIFEDTV-FHFDTLAHRLRELSF 207
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN K++I L E D ++ Y+ GG+ ++V+++N K+ LH + + F + DG+ +
Sbjct: 208 LNKKVSITLIDEREDKKE----VYYHTGGIYDFVKYINRSKEALHPEPIYFEAEKDGVQV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ +D Y + + YAN+I T +GGTH G KA+LTR N +K+ +K + +LS
Sbjct: 264 EVSMQY-NDGYVENLFSYANNIHTHEGGTHESGFKAALTRVANEYARKNNILKANEANLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT +ISV+VP P+FEGQTKT+LGN E+R +VD E LT +LE +P +
Sbjct: 323 GEDIREGLTAVISVKVPEPQFEGQTKTKLGNSEIRSIVDSITGEGLTVFLEENPATGKKV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KS+ A +A AA++AR+L R+KS L S+LPGKLADCS E E++IVEGDSAGGS
Sbjct: 383 IEKSIQASRAREAARKARELTRRKSALEVSALPGKLADCSWKEAELCEMYIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILNVE+ + N EI+ +I A+G G+ EDF E RYH
Sbjct: 443 AKQGRDRRFQAILPLRGKILNVEKARLDRILSNAEIRAMITAMGTGIS-EDFDIEKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIR LLLTFF+RY K L + +Y+ PPL+KV++GK + Y Y + E
Sbjct: 502 KLVIMTDADVDGAHIRILLLTFFFRYMKPLIENNYVYIAQPPLFKVKKGKDIHYVYSNEE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K++ + + IQR+KGLGEM QLWETT++P +R + Q+ +EDA +A+ +F+ L
Sbjct: 562 LAKLQDEIGRDRV-EIQRYKGLGEMNAEQLWETTMDPAKRTILQVTMEDAIKADELFTIL 620
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG V+ R+E IQ+ A V NLD
Sbjct: 621 MGDVVEPRREFIQDNAQYVRNLD 643
>gi|385838590|ref|YP_005876220.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris A76]
gi|358749818|gb|AEU40797.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris A76]
Length = 651
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/508 (45%), Positives = 343/508 (67%), Gaps = 14/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG L + D +GT + F PD ++FT ++FD + +A R+RELAF
Sbjct: 150 YFQEYHRGLVRDDLKI----IGETDLRGTTVHFVPDPEIFTETVEFDFDKLATRVRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I+L + EKN+ + + + GG++ YV++LN +K + + F + ++DGI +
Sbjct: 206 LNRGLRISLTDKREGNEKNEVH-FHYEGGIQSYVEYLNENKTVIFEPAIFTEGEMDGIAV 264
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y ++ +AN+I T +GGTH +G + +LTR +N+ K++K +K+ + +L+
Sbjct: 265 EVAMQY-TDTYHSVVMSFANNINTHEGGTHEQGFRTALTRVINNYAKQNKILKENEDNLT 323
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT +ISV+ PNP+FEGQTKT+LGN EV +V++ E LT ++ +P V I
Sbjct: 324 GDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVTGIVNKLFAEALTTFMLENPKVARKI 383
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS PE++E+FIVEGDSAGGS
Sbjct: 384 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNPEQTELFIVEGDSAGGS 443
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G D+ RYH
Sbjct: 444 AKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGG-DYDLSKARYH 502
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PP+Y ++ G + + E
Sbjct: 503 KLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGIKVGSETKEYIQPGE 562
Query: 422 -----LKKVKSSFPSNALY-SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
L++ + + ++QR+KGLGEM QLWETT++PE R++ ++ +EDAAEA+
Sbjct: 563 NQEKDLQEALARWAQGRTKPTVQRYKGLGEMDDHQLWETTMDPEHRLMARVSVEDAAEAD 622
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+N A +D
Sbjct: 623 KIFDMLMGDRVEPRREFIENNAQYSTID 650
>gi|433542996|ref|ZP_20499411.1| DNA gyrase subunit B [Brevibacillus agri BAB-2500]
gi|432185670|gb|ELK43156.1| DNA gyrase subunit B [Brevibacillus agri BAB-2500]
Length = 641
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/503 (46%), Positives = 344/503 (68%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++ +++ G P L + + GT++ F PD +FT F+++ + RIRELAF
Sbjct: 146 HYMRFTVGTPDADLAV----IGETEETGTKVTFKPDPTIFTETTVFEYDVLQKRIRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN L I L+ D+ P++ + + + GG+ ++V++LN +++PLH+ V+ + DG+ +
Sbjct: 202 LNKGLRITLK--DTRPDQEREESFHYEGGIVQFVEYLNKNREPLHEEVIYCEGEKDGLFV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y + +AN+I T +GGTH G K +LTR +N +K +K+KD +LS
Sbjct: 260 EVALQY-NDSYVSNIYSFANNINTHEGGTHETGFKTALTRVINDYSRKFNLLKEKDPNLS 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREG+T IISV++ P+FEGQTKT+LGN E R + + + + ++E +P V +
Sbjct: 319 GDDVREGITAIISVKIQEPQFEGQTKTKLGNSEARSITESVFGDRFSTFMEENPGVAKKV 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AA++AR++ R+KS L S+LPGKLADCSS ESE+FIVEGDSAGGS
Sbjct: 379 VEKALMASRAREAARKAREMTRRKSALEVSALPGKLADCSSKDASESELFIVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILPLRGK+LNVE+ + N EI+ +I ALG GV GEDF RYH
Sbjct: 439 AKSGRDRHFQAILPLRGKVLNVEKARLDKILGNNEIRMIITALGTGV-GEDFDISKARYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDG+HIRTLLLTFFYRY + L + G IY+ PPLY +++GK + Y Y+D +
Sbjct: 498 KVVIMTDADVDGSHIRTLLLTFFYRYMRQLIEAGYIYIAQPPLYSIKQGKTLHYAYNDKQ 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
++ ++ + S+QR+KGLGEM QLWETT++P R L Q+ +EDA EA++VF +L
Sbjct: 558 RDEILATLKATPKPSVQRYKGLGEMNADQLWETTMDPAMRTLLQVNLEDAMEADMVFETL 617
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG V+ R+E I Q+AA++ +LD
Sbjct: 618 MGDEVEPRREFIEQHAASVRDLD 640
>gi|116511733|ref|YP_808949.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris SK11]
gi|125624430|ref|YP_001032913.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris MG1363]
gi|389854795|ref|YP_006357039.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris NZ9000]
gi|116107387|gb|ABJ72527.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris SK11]
gi|124493238|emb|CAL98205.1| topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071217|gb|ADJ60617.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris NZ9000]
Length = 651
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/508 (45%), Positives = 343/508 (67%), Gaps = 14/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG L + D +GT + F PD ++FT ++FD + +A R+RELAF
Sbjct: 150 YFQEYHRGLVRDDLKI----IGETDLRGTTVHFVPDPEIFTETVEFDFDKLATRVRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I+L + EKN+ + + + GG++ YV++LN +K + + F + ++DGI +
Sbjct: 206 LNRGLRISLTDKREGNEKNEVH-FHYEGGIQSYVEYLNENKTVIFEPAIFTEGEMDGIAV 264
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y ++ +AN+I T +GGTH +G + +LTR +N+ K++K +K+ + +L+
Sbjct: 265 EVAMQY-TDTYHSVVMSFANNINTHEGGTHEQGFRTALTRVINNYAKQNKILKENEDNLT 323
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT +ISV+ PNP+FEGQTKT+LGN EV +V++ E LT ++ +P V I
Sbjct: 324 GDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVTGIVNKLFAEALTTFMLENPQVARKI 383
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS PE++E+FIVEGDSAGGS
Sbjct: 384 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNPEQTELFIVEGDSAGGS 443
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G D+ RYH
Sbjct: 444 AKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGG-DYDLSKARYH 502
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PP+Y ++ G + + E
Sbjct: 503 KLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGIKVGSETKEYIQPGE 562
Query: 422 -----LKKVKSSFPSNALY-SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
L++ + + ++QR+KGLGEM QLWETT++PE R++ ++ +EDAAEA+
Sbjct: 563 NQEKDLQEALARWAQGRTKPTVQRYKGLGEMDDHQLWETTMDPEHRLMARVSVEDAAEAD 622
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+N A +D
Sbjct: 623 KIFDMLMGDRVEPRREFIENNAQYSTID 650
>gi|374605476|ref|ZP_09678403.1| DNA gyrase subunit B [Paenibacillus dendritiformis C454]
gi|374388927|gb|EHQ60322.1| DNA gyrase subunit B [Paenibacillus dendritiformis C454]
Length = 636
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/503 (48%), Positives = 336/503 (66%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG P L + + GT IRF PD ++FT + +DH T+ RIRELAF
Sbjct: 143 HQQEYRRGVPQYDLKV----LGDTEETGTTIRFKPDPEIFTDTLVYDHETLVSRIRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN + + L E +D Q + + GG+ E+V++LN +++ +H+ + D IT
Sbjct: 199 LNKGIEMVLTDERND----QTETFKYDGGIIEFVEYLNRNREKMHEPPIYVEGQKDYITC 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y++ + +AN+I T +GGTH G K++LTR +N +K +KD +LS
Sbjct: 255 EIALQY-NDSYTENIYSFANNIHTHEGGTHESGFKSALTRIINEYARKMNLMKDNVSNLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT I+SV++P P+FEGQTKT+LGN EVR +V+ E L E+++ +P + +
Sbjct: 314 GDDVREGLTAIVSVKIPEPQFEGQTKTKLGNSEVRSIVESLFAERLMEFMDENPAISRKV 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A AA+RAR+L R+KS L SSLPGKLADCSS + E+FIVEGDSAGGS
Sbjct: 374 VEKGLQAARARDAARRARELTRRKSALEVSSLPGKLADCSSKDASQCELFIVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPL+GKILNVE+ + N EI+ +I ALG G+ GEDF + RYH
Sbjct: 434 AKQGRDRHFQAILPLKGKILNVEKSRLDKILSNAEIRAIITALGTGI-GEDFDLDKARYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPL+K+ER K V+Y +
Sbjct: 493 KIIIMTDADVDGAHIRTLLLTFFYRYMRRLIEAGYVYIAQPPLFKIERNKVVRYADSEKM 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
++ + F ++QR+KGLGEM QLWETT++PE R + Q+ EDA A+ VF +L
Sbjct: 553 RDEIIAEFGEGVKVNVQRYKGLGEMNAEQLWETTMDPESRSMLQVSFEDAKMADEVFDTL 612
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG V+ R++ IQ A V NLD
Sbjct: 613 MGDNVEPRRDFIQRHAKFVKNLD 635
>gi|269216531|ref|ZP_06160385.1| DNA gyrase, B subunit [Slackia exigua ATCC 700122]
gi|269130060|gb|EEZ61142.1| DNA gyrase, B subunit [Slackia exigua ATCC 700122]
Length = 516
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 235/492 (47%), Positives = 328/492 (66%), Gaps = 10/492 (2%)
Query: 23 VDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKE-DSDPEKN 81
+ + + GT + FWPD ++FT +D++ + R RE+AFLN L I + E D D E N
Sbjct: 28 IGNSKKTGTIVTFWPDPEIFTDTTVYDYSILQNRFREMAFLNRGLHIEMHDERDLDEEGN 87
Query: 82 QYNEYF-FAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYA 140
+ + F +AGG+ ++V++LN K+ L+ + F + T+++A+QW + ++ + +A
Sbjct: 88 PHTDSFQYAGGIVDFVKYLNNGKETLNKPIYFEAENKDGTVEIAMQWTTSYSANGVEAFA 147
Query: 141 NSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP 200
N+I T +GGTH+EG K +LTRT+N + +K+KD +L+G+ REGL+ +ISV++ P
Sbjct: 148 NNINTTEGGTHLEGFKNALTRTINDYARAKGLLKEKDSNLTGDDAREGLSAVISVKLHEP 207
Query: 201 EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARD 260
+FEGQTKT+LGN E+R +V +V + L EYLE +P I++K+ ALKA AA++AR+
Sbjct: 208 QFEGQTKTKLGNTEIRGLVQGAVTKGLAEYLEENPTPAKRIVNKASQALKAREAARKARE 267
Query: 261 LVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKI 320
+ R+K VL S S+PGKLADCSS P EIFIVEGDSAGGSAKQ RDR++QAILPLRGKI
Sbjct: 268 MTRRKGVLDSFSMPGKLADCSSRDPSACEIFIVEGDSAGGSAKQARDRKYQAILPLRGKI 327
Query: 321 LNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLL 380
LNVER ++ I +LI A+G + GED+ E RYH+III+TDADVDGAHIR LL
Sbjct: 328 LNVERAGLHRALSSDTISSLITAIGTNI-GEDYDGEKARYHRIIIMTDADVDGAHIRCLL 386
Query: 381 LTFFYRYQKTLFDEGCIYVGVPPLYKVER-----GKQVQYCYDDAELKKVKSSFPSNALY 435
LTFFYRY L + G +Y+ PPLY +++ GK ++Y Y+D ++ + + Y
Sbjct: 387 LTFFYRYMPDLINRGYVYIAQPPLYGLKKKNSASGKILKYIYNDEAKDELVAKLENPDKY 446
Query: 436 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQN 495
+QR+KGLGEM P QLWETT+ PE R L Q+ IEDAA A + S LMG V+ RKE IQ
Sbjct: 447 EMQRYKGLGEMDPQQLWETTMEPETRTLLQVDIEDAAAAELAVSELMGELVEPRKEFIQK 506
Query: 496 AANLVNLDHLDI 507
A V LDI
Sbjct: 507 HARDVRF--LDI 516
>gi|300853238|ref|YP_003778222.1| DNA gyrase subunit B [Clostridium ljungdahlii DSM 13528]
gi|300433353|gb|ADK13120.1| DNA gyrase, subunit B [Clostridium ljungdahlii DSM 13528]
Length = 637
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 241/504 (47%), Positives = 347/504 (68%), Gaps = 14/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q + RGK + L + + GT+I F PD ++F I++D++T+A R+RELAF
Sbjct: 144 WRQVFKRGKVASGLDI----IGDSEEHGTKIHFKPDAEIFD-EIEYDYDTLAQRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I L E D E+ + + GG++ +V +LN +K+P+H + + D ++
Sbjct: 199 LNKGIKIRLEDERDDKEEI----FHYEGGIKSFVTYLNRNKQPIHKEPIYVEGKKDDYSV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y++ + +AN+I T++GGTH+ G K++LTR N KK +K+ D +LS
Sbjct: 255 EIAIQY-NDGYTENIFAFANNIDTVEGGTHLAGFKSALTRVFNDYAKKFGILKENDKNLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT +ISV++ +P+FEGQTKT+LGN EVR +VD + E L +L+ +P V I
Sbjct: 314 GEDIREGLTAVISVKLVDPQFEGQTKTKLGNSEVRGIVDSIMGESLNNFLQENPQVAKMI 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L KSL A +A AA++AR+L R+KS+L ++SLPGKLADCSS P E EI++VEGDSAGGS
Sbjct: 374 LDKSLMASRAREAARKARELTRRKSILENTSLPGKLADCSSKDPSECEIYLVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R+FQAILPLRGKI+NVE++ + EEI+ +I A G G+ G+DF +RY+
Sbjct: 434 AKQGRNRKFQAILPLRGKIMNVEKQRLDKILGYEEIRAMITAFGAGI-GKDFDVNKIRYN 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFF+RY K L ++ +Y+ PPLY+V +GK+ Y Y D E
Sbjct: 493 KIIIMTDADVDGAHIRTLLLTFFFRYMKELVEKCHVYIAQPPLYRVAKGKKEYYAYSDDE 552
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L + + ++ IQR+KGLGEM QLW+TT+NPE R L Q+ +ED A+ +F+
Sbjct: 553 LDVLLTEIGGKDSNVDIQRYKGLGEMDSEQLWDTTMNPETRTLIQVNVEDTMAADEIFTI 612
Query: 481 LMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA +VNLD
Sbjct: 613 LMGDKVEPRRNFIQENAKKVVNLD 636
>gi|399048558|ref|ZP_10740043.1| DNA gyrase, B subunit [Brevibacillus sp. CF112]
gi|398053620|gb|EJL45794.1| DNA gyrase, B subunit [Brevibacillus sp. CF112]
Length = 641
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 233/503 (46%), Positives = 344/503 (68%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++ +++ G P L + + GT++ F PD +FT F+++ + RIRELAF
Sbjct: 146 HYMRFTVGTPDADLAV----IGETEETGTKVTFKPDPTIFTETTVFEYDVLQKRIRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN L I L+ D+ P++ + + + GG+ ++V++LN +++PLH+ V+ + DG+ +
Sbjct: 202 LNKGLRITLK--DTRPDQEREESFHYEGGIVQFVEYLNKNREPLHEEVIYCEGEKDGLFV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y + +AN+I T +GGTH G K +LTR +N +K +K+KD +LS
Sbjct: 260 EVALQY-NDSYVSNIYSFANNINTHEGGTHETGFKTALTRVINDYSRKFNLLKEKDPNLS 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREG+T IISV++ P+FEGQTKT+LGN E R + + + + ++E +P V +
Sbjct: 319 GDDVREGITAIISVKIQEPQFEGQTKTKLGNSEARSITESVFGDRFSTFMEENPGVAKKV 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AA++AR++ R+KS L S+LPGKLADCSS ESE+FIVEGDSAGGS
Sbjct: 379 VEKALMASRAREAARKAREMTRRKSALEVSALPGKLADCSSKDASESELFIVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILPLRGK+LNVE+ + N EI+ +I ALG GV GEDF RYH
Sbjct: 439 AKSGRDRHFQAILPLRGKVLNVEKARLDKILGNNEIRMIITALGTGV-GEDFDITKARYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDG+HIRTLLLTFFYRY + L + G IY+ PPLY +++GK + Y Y+D +
Sbjct: 498 KVVIMTDADVDGSHIRTLLLTFFYRYMRQLIEAGYIYIAQPPLYSIKQGKTLHYAYNDKQ 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
++ ++ + S+QR+KGLGEM QLWETT++P R L Q+ +EDA EA++VF +L
Sbjct: 558 RDEILATLKATPKPSVQRYKGLGEMNADQLWETTMDPAMRTLLQVNLEDAMEADMVFETL 617
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG V+ R+E I Q+AA++ +LD
Sbjct: 618 MGDEVEPRREFIEQHAASVRDLD 640
>gi|330507223|ref|YP_004383651.1| DNA gyrase subunit B [Methanosaeta concilii GP6]
gi|328928031|gb|AEB67833.1| DNA gyrase, B subunit [Methanosaeta concilii GP6]
Length = 630
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/503 (48%), Positives = 346/503 (68%), Gaps = 17/503 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++ +GK V+ L S D GT I F PD +F +F +T++ R+RELAF
Sbjct: 142 YWQRFEKGKVVSDLEER----GSSDHTGTTITFKPDTSIFEET-EFSFDTLSSRLRELAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN L I ++ + SD E N + +AGG+ +V++LN +K+ LH+ V F + +G +
Sbjct: 197 LNRGLKITIKDDRSDKE----NIFQYAGGIISFVEYLNKNKEVLHEQPVYFSRSKNGTQV 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +++Y++ + YAN I T +GGTH+ G +A+LTRT+N + +K K+ ++ L
Sbjct: 253 EVALQY-NNSYAENIFSYANIINTREGGTHLMGFRAALTRTVNDYARNNKLFKN-EMKLG 310
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGL +ISV++P+P+FEGQTKTRLGN +R +V+ V E L EY E +P V +I
Sbjct: 311 GEDLREGLVAVISVKLPDPQFEGQTKTRLGNSSIRGIVESMVAEGLGEYFEENPLVATTI 370
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+ A++A AA++A++L R+K+ L S LPGKLADCS P + EI+IVEG+SAGGS
Sbjct: 371 VEKAAEAMRAREAARKAKELTRRKNALSSGGLPGKLADCSDNDPAKCEIYIVEGESAGGS 430
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILPLRGKILNVER + KN EI+N+I A G GV G+DF RYH
Sbjct: 431 AKQGRNRHFQAILPLRGKILNVERARLDKILKNAEIRNMIVAFGTGV-GDDFDISKARYH 489
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDG+HIRTLLLTFFYRY + L D G +++ PPLY+V++GKQ Y Y D +
Sbjct: 490 KVVIMTDADVDGSHIRTLLLTFFYRYMRPLIDAGYVFIAQPPLYQVKKGKQANYAYSDEQ 549
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ + IQR+KGLGEM P QLWETT++PE R++ ++ +EDA EA+ +F+ L
Sbjct: 550 LNELVAGMNKPV---IQRYKGLGEMNPEQLWETTMDPEGRIMLRVTLEDAVEADRIFTIL 606
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R+E I+ A V NLD
Sbjct: 607 MGDQVEPRREFIEKHAKYVKNLD 629
>gi|294495525|ref|YP_003542018.1| DNA gyrase subunit B [Methanohalophilus mahii DSM 5219]
gi|292666524|gb|ADE36373.1| DNA gyrase subunit B [Methanohalophilus mahii DSM 5219]
Length = 634
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/503 (46%), Positives = 339/503 (67%), Gaps = 13/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RGKP+ V+ + GT + F PD +F T + F+ T+ R+RELAF
Sbjct: 142 FYQRYVRGKPLD----DVIEKGDTESTGTSMTFKPDTDIFET-VDFNFETLVTRLRELAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN + I + + SD + EY GG+ +V++LN + LH+ + F ++ + +
Sbjct: 197 LNRGIKIVITDKRSDEPLQEVFEY--DGGIVSFVEYLNKSRNVLHEQPIYFEREKEDTRV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+Y + + +AN+I T +GGTH+ G K++LTR N K + K DI LS
Sbjct: 255 EIAMQY-TDSYGEYVYSFANNINTHEGGTHLAGFKSALTRVANDYAKSNNLAK-GDIKLS 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGL IISV++ +P+FEGQTKT+LGN E++ +VD V E L+E++E +P + +I
Sbjct: 313 GDDIREGLAGIISVKLMDPQFEGQTKTKLGNSELKGIVDSMVSEGLSEFMEENPKIASAI 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K++ A +A AAK+AR+L R+KS L S+LPGKLADCS P SEI++VEGDSAGGS
Sbjct: 373 LQKAMDARRAREAAKKARELTRRKSALEVSTLPGKLADCSEKDPSVSEIYLVEGDSAGGS 432
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDRRFQAILP RGKILNVE+ A + KN EI +LI A+G G+ G+++ RYH
Sbjct: 433 AKMGRDRRFQAILPFRGKILNVEKSRLARILKNNEILSLITAMGTGI-GDEYDLTKARYH 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTL+LTFF+RY L D G +Y+ PPLY +++GK ++ Y + E
Sbjct: 492 KVVIMTDADVDGAHIRTLMLTFFFRYMTPLIDAGYVYIAQPPLYSIKKGKNQRFAYTERE 551
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
++ + SIQR+KGLGEM P QLWETT+NP+ R + Q+ +EDA A+ +FS L
Sbjct: 552 KDRIIEEIGEKGV-SIQRYKGLGEMNPDQLWETTMNPQTRTILQVTMEDAVAADEMFSVL 610
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG V R++ IQ +A +++NLD
Sbjct: 611 MGDEVAPRRKFIQEHAKDVINLD 633
>gi|20806552|ref|NP_621723.1| DNA gyrase subunit B [Thermoanaerobacter tengcongensis MB4]
gi|20514990|gb|AAM23327.1| DNA gyrase (topoisomerase II) B subunit [Thermoanaerobacter
tengcongensis MB4]
Length = 654
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 248/504 (49%), Positives = 348/504 (69%), Gaps = 16/504 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG P T L + + GT I F PDK++F I FD++ +A R+RELAF
Sbjct: 163 FRQVYERGVPKTPLEV----IGETEETGTIITFKPDKEIFE-EIVFDYDILAQRLRELAF 217
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD--VVGFRKDVDGIT 120
LN + I L E D ++ +N + GGL +V++LN +K+ LH+ + K+ D
Sbjct: 218 LNKGINIKLIDE-RDGKEEVFN---YEGGLIAFVKYLNRNKEVLHEEPIYMEAKNTD-YE 272
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++ +Q+ +D+Y++ + +AN+I T +GGTH+ G K++LT+ +N KK +KD + +L
Sbjct: 273 VEVCMQY-NDSYNENIYSFANNIDTKEGGTHLIGFKSALTKVINDYAKKYGMIKDGEKNL 331
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
GE VREGLT I+SV++ NP+FEGQTKTRLGNPE+R +V+ V E L+ YLE +P V
Sbjct: 332 QGEDVREGLTAIVSVKLKNPQFEGQTKTRLGNPEMRSIVEGVVTEKLSAYLEENPSVARI 391
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K+L A +A AA++AR+L R+KS L +++LPGKLADCS P + E+FIVEGDSAGG
Sbjct: 392 IVEKALQAARAREAARKARELTRRKSALENTALPGKLADCSEKDPSKCELFIVEGDSAGG 451
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GR+ RFQAILPLRGKILNVE+ ++ NEEI+++I ALG G+ GEDF LRY
Sbjct: 452 SAKAGRNSRFQAILPLRGKILNVEKARLDKIFSNEEIRSIITALGTGI-GEDFDISKLRY 510
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK+II+TDADVDG+HIRTLLLTFF+R+ K L + G IY+ PPLYK+ +GK+V Y Y D
Sbjct: 511 HKVIIMTDADVDGSHIRTLLLTFFFRFMKPLIENGHIYIAQPPLYKITKGKKVYYAYSDR 570
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL K+ S + +QR+KGLGEM QLWETT++PE+R + ++ +EDA A+ +F+
Sbjct: 571 ELDKILSEIGRENIV-VQRYKGLGEMNADQLWETTMDPEKRTMLKVTLEDAIAADEIFTI 629
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG +V+ R+E I+ A V NLD
Sbjct: 630 LMGDKVEPRREFIEKYAKTVRNLD 653
>gi|414074131|ref|YP_006999348.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris UC509.9]
gi|413974051|gb|AFW91515.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris UC509.9]
Length = 651
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 231/508 (45%), Positives = 342/508 (67%), Gaps = 14/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG L + D +GT + F PD ++FT ++FD + +A R+RELAF
Sbjct: 150 YFQEYHRGLVRDDLKI----IGETDLRGTTVHFVPDPEIFTETVEFDFDKLATRVRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I+L + EKN+ + + + GG++ YV++LN +K + + F + ++DGI +
Sbjct: 206 LNRGLRISLTDKREGNEKNEVH-FHYEGGIQSYVEYLNENKTVIFEPAIFTEGEMDGIAV 264
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y ++ +AN+I T +GGTH +G + +LTR +N+ K++K +K+ +L+
Sbjct: 265 EVAMQY-TDTYHSVVMSFANNINTHEGGTHEQGFRTALTRVINNYAKQNKILKENGDNLT 323
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT +ISV+ PNP+FEGQTKT+LGN EV +V++ E LT ++ +P V I
Sbjct: 324 GDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVTGIVNKLFAEALTTFMLENPQVARKI 383
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS PE++E+FIVEGDSAGGS
Sbjct: 384 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNPEQTELFIVEGDSAGGS 443
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G D+ RYH
Sbjct: 444 AKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGG-DYDLSKARYH 502
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PP+Y ++ G + + E
Sbjct: 503 KLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGIKVGSETKEYIQPGE 562
Query: 422 -----LKKVKSSFPSNALY-SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
L++ + + ++QR+KGLGEM QLWETT++PE R++ ++ +EDAAEA+
Sbjct: 563 NQEKDLQEALARWAQGRTKPTVQRYKGLGEMDDHQLWETTMDPEHRLMARVSVEDAAEAD 622
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+N A +D
Sbjct: 623 KIFDMLMGDRVEPRREFIENNAQYSTID 650
>gi|422882008|ref|ZP_16928464.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK355]
gi|332362817|gb|EGJ40611.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK355]
Length = 649
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 235/508 (46%), Positives = 341/508 (67%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+YSRG+ V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 149 HYQEYSRGQVVADLEI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 205 LNRGLRISITDKRDGME--QVKDYHYEGGIASYVQYINENKDVIFETPIYTDGEMDDITV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 263 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 322 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVARKI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P+E+E+FIVEGDSAGGS
Sbjct: 382 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPQETELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 442 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V +Y A
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVYIAQPPIYGVKVGSEVKEYIQPGA 560
Query: 421 ----ELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+ + + + +IQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 561 NQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 620
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 621 KIFDMLMGDRVEPRREFIEENAVYSTLD 648
>gi|237733416|ref|ZP_04563897.1| DNA gyrase subunit B gyrB [Mollicutes bacterium D7]
gi|229383451|gb|EEO33542.1| DNA gyrase subunit B gyrB [Coprobacillus sp. D7]
Length = 641
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 241/505 (47%), Positives = 343/505 (67%), Gaps = 11/505 (2%)
Query: 2 EYHQKYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
EY+Q++ G KP L + D GT + F DK +F +D++T+ RIREL
Sbjct: 144 EYYQRFENGGKPAGELKI----IGDSDITGTIVTFKADKIIFKEGTVYDYDTLRQRIREL 199
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDG-I 119
AFLN L ++L ED ++ +EY++ GG++EYV ++N +K P+H+ + + +D+ I
Sbjct: 200 AFLNKGLRLSL--EDQRNGVDRKHEYYYEGGIKEYVAYINKNKTPIHEEIIYVEDMQQEI 257
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
TI++ +Q+ +D Y + + N+I T +GGTH EG + +LTR +N+ K +K + +
Sbjct: 258 TIEVGMQY-NDGYQSNIYSFCNNINTHEGGTHEEGFRLALTRVINNYAKSKGLLKKDEEA 316
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSG+ VREGLT IISV+ P+P++EGQTKT+LGN EVRK+ + L ++L +PD
Sbjct: 317 LSGDDVREGLTAIISVKHPDPQYEGQTKTKLGNAEVRKIASNIISASLDKFLLENPDTAK 376
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K++ A +A +AAK+AR++ R+K+VL S+LPGKLADCSS E EIFIVEG+SAG
Sbjct: 377 IIVDKAIVAARARMAAKKAREMTRRKNVLEVSNLPGKLADCSSKDASECEIFIVEGNSAG 436
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GRDRR QAILPLRGKILNVE+ + N EI+++I A G G+ GE+F + LR
Sbjct: 437 GSAKMGRDRRIQAILPLRGKILNVEKSRLEKILGNAEIRSMITAFGTGI-GEEFNLDKLR 495
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHKI+I+TDADVDG HIR L+LTF YRY + L + G +Y PPLY ++ GK YCY D
Sbjct: 496 YHKIVIMTDADVDGGHIRILMLTFLYRYLRPLVEGGFVYAAQPPLYLLKHGKDEYYCYSD 555
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL +K+ A YSIQR+KGLGEM QLWETT++PE+R+L Q+ +++A EA+++F
Sbjct: 556 EELDDLKTKIGEGAKYSIQRYKGLGEMNAEQLWETTMDPEKRILNQIDLDEAMEADMIFD 615
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+E IQ NA + +LD
Sbjct: 616 MLMGEKVEPRREFIQENAKYVTDLD 640
>gi|188584649|ref|YP_001916194.1| DNA gyrase subunit B [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179349336|gb|ACB83606.1| DNA gyrase subunit B [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 640
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 231/503 (45%), Positives = 346/503 (68%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +G P T + + D++GT I F PD+++F T ++FD+ + R+++LAF
Sbjct: 147 YQQEYEKGYPKTEIK----EIGESDKRGTEIIFLPDEEIFET-VEFDYQVLRNRLQQLAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN ++I + E D K ++ + + GG++ +V++LN +K L V + +G +
Sbjct: 202 LNRGVSITISDEREDEFKEEH--FKYEGGIKSFVEYLNENKTTLFTPPVYIEGEQEGCKL 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y + + YAN+I T +GGTH G K SLTRT+N ++ +K+ D +L+
Sbjct: 260 EVAIQY-NDGYQEMIHSYANNINTHEGGTHESGFKISLTRTVNDYARRHNLLKNGDKNLT 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REG+T IISV+V +P+FEGQTKT+LGN EVR++V+ V E+L YLE +P V I
Sbjct: 319 GEDIREGITAIISVKVEDPQFEGQTKTKLGNSEVRRIVEGIVSEHLESYLEENPAVGKKI 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
++K+++A +A AA++A++L R+K+ L ++LPGKLADC++ +SE+++VEGDSAGGS
Sbjct: 379 VNKAINASRAREAARKAKELTRRKNALEVTALPGKLADCTTKDASKSELYLVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + NEEI+ +I A+G G+ GE+F RY
Sbjct: 439 AKQGRDREFQAILPLRGKILNVEKARFDKILANEEIKTIITAIGTGI-GEEFDISKARYQ 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLY V++ + Y ++D E
Sbjct: 498 RIIIMTDADVDGAHIRTLLLTFFYRYMRPLIEHGYVYIAQPPLYMVKKKGKHYYTFNDHE 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + + S+QR+KGLGEM P QLWETT+NPE R + + ++DA EA+ +F+ L
Sbjct: 558 LDNLLEEIGKEGI-SLQRYKGLGEMNPTQLWETTMNPESRTVLNVNLQDAIEADKIFTVL 616
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG +V R++ I +NA ++ NLD
Sbjct: 617 MGEKVSPRRKFIEENARDVRNLD 639
>gi|150014898|ref|YP_001307152.1| DNA gyrase subunit B [Clostridium beijerinckii NCIMB 8052]
gi|149901363|gb|ABR32196.1| DNA gyrase, B subunit [Clostridium beijerinckii NCIMB 8052]
Length = 635
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 250/504 (49%), Positives = 349/504 (69%), Gaps = 15/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ QKYS+GK + LT V D+ GT+ F PD ++F I FD ++ R+RELAF
Sbjct: 143 WQQKYSKGKVLNELT----KVGDSDQTGTQTYFKPDAEIFD-EIVFDFEILSQRLRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
LN + I L D EK + + + GG++ +V +LN +K PLH+ + + V D I++
Sbjct: 198 LNKGIYIRLV--DKRDEKEEV--FHYEGGIKSFVSYLNRNKVPLHEEPIYIEGVKDNISV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D Y++ + +AN+I T++GGTH+ G K +LTR N KK +K+ D + +
Sbjct: 254 EVALQY-NDGYTENIFSFANNIDTVEGGTHLVGFKTALTRVFNDYAKKFGHIKENDKNFT 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT +IS+++ P+FEGQTKT+LGN EVR +VD V E + +LE +P++ I
Sbjct: 313 GDDIREGLTGVISIKIEEPQFEGQTKTKLGNSEVRGIVDSIVGENIGIFLEENPNIGKMI 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AA++AR+L R KSVL S+LPGKLADCSS P E EI+IVEGDSAGGS
Sbjct: 373 VDKALMAARARDAARKARELTR-KSVLERSTLPGKLADCSSKDPRECEIYIVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R+FQAILPLRGKILNVE++ + + I+++I A G G+ G DF E +RY+
Sbjct: 432 AKQGRNRKFQAILPLRGKILNVEKQRLDRILNADTIRSMITAFGAGI-GNDFDVEKIRYN 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDADVDGAHIRTLLLTFFYRY + L D+G +Y+ PPLYKV + K+ Y Y D E
Sbjct: 491 RIIIMTDADVDGAHIRTLLLTFFYRYMRNLIDDGHVYIAQPPLYKVSKSKKEYYAYSDPE 550
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L+ V S + IQR+KGLGEM QLW+TT++PE+R+L ++ IEDA A+ +F+
Sbjct: 551 LESVLSELGGKDNSTDIQRYKGLGEMNASQLWDTTMDPEKRILLKVNIEDAMAADEIFTI 610
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ RKE I QNA N+VNLD
Sbjct: 611 LMGEKVEPRKEFIQQNARNVVNLD 634
>gi|402829788|ref|ZP_10878661.1| DNA gyrase, B subunit [Slackia sp. CM382]
gi|402283455|gb|EJU31969.1| DNA gyrase, B subunit [Slackia sp. CM382]
Length = 648
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 237/491 (48%), Positives = 328/491 (66%), Gaps = 11/491 (2%)
Query: 24 DSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKE-DSDPEKNQ 82
DSK + GT + FWPD ++FT +D++ + R RE+AFLN L I + E D D E N
Sbjct: 162 DSK-KTGTTVTFWPDPEIFTDTTVYDYSILQNRFREMAFLNRGLHIEMHDERDLDEEGNP 220
Query: 83 YNEYF-FAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYAN 141
+ + F +AGG+ ++V++LN K+ L+ + F + T+++A+QW + ++ + +AN
Sbjct: 221 HTDSFQYAGGIVDFVKYLNNGKETLNKPIYFEAENKDGTVEIAMQWTTSYSANGVEAFAN 280
Query: 142 SIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPE 201
+I T +GGTH+EG K +LTRT+N + +K+KD +L+G+ REGL+ +ISV++ P+
Sbjct: 281 NINTTEGGTHLEGFKNALTRTINDYARAKGLLKEKDSNLTGDDAREGLSAVISVKLHEPQ 340
Query: 202 FEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 261
FEGQTKT+LGN E+R +V +V + L EYLE +P I++K+ ALKA AA++AR++
Sbjct: 341 FEGQTKTKLGNTEIRGLVQGAVTKGLAEYLEENPTPAKRIVNKASQALKAREAARKAREM 400
Query: 262 VRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKIL 321
R+K VL S S+PGKLADCSS P EIFIVEGDSAGGSAKQ RDR++QAILPLRGKIL
Sbjct: 401 TRRKGVLDSFSMPGKLADCSSRDPSACEIFIVEGDSAGGSAKQARDRKYQAILPLRGKIL 460
Query: 322 NVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLL 381
NVER ++ I +LI A+G + GED+ E RYH+III+TDADVDGAHIR LLL
Sbjct: 461 NVERAGLHRALSSDTISSLITAIGTNI-GEDYDGEKARYHRIIIMTDADVDGAHIRCLLL 519
Query: 382 TFFYRYQKTLFDEGCIYVGVPPLYKVER-----GKQVQYCYDDAELKKVKSSFPSNALYS 436
TFFYRY L + G +Y+ PPLY +++ GK ++Y Y+D ++ + + Y
Sbjct: 520 TFFYRYMPDLINRGYVYIAQPPLYGLKKKNSASGKILKYIYNDEAKDELVAKLENPDKYE 579
Query: 437 IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNA 496
+QR+KGLGEM P QLWETT+ PE R L Q+ IEDA A + S LMG V+ RKE IQ
Sbjct: 580 MQRYKGLGEMDPQQLWETTMEPETRTLLQVDIEDAVAAELAVSELMGELVEPRKEFIQKH 639
Query: 497 ANLVNLDHLDI 507
A V LDI
Sbjct: 640 ARDVRF--LDI 648
>gi|78707359|gb|ABB46485.1| DNA gyrase subunit B [Acholeplasma laidlawii]
gi|78707361|gb|ABB46486.1| DNA gyrase subunit B [Acholeplasma laidlawii]
gi|78707363|gb|ABB46487.1| DNA gyrase subunit B [Acholeplasma laidlawii]
Length = 631
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 241/496 (48%), Positives = 324/496 (65%), Gaps = 13/496 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QKY RG P L S D+ GT I F D +FT + +++ T+ RI++LAF
Sbjct: 140 YEQKYERGIPAYDLKVK----GSTDKSGTIISFQADPLIFTETVIYNYETLRTRIQQLAF 195
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L + L D E+N+ + + GG+ EYV++LN K +H D++ K+ DGIT+
Sbjct: 196 LNKGLKLNLI--DDRFEENKSESFHYEGGITEYVKFLNQSKSKIHNDIIYIDKEQDGITV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+LA+Q+ D+YS + + N+I T +GG H +G K +LTR ++ K KD S+S
Sbjct: 254 ELAMQFV-DSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYADDLKMKKDD--SIS 310
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT IISV+ P P+FEGQTKT+LGNPEVR + Q E + +L +P +I
Sbjct: 311 GEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEAIERFLMENPAQAKAI 370
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AA++A+DL R+KS L + KLADC S PE+SEI+IVEGDSAGGS
Sbjct: 371 VEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDPEKSEIYIVEGDSAGGS 430
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRD FQAI+PLRGK+LNVE+ M N+EI NLI+A+G G+ E F RYH
Sbjct: 431 AKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGISDE-FDITKARYH 489
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTF +R+ + L D G +Y PPLYK+ G+ QY Y++ E
Sbjct: 490 KIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKISWGRNFQYAYNEQE 549
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ + + SIQR+KGLGEM QLW+TT++P +R L Q+ +EDA EA+ VFS L
Sbjct: 550 LNELLKTIETKP--SIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKLEDAIEADQVFSML 607
Query: 482 MGARVDTRKELIQNAA 497
MG V+ RKE IQN A
Sbjct: 608 MGEEVEPRKEFIQNNA 623
>gi|162446893|ref|YP_001620025.1| DNA gyrase subunit B [Acholeplasma laidlawii PG-8A]
gi|161985000|gb|ABX80649.1| DNA gyrase, subunit B [Acholeplasma laidlawii PG-8A]
Length = 635
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 241/496 (48%), Positives = 324/496 (65%), Gaps = 13/496 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QKY RG P L S D+ GT I F D +FT + +++ T+ RI++LAF
Sbjct: 144 YEQKYERGIPAYDLKVK----GSTDKSGTIISFQADPLIFTETVIYNYETLRTRIQQLAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L + L D E+N+ + + GG+ EYV++LN K +H D++ K+ DGIT+
Sbjct: 200 LNKGLKLNLI--DDRFEENKSESFHYEGGITEYVKFLNQSKSKIHNDIIYIDKEQDGITV 257
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+LA+Q+ D+YS + + N+I T +GG H +G K +LTR ++ K KD S+S
Sbjct: 258 ELAMQFV-DSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYADDLKMKKDD--SIS 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT IISV+ P P+FEGQTKT+LGNPEVR + Q E + +L +P +I
Sbjct: 315 GEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEAIERFLMENPAQAKAI 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AA++A+DL R+KS L + KLADC S PE+SEI+IVEGDSAGGS
Sbjct: 375 VEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDPEKSEIYIVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRD FQAI+PLRGK+LNVE+ M N+EI NLI+A+G G+ E F RYH
Sbjct: 435 AKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGISDE-FDITKARYH 493
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTF +R+ + L D G +Y PPLYK+ G+ QY Y++ E
Sbjct: 494 KIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKISWGRNFQYAYNEQE 553
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ + + SIQR+KGLGEM QLW+TT++P +R L Q+ +EDA EA+ VFS L
Sbjct: 554 LNELLKTIETKP--SIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKLEDAIEADQVFSML 611
Query: 482 MGARVDTRKELIQNAA 497
MG V+ RKE IQN A
Sbjct: 612 MGEEVEPRKEFIQNNA 627
>gi|322385201|ref|ZP_08058848.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
cristatus ATCC 51100]
gi|417921915|ref|ZP_12565405.1| DNA gyrase, B subunit [Streptococcus cristatus ATCC 51100]
gi|321270825|gb|EFX53738.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
cristatus ATCC 51100]
gi|342833800|gb|EGU68080.1| DNA gyrase, B subunit [Streptococcus cristatus ATCC 51100]
Length = 649
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/508 (46%), Positives = 340/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG+ V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 149 HYQEYRRGQVVADLEI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 205 LNRGLRISITDKRDGME--QVKDYHYEGGIASYVQYINENKDVIFETPIYTDGEMDDITV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 263 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 322 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVARKI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P+E+E+FIVEGDSAGGS
Sbjct: 382 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNPQETELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RYH
Sbjct: 442 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V +Y A
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYIAQPPIYGVKVGSEVKEYIQPGA 560
Query: 421 ----ELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+ + + +IQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 561 NQEEELQAALEHYSEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 620
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R++ I+ A LD
Sbjct: 621 KIFDMLMGDRVEPRRDFIEKNAVYSTLD 648
>gi|410723309|ref|ZP_11362553.1| DNA gyrase, B subunit [Clostridium sp. Maddingley MBC34-26]
gi|410603355|gb|EKQ57790.1| DNA gyrase, B subunit [Clostridium sp. Maddingley MBC34-26]
Length = 635
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 247/507 (48%), Positives = 348/507 (68%), Gaps = 21/507 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ QKYSRGK + LT + D GT F PD ++F I +D ++ R+RELAF
Sbjct: 143 WQQKYSRGKVLNELT----QIGDSDETGTETYFKPDVEIFDETI-YDFEILSQRLRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I L + D E+ + + GG++ +V +LN +K PLH+ + G + D
Sbjct: 198 LNKGIYIKLIDKRYDKEE----VFHYEGGIKSFVSYLNRNKVPLHEEPIYIEGLK---DN 250
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+++++ALQ+ +D Y++ + +AN+I T++GGTH+ G K +LTR N KK +K+ D
Sbjct: 251 VSVEIALQY-NDGYTENIFTFANNIDTVEGGTHLIGFKTALTRVFNDYAKKFGHIKENDK 309
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+ +G+ +REGLT +ISV++ P+FEGQTKT+LGN EVR +VD V E + +LE +P++
Sbjct: 310 NFTGDDIREGLTAVISVKIEEPQFEGQTKTKLGNSEVRGIVDSIVGENIGVFLEENPNIG 369
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K+L A +A AA++AR+L R KSVL S+LPGKLADCSS P E EI+IVEGDSA
Sbjct: 370 KMIVDKALMAARARDAARKARELTR-KSVLERSTLPGKLADCSSKDPRECEIYIVEGDSA 428
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGR+R+FQAILPLRGKILNVE++ + + I++++ A G G+ G DF E +
Sbjct: 429 GGSAKQGRNRKFQAILPLRGKILNVEKQRLDRILNADTIRSMVTAFGAGI-GNDFDVEKI 487
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RY++III+TDADVDGAHIRTLLLTFFYRY + L D+G +Y+ PPLYKV + K+ Y Y
Sbjct: 488 RYNRIIIMTDADVDGAHIRTLLLTFFYRYMRQLVDDGHVYIAQPPLYKVSKSKKDYYAYS 547
Query: 419 DAELKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
D+EL+ V S + IQR+KGLGEM QLW+TT++PE+R+L ++ IEDA A+ +
Sbjct: 548 DSELENVLSELGGKDNSTDIQRYKGLGEMNASQLWDTTMDPEKRILLKVNIEDAMAADEI 607
Query: 478 FSSLMGARVDTRKELI-QNAANLVNLD 503
F+ LMG +V+ RKE I QNA N+VNLD
Sbjct: 608 FTILMGEKVEPRKEFITQNAKNVVNLD 634
>gi|422871190|ref|ZP_16917683.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK1087]
gi|328945965|gb|EGG40112.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK1087]
Length = 649
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 235/508 (46%), Positives = 341/508 (67%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+YSRG+ V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 149 HYQEYSRGQVVADLEI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 205 LNRGLRISITDKRDGIE--QVKDYHYEGGIASYVQYINENKDVIFETPIYTDGEMDDITV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 263 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 322 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVARKI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P+E+E+FIVEGDSAGGS
Sbjct: 382 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPQETELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 442 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V +Y A
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVYIAQPPIYGVKVGSEVKEYIQPGA 560
Query: 421 ----ELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+ + + + +IQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 561 NQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 620
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 621 KIFDMLMGDRVEPRREFIEENAVYSTLD 648
>gi|255692967|ref|ZP_05416642.1| DNA gyrase, B subunit [Bacteroides finegoldii DSM 17565]
gi|423301203|ref|ZP_17279227.1| DNA gyrase, B subunit [Bacteroides finegoldii CL09T03C10]
gi|260621278|gb|EEX44149.1| DNA gyrase, B subunit [Bacteroides finegoldii DSM 17565]
gi|408471804|gb|EKJ90333.1| DNA gyrase, B subunit [Bacteroides finegoldii CL09T03C10]
Length = 652
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 235/510 (46%), Positives = 339/510 (66%), Gaps = 15/510 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y GKP+ + V V + D GTR +FWPD +FT + +D+ +A R+RELA+
Sbjct: 148 YQQEYEIGKPLYS----VKEVGTSDITGTRQQFWPDGSIFTETV-YDYKILASRLRELAY 202
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I+L R+ ++ + +++ GL E+V+++ + ++ L +DV+ + GI
Sbjct: 203 LNAGLRISLTDRRVVNEDGSFKSEQFYSEEGLREFVRFIESSREHLINDVIYLNSEKQGI 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I++A+ + + +S+ + Y N+I TI+GGTH+ G + +LTRTL + SK ++ +
Sbjct: 263 PIEVAIMYNT-GFSENVHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDSKMLEKVKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT +ISV+V P+FEGQTKT+LGN EV VDQ+V E L+ YLE HP
Sbjct: 322 ISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEVLSYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A A AA++AR++V++KS + LPGKLADCS P + E+F+VEGDSAG
Sbjct: 382 TIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDPSKCELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA-- 357
G+AKQGR+R FQAILPLRGKILNVE+ ++EEI+N+ ALG+ + ED KEA
Sbjct: 442 GTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESEEIRNIYTALGVTIGTEDDSKEANI 501
Query: 358 --LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
LRYHKIII+TDADVDG+HI TL++TFF+RY + G +Y+ PPLY +GK +Y
Sbjct: 502 EKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLYIATPPLYLCTKGKVKEY 561
Query: 416 CYDDAELKKVKSSF--PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
C+ DA+L+ ++ S + IQR+KGLGEM QLW TT++PE RMLKQ+ I++AAE
Sbjct: 562 CWTDAQLQNFIDTYGGGSESAVHIQRYKGLGEMNAEQLWSTTMDPENRMLKQVNIDNAAE 621
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +FS LMG V R+E I+ A N+D
Sbjct: 622 ADYIFSMLMGEDVGPRREFIEENATYANID 651
>gi|307352947|ref|YP_003893998.1| DNA gyrase subunit B [Methanoplanus petrolearius DSM 11571]
gi|307156180|gb|ADN35560.1| DNA gyrase, B subunit [Methanoplanus petrolearius DSM 11571]
Length = 640
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 253/508 (49%), Positives = 350/508 (68%), Gaps = 17/508 (3%)
Query: 3 YHQKYSRGKPVTTLTC--HVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
Y ++RG + LT + P D+ ++ GT+I F PD +F T + FD++ ++ R+REL
Sbjct: 142 YDMGFARGGLKSDLTSRKNAAP-DAFEKHGTKISFKPDALIFET-VTFDYDILSHRMREL 199
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPLH-DVVGF-RKDVD 117
AFLN +TI E SD E++ Y + F + GG+ E+V +L T K+ +H DV+ F KD
Sbjct: 200 AFLNRGITI----EISD-ERSGYADIFNYEGGISEFVTYLITGKETVHPDVIYFDTKDAA 254
Query: 118 GIT-IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
+T +++ALQ+ S AYS+TM+ + NS+ T +GGTH+EG +++LTR +N K + +K
Sbjct: 255 SMTEVEVALQY-STAYSETMMTFVNSVNTREGGTHLEGFRSALTRAINKSAKDNNLMKGM 313
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
SL GE VREGL +IS++V NP+FEGQTK RLGN V+ +VD V + LTEY E +P
Sbjct: 314 SESLKGEDVREGLVTVISLKVANPQFEGQTKMRLGNSNVKGIVDSLVYQSLTEYFEENPK 373
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
V+ +I+SK++ A +A AA++AR+L R+KS L S LPGKLADCS P +SEI+IVEGD
Sbjct: 374 VIQAIVSKAVGAARAREAARKARELARRKSTLESGGLPGKLADCSERDPSKSEIYIVEGD 433
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SAGGSAKQGR R+FQAILPLRGKILNVE+ + + KN EIQ LI A+G G GE F E
Sbjct: 434 SAGGSAKQGRSRQFQAILPLRGKILNVEKANPHRILKNAEIQTLISAIGCGF-GESFDVE 492
Query: 357 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 416
RYH II +TDADVDGAHI TLLLTFFYRY L ++G IY+ PPL++V +GK +Y
Sbjct: 493 KARYHHIIFMTDADVDGAHICTLLLTFFYRYMPELIEKGYIYIAQPPLFRVAKGKNEKYA 552
Query: 417 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
+ + E+K+ F + S+QR+KGLGEM QLW TT+ PE R+LKQ+ + +A+ A+
Sbjct: 553 FSEEEMKRYVKEFGDKGV-SVQRYKGLGEMNADQLWHTTMAPESRVLKQVSVIEASYADE 611
Query: 477 VFSSLMGARVDTRKE-LIQNAANLVNLD 503
+FS LMG V+ RKE +I+++ + NLD
Sbjct: 612 IFSKLMGDDVEARKEFIIRHSKEVTNLD 639
>gi|295694693|ref|YP_003587931.1| DNA gyrase subunit B [Kyrpidia tusciae DSM 2912]
gi|295410295|gb|ADG04787.1| DNA gyrase, B subunit [Kyrpidia tusciae DSM 2912]
Length = 635
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 244/503 (48%), Positives = 343/503 (68%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+YSRG PVT L + DR GT++ F PD ++F + F ++ + GR+RELAF
Sbjct: 144 YRQRYSRGVPVTPLER----LGPTDRTGTQVTFKPDPEIFEDVV-FQYDILQGRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN +TI L ED+ + Q E+ + GG+ +V++LN K+ LH V + D + +
Sbjct: 199 LNAGITIIL--EDARDGRRQ--EFAYQGGIRSFVEYLNRSKEVLHQPPVYIAAEKDDVMV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D Y ++ +AN+I T +GGTH G K++LTR +N +K+ +KD D +++
Sbjct: 255 EVALQY-NDGYVPSLYSFANNIHTHEGGTHESGFKSALTRVINDYARKNNLLKDSDSNVT 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IISV++P+P+FEGQTKT+LGN EVR +V+ + E +LE +P V I
Sbjct: 314 GEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEVRGIVESAFGERFVVFLEENPAVARKI 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K ++A +A AA++AR+L R+K+ L SSLPGKL DCSS ESE+++VEGDSAGGS
Sbjct: 374 VDKCITAARAREAARKARELTRRKNALEVSSLPGKLWDCSSKDASESELYLVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILPLRGKILNVE+ + N EI+ +I A+G G++ DF RYH
Sbjct: 434 AKSGRDRHFQAILPLRGKILNVEKARMDKILSNNEIRAIITAIGTGIE-PDFDISRARYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDG+HIRTLLLTFFYRY + L + G +Y+ PPLY++++GK V+Y Y D E
Sbjct: 493 KVVIMTDADVDGSHIRTLLLTFFYRYMRPLIEAGYVYIAQPPLYRIQKGKVVRYAYSDQE 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
+ + + IQR+KGLGEM QLWETT++PE R L Q+ ++DA EA+ +FS L
Sbjct: 553 RDHIVGELKGD-VNDIQRYKGLGEMDAEQLWETTMDPESRTLLQVSMQDAIEADAIFSVL 611
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG RV+ R+E I+ A+ V NLD
Sbjct: 612 MGDRVEPRREFIEAHAHFVRNLD 634
>gi|258646055|ref|ZP_05733524.1| DNA gyrase, B subunit [Dialister invisus DSM 15470]
gi|260403425|gb|EEW96972.1| DNA gyrase, B subunit [Dialister invisus DSM 15470]
Length = 649
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 248/505 (49%), Positives = 349/505 (69%), Gaps = 14/505 (2%)
Query: 3 YHQ-KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+H+ K +RG +T H+ GT++ F PD ++F FD++T+ R+RELA
Sbjct: 154 FHEMKLARG----VVTQHMKTFGETTETGTQVTFKPDGEIFKEGTDFDYDTLKVRMRELA 209
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD--VVGFRKDVDGI 119
FLN LTI L D + + +AGG+ E++++LN + K L D V+ F + D +
Sbjct: 210 FLNKGLTITL--TDVRDGATHQDVFCYAGGIVEFIKFLN-EGKDLVDPGVISFEGEKDRV 266
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+D+A+Q+ + YS++M + N+I T++GG H+ G + +LTRT+N + + +K + +
Sbjct: 267 IVDIAMQYQA-GYSESMYTFVNNINTVEGGMHLTGFRNALTRTINDYARSNNLLKPNEEN 325
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSG+ VREGLTC+ISV+VPNP+FEGQTKT+LGN +V+ +VD V + L YLE HP
Sbjct: 326 LSGDDVREGLTCVISVKVPNPQFEGQTKTKLGNQDVKGIVDTIVSDGLRTYLEEHPAEAK 385
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+SKS++A +A AA+RAR+L R+K+ L SSLPGKLADCS P+ +EI+IVEGDSAG
Sbjct: 386 EIISKSITANRAREAARRARELTRRKNALEVSSLPGKLADCSEKDPKFTEIYIVEGDSAG 445
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GRDRR+QAILPLRGKILNVE+ + ++ I+ +I A G GV EDF + LR
Sbjct: 446 GSAKSGRDRRYQAILPLRGKILNVEKARLDKVLNSDAIRTMITAFGTGV-AEDFDIKKLR 504
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
Y+KIII+TDADVDGAHIRTLLLTFFYRY K L EG +Y+ PPLY+V +G+Q Y YDD
Sbjct: 505 YYKIIIMTDADVDGAHIRTLLLTFFYRYMKPLITEGHVYIAQPPLYQVRKGRQKYYTYDD 564
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
E K+ + + +IQR+KGLGEM P QLW+TT+NPEQR++ ++ + DA EA+ +F+
Sbjct: 565 VEQDKLLNEIGRDGC-AIQRYKGLGEMNPEQLWDTTMNPEQRVMLKVELTDAVEADRLFT 623
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R++ I+ NA N+ NLD
Sbjct: 624 ILMGDKVEPRRKFIEDNAKNVSNLD 648
>gi|254555174|ref|YP_003061591.1| DNA gyrase, B subunit [Lactobacillus plantarum JDM1]
gi|300769110|ref|ZP_07078999.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308179196|ref|YP_003923324.1| DNA gyrase, B subunit [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380031107|ref|YP_004888098.1| DNA gyrase subunit B [Lactobacillus plantarum WCFS1]
gi|418273681|ref|ZP_12889263.1| DNA gyrase, B subunit [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448819755|ref|YP_007412917.1| DNA gyrase subunit B [Lactobacillus plantarum ZJ316]
gi|254044101|gb|ACT60894.1| DNA gyrase, B subunit [Lactobacillus plantarum JDM1]
gi|300493350|gb|EFK28529.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308044687|gb|ADN97230.1| DNA gyrase, B subunit [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|342240350|emb|CCC77584.1| DNA gyrase, B subunit [Lactobacillus plantarum WCFS1]
gi|376010387|gb|EHS83712.1| DNA gyrase, B subunit [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448273252|gb|AGE37771.1| DNA gyrase subunit B [Lactobacillus plantarum ZJ316]
Length = 648
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 238/499 (47%), Positives = 331/499 (66%), Gaps = 7/499 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ + RGK T + ++ D GT + F PD +F +D N + RIRELAF
Sbjct: 151 YYMDFERGKVKTPMK--IIGDAPDDAHGTAVHFVPDPDIFRETTTYDINILTTRIRELAF 208
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I +R D+ P++ +++ + GG+ YV++L+ +K L + + + +GIT+
Sbjct: 209 LNKGLRITIR--DNRPDEPTEDDFLYEGGIRHYVEYLDKNKTVLFPEPIYVEGEQNGITV 266
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ D +S+ M + N+I T +GGTH EG K +LTR +N +K+ +K+ D +LS
Sbjct: 267 EVALQYTDDYHSNLMT-FTNNIHTYEGGTHEEGFKRALTRVINDYARKNNLLKESDANLS 325
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG+T ++SV+ P+P+FEGQTKT+LGN + R VD+ E+ ++YL +P V +
Sbjct: 326 GEDVREGMTAVVSVKHPDPQFEGQTKTKLGNSDARAAVDRLFSEHFSKYLMENPSVARKV 385
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A KA +AAKRAR++ R+KS L S+LPGKLAD SS PE SE+FIVEGDSAGGS
Sbjct: 386 VDKGLLASKARVAAKRAREVTRKKSGLEISNLPGKLADNSSKDPEISELFIVEGDSAGGS 445
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R QAILP+RGKILNVE+ + NEEI++L A+G G G DF YH
Sbjct: 446 AKQGRSRLTQAILPIRGKILNVEKASIDKILANEEIRSLFTAMGTGFGG-DFDLSKANYH 504
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLT FYRY + L D G +Y+ PPLY+V +GK V+Y D E
Sbjct: 505 KLIIMTDADVDGAHIRTLLLTLFYRYMRPLVDAGFVYIAQPPLYQVRQGKFVKYIDSDEE 564
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L +V + +QR+KGLGEM QLWETT++P++R L ++ EDAA+A+ VFS L
Sbjct: 565 LSEVMGQLAPSPKPVVQRYKGLGEMDAEQLWETTMDPDKRRLLRVRDEDAADADGVFSML 624
Query: 482 MGARVDTRKELIQNAANLV 500
MG +V R+E I++ A V
Sbjct: 625 MGDQVKPRREFIEDNAKFV 643
>gi|333372855|ref|ZP_08464776.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Desmospora sp. 8437]
gi|332971209|gb|EGK10172.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Desmospora sp. 8437]
Length = 641
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 241/502 (48%), Positives = 337/502 (67%), Gaps = 13/502 (2%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQ-GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFL 63
Q+Y +G P + L V K ++ GTRI F PD ++FT ++D+ + R+RELAFL
Sbjct: 149 QRYRKGVPESDLQ-----VTGKTKETGTRITFKPDPEIFTETTEYDYEILQNRLRELAFL 203
Query: 64 NPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITID 122
N L I L E + + NE+ + GG+ +V+ LN +++ LH F + + + +
Sbjct: 204 NQGLRIMLSDERGE---GKSNEFKYDGGIRSFVEHLNKNRESLHQPPIFIEGEKEELVVQ 260
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+ALQ+ +D +S + YAN+I T +GGTH G K++LTR +N ++ +K+ D +LSG
Sbjct: 261 IALQY-NDGFSSNLYSYANNIHTHEGGTHEAGFKSALTRVINDYARRHNLLKENDNNLSG 319
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+ REGLT IIS+++P+P+FEGQTKT+LGN E R V + E +LE +P V ++
Sbjct: 320 DDTREGLTAIISIKIPDPQFEGQTKTKLGNSEARTVTESIFAEQFLAFLEENPAVSKKVI 379
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
+K++ A +A AA++AR+L R+K+ L SSLPGKLADC+S E SE+++VEGDSAGG+A
Sbjct: 380 NKAVMAARAREAARKARELTRRKNALEVSSLPGKLADCTSRKAEISELYLVEGDSAGGTA 439
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQGRDR FQAILPLRGKILNVE+ NEEI+ + ALG G+ GEDF+ E RYHK
Sbjct: 440 KQGRDRMFQAILPLRGKILNVEKARLDKALSNEEIRTITTALGTGI-GEDFQLEKARYHK 498
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
I+I+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLYK+ +GK+V Y +DD E
Sbjct: 499 IMIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGYVYIAQPPLYKITQGKKVLYAFDDREK 558
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
++ S +QR+KGLGEM QLWETT++PE R L Q+ +EDA +A+ VF +LM
Sbjct: 559 DRIVSELEDKGKVELQRYKGLGEMTATQLWETTMDPESRTLLQVSLEDALDADQVFETLM 618
Query: 483 GARVDTRKELIQNAANLV-NLD 503
G +V+ R+E IQ A V NLD
Sbjct: 619 GEKVEPRREFIQEYAKQVRNLD 640
>gi|282855958|ref|ZP_06265249.1| DNA gyrase, B subunit [Pyramidobacter piscolens W5455]
gi|282586177|gb|EFB91454.1| DNA gyrase, B subunit [Pyramidobacter piscolens W5455]
Length = 632
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 238/505 (47%), Positives = 342/505 (67%), Gaps = 15/505 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
E+H+++ RG PV+ LT ++GT + F PD ++F + F T+ R RE+A
Sbjct: 139 EWHERFERGTPVSGLTGGT----PTAKRGTTVTFRPDAEIFDE-VAFSAETLGNRFREMA 193
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
FL P L D + + Y + GG+ E+V ++N K+ L + R + DG+
Sbjct: 194 FLIPGLKFIF----VDEAEGKTWTYHYEGGVSEFVAYINKGKQTLTPRPIVIRGEKDGVA 249
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
++ Q+ +D Y + + +AN I TI+GGTH+ G++++LTR +N +++ +K+KD +L
Sbjct: 250 VEAGFQY-TDEYIERLYSFANLINTIEGGTHVAGLRSALTRGINEGARRAGVLKEKDENL 308
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ +REGLTC++SV++ NP+FEGQTKT+LGN V+ +VD + + + + LE P V+
Sbjct: 309 SGDDLREGLTCVLSVKLGNPQFEGQTKTKLGNGNVKGIVDSLLYDGILQALEEDPSVIKP 368
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K++ A +A AAK+AR+LVR KS L SLPGKLADCSS T E E++IVEGDSAGG
Sbjct: 369 IIEKAIKARQAREAAKKARELVR-KSALSGLSLPGKLADCSSRTAENCEVYIVEGDSAGG 427
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR+FQAILPLRGKILNVE+ M ++EI+ +I+ALG G+ GEDF LRY
Sbjct: 428 SAKQGRDRKFQAILPLRGKILNVEKARMDKMLGSKEIRVIIQALGCGI-GEDFDIGKLRY 486
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
+KIII+TDADVDGAHI TLLLTFF+R+ + L ++G +Y VPPLY+V+ GK+V Y Y D
Sbjct: 487 NKIIIMTDADVDGAHISTLLLTFFFRHMRELIEKGHVYQAVPPLYRVQVGKKVDYLYSDK 546
Query: 421 ELKKVKSSFPSNA-LYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K ++ ++QR+KGLGEM P QLWETT++P R+LKQ+ ++D A A+ F
Sbjct: 547 ELRKFMDGLAADGKKAAVQRYKGLGEMNPGQLWETTMDPATRLLKQIELDDLAGADEYFD 606
Query: 480 SLMGARVDTRKELI-QNAANLVNLD 503
LMG RV+ R++ I Q+A + NLD
Sbjct: 607 ILMGDRVEPRRQFIEQHAHEVHNLD 631
>gi|108802861|ref|YP_642798.1| DNA gyrase subunit B [Rubrobacter xylanophilus DSM 9941]
gi|108764104|gb|ABG02986.1| DNA gyrase subunit B [Rubrobacter xylanophilus DSM 9941]
Length = 644
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 233/503 (46%), Positives = 340/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG PVT L + ++ GT +RF PD Q+F T ++F +T++ R RE AF
Sbjct: 149 WTQRYERGFPVTGLE-RGRKLGKREGTGTTVRFRPDPQIFET-VEFSFDTLSRRFRESAF 206
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN L I L E E+ + Y + GG++++V +N K P+H ++ F ++ + +
Sbjct: 207 LNKGLRIRLADER---EEGREVVYRYEGGIKDFVAHINEAKDPVHKTILYFHREEEAGDV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+QW S Y D++ +AN+I T +GGTH+ G +A+LTRT+N ++ +K+K+ +L+
Sbjct: 264 EVAMQWNS-GYQDSVFTFANNINTHEGGTHLSGFRAALTRTINEYARQKGLLKEKEENLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGL +ISV++ P+FEGQTKT+LGN E++ +V+ + +L E+LE +P +I
Sbjct: 323 GDDIREGLAAVISVKLREPQFEGQTKTKLGNTEIKGLVESATNRHLAEFLEENPGQARAI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
++K+++A +A LAA +AR +R K L SS+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 383 VTKAINASRARLAASKARKAIR-KGYLESSTLPGKLADCSSKDPARSELYIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + + N EIQ +I A+G GV G+ F E RYH
Sbjct: 442 AKQGRDRNFQAILPLRGKILNVEKANINKVLSNAEIQAMISAIGAGV-GDSFNIEEARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDG+HIRTL+LTF YR L + G +Y+ PPLYK+ ++ Y Y DAE
Sbjct: 501 KIVIMTDADVDGSHIRTLVLTFLYRNMPELIEAGYVYIAQPPLYKITHNRRDVYVYSDAE 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ ++ ++ RFKGLGEM P QLWETT++P R L Q+ I+ AA A+ +F++L
Sbjct: 561 LQETLRRLRADGSATVSRFKGLGEMNPQQLWETTMDPANRTLLQVTIDSAATADELFTAL 620
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ RK I+ NA N+D
Sbjct: 621 MGDKVEPRKAFIEANAREAKNID 643
>gi|371777742|ref|ZP_09484064.1| DNA gyrase subunit B [Anaerophaga sp. HS1]
Length = 656
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 236/510 (46%), Positives = 344/510 (67%), Gaps = 15/510 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RGKP+ + V + D+ GT I F PD +F ++ ++ +AGR+RELAF
Sbjct: 152 FRQEYERGKPL----APIREVGTTDQTGTAITFMPDSTIFNNT-EYKYSVLAGRMRELAF 206
Query: 63 LNPKLTIALR-KEDSDPEKNQYNEYFFA-GGLEEYVQWLNTDKKPLHDVVGFRKDV-DGI 119
LN L I L K + D E N +E F++ GL E+V +++ +++PL + F V + I
Sbjct: 207 LNAGLEIILTDKREKDEEGNFKSERFYSKDGLIEFVNFIDDNREPLIEKPIFISTVKNDI 266
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+D+A+ + + ++++ + Y N+I TI+GGTH+ G + LTRTL + +KS
Sbjct: 267 PVDIAILYNT-SFNENVYSYVNNINTIEGGTHLTGFRRGLTRTLKNWAEKSGMFSKLKFD 325
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT +ISV+V P+FEGQTKT+LGN +V VDQ+V L+ YLE +P
Sbjct: 326 ISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNSDVSLAVDQAVSTMLSNYLEENPKDAK 385
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I++K + A A AA++AR+LV++KSVL LPGKLADCS PE++EIF+VEGDSAG
Sbjct: 386 AIVNKVILAATARHAARKARELVQRKSVLSGGGLPGKLADCSVRDPEKAEIFLVEGDSAG 445
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK---- 355
G+AKQGRDRRFQAILPLRGKILNVE+ + +++NEEI+N+ ALG+ + E+ K
Sbjct: 446 GTAKQGRDRRFQAILPLRGKILNVEKALQHKVFENEEIKNIFTALGVTIGTEEDSKALNL 505
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
+ LRYHKI+I+TDADVDG+HI TL++TFF+RY K L +G +Y+ PPLY +++GK +Y
Sbjct: 506 DKLRYHKIVIMTDADVDGSHIATLIMTFFFRYMKDLIKKGYLYIATPPLYFLKKGKIEEY 565
Query: 416 CYDDAELKKVKSSFPSNA--LYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
C+ DA+ ++ + + +QR+KGLGEM QLW TT+NPE+R+L+Q+ E+AAE
Sbjct: 566 CWTDAQRREFIEKYANGKEDTVHVQRYKGLGEMNAEQLWMTTMNPEKRLLRQVTYENAAE 625
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +FS LMG V R+E I+ A N+D
Sbjct: 626 ADRIFSMLMGDDVPPRREFIEKNATYANID 655
>gi|376259386|ref|YP_005146106.1| DNA gyrase subunit B [Clostridium sp. BNL1100]
gi|373943380|gb|AEY64301.1| DNA gyrase, B subunit [Clostridium sp. BNL1100]
Length = 642
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 249/511 (48%), Positives = 347/511 (67%), Gaps = 19/511 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QKYSRGKPVT++ V + GT F PD ++F I FD + + R RE+AF
Sbjct: 145 YKQKYSRGKPVTSVEI----VGETEESGTITTFKPDPEIFED-IVFDFDAMITRYREMAF 199
Query: 63 LNPKLTIALRKEDSDP--EKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN + I L E D EKN + E GG+ +V++LN K+PLHD V+ F D
Sbjct: 200 LNRGIKIKLIDERPDEIIEKNLHYE----GGIISFVEYLNKTKEPLHDKVIYFEGTRDAN 255
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+Q+ +D Y++T+ YAN+I T +GGTH+ G + ++T+ LN +K +K+ D +
Sbjct: 256 IVEVAMQY-NDNYNETVFSYANNIATTEGGTHLTGFRTAITKVLNDYARKFNIIKENDKN 314
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSGE VREGLT +ISV++P P+FEGQTKT+LGN E+R +V+ V + L +LE +P +
Sbjct: 315 LSGEDVREGLTAVISVKLPEPQFEGQTKTKLGNSEIRTLVENVVSDKLNIFLEENPSIAK 374
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
IL KSL+A +A AA++AR+L R+KS + SS+LPGKLADCS P ++EIFIVEGDSAG
Sbjct: 375 IILDKSLTAARAREAARKARELTRRKSAMDSSTLPGKLADCSEKDPTKTEIFIVEGDSAG 434
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDRR QAILPL GK+LNVE+ ++ NE++ +I ALG G+ G+DF LR
Sbjct: 435 GSAKQGRDRRIQAILPLWGKMLNVEKSRLDKVFDNEKLAPVIIALGAGI-GDDFDTSKLR 493
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
Y KIII+ DADVDG+HIR LLLTFF+RY + L ++G +Y+ +PPL+KV +GK+ Y YDD
Sbjct: 494 YDKIIIMADADVDGSHIRMLLLTFFFRYMRPLVEQGHVYIAMPPLFKVYKGKEEFYAYDD 553
Query: 420 AELKKV---KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
++ K+ + + +IQRFKGLGEM P QLWETT++PE R + ++ ++DA A+
Sbjct: 554 RQVTKIYEERGWRKDDPNVNIQRFKGLGEMNPDQLWETTMDPETRTIIKVDVQDAITADE 613
Query: 477 VFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
VFS MG +V+ RKE I A ++ +LDI
Sbjct: 614 VFSMFMGEKVEPRKEYIHMHAK--DVTYLDI 642
>gi|169823702|ref|YP_001691313.1| DNA gyrase B subunit [Finegoldia magna ATCC 29328]
gi|167830507|dbj|BAG07423.1| DNA gyrase B subunit [Finegoldia magna ATCC 29328]
Length = 638
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 246/507 (48%), Positives = 351/507 (69%), Gaps = 17/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++ +GK VT LT V GT I F PD +F T + FD N +A R RE+AF
Sbjct: 142 YEQRFEKGKTVTGLTVVKENVRG---TGTTIEFMPDDTIFET-LNFDKNVLAKRFREMAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGIT 120
LN + I E SD E++ Y E F + GG++ +V+++N KKPL H+V+ + D
Sbjct: 198 LNKGVKI----EFSD-ERDGYKELFHYEGGIKSFVEYINKSKKPLDHEVMYIEGEKDTTK 252
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q+ +++Y++T++ + N+I+T+DGGTH+ G K++LTR LN + +K+KD +L
Sbjct: 253 VEIAMQY-TESYNETIVSFTNNIKTVDGGTHVVGFKSALTRALNDYARNKNILKEKDDNL 311
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ VREG+T ++SV++ NP+FEGQTK +LGN E R VVD V E+L+ Y E +P ++ +
Sbjct: 312 SGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTVVDSVVYEHLSFYFEENPKIVRT 371
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K+L++ KA LAA+RARDLVR+KSVL +++LPGKLADC S+ E +EIF+VEGDSAGG
Sbjct: 372 IIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLADCQSSDIEYNEIFLVEGDSAGG 431
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GRD +FQAILPLRGKILNVE+ + +EEI+ +I A G G+ G++F LRY
Sbjct: 432 SAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSEEIKAMITAFGTGI-GKNFDISKLRY 490
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG-KQVQYCYDD 419
KI+I+TDADVDGAHIRTLLLTF YR+ K L ++G +Y+ PPLY + +G K ++YCY +
Sbjct: 491 GKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYIAQPPLYGIIKGVKVMEYCYTE 550
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI--EDAAEANVV 477
EL++ + + +QR+KGLGEM QLW+TT+NPE R+L ++ I ED E +
Sbjct: 551 QELEEALEKYGERSNIKVQRYKGLGEMNAEQLWDTTMNPEHRILIKVEIDGEDENELDNT 610
Query: 478 FSSLMGARVDTRKELI-QNAANLVNLD 503
F LMG V+ R+E I QNA N+D
Sbjct: 611 FDVLMGDNVEPRREFIEQNAVYAQNID 637
>gi|401683255|ref|ZP_10815143.1| DNA gyrase, B subunit [Streptococcus sp. AS14]
gi|400183333|gb|EJO17589.1| DNA gyrase, B subunit [Streptococcus sp. AS14]
Length = 649
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 235/508 (46%), Positives = 340/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+YSRG+ V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 149 HYQEYSRGQVVADLEI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 205 LNRGLRISITDKRDGME--QAKDYHYEGGIASYVQYINENKDVIFETPIYTDGEMDDITV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 263 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 322 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVARKI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P+E+E+FIVEGDSAGGS
Sbjct: 382 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPQETELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 442 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G V +Y A
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVYIAQPPIYGVKVGSDVKEYIQPGA 560
Query: 421 ----ELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+ + + + +IQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 561 NQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 620
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 621 KIFDMLMGDRVEPRREFIEENAVYSTLD 648
>gi|325299173|ref|YP_004259090.1| DNA gyrase subunit B [Bacteroides salanitronis DSM 18170]
gi|324318726|gb|ADY36617.1| DNA gyrase, B subunit [Bacteroides salanitronis DSM 18170]
Length = 654
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 241/512 (47%), Positives = 331/512 (64%), Gaps = 17/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y+ GKP+ V V + D GTR FWPD +FT ++ +N + R+RELA+
Sbjct: 148 YQQEYACGKPLYP----VKEVGTTDITGTRQTFWPDASIFTVT-EYKYNILQARMRELAY 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAG--GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN +TI L + E Y + F G++E+V++LN+ PL DV+ + G+
Sbjct: 203 LNKGITITLTDKREKEEDGSYKQEVFHSEEGVKEFVRFLNSTNTPLIDDVIYLNTEKQGV 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I+ A+ + + + + + Y N+I TI+GGTH G + +LTR L + SK ++ +
Sbjct: 263 PIECAIMY-NTGFRENLHSYVNNINTIEGGTHEAGFRTALTRVLKKYAEDSKALEKAKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SGE REGL +ISV+V P+FEGQTKT+LGN EV V+Q+V E LT YLE HP
Sbjct: 322 ISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNNEVSGAVNQAVGEALTYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A A +AA++AR+ V++KS + LPGKLADCSS TPEE E+F+VEGDSAG
Sbjct: 382 LIVDKVVLAATARIAARKARESVQRKSPMGGGGLPGKLADCSSRTPEECELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GV-KGEDFKK- 355
GSAKQGR R+FQAILPLRGKILNVE+ ++++E+ N+I+ALG+ GV ED KK
Sbjct: 442 GSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQALGVRFGVDDSEDSKKA 501
Query: 356 --EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV 413
+ LRY+K+II+TDADVDG+HI TL++T FYRY + G +Y+ PPLYK +GK
Sbjct: 502 NIDKLRYNKVIIMTDADVDGSHIDTLIMTLFYRYMPEVIQGGHLYIANPPLYKCSKGKVS 561
Query: 414 QYCYDDAELKKVKSSFPSNALYSI--QRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
+YCY D E + + I QR+KGLGEM P QLWETT+NPE R+LKQ+ IE+A
Sbjct: 562 EYCYTDEERQAFMQKYGDGTETGIHTQRYKGLGEMNPEQLWETTMNPETRILKQVSIENA 621
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AEA+ +FS LMG V R+E I+ A N+D
Sbjct: 622 AEADYIFSMLMGDDVAPRREFIEKHATYANID 653
>gi|254478916|ref|ZP_05092278.1| DNA gyrase, B subunit [Carboxydibrachium pacificum DSM 12653]
gi|214035138|gb|EEB75850.1| DNA gyrase, B subunit [Carboxydibrachium pacificum DSM 12653]
Length = 654
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 248/504 (49%), Positives = 347/504 (68%), Gaps = 16/504 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG P T L + + GT I F PDK++F I FD++ +A R+RELAF
Sbjct: 163 FRQVYERGVPKTPLEV----IGETEETGTIITFKPDKEIFE-EIVFDYDILAQRLRELAF 217
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD--VVGFRKDVDGIT 120
LN + I L E D ++ +N + GGL +V++LN +K+ LH+ + K+ D
Sbjct: 218 LNKGINIKLIDE-RDGKEEVFN---YEGGLIAFVKYLNRNKEVLHEEPIYMEAKNTD-YE 272
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++ +Q+ +D+Y++ + +AN+I T +GGTH+ G K++LT+ +N KK +KD + +L
Sbjct: 273 VEVCMQY-NDSYNENIYSFANNIDTKEGGTHLIGFKSALTKVINDYAKKYGMIKDGEKNL 331
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
GE VREGLT I+SV++ NP+FEGQTKTRLGNPE+R +V+ V E L+ YLE +P V
Sbjct: 332 QGEDVREGLTAIVSVKLKNPQFEGQTKTRLGNPEMRSIVEGVVTEKLSAYLEENPSVARI 391
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K+L A +A AA++AR+L R+KS L +++LPGKLADCS P + E+FIVEGDSAGG
Sbjct: 392 IVEKALQAARAREAARKARELTRRKSALENTALPGKLADCSEKDPSKCELFIVEGDSAGG 451
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GR+ RFQAILPLRGKILNVE+ + NEEI+++I ALG G+ GEDF LRY
Sbjct: 452 SAKAGRNSRFQAILPLRGKILNVEKARLDKILSNEEIRSIITALGTGI-GEDFDISKLRY 510
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK+II+TDADVDG+HIRTLLLTFF+R+ K L + G IY+ PPLYK+ +GK+V Y Y D
Sbjct: 511 HKVIIMTDADVDGSHIRTLLLTFFFRFMKPLIENGHIYIAQPPLYKITKGKKVYYAYSDR 570
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL K+ S + +QR+KGLGEM QLWETT++PE+R + ++ +EDA A+ +F+
Sbjct: 571 ELDKILSEIGRENIV-VQRYKGLGEMNADQLWETTMDPEKRTMLKVTLEDAIAADEIFTI 629
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG +V+ R+E I+ A V NLD
Sbjct: 630 LMGDKVEPRREFIEKYAKTVRNLD 653
>gi|170756292|ref|YP_001779632.1| DNA gyrase subunit B [Clostridium botulinum B1 str. Okra]
gi|429247632|ref|ZP_19210871.1| DNA gyrase subunit B [Clostridium botulinum CFSAN001628]
gi|169121504|gb|ACA45340.1| DNA gyrase, B subunit [Clostridium botulinum B1 str. Okra]
gi|428755345|gb|EKX77977.1| DNA gyrase subunit B [Clostridium botulinum CFSAN001628]
Length = 637
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/504 (48%), Positives = 351/504 (69%), Gaps = 14/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ QK+ RG T L V + GT+I F PD ++F ++F+++T+A R+RELAF
Sbjct: 144 WKQKFERGITKTGLDI----VGDTEDHGTKIYFKPDIEIFD-ELEFEYDTLAHRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN + I+L E D ++ + + GGL +V +LN +K+ LH + ++ DG +
Sbjct: 199 LNKGIKISLTDERYDKKEM----FHYEGGLRSFVLYLNRNKEKLHQQPIYVDENKDGCIV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y++ + +AN+I TI+GGTH+ G K++LTR +N +K +KD D +LS
Sbjct: 255 EIAMQY-NDGYAENIFSFANNIDTIEGGTHLAGFKSALTRVINDYARKFNYLKDIDKNLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT +ISV++ +P+FEGQTKT+LGN EVR +VD V + + +LE +P+V I
Sbjct: 314 GDDVREGLTAVISVKLTDPQFEGQTKTKLGNGEVRGIVDTIVGQSIGSFLEENPNVGKII 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K LSA +A AAKRAR+L R+KS+L S+SLPGKL+DCSS P EI++VEGDSAGGS
Sbjct: 374 IEKGLSASRAREAAKRARELTRRKSILESTSLPGKLSDCSSKDPSLCEIYLVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILPL+GKI+NVE++ + ++EI+ +I A G G+ G++F + +RY+
Sbjct: 434 AKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITAFGAGI-GKEFDIDKIRYN 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDADVDGAHIRTLLLTFFYRY K L +EG +Y+ PPLY++ + K+ Y Y D E
Sbjct: 493 RIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHVYIAQPPLYRIYKAKKETYVYSDPE 552
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L + +IQR+KGLGEM P QLWETT++PE R L Q+ +EDA EA+ +F+
Sbjct: 553 LDAALLELGGKDTNTNIQRYKGLGEMNPEQLWETTMDPEHRTLLQVTVEDAMEADEIFTI 612
Query: 481 LMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R++ I+ NA +VNLD
Sbjct: 613 LMGTKVEPRRDFIESNADKVVNLD 636
>gi|148378017|ref|YP_001252558.1| DNA gyrase subunit B [Clostridium botulinum A str. ATCC 3502]
gi|153931278|ref|YP_001382416.1| DNA gyrase subunit B [Clostridium botulinum A str. ATCC 19397]
gi|153936801|ref|YP_001385968.1| DNA gyrase subunit B [Clostridium botulinum A str. Hall]
gi|387816243|ref|YP_005676587.1| DNA gyrase subunit B [Clostridium botulinum H04402 065]
gi|148287501|emb|CAL81560.1| DNA gyrase subunit B [Clostridium botulinum A str. ATCC 3502]
gi|152927322|gb|ABS32822.1| DNA gyrase, B subunit [Clostridium botulinum A str. ATCC 19397]
gi|152932715|gb|ABS38214.1| DNA gyrase, B subunit [Clostridium botulinum A str. Hall]
gi|322804284|emb|CBZ01834.1| DNA gyrase subunit B [Clostridium botulinum H04402 065]
Length = 637
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/504 (48%), Positives = 351/504 (69%), Gaps = 14/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ QK+ RG T L V + GT+I F PD ++F ++F+++T+A R+RELAF
Sbjct: 144 WKQKFERGITKTGLDI----VGDTEDHGTKIYFKPDIEIFD-ELEFEYDTLAHRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN + I+L E D ++ + + GGL +V +LN +K+ LH + ++ DG +
Sbjct: 199 LNKGIKISLTDERYDKKEM----FHYEGGLRSFVLYLNRNKEKLHQQPIYVDENKDGCIV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y++ + +AN+I TI+GGTH+ G K++LTR +N +K +KD D +LS
Sbjct: 255 EIAMQY-NDGYAENIFSFANNIDTIEGGTHLAGFKSALTRVINDYARKFNYLKDTDKNLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT +ISV++ +P+FEGQTKT+LGN EVR +VD V + + +LE +P+V I
Sbjct: 314 GDDVREGLTAVISVKLTDPQFEGQTKTKLGNGEVRGIVDTIVGQSIGSFLEENPNVGKII 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K LSA +A AAKRAR+L R+KS+L S+SLPGKL+DCSS P EI++VEGDSAGGS
Sbjct: 374 IEKGLSASRAREAAKRARELTRRKSILESTSLPGKLSDCSSKDPSLCEIYLVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILPL+GKI+NVE++ + ++EI+ +I A G G+ G++F + +RY+
Sbjct: 434 AKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITAFGAGI-GKEFDIDKIRYN 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDADVDGAHIRTLLLTFFYRY K L +EG +Y+ PPLY++ + K+ Y Y D E
Sbjct: 493 RIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHVYIAQPPLYRIYKAKKEIYVYSDPE 552
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L + +IQR+KGLGEM P QLWETT++PE R L Q+ +EDA EA+ +F+
Sbjct: 553 LDAALLELGGKDTNTNIQRYKGLGEMNPEQLWETTMDPEHRTLLQVTVEDAMEADEIFTI 612
Query: 481 LMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R++ I+ NA +VNLD
Sbjct: 613 LMGTKVEPRRDFIESNADKVVNLD 636
>gi|374628575|ref|ZP_09700960.1| DNA gyrase, B subunit [Methanoplanus limicola DSM 2279]
gi|373906688|gb|EHQ34792.1| DNA gyrase, B subunit [Methanoplanus limicola DSM 2279]
Length = 639
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 246/505 (48%), Positives = 336/505 (66%), Gaps = 12/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ + RG V L+ V S GT+I F PD +F T + FD++ ++ R+RELAF
Sbjct: 142 HEMGFERGLVVNPLSSRVNASSSGPEHGTKITFMPDPLIFET-VTFDYDVLSHRMRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVD---GI 119
LN + I + E +D E + + + GGL+E+V L + K+ +H V + D +
Sbjct: 201 LNSGIRIEIADERNDFE----DVFHYEGGLKEFVNHLISGKEAIHKDVIYLHTFDEPNKV 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ S AYS+T+L + NS+ T +GGTH+EG+K++LTR +N K + +K
Sbjct: 257 EVEVALQYSS-AYSETILTFVNSVNTREGGTHLEGLKSALTRAINKTAKDNNLLKGISTP 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L GE VREGL +IS+++ P+FEGQTK RLGN V+ +VD V + LTEY E +P V+
Sbjct: 316 LRGEDVREGLNTVISIKIAEPQFEGQTKMRLGNSNVKGIVDSLVYQSLTEYFEENPKVIQ 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K+L A KA AA++AR+L R+KS L S LPGKLADCS P +SE++IVEGDSAG
Sbjct: 376 IIVQKALGAAKAREAARKARELARRKSTLESGGLPGKLADCSERDPAKSEVYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGR R FQAILPLRGKILNVE+ + KN EIQ LI A+G GV GE F E R
Sbjct: 436 GSAKQGRSRLFQAILPLRGKILNVEKASPHKILKNTEIQALISAIGCGV-GESFNVEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YH II++TDADVDGAHI TLLLTFFYRY L ++G IY+ PPLY++ +GK +Y + +
Sbjct: 495 YHHIILMTDADVDGAHICTLLLTFFYRYMPDLIEKGYIYIAQPPLYRIAKGKMEKYAFKE 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
E++ + + + SIQR+KGLGEM QLWETT+NPE R+LKQ+ + DA A+ +FS
Sbjct: 555 EEMRAAIAEYGEKGV-SIQRYKGLGEMNAEQLWETTMNPETRVLKQVDVMDATYADEIFS 613
Query: 480 SLMGARVDTRKE-LIQNAANLVNLD 503
LMG VD R+E +I++A + NLD
Sbjct: 614 KLMGDDVDARREFIIRHAKEVTNLD 638
>gi|406838853|ref|ZP_11098447.1| DNA gyrase subunit B [Lactobacillus vini DSM 20605]
Length = 650
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 239/503 (47%), Positives = 329/503 (65%), Gaps = 8/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y + RGK ++ + GT + F PD +FT +D N + RIRELAF
Sbjct: 153 YAMDFKRGK--VNHEMQIIGDCGEHEHGTIVHFLPDPDIFTETTTYDINILTTRIRELAF 210
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I ++ D EK ++ + GG+ YV++LN +K+ L + V + +GIT+
Sbjct: 211 LNKGLRITIK--DLRSEKPTLQQFHYEGGIRHYVEFLNKNKEALFPEPVYVEGEQNGITV 268
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+++LQ+ +D +S+ +L +AN+I T +GGTH G K +LTR +N KK+K +KD D +LS
Sbjct: 269 EVSLQYTNDFHSN-LLTFANNIHTYEGGTHEAGFKTALTRVINDYAKKNKLLKDSDDNLS 327
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG+T ++S++ P+P+FEGQTKT+LGN + R V D E+ ++++ +P V I
Sbjct: 328 GEDVREGMTAVVSIKHPDPQFEGQTKTKLGNSDARTVTDHLFSEHFSKFMLENPAVARKI 387
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+K+ L S+LPGKLAD +S P SE+FIVEGDSAGGS
Sbjct: 388 VDKGILASKARVAAKRAREVTRKKNGLEISNLPGKLADNTSKDPSISELFIVEGDSAGGS 447
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R QAILP+RGKILNVE+ + NEEI++L ALG G GEDF + YH
Sbjct: 448 AKQGRSRLTQAILPIRGKILNVEKATLDRILANEEIRSLFTALGTGF-GEDFDIDKANYH 506
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLT FYR+ + + D G +Y+ PPLY+V +GK ++Y D E
Sbjct: 507 KLIIMTDADVDGAHIRTLLLTLFYRFMRPMIDHGYVYIAQPPLYQVRQGKMIKYIDTDEE 566
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L +V IQR+KGLGEM QLWETT++PE R L Q+ + DA EAN VF L
Sbjct: 567 LDEVVGQLSPAPKPVIQRYKGLGEMDAEQLWETTMDPENRRLLQVELSDAEEANEVFEML 626
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R+E I+ A V NLD
Sbjct: 627 MGDKVEPRREFIEKNATFVENLD 649
>gi|315644305|ref|ZP_07897475.1| DNA gyrase, B subunit [Paenibacillus vortex V453]
gi|315280680|gb|EFU43969.1| DNA gyrase, B subunit [Paenibacillus vortex V453]
Length = 634
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 247/504 (49%), Positives = 337/504 (66%), Gaps = 14/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG P + + D GT + F PD ++FT +++ T+ RIRELAF
Sbjct: 141 YQQEYHRGVPQYDIKV----IGDSDEHGTTVTFLPDPEIFTETTVYEYTTLLTRIRELAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
LN + + L E + +++F + GG+ EYV++LN K+ LH D + D I
Sbjct: 197 LNKGIALTLTDE-----RTGASDFFKYEGGIIEYVKFLNEKKEALHEDPIYVEGSRDNIQ 251
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
++++LQ+ +D+Y++ + +AN+I T +GGTH G K++LTR +N +K+ +KD + +L
Sbjct: 252 VEVSLQY-NDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYARKTGMIKDNNNNL 310
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ VREGLT IISV+VP P+FEGQTKT+LGN EVR +V+ E L E+L+ +P V
Sbjct: 311 SGDDVREGLTAIISVKVPEPQFEGQTKTKLGNSEVRGIVESLFAEKLQEFLQENPSVSRR 370
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
IL K+L A +A AA++AR++ R+KS L S+LPGKLADCSS SE++IVEGDSAGG
Sbjct: 371 ILEKALQASRAREAARKAREMTRRKSALEVSALPGKLADCSSKDASISELYIVEGDSAGG 430
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR FQAILPLRGKILNVE+ + N EI+ +I ALG G+ EDF RY
Sbjct: 431 SAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIITALGTGI-AEDFDLSKARY 489
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIII+TDADVDGAHIRTLLLTFFYRY + L + G IY+ PPL+KVER K ++Y +
Sbjct: 490 HKIIIMTDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPPLFKVERNKVIRYAGSEK 549
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
E ++ F N ++QR+KGLGEM QLWETT++PE R + Q+ IEDA A+ +F +
Sbjct: 550 ERDEIIKEFGENVKINVQRYKGLGEMNAGQLWETTMDPESRTMLQVTIEDAILADTLFDT 609
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG V+ R++ IQ A V NLD
Sbjct: 610 LMGDNVEPRRDFIQEHAKTVRNLD 633
>gi|302380141|ref|ZP_07268614.1| DNA gyrase, B subunit [Finegoldia magna ACS-171-V-Col3]
gi|302312083|gb|EFK94091.1| DNA gyrase, B subunit [Finegoldia magna ACS-171-V-Col3]
Length = 638
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/507 (47%), Positives = 348/507 (68%), Gaps = 17/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++ +GK VT LT V GT I F PD +F T + FD N +A R RE+AF
Sbjct: 142 YEQRFEKGKTVTGLTVVKENVRG---TGTTIEFMPDDTIFET-LNFDRNVLAKRFREMAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGIT 120
LN + I E++ Y E F + GG++ +V+++N KKPL H+V+ + D
Sbjct: 198 LNKGVKIEFA-----DERDGYKELFHYEGGIKSFVEYINKSKKPLDHEVMYIEGEKDTTK 252
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q+ +++Y++T++ + N+I+T+DGGTH+ G K++LTR LN + +K+KD +L
Sbjct: 253 VEIAMQY-TESYNETIVSFTNNIKTVDGGTHVVGFKSALTRALNDYARNKSILKEKDDNL 311
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ VREG+T ++SV++ NP+FEGQTK +LGN E R VVD V E+L+ Y E +P ++ +
Sbjct: 312 SGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTVVDSVVYEHLSFYFEENPKIVRT 371
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K+L++ KA LAA+RARDLVR+KSVL +++LPGKLADC S+ E +EIF+VEGDSAGG
Sbjct: 372 IIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLADCQSSDIEYNEIFLVEGDSAGG 431
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GRD +FQAILPLRGKILNVE+ + +EEI+ +I A G G+ G++F LRY
Sbjct: 432 SAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSEEIKAMITAFGTGI-GKNFDISKLRY 490
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG-KQVQYCYDD 419
KI+I+TDADVDGAHIRTLLLTF YR+ K L ++G +Y+ PPLY + +G K ++YCY +
Sbjct: 491 GKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYIAQPPLYGIIKGVKVMEYCYTE 550
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI--EDAAEANVV 477
EL++ + + +QR+KGLGEM QLW+TT+NPE R+L ++ I ED E +
Sbjct: 551 QELEEALEKYGERSNIKVQRYKGLGEMNAEQLWDTTMNPEHRILIKVEIDGEDENELDNT 610
Query: 478 FSSLMGARVDTRKELI-QNAANLVNLD 503
F LMG V+ R+E I QNA N+D
Sbjct: 611 FDVLMGDNVEPRREFIEQNAVYAQNID 637
>gi|172056050|ref|YP_001812510.1| DNA gyrase subunit B [Exiguobacterium sibiricum 255-15]
gi|171988571|gb|ACB59493.1| DNA gyrase, B subunit [Exiguobacterium sibiricum 255-15]
Length = 643
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 238/503 (47%), Positives = 338/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q Y RG P L + + + GT IRF+PD ++F +++D++ +A R+RELAF
Sbjct: 148 YYQAYHRGVPAADLEI----IGTSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN LTI + + +D + + + GG++ YV+ LN K+ +H+ V + DGI +
Sbjct: 204 LNKGLTIEITDDRADEPITR--SFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGIEV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D ++ + + N+I T +GGTH G K +LTR +N KK +K+ D +LS
Sbjct: 262 EVALQY-NDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGTLS 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG+T I+S++ PNP+FEGQTKT+LGN + R D +++ +P +I
Sbjct: 321 GEDVREGMTAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSARAI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAKRAR+L R+K VL SSLPGKLADCSS SEI+IVEGDSAGGS
Sbjct: 381 VEKGMMASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILP+RGKILNVE+ + N EI+ +I ALG + G +F E RYH
Sbjct: 441 AKSGRDRHFQAILPIRGKILNVEKARLDKILGNNEIRTIITALGTSI-GSEFNIEKARYH 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLY +++GK + Y +++ E
Sbjct: 500 KVIIMTDADVDGAHIRTLLLTFFYRYMRPLVEHGYVYIAQPPLYGIKQGKNITYVHNERE 559
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + ++ P NA Y IQR+KGLGEM P QLWETT++P R + ++ ++DA EA+ VF L
Sbjct: 560 LNEALAALPENARYDIQRYKGLGEMDPEQLWETTMDPSGRQMLRVELQDAIEADEVFDIL 619
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R++ IQ+ A+ V NLD
Sbjct: 620 MGDQVEPRRDFIQSHAHYVKNLD 642
>gi|373464810|ref|ZP_09556325.1| DNA gyrase, B subunit [Lactobacillus kisonensis F0435]
gi|371761865|gb|EHO50446.1| DNA gyrase, B subunit [Lactobacillus kisonensis F0435]
Length = 647
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 238/503 (47%), Positives = 333/503 (66%), Gaps = 8/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ ++RG T + V+ S D GT++ F PD +F +D + R+RELAF
Sbjct: 150 YYMDFTRGHVKTKM--KVVKEVSDDLHGTKVHFLPDPDIFRETTTYDIKVLTARLRELAF 207
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
LN L I +R D PEK ++ + GG++ YV++L+ K+ L D + + V +GIT+
Sbjct: 208 LNKGLRIVIR--DLRPEKPTEKDFMYEGGIKHYVEYLDKSKETLLDEPIYVEGVMNGITV 265
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y +T++ + N+I T +GGTH EG K +LTR +N +K+K +KD + +LS
Sbjct: 266 EVAIQYTND-YHNTLMTFTNNIHTYEGGTHEEGFKRALTRVINDYARKNKLLKDNEANLS 324
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG T ++S++ P+P+FEGQTKT+LGN + R V D+ ++ ++L +P + I
Sbjct: 325 GEDVREGTTAVVSIKHPDPQFEGQTKTKLGNSDARTVTDRIFSDHFAKFLMENPKMARKI 384
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ + L A KA AAKRAR++ R+KS L S+LPGKLAD +S P SE+FIVEGDSAGGS
Sbjct: 385 VDRGLLASKARSAAKRAREVTRKKSGLEISNLPGKLADNTSKDPRISELFIVEGDSAGGS 444
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R QAILP+RGKILNVE+ + NEEI++L A+G G GEDF + YH
Sbjct: 445 AKQGRSRLTQAILPIRGKILNVEKASMDRILANEEIRSLFTAMGTGF-GEDFDLSKINYH 503
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHI+TLLLT YRY + L D G +YV PPLY+V +GK +Y D +
Sbjct: 504 KLIIMTDADVDGAHIQTLLLTLIYRYMRPLIDAGYVYVAQPPLYQVRQGKMSRYIDSDED 563
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + + + IQR+KGLGEM QLW+TT+NPE R L ++ DAAEAN VFS L
Sbjct: 564 LSQFLGTLQPSPKPVIQRYKGLGEMDAEQLWDTTMNPENRHLLRVESSDAAEANKVFSML 623
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R+E I++ A V NLD
Sbjct: 624 MGDKVEPRREFIEDNATFVENLD 646
>gi|210614352|ref|ZP_03290171.1| hypothetical protein CLONEX_02385 [Clostridium nexile DSM 1787]
gi|210150696|gb|EEA81705.1| hypothetical protein CLONEX_02385 [Clostridium nexile DSM 1787]
Length = 638
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 247/510 (48%), Positives = 337/510 (66%), Gaps = 16/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQ--GTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
Y Q+Y RGK V L +D D Q GT++ F PDK++F + FD++T+ R RE+
Sbjct: 140 YKQRYERGKVVYKLKV----IDECDAQKTGTKVTFLPDKEIFEETV-FDYDTLKQRFREM 194
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
AFL L I L+ D PE+ + + GG++E+VQ+LN K PL++ ++ + DG+
Sbjct: 195 AFLTKNLKIVLK--DERPEEPIEKTFHYEGGIKEFVQYLNKSKTPLYEQIIYCEGEKDGV 252
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+Q +D+YSD G+ N+I T +GGTH+ G + +LT+T N +K+K +KD + +
Sbjct: 253 AVEVAMQH-NDSYSDNTYGFVNNITTPEGGTHVVGFRNALTKTFNEYARKNKLLKDNEPN 311
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSGE +REGLT IISV++ +P+FEGQTK +LGN E R VD V L +LE +P+V
Sbjct: 312 LSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDNIVSTQLEIFLEQNPNVAK 371
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+ KS+ A +A AA++ARDL R+KS L SLPGKLADCS P EI+IVEGDSAG
Sbjct: 372 MTVEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSDKDPANCEIYIVEGDSAG 431
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK RDR QAILPLRGKILNVE+ +Y N EI+ +I A G G+ EDF LR
Sbjct: 432 GSAKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGIH-EDFDISKLR 490
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHKIII+TDADVDGAHI TLLLTF YR+ L EG +Y+ PPLYK+E+ K+V Y Y D
Sbjct: 491 YHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKEGYVYLAQPPLYKLEKNKKVWYAYSD 550
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI--EDAAEANVV 477
EL K+ + IQR+KGLGEM QLWETT++PE R+L ++ + E +E ++
Sbjct: 551 EELNKILLEVGRDGNNKIQRYKGLGEMDAEQLWETTMDPEHRILLRVTMDEESTSELDLT 610
Query: 478 FSSLMGARVDTRKELIQNAANLVNLDHLDI 507
F++LMG +V+ R+E I+ A VN +LDI
Sbjct: 611 FTTLMGDKVEPRREFIEENAKYVN--NLDI 638
>gi|284047394|ref|YP_003397733.1| DNA gyrase subunit B [Acidaminococcus fermentans DSM 20731]
gi|283951615|gb|ADB46418.1| DNA gyrase, B subunit [Acidaminococcus fermentans DSM 20731]
Length = 646
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 248/507 (48%), Positives = 343/507 (67%), Gaps = 19/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y ++S+GK TT +V ++ GT + FWPD +FT + + ++T+ RIRELAF
Sbjct: 152 YGIEFSKGK--TTRPLYVKGECPENETGTSVTFWPDDTIFTETV-YSYDTLKHRIRELAF 208
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I L +D Q + + GG+ +V+++N K+PLH V G R+D
Sbjct: 209 LNKGVKIQL----TDERSGQDEVFHYEGGIVSFVEFVNKGKEPLHAKPIYVEGERQDT-- 262
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+++A+Q+ +DAY++ + + N+I T +GGTH+ G+K +LTR +N +K+ +KD +
Sbjct: 263 -IVEVAMQY-TDAYTENIYTFVNNINTEEGGTHLAGLKQALTRCINDYARKNSLLKDNED 320
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSG+ VREGLTC++S++V P+FEGQTKT+LGN EVR +VD V E LTEY E + V
Sbjct: 321 NLSGDDVREGLTCVMSLKVREPQFEGQTKTKLGNSEVRGIVDNMVTEALTEYFEENAPVA 380
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K++ A +A AA++ARDL R+KS L SSLPGKLADCSS E+EI++VEGDSA
Sbjct: 381 KKIVEKAIMASRARSAARKARDLTRRKSALEVSSLPGKLADCSSKNAAETEIYLVEGDSA 440
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILPLRGKILNVE+ M ++EI+ +I A G G+ G++F
Sbjct: 441 GGSAKQGRDRNFQAILPLRGKILNVEKARLDKMLNSQEIRAMITAFGCGI-GDEFDIAKA 499
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RY KIII+TDADVDGAHIRTLLLTFFYRY K L G +++ PPLY + GK+ Y Y
Sbjct: 500 RYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLIQNGNVFIAQPPLYLIRTGKKHTYAYS 559
Query: 419 DAEL-KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
D EL +K+ N Y +QR+KGLGEM P QLWETT++P +R + Q+ +EDAA A+ V
Sbjct: 560 DEELQRKLDEVGRQNNPY-VQRYKGLGEMNPEQLWETTMDPSKRTVLQVQLEDAATADSV 618
Query: 478 FSSLMGARVDTRKELI-QNAANLVNLD 503
FS LMG +V+ R++ I +NA + NLD
Sbjct: 619 FSVLMGDKVEPRRQFIEENAGKVTNLD 645
>gi|417925090|ref|ZP_12568517.1| DNA gyrase, B subunit [Finegoldia magna SY403409CC001050417]
gi|341592387|gb|EGS35273.1| DNA gyrase, B subunit [Finegoldia magna SY403409CC001050417]
Length = 638
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/507 (47%), Positives = 348/507 (68%), Gaps = 17/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++ +GK VT LT V GT I F PD +F T + FD N +A R RE+AF
Sbjct: 142 YEQRFEKGKTVTGLTVVKENVRG---TGTTIEFLPDDTIFET-LNFDRNVLAKRFREMAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGIT 120
LN + I E++ Y E F + GG++ +V+++N KKPL H+V+ + D
Sbjct: 198 LNKGVKIEFA-----DERDGYKELFHYEGGIKSFVEYINKSKKPLDHEVMYIEGEKDTTK 252
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q+ +++Y++T++ + N+I+T+DGGTH+ G K++LTR LN + +K+KD +L
Sbjct: 253 VEIAMQY-TESYNETIVSFTNNIKTVDGGTHVVGFKSALTRALNDYARNKNILKEKDDNL 311
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ VREG+T ++SV++ NP+FEGQTK +LGN E R VVD V E+L+ Y E +P ++ +
Sbjct: 312 SGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTVVDSVVYEHLSFYFEENPKIVRT 371
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K+L++ KA LAA+RARDLVR+KSVL +++LPGKLADC S+ E +EIF+VEGDSAGG
Sbjct: 372 IIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLADCQSSDIEYNEIFLVEGDSAGG 431
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GRD +FQAILPLRGKILNVE+ + +EEI+ +I A G G+ G++F LRY
Sbjct: 432 SAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSEEIKAMITAFGTGI-GKNFDISKLRY 490
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG-KQVQYCYDD 419
KI+I+TDADVDGAHIRTLLLTF YR+ K L ++G +Y+ PPLY + +G K ++YCY +
Sbjct: 491 GKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYIAQPPLYGIIKGVKVMEYCYTE 550
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI--EDAAEANVV 477
EL++ + + +QR+KGLGEM QLW+TT+NPE R+L ++ I ED E +
Sbjct: 551 QELEEALEKYGERSNIKVQRYKGLGEMNAEQLWDTTMNPEHRILIKVEIDGEDENELDNT 610
Query: 478 FSSLMGARVDTRKELI-QNAANLVNLD 503
F LMG V+ R+E I QNA N+D
Sbjct: 611 FDVLMGDNVEPRREFIEQNAVYAQNID 637
>gi|153809174|ref|ZP_01961842.1| hypothetical protein BACCAC_03484 [Bacteroides caccae ATCC 43185]
gi|423220418|ref|ZP_17206913.1| DNA gyrase, B subunit [Bacteroides caccae CL03T12C61]
gi|149128150|gb|EDM19370.1| DNA gyrase, B subunit [Bacteroides caccae ATCC 43185]
gi|392623495|gb|EIY17598.1| DNA gyrase, B subunit [Bacteroides caccae CL03T12C61]
Length = 652
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 235/511 (45%), Positives = 342/511 (66%), Gaps = 17/511 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y GKP+ + V V + D GTR +FWPD +FT + +D+ +A R+RELA+
Sbjct: 148 YQQEYEIGKPLYS----VKEVGTADITGTRQQFWPDDTIFTETV-YDYKILASRLRELAY 202
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I L R+ ++ + +++ GL E+V+++ + ++ L +DV+ + GI
Sbjct: 203 LNAGLRITLTDRRVVNEDGSFKSEQFYSEEGLREFVRFIESSREHLINDVIYLNSEKQGI 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I++A+ + + +S+ + Y N+I TI+GGTH+ G + +LTRTL + SK ++ +
Sbjct: 263 PIEVAIMYNT-GFSENVHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDSKMLEKVKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT +ISV+V P+FEGQTKT+LGN EV VDQ+V E L+ YLE HP
Sbjct: 322 ISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEVLSYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A A AA++AR++V++KS + LPGKLADCS P + E+F+VEGDSAG
Sbjct: 382 TIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDPSKCELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA-- 357
G+AKQGR+R FQAILPLRGKILNVE+ +++EI+N+ ALG+ + ED KEA
Sbjct: 442 GTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYTALGVTIGTEDDSKEANI 501
Query: 358 --LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
LRYHKIII+TDADVDG+HI TL++TFF+RY + G +Y+ PPLY ++GK +Y
Sbjct: 502 EKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLYIATPPLYLCKKGKVEEY 561
Query: 416 CYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
C+ DA+ +K ++ NA+++ QR+KGLGEM QLWETT++PE RMLKQ+ I++AA
Sbjct: 562 CWTDAQRQKFIDTYGGGSENAIHT-QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAA 620
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ +FS LMG V R+E I+ A N+D
Sbjct: 621 EADYIFSMLMGEDVGPRREFIEENATYANID 651
>gi|427392992|ref|ZP_18886895.1| DNA gyrase subunit B [Alloiococcus otitis ATCC 51267]
gi|425730923|gb|EKU93753.1| DNA gyrase subunit B [Alloiococcus otitis ATCC 51267]
Length = 649
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 238/503 (47%), Positives = 332/503 (66%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y RG + L V D GT + F D +F +D +T+A RIRELAF
Sbjct: 154 YQQVYKRGLVDSDLEV----VGETDHTGTIVTFKADSLIFKDTTSYDFDTLATRIRELAF 209
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITI 121
LN L I++ ED Q Y F GG+ YV LN+ ++ L++ F + +GI++
Sbjct: 210 LNRGLNISI--EDKRQADGQSLNYHFEGGISSYVDHLNSKREVLYETPIFLEGEEEGISV 267
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ +D++ ++ +AN+I T +GG HI G K +LTR +N +K+ +++ + + +
Sbjct: 268 EIALQH-TDSFHTNLMSFANNIHTYEGGMHISGFKTALTRAVNDYARKNNLLRESEDNFT 326
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT ++S++ P+P+FEGQTKT+LGN EVR ++D+ ++ YL +P V I
Sbjct: 327 GDDVREGLTVVLSIKHPDPQFEGQTKTKLGNSEVRGIIDRLFSQHFERYLMENPKVGKRI 386
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A KA AAKRAR++ R+KS L S+LPGKLADCSS PEESE+FIVEGDSAGGS
Sbjct: 387 VDKALLASKARQAAKRAREVTRKKSGLEISNLPGKLADCSSKDPEESELFIVEGDSAGGS 446
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R FQAILP+RGKILNVE+ + NEEI++L A+G G GE+F E RY+
Sbjct: 447 AKQGRSRIFQAILPIRGKILNVEKASIDRILANEEIRSLFTAMGTGF-GEEFNVEEARYN 505
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTL+LT YRY + L + G +Y+ PPLY+V++GK+V+Y D E
Sbjct: 506 KLIIMTDADVDGAHIRTLVLTLLYRYMRPLIEAGFVYIAQPPLYQVKQGKKVKYLDSDRE 565
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L P + S+QR+KGLGEM QLWETT+NPE R L ++ ++DA EA+ +F L
Sbjct: 566 LDSYLKEIPDSPKPSVQRYKGLGEMDAEQLWETTMNPEHRRLLRVDVDDAIEADTIFDML 625
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG V R++ I +NA + N+D
Sbjct: 626 MGEDVKPRRDFIKENARYVENID 648
>gi|303234457|ref|ZP_07321095.1| DNA gyrase, B subunit [Finegoldia magna BVS033A4]
gi|302494412|gb|EFL54180.1| DNA gyrase, B subunit [Finegoldia magna BVS033A4]
Length = 638
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/507 (47%), Positives = 348/507 (68%), Gaps = 17/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++ +GK VT LT V GT I F PD +F T + FD N +A R RE+AF
Sbjct: 142 YEQRFEKGKTVTGLTVVKENVRG---TGTTIEFMPDDTIFET-LNFDRNVLAKRFREMAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGIT 120
LN + I E++ Y E F + GG++ +V+++N KKPL H+V+ + D
Sbjct: 198 LNKGVKIEFA-----DERDGYKELFHYEGGIKSFVEYINKSKKPLDHEVMYIEGEKDTTK 252
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q+ +++Y++T++ + N+I+T+DGGTH+ G K++LTR LN + +K+KD +L
Sbjct: 253 VEIAMQY-TESYNETIVSFTNNIKTVDGGTHVVGFKSALTRALNDYARNKNILKEKDDNL 311
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ VREG+T ++SV++ NP+FEGQTK +LGN E R VVD V E+L+ Y E +P ++ +
Sbjct: 312 SGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTVVDSVVYEHLSFYFEENPKIVRT 371
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K+L++ KA LAA+RARDLVR+KSVL +++LPGKLADC S+ E +EIF+VEGDSAGG
Sbjct: 372 IIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLADCQSSDIEYNEIFLVEGDSAGG 431
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GRD +FQAILPLRGKILNVE+ + +EEI+ +I A G G+ G++F LRY
Sbjct: 432 SAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSEEIKAMITAFGTGI-GKNFDISKLRY 490
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG-KQVQYCYDD 419
KI+I+TDADVDGAHIRTLLLTF YR+ K L ++G +Y+ PPLY + +G K ++YCY +
Sbjct: 491 GKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYIAQPPLYGIIKGVKVMEYCYTE 550
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI--EDAAEANVV 477
EL++ + + +QR+KGLGEM QLW+TT+NPE R+L ++ I ED E +
Sbjct: 551 QELEEALEKYGERSNIKVQRYKGLGEMNAEQLWDTTMNPEHRVLIKVEIDGEDENELDNT 610
Query: 478 FSSLMGARVDTRKELI-QNAANLVNLD 503
F LMG V+ R+E I QNA N+D
Sbjct: 611 FDVLMGDNVEPRREFIEQNAVYAQNID 637
>gi|402835705|ref|ZP_10884268.1| DNA gyrase, B subunit [Mogibacterium sp. CM50]
gi|402273987|gb|EJU23177.1| DNA gyrase, B subunit [Mogibacterium sp. CM50]
Length = 612
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/506 (48%), Positives = 346/506 (68%), Gaps = 15/506 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK VT L + + G++ FWPD ++F + F+++ + R+RE+AF
Sbjct: 116 YRQEYKRGKTVTKLEV----IGTSKDTGSKTTFWPDPEIFDGTV-FEYDILQRRMREMAF 170
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN L I++ ED K + + + GG+ E+VQ+LN +K +++ + F + DG +
Sbjct: 171 LNKGLRISI--EDKREGKEKRESFHYEGGIIEFVQYLNKNKGVVNNKIFYFEYEKDGYEV 228
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D YS+ L YAN+I TI+GG H+ G +A+LTRT+N ++SK +K+ D SL
Sbjct: 229 EVAMQY-TDRYSELTLSYANNINTIEGGFHLMGFRAALTRTVNDYARRSKILKENDDSLQ 287
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT I+SV++ NP+FEGQTK +LGN EVR V+ ++ E L+ YL+ +P I
Sbjct: 288 GEDVREGLTAIVSVKLTNPQFEGQTKAKLGNSEVRGFVESNMNENLSFYLDENPKEAKLI 347
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K L A +A AA++AR++ R+ SVL ++SLPGKLADCS P SEIF+VEGDSAGGS
Sbjct: 348 LDKCLKAARAREAARKAREITRKTSVLETTSLPGKLADCSEKDPALSEIFLVEGDSAGGS 407
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR+ QA+LPLRGKI+NVE+ + ++EI+N+I A G GV G +F + LRYH
Sbjct: 408 AKSGRDRKRQAVLPLRGKIINVEKARADRILNSDEIKNMITAFGCGV-GSNFDIDKLRYH 466
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYR+ L ++G +Y PPL++V++GK++ Y Y DAE
Sbjct: 467 KIIIMTDADVDGAHIRTLLLTFFYRFMTPLIEKGYVYAAQPPLFRVKQGKEIHYTYSDAE 526
Query: 422 ----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
L ++K+ S + IQR+KGLGEM QLWETT++ R L Q+ IEDA A+ +
Sbjct: 527 QDKLLAELKAHNKSTKI-EIQRYKGLGEMDFNQLWETTMDYNHRTLVQIKIEDATAADEI 585
Query: 478 FSSLMGARVDTRKELIQNAANLVNLD 503
F++LMG +V RK+ I++ A LD
Sbjct: 586 FTTLMGDKVPPRKKFIEDNARYATLD 611
>gi|422879137|ref|ZP_16925603.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK1059]
gi|422928983|ref|ZP_16961925.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis ATCC 29667]
gi|422931953|ref|ZP_16964884.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK340]
gi|332366316|gb|EGJ44068.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK1059]
gi|339615669|gb|EGQ20340.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis ATCC 29667]
gi|339619386|gb|EGQ23967.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK340]
Length = 649
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/508 (46%), Positives = 339/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 149 HYQEYRRGHVVADLEI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 205 LNRGLRISITDKRDGME--QVKDYHYEGGIASYVQYINENKDVIFETPIYTDGEMDDITV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 263 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 322 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVARKI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P+E+E+FIVEGDSAGGS
Sbjct: 382 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPQETELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 442 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V +Y A
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGLVYIAQPPIYGVKVGSEVKEYIQPGA 560
Query: 421 ----ELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+ + + + +IQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 561 NQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 620
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 621 KIFDMLMGDRVEPRREFIEENAVYSTLD 648
>gi|365925619|ref|ZP_09448382.1| DNA gyrase subunit B [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 649
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/480 (48%), Positives = 324/480 (67%), Gaps = 7/480 (1%)
Query: 29 QGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF 88
GT++ F PD +F +D + RIRELAFLN L I + D E + E+ +
Sbjct: 176 HGTKVHFLPDPDIFVETTVYDSKILTTRIRELAFLNKGLKITIT--DKRVESPKTKEFHY 233
Query: 89 AGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTID 147
GG++ YV++LN K L + + + GIT+++ALQ+ D +S+ M +AN+I T +
Sbjct: 234 VGGIKHYVEFLNKGKNVLFEEPIYVEGEQKGITVEVALQYTDDFHSNLMT-FANNIHTYE 292
Query: 148 GGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTK 207
GGTH G K +LTR +N +KS +K+ + +LSGE VREGLT ++S++ P+P+FEGQTK
Sbjct: 293 GGTHEAGFKTALTRVINDYARKSGRMKENEDNLSGEDVREGLTAVVSIKHPDPQFEGQTK 352
Query: 208 TRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSV 267
T+LGN + R V D+ E+ ++++ +P + ++ K L A KA +AAKRAR++ R+K+
Sbjct: 353 TKLGNSDARTVTDRMFAEHFSKFMMENPAIARRVVDKGLLASKARIAAKRAREVTRKKNG 412
Query: 268 LRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKD 327
L S+LPGKLAD +S PE SE+FIVEGDSAGGSAKQGR R QAILP+RGKILNVE+
Sbjct: 413 LEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKAT 472
Query: 328 EAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRY 387
+ NEEI++L ALG G G++F E YHK+II+TDADVDGAHIRTLLLT FYR+
Sbjct: 473 LDRILANEEIRSLFTALGTGF-GQEFNVEKANYHKLIIMTDADVDGAHIRTLLLTLFYRF 531
Query: 388 QKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMM 447
+ + D+G +Y+ PPLY+V +GK ++Y DAEL +V P + IQR+KGLGEM
Sbjct: 532 MRPMIDKGFVYIAQPPLYQVRQGKLIRYIDTDAELDEVLGQLPPSPKPVIQRYKGLGEMD 591
Query: 448 PVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
QLWETT+NPE R L ++ +EDA EAN VF LMG +V+ R+E I+ AN +D+LD+
Sbjct: 592 AEQLWETTMNPENRRLLRVKLEDAEEANGVFEMLMGDKVEPRREFIE--ANATFVDNLDV 649
>gi|125717721|ref|YP_001034854.1| DNA gyrase subunit B [Streptococcus sanguinis SK36]
gi|323351846|ref|ZP_08087497.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis VMC66]
gi|422821500|ref|ZP_16869693.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK353]
gi|422823861|ref|ZP_16872049.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK405]
gi|422826073|ref|ZP_16874252.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK678]
gi|422848944|ref|ZP_16895620.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK115]
gi|422851900|ref|ZP_16898570.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK150]
gi|422855797|ref|ZP_16902455.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK1]
gi|422862883|ref|ZP_16909515.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK408]
gi|422884455|ref|ZP_16930904.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK49]
gi|125497638|gb|ABN44304.1| DNA gyrase, putative [Streptococcus sanguinis SK36]
gi|322121903|gb|EFX93635.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis VMC66]
gi|324990928|gb|EGC22863.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK353]
gi|324993188|gb|EGC25108.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK405]
gi|324995509|gb|EGC27421.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK678]
gi|325689965|gb|EGD31969.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK115]
gi|325694221|gb|EGD36137.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK150]
gi|327461458|gb|EGF07789.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK1]
gi|327473763|gb|EGF19181.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK408]
gi|332359588|gb|EGJ37406.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK49]
Length = 649
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/508 (46%), Positives = 339/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 149 HYQEYRRGHVVADLEI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 205 LNRGLRISITDKRDGME--QVKDYHYEGGIASYVQYINENKDVIFETPIYTDGEMDDITV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 263 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 322 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVARKI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P+E+E+FIVEGDSAGGS
Sbjct: 382 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPQETELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 442 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V +Y A
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVYIAQPPIYGVKVGSEVKEYIQPGA 560
Query: 421 ----ELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+ + + + +IQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 561 NQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 620
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 621 KIFDMLMGDRVEPRREFIEENAVYSTLD 648
>gi|21675071|ref|NP_663136.1| DNA gyrase subunit B [Chlorobium tepidum TLS]
gi|21648310|gb|AAM73478.1| DNA gyrase subunit B [Chlorobium tepidum TLS]
Length = 647
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/503 (46%), Positives = 341/503 (67%), Gaps = 16/503 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG P V + + D++GT++ F PD ++F +F + I R+RELAF
Sbjct: 151 FRQTYRRGVP----QGGVEEIGTTDQRGTKVTFKPDPEIFKIT-EFRKDIILDRMRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK-KPLHDVVGFRKDVDGITI 121
LN L I ++ D E N+ + + GGL+E+V+++++++ L + + + D +
Sbjct: 206 LNSNLRIIVQ----DAEGNE-EIFHYEGGLKEFVRFIDSNRLSLLKEPIFLSGERDSTMV 260
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y + + Y N+I T +GGTH+ G + +LTRTLN+ +K+ +K+ I+L+
Sbjct: 261 EIALQY-NDSYQENIFSYVNNINTHEGGTHVTGFRKALTRTLNAYAQKNDLLKNVKITLT 319
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +EGLT +ISV+VP P+FEGQTKT+LGN E + +V+ V E L E+ E +P L I
Sbjct: 320 GDDFKEGLTAVISVKVPEPQFEGQTKTKLGNSETQSIVETIVNEQLAEFAESNPGTLKLI 379
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K SA + AA++A++L R+KSVL SS LPGKLADCS P+ E++IVEGDSAGGS
Sbjct: 380 IEKVKSAAISREAARKAKELTRRKSVLESSGLPGKLADCSINDPDHCELYIVEGDSAGGS 439
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPL+GKILNVE+ M +NEEI+ +I ALG + E+F E LRY
Sbjct: 440 AKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILALGTSIGEEEFSPEKLRYG 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFF+RY ++L + G +++ PPLY V+ G++ QY +D+ E
Sbjct: 500 KIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVFIAQPPLYLVKSGREQQYAWDEDE 559
Query: 422 ----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++++K A SIQR+KGLGEM P QLW TT++P R L Q+ +E+A EA+ V
Sbjct: 560 RLSIVEQMKKLQKGKANVSIQRYKGLGEMNPEQLWSTTMDPAHRSLLQVTVENAMEADQV 619
Query: 478 FSSLMGARVDTRKELIQNAANLV 500
FS+LMG +V+ R++ I+ A V
Sbjct: 620 FSTLMGDKVEPRRDFIEKNARYV 642
>gi|168181121|ref|ZP_02615785.1| DNA gyrase, B subunit [Clostridium botulinum NCTC 2916]
gi|226947228|ref|YP_002802319.1| DNA gyrase subunit B [Clostridium botulinum A2 str. Kyoto]
gi|182668169|gb|EDT80148.1| DNA gyrase, B subunit [Clostridium botulinum NCTC 2916]
gi|226844613|gb|ACO87279.1| DNA gyrase, B subunit [Clostridium botulinum A2 str. Kyoto]
Length = 637
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 243/504 (48%), Positives = 351/504 (69%), Gaps = 14/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ QK+ RG T L V + GT+I F PD ++F ++F+++T+A R+RELAF
Sbjct: 144 WKQKFERGITKTGLDI----VGDTEDHGTKIYFKPDIEIFD-ELEFEYDTLAHRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN + I+L E D ++ + + GGL +V +LN +K+ LH + ++ DG +
Sbjct: 199 LNKGIKISLTDERYDKKEM----FHYEGGLRSFVLYLNRNKEKLHQQPIYVDENKDGCIV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y++ + +AN+I TI+GGTH+ G K++LTR +N +K +KD D +LS
Sbjct: 255 EIAMQY-NDGYAENIFSFANNIDTIEGGTHLAGFKSALTRVINDYARKFNYLKDIDKNLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT +ISV++ +P+FEGQTKT+LGN EVR +VD V + + +LE +P+V I
Sbjct: 314 GDDVREGLTAVISVKLTDPQFEGQTKTKLGNGEVRGIVDTIVGQSIGSFLEENPNVGKII 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K LSA +A AAKRAR+L R+KS+L S+SLPGKL+DCSS P EI++VEGDSAGGS
Sbjct: 374 IEKGLSASRAREAAKRARELTRRKSILESTSLPGKLSDCSSKDPSLCEIYLVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILPL+GKI+NVE++ + ++EI+ +I A G G+ G++F + +RY+
Sbjct: 434 AKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITAFGAGI-GKEFDIDKIRYN 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDADVDGAHIRTLLLTFFYRY K L +EG +Y+ PPLY++ + K+ Y Y D E
Sbjct: 493 RIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHVYIAQPPLYRIYKAKKEIYVYSDPE 552
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L + +IQR+KGLGEM P QLWETT++PE R L Q+ +EDA EA+ +F+
Sbjct: 553 LDAALLELGGKDTNTNIQRYKGLGEMNPEQLWETTMDPEHRTLLQVTVEDAMEADEIFTI 612
Query: 481 LMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R++ I+ NA +VNLD
Sbjct: 613 LMGTKVEPRRDFIESNADKVVNLD 636
>gi|304437923|ref|ZP_07397869.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas sp. oral
taxon 149 str. 67H29BP]
gi|304369063|gb|EFM22742.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas sp. oral
taxon 149 str. 67H29BP]
Length = 685
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 251/500 (50%), Positives = 336/500 (67%), Gaps = 14/500 (2%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT-TAIQFDHNTIAGRIRELAFLNP 65
+SRG VTT H + + D GTR+ F PD ++FT T FD T+ R+RELAFLN
Sbjct: 196 FSRG--VTTTKLH--EIGTSDTTGTRVHFVPDPEIFTVTTYSFD--TLKHRLRELAFLNH 249
Query: 66 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLA 124
+TI L E +++ + F GG+ +V LN K+ +++ + F D I +++A
Sbjct: 250 GITITLTDERGTEVRSE--TFHFDGGIRSFVSHLNRKKETINEEPIYFNGVKDDIVVEIA 307
Query: 125 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 184
+Q+ +D+Y + + + N+I T +GGTH+ G K +LTR N ++ +KDKD +LSGE
Sbjct: 308 MQY-NDSYQENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARRLNVLKDKDGNLSGED 366
Query: 185 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 244
VREGLT +IS++V P+FEGQTKT+LGN EVR +VD V E LTEY E +P V +L K
Sbjct: 367 VREGLTAVISLKVREPQFEGQTKTKLGNSEVRGIVDSIVTEGLTEYFEENPAVTKKVLDK 426
Query: 245 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 304
+L A +A AA++AR+L R+K+ L SSLPGKLADCS P++ EI+IVEGDSAGGSAKQ
Sbjct: 427 ALMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPDQCEIYIVEGDSAGGSAKQ 486
Query: 305 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 364
GRDRRFQAILPLRGKILNVE+ ++ N EI+ +I A G G+ GE+F RY KII
Sbjct: 487 GRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGI-GEEFDLAKRRYSKII 545
Query: 365 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 424
I+TDADVDGAHIRTLLLTFFYRY K L D G +Y+ PPLY++ + K+ Y Y D E K
Sbjct: 546 IMTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVYIAQPPLYQIRKDKKHFYTYSDDEQAK 605
Query: 425 VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA 484
+ + +IQR+KGLGEM P QLWETT+NPE R + Q+ EDA A+ +F+ LMG
Sbjct: 606 KLDEIGRDGV-TIQRYKGLGEMNPEQLWETTMNPEGRTMLQVGAEDAEAADELFTILMGD 664
Query: 485 RVDTRKELIQNAANLV-NLD 503
+V+ R++ I+ A LV NLD
Sbjct: 665 KVEPRRQFIEENAKLVRNLD 684
>gi|422876732|ref|ZP_16923202.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK1056]
gi|332361540|gb|EGJ39344.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK1056]
Length = 649
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/508 (46%), Positives = 339/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 149 HYQEYRRGHVVADLEI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 205 LNRGLRISITDKRDGME--QVKDYHYEGGIASYVQYINENKDVIFETPIYTDGEMDDITV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 263 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 322 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVARKI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P+E+E+FIVEGDSAGGS
Sbjct: 382 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPQETELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 442 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V +Y A
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVYIAQPPIYGVKVGSEVKEYIQPGA 560
Query: 421 ----ELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+ + + + +IQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 561 NQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 620
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 621 KIFDMLMGDRVEPRREFIEENAVYSTLD 648
>gi|238018216|ref|ZP_04598642.1| hypothetical protein VEIDISOL_00040 [Veillonella dispar ATCC 17748]
gi|237864687|gb|EEP65977.1| hypothetical protein VEIDISOL_00040 [Veillonella dispar ATCC 17748]
Length = 633
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/499 (48%), Positives = 339/499 (67%), Gaps = 12/499 (2%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
++RG T + + + GT + F PD ++F T + F+ +T+ R++ELAFLN
Sbjct: 144 FARGHK----TSELHEIGKAEGTGTTVIFKPDAEIFETTV-FNFDTLKIRLQELAFLNKG 198
Query: 67 LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLAL 125
L I L D E+ + + + GGL ++ +LN +K+ ++ V+ D + +D+AL
Sbjct: 199 LRITL--SDLRQEEPRVESFHYEGGLSSFIAFLNENKEVVNPTVIDIENTKDDVVVDVAL 256
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
Q+ +D+YS+ +L + N+I T+DGGTH+ G +A+LTRTLN G+KS +K+ + +LSGE V
Sbjct: 257 QY-NDSYSENLLSFVNNINTVDGGTHLSGFRAALTRTLNDYGRKSGLIKENESNLSGEDV 315
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 245
REGLT ++SV+V P+FEGQTKT+LGN EV+ + D V E L + E HP I+ K+
Sbjct: 316 REGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVSEGLKTFFEEHPQDAKKIIEKA 375
Query: 246 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 305
A +A AA++ARDL R+K+ L SSLPGKLADCS +EI++VEGDSAGGSAKQG
Sbjct: 376 TMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSMTEIYLVEGDSAGGSAKQG 435
Query: 306 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 365
RDRR+QAILPLRGKILNVE+ + N EI+++I A G G+ GE+F RY+KIII
Sbjct: 436 RDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTGI-GEEFDITKSRYNKIII 494
Query: 366 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 425
+TDADVDGAHIRTLLLTFFYRY K L +EG IY+ PPLY++++GK Y Y DAEL
Sbjct: 495 MTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQIKKGKSHWYVYSDAELTAK 554
Query: 426 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 485
+ + +IQR+KGLGEM P QLWETT+NPE R + Q+ +ED+ EA+ +F+ LMG +
Sbjct: 555 LDEVGRDGI-TIQRYKGLGEMNPEQLWETTMNPEHRTILQVSLEDSIEADKIFTVLMGDK 613
Query: 486 VDTRKELIQNAANLV-NLD 503
V+ R++ I++ A V NLD
Sbjct: 614 VEPRRKFIEDNAKYVRNLD 632
>gi|380693260|ref|ZP_09858119.1| DNA gyrase subunit B [Bacteroides faecis MAJ27]
Length = 653
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 237/512 (46%), Positives = 344/512 (67%), Gaps = 18/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y GKP+ + V V D GTR +FWPD +FT + +D+ +A R+RELA+
Sbjct: 148 YQQEYEIGKPLYS----VKEVGVSDITGTRQQFWPDDTIFTETV-YDYKILAARLRELAY 202
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDVDG 118
LN L I+L R+ ++ + + +E F++ GL E+V+++ + ++ L +DV+ + G
Sbjct: 203 LNAGLRISLTDRRVVNEEDGSFKSEVFYSEEGLREFVRFIESSREHLINDVIYLNSEKQG 262
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I I++A+ + + +S+ + Y N+I TI+GGTH+ G + +LTRTL + SK ++ +
Sbjct: 263 IPIEIAIMYNT-GFSENVHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDSKMLEKVKV 321
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+SG+ REGLT +ISV+V P+FEGQTKT+LGN EV VDQ+V E L YLE HP
Sbjct: 322 EISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEVLAYYLEEHPKEA 381
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
+I+ K + A A AA++AR++V++KS + LPGKLADCS P + E+F+VEGDSA
Sbjct: 382 KTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDPSKCELFLVEGDSA 441
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA- 357
GG+AKQGR+R FQAILPLRGKILNVE+ +++EI+N+ ALG+ + ED KEA
Sbjct: 442 GGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYTALGVTIGTEDDSKEAN 501
Query: 358 ---LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
LRYHKIII+TDADVDG+HI TL++TFF+RY + G +Y+ PPLY ++GK +
Sbjct: 502 IEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLYIATPPLYLCKKGKVEE 561
Query: 415 YCYDDAELKKVKSSFPS---NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
YC+ DA+ +K ++ NA+++ QR+KGLGEM QLWETT++PE RMLKQ+ I++A
Sbjct: 562 YCWTDAQRQKFIDTYGGGLENAVHT-QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNA 620
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AEA+ +FS LMG V R+E I+ A N+D
Sbjct: 621 AEADYIFSMLMGEDVGPRREFIEENATYANID 652
>gi|296131558|ref|YP_003638805.1| DNA topoisomerase IV subunit B [Thermincola potens JR]
gi|296030136|gb|ADG80904.1| DNA topoisomerase IV, B subunit [Thermincola potens JR]
Length = 635
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 246/503 (48%), Positives = 341/503 (67%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ+Y RG PVT L + + GT+I F PD ++F + F+ T++ R++EL+F
Sbjct: 144 YHQRYERGLPVTELKI----IGDSNSTGTKITFKPDHEIFEDLV-FNFETLSQRLKELSF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN LTI L+ E EK +E GG+ ++V+ LN +K LH + + F + D + +
Sbjct: 199 LNKGLTIILKDERDGNEKTFQHE----GGIIDFVKHLNKNKDVLHPEPIYFEGEKDDVMV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D Y++ + + N+I T +GGTH G K +LTR +N +K +K+ + +L+
Sbjct: 255 EIALQY-NDGYTENIFSFVNNIHTHEGGTHEAGFKTALTRVVNDYARKYNLLKENENNLT 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT IISV+V P+FEGQTKT+LGN EVR +VD V E + +LE HP I
Sbjct: 314 GEDIREGLTAIISVKVREPQFEGQTKTKLGNSEVRGIVDAVVVEGVGTFLEEHPPFAKRI 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
K+++A +A AA++AR+L R+K+ L S+SLPGKLADCS P E+++VEGDSAGGS
Sbjct: 374 TEKAINAARAREAARKARELTRRKNALESTSLPGKLADCSLKDPAVCELYLVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILNVE+ + NEEI+ +I A+G G+ +DF RYH
Sbjct: 434 AKQGRDRRFQAILPLRGKILNVEKARLDKVLANEEIRAMITAMGTGIS-DDFDISKARYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLYKV++ K Y Y D E
Sbjct: 493 KLIIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGYVYIAQPPLYKVKKNKIDNYVYSDHE 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+K+ + + S+QR+KGLGEM P QLWETT+NPE R + ++ +EDA A+ +F+ L
Sbjct: 553 LEKLLNQIGREGV-SLQRYKGLGEMNPEQLWETTMNPETRTILRVNLEDAMIADEIFTIL 611
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R+E IQ A V NLD
Sbjct: 612 MGDKVEPRREFIQTHAKEVRNLD 634
>gi|374578727|ref|ZP_09651821.1| DNA gyrase, B subunit [Desulfosporosinus youngiae DSM 17734]
gi|374414809|gb|EHQ87244.1| DNA gyrase, B subunit [Desulfosporosinus youngiae DSM 17734]
Length = 644
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/503 (46%), Positives = 340/503 (67%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y++GKP T L + + + + GT+I+F PD ++F + +D N +A R+REL+F
Sbjct: 153 YRQEYAKGKPTTEL----IKIRTNETSGTKIKFMPDSEIFEDTV-YDFNILAHRLRELSF 207
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN +TI L +D N + +GG++++V +LN K LH + + D + +
Sbjct: 208 LNKSITINL----ADERSNVKETFLHSGGIQDFVIYLNKSKDCLHPLPIYIETTKDNVQV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ +Q+ +D+Y++ + YAN+I T +GGTH G K++LTR +N +K+ +K D +LS
Sbjct: 264 EVCIQY-NDSYAENLFSYANNINTQEGGTHEAGFKSALTRVVNDYARKNNMLKATDSNLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT +ISV+VP+P+FEGQTKT+LGN E+R +VD + E LT +LE +P +
Sbjct: 323 GDDIREGLTAVISVKVPDPQFEGQTKTKLGNSEIRGIVDSATGEGLTIFLEENPAIARKF 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KS+ A +A AA++AR+L R+KS L +SLPGKLADCS P+ E++IVEGDSAGGS
Sbjct: 383 IDKSVQAARARDAARKARELTRRKSALEGTSLPGKLADCSWKEPDLCEMYIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILNVE+ + N EI+ +I A+G G+ +DF RYH
Sbjct: 443 AKQGRDRRFQAILPLRGKILNVEKARLDKILGNAEIRAMITAMGTGIS-DDFDIAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLTFFYRY + L + +Y+ PPL+K+++G+ +QY Y D E
Sbjct: 502 KLIIMTDADVDGAHIRTLLLTFFYRYMRPLIENNYVYIAQPPLFKIKKGRDIQYVYSDVE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + + IQR+KGLGEM P QLWETT++P R + ++ +EDA +FS L
Sbjct: 562 LTNTLEKIGRDKV-EIQRYKGLGEMNPDQLWETTMDPANRTILRVTMEDAMRTEEMFSVL 620
Query: 482 MGARVDTRKELIQN-AANLVNLD 503
MG +V+ R++ I A ++ NLD
Sbjct: 621 MGDKVEPRRDFINRYAKDVRNLD 643
>gi|303230676|ref|ZP_07317426.1| DNA gyrase, B subunit [Veillonella atypica ACS-049-V-Sch6]
gi|401680218|ref|ZP_10812141.1| DNA gyrase, B subunit [Veillonella sp. ACP1]
gi|302514731|gb|EFL56723.1| DNA gyrase, B subunit [Veillonella atypica ACS-049-V-Sch6]
gi|400218833|gb|EJO49705.1| DNA gyrase, B subunit [Veillonella sp. ACP1]
Length = 633
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/499 (48%), Positives = 339/499 (67%), Gaps = 12/499 (2%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
+SRG T + + + GT + F PD ++F T + F+ +T+ R++ELAFLN
Sbjct: 144 FSRGHK----TSELHEIGKAEGTGTTVIFKPDSEIFETTV-FNFDTLKIRLQELAFLNKG 198
Query: 67 LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLAL 125
L I L D E+ + + + GGL ++ +LN +K+ ++ V+ D + +D+AL
Sbjct: 199 LRITL--SDLRQEEPRIESFHYEGGLSSFITFLNENKEVVNPTVIDIENTKDDVVVDVAL 256
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
Q+ +D+YS+ +L + N+I T+DGGTH+ G +A+LTRTLN G+KS +K+ + +LSGE V
Sbjct: 257 QY-NDSYSENLLSFVNNINTVDGGTHLSGFRAALTRTLNDYGRKSGLIKENESNLSGEDV 315
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 245
REGLT ++SV+V P+FEGQTKT+LGN EV+ + D V E L + E HP I+ K+
Sbjct: 316 REGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVSEGLKTFFEEHPQDAKKIIEKA 375
Query: 246 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 305
A +A AA++ARDL R+K+ L SSLPGKLADCS +EI++VEGDSAGGSAKQG
Sbjct: 376 TMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSMTEIYLVEGDSAGGSAKQG 435
Query: 306 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 365
RDRR+QAILPLRGKILNVE+ + N EI+++I A G G+ G++F RY+KIII
Sbjct: 436 RDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTGI-GDEFDITKSRYNKIII 494
Query: 366 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 425
+TDADVDGAHIRTLLLTFFYRY K L +EG IY+ PPLY++++GK Y Y DAEL
Sbjct: 495 MTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQIKKGKSHWYVYSDAELTAK 554
Query: 426 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 485
+ + +IQR+KGLGEM P QLWETT+NPE R + Q+ +ED+ EA+ +F+ LMG +
Sbjct: 555 LDEVGRDGI-TIQRYKGLGEMNPEQLWETTMNPENRTILQVSLEDSIEADKIFTVLMGDK 613
Query: 486 VDTRKELIQNAANLV-NLD 503
V+ R++ I++ A V NLD
Sbjct: 614 VEPRRKFIEDNAKYVRNLD 632
>gi|336252328|ref|YP_004595435.1| DNA gyrase subunit B [Halopiger xanaduensis SH-6]
gi|335336317|gb|AEH35556.1| DNA gyrase, B subunit [Halopiger xanaduensis SH-6]
Length = 646
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/501 (45%), Positives = 335/501 (66%), Gaps = 10/501 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ + +G+PV + V ++ + GT +RFWPD +F A +F +T+A R+RELAF
Sbjct: 142 FRHAFEQGEPVGDME-RVRDMEPDEETGTEVRFWPDTGIFE-AGEFSFSTLANRLRELAF 199
Query: 63 LNPKLTIALRKE-----DSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDV 116
LN + I LR E D+D E Y + GG+ E+V++LN + +HD V+ F +
Sbjct: 200 LNSGVRITLRDEREDAGDADEEGPVEETYEYEGGIREFVEYLNETRSAMHDDVIYFEDEE 259
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
I +++A+Q ++ ++ +AN+I T +GGTH+ G K +LTRT+N ++ + D
Sbjct: 260 QNIQVEVAMQ-ATEELQGSIHAFANNINTREGGTHLTGFKTALTRTVNDYANENSMLSDL 318
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
D +L GE +REGLT +ISV+ P+P+FEGQTKT+LGN EVR +V+ ++ E L Y E +PD
Sbjct: 319 DNNLKGEDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESAMHEGLGTYFEENPD 378
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
++I++K++ A KA +AA++A +L R+KS L S+SLPGKLADC + P+E+E+FI EGD
Sbjct: 379 TAEAIINKAVEAAKARMAAQKAEELTRRKSALESTSLPGKLADCQTKDPDEAELFIAEGD 438
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SAGGSAKQ R+ FQA+LP+RGK+LNVE+ + +N++I+N+I A+G GV G++F E
Sbjct: 439 SAGGSAKQARNPEFQAVLPIRGKVLNVEKHRLDRVLENDQIRNIITAIGAGV-GDEFDLE 497
Query: 357 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 416
+RY K+I+ TDADVDGAHIRTLLLTFFYR+ + L + G +Y PPLY++ +
Sbjct: 498 DVRYKKVIMATDADVDGAHIRTLLLTFFYRHMRPLLEGGYVYATQPPLYRIRYRGETYDA 557
Query: 417 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
D E ++ + +QRFKGLGEM P QLW+TT++P R+LKQ+ +EDAA A+
Sbjct: 558 MTDQERDEIIEEKCDGSPSQVQRFKGLGEMNPQQLWDTTMDPSNRILKQITVEDAAAADK 617
Query: 477 VFSSLMGARVDTRKELIQNAA 497
+FS LMG V+ RK+ I+ A
Sbjct: 618 MFSVLMGDAVEPRKQFIKENA 638
>gi|78707355|gb|ABB46483.1| DNA gyrase subunit B [Acholeplasma laidlawii]
Length = 631
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/496 (48%), Positives = 324/496 (65%), Gaps = 13/496 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QKY RG P L + D+ GT I F D +FT + +++ T+ RI++LAF
Sbjct: 140 YEQKYERGIPAYDLKIK----GNTDKTGTIISFQADPLIFTETVIYNYETLRTRIQQLAF 195
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L + L D E+++ + + GG+ EYV++LN K +H D++ K+ DGIT+
Sbjct: 196 LNKGLKLNLI--DDRFEESKIESFHYEGGITEYVKFLNQSKSKIHNDIIYIDKEQDGITV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+LA+Q+ D+YS + + N+I T +GG H +G K +LTR ++ K KD S+S
Sbjct: 254 ELAMQFV-DSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYADDLKMKKDD--SIS 310
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT IISV+ P P+FEGQTKT+LGNPEVR + Q E + +L +P +I
Sbjct: 311 GEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEAIERFLMENPTQAKAI 370
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AA++A+DL R+KS L + KLADC S PE+SEI+IVEGDSAGGS
Sbjct: 371 VEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDPEKSEIYIVEGDSAGGS 430
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRD FQAI+PLRGK+LNVE+ M N+EI NLI+A+G G+ E F RYH
Sbjct: 431 AKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGISDE-FDITKARYH 489
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTF +R+ + L D G +Y PPLYK+ G+ QY Y++ E
Sbjct: 490 KIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKISWGRNFQYAYNEQE 549
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ + + SIQR+KGLGEM QLW+TT++P +R L Q+ +EDA EA+ VFS L
Sbjct: 550 LNEILKTIETKP--SIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKLEDAIEADQVFSML 607
Query: 482 MGARVDTRKELIQNAA 497
MG V+ RKE IQN A
Sbjct: 608 MGEEVEPRKEFIQNNA 623
>gi|433590818|ref|YP_007280314.1| DNA gyrase, B subunit [Natrinema pellirubrum DSM 15624]
gi|448331776|ref|ZP_21521027.1| DNA gyrase subunit B [Natrinema pellirubrum DSM 15624]
gi|433305598|gb|AGB31410.1| DNA gyrase, B subunit [Natrinema pellirubrum DSM 15624]
gi|445628735|gb|ELY82038.1| DNA gyrase subunit B [Natrinema pellirubrum DSM 15624]
Length = 643
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 228/498 (45%), Positives = 336/498 (67%), Gaps = 7/498 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ + G+PV + V ++S + GT+I+FWPD +F T + +T++ R+RELAF
Sbjct: 142 FRHAFEGGEPVGDME-RVRDMESDEETGTQIQFWPDTGIFETG-EMSFSTLSNRLRELAF 199
Query: 63 LNPKLTIALR--KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGI 119
LN + I LR +E++D Y + GG+ E+V++LN + +H DV+ F + I
Sbjct: 200 LNSGVRITLRDEREETDDGDVVSETYEYDGGIREFVEYLNETRSAMHEDVIYFEDEEQSI 259
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I++A+Q + ++ +AN+I T +GGTH+ G K +LTRT+N ++ + D D +
Sbjct: 260 QIEVAMQ-ATQELQGSIHAFANNINTREGGTHLTGFKTALTRTVNDYANENDLLSDLDNN 318
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE +REGLT +IS++ P+P+FEGQTKT+LGN EVR +V+ ++ E L Y E HPD +
Sbjct: 319 LTGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIVESAMHEGLGTYFEEHPDTAE 378
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
SI++K++ A KA +AA++A +L R+KS L S+SLPGKLADC + PEE+E+FI EGDSAG
Sbjct: 379 SIVNKAVEAAKARMAAQKAEELTRRKSALESTSLPGKLADCQTKDPEEAELFIAEGDSAG 438
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQ R+ QAILP++GKILNVE+ + +N+EI+N+I A+G G+ G++F E +R
Sbjct: 439 GSAKQARNPDLQAILPIKGKILNVEKHRLDRILENDEIRNMITAIGAGI-GDEFDIEDVR 497
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
Y KII+ TDADVDGAHIRTLLLTFFYR+ + L + G +Y PPLY++ + +
Sbjct: 498 YKKIIMATDADVDGAHIRTLLLTFFYRHMRPLLEGGYVYATQPPLYRIRYRGETYDAMTE 557
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
AE ++ + +QRFKGLGEM P QLW+TT++P+ R+LKQ+ IEDAA A+ +FS
Sbjct: 558 AERDEIVAEKCDGNPSQVQRFKGLGEMNPQQLWDTTMDPDNRILKQITIEDAAAADKMFS 617
Query: 480 SLMGARVDTRKELIQNAA 497
LMG V+ RK+ I+ A
Sbjct: 618 VLMGDAVEPRKQFIKEHA 635
>gi|422858747|ref|ZP_16905397.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK1057]
gi|327459890|gb|EGF06230.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK1057]
Length = 649
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/508 (46%), Positives = 339/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 149 HYQEYRRGHVVADLEI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 205 LNRGLRISITDKRDGME--QAKDYHYEGGIASYVQYINENKDVIFETPIYTDGEMDDITV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 263 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 322 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVARKI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P+E+E+FIVEGDSAGGS
Sbjct: 382 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPQETELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 442 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V +Y A
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVYIAQPPIYGVKVGSEVKEYIQPGA 560
Query: 421 ----ELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+ + + + +IQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 561 NQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 620
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 621 KIFDMLMGDRVEPRREFIEENAVYSTLD 648
>gi|198274299|ref|ZP_03206831.1| hypothetical protein BACPLE_00442 [Bacteroides plebeius DSM 17135]
gi|198272789|gb|EDY97058.1| DNA gyrase, B subunit [Bacteroides plebeius DSM 17135]
Length = 654
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/512 (46%), Positives = 330/512 (64%), Gaps = 17/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y GKP+ V V + D GTR FWPD +FT ++ ++ + R+RELA+
Sbjct: 148 YQQEYECGKPLYA----VKEVGTTDITGTRQTFWPDGSIFTVT-EYKYSILQARMRELAY 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAG--GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN +TI L + E Y + F G++E+V++LN++ PL DV+ + GI
Sbjct: 203 LNKGITITLTDKRVKEEDGSYKQEKFHSEEGVKEFVRFLNSNNTPLIDDVIYLNTEKQGI 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I+ A+ + + + + + Y N+I TI+GGTH G + +LTR L ++SK ++ +
Sbjct: 263 PIECAIMY-NTGFRENLHSYVNNINTIEGGTHEAGFRMALTRVLKKYAEESKALEKAKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SGE REGL +ISV+V P+FEGQTKT+LGN EV V+Q+V E LT YLE HP
Sbjct: 322 ISGEDFREGLIAVISVKVSEPQFEGQTKTKLGNNEVSGAVNQAVGEALTYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A A +AA++AR+ V++KS + LPGKLADCSS EE E+F+VEGDSAG
Sbjct: 382 IIVDKVVLAATARVAARKARESVQRKSPMGGGGLPGKLADCSSRVAEECELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFKKEA 357
GSAKQGR R+FQAILPLRGKILNVE+ ++++E+ N+I+ALG+ GV GE+ K+A
Sbjct: 442 GSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQALGVRFGVDGEEDSKKA 501
Query: 358 ----LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV 413
LRYHK+II+TDADVDG+HI TL++T FYRY + G +Y+ PPLYK +GK
Sbjct: 502 NIDKLRYHKVIIMTDADVDGSHIDTLIMTLFYRYMPEVIQGGHLYIATPPLYKCSKGKIS 561
Query: 414 QYCYDDAELKKVKSSFPSNALYSI--QRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
+YCY D + + I QR+KGLGEM P QLWETT+NPE R+LKQ+ IE+A
Sbjct: 562 EYCYTDEARQAFIQKYGEGNEQGIHTQRYKGLGEMNPEQLWETTMNPETRILKQVNIENA 621
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AEA+ +FS LMG V R+E I+ A N+D
Sbjct: 622 AEADYIFSMLMGDDVGPRREFIEKNATYANID 653
>gi|406025870|ref|YP_006724702.1| DNA gyrase subunit B [Lactobacillus buchneri CD034]
gi|405124359|gb|AFR99119.1| DNA gyrase subunit B [Lactobacillus buchneri CD034]
Length = 647
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 238/503 (47%), Positives = 334/503 (66%), Gaps = 8/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ +SRG T + V+ S D GT++ F PD +F +D + R+RELAF
Sbjct: 150 YYMDFSRGHVKTKM--KVVREVSDDLHGTKVHFLPDPDIFRETTTYDIKVLTARLRELAF 207
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
LN L I +R D PEK ++ + GG++ YV++L+ K+ L D + + V +GIT+
Sbjct: 208 LNKGLRIVVR--DLRPEKPTEQDFMYEGGIKHYVEYLDNSKETLLDEPIYVEGVMNGITV 265
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y +T++ + N+I T +GGTH EG K +LTR +N +K+K +KD + +LS
Sbjct: 266 EVAIQYTND-YHNTLMTFTNNIHTYEGGTHEEGFKRALTRVINDYARKNKLLKDNEPNLS 324
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG T ++S++ P+P+FEGQTKT+LGN + R V D+ ++ T++L +P + I
Sbjct: 325 GEDVREGTTAVVSIKHPDPQFEGQTKTKLGNSDARTVTDRIFSDHFTKFLMENPKMARKI 384
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ + + A KA AAKRAR++ R+KS L S+LPGKLAD +S P+ SE+FIVEGDSAGGS
Sbjct: 385 VDRGMLASKARSAAKRAREVTRKKSGLEISNLPGKLADNTSKDPKISELFIVEGDSAGGS 444
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R QAILP+RGKILNVE+ + NEEI++L A+G G GEDF + YH
Sbjct: 445 AKQGRSRLTQAILPIRGKILNVEKASMDRILANEEIRSLFTAMGTGF-GEDFDLSKINYH 503
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHI+TLLLT YRY + L D G +YV PPLY+V +GK +Y D +
Sbjct: 504 KLIIMTDADVDGAHIQTLLLTLIYRYMRPLIDAGFVYVAQPPLYQVRQGKMSRYIDSDDD 563
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + + IQR+KGLGEM QLW+TT+NPE R L ++ DAAEA+ VFS L
Sbjct: 564 LNAFLGTLQPSPKPVIQRYKGLGEMDAEQLWDTTMNPENRHLLRVESSDAAEADKVFSML 623
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R+E I++ A V NLD
Sbjct: 624 MGDKVEPRREFIEDNATFVENLD 646
>gi|409386044|ref|ZP_11238523.1| DNA gyrase subunit B [Lactococcus raffinolactis 4877]
gi|399206655|emb|CCK19438.1| DNA gyrase subunit B [Lactococcus raffinolactis 4877]
Length = 653
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/507 (45%), Positives = 333/507 (65%), Gaps = 14/507 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG + + + DR GT + F PD +FT +FD +A R+RELAF
Sbjct: 154 YYQEYHRG----VVGGDLEMIGETDRHGTTVHFTPDPTIFTETTEFDFQKLAKRVRELAF 209
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ D PE+ + Y + GG++ YV++LN +K L + F + +++GI +
Sbjct: 210 LNSGLRISIT--DKRPEEAESLHYHYEGGIQSYVEYLNEEKTVLFEPAIFTEGEMEGIAV 267
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +Y +L +AN+I T +GGTH +G + +LTR +N+ K +K +K+ + +L+
Sbjct: 268 EVAMQYTG-SYHSMVLSFANNISTHEGGTHEQGFRTALTRVINNYAKSNKLLKENEENLT 326
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT +ISV+ PNP+FEGQTKT+LGN EV +V++ E +L +P V I
Sbjct: 327 GDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVSGIVNKLFSEEFGTFLLENPQVARRI 386
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P ++EIFIVEGDSAGGS
Sbjct: 387 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPTQTEIFIVEGDSAGGS 446
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 447 AKSGRNREFQAILPIRGKILNVEKASMEKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 505
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY----CY 417
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PP+Y V+ G ++ Y
Sbjct: 506 KLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGVKLGDKITYIQPGVN 565
Query: 418 DDAELK-KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
+ EL+ V N +QR+KGLGEM QLWETT++PE R + Q+ +EDAAEA+
Sbjct: 566 QETELQTAVLEMTTGNRKPIVQRYKGLGEMDDHQLWETTMDPEHRTMAQVSVEDAAEADQ 625
Query: 477 VFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R++ I+ A +D
Sbjct: 626 IFDMLMGDRVEPRRDFIEANAQYSTID 652
>gi|299143458|ref|ZP_07036538.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298517943|gb|EFI41682.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 639
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 238/506 (47%), Positives = 351/506 (69%), Gaps = 16/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDS--KDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
Y QK+SRG T L + V+ K+ GT+I F PD ++F T ++F+ ++ R RE+
Sbjct: 144 YEQKFSRGIAKTQL----IEVEKLKKEETGTKIFFRPDPEIFDT-VEFEFEILSKRFREM 198
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGI 119
AFLN + I D + Y + GG++ +V+++N K +H + + ++ +
Sbjct: 199 AFLNKGIKIQF----IDHRIGKDETYHYEGGIKSFVEYINRKKTAIHKEIIYIDEIRENT 254
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ+ +D+Y++ +L +AN+I T +GG+H+ G +++LTR +N G+K +K+K+ +
Sbjct: 255 AVEIALQY-TDSYTENILTFANNINTEEGGSHLSGFRSALTRCINDYGRKYNIIKEKEEN 313
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSGE VREGLT +ISV++PNP+FEGQTK +LGN E R +VD SV E L+ +LE +P V
Sbjct: 314 LSGEDVREGLTGVISVKLPNPQFEGQTKAKLGNSETRGIVDSSVSENLSSFLEENPKVAK 373
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+IL KSLSA +A AA++ARDL R+K++L S +LPGKLADC ++ E +EIF+VEGDSAG
Sbjct: 374 TILEKSLSARRAREAARKARDLTRKKNILESMTLPGKLADCQNSDNETTEIFLVEGDSAG 433
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK RD FQAILPLRGKI+NVE+ + ++EI+ +I A G G+ G +F + LR
Sbjct: 434 GSAKDARDSVFQAILPLRGKIMNVEKARLDKILNSDEIKAMITAFGTGI-GSEFSIDNLR 492
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG-KQVQYCYD 418
Y+KIII+TDADVDGAHI TLLLTFF+RY + L +EG +YV PPL+ + +G K ++YCYD
Sbjct: 493 YNKIIIMTDADVDGAHIMTLLLTFFFRYMRPLIEEGHVYVAQPPLFGILKGTKALRYCYD 552
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D EL++ + + + I+R+KGLGEM P LWETT+NP+ R+L ++ I+DA EA+ F
Sbjct: 553 DRELQRALNELGRDKKFDIKRYKGLGEMNPEDLWETTMNPDHRILLKVEIKDAIEADETF 612
Query: 479 SSLMGARVDTRKELIQ-NAANLVNLD 503
S LMG+ V+ R++ IQ NA + N+D
Sbjct: 613 SMLMGSEVEPRRDFIQENALFVENID 638
>gi|422846387|ref|ZP_16893070.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK72]
gi|325687830|gb|EGD29850.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK72]
Length = 649
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/508 (46%), Positives = 339/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 149 HYQEYRRGHVVADLEI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 205 LNRGLRISITDKRDGME--QSKDYHYEGGIASYVQYINENKDVIFETPIYTDGEMDDITV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 263 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 322 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVARKI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P+E+E+FIVEGDSAGGS
Sbjct: 382 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPQETELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 442 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V +Y A
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVYIAQPPIYGVKVGSEVKEYIQPGA 560
Query: 421 ----ELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+ + + + +IQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 561 NQEEELQTALARYSEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 620
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 621 KIFDMLMGDRVEPRREFIEENAVYSTLD 648
>gi|262039519|ref|ZP_06012821.1| DNA gyrase, B subunit [Leptotrichia goodfellowii F0264]
gi|261746500|gb|EEY34037.1| DNA gyrase, B subunit [Leptotrichia goodfellowii F0264]
Length = 660
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 245/526 (46%), Positives = 339/526 (64%), Gaps = 34/526 (6%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
Q Y RG+PV+ + + S + GT +F D ++F T + ++ + + R++ELA+LN
Sbjct: 141 QTYKRGEPVSDV--EKIGEASPEAHGTTTKFKADPEIFETTV-YEFSVLESRLKELAYLN 197
Query: 65 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKD--------- 115
LTI L E D EK + ++ F GG+ +++ + D++ + D V + D
Sbjct: 198 KGLTITLIDE-RDQEKIKEEKFLFEGGIIDFLNEI-ADEEKITDEVIYMSDTYEVEAAKE 255
Query: 116 ---VDG-------------ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL 159
VD + +++A+ + + + + + N+I T +GGTH+ G + +L
Sbjct: 256 VEIVDDNGNTVKKMRAAKFVEVEIAMSYTI-SQRENVYSFVNNINTHEGGTHVSGFRTAL 314
Query: 160 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 219
TRT+N + K+ VKDKD + G VREGL C+ISV++P P+FEGQTKT+LGN EV +V
Sbjct: 315 TRTINDIAKQMNIVKDKDGTFQGTDVREGLVCVISVKIPEPQFEGQTKTKLGNSEVTGIV 374
Query: 220 DQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLAD 279
V L YLE HP + I+ K + +A AAK+AR+LV +K+ L SLPGKLAD
Sbjct: 375 SNIVGNNLKFYLEDHPKEAEKIIEKMTMSKRAREAAKKARELVLRKNTLEVGSLPGKLAD 434
Query: 280 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 339
CSS P ESEIFIVEG+SAGGSAKQGRDRRFQAILPLRGKILNVE+ + +N EI+
Sbjct: 435 CSSKDPSESEIFIVEGNSAGGSAKQGRDRRFQAILPLRGKILNVEKSGMHKLLENAEIRA 494
Query: 340 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 399
+I A G G G+D E LRYHKIII+TDADVDGAHIRTL+LTFFYR + L +EG IY+
Sbjct: 495 MITAFGAGF-GDDMDLEKLRYHKIIIMTDADVDGAHIRTLMLTFFYRQLRELINEGYIYI 553
Query: 400 GVPPLYKVERGKQVQYCYDDAELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNP 458
PPLYKV+ GK ++Y Y D ++KK+ S N Y+IQR+KGLGEM P QLWETTL+P
Sbjct: 554 AQPPLYKVQAGKAIKYAYSDEQMKKITSVLERDNRRYTIQRYKGLGEMNPEQLWETTLDP 613
Query: 459 EQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV-NLD 503
E R L ++ +EDA+ A+ +F+ LMG +V+ R++ I+ AN V NLD
Sbjct: 614 EVRTLLKVTMEDASYADKMFNILMGDKVEPRRQFIEENANYVRNLD 659
>gi|18308988|ref|NP_560922.1| DNA gyrase subunit B [Clostridium perfringens str. 13]
gi|18143663|dbj|BAB79712.1| DNA gyrase subunit B [Clostridium perfringens str. 13]
Length = 638
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/507 (47%), Positives = 351/507 (69%), Gaps = 19/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG +T L + + GT++ F PD ++F ++D ++ R+RELAF
Sbjct: 144 WKQSYKRGAVLTGLE----RIGEAEGSGTKVHFKPDHEIFEET-EYDFEILSQRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I L E D K + Y + GG++ +V +LN +K+ LHD V G + DG
Sbjct: 199 LNKGINITLIDEREDEVKEEV--YHYEGGIKSFVSYLNRNKEVLHDEPIYVEGLK---DG 253
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I ++++LQ+ D +++ + +AN+I T++GGTH+ G K +LTR +N G++ +K+ D
Sbjct: 254 IAVEVSLQY-HDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDYGRRFGHLKESDK 312
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSG+ +REGLT ++SV++ +P+FEGQTKT+LGN EVR VD E ++ +LE +P+V
Sbjct: 313 NLSGDDIREGLTAVVSVKISDPQFEGQTKTKLGNSEVRSAVDSISGEGISTFLEENPEVG 372
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K+L A +A AA+RAR+L R KSVL SSLPGKLADCSS P+E EI+IVEGDSA
Sbjct: 373 KIIIEKALLASRAREAARRARELTR-KSVLERSSLPGKLADCSSKDPKECEIYIVEGDSA 431
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR+FQAILPLRGKI+NVE++ + ++ I++++ A+G G+ G +F E +
Sbjct: 432 GGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIRSMVTAIGAGI-GPEFDIEKI 490
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RY++III+TDADVDGAHIRTLLLTFFYRY + L ++G +Y+ PPLYK+ +GKQ +Y Y
Sbjct: 491 RYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYIAQPPLYKISKGKQERYAYS 550
Query: 419 DAELKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
DA ++ F ++ ++QR+KGLGEM QLWETT++PE R+L + IEDA A+ +
Sbjct: 551 DAAADEIIEEFGGKDSSVNVQRYKGLGEMNAGQLWETTMDPESRILLRADIEDAMVADEI 610
Query: 478 FSSLMGARVDTRKELIQ-NAANLVNLD 503
F+ LMG +V+ R+E IQ NA N+ NLD
Sbjct: 611 FTILMGDKVEPRREFIQKNAKNVSNLD 637
>gi|407475899|ref|YP_006789776.1| DNA gyrase subunit B [Exiguobacterium antarcticum B7]
gi|407059978|gb|AFS69168.1| DNA gyrase subunit B [Exiguobacterium antarcticum B7]
Length = 643
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 238/503 (47%), Positives = 337/503 (66%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q Y RG P L + + + GT IRF+PD ++F +++D++ +A R+RELAF
Sbjct: 148 YYQAYHRGVPAEDLAV----IGTSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN LTI + + SD + + + GG++ YV+ LN K+ +H+ V + DGI +
Sbjct: 204 LNKGLTIQITDDRSDEPITR--SFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGIEV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D ++ + + N+I T +GGTH G K +LTR +N KK +KD D +LS
Sbjct: 262 EVALQY-NDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVVNDYAKKFGLMKDADGTLS 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG+ I+S++ PNP+FEGQTKT+LGN + R D +++ +P +I
Sbjct: 321 GEDVREGMIAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSARAI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAKRAR+L R+K VL SSLPGKLADCSS SEI+IVEGDSAGGS
Sbjct: 381 VEKGMMASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILP+RGKILNVE+ + + EI+ +I ALG + G +F E RYH
Sbjct: 441 AKSGRDRHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSI-GSEFNIEKARYH 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLY +++GK + Y +++ E
Sbjct: 500 KVIIMTDADVDGAHIRTLLLTFFYRYMRPLVEHGYVYIAQPPLYGIKQGKNITYVHNERE 559
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + ++ P NA Y IQR+KGLGEM P QLWETT++P R + ++ ++DA EA+ VF L
Sbjct: 560 LNEALAALPENARYDIQRYKGLGEMDPEQLWETTMDPSGRQMLRVELQDAIEADEVFDIL 619
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R++ IQ+ A+ V NLD
Sbjct: 620 MGDQVEPRRDFIQSHAHYVKNLD 642
>gi|392947327|ref|ZP_10312966.1| DNA gyrase subunit B [Lactobacillus pentosus KCA1]
gi|334881371|emb|CCB82238.1| DNA gyrase subunit B [Lactobacillus pentosus MP-10]
gi|339638029|emb|CCC17069.1| DNA gyrase subunit B [Lactobacillus pentosus IG1]
gi|392437461|gb|EIW15346.1| DNA gyrase subunit B [Lactobacillus pentosus KCA1]
Length = 648
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 236/499 (47%), Positives = 331/499 (66%), Gaps = 7/499 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ + RGK T + ++ D GT + F PD +F +D N + RIRELAF
Sbjct: 151 YYMDFERGKVKTPMK--IIGDAPDDAHGTAVHFVPDPDIFRETTTYDINILTTRIRELAF 208
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I +R D+ P++ +++ + GG+ YV++L+ +K L + + + +GIT+
Sbjct: 209 LNKGLRITIR--DNRPDEPTEDDFLYEGGIRHYVEYLDKNKTVLFPEPIYVEGEQNGITV 266
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ D +S+ M + N+I T +GGTH EG K +LTR +N +K+ +K+ D +LS
Sbjct: 267 EVALQYTDDYHSNLMT-FTNNIHTYEGGTHEEGFKRALTRVINDYARKNNLLKESDANLS 325
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG+T ++SV+ P+P+FEGQTKT+LGN + R VD+ E+ ++YL +P V +
Sbjct: 326 GEDVREGMTAVVSVKHPDPQFEGQTKTKLGNSDARAAVDRLFSEHFSKYLMENPSVARKV 385
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLAD +S PE SE+FIVEGDSAGGS
Sbjct: 386 VDKGMLASKARVAAKRAREVTRKKSGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGS 445
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R QAILP+RGKILNVE+ + NEEI++L A+G G G DF YH
Sbjct: 446 AKQGRSRLTQAILPIRGKILNVEKASIDKILANEEIRSLFTAMGTGFGG-DFDLSKANYH 504
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLT FYRY + L D G +Y+ PPLY+V +GK V+Y D E
Sbjct: 505 KLIIMTDADVDGAHIRTLLLTLFYRYMRPLVDAGFVYIAQPPLYQVRQGKFVKYIDSDEE 564
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L +V + +QR+KGLGEM QLWETT++P++R L ++ EDAA+A+ VFS L
Sbjct: 565 LSEVLGQLAPSPKPVVQRYKGLGEMDAEQLWETTMDPDKRRLLRVRDEDAADADGVFSML 624
Query: 482 MGARVDTRKELIQNAANLV 500
MG +V R+E I++ A V
Sbjct: 625 MGDQVKPRREFIEDNAKFV 643
>gi|110799437|ref|YP_694481.1| DNA gyrase subunit B [Clostridium perfringens ATCC 13124]
gi|168207731|ref|ZP_02633736.1| DNA gyrase, B subunit [Clostridium perfringens E str. JGS1987]
gi|168215272|ref|ZP_02640897.1| DNA gyrase, B subunit [Clostridium perfringens CPE str. F4969]
gi|170764021|ref|ZP_02637634.2| DNA gyrase, B subunit [Clostridium perfringens B str. ATCC 3626]
gi|182420561|ref|ZP_02643926.2| DNA gyrase, B subunit [Clostridium perfringens NCTC 8239]
gi|182627057|ref|ZP_02954782.1| DNA gyrase, B subunit [Clostridium perfringens D str. JGS1721]
gi|422347733|ref|ZP_16428644.1| DNA gyrase subunit B [Clostridium perfringens WAL-14572]
gi|110674084|gb|ABG83071.1| DNA gyrase, B subunit [Clostridium perfringens ATCC 13124]
gi|170660917|gb|EDT13600.1| DNA gyrase, B subunit [Clostridium perfringens E str. JGS1987]
gi|170710064|gb|EDT22246.1| DNA gyrase, B subunit [Clostridium perfringens B str. ATCC 3626]
gi|170713332|gb|EDT25514.1| DNA gyrase, B subunit [Clostridium perfringens CPE str. F4969]
gi|177907583|gb|EDT70222.1| DNA gyrase, B subunit [Clostridium perfringens D str. JGS1721]
gi|182379692|gb|EDT77171.1| DNA gyrase, B subunit [Clostridium perfringens NCTC 8239]
gi|373223711|gb|EHP46058.1| DNA gyrase subunit B [Clostridium perfringens WAL-14572]
Length = 638
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/507 (47%), Positives = 350/507 (69%), Gaps = 19/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG +T L + + GT++ F PD ++F ++D ++ R+RELAF
Sbjct: 144 WKQSYKRGAVLTGLE----KIGEAEGSGTKVHFKPDHEIFEET-EYDFEILSQRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I L E D K + Y + GG++ +V +LN +K+ LHD V G + DG
Sbjct: 199 LNKGINITLIDEREDEVKEEV--YHYEGGIKSFVSYLNRNKEVLHDEPIYVEGLK---DG 253
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I ++++LQ+ D +++ + +AN+I T++GGTH+ G K +LTR +N G++ +K+ D
Sbjct: 254 IAVEVSLQY-HDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDYGRRFGHLKESDK 312
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSG+ +REGLT ++SV++ P+FEGQTKT+LGN EVR VD E ++ +LE +P+V
Sbjct: 313 NLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRSAVDSISGEGISTFLEENPEVG 372
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K+L A +A AA+RAR+L R KSVL SSLPGKLADCSS P+E EI+IVEGDSA
Sbjct: 373 KIIIEKALLASRAREAARRARELTR-KSVLERSSLPGKLADCSSKDPKECEIYIVEGDSA 431
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR+FQAILPLRGKI+NVE++ + ++ I++++ A+G G+ G +F E +
Sbjct: 432 GGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIRSMVTAIGAGI-GPEFDIEKI 490
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RY++III+TDADVDGAHIRTLLLTFFYRY + L ++G +Y+ PPLYK+ +GKQ +Y Y
Sbjct: 491 RYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYIAQPPLYKISKGKQERYAYS 550
Query: 419 DAELKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
DA ++ F ++ ++QR+KGLGEM QLWETT++PE R+L + IEDA A+ +
Sbjct: 551 DAAADEIIEEFGGKDSSVNVQRYKGLGEMNAGQLWETTMDPESRILLRADIEDAMVADEI 610
Query: 478 FSSLMGARVDTRKELIQ-NAANLVNLD 503
F+ LMG +V+ R+E IQ NA N+ NLD
Sbjct: 611 FTILMGDKVEPRREFIQKNAKNVSNLD 637
>gi|254168966|ref|ZP_04875805.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
gi|197622072|gb|EDY34648.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
Length = 648
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 259/521 (49%), Positives = 349/521 (66%), Gaps = 36/521 (6%)
Query: 3 YHQKYSRGKPVTTLTCHVLPV------------DSKDRQ-----GTRIRFWPDKQVFTTA 45
Y Q Y RGKP C V V D D + GT IRF PD ++F T
Sbjct: 143 YFQWYERGKP----QCDVHVVGKIENGNFVWIEDGHDEKFKYSRGTYIRFKPDAEIFETT 198
Query: 46 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKK 104
+F ++ + ++R+LAFLN + IAL E S + E F + GG+ E+V++LN
Sbjct: 199 -EFKYSIVKKKLRDLAFLNRGIEIALEDERSGKK-----EIFKYDGGIVEFVKFLNEGYN 252
Query: 105 PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 163
P+H DVV + + DGI ++ A+Q+ +D+ S+ +L + N+I T++GGTH+ G +++LT+ +
Sbjct: 253 PIHRDVVYGKDEQDGIIVEFAMQY-NDSTSENLLAFVNTIHTVEGGTHVSGFRSALTKVI 311
Query: 164 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 223
N K +K D SL GE VREGLT +I V+ PNP+FEGQTK +LGN EV+ VV V
Sbjct: 312 NDFAKSRNLLKGID-SLQGEDVREGLTAVIHVKHPNPQFEGQTKAKLGNSEVKGVVFSIV 370
Query: 224 QEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSST 283
+ L+ Y E HPDV +I+SK+++A +A +AA++AR+L R+K L S LPGKLADCS
Sbjct: 371 NKILSTYFEEHPDVATNIVSKAIAAARARIAARKARELARRKGYLESLDLPGKLADCSEE 430
Query: 284 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 343
PE +E+FIVEGDSAGGSAKQ RDR FQAILPLRGKILNVE+ ++KN EI+ LI A
Sbjct: 431 NPERAELFIVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARIDKVFKNNEIRALISA 490
Query: 344 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 403
+G GV+ EDF LRY KIII+TDADVDGAHIRTLLLTFFYRY L ++G IY+ P
Sbjct: 491 IGTGVR-EDFDYSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMPELIEKGHIYIAQAP 549
Query: 404 LYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRML 463
LY++++GK + Y Y D E ++ NA S+QRFKGLGEM P QLW+TT+NPE R L
Sbjct: 550 LYRIQKGKNIYYVYSDEEKEEKLRE-LGNA--SVQRFKGLGEMNPQQLWDTTMNPETRRL 606
Query: 464 KQLVIEDAAEANVVFSSLMGARVDTRKE-LIQNAANLVNLD 503
++ IEDAAEA+ +FS LMG +V R+E +IQ+A ++N+D
Sbjct: 607 IRVTIEDAAEADRLFSILMGEQVGPRREFIIQHAKEVMNID 647
>gi|227511156|ref|ZP_03941205.1| DNA gyrase, B subunit [Lactobacillus buchneri ATCC 11577]
gi|227085638|gb|EEI20950.1| DNA gyrase, B subunit [Lactobacillus buchneri ATCC 11577]
Length = 647
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/505 (47%), Positives = 331/505 (65%), Gaps = 12/505 (2%)
Query: 3 YHQKYSRGKPVTTLTC--HVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
Y+ +SRG T + HV S D GT++ F PD +F FD + R+REL
Sbjct: 150 YYMDFSRGHVTTPMKVIDHV----SDDLHGTKVHFLPDPDIFRETTTFDIKVLTARLREL 205
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVD-GI 119
AFLN +L I +R D PEK ++ + GG+ YV++L+ DK+ L + + +D GI
Sbjct: 206 AFLNKELRIIVR--DMRPEKPTEQDFLYEGGIRHYVEYLDKDKETLLKEPIYVEGMDNGI 263
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
T+++A+ + D Y T++ + N+I T +GGTH EG K +LTR +N +K+ +KD + +
Sbjct: 264 TVEVAIDYSED-YHSTLMTFTNNIHTYEGGTHEEGFKRALTRVINDYARKNNLLKDNEAN 322
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSGE VREG T ++S++ P+P+FEGQTKT+LGN + R V D+ ++ +++L +P +
Sbjct: 323 LSGEDVREGTTAVVSIKHPDPQFEGQTKTKLGNSDARTVTDRIFSDHFSKFLMENPKLAR 382
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ + L A KA AAKRAR++ R+KS L SSLPGKLAD +S P+ SE+FIVEGDSAG
Sbjct: 383 KIIDRGLLASKARSAAKRAREVTRRKSGLEISSLPGKLADNTSKDPKISELFIVEGDSAG 442
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGR R QAILP+RGKILNVE+ + NEEI++L A+G G G+DF +
Sbjct: 443 GSAKQGRARLTQAILPIRGKILNVEKASMDRILANEEIRSLFTAMGTGF-GDDFDLSKIN 501
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHI+TLLLT YRY + L D G +YV PPLY+V +GK +Y D
Sbjct: 502 YHKLIIMTDADVDGAHIQTLLLTLIYRYMRPLIDAGYVYVAQPPLYQVRQGKMQRYIDSD 561
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
+L + + + IQR+KGLGEM QLW+TT+NPE R L ++ DAAEAN VFS
Sbjct: 562 DDLNQFLGTLQPSPKPVIQRYKGLGEMDAEQLWDTTMNPENRHLLRVESSDAAEANHVFS 621
Query: 480 SLMGARVDTRKELIQNAANLV-NLD 503
LMG +V+ R+E I++ A V NLD
Sbjct: 622 MLMGDKVEPRREFIEDNATFVENLD 646
>gi|224024595|ref|ZP_03642961.1| hypothetical protein BACCOPRO_01321 [Bacteroides coprophilus DSM
18228]
gi|224017817|gb|EEF75829.1| hypothetical protein BACCOPRO_01321 [Bacteroides coprophilus DSM
18228]
Length = 656
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/516 (46%), Positives = 332/516 (64%), Gaps = 23/516 (4%)
Query: 3 YHQKYSRGKPVTTL----TCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIR 58
Y Q+Y GKP+ + TC + GTR FWPD +FT ++ ++ + R+R
Sbjct: 148 YQQEYECGKPLYPVKEVGTC------APGMTGTRQTFWPDGNIFTVT-EYKYSILQARMR 200
Query: 59 ELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG--GLEEYVQWLNTDKKPL-HDVVGFRKD 115
ELA+LN +TI L + E + + F G++E+V++LN+ PL DV+ +
Sbjct: 201 ELAYLNKGITITLTDKRVKEEDGSFKQEVFHSEEGVKEFVRFLNSTNTPLIDDVIYLNTE 260
Query: 116 VDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKD 175
GI I+ A+ + + + + + Y N+I TI+GGTH G + +LTR L ++SK ++
Sbjct: 261 KQGIPIECAIMY-NTGFRENLHSYVNNINTIEGGTHEAGFRTALTRVLKKYAEESKALEK 319
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
+ +SGE REGL +ISV+V P+FEGQTKT+LGN EV V+Q+V E LT YLE HP
Sbjct: 320 AKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNNEVSGAVNQAVGEALTYYLEEHP 379
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
I+ K + A A +AA++AR+ V++KS + LPGKLADCSS PEE E+F+VEG
Sbjct: 380 KEAKVIVDKVVLAATARIAARKARESVQRKSPMGGGGLPGKLADCSSRNPEECELFLVEG 439
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDF 353
DSAGGSAKQGR R+FQAILPLRGKILNVE+ ++++E+ N+I+ALG+ GV G++
Sbjct: 440 DSAGGSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQALGIRFGVDGDED 499
Query: 354 KKEA----LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVER 409
K+A LRY+KIII+TDADVDG+HI TL++T FYRY + G +Y+ PPLYK +
Sbjct: 500 SKKANIDKLRYYKIIIMTDADVDGSHIDTLIMTLFYRYMPEVIQGGHLYIATPPLYKCSK 559
Query: 410 GKQVQYCYDDAELKKVKSSFPSNALYSI--QRFKGLGEMMPVQLWETTLNPEQRMLKQLV 467
GK +YCY D E + + + I QR+KGLGEM P QLWETT+NPE RMLKQ+
Sbjct: 560 GKISEYCYTDEERQAFMQKYGDGSENGIHTQRYKGLGEMNPEQLWETTMNPETRMLKQVH 619
Query: 468 IEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
IE+AAEA+ +FS LMG V R+E I+ A N+D
Sbjct: 620 IENAAEADYIFSMLMGDDVAPRREFIEKNATYANID 655
>gi|89892751|ref|YP_516238.1| DNA gyrase subunit B [Desulfitobacterium hafniense Y51]
gi|219666076|ref|YP_002456511.1| DNA gyrase subunit beta [Desulfitobacterium hafniense DCB-2]
gi|423075892|ref|ZP_17064606.1| DNA gyrase, B subunit [Desulfitobacterium hafniense DP7]
gi|89332199|dbj|BAE81794.1| DNA gyrase subunit B [Desulfitobacterium hafniense Y51]
gi|219536336|gb|ACL18075.1| DNA gyrase, B subunit [Desulfitobacterium hafniense DCB-2]
gi|361853120|gb|EHL05306.1| DNA gyrase, B subunit [Desulfitobacterium hafniense DP7]
Length = 644
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 344/503 (68%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ++ RGK T L + VD ++ GT I F PD ++F + F +T+A R+REL+F
Sbjct: 151 YHQEFMRGKTKTELAV-IGQVDP-NQTGTTITFSPDPEIFEDTV-FLFDTLAHRLRELSF 207
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN K++I L D +++ Y+ GG+ ++V+++N K+ LH + + F + DG+ +
Sbjct: 208 LNKKVSITL----IDAREDKKEVYYHTGGIYDFVKYINRSKESLHPEPIYFEAEKDGVQV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ +D Y + + YAN+I T +GGTH G KA+LTR N +K+ +K + +LS
Sbjct: 264 EVSMQY-NDGYVENLFSYANNIHTHEGGTHESGFKAALTRVANDYARKNNILKANEANLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT +ISV+VP P+FEGQTKT+LGN E+R +VD E L+ + E +P + +
Sbjct: 323 GEDIREGLTAVISVKVPEPQFEGQTKTKLGNSEIRSIVDSITGEGLSAFFEENPAIGKKV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KS+ A +A AA++AR+L R+KS L S+LPGKLADCS E E++IVEGDSAGGS
Sbjct: 383 IEKSIQASRAREAARKARELTRRKSALEVSALPGKLADCSWKEAELCEMYIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILNVE+ + N EI+ +I A+G G+ EDF E RYH
Sbjct: 443 AKQGRDRRFQAILPLRGKILNVEKARLDRILGNAEIRAMITAMGTGIS-EDFDIEKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIR LLLTFF+RY K L + +Y+ PPL+KV++GK + Y Y + E
Sbjct: 502 KLVIMTDADVDGAHIRILLLTFFFRYMKPLLENNYVYIAQPPLFKVKKGKDIHYVYSNEE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K++ + + IQR+KGLGEM QLWETT++P +R + Q+ +EDA +A+ +F+ L
Sbjct: 562 LAKLQDEIGRDRV-EIQRYKGLGEMNAEQLWETTMDPAKRTILQVTMEDAIKADELFTIL 620
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG V+ R+E IQ+ A V NLD
Sbjct: 621 MGDVVEPRREFIQDNAQYVRNLD 643
>gi|119355886|ref|YP_910530.1| DNA gyrase subunit B [Chlorobium phaeobacteroides DSM 266]
gi|119353235|gb|ABL64106.1| DNA gyrase subunit B [Chlorobium phaeobacteroides DSM 266]
Length = 643
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/503 (46%), Positives = 333/503 (66%), Gaps = 16/503 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++ RG P +V + D++GT+ F PD +F T +F + I R+RELAF
Sbjct: 147 YFQRFERGVP----QGNVREIGLSDQKGTKTTFKPDNLIFKTT-EFRKDIIIDRMRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L+I ++ D E + + GGL+E+V++ + ++ L + + F + D +
Sbjct: 202 LNKNLSITVQDADGAQEI-----FHYEGGLKEFVRFTDINRLSLIKEPIYFIGERDTTIV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y + + Y N+I T +GGTH+ G + +LTRTLN +K+ +K+ +SL+
Sbjct: 257 EIALQY-NDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNLYAQKNDLLKNLKLSLT 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +EGLT +ISV+V P+FEGQTKT+LGN E + +V+ V E L+E+ E +P+V+ I
Sbjct: 316 GDDFKEGLTAVISVKVEEPQFEGQTKTKLGNSETQSIVESIVNELLSEFAESNPNVIKMI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K A + AA++A++L R+KSVL SS LPGKLADCS PE E++IVEGDSAGGS
Sbjct: 376 IEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSINDPEHCELYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPL+GKILNVE+ M +NEEI+ +I ALG E+F E LRY
Sbjct: 436 AKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILALGTSFGEEEFSPEKLRYG 495
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFF+RY ++L + G +Y+ PPLY V+ GK QY +DD E
Sbjct: 496 KIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVYIAQPPLYLVKSGKDQQYAWDDEE 555
Query: 422 LKKVKSSF----PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+ + A IQR+KGLGEM P QLW TT++P R L Q+ +E+A EA+ +
Sbjct: 556 RNSITDTLKKMQKGKANIHIQRYKGLGEMNPEQLWSTTMDPAHRSLLQVSVENAREADQI 615
Query: 478 FSSLMGARVDTRKELIQNAANLV 500
FS+LMG +V+ R+E I+ A V
Sbjct: 616 FSTLMGDKVEPRREFIEKNARYV 638
>gi|422853984|ref|ZP_16900648.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK160]
gi|325696789|gb|EGD38677.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK160]
Length = 649
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/508 (46%), Positives = 338/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 149 HYQEYRRGHVVADLEI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 205 LNRGLRISITDKRDGME--QVKDYHYEGGIASYVQYINENKDVIFETPIYTDGEMDDITV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 263 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 322 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVARKI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P+E+E+FIVEGDSAGGS
Sbjct: 382 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPQETELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 442 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V +Y A
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVYIAQPPIYGVKVGSEVKEYIQPGA 560
Query: 421 ----ELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+ + + + +IQR+KGLGEM QLWETT+NPE R++ ++ + DAAEA+
Sbjct: 561 NQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVNDAAEAD 620
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 621 KIFDMLMGDRVEPRREFIEENAVYSTLD 648
>gi|110803693|ref|YP_697357.1| DNA gyrase subunit B [Clostridium perfringens SM101]
gi|110684194|gb|ABG87564.1| DNA gyrase, B subunit [Clostridium perfringens SM101]
Length = 638
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/507 (47%), Positives = 350/507 (69%), Gaps = 19/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG +T L + + GT++ F PD ++F ++D ++ R+RELAF
Sbjct: 144 WKQSYKRGAVLTGLE----KIGEAEGSGTKVHFKPDHEIFEET-EYDFEILSQRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I L E D K + Y + GG++ +V +LN +K+ LHD V G + DG
Sbjct: 199 LNKGINITLIDEREDEVKEEV--YHYEGGIKSFVSYLNRNKEVLHDEPIYVEGLK---DG 253
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I ++++LQ+ D +++ + +AN+I T++GGTH+ G K +LTR +N G++ +K+ D
Sbjct: 254 IAVEVSLQY-HDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDYGRRFGHLKESDK 312
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSG+ +REGLT ++SV++ P+FEGQTKT+LGN EVR VD E ++ +LE +P+V
Sbjct: 313 NLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRSAVDSISGEGISTFLEENPEVG 372
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K+L A +A AA+RAR+L R KSVL SSLPGKLADCSS P+E EI+IVEGDSA
Sbjct: 373 KIIIEKALLASRAREAARRARELTR-KSVLERSSLPGKLADCSSKDPKECEIYIVEGDSA 431
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR+FQAILPLRGKI+NVE++ + ++ I++++ A+G G+ G +F E +
Sbjct: 432 GGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIRSMVTAIGAGI-GPEFDIEKI 490
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RY++III+TDADVDGAHIRTLLLTFFYRY + L ++G +Y+ PPLYK+ +GKQ +Y Y
Sbjct: 491 RYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYIAQPPLYKISKGKQERYAYS 550
Query: 419 DAELKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
DA ++ F ++ ++QR+KGLGEM QLWETT++PE R+L + IEDA A+ +
Sbjct: 551 DAAADEIIEEFGGKDSSVNVQRYKGLGEMNAGQLWETTMDPESRILLRADIEDAMVADEI 610
Query: 478 FSSLMGARVDTRKELIQ-NAANLVNLD 503
F+ LMG +V+ R+E IQ NA N+ NLD
Sbjct: 611 FTILMGDKVEPRREFIQKNAKNVSNLD 637
>gi|262283011|ref|ZP_06060778.1| DNA gyrase subunit B [Streptococcus sp. 2_1_36FAA]
gi|262261263|gb|EEY79962.1| DNA gyrase subunit B [Streptococcus sp. 2_1_36FAA]
Length = 649
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/508 (46%), Positives = 342/508 (67%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y+RG+ V L + DR GT + F PD ++FT ++FD + RI+ELAF
Sbjct: 149 HFQEYTRGQVVADLKV----IGDTDRTGTTVHFTPDPEIFTETVEFDFEKLNKRIQELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L+I++ + E Q +Y + GG+ YVQ++N +K+ + D + +++ IT+
Sbjct: 205 LNRGLSISITDKRDGME--QSKDYHYEGGIASYVQYINENKEVIFDNPIYTDGEMEDITV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 263 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 322 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVAKKI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P E+E+FIVEGDSAGGS
Sbjct: 382 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNPAETELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 442 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDISKCRYQ 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V +Y A
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYIAQPPIYGVKVGSEVKEYIQPGA 560
Query: 421 E----LKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ L++ + + + SIQR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+
Sbjct: 561 DQEIKLQEALARYSEGRSKPSIQRYKGLGEMDDHQLWETTMDPEHRLMARVSVDDAAEAD 620
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 621 KIFDMLMGDRVEPRREFIEENAVYSTLD 648
>gi|169343479|ref|ZP_02864479.1| DNA gyrase, B subunit [Clostridium perfringens C str. JGS1495]
gi|422872596|ref|ZP_16919081.1| DNA gyrase subunit B [Clostridium perfringens F262]
gi|169298431|gb|EDS80520.1| DNA gyrase, B subunit [Clostridium perfringens C str. JGS1495]
gi|380306482|gb|EIA18746.1| DNA gyrase subunit B [Clostridium perfringens F262]
Length = 637
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/507 (47%), Positives = 350/507 (69%), Gaps = 19/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG +T L + + GT++ F PD ++F ++D ++ R+RELAF
Sbjct: 143 WKQSYKRGAVLTGLE----KIGEAEGSGTKVHFKPDHEIFEET-EYDFEILSQRLRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I L E D K + Y + GG++ +V +LN +K+ LHD V G + DG
Sbjct: 198 LNKGINITLIDEREDEVKEEV--YHYEGGIKSFVSYLNRNKEVLHDEPIYVEGLK---DG 252
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I ++++LQ+ D +++ + +AN+I T++GGTH+ G K +LTR +N G++ +K+ D
Sbjct: 253 IAVEVSLQY-HDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDYGRRFGHLKESDK 311
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSG+ +REGLT ++SV++ P+FEGQTKT+LGN EVR VD E ++ +LE +P+V
Sbjct: 312 NLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRSAVDSISGEGISTFLEENPEVG 371
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K+L A +A AA+RAR+L R KSVL SSLPGKLADCSS P+E EI+IVEGDSA
Sbjct: 372 KIIIEKALLASRAREAARRARELTR-KSVLERSSLPGKLADCSSKDPKECEIYIVEGDSA 430
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR+FQAILPLRGKI+NVE++ + ++ I++++ A+G G+ G +F E +
Sbjct: 431 GGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIRSMVTAIGAGI-GPEFDIEKI 489
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RY++III+TDADVDGAHIRTLLLTFFYRY + L ++G +Y+ PPLYK+ +GKQ +Y Y
Sbjct: 490 RYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYIAQPPLYKISKGKQERYAYS 549
Query: 419 DAELKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
DA ++ F ++ ++QR+KGLGEM QLWETT++PE R+L + IEDA A+ +
Sbjct: 550 DAAADEIIEEFGGKDSSVNVQRYKGLGEMNAGQLWETTMDPESRILLRADIEDAMVADEI 609
Query: 478 FSSLMGARVDTRKELIQ-NAANLVNLD 503
F+ LMG +V+ R+E IQ NA N+ NLD
Sbjct: 610 FTILMGDKVEPRREFIQKNAKNVSNLD 636
>gi|338731010|ref|YP_004660402.1| DNA gyrase subunit B [Thermotoga thermarum DSM 5069]
gi|335365361|gb|AEH51306.1| DNA gyrase subunit B [Thermotoga thermarum DSM 5069]
Length = 630
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 237/506 (46%), Positives = 336/506 (66%), Gaps = 15/506 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q YSRGKP+ C V V +++GT +RF PD ++F+T ++FD + I ++RELA+
Sbjct: 139 YYQAYSRGKPL----CEVTVVGKTNKRGTIVRFKPDPEIFST-VEFDPDIIQTKLRELAY 193
Query: 63 LNPKLTIALRKEDSDPEKNQYNE-YFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
LN L I + + N Y E Y + GG+ EYV++L ++K LH+V+ + + + +
Sbjct: 194 LNVGLKIIF-----EDKINGYTEVYQYKGGISEYVRYLAGNRKMLHEVIRISGEWEDVKV 248
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D+A+ + D + YAN+IRT+D GTH+ K ++T+ N K +K KD S
Sbjct: 249 DVAMVYTDSQEQDLIYSYANTIRTVDHGTHVTAFKNAITKLFNEYAKSLGILK-KDESFQ 307
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGL ++SV + NPEFEGQTK +LG+ V + V+E LTEY E++ L I
Sbjct: 308 GEDVREGLIAVVSVLLKNPEFEGQTKAKLGSEIAGVAVSKVVREKLTEYFEINKATLKII 367
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L + A++A AAK+ARDLVR+K+ L +S+LPGKLADC ST E+SE+FIVEGDSAGGS
Sbjct: 368 LERIAQAMRAREAAKKARDLVRRKNALENSALPGKLADCVSTDLEKSELFIVEGDSAGGS 427
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQ RDR FQA+LP+RGKILNVE+ + NE+I+++I A+G G+ G+ F + LRY
Sbjct: 428 AKQARDREFQAVLPIRGKILNVEKSSIHKLLNNEQIKDIIVAIGTGI-GDKFDRSRLRYG 486
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDAD+DGAHIRTLLLTFF+RY + L +EG +++ VPPLYKV ++ Y Y + E
Sbjct: 487 KIIIMTDADIDGAHIRTLLLTFFFRYMRPLIEEGRVFIAVPPLYKVSVNGKIYYLYSEEE 546
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
+K KS +QR+KGLGEM P QLWETT+NP+ R + ++ IEDA EA+ +F+ L
Sbjct: 547 YEKFKSQLKEGTKIEVQRYKGLGEMNPEQLWETTMNPQTRKMIKVTIEDAEEADTLFNIL 606
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG R+ I+ A + + +LD+
Sbjct: 607 MGENTAERRSFIERHA--LKVTYLDV 630
>gi|339443689|ref|YP_004709693.1| hypothetical protein EGYY_00050 [Eggerthella sp. YY7918]
gi|338903441|dbj|BAK43292.1| hypothetical protein EGYY_00050 [Eggerthella sp. YY7918]
Length = 647
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 240/513 (46%), Positives = 332/513 (64%), Gaps = 14/513 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY + GK LT + GT+ FWPD ++FT +D++T+A R RE+A
Sbjct: 142 EYKITFDHGKTKEKLT----KIGPAKGTGTKTTFWPDPEIFTETTVYDYDTLANRFREMA 197
Query: 62 FLNPKLTIALRKED-SDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGI 119
FLN L I L +D E E F +AGG+ ++V++LN K+ L+ + F +
Sbjct: 198 FLNKGLKITLHDARVTDEEGKPRTEVFQYAGGIVDFVKFLNEGKETLNKPIYFEAENADG 257
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
T+++A+QW + +++++ +AN+I T +GGTH++G K ++TR++N + +K+KD +
Sbjct: 258 TVEVAMQWSTSYSTNSVMAFANNINTHEGGTHLDGFKQAVTRSINEYARAKGILKEKDSN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSG+ REGL I+SV++ +P+FEGQTKT+LGN E+R +V +V + L+EYLE +P
Sbjct: 318 LSGDDTREGLAAIVSVKLHDPQFEGQTKTKLGNTEIRPLVQNAVTQGLSEYLEENPSPAK 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K+ ALKA AA++AR++ R+K VL S +LPGKLADCSS PE SEIFIVEGDSAG
Sbjct: 378 RIIGKATQALKAREAARKAREMTRRKGVLDSFALPGKLADCSSKEPENSEIFIVEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQ RDR+ QAILPLRGKILNVER ++ I +LI A+G + G+DF + R
Sbjct: 438 GSAKQARDRKTQAILPLRGKILNVERAGLHRSLSSDTISSLITAIGTNI-GDDFDADQAR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLY----KVERGKQVQ- 414
YH+III+TDADVDGAHIR LLLTFFYRY L + G IY+ PP++ K R +++
Sbjct: 497 YHRIIIMTDADVDGAHIRCLLLTFFYRYMPELINRGYIYIAQPPIFGLKKKNSRSPKIER 556
Query: 415 YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
Y YD+ L + + + +QR+KGLGEM P QLWETT+ P R L Q+ I+DAAEA
Sbjct: 557 YIYDENALSSTLAEYDDPNKFDVQRYKGLGEMDPDQLWETTMEPATRTLLQVNIDDAAEA 616
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
V S LMG V+ RKE IQ A V LDI
Sbjct: 617 ERVVSELMGDLVEPRKEFIQKHARDVRF--LDI 647
>gi|357637398|ref|ZP_09135273.1| DNA gyrase, B subunit [Streptococcus macacae NCTC 11558]
gi|357585852|gb|EHJ53055.1| DNA gyrase, B subunit [Streptococcus macacae NCTC 11558]
Length = 650
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/508 (45%), Positives = 338/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG V L +D D GT + F PD +FT I+FD + +A RI+ELAF
Sbjct: 150 YFQEYRRGVVVNDLKV----IDETDITGTTVHFTPDPDIFTETIEFDFDKLAKRIQELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L I++ + D E+N+ EY + GG+ YV ++N +K+ + + + +++GI +
Sbjct: 206 LNKGLKISITDKRKDKEQNK--EYHYEGGIVSYVDFINENKEVIFENPIYTDGELEGIAV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y + ++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ D +LS
Sbjct: 264 EVAMQYTT-GYHEIIMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENDDNLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E L +L +P + I
Sbjct: 323 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEALNRFLLENPPIAKKI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P ++E+FIVEGDSAGGS
Sbjct: 383 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPIQNELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RYH
Sbjct: 443 AKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFNVAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ----VQYCY 417
K+II+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y ++ G + +Q
Sbjct: 502 KLIIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGIKLGSEIKEYIQPGN 561
Query: 418 DDAEL--KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
D E+ + ++ + ++QR+KGLGEM QLWETT+NP R++ ++ ++DAAEA+
Sbjct: 562 DQEEVLQEAIQRYSQGRSKPTVQRYKGLGEMDDHQLWETTMNPANRLMAKVSVDDAAEAD 621
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 622 KIFDMLMGDRVEPRREFIEANAVYSTLD 649
>gi|226309593|ref|YP_002769487.1| DNA gyrase subunit B [Brevibacillus brevis NBRC 100599]
gi|226092541|dbj|BAH40983.1| DNA gyrase subunit B [Brevibacillus brevis NBRC 100599]
Length = 641
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/503 (46%), Positives = 338/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ ++ G P L V + GT++ F PD +FT F++ + RIRELAF
Sbjct: 146 YYMRFKVGAPDADLAV----VGETEETGTKVTFKPDPTIFTETTVFEYEILQKRIRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN L I L+ D+ P+ + + + GG+ ++V++LN +++ LHD V+ + +G+ +
Sbjct: 202 LNKGLRITLK--DTRPDHEKEESFHYEGGIIQFVEYLNKNREALHDDVIYCEGEKEGLVV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D Y + +AN+I T +GGTH G K +LTR +N +K +K+KD +LS
Sbjct: 260 EVALQY-NDTYVSNIYSFANNINTHEGGTHETGFKTALTRVINDYSRKFNFLKEKDPNLS 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREG+T IISV++ P+FEGQTKT+LGN E R + + + ++E +P V +
Sbjct: 319 GDDVREGITAIISVKIQEPQFEGQTKTKLGNSEARSITESVFGDRFNTFMEENPGVAKKV 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AA++AR++ R+KS L S+LPGKLADCSS ESE+FIVEGDSAGGS
Sbjct: 379 VEKALMASRAREAARKAREMTRRKSALEVSALPGKLADCSSKDASESELFIVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILPLRGK+LNVE+ + N EI+ +I ALG GV GEDF RYH
Sbjct: 439 AKMGRDRHFQAILPLRGKVLNVEKARLDKILGNNEIRAIITALGTGV-GEDFDITKARYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDG+HIRTLLLTFF+RY K L + G IY+ PPLY +++GK + Y Y+D +
Sbjct: 498 KVVIMTDADVDGSHIRTLLLTFFFRYMKQLIEAGYIYIAQPPLYSIKQGKTLHYAYNDKQ 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
+V ++ + ++QR+KGLGEM QLWETT++PE R L Q+ +EDA +A++VF +L
Sbjct: 558 RDEVLATLKAQPKPNVQRYKGLGEMNADQLWETTMDPEVRTLLQVDLEDAMDADMVFETL 617
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG V+ R+E I Q AAN+ +LD
Sbjct: 618 MGDEVEPRREFIEQYAANVRDLD 640
>gi|326486754|gb|ADZ76420.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
Length = 588
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/484 (47%), Positives = 325/484 (67%), Gaps = 9/484 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q Y RG PV L + D+ GT F PD ++F +D++ ++ R+RELAF
Sbjct: 113 HYQAYERGVPVADLEV----IGDTDKTGTITHFVPDPEIFKETTVYDYDLLSNRVRELAF 168
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 169 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVIHEEPIYIEGEKDGITV 226
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N ++ K+ D +LS
Sbjct: 227 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLS 285
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D L +L +PD I
Sbjct: 286 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLLENPDSARKI 345
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 346 VEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 405
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 406 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 464
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D +
Sbjct: 465 KVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRVEYAYNDKQ 524
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ P + +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 525 LDELLKELPQSPKPGLQRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEML 584
Query: 482 MGAR 485
MG +
Sbjct: 585 MGDK 588
>gi|406667899|ref|ZP_11075650.1| DNA gyrase subunit B [Bacillus isronensis B3W22]
gi|405384306|gb|EKB43754.1| DNA gyrase subunit B [Bacillus isronensis B3W22]
Length = 641
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/501 (46%), Positives = 333/501 (66%), Gaps = 10/501 (1%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
+ RG V LT + D GT RF D ++F ++++ +A RIRELA+LN
Sbjct: 151 FERGHTVQQLTV----IGETDHTGTTTRFKADSEIFKETTVYEYDILATRIRELAYLNRG 206
Query: 67 LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQ 126
+++ + E + E+++ + F GG+ EYV+ +N +K+ +H + + +GIT+++A+Q
Sbjct: 207 ISLTIADERTGQERSE--TFHFEGGIREYVEHINENKEAIHAPIDVLGEKEGITVEIAMQ 264
Query: 127 WCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVR 186
+ + +S ++ +AN+I T +GGTH G K +LTR +N +KS +K+ D +L+GE VR
Sbjct: 265 YNA-GFSSNIMSFANNINTYEGGTHESGFKTALTRVINDYARKSNLIKESDANLTGEDVR 323
Query: 187 EGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSL 246
EGLT I+S++ P P+FEGQTKT+LGN EV ++ + + +L +P V ++ K
Sbjct: 324 EGLTAIVSIKHPEPQFEGQTKTKLGNSEVSQITNALFSDGFERFLLENPSVARQVIEKGT 383
Query: 247 SALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGR 306
A +A +AAK+AR+ R+KS L SSLPGKLADCSST P ESEI+IVEGDSAGGSAK GR
Sbjct: 384 MAARARVAAKKAREFTRRKSALEVSSLPGKLADCSSTNPAESEIYIVEGDSAGGSAKSGR 443
Query: 307 DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIIL 366
DR FQAILPLRGKILNVE+ + N EI+ +I A G G+ GE+F E RYHKI+I+
Sbjct: 444 DRHFQAILPLRGKILNVEKARLDRILSNAEIRAMITAFGTGI-GEEFNLEKARYHKIVIM 502
Query: 367 TDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVK 426
TDADVDGAHIR LLLTFF+R+ + L + G +Y PPLY+V++GK V+YCY D EL+ +
Sbjct: 503 TDADVDGAHIRVLLLTFFFRFMRPLIEAGYVYAAKPPLYQVKQGKHVEYCYSDQELEDIL 562
Query: 427 SSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARV 486
+ P ++QR+KGLGEM QLW+TT++PE R L ++ ++DA EA+ +F LMG V
Sbjct: 563 NRLPKLPKPNVQRYKGLGEMNATQLWDTTMDPEHRTLIRVELDDAIEADKIFDHLMGDEV 622
Query: 487 DTRKELIQNAANLVNLDHLDI 507
R++ I+ N V + LDI
Sbjct: 623 APRRDFIEE--NAVYVQDLDI 641
>gi|303229212|ref|ZP_07316011.1| DNA gyrase, B subunit [Veillonella atypica ACS-134-V-Col7a]
gi|429759307|ref|ZP_19291808.1| DNA gyrase, B subunit [Veillonella atypica KON]
gi|302516122|gb|EFL58065.1| DNA gyrase, B subunit [Veillonella atypica ACS-134-V-Col7a]
gi|429179898|gb|EKY21132.1| DNA gyrase, B subunit [Veillonella atypica KON]
Length = 633
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 241/499 (48%), Positives = 339/499 (67%), Gaps = 12/499 (2%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
++RG T + + + GT + F PD ++F T + F+ +T+ R++ELAFLN
Sbjct: 144 FARGHK----TSELHEIGKAEGTGTTVIFKPDSEIFETTV-FNFDTLKIRLQELAFLNKG 198
Query: 67 LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLAL 125
L I L D E+ + + + GGL ++ +LN +K+ ++ V+ D + +D+AL
Sbjct: 199 LRITL--SDLRQEEPRIESFHYEGGLSSFITFLNENKEVVNPTVIDIENTKDDVVVDVAL 256
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
Q+ +D+YS+ +L + N+I T+DGGTH+ G +A+LTRTLN G+KS +K+ + +LSGE V
Sbjct: 257 QY-NDSYSENLLSFVNNINTVDGGTHLSGFRAALTRTLNDYGRKSGLIKENESNLSGEDV 315
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 245
REGLT ++SV+V P+FEGQTKT+LGN EV+ + D V E L + E HP I+ K+
Sbjct: 316 REGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVSEGLKTFFEEHPQDAKKIIEKA 375
Query: 246 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 305
A +A AA++ARDL R+K+ L SSLPGKLADCS +EI++VEGDSAGGSAKQG
Sbjct: 376 TMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSMTEIYLVEGDSAGGSAKQG 435
Query: 306 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 365
RDRR+QAILPLRGKILNVE+ + N EI+++I A G G+ G++F RY+KIII
Sbjct: 436 RDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTGI-GDEFDITKSRYNKIII 494
Query: 366 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 425
+TDADVDGAHIRTLLLTFFYRY K L +EG IY+ PPLY++++GK Y Y DAEL
Sbjct: 495 MTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQIKKGKSHWYVYSDAELTAK 554
Query: 426 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 485
+ + +IQR+KGLGEM P QLWETT+NPE R + Q+ +ED+ EA+ +F+ LMG +
Sbjct: 555 LDEVGRDGI-TIQRYKGLGEMNPEQLWETTMNPENRTILQVSLEDSIEADKIFTVLMGDK 613
Query: 486 VDTRKELIQNAANLV-NLD 503
V+ R++ I++ A V NLD
Sbjct: 614 VEPRRKFIEDNAKYVRNLD 632
>gi|160914817|ref|ZP_02077031.1| hypothetical protein EUBDOL_00824 [Eubacterium dolichum DSM 3991]
gi|158433357|gb|EDP11646.1| DNA gyrase, B subunit [Eubacterium dolichum DSM 3991]
Length = 648
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/495 (46%), Positives = 335/495 (67%), Gaps = 12/495 (2%)
Query: 10 GKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTI 69
GKP L + D+ G+ +RF D +FT + +T+ RIR+LAFLN + +
Sbjct: 164 GKPSGALKV----IGDTDKHGSVVRFKADASIFTETQVYSFDTLNTRIRQLAFLNKGIRL 219
Query: 70 ALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLALQWC 128
+ D E+ + EY + GG+ +YV++LN +K LH DV+ +GI ++ALQ+
Sbjct: 220 VII--DEREEEAKRIEYKYDGGIRQYVEYLNKNKNVLHEDVIYVEGLEEGILAEVALQY- 276
Query: 129 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREG 188
+D Y + + N+I T++GGTH +G + +LTR +N+ +++ +K KD +L+G+ VREG
Sbjct: 277 NDGYMPNIYSFCNNINTMEGGTHEDGFRLALTRVINAYARENNLIK-KDETLAGDDVREG 335
Query: 189 LTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSA 248
LT IISV+ P+P++EGQTKT+LGN EVRK+V + + L +L +P I+ K + A
Sbjct: 336 LTAIISVKHPDPQYEGQTKTKLGNSEVRKIVSGILGDQLERFLIENPTTAKIIVEKGVLA 395
Query: 249 LKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDR 308
KA +AAK+AR+L R+KS L +SLPGKLADCSS E EI+IVEGDSAGGSAKQGR+
Sbjct: 396 SKARMAAKKARELTRRKSALEITSLPGKLADCSSKDASECEIYIVEGDSAGGSAKQGRNS 455
Query: 309 RFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTD 368
+FQAILPLRGKILNVE+ +++N EI++++ A G G+ G++ LRYHKI+I+TD
Sbjct: 456 KFQAILPLRGKILNVEKARLHRIFENNEIRSMVTAFGCGI-GDEIDISKLRYHKIVIMTD 514
Query: 369 ADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSS 428
ADVDGAHI TL+LTFFYR+ + + + G +Y+ +PPL+KV +G +V+Y Y + E+++V++
Sbjct: 515 ADVDGAHICTLMLTFFYRFLRPVIEGGYVYIAMPPLFKVAKGNRVEYVYKEEEMERVRAE 574
Query: 429 FPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDT 488
N ++QR+KGLGEM P QLWETT++P R LKQ+ IEDA EA+ +F LMG V+
Sbjct: 575 MGENV--NVQRYKGLGEMNPEQLWETTMDPAFRTLKQVNIEDAVEADAIFEMLMGEEVEP 632
Query: 489 RKELIQNAANLVNLD 503
R+E IQ A LD
Sbjct: 633 RREFIQENAKYATLD 647
>gi|288574018|ref|ZP_06392375.1| DNA gyrase, B subunit [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288569759|gb|EFC91316.1| DNA gyrase, B subunit [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 637
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 241/507 (47%), Positives = 342/507 (67%), Gaps = 21/507 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ +G PVT L D+ GT + F PD ++F + F + R+RE+AF
Sbjct: 145 WGQRFEKGIPVTDLEGGY----ETDKSGTTVHFMPDDEIFE-EVCFSAEILGNRLREMAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
L P L I L D E+ ++ + + GGL +V++LN DK L V G R D
Sbjct: 200 LIPGLKITLI---DDREEKEWT-FHYEGGLASFVEYLNRDKSSLFPKPIVVSGER---DS 252
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++ LQ+ +D Y + + +AN I T++GGTH+ G+++++TR +N +++K +KDKD
Sbjct: 253 IFVEVGLQY-NDGYHERLFSFANLIHTMEGGTHVIGLRSAITRAINESARRNKVLKDKDA 311
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSGE ++EGLTC+ISV++ +P+FEGQTKT+LGN EV+ +VD V E L L+ P VL
Sbjct: 312 NLSGEDLKEGLTCVISVKLGDPQFEGQTKTKLGNSEVKGIVDSIVYEGLLVALDEDPSVL 371
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
++ K++ A +A AAK+AR+LVR K+ + +LPGKLADCS PE E++IVEGDSA
Sbjct: 372 KPVVDKAVKARQAREAAKKARELVR-KTAMTGLNLPGKLADCSGRIPENCEVYIVEGDSA 430
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILPLRGKILNVE+ + ++EI+ +I+ALG G+ GEDF L
Sbjct: 431 GGSAKQGRDRAFQAILPLRGKILNVEKARLDRILSSKEIRTIIQALGCGI-GEDFDTTKL 489
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHKIII+TDADVDGAHI TLLLTFFYRY K L + G IY+ PPLY+V+ G+ +Y +
Sbjct: 490 RYHKIIIMTDADVDGAHISTLLLTFFYRYMKELVEGGYIYLAQPPLYRVQIGRHSEYIFS 549
Query: 419 DAELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
D +L+ +S + +QR+KGLGEM P QLWETT++PE R++K++ ++DA A+
Sbjct: 550 DKDLRTFMNSHKDTGKKIGVQRYKGLGEMNPEQLWETTMDPENRVMKRIEVDDALAADEY 609
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
FS LMG +V+ R+E IQ ++ V NLD
Sbjct: 610 FSILMGDKVEPRREFIQAHSHEVQNLD 636
>gi|340751288|ref|ZP_08688109.1| DNA gyrase, B subunit [Fusobacterium mortiferum ATCC 9817]
gi|229421601|gb|EEO36648.1| DNA gyrase, B subunit [Fusobacterium mortiferum ATCC 9817]
Length = 635
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 238/504 (47%), Positives = 335/504 (66%), Gaps = 12/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY+RG P V + + GT +RF D ++F T + +D+NT+ R++ELA+
Sbjct: 140 WYQKYNRGIPEEA----VKEIGITEEHGTTVRFKADHEIFETLV-YDYNTLKNRLKELAY 194
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD-KKPLHDVVGFRKDVDGITI 121
LN L I L +P K + E F GG+ ++++ + D +K + + + +VD I +
Sbjct: 195 LNKGLVITLTDSRKEPFKKEIFE--FEGGIADFLREITEDTEKLIKEPIYMTGEVDNIGV 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A + + S+ + + N+I T +GGTH++G + +LTR +N +GK +KDKD L
Sbjct: 253 EIAFLYTVNQ-SEIIYSFVNNINTHEGGTHVQGFRTALTRIINDVGKAQGLLKDKDGKLQ 311
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G +REG+T I+SV+VP P+FEGQTKT+LGN EV +V V L LE +P+ I
Sbjct: 312 GTDIREGVTAIVSVKVPQPQFEGQTKTKLGNSEVTGIVSTVVGGQLKMILEDNPNDTKVI 371
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L++ KA AA+RAR+LV +KS L SLPGKLADCSS PEE EI+IVEGDSAGGS
Sbjct: 372 IEKILNSKKAREAAQRARELVLRKSALEVGSLPGKLADCSSKNPEECEIYIVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR QAILPLRGKILNVE+ +N E++ +I A G G+ G++F E LRY
Sbjct: 432 AKQGRDRYHQAILPLRGKILNVEKAGLHKALENNEVRAMITAFGTGI-GDNFNIEKLRYG 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KII++TDADVDGAHIRTLLLTF YRY L G +++ PPLYK+ GKQ++Y Y D E
Sbjct: 491 KIILMTDADVDGAHIRTLLLTFIYRYMIELIYNGNVFIAQPPLYKISYGKQIKYAYSDRE 550
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
LK++ +F + Y++QR+KGLGEM P QLWETT++P+ R L ++ I+DA A+++F
Sbjct: 551 LKEITEAFEGEDKKYTLQRYKGLGEMNPEQLWETTMDPQNRTLLKVTIDDARAADMLFDK 610
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG +VD R+E I +NA + NLD
Sbjct: 611 LMGDKVDPRREFIEENAEYVKNLD 634
>gi|335031676|ref|ZP_08525101.1| DNA gyrase, B subunit [Streptococcus anginosus SK52 = DSM 20563]
gi|333768955|gb|EGL46110.1| DNA gyrase, B subunit [Streptococcus anginosus SK52 = DSM 20563]
Length = 648
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 236/508 (46%), Positives = 336/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 148 YFQEYRRGHVVADLEI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 204 LNRGLRISITDKREGLE--QTKDYHYEGGIASYVQYINENKDVIFENPIYTDGEMDDITV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 262 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 321 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVAKKI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P E+E+FIVEGDSAGGS
Sbjct: 381 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPHETELFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 441 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V +Y A
Sbjct: 500 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYIAQPPIYGVKVGSEVKEYIQPGA 559
Query: 421 ----ELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+ + + SIQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 560 NQEEELQLALERYSEGRSKPSIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 619
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 620 KIFDMLMGDRVEPRREFIEENAVYSTLD 647
>gi|402833234|ref|ZP_10881854.1| DNA gyrase, B subunit [Selenomonas sp. CM52]
gi|402281226|gb|EJU29917.1| DNA gyrase, B subunit [Selenomonas sp. CM52]
Length = 690
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 240/501 (47%), Positives = 339/501 (67%), Gaps = 15/501 (2%)
Query: 6 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 65
++ +G LT + ++ GT++ F PD ++FT Q+ +T+ R+RELAFLN
Sbjct: 201 RFEQGVTAAPLTV----IGETEKTGTKVHFVPDPEIFTVT-QYSFDTLKHRLRELAFLNQ 255
Query: 66 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITIDLA 124
+TI L + + + Y F+ GG+ +V+ LN K+ +H + F D +++A
Sbjct: 256 GITIRLMDKRGEGREESY---FYEGGIRSFVEHLNRKKEVIHPTPIYFNGIKDDTVVEIA 312
Query: 125 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 184
+Q+ +D+Y + + + N+I T +GGTH+ G K +LTR N +K +KDKD +LSGE
Sbjct: 313 MQY-NDSYMENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARKQGILKDKDGNLSGED 371
Query: 185 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 244
VREGLTC+IS+++ P+FEGQTKT+LGN EVR +VD V E LTEY E +P + ++ K
Sbjct: 372 VREGLTCVISLKIHEPQFEGQTKTKLGNSEVRGIVDSIVTEGLTEYFEENPAITKKVIEK 431
Query: 245 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 304
++ A +A AA++AR+L R+K+ L SSLPGKLADCS PE++EI++VEGDSAGGSAKQ
Sbjct: 432 AIMASRAREAARKARELTRRKNALEVSSLPGKLADCSIKDPEQAEIYLVEGDSAGGSAKQ 491
Query: 305 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 364
GRDRRFQAILPLRGKILNVE+ ++ N EI+ +I A G G+ +DF RY KII
Sbjct: 492 GRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGIS-DDFDIAKRRYGKII 550
Query: 365 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL-K 423
I+TDADVDG+HIRTLLLTFFYRY K L + G +Y+ PPLY++ +GK+ Y Y D EL +
Sbjct: 551 IMTDADVDGSHIRTLLLTFFYRYMKPLIERGHVYIAQPPLYQIRKGKKHWYTYSDDELAQ 610
Query: 424 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 483
K+ NA ++QR+KGLGEM P QLWETT++PE R + Q+ +EDA EA+ +F+ LMG
Sbjct: 611 KLNEVGRDNA--TVQRYKGLGEMNPEQLWETTMDPEGRTMLQVRMEDAEEADELFTILMG 668
Query: 484 ARVDTRKELIQNAANLV-NLD 503
+V+ R++ I+ A V NLD
Sbjct: 669 DKVEPRRQFIEEHAKHVRNLD 689
>gi|448385291|ref|ZP_21563797.1| DNA gyrase subunit B [Haloterrigena thermotolerans DSM 11522]
gi|445656786|gb|ELZ09618.1| DNA gyrase subunit B [Haloterrigena thermotolerans DSM 11522]
Length = 643
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/498 (45%), Positives = 336/498 (67%), Gaps = 7/498 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ + G+PV + V ++ + GT+I+FWPD +F T + +T++ R+RELAF
Sbjct: 142 FRHAFEGGEPVGDME-RVRDMEPDEETGTQIQFWPDTGIFETG-EMSFSTLSNRLRELAF 199
Query: 63 LNPKLTIALR--KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGI 119
LN + I LR +E++D Y + GG+ E+V++LN + +H DV+ F + I
Sbjct: 200 LNSGVRITLRDEREETDDGDVVTETYEYDGGIREFVEYLNETRSAMHEDVIYFEDEEQSI 259
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I++A+Q ++ ++ +AN+I T +GGTH+ G K +LTR +N ++ + D D +
Sbjct: 260 QIEVAMQ-ATEELQGSIHAFANNINTREGGTHLTGFKTALTRCVNDYANENDLLSDLDNN 318
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE +REGLT +IS++ P+P+FEGQTKT+LGN EVR +V+ ++ E L Y E HPD +
Sbjct: 319 LTGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIVESAMHEGLGTYFEEHPDTAE 378
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
SI++K++ A KA +AA++A +L R+KS L S+SLPGKLADC + PEE+E+FI EGDSAG
Sbjct: 379 SIVNKAVEAAKARMAAQKAEELTRRKSALESTSLPGKLADCQTKDPEEAELFIAEGDSAG 438
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQ R+ FQAILP++GKILNVE+ + +N+EI+N+I A+G G+ G++F E +R
Sbjct: 439 GSAKQARNPDFQAILPIKGKILNVEKHRLDRILENDEIRNMITAIGAGI-GDEFDIEDVR 497
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
Y KII+ TDADVDGAHIRTLLLTFFYR+ + L + G +Y PPLY++ + +
Sbjct: 498 YKKIIMATDADVDGAHIRTLLLTFFYRHMRPLLEGGYVYATQPPLYRIRYRGETYDAMTE 557
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
AE ++ + +QRFKGLGEM P QLW+TT++P+ R+LKQ+ IEDAA A+ +FS
Sbjct: 558 AERDEIVAEKCDGNPSQVQRFKGLGEMNPQQLWDTTMDPDNRILKQITIEDAAAADKMFS 617
Query: 480 SLMGARVDTRKELIQNAA 497
LMG V+ RK+ I+ A
Sbjct: 618 VLMGDAVEPRKQFIKENA 635
>gi|393198827|ref|YP_006460669.1| type IIA topoisomerase, B subunit [Solibacillus silvestris StLB046]
gi|327438158|dbj|BAK14523.1| type IIA topoisomerase, B subunit [Solibacillus silvestris StLB046]
Length = 641
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/501 (46%), Positives = 333/501 (66%), Gaps = 10/501 (1%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
+ RG V LT + D GT RF D ++F ++++ +A RIRELA+LN
Sbjct: 151 FERGHTVQQLTV----IGETDHTGTTTRFKADSEIFKETTVYEYDILATRIRELAYLNRG 206
Query: 67 LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQ 126
+++ + E + E+++ + F GG+ EYV+ +N +K+ +H + + +GIT+++A+Q
Sbjct: 207 ISLTIADERTGQERSE--TFHFEGGIREYVEHINENKEAIHAPIDVLGEKEGITVEIAMQ 264
Query: 127 WCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVR 186
+ + +S ++ +AN+I T +GGTH G K +LTR +N +KS +K+ D +L+GE VR
Sbjct: 265 YNA-GFSSNIMSFANNINTYEGGTHESGFKTALTRVINDYARKSNLIKESDANLTGEDVR 323
Query: 187 EGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSL 246
EGLT I+S++ P P+FEGQTKT+LGN EV ++ + + +L +P V ++ K
Sbjct: 324 EGLTAIVSIKHPEPQFEGQTKTKLGNSEVSQITNALFSDGFERFLLENPSVARQVIEKGT 383
Query: 247 SALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGR 306
A +A +AAK+AR+ R+KS L SSLPGKLADCSST P ESEI+IVEGDSAGGSAK GR
Sbjct: 384 MAARARVAAKKAREFTRRKSALEVSSLPGKLADCSSTNPAESEIYIVEGDSAGGSAKSGR 443
Query: 307 DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIIL 366
DR FQAILPLRGKILNVE+ + N EI+ +I A G G+ GE+F E RYHKI+I+
Sbjct: 444 DRHFQAILPLRGKILNVEKARLDRILSNAEIRAMITAFGTGI-GEEFNLEKARYHKIVIM 502
Query: 367 TDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVK 426
TDADVDGAHIR LLLTFF+R+ + L + G +Y PPLY+V++GK V+YCY D EL+ +
Sbjct: 503 TDADVDGAHIRVLLLTFFFRFMRPLIEAGYVYAAKPPLYQVKQGKHVEYCYSDQELEDIL 562
Query: 427 SSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARV 486
+ P ++QR+KGLGEM QLW+TT++PE R L ++ ++DA EA+ +F LMG V
Sbjct: 563 NRLPKLPKPNVQRYKGLGEMNATQLWDTTMDPEHRTLIRVELDDAIEADKIFDHLMGDEV 622
Query: 487 DTRKELIQNAANLVNLDHLDI 507
R++ I+ N V + LDI
Sbjct: 623 APRRDFIEE--NAVYVQDLDI 641
>gi|288925541|ref|ZP_06419474.1| DNA gyrase, B subunit [Prevotella buccae D17]
gi|315606674|ref|ZP_07881685.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella buccae
ATCC 33574]
gi|402307320|ref|ZP_10826346.1| DNA gyrase, B subunit [Prevotella sp. MSX73]
gi|288337757|gb|EFC76110.1| DNA gyrase, B subunit [Prevotella buccae D17]
gi|315251684|gb|EFU31662.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella buccae
ATCC 33574]
gi|400378834|gb|EJP31685.1| DNA gyrase, B subunit [Prevotella sp. MSX73]
Length = 656
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/517 (46%), Positives = 340/517 (65%), Gaps = 23/517 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + V DRQGTR +FWPD VFTT + + + IA R+RELAF
Sbjct: 146 YQQEYEKGKPLYPVKV----VGETDRQGTRQQFWPDPTVFTTTV-YKWDIIASRMRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
LN + I LR D E E F A GL+E+V++++ + L D V+ + + G+
Sbjct: 201 LNAGIRITLRDLRPDEEGKTREEVFHAEQGLKEFVRYVDRHRTHLFDDVIYLKTEKQGVP 260
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKDK 176
I++A+ + +D YS+ + Y N+I TI+GGTH+ G +A+LTR L + SK ++
Sbjct: 261 IEVAIMYNTD-YSENIHSYVNNINTIEGGTHLTGFRAALTRVLKAYADNDAQISKQIEKA 319
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
I ++GE REGLT +IS++V P+FEGQTKT+LGN EV V Q+V E L YLE HP
Sbjct: 320 KIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVAGAVQQAVGEALNNYLEEHPV 379
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
I K + A A +AA++AR+ V++KSV+ LPGKLADCS+ P++ EIF+VEGD
Sbjct: 380 EAKKICEKVVLAATARIAARKARESVQRKSVMSGGGLPGKLADCSNKDPKDCEIFLVEGD 439
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFK 354
SAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV+GED +
Sbjct: 440 SAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAESVMNIIQSIGVRFGVEGEDDR 499
Query: 355 K---EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK 411
+ + LRY KIII+TDADVDG+HI TL++T FYR+ + +EG +Y+ PPLYK K
Sbjct: 500 EANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPKVIEEGHLYIATPPLYKCTYKK 559
Query: 412 QVQYCYDDAEL-----KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQL 466
+YCY + + K V+ AL++ QR+KGLGEM P QLWETT++P R+LKQ+
Sbjct: 560 ASEYCYTEQQRQAFIDKYVEGREDDKALHT-QRYKGLGEMNPEQLWETTMDPATRLLKQV 618
Query: 467 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
I++AAEA+ +FS LMG V+ R+E I+ A N+D
Sbjct: 619 NIQNAAEADEIFSMLMGDDVEPRREFIEKNATYANID 655
>gi|78707357|gb|ABB46484.1| DNA gyrase subunit B [Acholeplasma laidlawii]
Length = 631
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 241/503 (47%), Positives = 327/503 (65%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QKY RG P L S D+ GT I F D +FT + +++ T+ RI++LAF
Sbjct: 140 YEQKYERGIPAYDLKVK----GSTDKSGTIISFQADPLIFTETVIYNYETLRTRIQQLAF 195
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L + L D E+N+ + + GG+ EYV++LN K +H D++ K+ DGIT+
Sbjct: 196 LNKGLKLNLI--DDRFEENKSESFHYEGGITEYVKFLNQSKSKIHNDIIYIDKEQDGITV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+LA+Q+ D+YS + + N+I T +GG H +G K +LTR ++ K KD S+S
Sbjct: 254 ELAMQFV-DSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYADDLKMKKDD--SIS 310
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT IISV+ P P+FEGQTKT+LGNPEVR + Q E + +L +P +I
Sbjct: 311 GEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEAIERFLMENPAQAKAI 370
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AA++A+DL R+KS L + KLADC S PE+SEI+IVEGDSAGGS
Sbjct: 371 VEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDPEKSEIYIVEGDSAGGS 430
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRD FQAI+PLRGK+LNVE+ M N+EI NLI+A+G G+ E F RYH
Sbjct: 431 AKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGISDE-FDITKARYH 489
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTF +R+ + L D G +Y PPLYK+ G+ QY Y++ E
Sbjct: 490 KIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKISWGRNFQYAYNEQE 549
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L ++ + + SIQR+KGLGEM QLW+TT++P +R L Q+ +EDA EA+ VFS L
Sbjct: 550 LNELLKTIETKP--SIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKLEDAIEADQVFSML 607
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG V+ RK+ IQ NA ++D
Sbjct: 608 MGEEVEPRKDFIQKNAQYATDID 630
>gi|227508132|ref|ZP_03938181.1| DNA gyrase, B subunit [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227523343|ref|ZP_03953392.1| DNA gyrase, B subunit [Lactobacillus hilgardii ATCC 8290]
gi|227089449|gb|EEI24761.1| DNA gyrase, B subunit [Lactobacillus hilgardii ATCC 8290]
gi|227192361|gb|EEI72428.1| DNA gyrase, B subunit [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 647
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/505 (47%), Positives = 330/505 (65%), Gaps = 12/505 (2%)
Query: 3 YHQKYSRGKPVTTLTC--HVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
Y+ +SRG T + HV S D GT++ F PD +F FD + R+REL
Sbjct: 150 YYMDFSRGHVTTPMKVIDHV----SDDLHGTKVHFLPDPDIFRETTTFDIKVLTARLREL 205
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVD-GI 119
AFLN L I +R D PEK ++ + GG+ YV++L+ DK+ L + + +D GI
Sbjct: 206 AFLNKGLRIIVR--DMRPEKPTEQDFLYEGGIRHYVEYLDKDKETLLKEPIYVEGMDNGI 263
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
T+++A+ + D Y T++ + N+I T +GGTH EG K +LTR +N +K+ +KD + +
Sbjct: 264 TVEVAIDYSED-YHSTLMTFTNNIHTYEGGTHEEGFKRALTRVINDYARKNNLLKDNEAN 322
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSGE VREG T ++S++ P+P+FEGQTKT+LGN + R V D+ ++ +++L +P +
Sbjct: 323 LSGEDVREGTTAVVSIKHPDPQFEGQTKTKLGNSDARTVTDRIFSDHFSKFLMENPKLAR 382
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ + L A KA AAKRAR++ R+KS L SSLPGKLAD +S P+ SE+FIVEGDSAG
Sbjct: 383 KIIDRGLLASKARSAAKRAREVTRRKSGLEISSLPGKLADNTSKDPKISELFIVEGDSAG 442
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGR R QAILP+RGKILNVE+ + NEEI++L A+G G G+DF +
Sbjct: 443 GSAKQGRARLTQAILPIRGKILNVEKASMDRILANEEIRSLFTAMGTGF-GDDFDLSKIN 501
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHI+TLLLT YRY + L D G +YV PPLY+V +GK +Y D
Sbjct: 502 YHKLIIMTDADVDGAHIQTLLLTLIYRYMRPLIDAGYVYVAQPPLYQVRQGKMQRYIDSD 561
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
+L + + + IQR+KGLGEM QLW+TT+NPE R L ++ DAAEAN VFS
Sbjct: 562 DDLNQFLGTLQPSPKPVIQRYKGLGEMDAEQLWDTTMNPENRHLLRVESSDAAEANHVFS 621
Query: 480 SLMGARVDTRKELIQNAANLV-NLD 503
LMG +V+ R+E I++ A V NLD
Sbjct: 622 MLMGDKVEPRREFIEDNATFVENLD 646
>gi|163755890|ref|ZP_02163007.1| DNA gyrase, B subunit [Kordia algicida OT-1]
gi|161324061|gb|EDP95393.1| DNA gyrase, B subunit [Kordia algicida OT-1]
Length = 645
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 229/508 (45%), Positives = 341/508 (67%), Gaps = 14/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RGK + V + D++GT + F PD +FT +++++ T+A R+REL++
Sbjct: 144 WEQEYERGKALYP----VKAIGDSDKRGTVVTFKPDASIFTQTLEYNYETLANRMRELSY 199
Query: 63 LNPKLTIALRKEDSDPEKNQY-NEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN +TI L + + EK +Y E F + GL+E++++L+ +++ + DVV F + +GI
Sbjct: 200 LNKGITITLTDKRNKDEKGEYIGEVFHSQEGLKEFIKYLDGNREQIIADVVAFEGEKNGI 259
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+ + + +YS+ + Y N+I T +GGTH+ G + LT TL + + +
Sbjct: 260 PVEVAMTYNT-SYSENLHSYVNNINTHEGGTHLSGFRRGLTHTLKKYAEGTGMLDKLKFD 318
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT IISV+V P+FEGQTKT+LGN EV V Q+V E LT+YLE HPD
Sbjct: 319 ISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVSASVSQAVSEMLTDYLEEHPDDAK 378
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A +A AA++AR++V++K+V+ LPGKL+DCS P + E+F+VEGDSAG
Sbjct: 379 TIVQKVVLAAQARHAAQKAREMVQRKTVMSIGGLPGKLSDCSEQDPAKCEVFLVEGDSAG 438
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK---- 355
G+AKQGRDR FQAILPLRGKILNVE+ + +++NEEI+N+ ALG+ + E+ K
Sbjct: 439 GTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIKNIFTALGVTIGTEEDSKALNL 498
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
LRYHKI+I+ DADVDG+HI TL+LTFF+RY K L + G IY+ PPLY V++G + +Y
Sbjct: 499 SKLRYHKIVIMCDADVDGSHIATLILTFFFRYMKELIENGHIYIAAPPLYLVKKGAKRRY 558
Query: 416 CYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
++D E + F A +IQR+KGLGEM QLW+TT+NP+ R L+Q++I++ EA+
Sbjct: 559 AWNDEERDAIIEEFGQGA--NIQRYKGLGEMNAEQLWDTTMNPDFRTLRQVMIDNGGEAD 616
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
VFS LMG V R+E I+ A N+D
Sbjct: 617 RVFSMLMGDEVPPRREFIEKNAVYANID 644
>gi|435852819|ref|YP_007314138.1| DNA gyrase, B subunit [Halobacteroides halobius DSM 5150]
gi|433669230|gb|AGB40045.1| DNA gyrase, B subunit [Halobacteroides halobius DSM 5150]
Length = 634
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 351/503 (69%), Gaps = 13/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+QKY RG P L + + + GT IRF D+++F + ++++++T++ R +ELA+
Sbjct: 142 YYQKYHRGVPDNDLEV----IGNTEETGTEIRFKADEEIFES-VRYNYDTLSQRFKELAY 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN ++ I + E D ++ E+ + GG+ +V+ +N P+H DV+ F + +D +
Sbjct: 197 LNKEVKIKILDEREDLIED---EFKYDGGIISFVEEINEHNTPIHEDVIFFEEQIDNTEV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y+D + +AN+I T +GGTH+ G K++LTRT+N +++ +KD D +LS
Sbjct: 254 EVAIQYNTD-YADKIFTFANNINTHEGGTHLSGFKSALTRTINDYARQNDFLKDDDNNLS 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REG+ II+VR+ +P+FEGQTKT+LGN E+R +VD V + L+ L +P + I
Sbjct: 313 GDDIREGIVAIINVRLTDPQFEGQTKTKLGNSEIRGMVDSIVSKGLSTILSENPKLGKQI 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KS++A +A AAK+AR+L ++K+ L S++LPGKLADCSS EESEI+IVEGDSAGGS
Sbjct: 373 VKKSIAAAQARKAAKKARELTKRKNALVSTALPGKLADCSSRNAEESEIYIVEGDSAGGS 432
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPL+GKILNVE+ + N+EI++LI ALG G+ ++F LRY
Sbjct: 433 AKQGRDREFQAILPLKGKILNVEKARLDRVLSNKEIKSLITALGTGI-ADEFDMNNLRYR 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYRY + L +EG +Y+ PPLYKV++G++ +Y Y D +
Sbjct: 492 KIIIMTDADVDGAHIRTLLLTFFYRYMRPLLEEGLVYIAQPPLYKVKKGRREEYVYKDRQ 551
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ + SIQR+KGLGEM P+QLW+TT++PE R L Q+ I D A+ VF+ L
Sbjct: 552 LQDLLEEIGKKRT-SIQRYKGLGEMNPIQLWKTTMDPENRTLLQVQISDEVIADDVFTKL 610
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V R+E IQ A V NLD
Sbjct: 611 MGDKVKPRREFIQRHAKEVQNLD 633
>gi|218961619|ref|YP_001741394.1| DNA gyrase subunit B [Candidatus Cloacamonas acidaminovorans]
gi|167730276|emb|CAO81188.1| DNA gyrase subunit B [Candidatus Cloacamonas acidaminovorans str.
Evry]
Length = 632
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/505 (46%), Positives = 342/505 (67%), Gaps = 16/505 (3%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF-TTAIQFDHNTIAGRIREL 60
EY ++ RG PVT L + ++ GT + F PD +F TT FD+ + R+REL
Sbjct: 140 EYFMRFERGLPVTELQV----LGDTNKTGTVVTFRPDPLIFETTEFSFDY--LTSRLREL 193
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGI 119
AFLN L I L+ E S + +++ + GG++ +V++LN +KKPL + V +G+
Sbjct: 194 AFLNSGLRIILKDERS----GRVHDFKYEGGIKSFVEYLNQNKKPLFPNPIYISSVKEGM 249
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++ALQ+ ++ Y + + +AN+I T +GGTH+ G K+ LTR +N+ K + +K++ +S
Sbjct: 250 EFEVALQY-NEGYQENIFSFANNINTTEGGTHLSGFKSGLTRAVNTYIKNADLLKNEKVS 308
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
SGE +REGLT +IS+++ NP+FEGQTKT+L N EV +V+ +V E L EY E HP
Sbjct: 309 PSGEDIREGLTAVISLKIANPQFEGQTKTKLQNSEVEGIVNSAVYEKLMEYFEEHPAEAK 368
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I KS+ A ++ AA++AR+L R+K+VL S SLPGKLADC+ + PE++E+F+VEGDSAG
Sbjct: 369 NITMKSILAARSREAARKARELTRRKTVLESGSLPGKLADCTLSDPEKTELFLVEGDSAG 428
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL GK+LN E+ + N++IQ +I ALG G+ G++F LR
Sbjct: 429 GSAKQGRDRSFQAILPLWGKMLNTEKARVDKVLNNDKIQPIILALGAGI-GQEFDISKLR 487
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHKIII+ DADVDG+HI TLL+TFFYRY + + +EG +Y+ +PPL++V +GKQ Y Y++
Sbjct: 488 YHKIIIMADADVDGSHIATLLMTFFYRYMRPVIEEGKLYIAMPPLFQVRKGKQKVYVYNE 547
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
E K F + +QR+KGLGEM QLWETTL+P+ R + + ++DA EA+ +F+
Sbjct: 548 EERDKAIREFGEKGVL-VQRYKGLGEMNAEQLWETTLDPKNRKMIAIKMDDAIEADRMFT 606
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG V+ R+E IQ NA + NLD
Sbjct: 607 ILMGDEVEPRREFIQENARYVKNLD 631
>gi|339641127|ref|ZP_08662571.1| DNA gyrase, B subunit [Streptococcus sp. oral taxon 056 str. F0418]
gi|339454396|gb|EGP67011.1| DNA gyrase, B subunit [Streptococcus sp. oral taxon 056 str. F0418]
Length = 649
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/509 (45%), Positives = 339/509 (66%), Gaps = 17/509 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG+ V L + DR GT + F PD ++FT +++D + + RI+ELAF
Sbjct: 149 HFQEYRRGQVVADLKV----IGDTDRTGTTVHFTPDPEIFTETVEYDFDKLNKRIQELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L+I++ + E Q Y + GG+ YVQ++N +K+ + D + ++D IT+
Sbjct: 205 LNRGLSISITDKRDGME--QTKNYHYEGGIASYVQYINENKEVIFDSPIYTDGEMDDITV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ D +L+
Sbjct: 263 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENDDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 322 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVAKKI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P ++E+FIVEGDSAGGS
Sbjct: 382 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNPVQTELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 442 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +++
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGA 560
Query: 422 LKKVKSSFPSNALYS-------IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
+++K + A YS IQR+KGLGEM QLWETT++PE R++ ++ ++DAAEA
Sbjct: 561 DQEIKLQ-EALARYSEGRSKPTIQRYKGLGEMDDHQLWETTMDPEHRLMARVSVDDAAEA 619
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLD 503
+ +F LMG RV+ R+E I+ A LD
Sbjct: 620 DKIFDMLMGDRVEPRREFIEENAVYSTLD 648
>gi|423068891|ref|ZP_17057679.1| DNA gyrase subunit B [Streptococcus intermedius F0395]
gi|355366191|gb|EHG13910.1| DNA gyrase subunit B [Streptococcus intermedius F0395]
Length = 648
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 236/508 (46%), Positives = 337/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG+ V L + DR GT + F PD ++FT I+FD + R++ELAF
Sbjct: 148 HFQEYRRGQVVADLKI----IGETDRTGTTVHFTPDPEIFTETIEFDFEKLNKRVQELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 204 LNRGLRISITDKREGLE--QTKDYHYEGGIASYVQYINENKDVIFENPIYTDGEMDDITV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 262 EVAIQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 321 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVAKKI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P E+E+FIVEGDSAGGS
Sbjct: 381 IEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPHETELFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 441 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVNKARYQ 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V +Y A
Sbjct: 500 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYIAQPPIYGVKVGSEVKEYIQPGA 559
Query: 421 ----ELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+ + + SIQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 560 NQEEELQLALERYSEGRSKPSIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 619
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 620 KIFDMLMGDRVEPRREFIEENAVYSTLD 647
>gi|372211058|ref|ZP_09498860.1| DNA gyrase subunit B [Flavobacteriaceae bacterium S85]
Length = 645
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/511 (45%), Positives = 336/511 (65%), Gaps = 20/511 (3%)
Query: 3 YHQKYSRGK---PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRE 59
+ Q+Y RGK PV T V ++ GT + F PDK +F ++++ T+A R+RE
Sbjct: 144 WEQEYERGKALYPVKT-------VGDSNKTGTEVTFIPDKSIFQQTTEYNYETLANRMRE 196
Query: 60 LAFLNPKLTIALR-KEDSDPEKNQYNEYFFA-GGLEEYVQWLNTDKKPL-HDVVGFRKDV 116
LA+LN +T+ L K D E N +E F + GL E+V++L+ ++ L DV+ +
Sbjct: 197 LAYLNKGITVTLTDKRHKDDEGNFISETFHSEDGLAEFVKYLDGTREQLTADVISMEGEK 256
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
+GI +++A+ + + +Y++ + Y N+I T +GGTH+ G + LT TL S +
Sbjct: 257 NGIPVEVAMVYNT-SYAENLHSYVNNINTHEGGTHLSGFRRGLTTTLKKYADASGMLSKL 315
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
+SG+ REGLT I+SV+V P+FEGQTKT+LGN EV V Q+V E LT+YLE HPD
Sbjct: 316 KFDVSGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNREVSAAVSQAVSEMLTDYLEEHPD 375
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
+I+ K + A +A AA +AR++V++K+V+ LPGKL+DCS T PE+ EIF+VEGD
Sbjct: 376 DAKTIVQKVILAAQARHAATKAREMVQRKTVMSIGGLPGKLSDCSETDPEKCEIFLVEGD 435
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK- 355
SAGG+AKQGRDR FQAILPLRGKILNVE+ + +++NEEI+N+ ALG+ + E+ K
Sbjct: 436 SAGGTAKQGRDREFQAILPLRGKILNVEKAMQHKVFENEEIKNMFTALGVTIGTEEDSKA 495
Query: 356 ---EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ 412
LRYHK++I+ DADVDG+HI TL+LTFF+RY + + ++G +Y+ PPLY V++G +
Sbjct: 496 LNLSKLRYHKVVIMCDADVDGSHIATLILTFFFRYMREMVEQGYVYIATPPLYLVKKGNK 555
Query: 413 VQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
+Y +DD + + F +A SIQR+KGLGEM QLW+TT+NPE R L+Q+ I+
Sbjct: 556 KEYAWDDNQRDMINMKFGGSA--SIQRYKGLGEMNAEQLWDTTMNPEFRTLRQVSIDSDV 613
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ VFS LMG V R+E I+ A N+D
Sbjct: 614 EADRVFSMLMGDEVPPRREFIEKNAKYANID 644
>gi|326799865|ref|YP_004317684.1| DNA gyrase B subunit [Sphingobacterium sp. 21]
gi|326550629|gb|ADZ79014.1| DNA gyrase, B subunit [Sphingobacterium sp. 21]
Length = 652
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 236/512 (46%), Positives = 352/512 (68%), Gaps = 17/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y++GKP+ + + DR GT + F PD +FT + ++T+AGR+RELA+
Sbjct: 146 FKQEYAQGKPLYDVKV----IGETDRTGTNVTFHPDPSIFTMTTTYSYDTLAGRLRELAY 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN +LT+ +E+ + ++ E++ GGL E+V++L+ +++PL D + GI
Sbjct: 202 LNKGIRLTLLDEREEQEDGALRHEEFYSEGGLSEFVKFLDGNRQPLIPDPIHVEGIKQGI 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++LALQ+ +D YS+ + Y N+I TI+GGTH+ G + LTRTL + KS +K+ +
Sbjct: 262 PVELALQY-NDTYSENVHSYVNNINTIEGGTHVAGFRRGLTRTLKAYADKSGLLKNLKVE 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
++G+ REGLT +ISV+V P+FEGQTKT+LGN EV VD +V E L YLE +P
Sbjct: 321 ITGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDVAVGEILGTYLEENPREAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A +A AA++ARD+V++K+V+ S LPGKLADC++ P + EI++VEGDSAG
Sbjct: 381 AIVQKVIIAAQARAAARKARDMVQRKTVMGGSGLPGKLADCANNDPAKCEIYLVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG-EDFKK--- 355
G+AKQGR+R FQAILPLRGKILNVE+ E +Y+NEEI+N+ ALG+ + ED K
Sbjct: 441 GTAKQGRNREFQAILPLRGKILNVEKAMEHKIYENEEIKNMFTALGVSIGTPEDAKALNL 500
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
E LRYH+III+TDADVDG+HI TL+LTF++RY K L + G +Y+ PPLY V++GK+ +Y
Sbjct: 501 EKLRYHRIIIMTDADVDGSHITTLILTFYFRYMKELIERGYVYIATPPLYLVKKGKEHEY 560
Query: 416 CYDD----AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
+++ A ++++K + ++++ +QR+KGLGEM QLW+TT+NPE R L+Q+ IE+A
Sbjct: 561 AWNENQRLAAIQRLKGAGKEDSVH-VQRYKGLGEMNAEQLWDTTMNPETRTLRQVSIENA 619
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AE + VFS LMG V R+E I+ A +D
Sbjct: 620 AECDRVFSMLMGDEVAPRREFIERNAKYAKID 651
>gi|29348838|ref|NP_812341.1| DNA gyrase subunit B [Bacteroides thetaiotaomicron VPI-5482]
gi|298387912|ref|ZP_06997461.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_14]
gi|383125011|ref|ZP_09945670.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_6]
gi|29340744|gb|AAO78535.1| DNA gyrase subunit B [Bacteroides thetaiotaomicron VPI-5482]
gi|251840836|gb|EES68917.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_6]
gi|298259319|gb|EFI02194.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_14]
Length = 653
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 236/512 (46%), Positives = 344/512 (67%), Gaps = 18/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y GKP+ + V V D GTR +FWPD +FT + +D+ +A R+RELA+
Sbjct: 148 YQQEYEIGKPLYS----VKEVGVSDITGTRQQFWPDDTIFTETV-YDYKILASRLRELAY 202
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDVDG 118
LN L I+L R+ ++ + + +E F++ GL E+V+++ + ++ L +DV+ + G
Sbjct: 203 LNAGLRISLTDRRVVNEEDGSFKSEVFYSEEGLREFVRFIESSREHLINDVIYLNSEKQG 262
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I I++A+ + + +S+ + Y N+I TI+GGTH+ G + +LTRTL + SK ++ +
Sbjct: 263 IPIEIAIMYNT-GFSENVHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDSKMLEKVKV 321
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+SG+ REGLT +ISV+V P+FEGQTKT+LGN EV VDQ+V E L YLE HP
Sbjct: 322 EISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEVLAYYLEEHPKEA 381
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
+I+ K + A A AA++AR++V++KS + LPGKLADCS P + E+F+VEGDSA
Sbjct: 382 KTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDPSKCELFLVEGDSA 441
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA- 357
GG+AKQGR+R FQAILPLRGKILNVE+ +++EI+N+ ALG+ + ED KEA
Sbjct: 442 GGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYTALGVTIGTEDDSKEAN 501
Query: 358 ---LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
LRYHKIII+TDADVDG+HI TL++TFF+RY + G +Y+ PPLY ++GK +
Sbjct: 502 IEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLYIATPPLYLCKKGKVEE 561
Query: 415 YCYDDAELKKVKSSFPS---NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
YC+ DA+ +K ++ NA+++ QR+KGLGEM QLWETT++P+ RMLKQ+ I++A
Sbjct: 562 YCWTDAQRQKFIDTYGGGLENAVHT-QRYKGLGEMNAQQLWETTMDPDNRMLKQVNIDNA 620
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AEA+ +FS LMG V R+E I+ A N+D
Sbjct: 621 AEADYIFSMLMGEDVGPRREFIEENATYANID 652
>gi|379009896|ref|YP_005267708.1| DNA gyrase subunit B [Acetobacterium woodii DSM 1030]
gi|375300685|gb|AFA46819.1| DNA gyrase subunit B [Acetobacterium woodii DSM 1030]
Length = 638
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 244/503 (48%), Positives = 343/503 (68%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y +GKPV LT + +R GT I F PDK +F ++D + + R+RELAF
Sbjct: 144 FFQTYQKGKPVDKLTVTG----TTNRTGTTIYFKPDKDIFDET-EYDFDILEHRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN ++I+L E P++ + Y++ GG+ YV+++N +K PL+D + F K+ D +
Sbjct: 199 LNKGVSISLTNEKDSPKRKE--NYYYTGGIHSYVEYMNRNKDPLYDKITYFEKEQDDYAL 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A Q+ + YS+ + YAN+I T +GGTH+ G K++LTRT+N+ +K+ +K D +L+
Sbjct: 257 EIAFQYTT-GYSENIFSYANNINTPEGGTHLNGFKSALTRTINTYARKNGFLKGNDKNLT 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT I+S+++ +P+FEGQTK++LGN EV+ +V+ V + L+ +E +P + SI
Sbjct: 316 GEDAREGLTAIVSIKLLDPQFEGQTKSKLGNTEVKGIVETIVSDQLSALMEENPSIAKSI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+LSA +A AAK+AR+ R+KS L S++LPGKLADC P SEI+IVEGDSAGGS
Sbjct: 376 IEKTLSAARAREAAKKAREFTRRKSALDSTALPGKLADCREKDPALSEIYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRD + QAILPLRGKILNVE+ + + ++++I A G GV GE+F E RYH
Sbjct: 436 AKSGRDSKTQAILPLRGKILNVEKARLDRILTTDSLKSMIIAFGTGV-GEEFNVEKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYRY L + G +Y+ PPLYK+ RGKQV Y Y D +
Sbjct: 495 KIIIMTDADVDGAHIRTLLLTFFYRYMPGLIEAGYVYIAQPPLYKITRGKQVDYAYTDRD 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+K + S+QR+KGLGEM QLWETT++P R L Q+ IE+AA A+ +F+ L
Sbjct: 555 LEKKMEMIDDRSRISLQRYKGLGEMDAHQLWETTMDPGVRTLLQVNIEEAAYADEIFTIL 614
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V RKE I+ NA + NLD
Sbjct: 615 MGDKVQPRKEFIERNAKKVKNLD 637
>gi|157151219|ref|YP_001450712.1| DNA gyrase subunit B [Streptococcus gordonii str. Challis substr.
CH1]
gi|157076013|gb|ABV10696.1| DNA gyrase, B subunit [Streptococcus gordonii str. Challis substr.
CH1]
Length = 649
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/509 (45%), Positives = 340/509 (66%), Gaps = 17/509 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y+RG+ V L + DR GT + F PD ++FT ++FD + RI+ELAF
Sbjct: 149 HFQEYTRGQVVADLKV----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRIQELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L+I++ + E Q +Y + GG+ YVQ++N +K+ + D + +++ IT+
Sbjct: 205 LNRGLSISITDKRDGME--QSKDYHYEGGIASYVQYINENKEVIFDNPIYTDGEMEDITV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 263 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 322 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVAKKI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P E+E+FIVEGDSAGGS
Sbjct: 382 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNPVETELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 442 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDISKCRYQ 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V+
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYIAQPPIYGVKVGSEVKEYIQPGA 560
Query: 422 LKKVKSSFPSNALYS-------IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
+++K + A YS IQR+KGLGEM QLWETT++PE R++ ++ ++DAAEA
Sbjct: 561 DQEIKLQ-EALARYSEGRSKPTIQRYKGLGEMDDHQLWETTMDPEHRLMARVSVDDAAEA 619
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLD 503
+ +F LMG RV+ R+E I+ A LD
Sbjct: 620 DKIFDMLMGDRVEPRREFIEENAVYSTLD 648
>gi|422860418|ref|ZP_16907062.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK330]
gi|327469614|gb|EGF15083.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK330]
Length = 649
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/508 (46%), Positives = 338/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 149 HYQEYRRGHVVADLEI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 205 LNRGLRISITDKRDGME--QVKDYHYEGGIVSYVQYINENKDVIFETPIYTDGEMDDITV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 263 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 322 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVARKI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P+E+E+FIVEGDSAGGS
Sbjct: 382 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPQETELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 442 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G V +Y A
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVYIAQPPIYGVKVGSDVKEYIQPGA 560
Query: 421 ----ELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+ + + + +IQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 561 NQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 620
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 621 KIFDMLMGDRVEPRREFIEENAVYSTLD 648
>gi|452207169|ref|YP_007487291.1| DNA gyrase subunit B [Natronomonas moolapensis 8.8.11]
gi|452083269|emb|CCQ36556.1| DNA gyrase subunit B [Natronomonas moolapensis 8.8.11]
Length = 639
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/496 (48%), Positives = 334/496 (67%), Gaps = 7/496 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ ++ G+P + V ++ + GT IRFWPD +F T F+++T+ R+RELAF
Sbjct: 142 WRHRFDHGEPEADIE-RVREMNPGEGTGTEIRFWPDGDIFETT-AFEYSTLESRLRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LNP + IALR E SD N EY GG+ E+V +LN ++ LH D+V D D I +
Sbjct: 200 LNPGVEIALRDERSDEGTNSVFEY--EGGIREFVAYLNETRELLHEDIVYVEDDADDIHV 257
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q + ++ +AN+I T +GGTH+ G K +LTR +N + + D D +L
Sbjct: 258 EIAMQ-ATAGVQGSIHAFANNINTREGGTHLTGFKTALTRIINDYAGSNGLLSDLDGTLK 316
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT +ISV+ P+P+FEGQTKT+LGN +VR +V+ +V E L YLE HPD ++I
Sbjct: 317 GEDIREGLTAVISVKHPDPQFEGQTKTKLGNSDVRGIVEGAVHEKLATYLEEHPDTAEAI 376
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+SK++ A KA AAK+A +L R+KS L S+SLPGKLADC +PE++E+F+ EGDSAGGS
Sbjct: 377 VSKAVEAAKARKAAKKAEELTRRKSALESTSLPGKLADCRERSPEDAELFVTEGDSAGGS 436
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+ FQAILP+RGKILNVE+ + +N EI+NLI A+G G+ GE+F EA RYH
Sbjct: 437 AKQGRNPEFQAILPIRGKILNVEKHRLDRILENNEIRNLITAIGTGI-GEEFDIEAARYH 495
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+I+L DADVDGAHIRTLLLTF YR+ L + G +Y PPLY++ + +AE
Sbjct: 496 KVILLCDADVDGAHIRTLLLTFLYRHMTPLIEAGYVYAAQPPLYRIRYNGETYDAMTEAE 555
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
++V + +QRFKGLGEM P QLWETT++P+ R+LK++ +EDAA A+ +FS L
Sbjct: 556 REEVVADVCGGDPDQVQRFKGLGEMNPEQLWETTMDPDNRILKRITVEDAAAADRMFSVL 615
Query: 482 MGARVDTRKELIQNAA 497
MG V RK+ I++ A
Sbjct: 616 MGDAVGPRKQFIKDHA 631
>gi|409198278|ref|ZP_11226941.1| DNA gyrase subunit B [Marinilabilia salmonicolor JCM 21150]
Length = 655
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/510 (46%), Positives = 340/510 (66%), Gaps = 15/510 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+YS+GKP++++ V + D GT I F PD +F ++ ++ +A R+REL+F
Sbjct: 151 YRQEYSKGKPLSSIE----EVGTTDINGTWITFKPDDSIFNET-EYKYSVLANRMRELSF 205
Query: 63 LNPKLTIAL-RKEDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKPLHDV-VGFRKDVDGI 119
LN L I L K + D E N +E F++ GL E+V++++ +++ L D + + + +
Sbjct: 206 LNAGLEIVLIDKREVDDEGNVKSERFYSDEGLLEFVKFIDVNREHLIDQPISISTEKNDV 265
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+D+A+ + + ++++ + Y N+I TI+GGTH+ G + LTRTL + KS +
Sbjct: 266 PVDIAIVYNT-SFNENIYSYVNNINTIEGGTHLTGFRRGLTRTLKNWADKSGLLSKLKFD 324
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT +ISV+V P+FEGQTKT+LGN EV VDQ+V L YLE +P
Sbjct: 325 ISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNSEVSLAVDQAVSTMLNNYLEENPKDAK 384
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I++K + A A AA++AR+LV++KSVL LPGKLADCS P +SEIF+VEGDSAG
Sbjct: 385 AIVNKVILAATARHAARKARELVQRKSVLTGGGLPGKLADCSEKDPAQSEIFLVEGDSAG 444
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK---- 355
G+AKQGR RRFQAILPLRGKILNVE+ + +++++EI+N+ ALG+ + ED K
Sbjct: 445 GTAKQGRSRRFQAILPLRGKILNVEKALQHRVFESDEIKNIFTALGVNIGTEDDSKALNT 504
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
E LRYHKI+I+TDADVDG HI TL++TFF+RY K L +G +Y+ PPLY +++GK QY
Sbjct: 505 EKLRYHKIVIMTDADVDGRHINTLIMTFFFRYMKELIKDGYLYIAAPPLYFLKKGKNEQY 564
Query: 416 CYDDAELKKVKSSFPSNALYS--IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
C+ DA+ ++ F S IQR+KGLGEM QLW TT+NPE R+L+Q+ ++AAE
Sbjct: 565 CWTDAQRREFVEKFADGKEDSVHIQRYKGLGEMNAEQLWHTTMNPENRLLRQVTYDNAAE 624
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +FS LMG V R+E I+ A N+D
Sbjct: 625 ADRIFSMLMGDDVPPRREFIEKNATYANID 654
>gi|257127028|ref|YP_003165142.1| DNA gyrase subunit beta [Leptotrichia buccalis C-1013-b]
gi|257050967|gb|ACV40151.1| DNA gyrase, B subunit [Leptotrichia buccalis C-1013-b]
Length = 660
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 237/527 (44%), Positives = 341/527 (64%), Gaps = 32/527 (6%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG P T + V GT +RF D ++F T + +D++ + R++ELA+
Sbjct: 139 FRQTYERGVP--TSPVEEIGVADDSAHGTVVRFKADDEIFETTV-YDYSVLESRLKELAY 195
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFR--------K 114
LN L I L E + E + E+ F GG+++++ + ++K + DV+ K
Sbjct: 196 LNKGLKIELADE-RNAENVKAEEFLFEGGIKDFLNEIIDEEKIIDDVIYMADTMQIEEAK 254
Query: 115 DVDG----------------ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 158
+V+ + +++A+ + + + +T+ + N+I T +GGTH+ G + +
Sbjct: 255 EVEAEDENGNIVIKQRSAKFVEVEIAMNYTT-SQRETVYSFVNNINTHEGGTHVSGFRTA 313
Query: 159 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 218
LTRT+N + K+ +KDK+ + G VREGL C+ISV++P P+FEGQTKT+LGN EV +
Sbjct: 314 LTRTINDIAKQMNLIKDKNGTFQGTDVREGLVCVISVKIPEPQFEGQTKTKLGNSEVTGI 373
Query: 219 VDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLA 278
V V L YLE HP + ++ K + + +A AAK+AR+LV +K+ L SLPGKLA
Sbjct: 374 VSNIVGSNLKFYLEDHPKAAEKVIEKMVMSKRAREAAKKARELVLRKNTLEVGSLPGKLA 433
Query: 279 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQ 338
DCSS P ESEIFIVEG+SAGGSAKQGRDRRFQAILPLRGKILNVE+ +N EI+
Sbjct: 434 DCSSKDPAESEIFIVEGNSAGGSAKQGRDRRFQAILPLRGKILNVEKSGIHKALENAEIR 493
Query: 339 NLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIY 398
+I A G G GE+ + LRYHKI+I+TDADVDGAHIRTL+LTFFYR+ + L +EG IY
Sbjct: 494 AMITAFGAGF-GEEIDLKKLRYHKIVIMTDADVDGAHIRTLMLTFFYRHLRELINEGYIY 552
Query: 399 VGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNAL-YSIQRFKGLGEMMPVQLWETTLN 457
+ PPLYK++ GK ++Y Y D ++K+V + Y+IQR+KGLGEM P QLWETTL+
Sbjct: 553 IAQPPLYKIQAGKAIRYAYSDDQMKQVTRVLENEGRKYTIQRYKGLGEMNPEQLWETTLD 612
Query: 458 PEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV-NLD 503
PE R L ++ +EDA+ A+ +F+ LMG +V+ R++ I++ AN V NLD
Sbjct: 613 PEVRTLLKVSMEDASYADKMFNILMGDKVEPRRKFIEDNANYVRNLD 659
>gi|385808591|ref|YP_005844987.1| DNA gyrase subunit B [Ignavibacterium album JCM 16511]
gi|383800639|gb|AFH47719.1| DNA gyrase subunit B [Ignavibacterium album JCM 16511]
Length = 665
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 244/531 (45%), Positives = 344/531 (64%), Gaps = 41/531 (7%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG PV + + D+ GT+I F PDK +F +F+ T+A R+RELA+
Sbjct: 145 YFQEYRRGVPVEKVKE--IGTYKGDQTGTKITFMPDKTIFKVT-KFNFETVAERLRELAY 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN +T+ L+ E+ E+ Y F GGL ++V++L+ ++P+H + + + ++
Sbjct: 202 LNKDVTMILKDENDGTEET----YRFKGGLIDFVKYLDEQREPIHKPIYIEGEKENTPVE 257
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLS 181
+A ++ S++YS+ + Y N+I TI+GGTH+ G + +LTRT N+ K+ +K+ I+L+
Sbjct: 258 IAFEY-SNSYSENVHSYVNNINTIEGGTHLVGFRTALTRTFNNYAYKNGLIKENSKITLT 316
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ REGLT ++SV+V P+FEGQTKT+LGN EV+ VV+ V E L+EYLE +P V I
Sbjct: 317 GDDFREGLTAVVSVKVMEPQFEGQTKTKLGNSEVKSVVETIVGEKLSEYLEQNPSVAKKI 376
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KSL A +A AA++AR+LVR+K+ L S LPGKLADCS T PE EI+IVEGDSAGGS
Sbjct: 377 IEKSLKAAEAREAARKARELVRRKNALDSMHLPGKLADCSITDPEHCEIYIVEGDSAGGS 436
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILP++GKILNVE+ + +N+EIQ ++ A+G G+ GEDF RY
Sbjct: 437 AKQGRDRRFQAILPIKGKILNVEKAKLNKILENQEIQAIVAAIGAGI-GEDFDPTKSRYG 495
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KII++TDADVDG+HIRTLLLTFFYR+ K L G +Y+ PPLYKV++GK+ + +DD E
Sbjct: 496 KIILMTDADVDGSHIRTLLLTFFYRHMKELITSGRVYIAQPPLYKVKKGKEEVFAFDDEE 555
Query: 422 LKKVKSSF-----------------------------PSNALYSIQRFKGLGEMMPVQLW 452
L ++ F P + I R+KGLGEM P QLW
Sbjct: 556 LDQILKRFKADGKAAKAKLKEIETEGEQVIETDEEGQPKGVV--ITRYKGLGEMNPEQLW 613
Query: 453 ETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
TT+NPE R + Q+ +E AA A+ +F +LMG V+ R+E I+ A NLD
Sbjct: 614 STTMNPETRTILQVNLESAAAADKIFETLMGDAVEPRREFIEKHAKYANLD 664
>gi|357058348|ref|ZP_09119202.1| B subunit [Selenomonas infelix ATCC 43532]
gi|355374201|gb|EHG21502.1| B subunit [Selenomonas infelix ATCC 43532]
Length = 684
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 245/499 (49%), Positives = 334/499 (66%), Gaps = 12/499 (2%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
++RG VT H + + + GTR+ F PD ++FT + T+ R+RELAFLN
Sbjct: 195 FTRG--VTQEKLH--EIGASETTGTRVHFVPDPEIFTVTT-YSFETLKHRLRELAFLNHG 249
Query: 67 LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLAL 125
+TI L E + E+ + + F GG+ +V LN K+ +++ + F D +++A+
Sbjct: 250 ITITLVDERGEAERRE--TFHFDGGIRSFVSHLNRKKETINEEPIYFNGVKDDTVVEIAM 307
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
Q+ +D+Y + + + N+I T +GGTH+ G K +LTR N ++ +KDKD +LSGE V
Sbjct: 308 QY-NDSYQENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARRLNVLKDKDGNLSGEDV 366
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 245
REGLTC+IS++V P+FEGQTKT+LGN EVR +VD V E LTEY E +P + +L K+
Sbjct: 367 REGLTCVISLKVREPQFEGQTKTKLGNSEVRGIVDSIVTEGLTEYFEENPAITKKVLDKA 426
Query: 246 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 305
L A +A AA++AR+L R+K+ L SSLPGKLADCS P++ EI+IVEGDSAGGSAKQG
Sbjct: 427 LMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPDQCEIYIVEGDSAGGSAKQG 486
Query: 306 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 365
RDRRFQAILPLRGKILNVE+ ++ N EI+ +I A G G+ GE+F RY KIII
Sbjct: 487 RDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGI-GEEFDLAKRRYSKIII 545
Query: 366 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 425
+TDADVDGAHIRTLLLTFFYRY K L D G +Y+ PPLY++ + K+ Y Y D E K
Sbjct: 546 MTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVYIAQPPLYQIRKDKKHFYTYSDEEQAKK 605
Query: 426 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 485
+ + +IQR+KGLGEM P QLWETT+NPE R + Q+ EDA A+ +F+ LMG +
Sbjct: 606 LDEIGRDGV-TIQRYKGLGEMNPEQLWETTMNPEGRTMLQVGAEDAEAADELFTILMGDK 664
Query: 486 VDTRKELIQNAANLV-NLD 503
V+ R++ I+ A LV NLD
Sbjct: 665 VEPRRQFIEENARLVRNLD 683
>gi|343524384|ref|ZP_08761342.1| DNA gyrase, B subunit [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
gi|343398033|gb|EGV10566.1| DNA gyrase, B subunit [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
Length = 648
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/508 (46%), Positives = 336/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG+ V L + DR GT + F PD ++FT I+FD + R++ELAF
Sbjct: 148 HFQEYRRGQVVADLKI----IGETDRTGTTVHFTPDPEIFTETIEFDFEKLNKRVQELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 204 LNRGLRISITDKREGLE--QTKDYHYEGGIASYVQYINENKDVIFENPIYTDGEMDDITV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 262 EVAIQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 321 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVAKKI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P E+E+FIVEGDSAGGS
Sbjct: 381 IEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPHETELFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 441 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVNKARYQ 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY-----C 416
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V+
Sbjct: 500 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYIAQPPIYGVKVGSEVKEYIQPGV 559
Query: 417 YDDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ EL+ + + SIQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 560 NQEEELQLALERYSEGRSKPSIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 619
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 620 KIFDMLMGDRVEPRREFIEENAVYSTLD 647
>gi|390630913|ref|ZP_10258886.1| DNA gyrase subunit B [Weissella confusa LBAE C39-2]
gi|390483880|emb|CCF31234.1| DNA gyrase subunit B [Weissella confusa LBAE C39-2]
Length = 648
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 238/504 (47%), Positives = 331/504 (65%), Gaps = 10/504 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKD-RQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
Y + RG TT+ H PVD+ +GT + F PD +F +D+ + R+RELA
Sbjct: 151 YAMDFERGHVKTTM--HSAPVDNAPVSRGTIVHFLPDPDIFRETTTYDYKILMNRVRELA 208
Query: 62 FLNPKLTIALRKEDSD-PEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGI 119
FLN L I++ +D PE ++ + GG++EYV++LN +K + D + + + +GI
Sbjct: 209 FLNKGLRISITDNRADEPETESFH---YEGGIKEYVRFLNVNKDVIFDDPIYVEGMENGI 265
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ D Y ML + N+I T +GGTH G KA+LTR +N +K+ +K+ D +
Sbjct: 266 EVEVSLQYTDD-YHSNMLSFTNNIHTYEGGTHETGFKAALTRVINDYARKNGQLKENDDA 324
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSG+ VREGLT I+SV+ PNP+FEGQTKT+LGN + R VD+ E ++ +P V
Sbjct: 325 LSGDDVREGLTAIVSVKHPNPQFEGQTKTKLGNSDARTAVDRMFSETFNRFMMENPAVAK 384
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR+ R+KS L ++LPGKLAD +S PE SE+FIVEGDSAG
Sbjct: 385 QIVEKGILAGKARMAAKRAREATRKKSGLEIANLPGKLADNTSKDPEISELFIVEGDSAG 444
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGR+R QAILP+RGKILNVE+ + NEEI++L A+G G G +F +
Sbjct: 445 GSAKQGRERLTQAILPIRGKILNVEKASLDKILANEEIRSLFTAMGTGF-GNEFDVTKAK 503
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLT YRY + L D G IY+ PPLY+V +GK VQY D
Sbjct: 504 YHKLIIMTDADVDGAHIRTLLLTLIYRYMRPLLDAGYIYIAQPPLYQVRQGKFVQYLDSD 563
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+ + + P++ IQR+KGLGEM QLWETT++P R L ++ ++DA +A+ VFS
Sbjct: 564 EELEALLPTLPASPKPVIQRYKGLGEMDAEQLWETTMDPSVRRLLRVEMDDAVDADQVFS 623
Query: 480 SLMGARVDTRKELIQNAANLVNLD 503
LMG +V+ R+E I+ A LD
Sbjct: 624 MLMGDKVEPRREFIEENAQYAELD 647
>gi|389818749|ref|ZP_10208924.1| DNA gyrase subunit B [Planococcus antarcticus DSM 14505]
gi|388463659|gb|EIM06006.1| DNA gyrase subunit B [Planococcus antarcticus DSM 14505]
Length = 642
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 236/503 (46%), Positives = 330/503 (65%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++ K+ RG L HV + + GT IRF D ++F ++ + + R+RELA+
Sbjct: 147 HYIKFERGAVAEDL--HV--IGDSNHTGTTIRFKADSEIFKETTVYEFDLLDHRLRELAY 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITI 121
LN L I ++ E EK + Y F GG++ YV+ LN K P+H+ F + +GIT+
Sbjct: 203 LNRGLRIVVKDEREGEEKEKI--YHFEGGIKSYVEHLNKTKDPIHEEAIFVEAEREGITV 260
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y+ + +AN+I T +GGTH G K +LTR +N +K+ +K++D++L+
Sbjct: 261 EVAMQYNA-GYAANIFSFANNINTHEGGTHESGFKTALTRVVNDYARKNGMLKEQDLNLT 319
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN EV +V+ +L +P V I
Sbjct: 320 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNTEVSTIVNNLFSGGFDRFLLENPSVSRKI 379
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A A +AAK+AR+ R+KSVL SSLPGKLADCSS P+ SEI+IVEGDSAGGS
Sbjct: 380 VEKGIMASHARMAAKKAREFTRRKSVLEVSSLPGKLADCSSRDPKISEIYIVEGDSAGGS 439
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILPLRGKILNVE+ + N EI+N+I ALG G+ GE+F E RYH
Sbjct: 440 AKSGRDRHFQAILPLRGKILNVEKARLDRILTNAEIRNIITALGTGI-GEEFNLEKARYH 498
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFF+RY + L + G IY+ PPL+++++GK V Y Y D +
Sbjct: 499 KVVIMTDADVDGAHIRTLLLTFFFRYMRPLLEAGYIYIAQPPLFQIKQGKHVDYVYTDEQ 558
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LK +IQR+KGLGEM QLW+TT++P+ R L Q+ + DA A+ F L
Sbjct: 559 LKVALEKLSPTPKPNIQRYKGLGEMNATQLWDTTMDPDVRTLLQVTLNDAMVADETFHIL 618
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG V+ R+ I +NA + NLD
Sbjct: 619 MGDDVEPRRNFIEENAKYVKNLD 641
>gi|418965395|ref|ZP_13517169.1| DNA gyrase, B subunit [Streptococcus constellatus subsp.
constellatus SK53]
gi|383342591|gb|EID20803.1| DNA gyrase, B subunit [Streptococcus constellatus subsp.
constellatus SK53]
Length = 648
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/508 (46%), Positives = 337/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG+ V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 148 HFQEYRRGQVVADLKI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 204 LNRGLRISITDKREGLE--QTKDYHYEGGIASYVQYINENKDVIFENPIYTDGEMDDITV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 262 EVAIQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 321 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVAKKI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P E+E+FIVEGDSAGGS
Sbjct: 381 IEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPHETELFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 441 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVNKARYQ 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V +Y A
Sbjct: 500 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYIAQPPIYGVKVGSEVKEYIQPGA 559
Query: 421 ----ELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+ + + SIQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 560 NQEEELQLALERYSEGRSKPSIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 619
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 620 KIFDMLMGDRVEPRREFIEENAVYSTLD 647
>gi|429726067|ref|ZP_19260877.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 473 str. F0040]
gi|429148108|gb|EKX91121.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 473 str. F0040]
Length = 661
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/521 (45%), Positives = 342/521 (65%), Gaps = 26/521 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+YS GKP+ + V DR+GTR +FWPD ++FTT + ++ +A R+RELAF
Sbjct: 146 YQQEYSAGKPLYDVKV----VGQTDRRGTRQQFWPDPEIFTTTT-YRYDILANRMRELAF 200
Query: 63 LNPKLTIALRKE-DSDPEKNQYNEYFFA-GGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN LTI L E + D +E F++ GL E+V++ ++ + PL DV+ + +GI
Sbjct: 201 LNAGLTITLTDEREIDENGKPLSETFYSEQGLREFVRYQDSMRNPLIPDVIYINTEKEGI 260
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKS--KTVKDKD 177
+++A+ + + +YS+ + Y N+I TI+GGTH+ G ++++TR L +++ K ++
Sbjct: 261 PVEVAIVY-NTSYSENLHSYVNNINTIEGGTHLAGFRSAVTRVLKKYAEETAQKQIEKAK 319
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
I ++GE REGLT +ISV+V P+FEGQTKT+LGN EV V+Q+V E LT YLE HP
Sbjct: 320 IEITGEDFREGLTAVISVKVAEPQFEGQTKTKLGNSEVMGAVNQAVGEALTYYLEEHPKE 379
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K + A A +AA++AR+ V++K+ + LPGKLADCSS PEE E+F+VEGDS
Sbjct: 380 AKLIVDKVILAATARVAARKARETVQRKNPMSGGGLPGKLADCSSKVPEECELFLVEGDS 439
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL-------GVKG 350
AGGSAKQGR R QAILPLRGKILNVE+ ++++E+ N+I+ALG+ G G
Sbjct: 440 AGGSAKQGRSRATQAILPLRGKILNVEKAMWHKAFESDEVNNIIQALGIRFGVQKEGETG 499
Query: 351 EDFKKEA----LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYK 406
E KEA LRYHKI+I+ DADVDG HI TL++T FYRY + E +Y+ +PPLY+
Sbjct: 500 EVDSKEANIDKLRYHKIVIMADADVDGQHIATLIMTLFYRYFPQVIRENHLYIAMPPLYR 559
Query: 407 VERGKQVQYCYDDAE----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRM 462
+GK +YCY+D E ++K ++QR+KGLGEM P QLW+TT+NPE RM
Sbjct: 560 CRKGKTEEYCYNDREKDAFIEKYGDPTKGENSITLQRYKGLGEMNPTQLWDTTMNPETRM 619
Query: 463 LKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
LK + IE+AAEA+ +FS LMG V+ R++ I+ A +D
Sbjct: 620 LKLVTIENAAEADHIFSMLMGDDVEPRRDFIERNAKYATID 660
>gi|398814724|ref|ZP_10573402.1| DNA gyrase, B subunit [Brevibacillus sp. BC25]
gi|398035812|gb|EJL29038.1| DNA gyrase, B subunit [Brevibacillus sp. BC25]
Length = 641
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/503 (46%), Positives = 338/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ ++ G P L V + GT++ F PD +FT F++ + RIRELAF
Sbjct: 146 YYMRFKVGAPDADLAV----VGETEETGTKVTFKPDPTIFTETTVFEYEILQKRIRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN L I L+ D+ P+ + + + GG+ ++V++LN +++ LHD V+ + +G+ +
Sbjct: 202 LNKGLRITLK--DARPDHEKEESFHYEGGIIQFVEYLNKNREALHDDVIYCEGEKEGLVV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y + +AN+I T +GGTH G K +LTR +N +K +K+KD +LS
Sbjct: 260 EVALQY-NDSYVSNIYSFANNINTHEGGTHETGFKTALTRVINDYSRKFNFLKEKDPNLS 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREG+T IISV++ P+FEGQTKT+LGN E R + + + ++E +P V +
Sbjct: 319 GDDVREGITAIISVKIQEPQFEGQTKTKLGNSEARSITESVFGDRFNTFMEENPGVAKKV 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AA++AR++ R+KS L S+LPGKLADCSS ESE+FIVEGDSAGGS
Sbjct: 379 VEKALMASRAREAARKAREMTRRKSALEVSALPGKLADCSSKDASESELFIVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILPLRGK+LNVE+ + N EI+ +I ALG GV GEDF RYH
Sbjct: 439 AKMGRDRHFQAILPLRGKVLNVEKARLDKILGNNEIRAIITALGTGV-GEDFDISKARYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDG+HIRTLLLTFF+RY K L + G IY+ PPL+ +++GK + Y Y D +
Sbjct: 498 KVVIMTDADVDGSHIRTLLLTFFFRYMKQLIEAGYIYIAQPPLFSIKQGKTLHYAYTDKQ 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
+V ++ + ++QR+KGLGEM QLWETT++PE R L Q+ +EDA +A++VF +L
Sbjct: 558 RDQVLATLKAQPKPNVQRYKGLGEMNADQLWETTMDPEVRTLLQVDLEDAMDADMVFETL 617
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG V+ R+E I Q AAN+ +LD
Sbjct: 618 MGDEVEPRREFIEQYAANVRDLD 640
>gi|260887491|ref|ZP_05898754.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185]
gi|330837873|ref|YP_004412453.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185]
gi|260862778|gb|EEX77278.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185]
gi|329745637|gb|AEB98993.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185]
Length = 690
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 240/501 (47%), Positives = 339/501 (67%), Gaps = 15/501 (2%)
Query: 6 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 65
++ +G LT + ++ GT++ F PD ++FT Q+ +T+ R+RELAFLN
Sbjct: 201 RFEQGVTAAPLTV----IGETEKTGTKVHFVPDPEIFTVT-QYSFDTLKHRLRELAFLNQ 255
Query: 66 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITIDLA 124
+TI L + + + Y F+ GG+ +V+ LN K+ +H + F D +++A
Sbjct: 256 GITIRLVDKRGEGREESY---FYEGGIRSFVEHLNRKKEVIHPTPIYFNGIKDDTVVEIA 312
Query: 125 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 184
+Q+ +D+Y + + + N+I T +GGTH+ G K +LTR N +K +KDKD +LSGE
Sbjct: 313 MQY-NDSYMENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARKQGILKDKDGNLSGED 371
Query: 185 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 244
VREGLTC+IS+++ P+FEGQTKT+LGN EVR +VD V E LTEY E +P + ++ K
Sbjct: 372 VREGLTCVISLKIHEPQFEGQTKTKLGNSEVRGIVDSIVTEGLTEYFEENPAITKKVIEK 431
Query: 245 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 304
++ A +A AA++AR+L R+K+ L SSLPGKLADCS PE++EI++VEGDSAGGSAKQ
Sbjct: 432 AIMASRAREAARKARELTRRKNALEVSSLPGKLADCSIKDPEQAEIYLVEGDSAGGSAKQ 491
Query: 305 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 364
GRDRRFQAILPLRGKILNVE+ ++ N EI+ +I A G G+ +DF RY KII
Sbjct: 492 GRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGIS-DDFDIAKRRYGKII 550
Query: 365 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL-K 423
I+TDADVDG+HIRTLLLTFFYRY K L + G +Y+ PPLY++ +GK+ Y Y D EL +
Sbjct: 551 IMTDADVDGSHIRTLLLTFFYRYMKPLIERGHVYIAQPPLYQIRKGKKHWYTYSDDELAQ 610
Query: 424 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 483
K+ NA ++QR+KGLGEM P QLWETT++PE R + Q+ +EDA EA+ +F+ LMG
Sbjct: 611 KLNEVGRDNA--TVQRYKGLGEMNPEQLWETTMDPEGRTMLQVRMEDAEEADELFTILMG 668
Query: 484 ARVDTRKELIQNAANLV-NLD 503
+V+ R++ I+ A V NLD
Sbjct: 669 DKVEPRRQFIEEHAKHVRNLD 689
>gi|224536623|ref|ZP_03677162.1| hypothetical protein BACCELL_01499 [Bacteroides cellulosilyticus
DSM 14838]
gi|423223514|ref|ZP_17209983.1| DNA gyrase, B subunit [Bacteroides cellulosilyticus CL02T12C19]
gi|224521714|gb|EEF90819.1| hypothetical protein BACCELL_01499 [Bacteroides cellulosilyticus
DSM 14838]
gi|392638394|gb|EIY32235.1| DNA gyrase, B subunit [Bacteroides cellulosilyticus CL02T12C19]
Length = 653
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/512 (45%), Positives = 343/512 (66%), Gaps = 18/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y G P+ V + + D GTR +FWPD +FT + +++ +A R+RELA+
Sbjct: 148 YQQEYECGHPLYP----VKEIGTSDITGTRQQFWPDNTIFTETV-YNYEILATRMRELAY 202
Query: 63 LNPKLTIALRK-EDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN + I L D E N E F++ GL+E+V+++++ ++ L +DV+ + G
Sbjct: 203 LNAGIKITLTDLRVKDEENNAKMEVFYSEEGLKEFVRYIDSSREHLVNDVIYINTEKQGT 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+ + + +Y++ + Y N+I TI+GGTH+ G + +LTRTL + +K ++ +
Sbjct: 263 PVEVAIMYNT-SYNENIHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDNKMLEKAKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
++G+ REGLT +IS++V P+FEGQTKT+LGN EV VDQ+V E L YLE HP
Sbjct: 322 IAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVMGAVDQAVGEALNYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K + A +A +AA++AR+ V++KS + +PGKLADCSS PEE E+F+VEGDSAG
Sbjct: 382 MVVDKVILAAQARVAARKARESVQRKSPMSGGGMPGKLADCSSKDPEECELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFKK-- 355
GSAKQGRDRRFQAILPLRGKILNVE+ ++++E+ N+I+ALG+ GV GED K+
Sbjct: 442 GSAKQGRDRRFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQALGIRFGVDGEDSKEAN 501
Query: 356 -EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY K+II+TDADVDG+HI TL++T F+RY + G +Y+ PPLY ++GK +
Sbjct: 502 IDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQVIRNGYLYIATPPLYLCKKGKVEE 561
Query: 415 YCYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
YC+ D + +K ++ NA+++ QR+KGLGEM P QLW TT+NPE RMLKQ+ IE+A
Sbjct: 562 YCWTDQQRQKFIDTYGGGSENAVHT-QRYKGLGEMNPEQLWSTTMNPENRMLKQISIENA 620
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AE + +FS LMG V R++ I+ A N+D
Sbjct: 621 AEVDYIFSMLMGEDVGPRRDFIEKNATYANID 652
>gi|332638148|ref|ZP_08417011.1| DNA gyrase subunit B [Weissella cibaria KACC 11862]
Length = 648
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 236/503 (46%), Positives = 333/503 (66%), Gaps = 8/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKD-RQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
Y + RG T++ H +PVD +GT + F PD +F +D+ + R+RELA
Sbjct: 151 YAMDFERGHVKTSM--HNVPVDDAPVSRGTIVHFLPDPDIFRETTVYDYKILMNRVRELA 208
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVD-GIT 120
FLN L I++ D+ P++ + + GG++EYV +LNT+K + D + + +D GI
Sbjct: 209 FLNKGLRISI--ADNRPDEPISESFHYEGGIKEYVDFLNTNKDVIFDDPIYVEGMDNGIE 266
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
++++LQ+ D Y ML + N+I T +GGTH G K++LTR +N +K+ +K+ D +L
Sbjct: 267 VEVSLQYTDD-YHSNMLSFTNNIHTYEGGTHETGFKSALTRVINDYARKNNLLKESDDAL 325
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ VREGLT I+SV+ P+P+FEGQTKT+LGN + R VD+ E + ++ +P V
Sbjct: 326 SGDDVREGLTAIVSVKHPDPQFEGQTKTKLGNSDARTAVDRMFSETFSRFMLENPTVAKQ 385
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K + A KA LAAKRAR+ R+KS L ++LPGKLAD +S PE SE+FIVEGDSAGG
Sbjct: 386 IVEKGILAGKARLAAKRAREATRKKSGLEIANLPGKLADNTSKDPEISELFIVEGDSAGG 445
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGR+R QAILP+RGKILNVE+ + NEEI++L A+G G G +F +Y
Sbjct: 446 SAKQGRERLTQAILPIRGKILNVEKASLDKILANEEIRSLFTAMGTGF-GNEFDVTKAKY 504
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK+II+TDADVDGAHIRTLLLT YRY + L + G IY+ PPLY+V +GK VQY D
Sbjct: 505 HKLIIMTDADVDGAHIRTLLLTLIYRYMRPLLEAGYIYIAQPPLYQVRQGKFVQYLDSDE 564
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+ + + P++ IQR+KGLGEM QLWETT++P R L ++ ++DA +A++VFS
Sbjct: 565 ELEALLPTLPASPKPVIQRYKGLGEMDAEQLWETTMDPSVRRLLRVEMDDAVDADMVFSM 624
Query: 481 LMGARVDTRKELIQNAANLVNLD 503
LMG +V+ R+E I+ A LD
Sbjct: 625 LMGDKVEPRREFIEENAQYAELD 647
>gi|313893498|ref|ZP_07827068.1| DNA gyrase, B subunit [Veillonella sp. oral taxon 158 str. F0412]
gi|313441941|gb|EFR60363.1| DNA gyrase, B subunit [Veillonella sp. oral taxon 158 str. F0412]
Length = 633
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 241/499 (48%), Positives = 336/499 (67%), Gaps = 12/499 (2%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
++RG T + + + GT + F PD ++F T + F +T+ R++ELAFLN
Sbjct: 144 FARGNK----TSELHEIGKAEGTGTTVIFKPDAEIFETTV-FSFDTLKMRLQELAFLNKG 198
Query: 67 LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLAL 125
L I L D E+ + + + GGL ++ +LN +K+ ++ V+ D + +D+AL
Sbjct: 199 LRITL--SDLRQEEPRVESFHYEGGLSSFITFLNENKEVVNPTVINIENTKDDVVVDVAL 256
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
Q+ +D YS+ +L + N+I TIDGGTH+ G +A+LTRTLN G+K+ +K+ + +LSGE V
Sbjct: 257 QY-NDTYSENLLSFVNNINTIDGGTHLSGFRAALTRTLNDYGRKAGLIKENESNLSGEDV 315
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 245
REGLT ++SV+V P+FEGQTKT+LGN EV+ + D V + L + E HP I+ K+
Sbjct: 316 REGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVSDGLKTFFEEHPQDAKKIIEKA 375
Query: 246 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 305
A +A AA++ARDL R+K+ L SSLPGKLADCS +EI++VEGDSAGGSAKQG
Sbjct: 376 TMASRAREAARKARDLTRRKNALEISSLPGKLADCSEKDTSMTEIYLVEGDSAGGSAKQG 435
Query: 306 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 365
RDRR+QAILPLRGKILNVE+ + N EI+++I A G G+ GE+F RY+KIII
Sbjct: 436 RDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTGI-GEEFDITKSRYNKIII 494
Query: 366 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 425
+TDADVDGAHIRTLLLTFFYRY K L +EG IY+ PPLY++++GK Y Y DAEL
Sbjct: 495 MTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQIKKGKSQWYVYSDAELAAK 554
Query: 426 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 485
+ +IQR+KGLGEM P QLWETT+NPE R + Q+ +ED+ EA+ +F+ LMG +
Sbjct: 555 LDEVGREGI-AIQRYKGLGEMNPEQLWETTMNPENRTILQVSLEDSIEADKIFTVLMGDK 613
Query: 486 VDTRKELIQNAANLV-NLD 503
V+ R++ I++ A V NLD
Sbjct: 614 VEPRRKFIEDNAKYVRNLD 632
>gi|260890953|ref|ZP_05902216.1| DNA gyrase, B subunit [Leptotrichia hofstadii F0254]
gi|260859506|gb|EEX74006.1| DNA gyrase, B subunit [Leptotrichia hofstadii F0254]
Length = 660
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 238/527 (45%), Positives = 339/527 (64%), Gaps = 32/527 (6%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG P T + V GT +RF D ++F T + +D++ + R++ELA+
Sbjct: 139 FRQTYERGVP--TSPVEEIGVADDGTHGTVVRFKADDEIFETTV-YDYSVLESRLKELAY 195
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFR--------K 114
LN L I L E + E + E+ F GG+++++ + ++K + DV+ K
Sbjct: 196 LNKGLKIELADE-RNAENVKAEEFLFEGGIKDFLNEIIDEEKIIDDVIYMADTMQIEEAK 254
Query: 115 DVDG----------------ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 158
+V+ + +++A+ + + + +T+ + N+I T +GGTH+ G + +
Sbjct: 255 EVEAEDENGNTVIKQRGAKFVEVEIAMNYTT-SQRETVYSFVNNINTHEGGTHVSGFRTA 313
Query: 159 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 218
LTRT+N + K+ +KDK+ + G VREGL C+ISV++P P+FEGQTKT+LGN EV +
Sbjct: 314 LTRTINDIAKQMNLIKDKNGTFQGTDVREGLVCVISVKIPEPQFEGQTKTKLGNSEVTGI 373
Query: 219 VDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLA 278
V V L YLE HP + I+ K + +A AAK+AR+LV +K+ L SLPGKLA
Sbjct: 374 VSNIVGSNLKFYLEDHPKAAEKIIEKMAMSKRAREAAKKARELVLRKNTLEVGSLPGKLA 433
Query: 279 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQ 338
DCSS P ESEIFIVEG+SAGGSAKQGRDRRFQAILPLRGKILNVE+ +N EI+
Sbjct: 434 DCSSKDPAESEIFIVEGNSAGGSAKQGRDRRFQAILPLRGKILNVEKSGVHKALENAEIR 493
Query: 339 NLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIY 398
+I A G G GE+ + LRYHKI+I+TDADVDGAHIRTL+LTFFYR+ + L +EG IY
Sbjct: 494 AMITAFGAGF-GEEMDLKKLRYHKIVIMTDADVDGAHIRTLMLTFFYRHLRELINEGYIY 552
Query: 399 VGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNAL-YSIQRFKGLGEMMPVQLWETTLN 457
+ PPLYK++ GK ++Y Y D ++K+V Y+IQR+KGLGEM P QLWETTL+
Sbjct: 553 IAQPPLYKIQAGKAIRYAYSDDQMKQVTRVLEGEGRKYTIQRYKGLGEMNPEQLWETTLD 612
Query: 458 PEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV-NLD 503
PE R L ++ +EDA+ A+ +F+ LMG +V+ R++ I++ AN V NLD
Sbjct: 613 PEVRTLLKVSMEDASYADKMFNILMGDKVEPRRKFIEDNANYVRNLD 659
>gi|383761128|ref|YP_005440110.1| DNA gyrase subunit B [Caldilinea aerophila DSM 14535 = NBRC 104270]
gi|381381396|dbj|BAL98212.1| DNA gyrase subunit B [Caldilinea aerophila DSM 14535 = NBRC 104270]
Length = 649
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/509 (45%), Positives = 335/509 (65%), Gaps = 15/509 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG PVT + V+ D GT F D +F A++++++T+A R RE+AF
Sbjct: 147 YRQRYERGVPVTEV--EVIGTCDPDDTGTIQTFLRDDTIFQ-ALEYNYHTLATRFREMAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
L + I E +DP + ++F GG++ +V++LN +++ +++ + +V+G I+
Sbjct: 204 LTRGVDITFIDERTDPPRE--TNFYFEGGVKSFVRYLNRNREVINEPIYIDTEVEGTQIE 261
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
A+Q+ +D++++++ +AN+I T DGGTH+ G++ ++TR +N +K +KDK+ + +G
Sbjct: 262 AAIQY-TDSFAESVFAFANTINTPDGGTHLTGLRTAVTRIINDYARKQGMIKDKEENFTG 320
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
E R+G+T IISV+V P+FEGQ K +L N EVR V+ +V E + ++E +P +I+
Sbjct: 321 EDTRQGMTAIISVKVMEPQFEGQNKLKLLNNEVRYHVETAVAEVMGRWMEENPRDARAIV 380
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K +A +A AAK+ARDLV +KS L S +LPGKLADCSS PEE E++IVEGDSAGG+A
Sbjct: 381 EKCRTAYRAREAAKKARDLVIRKSALESLTLPGKLADCSSRNPEECELYIVEGDSAGGTA 440
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQGRDRRFQAILPLRGKILN+E+ N+EIQ LI ALG + GE+F LRYH+
Sbjct: 441 KQGRDRRFQAILPLRGKILNIEKTSLDKALANKEIQALITALGTNI-GENFDLSGLRYHR 499
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKV-----ERGK---QVQ 414
II++TDADVDGAHIRTLLLTFFYRY + L G +Y+ PPLY+V E GK +
Sbjct: 500 IILMTDADVDGAHIRTLLLTFFYRYMEPLVANGHLYIAQPPLYRVTVTRHENGKVKRTSE 559
Query: 415 YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
Y YDD L+ ++ + QR+KGLGEM QLWETT+NP R + ++ +EDAAEA
Sbjct: 560 YVYDDKALEALRKELGEANVKVEQRYKGLGEMNEEQLWETTMNPANRTILRVSVEDAAEA 619
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLD 503
+ F LMG+ V R+ IQ AN LD
Sbjct: 620 DRTFDMLMGSSVPPRRRFIQTHANQARLD 648
>gi|293370455|ref|ZP_06617008.1| DNA gyrase, B subunit [Bacteroides ovatus SD CMC 3f]
gi|292634447|gb|EFF52983.1| DNA gyrase, B subunit [Bacteroides ovatus SD CMC 3f]
Length = 652
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/511 (45%), Positives = 342/511 (66%), Gaps = 17/511 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y GKP+ + V V + D GTR +FWPD +FT + +D+ +A R+RELA+
Sbjct: 148 YQQEYEIGKPLYS----VKEVGTADITGTRQQFWPDGTIFTETV-YDYKILASRLRELAY 202
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I+L R+ ++ + +++ GL E+V+++ + ++ L +DV+ + GI
Sbjct: 203 LNAGLRISLTDRRVVNEDGSFKSEQFYSEEGLREFVRFIESSREHLINDVIYLNSEKQGI 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I++A+ + + +S+ + Y N+I TI+GGTH+ G + +LTRTL + SK ++ +
Sbjct: 263 PIEVAIMYNT-GFSENVHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDSKMLEKVKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT +ISV+V P+FEGQTKT+LGN EV VDQ+V E L YLE HP
Sbjct: 322 ISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEVLAYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A A AA++AR++V++KS + LPGKLADCS P + E+F+VEGDSAG
Sbjct: 382 TIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDPSKCELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA-- 357
G+AKQGR+R FQAILPLRGKILNVE+ +++EI+N+ ALG+ + ++ KEA
Sbjct: 442 GTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYTALGVTIGTDEDSKEANI 501
Query: 358 --LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
LRYHKIII+TDADVDG+HI TL++TFF+RY + G +Y+ PPLY ++GK +Y
Sbjct: 502 QKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQVIQNGYLYIATPPLYLCKKGKVEEY 561
Query: 416 CYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
C+ DA+ +K ++ NA+++ QR+KGLGEM QLWETT++PE RMLKQ+ I++AA
Sbjct: 562 CWTDAQRQKFIDTYGGGSENAIHT-QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAA 620
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ +FS LMG V R+E I+ A N+D
Sbjct: 621 EADYIFSMLMGEDVGPRREFIEENATYANID 651
>gi|393786129|ref|ZP_10374267.1| DNA gyrase, B subunit [Bacteroides nordii CL02T12C05]
gi|392660493|gb|EIY54105.1| DNA gyrase, B subunit [Bacteroides nordii CL02T12C05]
Length = 655
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 236/511 (46%), Positives = 338/511 (66%), Gaps = 17/511 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y GKP+ V V + GTR +FWPD +FT + + + +AGR+RELA+
Sbjct: 151 YQQEYEIGKPLYP----VKEVGESEHTGTRQQFWPDNTIFTETV-YKYEILAGRMRELAY 205
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN K+T+ R+ +D K + ++ GL+E+V++L + + L +DV+ + GI
Sbjct: 206 LNAGIKITLTDRRVVNDEGKFKQEIFYSEEGLKEFVRYLESSRDHLINDVIYLNTEKQGI 265
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I+LA+ + + +S+ + Y N+I TI+GGTH+ G + +LTRTL + SK ++ +
Sbjct: 266 PIELAIMYNT-GFSENVHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDSKMLEKVKVE 324
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT +ISV+V P+FEGQTKT+LGN EV VDQ+V E L YLE HP
Sbjct: 325 ISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEALAYYLEEHPKEAK 384
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A A AA++AR++V++KS + LPGKLADCS P++ E+F+VEGDSAG
Sbjct: 385 LIVDKVVLAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDPQKCELFLVEGDSAG 444
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA-- 357
G+AKQGR+R FQAILPLRGKILNVE+ ++EEI+N+ ALG+ + E+ K A
Sbjct: 445 GTAKQGRNRAFQAILPLRGKILNVEKAMYHKALESEEIRNIYTALGVTIGTEEDSKAANI 504
Query: 358 --LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
LRYHKIII+TDADVDG+HI TL++TFF+RY + G +Y+ PPLY ++GK +Y
Sbjct: 505 DKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLYIATPPLYLCKKGKVEEY 564
Query: 416 CYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
C+ DA+ + ++ NA+++ QR+KGLGEM QLWETT++PE RMLKQ+ IE+AA
Sbjct: 565 CWTDAQRQAFIDTYGGGSENAVHT-QRYKGLGEMNAQQLWETTMDPENRMLKQVNIENAA 623
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ +FS LMG V R+E I+ A N+D
Sbjct: 624 EADFIFSMLMGEDVGPRREFIEENATYANID 654
>gi|160883910|ref|ZP_02064913.1| hypothetical protein BACOVA_01884 [Bacteroides ovatus ATCC 8483]
gi|336417360|ref|ZP_08597684.1| DNA gyrase, B subunit [Bacteroides ovatus 3_8_47FAA]
gi|423290605|ref|ZP_17269454.1| DNA gyrase, B subunit [Bacteroides ovatus CL02T12C04]
gi|423294128|ref|ZP_17272255.1| DNA gyrase, B subunit [Bacteroides ovatus CL03T12C18]
gi|156110640|gb|EDO12385.1| DNA gyrase, B subunit [Bacteroides ovatus ATCC 8483]
gi|335936106|gb|EGM98046.1| DNA gyrase, B subunit [Bacteroides ovatus 3_8_47FAA]
gi|392665258|gb|EIY58786.1| DNA gyrase, B subunit [Bacteroides ovatus CL02T12C04]
gi|392676624|gb|EIY70055.1| DNA gyrase, B subunit [Bacteroides ovatus CL03T12C18]
Length = 652
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/511 (45%), Positives = 338/511 (66%), Gaps = 17/511 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y GKP+ + V V + D GTR +FWPD +FT + +D+ +A R+RELA+
Sbjct: 148 YQQEYEIGKPLYS----VKEVGTADITGTRQQFWPDNTIFTETV-YDYKILASRLRELAY 202
Query: 63 LNPKLTIALRKEDSDPEKNQYN--EYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I L E + +++ GL E+V+++ + ++ L +DV+ + GI
Sbjct: 203 LNAGLRITLTDRRVVNEDGSFKGEQFYSEEGLREFVRFIESSREHLINDVIYLNSEKQGI 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I++A+ + + +S+ + Y N+I TI+GGTH+ G + +LTRTL + SK ++ +
Sbjct: 263 PIEVAIMYNT-GFSENVHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDSKMLEKVKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT +ISV+V P+FEGQTKT+LGN EV VDQ+V E L YLE HP
Sbjct: 322 ISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEVLAYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A A AA++AR++V++KS + LPGKLADCS P + E+F+VEGDSAG
Sbjct: 382 TIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDPSKCELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA-- 357
G+AKQGR+R FQAILPLRGKILNVE+ +++EI+N+ ALG+ + ++ KEA
Sbjct: 442 GTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYTALGVTIGTDEDSKEANI 501
Query: 358 --LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
LRYHKIII+TDADVDG+HI TL++TFF+RY + G +Y+ PPLY ++GK +Y
Sbjct: 502 QKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLYIATPPLYLCKKGKVEEY 561
Query: 416 CYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
C+ DA+ +K ++ NA+++ QR+KGLGEM QLWETT++PE RMLKQ+ I++AA
Sbjct: 562 CWTDAQRQKFIDTYGGGSENAIHT-QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAA 620
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ +FS LMG V R+E I+ A N+D
Sbjct: 621 EADYIFSMLMGEDVGPRREFIEENATYANID 651
>gi|295398131|ref|ZP_06808180.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aerococcus viridans
ATCC 11563]
gi|294973650|gb|EFG49428.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aerococcus viridans
ATCC 11563]
Length = 689
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/502 (46%), Positives = 330/502 (65%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ++ +G V+ V D GT + F PD ++FT F+ + R+RELAF
Sbjct: 195 YHQEFRQGAIVSD----VEQTGDTDTHGTVVHFKPDAEIFTETTTFEFEVLNRRVRELAF 250
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKD-VDGITI 121
LN L I+L D+ E ++ Y + GG++EY++++N DK L + + +D DGI +
Sbjct: 251 LNKGLRISLM--DARSENHKTASYHYEGGIKEYIEYMNKDKDVLFEQPIYLEDEQDGIEV 308
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D + +L +AN+I T +GG H G K +LTR +N+ + K +K+ + +L+
Sbjct: 309 EVALQY-TDGFHSNILSFANNIHTFEGGMHESGAKTALTRVINNYARSQKLIKENEDNLT 367
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG+T I+S+R P+P+FEGQTK +LGN EVR + D + +L +P + I
Sbjct: 368 GEDVREGITLIVSIRHPDPQFEGQTKMKLGNSEVRTITDNLFATHFETFLLENPQIARRI 427
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K A KA LAAKRAR++ R+KS L S+LPGKLADCSS PEESE+FIVEG+SAGGS
Sbjct: 428 VDKGTVASKARLAAKRAREMTRKKSGLEISNLPGKLADCSSRNPEESELFIVEGNSAGGS 487
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R FQAILP+RGKILNVE+ + NEEI++L A+G G + DF RYH
Sbjct: 488 AKQGRSRHFQAILPIRGKILNVEKASMDRILSNEEIRSLFTAMGTGWQN-DFDITKARYH 546
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIR LLLT YRY + + D G +Y+ VPPLY+V +GK++ Y D +
Sbjct: 547 KLVIMTDADVDGAHIRALLLTLIYRYMRPILDAGYVYIAVPPLYQVRQGKKIVYLDTDKQ 606
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L++ + P+ +IQR+KGLGEM QLWETT++P R L Q+ ++DA EA+ + + L
Sbjct: 607 LEEYLQTIPATPKPAIQRYKGLGEMDAEQLWETTMDPANRTLLQVNVDDAVEADKIINML 666
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I+ A N+D
Sbjct: 667 MGDHVEPRRDFIEENATYANID 688
>gi|254166743|ref|ZP_04873597.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
gi|197624353|gb|EDY36914.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
Length = 648
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 256/520 (49%), Positives = 348/520 (66%), Gaps = 34/520 (6%)
Query: 3 YHQKYSRGKPVTTLTCHVLPV------------DSKDRQ-----GTRIRFWPDKQVFTTA 45
Y Q Y RGKP C V V D D + GT IRF PD ++F T
Sbjct: 143 YFQWYERGKP----QCDVHVVGKIENGNFVWIEDGHDEKFKYSRGTYIRFKPDAEIFETT 198
Query: 46 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 105
+F ++ + ++R+LAFLN + I L E S ++ + + GG+ E+V++LN P
Sbjct: 199 -EFKYSIVKKKLRDLAFLNRGIEITLEDERSGKKE----VFKYDGGIVEFVKFLNEGYNP 253
Query: 106 LH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 164
+H DVV + + DGI ++ A+Q+ +D+ S+ +L + N+I T++GGTH+ G +++LT+ +N
Sbjct: 254 IHRDVVYGKDEQDGIIVEFAMQY-NDSTSENLLAFVNTIHTVEGGTHVSGFRSALTKVIN 312
Query: 165 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 224
K +K D SL GE VREGLT +I V+ PNP+FEGQTK +LGN EV+ VV V
Sbjct: 313 DFAKSRNLLKGID-SLQGEDVREGLTAVIHVKHPNPQFEGQTKAKLGNSEVKGVVFSIVN 371
Query: 225 EYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTT 284
+ L+ Y E HPDV +I+SK+++A +A +AA++AR+L R+K L S LPGKLADCS
Sbjct: 372 KILSTYFEEHPDVATNIVSKAIAAARARIAARKARELARRKGYLESLDLPGKLADCSEED 431
Query: 285 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 344
PE +E+FIVEGDSAGGSAKQ RDR FQAILPLRGKILNVE+ ++KN EI+ LI A+
Sbjct: 432 PERAELFIVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARIDKVFKNNEIRALISAI 491
Query: 345 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 404
G GV+ EDF LRY KIII+TDADVDGAHIRTLLLTFFYRY L ++G IY+ PL
Sbjct: 492 GTGVR-EDFDYSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMPELIEKGHIYIAQAPL 550
Query: 405 YKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLK 464
Y++++GK + Y Y D E ++ NA S+QRFKGLGEM P QLW+TT+NPE R L
Sbjct: 551 YRIQKGKNIYYVYSDEEKEEKLRE-LGNA--SVQRFKGLGEMNPQQLWDTTMNPETRRLI 607
Query: 465 QLVIEDAAEANVVFSSLMGARVDTRKE-LIQNAANLVNLD 503
++ IEDAAEA+ +FS LMG +V R+E +IQ+A ++N+D
Sbjct: 608 RVTIEDAAEADRLFSILMGEQVGPRREFIIQHAKEVMNID 647
>gi|424787413|ref|ZP_18214179.1| DNA gyrase, B subunit [Streptococcus intermedius BA1]
gi|422113708|gb|EKU17435.1| DNA gyrase, B subunit [Streptococcus intermedius BA1]
Length = 648
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/508 (45%), Positives = 336/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG+ V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 148 HFQEYRRGQVVADLKI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 204 LNRGLRISITDKREGLE--QTKDYHYEGGIASYVQYINENKDVIFENPIYTDGEMDDITV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 262 EVAIQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 321 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVAKKI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P E+E+FIVEGDSAGGS
Sbjct: 381 IEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPHETELFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 441 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVNKARYQ 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY-----C 416
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V+
Sbjct: 500 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYIAQPPIYGVKVGSEVKEYIQPGV 559
Query: 417 YDDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ EL+ + + SIQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 560 NQEEELQLALERYSEGRSKPSIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 619
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 620 KIFDMLMGDRVEPRREFIEENAVYSTLD 647
>gi|289596495|ref|YP_003483191.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
gi|289534282|gb|ADD08629.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
Length = 644
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 256/520 (49%), Positives = 348/520 (66%), Gaps = 34/520 (6%)
Query: 3 YHQKYSRGKPVTTLTCHVLPV------------DSKDRQ-----GTRIRFWPDKQVFTTA 45
Y Q Y RGKP C V V D D + GT IRF PD ++F T
Sbjct: 139 YFQWYERGKP----QCDVHVVGKIENGNFVWIEDGHDEKFKYSRGTYIRFKPDAEIFETT 194
Query: 46 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 105
+F ++ + ++R+LAFLN + I L E S ++ + + GG+ E+V++LN P
Sbjct: 195 -EFKYSIVKKKLRDLAFLNRGIEITLEDERSGKKE----VFKYDGGIVEFVKFLNEGYNP 249
Query: 106 LH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 164
+H DVV + + DGI ++ A+Q+ +D+ S+ +L + N+I T++GGTH+ G +++LT+ +N
Sbjct: 250 IHRDVVYGKDEQDGIIVEFAMQY-NDSTSENLLAFVNTIHTVEGGTHVSGFRSALTKVIN 308
Query: 165 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 224
K +K D SL GE VREGLT +I V+ PNP+FEGQTK +LGN EV+ VV V
Sbjct: 309 DFAKSRNLLKGID-SLQGEDVREGLTAVIHVKHPNPQFEGQTKAKLGNSEVKGVVFSIVN 367
Query: 225 EYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTT 284
+ L+ Y E HPDV +I+SK+++A +A +AA++AR+L R+K L S LPGKLADCS
Sbjct: 368 KILSTYFEEHPDVATNIVSKAIAAARARIAARKARELARRKGYLESLDLPGKLADCSEED 427
Query: 285 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 344
PE +E+FIVEGDSAGGSAKQ RDR FQAILPLRGKILNVE+ ++KN EI+ LI A+
Sbjct: 428 PERAELFIVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARIDKVFKNNEIRALISAI 487
Query: 345 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 404
G GV+ EDF LRY KIII+TDADVDGAHIRTLLLTFFYRY L ++G IY+ PL
Sbjct: 488 GTGVR-EDFDYSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMPELIEKGHIYIAQAPL 546
Query: 405 YKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLK 464
Y++++GK + Y Y D E ++ NA S+QRFKGLGEM P QLW+TT+NPE R L
Sbjct: 547 YRIQKGKNIYYVYSDEEKEEKLRE-LGNA--SVQRFKGLGEMNPQQLWDTTMNPETRRLI 603
Query: 465 QLVIEDAAEANVVFSSLMGARVDTRKE-LIQNAANLVNLD 503
++ IEDAAEA+ +FS LMG +V R+E +IQ+A ++N+D
Sbjct: 604 RVTIEDAAEADRLFSILMGEQVGPRREFIIQHAKEVMNID 643
>gi|237720397|ref|ZP_04550878.1| DNA gyrase subunit B [Bacteroides sp. 2_2_4]
gi|262405441|ref|ZP_06081991.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_22]
gi|294646223|ref|ZP_06723877.1| DNA gyrase, B subunit [Bacteroides ovatus SD CC 2a]
gi|298480563|ref|ZP_06998760.1| DNA gyrase, B subunit [Bacteroides sp. D22]
gi|336404477|ref|ZP_08585172.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_30]
gi|345510630|ref|ZP_08790194.1| DNA gyrase, B subunit [Bacteroides sp. D1]
gi|423214870|ref|ZP_17201398.1| DNA gyrase, B subunit [Bacteroides xylanisolvens CL03T12C04]
gi|229442648|gb|EEO48439.1| DNA gyrase, B subunit [Bacteroides sp. D1]
gi|229450148|gb|EEO55939.1| DNA gyrase subunit B [Bacteroides sp. 2_2_4]
gi|262356316|gb|EEZ05406.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_22]
gi|292638441|gb|EFF56805.1| DNA gyrase, B subunit [Bacteroides ovatus SD CC 2a]
gi|295086258|emb|CBK67781.1| DNA gyrase subunit B [Bacteroides xylanisolvens XB1A]
gi|298273384|gb|EFI14948.1| DNA gyrase, B subunit [Bacteroides sp. D22]
gi|335942274|gb|EGN04121.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_30]
gi|392692133|gb|EIY85371.1| DNA gyrase, B subunit [Bacteroides xylanisolvens CL03T12C04]
Length = 652
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/511 (45%), Positives = 342/511 (66%), Gaps = 17/511 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y GKP+ + V V + D GTR +FWPD +FT + +D+ +A R+RELA+
Sbjct: 148 YQQEYEIGKPLYS----VKEVGTADITGTRQQFWPDGTIFTETV-YDYKILASRLRELAY 202
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I+L R+ ++ + +++ GL E+V+++ + ++ L +DV+ + GI
Sbjct: 203 LNAGLRISLTDRRVVNEDGSFKSEQFYSEEGLREFVRFIESSREHLINDVIYLNSEKQGI 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I++A+ + + +S+ + Y N+I TI+GGTH+ G + +LTRTL + SK ++ +
Sbjct: 263 PIEVAIMYNT-GFSENVHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDSKMLEKVKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT +ISV+V P+FEGQTKT+LGN EV VDQ+V E L YLE HP
Sbjct: 322 ISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEVLAYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A A AA++AR++V++KS + LPGKLADCS P + E+F+VEGDSAG
Sbjct: 382 TIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDPSKCELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA-- 357
G+AKQGR+R FQAILPLRGKILNVE+ +++EI+N+ ALG+ + ++ KEA
Sbjct: 442 GTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYTALGVTIGTDEDSKEANI 501
Query: 358 --LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
LRYHKIII+TDADVDG+HI TL++TFF+RY + G +Y+ PPLY ++GK +Y
Sbjct: 502 QKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQVIQNGYLYIATPPLYLCKKGKVEEY 561
Query: 416 CYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
C+ DA+ +K ++ NA+++ QR+KGLGEM QLWETT++PE RMLKQ+ I++AA
Sbjct: 562 CWTDAQRQKFIDTYGGGSENAIHT-QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAA 620
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ +FS LMG V R+E I+ A N+D
Sbjct: 621 EADYIFSMLMGEDVGPRREFIEENATYANID 651
>gi|392428435|ref|YP_006469446.1| DNA gyrase B subunit [Streptococcus intermedius JTH08]
gi|419777414|ref|ZP_14303326.1| DNA gyrase, B subunit [Streptococcus intermedius SK54]
gi|296531195|dbj|BAJ08046.1| DNA gyrase subunit B [Streptococcus intermedius]
gi|383844894|gb|EID82304.1| DNA gyrase, B subunit [Streptococcus intermedius SK54]
gi|391757581|dbj|BAM23198.1| DNA gyrase B subunit [Streptococcus intermedius JTH08]
Length = 648
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/508 (45%), Positives = 336/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG+ V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 148 HFQEYRRGQVVADLKI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 204 LNRGLRISITDKREGLE--QTKDYHYEGGIASYVQYINENKDVIFENPIYTDGEMDDITV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 262 EVAIQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 321 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVAKKI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P E+E+FIVEGDSAGGS
Sbjct: 381 IEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPHETELFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 441 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVNKTRYQ 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY-----C 416
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V+
Sbjct: 500 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYIAQPPIYGVKVGSEVKEYIQPGV 559
Query: 417 YDDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ EL+ + + SIQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 560 NQEEELQLALERYSEGRSKPSIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 619
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 620 KIFDMLMGDRVEPRREFIEENAVYSTLD 647
>gi|422865768|ref|ZP_16912393.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK1058]
gi|327489313|gb|EGF21106.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
sanguinis SK1058]
Length = 649
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/508 (45%), Positives = 338/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 149 HYQEYRRGHVVADLEI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 205 LNRGLRISITDKRDGME--QVKDYHYEGGIASYVQYINENKDVIFETPIYTDGEMDDITV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 263 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 322 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVARKI 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P+E+E+FIVEGDSAGGS
Sbjct: 382 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPQETELFIVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + N EI++L A+G G G DF RY
Sbjct: 442 AKSGRNREFQAILPIRGKILNVEKASMDKILANGEIRSLFTAMGTGF-GADFDVSKARYQ 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V +Y A
Sbjct: 501 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVYIAQPPIYGVKVGSEVKEYIQPGA 560
Query: 421 ----ELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+ + + + +IQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 561 NQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 620
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 621 KIFDMLMGDRVEPRREFIEENAVYSTLD 648
>gi|420157440|ref|ZP_14664274.1| DNA gyrase, B subunit [Clostridium sp. MSTE9]
gi|394756146|gb|EJF39271.1| DNA gyrase, B subunit [Clostridium sp. MSTE9]
Length = 647
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 245/507 (48%), Positives = 344/507 (67%), Gaps = 14/507 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++ RG VT LT D GT +RF PD ++F +I+F+++ + R+RE AF
Sbjct: 148 YSQRFERGVAVTELT----RTGDSDHTGTVVRFQPDSEIFQESIEFEYDILQNRLREQAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK--KPLHDVVGFRKDV---D 117
LN + I L +D +PE +N Y + GG+ +V++LN + + +H+ V + V D
Sbjct: 204 LNAGIHIEL-DDDRNPEHLVHNVYQYEGGIRSFVEYLNKKRSLEVIHENVIYFDAVAADD 262
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
T ++A+Q+ +++Y++ ML +AN+I T DGGTH +G K +LTR +N +K +K+ D
Sbjct: 263 NATAEVAMQY-NNSYNELMLSFANNIHTTDGGTHEDGFKRALTRIMNDYARKYNILKEND 321
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+LSGE VREGLT IISV++ +FEGQTK RLGN E+ +V Q + + LT YLE +P V
Sbjct: 322 KNLSGEDVREGLTVIISVKLKEAQFEGQTKARLGNTEIAGLVSQMMSDKLTTYLEENPSV 381
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+I K+LSA +A AAK+AR+LVR+KS L S++LPGKLADC S PEE+EI+IVEGDS
Sbjct: 382 ARAIFEKALSAARAREAAKKARELVRRKSALESAALPGKLADCQSRNPEETEIYIVEGDS 441
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAK GRDR+FQAILPL GK+LNVE+ +Y NE++ ++ ALG G+ GE+F
Sbjct: 442 AGGSAKGGRDRKFQAILPLWGKMLNVEKARLDKVYGNEKLMPVVTALGCGL-GEEFDLSK 500
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRY KIII+ DADVDG+HIRTLLLTFF+R+ + L ++G IY+ PPLY++ RGK +Y Y
Sbjct: 501 LRYGKIIIMADADVDGSHIRTLLLTFFFRFMRPLVEQGHIYLAQPPLYRITRGKNHRYAY 560
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
D + + + Y IQR+KGLGEM QLWETT++PE R + ++ +EDAA A+
Sbjct: 561 SDKQRDAIMAELGGTN-YDIQRYKGLGEMDAQQLWETTMDPETRTMLKVEMEDAAAADET 619
Query: 478 FSSLMGARVDTRKELI-QNAANLVNLD 503
F+ LMG +V+ R+ I QNA + NLD
Sbjct: 620 FTILMGDKVEPRRLFIEQNARFVSNLD 646
>gi|313147892|ref|ZP_07810085.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|423281169|ref|ZP_17260080.1| DNA gyrase, B subunit [Bacteroides fragilis HMW 610]
gi|424665894|ref|ZP_18102930.1| DNA gyrase, B subunit [Bacteroides fragilis HMW 616]
gi|313136659|gb|EFR54019.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|404574147|gb|EKA78898.1| DNA gyrase, B subunit [Bacteroides fragilis HMW 616]
gi|404583333|gb|EKA88014.1| DNA gyrase, B subunit [Bacteroides fragilis HMW 610]
Length = 652
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/511 (45%), Positives = 340/511 (66%), Gaps = 17/511 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y GKP+ V V + D GT+ +FWPD +FT + +D+ +A R+RELA+
Sbjct: 148 YQQEYEIGKPLYA----VKEVGTADHTGTKQQFWPDDSIFTETV-YDYKILASRLRELAY 202
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I+L R+ ++ ++ ++ GL E+V+++ + ++ L +DV+ + I
Sbjct: 203 LNAGLRISLTDRRVINEDGSFKHETFYSEEGLREFVRFIESSREHLINDVIYLNTEKQNI 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I++A+ + + +S+ + Y N+I TI+GGTH+ G + +LTRTL + SK ++ I
Sbjct: 263 PIEVAIMYNT-GFSENIHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDSKMLEKVKIE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT +ISV+V P+FEGQTKT+LGN EV VDQ+V E L YLE HP
Sbjct: 322 ISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEVLNYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A A AA++AR++V++KS + LPGKLADCS P++ E+F+VEGDSAG
Sbjct: 382 AIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDPQKCELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA-- 357
G+AKQGR+R FQAILPLRGKILNVE+ ++EEI+N+ ALG+ + E+ K A
Sbjct: 442 GTAKQGRNRAFQAILPLRGKILNVEKAMYHKALESEEIRNIYTALGVTIGTEEDSKAANI 501
Query: 358 --LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
LRYHKIII+TDADVDG+HI TL++TFF+RY + G +Y+ PPLY ++GK +Y
Sbjct: 502 DKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLYIATPPLYLCKKGKVEEY 561
Query: 416 CYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
C+ DA+ +K ++ NA+++ QR+KGLGEM QLWETT++PE RMLKQ+ I++AA
Sbjct: 562 CWTDAQRQKFIDTYGGGSENAIHT-QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAA 620
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ +FS LMG V R+E I+ A N+D
Sbjct: 621 EADYIFSMLMGEDVGPRREFIEENATYANID 651
>gi|397690038|ref|YP_006527292.1| DNA gyrase subunit B [Melioribacter roseus P3M]
gi|395811530|gb|AFN74279.1| DNA gyrase subunit B [Melioribacter roseus P3M]
Length = 663
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/531 (46%), Positives = 346/531 (65%), Gaps = 44/531 (8%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDS-----KDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRI 57
Y Q+Y RG P PV K + GT+I F PDK++F T ++F + +A R+
Sbjct: 146 YTQEYKRGVPQG-------PVKETGTYKKGKSGTKITFKPDKEIFKT-VKFKYEIVAERL 197
Query: 58 RELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVD 117
RELA+LN +T+ L E+ E+ +Y F GGL ++V++L+ + PLH + + +
Sbjct: 198 RELAYLNKDVTMILIDENEGIEE----KYHFKGGLIDFVRYLDEQRNPLHKPIYIEGEKE 253
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G +++A ++ SD+Y++ + Y N+I TI+GGTH+ G + +LTRT N+ K+K +K+
Sbjct: 254 GTPVEVAFEY-SDSYNENVHTYVNNINTIEGGTHLVGFRTALTRTFNNYAYKNKLIKENS 312
Query: 178 -ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
ISL+GE +EGLT +ISV+V P+FEGQTKT+LGN EV+ +V+ V E L EYLE +P
Sbjct: 313 KISLTGEDFKEGLTAVISVKVMEPQFEGQTKTKLGNSEVKSIVESIVGEKLAEYLEENPS 372
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
V I+ KS+ A +A AA++AR+L+R+K+ L S +LPGKLADCS PE EI+IVEGD
Sbjct: 373 VAKKIIEKSVKAAEAREAARKARELIRRKNALDSLNLPGKLADCSINDPEHCEIYIVEGD 432
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SAGGSAKQGRDRRFQAILP++GKI+NVE+ + +N+EIQ +I A+G G+ GEDF
Sbjct: 433 SAGGSAKQGRDRRFQAILPIKGKIINVEKAKINKILENQEIQAIISAIGAGI-GEDFDAS 491
Query: 357 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 416
RY KII++TDADVDG+HIRTLLLTFFYR+ K L ++G +Y+ PPLYK+++GK+ Y
Sbjct: 492 KSRYGKIILMTDADVDGSHIRTLLLTFFYRHMKDLINQGKVYIAQPPLYKIKKGKEEFYA 551
Query: 417 YDDAE----LKKVKSSFPSNALYS--------------------IQRFKGLGEMMPVQLW 452
+DD E LK++K I R+KGLGEM P QLW
Sbjct: 552 FDDEERDAILKRLKGDVKGKEEEEEIADVEETEEQTQKQMKGIVISRYKGLGEMNPEQLW 611
Query: 453 ETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
+TT+NPE R + Q+ +E AA A+ +F +LMG V+ R+E I+ A LD
Sbjct: 612 QTTMNPETRTILQVNLESAATADKIFETLMGDAVEPRREFIEKHAKYAKLD 662
>gi|319939445|ref|ZP_08013805.1| DNA gyrase subunit B [Streptococcus anginosus 1_2_62CV]
gi|418963940|ref|ZP_13515771.1| DNA gyrase, B subunit [Streptococcus anginosus subsp. whileyi CCUG
39159]
gi|421490001|ref|ZP_15937376.1| DNA gyrase, B subunit [Streptococcus anginosus SK1138]
gi|319811431|gb|EFW07726.1| DNA gyrase subunit B [Streptococcus anginosus 1_2_62CV]
gi|383342468|gb|EID20685.1| DNA gyrase, B subunit [Streptococcus anginosus subsp. whileyi CCUG
39159]
gi|400374014|gb|EJP26938.1| DNA gyrase, B subunit [Streptococcus anginosus SK1138]
Length = 648
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 235/508 (46%), Positives = 336/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 148 HFQEYRRGHVVADLEI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 204 LNRGLRISITDKREGLE--QTKDYHYEGGIASYVQYINENKDVIFENPIYTDGEMDDITV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 262 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 321 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVAKKI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P E+E+FIVEGDSAGGS
Sbjct: 381 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPHETELFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 441 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V +Y A
Sbjct: 500 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYIAQPPIYGVKVGSEVKEYIQPGA 559
Query: 421 ----ELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+ + + SIQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 560 NQEEELQLALERYSEGRSKPSIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 619
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 620 KIFDMLMGDRVEPRREFIEENAVYSTLD 647
>gi|315221787|ref|ZP_07863699.1| DNA gyrase, B subunit [Streptococcus anginosus F0211]
gi|315189020|gb|EFU22723.1| DNA gyrase, B subunit [Streptococcus anginosus F0211]
Length = 648
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 235/508 (46%), Positives = 336/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 148 HFQEYRRGHVVADLEI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 204 LNRGLRISITDKREGLE--QTKDYHYEGGIASYVQYINENKDVIFENPIYTDGEMDDITV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 262 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 321 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVAKKI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P E+E+FIVEGDSAGGS
Sbjct: 381 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPHETELFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 441 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V +Y A
Sbjct: 500 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYIAQPPIYGVKVGSEVKEYIQPGA 559
Query: 421 ----ELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
EL+ + + SIQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 560 NQEEELQLALERYSEGRSKPSIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 619
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 620 KIFDMLMGDRVEPRREFIEENAVYSTLD 647
>gi|124485239|ref|YP_001029855.1| DNA gyrase subunit B [Methanocorpusculum labreanum Z]
gi|124362780|gb|ABN06588.1| DNA gyrase subunit B [Methanocorpusculum labreanum Z]
Length = 651
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 243/481 (50%), Positives = 329/481 (68%), Gaps = 19/481 (3%)
Query: 30 GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL---RKEDSDPEKNQYNEY 86
GTRI F+PD +F T +FD++ +A R RELA+LN L I + R DSD +
Sbjct: 182 GTRITFYPDGSIFETT-EFDYDVLAHRFRELAYLNKGLEIHVEDHRTGDSDT-------F 233
Query: 87 FFAGGLEEYVQWLNTDKKPLHD---VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSI 143
+ GGL ++V LN K+ LH V DV+ I +++ALQ+ +D Y + + Y NS+
Sbjct: 234 CYEGGLRQFVAHLNEGKELLHPEPIYVDKSDDVNKIEVEVALQY-NDTYGEILYTYVNSV 292
Query: 144 RTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFE 203
T +GGTH+EG +++LTR +N++ +K +K+ D+S+ GE VREGLT +ISV++ NP+FE
Sbjct: 293 NTREGGTHLEGFRSALTRAINNIAHANKHLKE-DVSVRGEDVREGLTAVISVKIANPQFE 351
Query: 204 GQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVR 263
GQTK RLGN V+ +VD + + LTE+ E +P V+ +I KSL A A AA+RA++L R
Sbjct: 352 GQTKMRLGNSNVKGLVDSMMYQALTEFFEENPKVIAAIAKKSLDAANAREAARRAKELAR 411
Query: 264 QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNV 323
+K+ L S LPGKLADCS P +SEI+IVEGDSAGGSAKQGRDR+FQAILPLRGKILNV
Sbjct: 412 RKTSLEMSGLPGKLADCSERDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNV 471
Query: 324 ERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTF 383
E+ E KN EIQ LI A+G G G+ F E RYH I+I+TDADVDGAHIR LLLTF
Sbjct: 472 EKALEHKALKNAEIQTLITAIGAGY-GDKFDAERARYHHIVIMTDADVDGAHIRILLLTF 530
Query: 384 FYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGL 443
FYR+ K L + G IY+ PPL+++ +GKQ +Y Y + +++ + + + S+QR+KGL
Sbjct: 531 FYRFMKPLVEMGYIYIAQPPLFRIAKGKQEKYVYTEEDMRLAIAEYGEKGI-SVQRYKGL 589
Query: 444 GEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNL 502
GEM QLW TT+NPE R+LKQ+ IEDA+ AN +F LMG V RK+ I+ +A + NL
Sbjct: 590 GEMNAGQLWNTTMNPEFRILKQVRIEDASYANEIFEKLMGDDVMPRKDFIKRHAGEVKNL 649
Query: 503 D 503
D
Sbjct: 650 D 650
>gi|269797076|ref|YP_003310976.1| DNA gyrase subunit beta [Veillonella parvula DSM 2008]
gi|269093705|gb|ACZ23696.1| DNA gyrase, B subunit [Veillonella parvula DSM 2008]
Length = 633
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/476 (50%), Positives = 329/476 (69%), Gaps = 8/476 (1%)
Query: 30 GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA 89
GT + F PD ++F T + F +T+ R++ELAFLN L I L D E+ + + +
Sbjct: 163 GTTVIFKPDAEIFETTV-FSFDTLKMRLQELAFLNKGLRITL--SDLRLEEPRVESFHYE 219
Query: 90 GGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDG 148
GGL ++ +LN +K+ ++ V+ D + +D+ALQ+ +D+YS+ +L + N+I TIDG
Sbjct: 220 GGLISFITFLNENKEAINPTVINIENTKDDVVVDVALQY-NDSYSENLLSFVNNINTIDG 278
Query: 149 GTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKT 208
GTH+ G +A+LTRTLN G+KS +K+ + +LSGE VREGLT ++SV+V P+FEGQTKT
Sbjct: 279 GTHLSGFRAALTRTLNDYGRKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKT 338
Query: 209 RLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVL 268
+LGN EV+ + D V E L + E HP I+ K+ A +A AA++ARDL R+K+ L
Sbjct: 339 KLGNSEVKGITDVIVTEGLKTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNAL 398
Query: 269 RSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDE 328
SSLPGKLADCS +EI++VEGDSAGGSAKQGRDRR+QAILPLRGKILNVE+
Sbjct: 399 EVSSLPGKLADCSEKDTSMTEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARL 458
Query: 329 AAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQ 388
+ N EI+++I A G G+ G++F RY+KIII+TDADVDGAHIRTLLLTFFYRY
Sbjct: 459 DKILANNEIRSMITAFGTGI-GDEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYM 517
Query: 389 KTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMP 448
K L +EG IY+ PPLY++++GK Y Y DAEL + +IQR+KGLGEM P
Sbjct: 518 KPLVEEGHIYIAQPPLYQIKKGKSHWYVYSDAELTAKLDEVGRDGT-TIQRYKGLGEMNP 576
Query: 449 VQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV-NLD 503
QLWETT+NPE R + Q+ +ED+ EA+ +F+ LMG +V+ R++ I++ A V NLD
Sbjct: 577 EQLWETTMNPENRTILQVSLEDSIEADKIFTVLMGDKVEPRRKFIEDNAKYVRNLD 632
>gi|325102923|ref|YP_004272577.1| DNA gyrase subunit B [Pedobacter saltans DSM 12145]
gi|324971771|gb|ADY50755.1| DNA gyrase subunit B [Pedobacter saltans DSM 12145]
Length = 652
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 238/512 (46%), Positives = 346/512 (67%), Gaps = 17/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RGKP+ V + DR GT F PD ++FT ++ +T+AGR+RELAF
Sbjct: 146 FTQEYERGKPL----FDVKVIGESDRTGTIQTFQPDPEIFTQTTEYRFDTLAGRLRELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQY--NEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN + + L E E + E++ GGL E+V +L++ + PL D + + +GI
Sbjct: 202 LNKGIRLVLTDEREVKEDGSFLSEEFYSEGGLREFVTFLDSTRTPLIPDAIYIEGEKNGI 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++LA + +++Y++ + Y N+I TI+GG+H+ G + LTRTL S +KS +K+ +
Sbjct: 262 PVELAFTY-NNSYNENIHSYVNNINTIEGGSHVAGFRRGLTRTLKSYAEKSGLLKNLKVE 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
++G+ REGLT +ISV+V P+FEGQTKT+LGN EV VD +V E L +LE +P
Sbjct: 321 ITGDDFREGLTAVISVKVQEPQFEGQTKTKLGNTEVTGAVDIAVGEALGNFLEENPKEAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I++K + A A AA++AR++V++K+V+ S LPGKLADC++ P E+F+VEGDSAG
Sbjct: 381 LIVNKVILAATARAAARKAREMVQRKNVMGGSGLPGKLADCANKDPHVCELFLVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGV-KGEDFKK--- 355
G+AKQGR+R FQAILPL+GKILNVE+ E +Y+N+EI+N+ ALG+ + ED K+
Sbjct: 441 GTAKQGRNRDFQAILPLKGKILNVEKAMEHKIYENDEIKNIFTALGVSIGTAEDEKELNL 500
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
E LRYHK+II+TDADVDG+HI TL+LTFF+RY K L + G IY+ PPLY+V++GK+ +Y
Sbjct: 501 EKLRYHKVIIMTDADVDGSHITTLILTFFFRYMKQLIEAGNIYIAAPPLYQVKKGKEFEY 560
Query: 416 CYD----DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
C++ DA ++++K ++++ IQR+KGLGEM QLWETTLNPE R LK+ IE A
Sbjct: 561 CWNDVQRDAAVQRLKGGGKEDSVH-IQRYKGLGEMNAEQLWETTLNPETRTLKRATIESA 619
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AEA+ +FS LMG V R+E I+ A +D
Sbjct: 620 AEADRIFSMLMGDEVAPRREFIEKNARYAKID 651
>gi|193211690|ref|YP_001997643.1| DNA gyrase subunit B [Chlorobaculum parvum NCIB 8327]
gi|193085167|gb|ACF10443.1| DNA gyrase, B subunit [Chlorobaculum parvum NCIB 8327]
Length = 647
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 236/507 (46%), Positives = 336/507 (66%), Gaps = 17/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG P V V + D++GT++ F PD +F +F + I R+RELAF
Sbjct: 151 FRQTYKRGVP----QGGVEEVGTTDQKGTKVTFKPDPDIFKIT-EFRKDIIIDRMRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK-KPLHDVVGFRKDVDGITI 121
LN L I ++ + E + F GGL E+V++ + ++ L + + + + +
Sbjct: 206 LNSNLRIIVQDAEGFEET-----FHFEGGLREFVRFTDANRLSLLKEPIFLSGERESTMV 260
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y + + Y N+I T +GGTH+ G + +LTRTLN+ +K+ +K+ I+L+
Sbjct: 261 EIALQY-NDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNAYAQKNDLLKNVKITLT 319
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +EGLT +ISV+VP P+FEGQTKT+LGN E + +V+ V E L E+ E +P L I
Sbjct: 320 GDDFKEGLTAVISVKVPEPQFEGQTKTKLGNSETQSIVETIVNEQLAEFAESNPGTLKLI 379
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K A + AA++A++L R+KSVL SS LPGKLADCS P+ E++IVEGDSAGGS
Sbjct: 380 IEKVKGAAISREAARKAKELTRRKSVLESSGLPGKLADCSINDPDHCELYIVEGDSAGGS 439
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPL+GKILNVE+ M +NEEI+ +I ALG + E+F E LRY
Sbjct: 440 AKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILALGTSIGEEEFSPEKLRYG 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFF+RY ++L + G +++ PPLY V+ G++ QY +D+ E
Sbjct: 500 KIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVFIAQPPLYLVKAGREQQYAWDEEE 559
Query: 422 ----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+++K A SIQR+KGLGEM P QLW TT++PE R L Q+ +E+A EA+ V
Sbjct: 560 RASITEQMKKLQKGKANVSIQRYKGLGEMNPEQLWSTTMDPEHRSLLQVTVENAMEADQV 619
Query: 478 FSSLMGARVDTRKELI-QNAANLVNLD 503
FS+LMG +V+ R+ I QNA + LD
Sbjct: 620 FSTLMGDKVEPRRNFIEQNAKYVRRLD 646
>gi|326202777|ref|ZP_08192644.1| DNA gyrase, B subunit [Clostridium papyrosolvens DSM 2782]
gi|325986854|gb|EGD47683.1| DNA gyrase, B subunit [Clostridium papyrosolvens DSM 2782]
Length = 642
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 244/511 (47%), Positives = 347/511 (67%), Gaps = 19/511 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QKYSRGKP+T++ + + GT F PD +F I FD + + R RE+AF
Sbjct: 145 YRQKYSRGKPITSVEI----IGETEDSGTITTFKPDPDIFED-IVFDFDVMITRYREMAF 199
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN + I L ++ D EKN + E GG+ +V++LN K+PLHD V+ F D
Sbjct: 200 LNRGIKIQLIDQRPDEIIEKNLHYE----GGIISFVEYLNKTKEPLHDKVIYFEGIRDAN 255
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+Q+ +D Y++T+ YAN+I T +GGTH+ G ++++T+ LN +K +++ D +
Sbjct: 256 IVEVAMQY-NDNYNETVFSYANNIATTEGGTHLTGFRSAITKVLNDYARKFNIIRENDKN 314
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSGE VREGLT +ISV++P P+FEGQTKT+LGN E+R +V+ V + L +LE +P +
Sbjct: 315 LSGEDVREGLTAVISVKLPEPQFEGQTKTKLGNSEIRTLVENVVSDKLNIFLEENPAIAK 374
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
IL KSL+A +A AA++AR+L R+KS + SS+LPGKLADCS P ++EIFIVEGDSAG
Sbjct: 375 IILDKSLTAARARDAARKARELTRRKSAMDSSTLPGKLADCSEKDPTKTEIFIVEGDSAG 434
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR+ QAILPL GK+LNVE+ ++ NE++ +I ALG G+ G++F LR
Sbjct: 435 GSAKQGRDRKIQAILPLWGKMLNVEKSRLDKVFDNEKLAPVIIALGAGI-GDEFDTSKLR 493
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
Y KIII+ DADVDG+HIR LLLTFF+RY + L ++G +Y+ +PPL+KV +GK Y YDD
Sbjct: 494 YDKIIIMADADVDGSHIRMLLLTFFFRYMRPLVEQGHVYIAMPPLFKVYKGKDEYYAYDD 553
Query: 420 AELKKV---KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
++ K+ + + +IQRFKGLGEM P QLWETT+NPE R + ++ ++DA A+
Sbjct: 554 RQVSKIFEDRGWRKDDPNVNIQRFKGLGEMNPDQLWETTMNPETRTIMKVDVQDAITADE 613
Query: 477 VFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
VFS MG +V+ RKE I A ++ +LDI
Sbjct: 614 VFSMFMGEKVEPRKEYIHLHAK--DVTYLDI 642
>gi|238926604|ref|ZP_04658364.1| DNA gyrase subunit B [Selenomonas flueggei ATCC 43531]
gi|238885550|gb|EEQ49188.1| DNA gyrase subunit B [Selenomonas flueggei ATCC 43531]
Length = 685
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 249/500 (49%), Positives = 335/500 (67%), Gaps = 14/500 (2%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT-TAIQFDHNTIAGRIRELAFLNP 65
+SRG VTT H + + D GTR+ F PD ++FT T FD T+ R+RELAFLN
Sbjct: 196 FSRG--VTTTKLH--EIGTSDTTGTRVHFVPDPEIFTVTTYSFD--TLKHRLRELAFLNH 249
Query: 66 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLA 124
+TI L E +++ + F GG+ +V LN K+ +++ + F D +++A
Sbjct: 250 GITITLTDERGAEVRSE--TFHFDGGIRSFVSHLNRKKETINEEPIYFNGVKDDTVVEIA 307
Query: 125 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 184
+Q+ +D+Y + + + N+I T +GGTH+ G K +LTR N ++ +K+KD +LSGE
Sbjct: 308 MQY-NDSYQENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARRLNVLKEKDGNLSGED 366
Query: 185 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 244
VREGLT +IS++V P+FEGQTKT+LGN EVR +VD V E LTEY E +P V +L K
Sbjct: 367 VREGLTAVISLKVREPQFEGQTKTKLGNSEVRGIVDSIVTEGLTEYFEENPAVTKKVLDK 426
Query: 245 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 304
+L A +A AA++AR+L R+K+ L SSLPGKLADCS P++ EI+IVEGDSAGGSAKQ
Sbjct: 427 ALMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPDQCEIYIVEGDSAGGSAKQ 486
Query: 305 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 364
GRDRRFQAILPLRGKILNVE+ ++ N EI+ +I A G G+ GE+F RY KII
Sbjct: 487 GRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGI-GEEFDLAKRRYSKII 545
Query: 365 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 424
I+TDADVDGAHIRTLLLTFFYRY K L D G +Y+ PPLY++ + K+ Y Y D E K
Sbjct: 546 IMTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVYIAQPPLYQIRKDKKHFYTYSDDEQAK 605
Query: 425 VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA 484
+ + +IQR+KGLGEM P QLWETT+NPE R + Q+ EDA A+ +F+ LMG
Sbjct: 606 KLDELGRDGV-TIQRYKGLGEMNPEQLWETTMNPEGRTMLQVGAEDAEAADELFTILMGD 664
Query: 485 RVDTRKELIQNAANLV-NLD 503
+V+ R++ I+ A LV NLD
Sbjct: 665 KVEPRRQFIEENAKLVRNLD 684
>gi|331700400|ref|YP_004397359.1| DNA gyrase subunit B [Lactobacillus buchneri NRRL B-30929]
gi|329127743|gb|AEB72296.1| DNA gyrase, B subunit [Lactobacillus buchneri NRRL B-30929]
Length = 647
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 237/503 (47%), Positives = 333/503 (66%), Gaps = 8/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ +SRG T + V+ S D GT++ F PD +F +D + R+RELAF
Sbjct: 150 YYMDFSRGHVKTKM--KVVREVSDDLHGTKVHFLPDPDIFRETTTYDIKVLTARLRELAF 207
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
LN L I + D PEK ++ + GG++ YV++L+ K+ L D + + V +GIT+
Sbjct: 208 LNKGLRIVVL--DLRPEKPTEQDFMYEGGIKHYVEYLDNSKETLLDEPIYVEGVMNGITV 265
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y +T++ + N+I T +GGTH EG K +LTR +N +K+K +KD + +LS
Sbjct: 266 EVAIQYTND-YHNTLMTFTNNIHTYEGGTHEEGFKRALTRVINDYARKNKLLKDNEPNLS 324
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG T ++S++ P+P+FEGQTKT+LGN + R V D+ ++ T++L +P + I
Sbjct: 325 GEDVREGTTAVVSIKHPDPQFEGQTKTKLGNSDARTVTDRIFSDHFTKFLMENPKMARKI 384
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ + + A KA AAKRAR++ R+KS L S+LPGKLAD +S P+ SE+FIVEGDSAGGS
Sbjct: 385 VDRGMLASKARSAAKRAREVTRKKSGLEISNLPGKLADNTSKDPKISELFIVEGDSAGGS 444
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R QAILP+RGKILNVE+ + NEEI++L A+G G GEDF + YH
Sbjct: 445 AKQGRSRLTQAILPIRGKILNVEKASMDRILANEEIRSLFTAMGTGF-GEDFDLSKINYH 503
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHI+TLLLT YRY + L D G +YV PPLY+V +GK +Y D +
Sbjct: 504 KLIIMTDADVDGAHIQTLLLTLIYRYMRPLIDAGFVYVAQPPLYQVRQGKMSRYIDSDDD 563
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + + IQR+KGLGEM QLW+TT+NPE R L ++ DAAEA+ VFS L
Sbjct: 564 LNAFLGTLQPSPKPVIQRYKGLGEMDAEQLWDTTMNPENRHLLRVESSDAAEADKVFSML 623
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R+E I++ A V NLD
Sbjct: 624 MGDKVEPRREFIEDNATFVENLD 646
>gi|387789733|ref|YP_006254798.1| DNA gyrase subunit B [Solitalea canadensis DSM 3403]
gi|379652566|gb|AFD05622.1| DNA gyrase, B subunit [Solitalea canadensis DSM 3403]
Length = 653
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 241/510 (47%), Positives = 345/510 (67%), Gaps = 17/510 (3%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
Q+Y RGKP V V + GT + F PD ++FT ++++T+A R+RELA+LN
Sbjct: 149 QEYERGKP----QYDVKTVGETNITGTIVTFTPDTEIFTLTTIYNYDTLAARLRELAYLN 204
Query: 65 P--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
+LT+ +E +D N YF GGL+E++ +L+ +++PL + + + GI +
Sbjct: 205 KGIRLTLTDERETNDDGSYVVNSYFSEGGLKEFITYLDGNREPLIPEPIYIDGNKSGIPV 264
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+LALQ+ S YS+ + Y N+I TI+GGTH+ G + LTRTL S +KS +K+ + ++
Sbjct: 265 ELALQYNS-TYSENVHSYVNNINTIEGGTHVAGFRRGLTRTLKSYAEKSGLLKNLKVEIT 323
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ REGLT ++SV+V P+FEGQTKT+LGN EV VDQ+V E L YLE HP I
Sbjct: 324 GDDFREGLTAVVSVKVAEPQFEGQTKTKLGNNEVIGAVDQAVGEILGVYLEEHPKEARLI 383
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A A AA++AR++V++KSV+ S LPGKL+DCS+ PE E+++VEGDSAGG+
Sbjct: 384 VQKVVLAATARAAARKAREMVQRKSVMSGSGLPGKLSDCSNNDPEACELYLVEGDSAGGT 443
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG-EDFKK---EA 357
AKQGRDR FQAILPL+GKILNVE+ E +Y+NEEI+N+ A+G+ + ED K E
Sbjct: 444 AKQGRDRNFQAILPLKGKILNVEKAMEHKIYENEEIKNIFTAMGVSIGTPEDDKALNLEK 503
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHKIII+TDADVDG+HI TL+LTFF+RY K L ++G IY+ PPLY V++GK +Y +
Sbjct: 504 LRYHKIIIMTDADVDGSHITTLILTFFFRYMKALVEQGYIYIATPPLYLVKKGKDFEYAW 563
Query: 418 DD----AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
+ A +++VK + +++ +IQR+KGLGEM QLWETT+NP+ R L+Q+ IE+AAE
Sbjct: 564 TEEQRLAAIERVKGNGKEDSV-NIQRYKGLGEMNAEQLWETTMNPDTRTLRQVTIENAAE 622
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
+ FS LMG V R++ I+ A +D
Sbjct: 623 CDHTFSVLMGDEVAPRRDFIEKHAKYAKID 652
>gi|427384558|ref|ZP_18881063.1| DNA gyrase, B subunit [Bacteroides oleiciplenus YIT 12058]
gi|425727819|gb|EKU90678.1| DNA gyrase, B subunit [Bacteroides oleiciplenus YIT 12058]
Length = 653
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 232/512 (45%), Positives = 342/512 (66%), Gaps = 18/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y G P V + + D GTR +FWPD +FT + +++ +A R+RELA+
Sbjct: 148 YQQEYECGHP----QYPVKEIGTSDITGTRQQFWPDNTIFTETV-YNYEILASRMRELAY 202
Query: 63 LNPKLTIALRK-EDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN + I L D E N E F++ GL+E+V+++++ ++ L +DV+ + G
Sbjct: 203 LNAGIKITLTDLRVKDEEGNAKMEMFYSEEGLKEFVRYIDSSREHLVNDVIYINTEKQGT 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+ + + +Y++ + Y N+I TI+GGTH+ G + +LTRTL + +K ++ +
Sbjct: 263 PVEVAIMYNT-SYNENIHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDNKMLEKAKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
++G+ REGLT +IS++V P+FEGQTKT+LGN EV VDQ+V E L YLE HP
Sbjct: 322 IAGDDFREGLTAVISIKVQEPQFEGQTKTKLGNSEVMGAVDQAVGEALNYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K + A +A +AA++AR+ V++KS + +PGKLADCSS PEE E+F+VEGDSAG
Sbjct: 382 LVVDKVILAAQARVAARKARESVQRKSPMSGGGMPGKLADCSSKDPEECELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFKK-- 355
GSAKQGRDRRFQAILPLRGKILNVE+ ++++E+ N+I+ALG+ GV GED K+
Sbjct: 442 GSAKQGRDRRFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQALGIRFGVDGEDSKEAN 501
Query: 356 -EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY K+II+TDADVDG+HI TL++T F+RY + G +Y+ PPLY ++GK +
Sbjct: 502 IDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQVIRNGYLYIATPPLYLCKKGKVEE 561
Query: 415 YCYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
YC+ D + +K ++ NA+++ QR+KGLGEM P QLW TT+NP+ RMLKQ+ IE+A
Sbjct: 562 YCWTDQQRQKFIDTYGGGSENAVHT-QRYKGLGEMNPEQLWSTTMNPDNRMLKQISIENA 620
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AE + VFS LMG V R+E I+ A N+D
Sbjct: 621 AEVDYVFSMLMGEDVGPRREFIEKNATYANID 652
>gi|335427801|ref|ZP_08554721.1| DNA gyrase subunit B [Haloplasma contractile SSD-17B]
gi|335429240|ref|ZP_08556142.1| DNA gyrase subunit B [Haloplasma contractile SSD-17B]
gi|334890320|gb|EGM28592.1| DNA gyrase subunit B [Haloplasma contractile SSD-17B]
gi|334893727|gb|EGM31936.1| DNA gyrase subunit B [Haloplasma contractile SSD-17B]
Length = 659
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 247/525 (47%), Positives = 344/525 (65%), Gaps = 33/525 (6%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q + G PV+ L + D+ G+ + F D +FT I++ + T+ RIRE AF
Sbjct: 143 YQQVFELGNPVSDLKI----IGETDKTGSTVEFKADSAIFTDTIKYKYETLRTRIRETAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNE-----------------------YFFAGGLEEYVQWL 99
LN L I + EDS P K++ + +F+ GG++EYV +L
Sbjct: 199 LNKGLRIII--EDSRPSKDKPTKDEADIDQEDRDASEEKHPHKIETFFYEGGIQEYVGYL 256
Query: 100 NTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL 159
N K+ ++DV+ + ++DGI +++ALQ+ +++YS + +AN+IRT +GGTH G K +L
Sbjct: 257 NRGKEIINDVIYMQDEIDGIVMEIALQY-TNSYSSNIYSFANNIRTKEGGTHELGFKLAL 315
Query: 160 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 219
TR LNS K + K KD SL+G+ VREGLT IIS + P+P+FEGQTK++LG+ EVRK+
Sbjct: 316 TRVLNSYSKSNNIFK-KDESLTGDDVREGLTAIISCKHPDPQFEGQTKSKLGSSEVRKIS 374
Query: 220 DQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLAD 279
D + L +YL HP+ SI+ K+L A +A AAKRAR+ R+KS L S KLAD
Sbjct: 375 DNVLSNGLGQYLLEHPNEAKSIIEKALMASRAREAAKRAREATRRKSPLDSLGFASKLAD 434
Query: 280 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 339
C S P++SE++IVEGDSAGGSAKQGR+ FQAILPLRGK+LNVE+ N+EI +
Sbjct: 435 CRSKDPKKSELYIVEGDSAGGSAKQGRESEFQAILPLRGKVLNVEKSRMDRALANKEIIS 494
Query: 340 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 399
+I+A+G G+ GE+F E RYHK++I+TDADVDGAHIR LLLTFF+RY K L ++G IY+
Sbjct: 495 MIQAIGTGI-GEEFNVEKTRYHKVVIMTDADVDGAHIRILLLTFFFRYMKPLIEKGYIYI 553
Query: 400 GVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPE 459
PPLYKV + K++ Y Y + EL+ + S + S+QR+KGLGEM P QLWETT++P
Sbjct: 554 AQPPLYKVVQSKKIYYAYTEKELEVLMSELADSPKPSLQRYKGLGEMNPEQLWETTMDPS 613
Query: 460 QRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 503
R L ++ I+DA EA+++F LMG VD R+E IQ NA + NLD
Sbjct: 614 ARTLIKVTIDDAMEADLIFDRLMGDNVDPRREFIQENAKYVKNLD 658
>gi|302390804|ref|YP_003826624.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501]
gi|302202881|gb|ADL11559.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501]
Length = 639
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 240/499 (48%), Positives = 344/499 (68%), Gaps = 11/499 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ+Y G PV LT + GT I+F PD ++F + I F++ + R++ELA+
Sbjct: 146 YHQRYEEGVPVKDLTV----IGESQASGTMIKFKPDLEIFES-IDFEYKKLIKRLKELAY 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I ++ + D K +Y GG+ +VQ LN +K P+H+ + F + + I
Sbjct: 201 LNKGIKIEIKDKRRDEIKTDIFQY--DGGIVSFVQELNENKDPIHEEPIYFETEEEDNHI 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ ++ Y D + +AN+I T +GG H+ G K++LTRT+N ++ +K+ D +LS
Sbjct: 259 EVAIQY-NETYVDNIFTFANNINTHEGGNHLSGFKSALTRTINDYARRHDYLKEDDSNLS 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REG+ I++V++P+P+FEGQTKT+L N EVR +VD V E L +LE P++ I
Sbjct: 318 GDDIREGIVAIVNVKLPDPQFEGQTKTKLANSEVRGIVDSVVSENLDRFLEEDPEIGSII 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ A +A AAK+AR+L R+KS L S++LPGKLADCSS PEESE++IVEGDSAGGS
Sbjct: 378 VQKAIKAAEARKAAKKARELTRRKSALTSTALPGKLADCSSRDPEESELYIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQAILPL+GKILNVE+ + N EI++LI ALG G+ G++F E RY
Sbjct: 438 AKQGRDRKFQAILPLKGKILNVEKARLNKILNNNEIRSLITALGTGI-GKEFDMEQARYK 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYRY + L + G IY+ PPLYKV +G++ Y Y+D +
Sbjct: 497 KIIIMTDADVDGAHIRTLLLTFFYRYMRPLLEAGNIYIAQPPLYKVNKGRKEYYVYNDRK 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ + + + SIQR+KGLGEM P QLWETT++PE R Q+ IEDA A+ +F++L
Sbjct: 557 LEELLNEIGRSGI-SIQRYKGLGEMNPKQLWETTMDPENRTTLQVQIEDAVMADDIFTTL 615
Query: 482 MGARVDTRKELIQNAANLV 500
MG +V R++ IQ A V
Sbjct: 616 MGDKVAPRRKFIQKHAKEV 634
>gi|312142414|ref|YP_003993860.1| DNA gyrase subunit B [Halanaerobium hydrogeniformans]
gi|311903065|gb|ADQ13506.1| DNA gyrase, B subunit [Halanaerobium hydrogeniformans]
Length = 640
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 242/503 (48%), Positives = 348/503 (69%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QKY RG P L + DS D GT I F D Q+F I +++ +A R++ELAF
Sbjct: 145 YKQKYERGVPQHELRA-IGSCDS-DCTGTTIEFKADPQIFE-EIDYEYRNLAQRLKELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I + DS ++ + +EY + GGL +V++LN KKPL+ D + + + ++
Sbjct: 202 LNKGLKIKII--DSRVDETKEDEYQYDGGLVSFVKYLNQSKKPLYPDPIYLETEGEEGSL 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ Y+ ++ +AN+I T +GGTH+ G K+++TRT N +K +KD D +
Sbjct: 260 EVAIQY-HQGYNSSIFSFANNINTKEGGTHLSGFKSAITRTFNDYARKKNILKDSDDNFK 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REG+T IISV++ +P+FEGQTKT+LGN E+R VD +V +L +LE +P + I
Sbjct: 319 GQDIREGMTAIISVKLADPQFEGQTKTKLGNSEMRGFVDSAVSSFLKTFLEENPKIAKVI 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+LSA +A AA++ARDL R+KS L S++LPGKLADC+ +++E++IVEGDSAGGS
Sbjct: 379 VDKALSAARARKAARKARDLTRRKSALTSTALPGKLADCAKRQAKDTEVYIVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILPL+GKILNVE+ + N+EI+ LI A+G GV E+F LRY
Sbjct: 439 AKQGRNREFQAILPLKGKILNVEKSRLNKILNNDEIRALITAIGTGV-AEEFDINNLRYE 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDAD+DGAHIRTLLLTFFYRY + L + G IY+ PPLYKV++G++ +Y Y+D
Sbjct: 498 RIIIMTDADIDGAHIRTLLLTFFYRYMRPLLENGNIYIAQPPLYKVKKGRKEEYVYNDKA 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LK++ + + S+QR+KGLGEM P QLW+TT++P+ R+L Q+ IEDA A+ FS L
Sbjct: 558 LKELLDEIGRDRV-SMQRYKGLGEMNPGQLWDTTMDPDNRILLQVNIEDAILADETFSIL 616
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R++ IQ NAA + NLD
Sbjct: 617 MGDKVEPRRKFIQENAAQVKNLD 639
>gi|358068691|ref|ZP_09155147.1| B subunit [Johnsonella ignava ATCC 51276]
gi|356693143|gb|EHI54828.1| B subunit [Johnsonella ignava ATCC 51276]
Length = 639
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 235/508 (46%), Positives = 335/508 (65%), Gaps = 17/508 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y +SRG LT V+ S+D GT + F+PD VF + FD++T+ R RE AF
Sbjct: 141 YQMGFSRGNVTQGLT--VIGDCSEDESGTEVTFFPDGNVFEETV-FDYDTLKNRFRETAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVV----GFRKDVDG 118
L L I ++ D E+ + N + + GGL E+V +LN +K P +D V G R++V+
Sbjct: 198 LTRNLKINIK--DERYEEKRENSFHYEGGLNEFVAFLNKEKNPFYDKVIYCEGIRENVN- 254
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+++A+Q +D+YS+ + + N+I T GGTH+ G K ++T+T N +K+K +K+ +
Sbjct: 255 --VEVAMQH-NDSYSENIYSFVNNINTPAGGTHLTGFKNAITKTFNDYIRKNKLIKESEE 311
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSGE +REGLT +IS+++ NP+F+ QTK +LGN E V + E LT ++E +P +
Sbjct: 312 NLSGEDIREGLTAVISIKIENPQFDSQTKQKLGNSEASLAVSSIINEQLTYFIEQNPQIA 371
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I K++ A+ A LAA++ARD+ R+KS L SLPGKLADCSS E EIFIVEGDSA
Sbjct: 372 KKICEKAIGAMHARLAARKARDITRRKSALEGLSLPGKLADCSSKNASECEIFIVEGDSA 431
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAK R R QAILPLRGKILNVE+ +Y N EI+++I A G G++ +DF E L
Sbjct: 432 GGSAKNARKRDTQAILPLRGKILNVEKARLDKIYANSEIRSMITAFGTGIQ-DDFDIEKL 490
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHKIII+TDADVDGAHI TL+LTF YR+ L +G +Y+ PPLYK+E+ K+V Y Y+
Sbjct: 491 RYHKIIIMTDADVDGAHIDTLMLTFIYRFMPELIRQGHVYLARPPLYKLEKNKRVWYAYN 550
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA--AEANV 476
D EL + + +A IQR+KGLGEM QLWETT++PE+R+L ++V +D +E ++
Sbjct: 551 DDELADILNQVGRDAGNKIQRYKGLGEMDEEQLWETTMDPERRVLLKVVADDEIRSEIDL 610
Query: 477 VFSSLMGARVDTRKELIQNAANLV-NLD 503
F++LMG +V+ R+E I+ A NLD
Sbjct: 611 TFTTLMGDKVEPRREFIEKNAKFAKNLD 638
>gi|327401204|ref|YP_004342043.1| DNA gyrase subunit B [Archaeoglobus veneficus SNP6]
gi|327316712|gb|AEA47328.1| DNA gyrase, B subunit [Archaeoglobus veneficus SNP6]
Length = 621
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 246/502 (49%), Positives = 340/502 (67%), Gaps = 19/502 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+QKY RG PVT L + GT+IRF PD+++F T +F + +A R++ELA+
Sbjct: 137 YYQKYERGVPVTPLQV----IGETKETGTKIRFKPDEEIFETT-EFRWDIVAQRLKELAY 191
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN + + L E S K Y+E G++ +V LN +K +HDV+ F ++ +GI ++
Sbjct: 192 LNKGIRLKLIDERSGKSKEFYSE----DGIKGFVAQLNKNKPVIHDVIHFSEEKNGIMVE 247
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+A+Q+ +D + +L +AN+I TI+GGTH G +A LTR +N GKK VK K L+G
Sbjct: 248 VAIQF-TDTEIENVLFFANNINTIEGGTHAVGFRAGLTRAINEFGKKY--VK-KFKPLTG 303
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+REGLT ++SV+VP P+FEGQTKT+L N EV+ VV+ V + ++LE HP+ + I+
Sbjct: 304 ADIREGLTAVVSVKVPEPQFEGQTKTKLTNSEVKTVVESIVYSEVLKWLEEHPNEANRII 363
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K + A+KA AA++AR++VR+K + S +LPGKLADCSS PEE E+FIVEG+SAGGSA
Sbjct: 364 EKCILAMKAREAARKAREIVRRKGEI-SITLPGKLADCSSKNPEERELFIVEGESAGGSA 422
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQ RDRRFQAILP+RGKI+NVE+ A +NEEI+ + A+ G+DF RY +
Sbjct: 423 KQARDRRFQAILPIRGKIINVEKAGMAKALRNEEIKAIAAAI-GAGIGKDFDITKARYRR 481
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
+II+TDADVDGAHIRTLLLTFFYRY K L + G +Y+ PPLY+V++GK+V Y Y D EL
Sbjct: 482 VIIMTDADVDGAHIRTLLLTFFYRYMKPLIESGYLYIAQPPLYRVKKGKKVYYVYSDREL 541
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
+ + NA +QR+KGLGEM P QLWETT+NP R L Q+ +EDAA A +FS LM
Sbjct: 542 EDLLERI-GNA--EVQRYKGLGEMNPEQLWETTMNPHNRYLIQVTLEDAARAEELFSVLM 598
Query: 483 GARVDTRKELI-QNAANLVNLD 503
G V+ RK I +++ + NLD
Sbjct: 599 GEDVEARKRFIMEHSKEVRNLD 620
>gi|417000085|ref|ZP_11940439.1| DNA gyrase, B subunit [Veillonella parvula ACS-068-V-Sch12]
gi|333976331|gb|EGL77200.1| DNA gyrase, B subunit [Veillonella parvula ACS-068-V-Sch12]
Length = 633
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 241/499 (48%), Positives = 337/499 (67%), Gaps = 12/499 (2%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
++RG T + + + GT + F PD ++F T + F +T+ R++ELAFLN
Sbjct: 144 FARGHK----TSELHEIGKAEGTGTTVIFKPDAEIFETTV-FSFDTLKMRLQELAFLNKG 198
Query: 67 LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLAL 125
L I L D E+ + + + GGL ++ +LN +K+ ++ V+ D + +D+AL
Sbjct: 199 LRITL--SDLRLEEPRVESFHYEGGLVSFITFLNENKEAINPTVINIENTKDDVVVDVAL 256
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
Q+ +D+YS+ +L + N+I TIDGGTH+ G +A+LTRTLN G+KS +K+ + +LSGE V
Sbjct: 257 QY-NDSYSENLLSFVNNINTIDGGTHLSGFRAALTRTLNDYGRKSGLIKESESNLSGEDV 315
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 245
REGLT ++SV+V P+FEGQTKT+LGN EV+ + D V E L + E HP I+ K+
Sbjct: 316 REGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVTEGLKTFFEEHPQDAKKIIEKA 375
Query: 246 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 305
A +A AA++ARDL R+K+ L SSLPGKLADCS +EI++VEGDSAGGSAKQG
Sbjct: 376 TMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSMTEIYLVEGDSAGGSAKQG 435
Query: 306 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 365
RDRR+QAILPLRGKILNVE+ + N EI+++I A G G+ G++F RY+KIII
Sbjct: 436 RDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTGI-GDEFDITKSRYNKIII 494
Query: 366 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 425
+TDADVDGAHIRTLLLTFFYRY K L +EG IY+ PPLY++++GK Y Y DAEL
Sbjct: 495 MTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQIKKGKSHWYVYSDAELTAK 554
Query: 426 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 485
+ +IQR+KGLGEM P QLWETT+NP+ R + Q+ +ED+ EA+ +F+ LMG +
Sbjct: 555 LDEVGRDGT-TIQRYKGLGEMNPEQLWETTMNPDNRTILQVSLEDSIEADKIFTVLMGDK 613
Query: 486 VDTRKELIQNAANLV-NLD 503
V+ R++ I++ A V NLD
Sbjct: 614 VEPRRKFIEDNAKYVRNLD 632
>gi|395646371|ref|ZP_10434231.1| DNA gyrase, B subunit [Methanofollis liminatans DSM 4140]
gi|395443111|gb|EJG07868.1| DNA gyrase, B subunit [Methanofollis liminatans DSM 4140]
Length = 664
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 240/478 (50%), Positives = 331/478 (69%), Gaps = 13/478 (2%)
Query: 30 GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA 89
GT I F PD+ +F T + FD++ +A R+RELAFLN L+I++R E S E + Y +
Sbjct: 195 GTTISFVPDETIFET-VTFDYDVLAHRMRELAFLNSGLSISIRDERSGDE----DHYCYE 249
Query: 90 GGLEEYVQWLNTDKKPLH-DVVGF-RKDVDGIT-IDLALQWCSDAYSDTMLGYANSIRTI 146
GG+ E+V+ LN + +H +++ F RKD + T +++A Q+ ++ + + + + NS+ T
Sbjct: 250 GGIAEFVRHLNESAEKIHENIISFDRKDEENRTEVEVAFQY-TNTFKEQVYTFVNSVNTR 308
Query: 147 DGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQT 206
+GGTH+EG ++++TR +N+ KK +K+ S+ G+ VREGL +IS+++ NP+FEGQT
Sbjct: 309 EGGTHLEGFRSAITRAINNSAKKGNLLKN-GASVRGDDVREGLNAVISIKIANPQFEGQT 367
Query: 207 KTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKS 266
K RLGN VR +VD V LTE+ E +P L +I+ K+L A +A AA+ ARDL R+KS
Sbjct: 368 KMRLGNSAVRGIVDSLVYSSLTEFFEENPKTLQAIVGKALLAARAREAAQSARDLARRKS 427
Query: 267 VLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERK 326
L S LPGKLADCS P +SE++IVEGDSAGGSAKQGRDRRFQAILPLRGKILNVE+
Sbjct: 428 TLESGGLPGKLADCSERDPAKSEVYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKA 487
Query: 327 DEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYR 386
+ KN EIQ LI A+G GV GE F RYH+II++TDADVDGAHI TLLLTFF+R
Sbjct: 488 SPHKILKNAEIQALISAIGTGV-GEHFDASRARYHRIILMTDADVDGAHITTLLLTFFFR 546
Query: 387 YQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEM 446
Y L + G IY+ PPL++V RGK+ +Y Y + ++K++ ++ + S+QR+KGLGEM
Sbjct: 547 YMPELIEHGYIYIAQPPLFRVARGKKEEYAYREEDMKEIMAAMGDKGV-SVQRYKGLGEM 605
Query: 447 MPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV-NLD 503
QLWETT++P R+LKQ+ IEDA AN +F LMG V+ RKE I+ A V NLD
Sbjct: 606 NAGQLWETTMDPAHRVLKQVRIEDAIYANEIFEKLMGDDVEPRKEFIRRHAQEVKNLD 663
>gi|304315545|ref|YP_003850690.1| DNA gyrase subunit beta [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777047|gb|ADL67606.1| DNA gyrase, B subunit [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
Length = 633
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 236/503 (46%), Positives = 342/503 (67%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QKY RG P + L + D GT I F PD ++F T +++D++ ++ R+REL+F
Sbjct: 142 YEQKYERGVPKSDLKI----IGDTDETGTTITFAPDDEIFET-LEYDYDILSQRLRELSF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I L E E + + + GG+ E+V++LN +K+ LH + + D +
Sbjct: 197 LNKGVRIRLMDERDGKE----DVFHYEGGIVEFVKYLNRNKEVLHPEPIYMESKSDTYEV 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+Y++ + +AN+I T +GGTH+ G KA+LT+ +N +K +KD D +L
Sbjct: 253 EVAMQY-NDSYTENIFSFANNIDTREGGTHLIGFKAALTKVINDYARKFNIIKDNDKNLQ 311
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IISV++ NP+FEGQTKT+LGN E+R +VD V E LT ++E +P + I
Sbjct: 312 GEDVREGLTAIISVKLMNPQFEGQTKTKLGNSEMRSIVDSVVTEKLTAFMEENPSLSKVI 371
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K+ SA +A AA++AR+L R+KS L S+SLPGKLADCS + E+++VEGDSAGGS
Sbjct: 372 LEKATSAARAREAARKARELTRRKSALESTSLPGKLADCSEKDASKCELYLVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRD R+QAILPLRGKILNVE+ + ++EI+ +I ALG G+ G DF LRYH
Sbjct: 432 AKMGRDSRYQAILPLRGKILNVEKARLDRILSSDEIKAMITALGTGI-GSDFDISKLRYH 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDG+HIRTLLLTFFYR+ + L + G +Y+ PPLYK+E+ K+V Y Y D E
Sbjct: 491 KVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYIAQPPLYKIEKNKKVYYAYSDKE 550
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + Y++QR+KGLGEM QLW+TT++PE+R + ++ ++DA A+ +F+ L
Sbjct: 551 LDNILKEIGREN-YNVQRYKGLGEMDAEQLWDTTMDPEKRTMLKVSLDDAIAADEIFTIL 609
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R+E I+ A V NLD
Sbjct: 610 MGDKVEPRREFIEKYAKTVRNLD 632
>gi|294794197|ref|ZP_06759333.1| DNA gyrase, B subunit [Veillonella sp. 3_1_44]
gi|294454527|gb|EFG22900.1| DNA gyrase, B subunit [Veillonella sp. 3_1_44]
Length = 645
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 241/499 (48%), Positives = 337/499 (67%), Gaps = 12/499 (2%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
++RG T + + + GT + F PD ++F T + F +T+ R++ELAFLN
Sbjct: 156 FARGHK----TSELHEIGKAEGTGTTVIFKPDAEIFETTV-FSFDTLKMRLQELAFLNKG 210
Query: 67 LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLAL 125
L I L D E+ + + + GGL ++ +LN +K+ ++ V+ D + +D+AL
Sbjct: 211 LRITL--SDLRLEEPRVESFHYEGGLVSFITFLNENKEAINPTVINIENTKDDVVVDVAL 268
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
Q+ +D+YS+ +L + N+I TIDGGTH+ G +A+LTRTLN G+KS +K+ + +LSGE V
Sbjct: 269 QY-NDSYSENLLSFVNNINTIDGGTHLSGFRAALTRTLNDYGRKSGLIKENESNLSGEDV 327
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 245
REGLT ++SV+V P+FEGQTKT+LGN EV+ + D V E L + E HP I+ K+
Sbjct: 328 REGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVTEGLKTFFEEHPQDAKKIIEKA 387
Query: 246 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 305
A +A AA++ARDL R+K+ L SSLPGKLADCS +EI++VEGDSAGGSAKQG
Sbjct: 388 TMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSMTEIYLVEGDSAGGSAKQG 447
Query: 306 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 365
RDRR+QAILPLRGKILNVE+ + N EI+++I A G G+ G++F RY+KIII
Sbjct: 448 RDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTGI-GDEFDITKSRYNKIII 506
Query: 366 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 425
+TDADVDGAHIRTLLLTFFYRY K L +EG IY+ PPLY++++GK Y Y DAEL
Sbjct: 507 MTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQIKKGKSHWYVYSDAELTAK 566
Query: 426 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 485
+ +IQR+KGLGEM P QLWETT+NP+ R + Q+ +ED+ EA+ +F+ LMG +
Sbjct: 567 LDEVGRDGT-TIQRYKGLGEMNPEQLWETTMNPDNRTILQVSLEDSIEADKIFTVLMGDK 625
Query: 486 VDTRKELIQNAANLV-NLD 503
V+ R++ I++ A V NLD
Sbjct: 626 VEPRRKFIEDNAKYVRNLD 644
>gi|345862366|ref|ZP_08814591.1| DNA gyrase, B subunit [Desulfosporosinus sp. OT]
gi|344324551|gb|EGW36104.1| DNA gyrase, B subunit [Desulfosporosinus sp. OT]
Length = 659
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/503 (45%), Positives = 346/503 (68%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ+Y+ GKP T +++ + + GT+I F PD +F + +D + +A R+REL+F
Sbjct: 168 YHQEYAIGKP----TSNLVNIGITESSGTKISFIPDPDIFEDTV-YDFDILAHRLRELSF 222
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
LN +TI L +D N + GG++++V++LN +K LH F + + D + +
Sbjct: 223 LNKSVTINL----TDERTNVKETFLHTGGIQDFVRYLNKNKDCLHPQPIFIETIKDHVQV 278
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q+ +D Y++ + YAN+I T +GGTH G K++LTR +N +K+ +K D +L+
Sbjct: 279 EVSMQY-NDGYAENLFSYANNINTQEGGTHEAGFKSALTRVVNDYARKNNIIKAADSNLT 337
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT +ISV+VP+P+FEGQTKT+LGN E+R +VD + E L+ +LE +P +
Sbjct: 338 GDDIREGLTAVISVKVPDPQFEGQTKTKLGNSEIRGIVDSATGEGLSTFLEENPAIARKF 397
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KS+ A +A AA++AR+L R+KS L +SLPGKLADCS P+ E+++VEGDSAGGS
Sbjct: 398 IDKSVQAARARDAARKARELTRRKSALEGTSLPGKLADCSWKEPDLCEMYLVEGDSAGGS 457
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKI+NVE+ + +N EI+ +I A+G G+ E F E RY+
Sbjct: 458 AKQGRDRRFQAILPLRGKIINVEKARLDKILENAEIRAMITAMGTGISDE-FDIEKARYN 516
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLTFFYRY + L + +Y+ PPL+KV++G+ +QY Y D E
Sbjct: 517 KLIIMTDADVDGAHIRTLLLTFFYRYMRPLIENHYVYIAQPPLFKVKKGRDIQYAYSDFE 576
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+ + + IQR+KGLGEM P QLWETT++P +R + Q+ +EDA + +F+ L
Sbjct: 577 LGKILEKIGKDKV-EIQRYKGLGEMNPEQLWETTMDPAKRTILQVTMEDAIRSEEMFTVL 635
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R++ I +A ++ N+D
Sbjct: 636 MGDKVEPRRDFINLHAKDVRNID 658
>gi|417004774|ref|ZP_11943413.1| DNA gyrase subunit B [Streptococcus agalactiae FSL S3-026]
gi|341577756|gb|EGS28163.1| DNA gyrase subunit B [Streptococcus agalactiae FSL S3-026]
Length = 650
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/510 (45%), Positives = 342/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L + D GT + F PD ++FT FD + +A RI+ELAF
Sbjct: 150 YYQEYQRGVVVNDLEI----IGDTDLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAF 205
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I++ ++E + EK EY + GG+ YV+++N +K+ + + + ++DGI
Sbjct: 206 LNRGLRISISDKREGQEVEK----EYHYEGGIGSYVEFINENKEVIFENPIYTDGELDGI 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +
Sbjct: 262 SVEVAMQYTT-GYQETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V
Sbjct: 321 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS E +E+FIVEGDSAG
Sbjct: 381 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF +R
Sbjct: 441 GSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKVR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY---- 415
Y K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G +++
Sbjct: 500 YQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKAYIQP 559
Query: 416 -CYDDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
+ EL++ ++ S + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAE
Sbjct: 560 GVNQEEELRQALDTYSSGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAE 619
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG RV+ R+E I+ A NLD
Sbjct: 620 ADKIFDMLMGDRVEPRREFIEANAVYSNLD 649
>gi|294792391|ref|ZP_06757538.1| DNA gyrase, B subunit [Veillonella sp. 6_1_27]
gi|294456290|gb|EFG24653.1| DNA gyrase, B subunit [Veillonella sp. 6_1_27]
Length = 645
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 241/499 (48%), Positives = 337/499 (67%), Gaps = 12/499 (2%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
++RG T + + + GT + F PD ++F T + F +T+ R++ELAFLN
Sbjct: 156 FARGHK----TSELHEIGKAEGTGTTVIFKPDAEIFETTV-FSFDTLKMRLQELAFLNKG 210
Query: 67 LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLAL 125
L I L D E+ + + + GGL ++ +LN +K+ ++ V+ D + +D+AL
Sbjct: 211 LRITL--SDLRLEEPRVESFHYEGGLVSFITFLNENKEAINPTVINIENTKDDVVVDVAL 268
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
Q+ +D+YS+ +L + N+I TIDGGTH+ G +A+LTRTLN G+KS +K+ + +LSGE V
Sbjct: 269 QY-NDSYSENLLSFVNNINTIDGGTHLSGFRAALTRTLNDYGRKSGLIKESESNLSGEDV 327
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 245
REGLT ++SV+V P+FEGQTKT+LGN EV+ + D V E L + E HP I+ K+
Sbjct: 328 REGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVTEGLKTFFEEHPQDAKKIIEKA 387
Query: 246 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 305
A +A AA++ARDL R+K+ L SSLPGKLADCS +EI++VEGDSAGGSAKQG
Sbjct: 388 TMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSMTEIYLVEGDSAGGSAKQG 447
Query: 306 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 365
RDRR+QAILPLRGKILNVE+ + N EI+++I A G G+ G++F RY+KIII
Sbjct: 448 RDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTGI-GDEFDITKSRYNKIII 506
Query: 366 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 425
+TDADVDGAHIRTLLLTFFYRY K L +EG IY+ PPLY++++GK Y Y DAEL
Sbjct: 507 MTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQIKKGKSHWYVYSDAELTAK 566
Query: 426 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 485
+ +IQR+KGLGEM P QLWETT+NP+ R + Q+ +ED+ EA+ +F+ LMG +
Sbjct: 567 LDEVGRDGT-TIQRYKGLGEMNPEQLWETTMNPDNRTILQVSLEDSIEADKIFTVLMGDK 625
Query: 486 VDTRKELIQNAANLV-NLD 503
V+ R++ I++ A V NLD
Sbjct: 626 VEPRRKFIEDNAKYVRNLD 644
>gi|423070677|ref|ZP_17059453.1| DNA gyrase subunit B [Streptococcus intermedius F0413]
gi|355365233|gb|EHG12957.1| DNA gyrase subunit B [Streptococcus intermedius F0413]
Length = 648
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 232/508 (45%), Positives = 335/508 (65%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG+ V L + DR GT + F PD ++FT ++FD + R++ELAF
Sbjct: 148 HFQEYRRGQVVADLKI----IGETDRTGTTVHFTPDPEIFTETVEFDFEKLNKRVQELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L I++ + E Q +Y + GG+ YVQ++N +K + + + ++D IT+
Sbjct: 204 LNRGLRISITDKREGLE--QTKDYHYEGGIASYVQYINENKDVIFENPIYTDGEMDDITV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 262 EVAIQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLT 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGL +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P V I
Sbjct: 321 GEDVREGLAAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVAKKI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P E+E+FIVEGDSAGGS
Sbjct: 381 IEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPHETELFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 441 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVNKARYQ 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY-----C 416
K++I+TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +V+
Sbjct: 500 KLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYIAQPPIYGVKVGSEVKEYIQPGV 559
Query: 417 YDDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ EL+ + + SIQR+KGLGEM QLWETT+NPE R++ ++ ++DAAEA+
Sbjct: 560 NQEEELQLALERYSEGRSKPSIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEAD 619
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 620 KIFDMLMGDRVEPRREFIEENAVYSTLD 647
>gi|325856512|ref|ZP_08172201.1| DNA gyrase, B subunit [Prevotella denticola CRIS 18C-A]
gi|327313062|ref|YP_004328499.1| DNA gyrase subunit B [Prevotella denticola F0289]
gi|325483481|gb|EGC86454.1| DNA gyrase, B subunit [Prevotella denticola CRIS 18C-A]
gi|326945170|gb|AEA21055.1| DNA gyrase, B subunit [Prevotella denticola F0289]
Length = 657
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 238/517 (46%), Positives = 343/517 (66%), Gaps = 22/517 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + V ++ GTR +FWPD +FTT + F + +A R+RELA+
Sbjct: 146 YQQEYEKGKPLYPVKV----VGETEKTGTRQQFWPDAGIFTTTV-FQWDIVARRMRELAY 200
Query: 63 LNPKLTIALRKEDSDPEKNQY-NEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN + I L DPE + E F A GL+E+V++++ ++ L D V+ + + GI
Sbjct: 201 LNAGIRITLSDLRPDPETGKTRTEVFHAKDGLKEFVRYVDRHRQHLFDDVIYLKTEKQGI 260
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKD 175
I++A+ + +D Y++ + Y N+I TI+GGTH++G +A+LTRTL + SK ++
Sbjct: 261 PIEVAVMYNTD-YTENIHSYVNNINTIEGGTHLQGFRAALTRTLKAYADSDPQISKQIEK 319
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
I ++GE REGLT +IS++V P+FEGQTKT+LGN EV V Q+V E LT+YLE HP
Sbjct: 320 AKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVSGAVQQAVGEALTDYLEEHP 379
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
+ I +K + A A +AA++AR+ V++K+V+ LPGKLADCS+ P++ EIF+VEG
Sbjct: 380 NEAKMICNKVILAATARVAARKARESVQRKNVMSGGGLPGKLADCSNKDPKDCEIFLVEG 439
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGE-D 352
DSAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV+ E D
Sbjct: 440 DSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEAESVMNIIQSIGVRFGVEDEGD 499
Query: 353 FKK--EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG 410
F+ + LRY KIII+TDADVDG+HI TL++T FYRY + ++G +Y+ PPLYK
Sbjct: 500 FEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMPKVIEQGHLYIATPPLYKCTYK 559
Query: 411 KQVQYCYDD----AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQL 466
K +YCY D A L K + QR+KGLGEM P QLWETT++P+ R+LKQ+
Sbjct: 560 KVSEYCYTDQQRQAFLDKYGNGVEDGKTIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQV 619
Query: 467 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
IE+AA+A+ +FS LMG V+ R+E I+ A N+D
Sbjct: 620 TIENAADADEIFSMLMGDDVEPRREFIEKNATYANID 656
>gi|451816904|ref|YP_007453105.1| DNA gyrase subunit B [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451782883|gb|AGF53851.1| DNA gyrase subunit B [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 635
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 243/504 (48%), Positives = 345/504 (68%), Gaps = 15/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ QKYS+GK +T V+ + + D+ GT F PD +F I FD + +A R+RELAF
Sbjct: 143 WQQKYSKGKVLT----EVVKIGNSDQTGTETYFKPDAGIFDEII-FDFDVLAQRLRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
LN + I L D ++ + + GG++ +V +LN +K PLH+ + + V D I +
Sbjct: 198 LNKGIYIEL----IDKRYDKKETFHYEGGIKSFVSYLNRNKVPLHEEPIYIEGVKDKIAV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D Y++ + +AN+I T++GGTH+ G K +LTR N KK +K+ D + +
Sbjct: 254 EIALQY-NDGYTENIFSFANNIDTVEGGTHLVGFKTALTRVFNDYAKKFGHIKENDKNFT 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT +ISV++ P+FEGQTKT+LGN EVR +VD E + +LE +P V I
Sbjct: 313 GDDIREGLTAVISVKIEEPQFEGQTKTKLGNSEVRGIVDSIAGENIGIFLEENPAVGKMI 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AA++AR+L R KSVL S+LPGKLADCSS P E EI+IVEGDSAGGS
Sbjct: 373 VDKALMAARARDAARKARELTR-KSVLERSALPGKLADCSSKDPRECEIYIVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R+FQAILPLRGKILNVE++ + + I++++ A G G+ G DF E +RY
Sbjct: 432 AKQGRNRKFQAILPLRGKILNVEKQRLDRILNADTIRSMVTAFGAGI-GNDFDVEKIRYD 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDADVDGAHIRTLLLTFFYRY K L D+G +Y+ PPLY++ + K+ Y Y D E
Sbjct: 491 RIIIMTDADVDGAHIRTLLLTFFYRYMKQLIDDGHVYIAQPPLYRIIKNKKEYYAYSDKE 550
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L++V + IQR+KGLGEM +QLW+TT++PE+R+L ++ +EDA A+ +F+
Sbjct: 551 LEQVLQEVGGKDNSTDIQRYKGLGEMNAIQLWDTTMDPEKRILLKVNVEDAMAADEIFTI 610
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ RK+ I QNA +VNLD
Sbjct: 611 LMGEKVEPRKDFIQQNAKYVVNLD 634
>gi|257062759|ref|YP_003142431.1| DNA gyrase subunit B [Slackia heliotrinireducens DSM 20476]
gi|256790412|gb|ACV21082.1| DNA gyrase subunit B [Slackia heliotrinireducens DSM 20476]
Length = 648
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 241/513 (46%), Positives = 336/513 (65%), Gaps = 14/513 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y +SRGK V L + + GT + FWPD ++FT + +D+ T+ R RE+A
Sbjct: 143 KYGIAFSRGKTVEKLH----QIGTSKTTGTTVTFWPDPEIFTDTLVYDYETLQERFREMA 198
Query: 62 FLNPKLTIALRKE-DSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGI 119
FLN L I L E D E N +E F + GG+ ++V++LN K+ L+ + F +
Sbjct: 199 FLNKGLRIELTDERQQDEEGNFKHETFKYDGGIVDFVKYLNQGKETLNKPIYFEAENADG 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
T+++ +QW + ++ ++ +AN+I T +GGTH++G K +LTRT+N + +K+KD +
Sbjct: 259 TVEVVMQWSTSYGTNGIMAFANNINTHEGGTHLDGFKNALTRTINDYARSKGLLKEKDKN 318
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+G+ REGL IISV++ +P+FEGQTKT+LGN E+R +V +V + L+EYLE +P
Sbjct: 319 LTGDDAREGLAAIISVKLHDPQFEGQTKTKLGNVEIRGLVQGAVTKGLSEYLEENPTPAK 378
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K+ ALKA AA++AR++ R+K VL S S+PGKLADCSS P SE+FIVEGDSAG
Sbjct: 379 RIVGKASQALKAREAARKAREMTRRKGVLDSFSMPGKLADCSSREPALSEMFIVEGDSAG 438
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQ RDR++QAILPLRGKILNVER ++ I +LI A+G + G+D+ + R
Sbjct: 439 GSAKQARDRKYQAILPLRGKILNVERAGLHRALSSDTISSLITAIGTNI-GDDYNGDNAR 497
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVER-----GKQVQ 414
YH+III+TDADVDGAHIR LLLTFFYRY L + G IY+ PPLY +++ GK ++
Sbjct: 498 YHRIIIMTDADVDGAHIRCLLLTFFYRYMPDLINRGYIYIAQPPLYGLKKKNSASGKILK 557
Query: 415 YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
Y Y+D ++ + Y IQR+KGLGEM P QLWETT+ PE R L Q+ IEDAA A
Sbjct: 558 YIYNDEAKDQIMAQLEDPDKYDIQRYKGLGEMDPEQLWETTMEPETRTLIQVSIEDAAAA 617
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
S LMG V+ RKE IQ N +++ LDI
Sbjct: 618 ERAVSDLMGDDVEPRKEFIQK--NALDVRFLDI 648
>gi|433653751|ref|YP_007297459.1| DNA gyrase, B subunit [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433291940|gb|AGB17762.1| DNA gyrase, B subunit [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 633
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 236/503 (46%), Positives = 342/503 (67%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QKY RG P + L + D GT IRF PD ++F T +++D++ ++ R+REL+F
Sbjct: 142 YEQKYERGVPKSELKI----IGDTDETGTMIRFKPDDEIFET-LEYDYDVLSQRLRELSF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I L E E + + + GG+ E+V++LN +K+ LH + + D +
Sbjct: 197 LNKGVRIRLMDERDGKE----DVFHYEGGIVEFVKYLNRNKEVLHPEPIYMESKSDTYEV 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+Y++ + +AN+I T +GGTH+ G KA+LT+ +N +K +KD D +L
Sbjct: 253 EVAMQY-NDSYTENIFSFANNIDTREGGTHLIGFKAALTKVINDYARKFNIIKDNDKNLQ 311
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IISV++ NP+FEGQTKT+LGN E+R +VD V E LT ++E +P + I
Sbjct: 312 GEDVREGLTAIISVKLMNPQFEGQTKTKLGNSEMRSIVDSVVTEKLTAFMEENPSLSKVI 371
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K+ SA +A AA++AR+L R+KS L S+SLPGKLADCS + E+++VEGDSAGGS
Sbjct: 372 LEKATSAARAREAARKARELTRRKSALESTSLPGKLADCSEKDASKCELYLVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRD R+QAILPLRGKILNVE+ + ++EI+ +I ALG G+ G DF LRYH
Sbjct: 432 AKMGRDSRYQAILPLRGKILNVEKARLDRILSSDEIKAMITALGTGI-GSDFDISKLRYH 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDG+HIRTLLLTFFYR+ + L + G +Y+ PPLYK+E+ K+V Y Y D E
Sbjct: 491 KVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYIAQPPLYKIEKNKKVYYAYSDKE 550
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + Y++QR+KGLGEM QLW+TT++P +R + ++ ++DA A+ +F+ L
Sbjct: 551 LDNILKEIGREN-YNVQRYKGLGEMDAEQLWDTTMDPGKRTMLKVSLDDAIAADEIFTIL 609
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R+E I+ A V NLD
Sbjct: 610 MGDKVEPRREFIEKYAKTVRNLD 632
>gi|383111025|ref|ZP_09931843.1| DNA gyrase, B subunit [Bacteroides sp. D2]
gi|313694595|gb|EFS31430.1| DNA gyrase, B subunit [Bacteroides sp. D2]
Length = 652
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 233/511 (45%), Positives = 337/511 (65%), Gaps = 17/511 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y GKP+ + V V + D GTR +FWPD +FT + +D+ +A R+RELA+
Sbjct: 148 YQQEYEIGKPLYS----VKEVGTADITGTRQQFWPDNTIFTETV-YDYKILASRLRELAY 202
Query: 63 LNPKLTIALRKEDSDPEKNQYN--EYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I L E + +++ GL E+V+++ + ++ L +DV+ + GI
Sbjct: 203 LNAGLRITLTDRRVVNEDGSFKGEQFYSEEGLREFVRFIESSREHLINDVIYLNSEKQGI 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I++A+ + + +S+ + Y N+I TI+GGTH+ G + +LTRTL + SK ++ +
Sbjct: 263 PIEVAIMYNT-GFSENVHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDSKMLEKVKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT +ISV+V P+FEGQTKT+LGN EV VDQ+V E L YLE HP
Sbjct: 322 ISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEVLAYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A A AA++AR++V++KS + LPGKLADCS + E+F+VEGDSAG
Sbjct: 382 TIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDATKCELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA-- 357
G+AKQGR+R FQAILPLRGKILNVE+ +++EI+N+ ALG+ + E+ KEA
Sbjct: 442 GTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYTALGVTIGTEEDSKEANI 501
Query: 358 --LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
LRYHKIII+TDADVDG+HI TL++TFF+RY + G +Y+ PPLY ++GK +Y
Sbjct: 502 QKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLYIATPPLYLCKKGKVEEY 561
Query: 416 CYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
C+ DA+ +K ++ NA+++ QR+KGLGEM QLWETT++PE RMLKQ+ I++AA
Sbjct: 562 CWTDAQRQKFIDTYGGGSENAVHT-QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAA 620
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ +FS LMG V R+E I+ A N+D
Sbjct: 621 EADYIFSMLMGEDVGPRREFIEENATYANID 651
>gi|390933679|ref|YP_006391184.1| DNA topoisomerase IV subunit B [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389569180|gb|AFK85585.1| DNA topoisomerase IV, B subunit [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 633
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 237/503 (47%), Positives = 341/503 (67%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QKY RG P T LT + D GT I F PD ++F T +++D++ ++ R+REL+F
Sbjct: 142 YQQKYERGVPKTDLTV----IGETDETGTTITFSPDGEIFET-LEYDYDVLSQRLRELSF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I L E E + + + GG+ E+V++LN +K+ LH + + D +
Sbjct: 197 LNKGVKIRLVDERDGKE----DVFHYEGGVVEFVKYLNRNKEVLHPEPIYMESKSDTYEV 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y++ + +AN+I T +GGTH+ G K +LT+ +N +K +K+ D +L
Sbjct: 253 EVAMQY-NDTYTENIFSFANNIDTREGGTHLIGFKTALTKVINDYARKFNIIKENDKNLQ 311
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IISV++ NP+FEGQTKT+LGN E+R +VD V E LT ++E +P + I
Sbjct: 312 GEDVREGLTAIISVKLMNPQFEGQTKTKLGNSEMRSIVDSVVTEKLTAFMEENPSLSKVI 371
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K+ SA +A AA++AR+L R+KS L S+SLPGKLADCS + E+++VEGDSAGGS
Sbjct: 372 LEKATSAARAREAARKARELTRRKSALESTSLPGKLADCSEKDASKCELYLVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRD R+QAILPLRGKILNVE+ + ++EI+ +I ALG G+ G DF LRYH
Sbjct: 432 AKMGRDSRYQAILPLRGKILNVEKARLDRILSSDEIKAMITALGTGI-GSDFDISKLRYH 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDG+HIRTLLLTFFYR+ + L + G IY+ PPLYK+E+ K+V Y Y D E
Sbjct: 491 KVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNIYIAQPPLYKIEKNKKVYYAYSDKE 550
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + Y++QR+KGLGEM QLW+TT++PE+R + ++ ++DA A+ +F+ L
Sbjct: 551 LDNILKEIGREN-YNVQRYKGLGEMDAEQLWDTTMDPEKRTMLKVSLDDAIAADEIFTIL 609
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R+E I+ A V NLD
Sbjct: 610 MGDKVEPRREFIEKYAKTVRNLD 632
>gi|374294499|ref|YP_005044690.1| DNA gyrase subunit B [Clostridium clariflavum DSM 19732]
gi|359823993|gb|AEV66766.1| DNA gyrase subunit B [Clostridium clariflavum DSM 19732]
Length = 641
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 242/504 (48%), Positives = 341/504 (67%), Gaps = 12/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK V+ L + DR GT+ F PD +F I+FD+ T+ R RELAF
Sbjct: 146 YRQRYERGKVVSKLEV----IGKTDRTGTKTTFKPDPLIFE-KIEFDYETLLNRFRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN LTI L D E+ E + GG+ +V+ LN +K+ +H + F DG +
Sbjct: 201 LNKGLTIRLI--DKRKEEPVVKELHYEGGIISFVEHLNRNKEVIHQPPIYFESLKDGNHV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y++ + +AN+I T +GGTH+ G K ++T+ N +K +K+ D +L
Sbjct: 259 EIAMQY-NDTYNENIYSFANNIATTEGGTHLTGFKTAITKVFNDYCRKYNYLKENDKNLL 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV++ P+FEGQTKT+LGN E+R +V+ +V E L+ +LE +P + +I
Sbjct: 318 GEDVREGLTAVISVKLHEPQFEGQTKTKLGNSEIRSLVENAVSEKLSAFLEENPSIAKAI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KS++A +A AA++AR++ R+KS L S++LPGKLADCS P EI+IVEGDSAGGS
Sbjct: 378 VEKSITAARAREAARKAREMTRRKSALESTTLPGKLADCSEKDPSLCEIYIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPL GK+LNVE+ +Y NE++ +I ALG + GEDF E LRYH
Sbjct: 438 AKQGRDRRFQAILPLWGKMLNVEKSRIDKVYTNEKLLPVITALGANI-GEDFDIEKLRYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+ DADVDG HIRTLLLTF YRY + L + G +Y+ PPL+K+ +GK+ Y Y++ +
Sbjct: 497 KIIIMADADVDGQHIRTLLLTFLYRYMRPLVEGGYVYIAQPPLFKITKGKEEVYAYNEKQ 556
Query: 422 LKKV-KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L+K+ +IQR+KGLGEM P QLWETT+NP+ R + ++ ++DA A+ +FS
Sbjct: 557 LEKILNEKGWKKGECTIQRYKGLGEMNPEQLWETTMNPKTRSMLRVELKDAIAADEIFSI 616
Query: 481 LMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ RKE IQ NA ++ NLD
Sbjct: 617 LMGEKVEPRKEFIQANAKDVTNLD 640
>gi|189464548|ref|ZP_03013333.1| hypothetical protein BACINT_00891 [Bacteroides intestinalis DSM
17393]
gi|189438338|gb|EDV07323.1| DNA gyrase, B subunit [Bacteroides intestinalis DSM 17393]
Length = 653
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/511 (45%), Positives = 338/511 (66%), Gaps = 16/511 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y G P+ V + + D GTR +FWPD +FT + +++ +A R+RELA+
Sbjct: 148 YQQEYECGHPLYP----VKEIGTSDITGTRQQFWPDNTIFTDTV-YNYEILATRMRELAY 202
Query: 63 LNPKLTIALRK-EDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN + I L D E N E F++ GL+E+V+++++ ++ L +DV+ + G
Sbjct: 203 LNAGIKITLTDLRVKDEENNAKMEIFYSEEGLKEFVRYIDSSREHLVNDVIYINTEKQGT 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+ + + +Y++ + Y N+I TI+GGTH+ G + +LTRTL +K ++ +
Sbjct: 263 PVEVAIMYNT-SYNENIHSYVNNINTIEGGTHLAGFRRALTRTLKKYADDNKMLEKAKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
++G+ REGLT +IS++V P+FEGQTKT+LGN EV VDQ+V E L YLE HP
Sbjct: 322 IAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVMGAVDQAVGEALNYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K + A +A +AA++AR+ V++KS + +PGKLADCSS PEE E+F+VEGDSAG
Sbjct: 382 MVVDKVILAAQARVAARKARESVQRKSPMSGGGMPGKLADCSSKDPEECELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFKK-- 355
GSAKQGRDRRFQAILPLRGKILNVE+ ++++E+ N+I+ALG+ GV ED K+
Sbjct: 442 GSAKQGRDRRFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQALGIRFGVNTEDSKEAN 501
Query: 356 -EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY K+II+TDADVDG+HI TL++T F+RY + G +Y+ PPLY ++GK +
Sbjct: 502 IDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQVIRNGYLYIATPPLYLCKKGKVEE 561
Query: 415 YCYDDAELKKVKSSF--PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
YC+ D + +K ++ S + QR+KGLGEM P QLW TT+NPE RMLKQ+ IE+AA
Sbjct: 562 YCWTDQQRQKFIDTYGGGSESAVHTQRYKGLGEMNPEQLWSTTMNPENRMLKQISIENAA 621
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLVNLD 503
E + +FS LMG V R+E I+ A N+D
Sbjct: 622 EVDYIFSMLMGEDVGPRREFIEKNATYANID 652
>gi|227498783|ref|ZP_03928923.1| type IIA topoisomerase [Acidaminococcus sp. D21]
gi|352683418|ref|YP_004895401.1| type IIA topoisomerase [Acidaminococcus intestini RyC-MR95]
gi|226904235|gb|EEH90153.1| type IIA topoisomerase [Acidaminococcus sp. D21]
gi|350278071|gb|AEQ21261.1| type IIA topoisomerase [Acidaminococcus intestini RyC-MR95]
Length = 648
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/507 (48%), Positives = 343/507 (67%), Gaps = 19/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y ++S+GK V L D+KD GT + FWPD +FT + + + T+ RIRELAF
Sbjct: 154 YGIEFSKGKTVRPLYVKG-ECDAKD-TGTSVHFWPDDTIFTETV-YSYETLKHRIRELAF 210
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I L+ + S ++ + + GG+ +V+++N K+ + + V G R+D
Sbjct: 211 LNKGVKIELKDDRSGADEI----FHYEGGIISFVEYINKGKEAIFNTPIYVEGERQDT-- 264
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+++A+Q+ +DAY++ + + N+I T +GGTH+ G+K +LTR++N +K+ +KD +
Sbjct: 265 -IVEVAMQY-TDAYTENIYTFVNNINTEEGGTHLAGLKQALTRSINDYARKNGLLKDSEE 322
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSG+ VREGLTC++S++V P+FEGQTKT+LGN EVR +VD V + L EY E +
Sbjct: 323 NLSGDDVREGLTCVLSLKVREPQFEGQTKTKLGNSEVRGIVDNMVSDALNEYFEENAPTA 382
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K++ + +A AA++ARDL R+KS L SSLPGKLADCSS EE+EI+IVEGDSA
Sbjct: 383 KKIVEKAILSSRARAAARKARDLTRRKSALEVSSLPGKLADCSSKNAEETEIYIVEGDSA 442
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILPLRGKILNVE+ M N EI+++I A G G+ G++F +
Sbjct: 443 GGSAKQGRDRAFQAILPLRGKILNVEKARLDKMLNNNEIRSMITAFGCGI-GDEFDLSKI 501
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RY KIII+TDADVDGAHIRTLLLTFFYRY + L G +++ PPLY + GK Y Y
Sbjct: 502 RYGKIIIMTDADVDGAHIRTLLLTFFYRYMQPLIRNGNVFIAQPPLYLIRTGKNHTYAYS 561
Query: 419 DAEL-KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
D EL KK+ N Y +QR+KGLGEM P QLWETT++P +R + Q+ +EDAA A+ V
Sbjct: 562 DDELQKKLDEVGRQNNPY-VQRYKGLGEMNPEQLWETTMDPSKRTVLQVHLEDAASADSV 620
Query: 478 FSSLMGARVDTRKELI-QNAANLVNLD 503
FS LMG +V+ R++ I +NA + NLD
Sbjct: 621 FSVLMGDKVEPRRQFIEENAGKVTNLD 647
>gi|348025743|ref|YP_004765548.1| DNA gyrase subunit B [Megasphaera elsdenii DSM 20460]
gi|341821797|emb|CCC72721.1| DNA gyrase subunit B [Megasphaera elsdenii DSM 20460]
Length = 639
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 236/490 (48%), Positives = 341/490 (69%), Gaps = 15/490 (3%)
Query: 20 VLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPE 79
+ P+++ + GT++ F PD ++F + +D NT+ R+RELAFLN L I L + +
Sbjct: 158 IRPLEAGEETGTKVSFKPDHEIFPDTV-YDFNTLKTRLRELAFLNKGLHITLTDKRGE-- 214
Query: 80 KNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDG----ITIDLALQWCSDAYSDT 135
+ Y + GGL +V++LN + ++ + +VDG + +D+A+Q+ +D YS+
Sbjct: 215 -GKSEVYCYEGGLTSFVEFLNQSHQAVNPTI---INVDGEKNKVIVDIAMQY-NDGYSEN 269
Query: 136 MLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 195
+L + N I T +GGTH+ G ++ LTRT+N G+ + +K+ + +LSGE VREGLT +ISV
Sbjct: 270 ILTFVNDIFTEEGGTHLSGFRSGLTRTINDYGRSAGIIKENEDNLSGEDVREGLTAVISV 329
Query: 196 RVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAA 255
+V P+FEGQTKT+LGN EV+ +VD + + L E+ E HP +I++K++SA +A AA
Sbjct: 330 KVREPQFEGQTKTKLGNSEVKGIVDNIISDGLKEFFEEHPSEAKAIITKTISASRARQAA 389
Query: 256 KRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILP 315
+RAR+L R+K+ L SSLPGKLADCS P+++EI++VEGDSAGGSAKQGRDRRFQAILP
Sbjct: 390 RRARELTRRKNALEISSLPGKLADCSEKNPDQTEIYLVEGDSAGGSAKQGRDRRFQAILP 449
Query: 316 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAH 375
LRGKI+NVE+ + N+EI+++I A G G+ G++F RY KIII+TDADVDGAH
Sbjct: 450 LRGKIINVEKARLDKILANDEIRSMITAFGTGI-GQEFDLSKRRYDKIIIMTDADVDGAH 508
Query: 376 IRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELK-KVKSSFPSNAL 434
IRTLLLTFFYR+ K L +G +Y+ PPLY+V +GKQV Y Y D ++ K+ N
Sbjct: 509 IRTLLLTFFYRFMKPLITDGHVYIAQPPLYQVRKGKQVWYFYTDESMQAKLDELGRDNNS 568
Query: 435 YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI- 493
+QR+KGLGEM P QLWETT++PE R + ++ +EDAAEA+ +FS LMG +V+ R++ I
Sbjct: 569 VVVQRYKGLGEMNPEQLWETTMDPENRTMLKVELEDAAEADRIFSVLMGDKVEPRRKFIE 628
Query: 494 QNAANLVNLD 503
+NA + NLD
Sbjct: 629 ENAKKVRNLD 638
>gi|227891673|ref|ZP_04009478.1| DNA gyrase subunit B [Lactobacillus salivarius ATCC 11741]
gi|227866476|gb|EEJ73897.1| DNA gyrase subunit B [Lactobacillus salivarius ATCC 11741]
Length = 652
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 244/506 (48%), Positives = 336/506 (66%), Gaps = 9/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y + GK T++T V+ + GT + F PD +FT +D N + RIRELAF
Sbjct: 155 YGMDFKLGKVATSMT--VVGKCPRHEHGTIVHFKPDPDIFTETTTYDINVLTKRIRELAF 212
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I + +D E+ + E+ +AGG++ Y+++LN K+ + + + + +GIT+
Sbjct: 213 LNKGLKITI--DDKRQEEPTHEEFHYAGGIKHYIEFLNKGKEVIFPEPIYVEGEQNGITV 270
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D +S+ +L + N+I T +GGTH G K +LTR +N G+KS +K+ D +LS
Sbjct: 271 EVALQYTNDFHSN-LLSFTNNIHTYEGGTHESGFKTALTRVINDYGRKSGLIKENDANLS 329
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT ++S++ PNP+FEGQTKT+LGN + RKV D+ E +++ +P V I
Sbjct: 330 GEDVREGLTAVVSIKHPNPQFEGQTKTKLGNSDARKVTDKLFSETFNKFMLENPTVAKQI 389
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A KA +AAKRAR++ R+K+ L S+LPGKLAD +S PE SE+FIVEGDSAGGS
Sbjct: 390 VEKGLLAAKARIAAKRAREVTRKKNGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGS 449
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R QAILP+RGKILNVE+ + NEEI++L ALG G GE+F YH
Sbjct: 450 AKQGRSRLTQAILPIRGKILNVEKATIDRILANEEIRSLFTALGTGF-GEEFDVSKANYH 508
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLT YR+ K + D G +Y+ PPLY+V +GK ++Y D E
Sbjct: 509 KLIIMTDADVDGAHIRTLLLTLIYRFMKPMLDAGYVYIAQPPLYQVRQGKMIKYIDSDEE 568
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L V S PS+ IQR+KGLGEM QLWETT+NPE R L ++ + DA EAN VF L
Sbjct: 569 LNDVLGSLPSSPKPVIQRYKGLGEMDAEQLWETTMNPENRRLLRVELSDAEEANEVFEML 628
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG V R++ I++ A VN +LD+
Sbjct: 629 MGDHVGPRRQFIEDNATFVN--NLDV 652
>gi|53711588|ref|YP_097580.1| DNA gyrase B subunit [Bacteroides fragilis YCH46]
gi|60679839|ref|YP_209983.1| DNA gyrase subunit B [Bacteroides fragilis NCTC 9343]
gi|265764971|ref|ZP_06093246.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_16]
gi|336407776|ref|ZP_08588272.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_56FAA]
gi|375356678|ref|YP_005109450.1| DNA gyrase subunit B [Bacteroides fragilis 638R]
gi|383116590|ref|ZP_09937338.1| DNA gyrase, B subunit [Bacteroides sp. 3_2_5]
gi|423248251|ref|ZP_17229267.1| DNA gyrase, B subunit [Bacteroides fragilis CL03T00C08]
gi|423253200|ref|ZP_17234131.1| DNA gyrase, B subunit [Bacteroides fragilis CL03T12C07]
gi|423259366|ref|ZP_17240289.1| DNA gyrase, B subunit [Bacteroides fragilis CL07T00C01]
gi|423263662|ref|ZP_17242665.1| DNA gyrase, B subunit [Bacteroides fragilis CL07T12C05]
gi|423269860|ref|ZP_17248832.1| DNA gyrase, B subunit [Bacteroides fragilis CL05T00C42]
gi|423272686|ref|ZP_17251633.1| DNA gyrase, B subunit [Bacteroides fragilis CL05T12C13]
gi|423282448|ref|ZP_17261333.1| DNA gyrase, B subunit [Bacteroides fragilis HMW 615]
gi|52214453|dbj|BAD47046.1| DNA gyrase B subunit [Bacteroides fragilis YCH46]
gi|60491273|emb|CAH06021.1| DNA gyrase subunit B [Bacteroides fragilis NCTC 9343]
gi|251948137|gb|EES88419.1| DNA gyrase, B subunit [Bacteroides sp. 3_2_5]
gi|263254355|gb|EEZ25789.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_16]
gi|301161359|emb|CBW20899.1| DNA gyrase subunit B [Bacteroides fragilis 638R]
gi|335944855|gb|EGN06672.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_56FAA]
gi|387776946|gb|EIK39046.1| DNA gyrase, B subunit [Bacteroides fragilis CL07T00C01]
gi|392657100|gb|EIY50737.1| DNA gyrase, B subunit [Bacteroides fragilis CL03T12C07]
gi|392660358|gb|EIY53972.1| DNA gyrase, B subunit [Bacteroides fragilis CL03T00C08]
gi|392700706|gb|EIY93868.1| DNA gyrase, B subunit [Bacteroides fragilis CL05T00C42]
gi|392707084|gb|EIZ00204.1| DNA gyrase, B subunit [Bacteroides fragilis CL07T12C05]
gi|392708600|gb|EIZ01706.1| DNA gyrase, B subunit [Bacteroides fragilis CL05T12C13]
gi|404582016|gb|EKA86711.1| DNA gyrase, B subunit [Bacteroides fragilis HMW 615]
Length = 652
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 233/511 (45%), Positives = 339/511 (66%), Gaps = 17/511 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y GKP+ V V D GT+ +FWPD +FT I +D+ +A R+RELA+
Sbjct: 148 YQQEYEIGKPLYP----VKEVGIADHTGTKQQFWPDDSIFTETI-YDYKILASRLRELAY 202
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I+L R+ ++ ++ ++ GL E+V+++ + ++ L +DV+ + I
Sbjct: 203 LNAGLRISLTDRRVVNEDGSFKHETFYSEEGLREFVRFIESSREHLINDVIYLNTEKQNI 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I++A+ + + +S+ + Y N+I TI+GGTH+ G + +LTRTL + SK ++ +
Sbjct: 263 PIEVAIMYNT-GFSENIHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDSKMLEKVKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT +ISV+V P+FEGQTKT+LGN EV VDQ+V E L YLE HP
Sbjct: 322 ISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEVLNYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A A AA++AR++V++KS + LPGKLADCS P++ E+F+VEGDSAG
Sbjct: 382 AIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDPQKCELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA-- 357
G+AKQGR+R FQAILPLRGKILNVE+ ++EEI+N+ ALG+ + E+ K A
Sbjct: 442 GTAKQGRNRAFQAILPLRGKILNVEKAMYHKALESEEIRNIYTALGVTIGTEEDSKAANI 501
Query: 358 --LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
LRYHKIII+TDADVDG+HI TL++TFF+RY + G +Y+ PPLY ++GK +Y
Sbjct: 502 DKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLYIATPPLYLCKKGKIEEY 561
Query: 416 CYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
C+ DA+ +K ++ NA+++ QR+KGLGEM QLWETT++PE RMLKQ+ I++AA
Sbjct: 562 CWTDAQRQKFIDTYGGGSENAIHT-QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAA 620
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ +FS LMG V R+E I+ A N+D
Sbjct: 621 EADYIFSMLMGEDVGPRREFIEENATYANID 651
>gi|393782285|ref|ZP_10370470.1| DNA gyrase, B subunit [Bacteroides salyersiae CL02T12C01]
gi|392673556|gb|EIY67015.1| DNA gyrase, B subunit [Bacteroides salyersiae CL02T12C01]
Length = 655
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 233/511 (45%), Positives = 338/511 (66%), Gaps = 17/511 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y GKP+ V V + GTR +FWPD +FT + + + +AGR+RELA+
Sbjct: 151 YQQEYEIGKPLYP----VKEVGVSEHTGTRQQFWPDNTIFTETV-YKYEILAGRMRELAY 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAG--GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN + I L + ++ Q+ + F GL+E+V++L + + L +DV+ + GI
Sbjct: 206 LNAGIKITLTDRRTVNDEGQFKQEVFYSEEGLKEFVRYLESSRDHLINDVIYLNTEKQGI 265
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I++A+ + + +S+++ Y N+I TI+GGTH+ G + +LTRTL + SK ++ +
Sbjct: 266 PIEVAIMYNT-GFSESIHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDSKMLEKVKVE 324
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
++G+ REGLT +ISV+V P+FEGQTKT+LGN EV VDQ+V E L+ YLE HP
Sbjct: 325 IAGDDFREGLTGVISVKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEALSYYLEEHPKEAK 384
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A A AA++AR++V++KS + LPGKLADCS + E+F+VEGDSAG
Sbjct: 385 QIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDATKCELFLVEGDSAG 444
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA-- 357
G+AKQGR+R FQAILPLRGKILNVE+ ++EEI+N+ ALG+ + E+ K A
Sbjct: 445 GTAKQGRNRAFQAILPLRGKILNVEKAMYHKALESEEIRNIYTALGVTIGTEEDSKAANI 504
Query: 358 --LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
LRYHKIII+TDADVDG+HI TL++TFF+RY + G +Y+ PPLY ++GK +Y
Sbjct: 505 DKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLYIATPPLYLCKKGKIEEY 564
Query: 416 CYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
C+ DA+ +K ++ NA+++ QR+KGLGEM QLWETT++PE RMLKQ+ IE+AA
Sbjct: 565 CWTDAQRQKFIDTYGGGSENAVHT-QRYKGLGEMNAQQLWETTMDPENRMLKQVNIENAA 623
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ +FS LMG V R+E I++ A N+D
Sbjct: 624 EADYIFSMLMGEDVGPRREFIEDNATYANID 654
>gi|418960404|ref|ZP_13512292.1| DNA gyrase subunit B [Lactobacillus salivarius SMXD51]
gi|380345080|gb|EIA33425.1| DNA gyrase subunit B [Lactobacillus salivarius SMXD51]
Length = 652
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 243/506 (48%), Positives = 336/506 (66%), Gaps = 9/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y + GK T++T V+ + GT + F PD +FT +D N + RIRELAF
Sbjct: 155 YGMDFKLGKVATSMT--VVGKCPRHEHGTIVHFKPDPDIFTETTTYDINVLTKRIRELAF 212
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I + +D E+ + E+++AGG++ Y+++LN K+ + + + + +GIT+
Sbjct: 213 LNKGLKITI--DDKRQEEPTHEEFYYAGGIKHYIEFLNKGKEVIFPEPIYVEGEQNGITV 270
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D +S+ +L + N+I T +GGTH G K +LTR +N G+KS +K+ D +LS
Sbjct: 271 EVALQYTNDFHSN-LLSFTNNIHTYEGGTHESGFKTALTRVINDYGRKSGLIKENDANLS 329
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT ++S++ PNP+FEGQTKT+LGN + RKV D+ E +++ +P V I
Sbjct: 330 GEDVREGLTAVVSIKHPNPQFEGQTKTKLGNSDARKVTDKLFSETFNKFMLENPTVAKQI 389
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A KA +AAKRAR++ R+K+ L S+LPGKLAD +S PE SE+FIVEGDSAGGS
Sbjct: 390 VEKGLLAAKARIAAKRAREVTRKKNGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGS 449
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R QAILP+RGKILNVE+ + NEEI++L ALG G GE+F YH
Sbjct: 450 AKQGRSRLTQAILPIRGKILNVEKATIDRILANEEIRSLFTALGTGF-GEEFDVSKANYH 508
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLT YR+ K + D G +Y+ PPLY+V +GK ++Y D E
Sbjct: 509 KLIIMTDADVDGAHIRTLLLTLIYRFMKPMLDAGYVYIAQPPLYQVRQGKMIKYIDSDEE 568
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L V S P + IQR+KGLGEM QLWETT+NPE R L ++ + DA EAN VF L
Sbjct: 569 LNDVLGSLPPSPKPVIQRYKGLGEMDAEQLWETTMNPENRRLLRVELSDAEEANEVFEML 628
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG V R++ I++ A VN +LD+
Sbjct: 629 MGDHVGPRRQFIEDNATFVN--NLDV 652
>gi|221632838|ref|YP_002522060.1| DNA gyrase subunit B [Thermomicrobium roseum DSM 5159]
gi|221156882|gb|ACM06009.1| DNA gyrase, B subunit [Thermomicrobium roseum DSM 5159]
Length = 636
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 241/503 (47%), Positives = 336/503 (66%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ+Y RG PVT + + + D GT F PD+ +F + + + + + R RE+A+
Sbjct: 143 YHQRYERGVPVTPV--ETIGETTPDDHGTETVFLPDRLIFRS-LDYQSDVLLQRFREVAY 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITI 121
L LTI E +D + ++F GG+ +V+ LN K+ L + +++ +G +
Sbjct: 200 LTSGLTIHFVDERTDLDMT----FYFEGGIVSFVRHLNRTKEVLQPQPFYVKREQNGCLV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D Y+++ +AN+I TIDGGTH+ G KA+LTR +N ++ +K+ D +LS
Sbjct: 256 EVAIQY-TDGYAESTHAFANNINTIDGGTHVTGFKAALTRAINEYARRHGLLKENDPNLS 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IISV +P P+FEGQTKT+LGN EV +V V E T YLE HP + I
Sbjct: 315 GEDVREGLTAIISVMLPEPQFEGQTKTKLGNAEVAGIVQSIVYESFTSYLEEHPAIARRI 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L+A +A AA++AR+LV++K L + SLPGKLADC+ P ++E++IVEGDSAGGS
Sbjct: 375 IEKCLTAARAREAARKARELVQRKGALDTFSLPGKLADCTERDPAKAELYIVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQA+LPLRGKILNVE+ M NEEI+ LI ALG G+ G+ + + LRYH
Sbjct: 435 AKQGRDRRFQAVLPLRGKILNVEKARLDRMLHNEEIRALITALGTGI-GDQYDRSKLRYH 493
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
++I++TDADVDGAHIRTLLLTFF+RY + L +G +Y+ PPLY+++ GK+V Y Y D E
Sbjct: 494 RVILMTDADVDGAHIRTLLLTFFFRYLEGLIIDGHLYIAQPPLYRLQSGKEVHYVYSDEE 553
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
+ + + IQR+KGLGEM P QLWETT++P +R L Q+ IEDA A+ F+ L
Sbjct: 554 RDAILNR-GDGKTWDIQRYKGLGEMNPEQLWETTMDPARRTLLQVTIEDAVRADETFNML 612
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG+ V RK IQ A V NLD
Sbjct: 613 MGSAVPPRKRFIQAHAREVRNLD 635
>gi|333895870|ref|YP_004469744.1| DNA topoisomerase IV subunit B [Thermoanaerobacterium xylanolyticum
LX-11]
gi|333111135|gb|AEF16072.1| DNA topoisomerase IV, B subunit [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 633
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 236/503 (46%), Positives = 342/503 (67%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QKY RG P T LT + D GT I F PD ++F T +++D++ ++ R+REL+F
Sbjct: 142 YQQKYERGVPKTDLTV----IGETDETGTTITFSPDGEIFET-LEYDYDVLSQRLRELSF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I L E E + + + GG+ E+V++LN +K+ LH + + D +
Sbjct: 197 LNKGVKIRLVDERDGKE----DVFHYEGGIVEFVKYLNRNKEVLHPEPIYMESKSDTYEV 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+Y++ + +AN+I T +GGTH+ G K +LT+ +N +K +K+ D +L
Sbjct: 253 EVAMQY-NDSYTENIFSFANNIDTREGGTHLIGFKTALTKVINDYARKFNIIKENDKNLQ 311
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IISV++ NP+FEGQTKT+LGN E+R +VD V E LT ++E +P + I
Sbjct: 312 GEDVREGLTAIISVKLMNPQFEGQTKTKLGNSEMRSIVDSVVTEKLTAFMEENPSLSKVI 371
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K+ SA +A AA++AR+L R+KS L S+SLPGKLADCS + E+++VEGDSAGGS
Sbjct: 372 LEKATSAARAREAARKARELTRRKSALESTSLPGKLADCSEKDASKCELYLVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRD ++QAILPLRGKILNVE+ + ++EI+ +I ALG G+ G DF LRYH
Sbjct: 432 AKMGRDSKYQAILPLRGKILNVEKARLDRILSSDEIKAMITALGTGI-GSDFDISKLRYH 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDG+HIRTLLLTFFYR+ + L + G IY+ PPLYK+E+ K+V Y Y D E
Sbjct: 491 KVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNIYIAQPPLYKIEKNKKVYYAYSDKE 550
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + Y++QR+KGLGEM QLW+TT++PE+R + ++ ++DA A+ +F+ L
Sbjct: 551 LDNILKEIGREN-YNVQRYKGLGEMDAEQLWDTTMDPEKRTMLKVSLDDAIAADEIFTIL 609
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R+E I+ A V NLD
Sbjct: 610 MGDKVEPRREFIEKYAKTVRNLD 632
>gi|339006714|ref|ZP_08639289.1| DNA gyrase subunit B [Brevibacillus laterosporus LMG 15441]
gi|338775923|gb|EGP35451.1| DNA gyrase subunit B [Brevibacillus laterosporus LMG 15441]
Length = 640
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/471 (48%), Positives = 327/471 (69%), Gaps = 6/471 (1%)
Query: 35 FWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEE 94
F PD +FT F++ + RIRELAFLN L I L ED + + +++++ GG++
Sbjct: 173 FKPDPTIFTETTVFEYELLQKRIRELAFLNKGLRITL--EDQREGQERRDDFYYEGGIKS 230
Query: 95 YVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIE 153
YV++LN +++ LHD V+ + DG+ +++A+Q+ +D+Y + +AN+I T +GGTH
Sbjct: 231 YVEFLNKNRESLHDEVIYCEGEKDGLQVEVAIQY-NDSYVSNIYSFANNINTHEGGTHEA 289
Query: 154 GVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNP 213
G KA LTR +N +K +K+KD +LSG+ VREG+T IISV++P P+FEGQTKT+LGN
Sbjct: 290 GFKAGLTRVINDYSRKFNFLKEKDQNLSGDDVREGITAIISVKIPEPQFEGQTKTKLGNS 349
Query: 214 EVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSL 273
E R + + E E++E +P V ++ KSL A +A AA++AR+L R+K+ L S+L
Sbjct: 350 EARSITESVFVERFQEFMEQNPAVAKKVVEKSLMAARAREAARKARELTRRKNALEVSAL 409
Query: 274 PGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 333
PGKLADCSS ESE+FIVEGDSAGGSAK GRDR FQAILPLRGK+LNVE+ +
Sbjct: 410 PGKLADCSSKDAAESELFIVEGDSAGGSAKMGRDRHFQAILPLRGKVLNVEKSRLDKILG 469
Query: 334 NEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD 393
N EI+ +I ALG G+ GEDF RYHKI+I+TDADVDGAHIRTLLLTFFYRY + L +
Sbjct: 470 NNEIRTIITALGTGI-GEDFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQLIE 528
Query: 394 EGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWE 453
G +Y+ PPL+ +++GK +QY ++D + ++ S +IQR+KGLGEM QLWE
Sbjct: 529 AGFVYIAQPPLFSIKQGKTIQYAFNDRQRDQILSQLKETPKPNIQRYKGLGEMNAEQLWE 588
Query: 454 TTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQN-AANLVNLD 503
TT++P R L Q+ +EDA +A++VF +LMG V+ R++ I++ + N+ NLD
Sbjct: 589 TTMDPSVRTLLQVDLEDAIDADMVFQTLMGDEVEPRRDFIESYSRNVRNLD 639
>gi|194335198|ref|YP_002016992.1| DNA gyrase subunit B [Pelodictyon phaeoclathratiforme BU-1]
gi|194307675|gb|ACF42375.1| DNA gyrase, B subunit [Pelodictyon phaeoclathratiforme BU-1]
Length = 649
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/508 (47%), Positives = 332/508 (65%), Gaps = 26/508 (5%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++ RG P V + S D +GT+ F PD +F T + + I R+RELAF
Sbjct: 153 YFQRFERGVP----QGDVKVIGSSDHRGTKTTFLPDHLIFKTT-ELRKDIIIDRMRELAF 207
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQW-----LNTDKKPLHDVVGFRKDV 116
LN +L+I ++ + + E F + GG++E+VQ+ LN K+P++ + G R
Sbjct: 208 LNKELSITVQDTEG------FQEIFHYEGGIKEFVQFTDQNRLNLLKEPIY-LYGER--- 257
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
D +++ALQ+ +D Y + + Y N+I T +GGTH+ G + +LTRTLN+ +K+ +K+
Sbjct: 258 DSTIVEIALQY-NDTYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNAYAQKNDLLKNL 316
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
+SL+G+ +EGLT +ISV+V P+FEGQTKT+LGN E + +V+ + E L+E+ E +P+
Sbjct: 317 KLSLTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVETVINEQLSEFAESNPN 376
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
VL I+ K A + AA+RA++L R+KSVL SS LPGKLADCS PE E++IVEGD
Sbjct: 377 VLKMIIEKVKGAAMSREAARRAKELTRRKSVLESSGLPGKLADCSINDPEHCELYIVEGD 436
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SAGGSAKQGRDR FQAILPL+GKILNVE+ M +NEEI+ +I ALG E+F E
Sbjct: 437 SAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILALGTSFGEEEFSVE 496
Query: 357 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 416
LRY KIII+TDADVDGAHIRTLLLTFF+RY + L + G +++ PPLY V+ GK QY
Sbjct: 497 KLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRALIEAGRVFIAQPPLYLVKSGKDQQYA 556
Query: 417 YDDAELKKVKSSF----PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
+DD E + A IQR+KGLGEM P QLW TT++P R L + +E+A
Sbjct: 557 WDDEERNSISDGMKKMQKGKANIHIQRYKGLGEMNPEQLWSTTMDPAHRSLLLVNVENAM 616
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLV 500
EA+ VFS+LMG +V+ R+E I+ A V
Sbjct: 617 EADQVFSTLMGDKVEPRREFIEKNARYV 644
>gi|145218835|ref|YP_001129544.1| DNA gyrase subunit B [Chlorobium phaeovibrioides DSM 265]
gi|145204999|gb|ABP36042.1| DNA gyrase subunit B [Chlorobium phaeovibrioides DSM 265]
Length = 642
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 233/504 (46%), Positives = 332/504 (65%), Gaps = 21/504 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG P V + + +GT+ F PD ++F +F + I R+RELAF
Sbjct: 149 WFQRYHRGVP----EGDVKEIGATSERGTKTTFMPDPEIFKVT-EFRKDIIIDRMRELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQW-----LNTDKKPLHDVVGFRKDVD 117
LN L I ++ + + E + F GGL+E+V + LN K+P++ + D
Sbjct: 204 LNSNLKIVVQDIEGEQET-----FHFEGGLKEFVLFTDANRLNLIKEPVY----IYGEKD 254
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
+++ALQ+ +D+Y + + Y N+I T +GGTH+ G + +LTRTLNS +K+ +K+
Sbjct: 255 STIVEIALQY-NDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNSYAQKNDLLKNLK 313
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
++L+G+ +EGLT +ISV+V P+FEGQTKT+LGN E + +V+ + E L+++ E +P+V
Sbjct: 314 LALTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVESVLNEQLSDFAESNPNV 373
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+ I+ K A + AA++A++L R+KSVL SS LPGKLADCS PE E++IVEGDS
Sbjct: 374 IKMIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSINDPEHCELYIVEGDS 433
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDR FQAILPL+GKILNVE+ + +NEEI+ +I ALG E+F +E
Sbjct: 434 AGGSAKQGRDRSFQAILPLKGKILNVEKARLHKLLENEEIKTIILALGTNFGEEEFSQEK 493
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRY KIII+TDADVDGAHIRTLLLTFF+R+ ++L + G +Y+ PPLY V+ GK QY +
Sbjct: 494 LRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGKVYIAQPPLYLVKAGKDQQYAW 553
Query: 418 DDAELKKVKSSF-PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
DD E + A IQR+KGLGEM P QLW TT++PE R L Q+ +E+A EA+
Sbjct: 554 DDEERNSIADMMRKGKANVHIQRYKGLGEMNPEQLWSTTMDPEHRSLLQVSVENAMEADK 613
Query: 477 VFSSLMGARVDTRKELIQNAANLV 500
VFS+LMG +V+ R+E I+ A V
Sbjct: 614 VFSTLMGDKVEPRREFIEKNARYV 637
>gi|304439074|ref|ZP_07398993.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304372433|gb|EFM26020.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 637
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 241/504 (47%), Positives = 342/504 (67%), Gaps = 12/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++SRG P T L V+ +D GT I F PD ++F T ++F+ + R RE+AF
Sbjct: 142 YRQEFSRGVPQTEL--EVVEDLKEDVTGTTIIFHPDPEIFET-VEFEFEVLEKRFREMAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I E D ++ + + GG++ +V+++N K +H DV+ F + + +
Sbjct: 199 LNKNVKIIFTDERVDRQEI----FHYEGGIKSFVEYINRKKTKIHKDVIYFEELAENTQV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+YS+ +L +AN+I T +GGTH+ G +AS+TRT+N G+K +K+K+ +LS
Sbjct: 255 EVAIQY-TDSYSENVLTFANNINTEEGGTHLSGFRASVTRTINDYGRKYNIIKEKEENLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREG+T IISV++PNP+FEGQTK++LGN E R +VD V LT YLE +P V I
Sbjct: 314 GDDVREGMTAIISVKIPNPQFEGQTKSKLGNSETRGIVDGVVSNGLTAYLEENPKVAKII 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K+L A +A AA++ARDL R++S+L S +LPGKL DC + +EIF+VEGDSAGG+
Sbjct: 374 LDKALQARRAREAARKARDLTRKRSILDSMTLPGKLKDCHESDISVNEIFLVEGDSAGGT 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRD QA+LPLRGKI+NVE+ + ++EI+ +I A G G+ E F LRY
Sbjct: 434 AKDGRDSNIQAVLPLRGKIMNVEKARLDKILNSDEIKAMITAFGTGIDKE-FDINNLRYG 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
KIII+TDADVDGAHI TLLLTFF+R+ K L + G IYV PPLY V+RG++V +YCYDD
Sbjct: 493 KIIIMTDADVDGAHIMTLLLTFFFRHMKPLIEHGHIYVAKPPLYGVKRGEKVIRYCYDDE 552
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+ + + Y I R+KGLGEM QLWETT+NP+ R+L ++ IED +A+ VFS+
Sbjct: 553 ELESALNELGRDKNYKIARYKGLGEMNAEQLWETTMNPDSRILLRVNIEDVLDADDVFST 612
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG V+ R+E I +NA N+D
Sbjct: 613 LMGVDVEPRREFIEENAKYAENID 636
>gi|443242346|ref|YP_007375571.1| DNA gyrase subunit B [Nonlabens dokdonensis DSW-6]
gi|442799745|gb|AGC75550.1| DNA gyrase subunit B [Nonlabens dokdonensis DSW-6]
Length = 645
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/508 (45%), Positives = 334/508 (65%), Gaps = 14/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RGK + V + D++GT + F PD+ +F I++++ T+A R+REL+F
Sbjct: 144 WEQEYERGKAMYP----VRAIGDTDKRGTDVTFTPDRSIFKQTIEYNYETLANRLRELSF 199
Query: 63 LNPKLTIALR-KEDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN + I L D E N E F + GL+E++++L+ + P+ DV+ + +GI
Sbjct: 200 LNKGIKIILTDARHQDEEGNNITEVFQSEEGLKEFIRFLDDTRSPIIEDVIAMEGEKNGI 259
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+ + +D+YS+ + Y N+I T +GGTH+ G + LT TL S +
Sbjct: 260 PVEVAMIY-NDSYSENLHSYVNNINTHEGGTHLAGFRRGLTSTLKKYADGSGLLDKLKFD 318
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT IISV+V P+FEGQTKT+LGN EV V Q+V + L +YLE HP+
Sbjct: 319 VSGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVTSAVSQAVSQMLEDYLEEHPNDAK 378
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A A AA++AR++V++K+V+ LPGKL+DCS T P E+F+VEGDSAG
Sbjct: 379 TIVQKVILAATARHAARKAREMVQRKTVMSGGGLPGKLSDCSETDPTLCEVFLVEGDSAG 438
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK---- 355
G+AKQGRDR FQAILPLRGKILNVE+ + +++NEEI+N+ ALG+ + E+ K
Sbjct: 439 GTAKQGRDREFQAILPLRGKILNVEKAMQHKVFENEEIRNIYTALGVTIGTEEDSKALNL 498
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
+ LRYHKI+I+ DAD+DG+HI TL+LTFF+RY K L + G IY+ PPLY V++G + +Y
Sbjct: 499 DKLRYHKIVIMCDADIDGSHIATLILTFFFRYMKELVEAGYIYIATPPLYLVKKGAKKRY 558
Query: 416 CYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ D E ++ +F A +IQR+KGLGEM QLW+TT+NPE R L+Q+ IE AEA+
Sbjct: 559 AWSDKERDEIADNFGGGA--AIQRYKGLGEMNADQLWDTTMNPEFRTLRQISIESPAEAD 616
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
VFS LMG V R+E I+ A N+D
Sbjct: 617 RVFSMLMGDEVPPRREFIEKNAIYANID 644
>gi|218131840|ref|ZP_03460644.1| hypothetical protein BACEGG_03461 [Bacteroides eggerthii DSM 20697]
gi|317474545|ref|ZP_07933819.1| DNA gyrase, subunit B [Bacteroides eggerthii 1_2_48FAA]
gi|217986143|gb|EEC52482.1| DNA gyrase, B subunit [Bacteroides eggerthii DSM 20697]
gi|316909226|gb|EFV30906.1| DNA gyrase, subunit B [Bacteroides eggerthii 1_2_48FAA]
Length = 653
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/512 (44%), Positives = 342/512 (66%), Gaps = 18/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y G P+ + V V + GTR +FWPD +FT + ++++ +A R+RELA+
Sbjct: 148 YQQEYECGHPLYS----VKEVGVTEITGTRQQFWPDDTIFTETV-YNYDILATRMRELAY 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAG--GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN + I L E Y + F GL+E+V+++++ ++ L +DV+ + G
Sbjct: 203 LNAGIKITLTDLRVKEEDGNYKQEIFYSVEGLKEFVRYIDSSREHLVNDVIYINTEKQGT 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+ + + +Y++ + Y N+I TI+GGTH+ G + +LTRTL + +K ++ +
Sbjct: 263 PVEVAIMYNT-SYNENIHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDNKMLEKAKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT +IS++V P+FEGQTKT+LGN EV VDQ+V E L+ YLE HP
Sbjct: 322 ISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEALSYYLEEHPKESK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A +A +AA++AR+ V++KS + +PGKLADCSS PEE E+F+VEGDSAG
Sbjct: 382 MIVDKVILAAQARVAARKARESVQRKSPMSGGGMPGKLADCSSKDPEECELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFKK-- 355
GSAKQGR+R FQAILPLRGKILNVE+ ++++E+ N+I+ALG+ GV GED K+
Sbjct: 442 GSAKQGRNRTFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQALGIRFGVDGEDSKEAN 501
Query: 356 -EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY K+II+TDADVDG+HI TL++T F+RY + +G +Y+ PPLY +GK +
Sbjct: 502 IDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQVIQQGYLYIATPPLYLCTKGKVKE 561
Query: 415 YCYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
YC+ D + +K ++ NA+++ QR+KGLGEM P QLWETT+NPE RMLKQ+ +E+A
Sbjct: 562 YCWTDQQRQKFIDTYGGGSENAIHT-QRYKGLGEMNPEQLWETTMNPENRMLKQVHLENA 620
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AEA+ FS LMG V R++ I+ A N+D
Sbjct: 621 AEADYTFSMLMGEDVGPRRDFIEKNATYANID 652
>gi|375086659|ref|ZP_09733061.1| DNA gyrase, B subunit [Megamonas funiformis YIT 11815]
gi|291532646|emb|CBL05759.1| DNA gyrase subunit B [Megamonas hypermegale ART12/1]
gi|374564516|gb|EHR35806.1| DNA gyrase, B subunit [Megamonas funiformis YIT 11815]
Length = 665
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 232/483 (48%), Positives = 333/483 (68%), Gaps = 8/483 (1%)
Query: 23 VDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQ 82
V D GT + F PD ++F + +D++T+ R+REL+FLN +TI L D PE+ +
Sbjct: 188 VGQTDETGTLVHFVPDAEIFDETV-YDYDTLRHRLRELSFLNRGITIILT--DERPEEVR 244
Query: 83 YNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYAN 141
++F GG+ +V+ LN +K+ ++ + V F D +++ALQ+ + +YS+ + + N
Sbjct: 245 QETFYFEGGISSFVEHLNRNKEVINPEPVYFNGTKDTTVVEIALQYNT-SYSENIYSFVN 303
Query: 142 SIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPE 201
+I T +GGTH+ G K++LTR N ++ +K+ + +L GE +REGLTC+IS+++ P+
Sbjct: 304 NINTEEGGTHLAGFKSALTRAANDFARRQGIIKNNEDNLVGEDIREGLTCVISIKLREPQ 363
Query: 202 FEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 261
FEGQTKT+LGN EVR +VD V E L+EY E +P + I+ KS+ A +A AA++AR+L
Sbjct: 364 FEGQTKTKLGNSEVRGIVDSIVSEGLSEYFEENPVISKKIIEKSIMASRAREAARKAREL 423
Query: 262 VRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKIL 321
R+K+ L SSLPGKLADCS PE++EI++VEGDSAGGSAKQGRDRRFQAILPLRGKIL
Sbjct: 424 TRRKNALEVSSLPGKLADCSVKDPEQAEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKIL 483
Query: 322 NVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLL 381
NVE+ + NEEI+ +I A G G+ G +F RY KIII+TDADVDGAHIRTLLL
Sbjct: 484 NVEKARLDKILNNEEIRTMITAFGSGI-GSEFDITKRRYGKIIIMTDADVDGAHIRTLLL 542
Query: 382 TFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFK 441
TFFYRY + L + G +Y+ PPLY++ +G+ Y Y D EL + + + ++QR+K
Sbjct: 543 TFFYRYMRPLIENGHVYIAQPPLYQIRKGRSHWYTYSDEELAQKLDEIGRDGI-TVQRYK 601
Query: 442 GLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV- 500
GLGEM P QLWETT++PE+R + Q+ + +A EA+ +F+ LMG +V+ R+ I+ ANLV
Sbjct: 602 GLGEMNPEQLWETTMDPEKRTVLQVHLREAEEADSIFTILMGDKVEPRRRFIEEHANLVR 661
Query: 501 NLD 503
NLD
Sbjct: 662 NLD 664
>gi|297588052|ref|ZP_06946696.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Finegoldia magna
ATCC 53516]
gi|297574741|gb|EFH93461.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Finegoldia magna
ATCC 53516]
Length = 638
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 242/507 (47%), Positives = 346/507 (68%), Gaps = 17/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++ +GK VT LT V GT I F PD +F T + FD N +A R RE+AF
Sbjct: 142 YEQRFEKGKTVTELTVIKENVRG---TGTTIEFMPDNTIFET-LNFDKNVLAKRFREMAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGIT 120
LN + I E+ Y E F + GG++ +V+++N KKPL H+V+ + D
Sbjct: 198 LNKGVKIEFA-----DEREGYKELFHYEGGIKSFVEYINKSKKPLDHEVMYIEGEKDTTK 252
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q+ +++Y++T++ + N+I+T+DGGTH+ G K++LTR LN + +K+KD +L
Sbjct: 253 VEIAMQY-TESYNETIVSFTNNIKTVDGGTHVVGFKSALTRALNDYARNKNILKEKDDNL 311
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ VREG+T ++SV++ NP+FEGQTK +LGN E R VVD V E+L+ Y E +P ++ +
Sbjct: 312 SGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTVVDSVVYEHLSFYFEENPKIVKT 371
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K+L++ KA LAA+RARDLVR+KSVL +++LPGKLADC S+ E +EIF+VEGDSAGG
Sbjct: 372 IIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLADCQSSDIEHNEIFLVEGDSAGG 431
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GRD +FQAILPLRGKILNVE+ + + EI+ +I A G G+ G++F LRY
Sbjct: 432 SAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSNEIKAMITAFGTGI-GKNFDISKLRY 490
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG-KQVQYCYDD 419
KI+I+TDADVDGAHIRTLLLTF YR+ K L ++G +Y+ PPLY + +G K ++YCY +
Sbjct: 491 GKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYIAQPPLYGIIKGVKVMEYCYTE 550
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI--EDAAEANVV 477
EL++ + + +QR+KGLGEM QLW+TT+NPE R+L ++ I ED E +
Sbjct: 551 KELEEALEKYGERSNIKVQRYKGLGEMNAEQLWDTTMNPEHRILIKVEIDGEDENELDNT 610
Query: 478 FSSLMGARVDTRKELI-QNAANLVNLD 503
F LMG V+ R+E I QNA N+D
Sbjct: 611 FDVLMGDNVEPRREFIEQNAVYAQNID 637
>gi|299147112|ref|ZP_07040179.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_23]
gi|298514997|gb|EFI38879.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_23]
Length = 652
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 232/511 (45%), Positives = 338/511 (66%), Gaps = 17/511 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y GKP+ + V V + D GTR +FWPD +FT + +D+ +A R+RELA+
Sbjct: 148 YQQEYEIGKPLYS----VKEVGTADITGTRQQFWPDNTIFTETV-YDYKILASRLRELAY 202
Query: 63 LNPKLTIALRKEDSDPEKNQYN--EYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I+L E + +++ GL E+V+++ + ++ L +DV+ + GI
Sbjct: 203 LNAGLRISLTDRRVVNEDGSFKGEQFYSEEGLREFVRFIESSREHLINDVIYLNSEKQGI 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I++A+ + + +S+ + Y N+I TI+GGTH+ G + +LTRTL + SK ++ +
Sbjct: 263 PIEVAIMYNT-GFSENVHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDSKMLEKVKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT +ISV+V P+FEGQTKT+LGN EV VDQ+V E L YLE HP
Sbjct: 322 ISGDDFREGLTAVISVKVQEPQFEGQTKTKLGNNEVMGAVDQAVGEVLAYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A A AA++AR++V++KS + LPGKLADCS + E+F+VEGDSAG
Sbjct: 382 TIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDATKCELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA-- 357
G+AKQGR+R FQAILPLRGKILNVE+ +++EI+N+ ALG+ + ++ KEA
Sbjct: 442 GTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYTALGVTIGTDEDSKEANI 501
Query: 358 --LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
LRYHKIII+TDADVDG+HI TL++TFF+RY + G +Y+ PPLY ++GK +Y
Sbjct: 502 QKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLYIATPPLYLCKKGKVEEY 561
Query: 416 CYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
C+ DA+ +K ++ NA+++ QR+KGLGEM QLWETT++PE RMLKQ+ I++AA
Sbjct: 562 CWTDAQRQKFIDTYGGGSENAIHT-QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAA 620
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ +FS LMG V R+E I+ A N+D
Sbjct: 621 EADYIFSMLMGEDVGPRREFIEENATYANID 651
>gi|254495273|ref|ZP_05108197.1| DNA gyrase subunit B [Polaribacter sp. MED152]
gi|85819627|gb|EAQ40784.1| DNA gyrase subunit B [Polaribacter sp. MED152]
Length = 645
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 228/511 (44%), Positives = 340/511 (66%), Gaps = 20/511 (3%)
Query: 3 YHQKYSRGK---PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRE 59
+ Q+Y RGK PV T + D GT + F PDK +FT + ++++ T+A R+RE
Sbjct: 144 WQQEYERGKTLYPVKT-------IGDTDFTGTIVTFLPDKSIFTQSTEYNYETLATRMRE 196
Query: 60 LAFLNPKLTIALR-KEDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDV 116
LA+LN +TI L K + D E N +E F + GL E++++L++ ++ L +V+ +
Sbjct: 197 LAYLNKGITITLTDKRNKDDEGNFISETFHSNKGLPEFIEYLDSTREQLIANVISMEGEK 256
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
+GI +++A+ + + +Y++ + Y N+I T +GGTH+ G + LT TL +S +K+
Sbjct: 257 NGIPVEVAMVYNT-SYAENLHSYVNNINTHEGGTHLSGFRRGLTGTLKKYADESGLLKNV 315
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
++G+ REGLT I+SV+V P+FEGQTKT+LGN EV V Q+V E LT+YLE +P+
Sbjct: 316 KFDIAGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNREVTSAVSQAVSEMLTDYLEENPN 375
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
+I+ K + A A AA++ARD+V++KSV+ LPGKL+DCS T P + EIF+VEGD
Sbjct: 376 DAKTIVQKVILAATARHAARKARDMVQRKSVMSIGGLPGKLSDCSETDPAQCEIFLVEGD 435
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGED---- 352
SAGG+AKQGRDR FQAILPLRGKILNVE+ + +++NEEI+N+ ALG+ + E+
Sbjct: 436 SAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIKNMFTALGVSIGTEEDPRA 495
Query: 353 FKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ 412
+RYHK++I+ DADVDG+HI TL+LTFF+RY K + ++G IY+ PPLY V++G++
Sbjct: 496 LNLSKIRYHKVVIMCDADVDGSHIATLILTFFFRYMKEMVEQGYIYIATPPLYLVKKGQK 555
Query: 413 VQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
QY +DD + + + +IQR+KGLGEM QLW+TT+NPE R L+++VI+
Sbjct: 556 RQYAWDDDQRDLIAQQMGGSV--TIQRYKGLGEMNAEQLWDTTMNPEFRTLRKVVIDSPT 613
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ VFS LMG V R++ I+ A N+D
Sbjct: 614 EADRVFSMLMGDEVPPRRDFIERNAKYANID 644
>gi|329954160|ref|ZP_08295255.1| DNA gyrase, B subunit [Bacteroides clarus YIT 12056]
gi|328528137|gb|EGF55117.1| DNA gyrase, B subunit [Bacteroides clarus YIT 12056]
Length = 653
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/512 (44%), Positives = 342/512 (66%), Gaps = 18/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y G P+ + V V + D GTR +FWPD +FT + ++++ +A R+RELA+
Sbjct: 148 YQQEYECGHPLYS----VKEVGTTDITGTRQQFWPDDTIFTETV-YNYDILATRMRELAY 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAG--GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN + I L E Y + F GL+E+V+++++ ++ L +DV+ + G
Sbjct: 203 LNAGIKITLTDLRVKEEDGSYKQEIFYSVEGLKEFVRYIDSSREHLVNDVIYINTEKQGT 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+ + + +Y++ + Y N+I TI+GGTH+ G + +LTRTL + +K ++ +
Sbjct: 263 PVEVAIMYNT-SYNENIHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDNKMLEKAKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT +IS++V P+FEGQTKT+LGN EV VDQ+V E L+ YLE HP
Sbjct: 322 ISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEALSYYLEEHPKESK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A +A +AA++AR+ V++KS + +PGKLADCSS PEE E+F+VEGDSAG
Sbjct: 382 MIVDKVILAAQARVAARKARESVQRKSPMSGGGMPGKLADCSSKDPEECELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFKK-- 355
GSAKQGR+R FQAILPLRGKILNVE+ ++++E+ N+I+ALG+ GV ED K+
Sbjct: 442 GSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQALGIRFGVDSEDSKEAN 501
Query: 356 -EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY K+II+TDADVDG+HI TL++T F+RY + +G +Y+ PPLY +GK +
Sbjct: 502 IDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQVIQQGYLYIATPPLYLCTKGKVKE 561
Query: 415 YCYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
YC+ D + +K ++ NA+++ QR+KGLGEM P QLWETT+NPE RMLKQ+ +E+A
Sbjct: 562 YCWTDQQRQKFIDTYGGGSENAVHT-QRYKGLGEMNPEQLWETTMNPENRMLKQVHLENA 620
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AEA+ FS LMG V R++ I+ A N+D
Sbjct: 621 AEADYTFSMLMGEDVGPRRDFIEKNATYANID 652
>gi|347541857|ref|YP_004856493.1| DNA gyrase subunit B [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346984892|dbj|BAK80567.1| DNA gyrase subunit B [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 639
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 246/508 (48%), Positives = 345/508 (67%), Gaps = 20/508 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+YSRGKP+ V V GT F PDK++FT +++D + ++ R+RELAF
Sbjct: 144 YFQEYSRGKPID----DVKKVGRTTENGTETFFIPDKEIFTETVEYDFDVLSQRLRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I+L D +N +F+ GG++E+V+ +N K+ L D V+ F + + +
Sbjct: 200 LNAGIRISLIDLRFDKSEN----FFYIGGVKEFVKHINKGKECLFDDVIYFEHSKNDLNL 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK----DKD 177
+A+Q+ +D+Y++ +L Y N+I T +GGTH+ G K SLTR +N KK +K D+
Sbjct: 256 QIAMQY-TDSYNENVLTYVNNIFTQEGGTHLIGFKTSLTRCVNDYAKKFNYIKEHNKDEI 314
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
SL GE +REGL C++SV++PNP+FEGQTKT+LGN EVR +VD +E+L +P++
Sbjct: 315 KSLIGEDIREGLVCVLSVKIPNPQFEGQTKTKLGNSEVRSIVDSIFFNCFSEFLNENPNI 374
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+ K++ A KA AAK+AR+ R KSVL +SLPGKLADCSS PEE EI+IVEGDS
Sbjct: 375 GKIVCEKAIIAAKAREAAKKARETTR-KSVLDRTSLPGKLADCSSKNPEECEIYIVEGDS 433
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDR+FQAILPL GKI+NVE++ + +E I+ +I A G G+ G++F
Sbjct: 434 AGGSAKQGRDRKFQAILPLAGKIMNVEKQRIFKILSSETIRCMITAFGCGI-GQEFDVNK 492
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
+RY++II++TDADVDG+HIRTLLLTF YRY + ++G +Y+ PPLYKV K+ YCY
Sbjct: 493 IRYNRIILMTDADVDGSHIRTLLLTFLYRYMPEVIEKGFVYIARPPLYKVTESKKEFYCY 552
Query: 418 DDAELK-KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
+ EL K+K SN + IQR+KGLGEM P QLWETT+NPE R L ++ IE A+ A+
Sbjct: 553 TEEELNLKLKEINKSNLI--IQRYKGLGEMNPSQLWETTMNPETRTLLRVTIEHASYADE 610
Query: 477 VFSSLMGARVDTRKELIQNAA-NLVNLD 503
+FS LMG +V+ R+E I+N A ++ NLD
Sbjct: 611 IFSILMGDKVEPRREFIRNNARDVKNLD 638
>gi|154503045|ref|ZP_02040105.1| hypothetical protein RUMGNA_00867 [Ruminococcus gnavus ATCC 29149]
gi|153796286|gb|EDN78706.1| DNA gyrase, B subunit [Ruminococcus gnavus ATCC 29149]
Length = 645
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 240/505 (47%), Positives = 337/505 (66%), Gaps = 11/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK T + V+ D+ GT++ F PD ++F + F+++ + R+RE+AF
Sbjct: 147 YKQRYERGK--TMYSLKVVGECDPDKTGTKVTFLPDGEIFEETV-FEYDVLKQRLREMAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L L I L +D E+ + + + + GG++E+V +LN K PL+D ++ + DG+ +
Sbjct: 204 LTKGLKIIL--QDLREEEIREHTFHYEGGIKEFVTYLNKSKTPLYDQIIYCEGEKDGVVV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q +D+YSD G+ N+I T +GGTHIEG + +LT+T N +K+K +KD + +LS
Sbjct: 262 EMAMQH-NDSYSDNTYGFVNNITTPEGGTHIEGFRKALTKTFNEYARKNKLLKDNEPNLS 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT I+SV++ P+FEGQTK +LGN E R VD V L +LE +P V
Sbjct: 321 GDDIREGLTAIVSVKIGEPQFEGQTKQKLGNSEARGAVDNIVSTQLEIFLEQNPSVAKQT 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KSL A +A AA++ARDL R+KS L SLPGKLADCS PE EI+IVEGDSAGGS
Sbjct: 381 VEKSLMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSDKNPENCEIYIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK R R QAILPLRGKILNVE+ +Y N EI+ +I A G G+ EDF LRYH
Sbjct: 441 AKTARQRATQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGIH-EDFDISKLRYH 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TLLLTF YR+ L EG +Y+ PPLYK+E+ K+V Y Y D E
Sbjct: 500 KIIIMTDADVDGAHISTLLLTFLYRFMPDLIREGYVYLAQPPLYKLEKNKKVWYAYSDEE 559
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED--AAEANVVFS 479
L ++ + ++ IQR+KGLGEM QLWETT++PE R+L ++ ++D ++E ++ F+
Sbjct: 560 LNEILTEVGRDSNNKIQRYKGLGEMDADQLWETTMDPEHRVLLRVTMDDETSSELDLTFT 619
Query: 480 SLMGARVDTRKELIQNAANLV-NLD 503
+LMG +V+ R+E I+ A V NLD
Sbjct: 620 TLMGDKVEPRREFIEENARFVKNLD 644
>gi|371910567|dbj|BAL44382.1| DNA gyrase subunit B [uncultured bacterium]
gi|374853678|dbj|BAL56580.1| DNA gyrase subunit B [uncultured Chloroflexi bacterium]
Length = 635
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/502 (47%), Positives = 338/502 (67%), Gaps = 11/502 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG PVT + V+ ++ GT+ F D ++F +++ T+A R RE+AF
Sbjct: 143 YFQRYERGYPVTPV--QVIGKVRENDTGTKTTFKFDAEIFKD-VEYRFETLAQRFREMAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
+ +TI E S+ E ++F GG+ +V++LN +++ LH VV K V+GI I+
Sbjct: 200 VTRGVTIHFVDERSNRELT----FYFEGGITSFVRYLNRNREVLHPVVYVEKQVEGIGIE 255
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
A+Q+ +DAY++++ +AN+I T+DGGTH+ G++A++TR +N +K+ +K+ D + +G
Sbjct: 256 AAIQY-TDAYTESVYSFANTINTVDGGTHLTGLRAAITRVINDYARKNGLLKENDPNFTG 314
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+ REGLT IIS++ P+P+FE QTK +L N EV+ V Q V E +L+ +P +I+
Sbjct: 315 DDTREGLTAIISIKHPDPQFESQTKVKLMNAEVQTYVQQVVGEAFATFLDENPGAARAIV 374
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K L++ +A AA++ARDLV +KS L S +LPGKLADCS P +E+FIVEGDSAGGSA
Sbjct: 375 QKCLTSARARDAARKARDLVIRKSALESLTLPGKLADCSERDPSRTELFIVEGDSAGGSA 434
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQGRDR FQAILPLRGKILN ER + N E++ +I ALG G+ G++F LRY +
Sbjct: 435 KQGRDRHFQAILPLRGKILNTERSRLDKILSNNEVKAIISALGTGI-GDNFDLSNLRYGR 493
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
+II+TDADVDG+HIRTLLLTFF+RY + L +EG +Y+ PPLY++ QV+Y Y DAE
Sbjct: 494 VIIMTDADVDGSHIRTLLLTFFFRYMQPLIEEGHLYIAQPPLYRLAWKNQVRYAYTDAEK 553
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
++ +S + +IQR+KGLGEM P QLWETT+NPE R L + IEDAAEA+ F LM
Sbjct: 554 DEILNSLNGEKV-TIQRYKGLGEMNPQQLWETTMNPETRTLLLVTIEDAAEADRTFDMLM 612
Query: 483 GARVDTRKELIQNAANLV-NLD 503
G VD R+ IQ A V NLD
Sbjct: 613 GDAVDPRRRFIQTHARAVRNLD 634
>gi|334127015|ref|ZP_08500951.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Centipeda
periodontii DSM 2778]
gi|333390317|gb|EGK61457.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Centipeda
periodontii DSM 2778]
Length = 684
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 246/499 (49%), Positives = 333/499 (66%), Gaps = 12/499 (2%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
++RG VT H + + + GTR+ F PD ++FT + T+ R+RELAFLN
Sbjct: 195 FARG--VTVEKLH--EIGTSETTGTRVHFVPDPEIFTVT-TYSFETLKHRLRELAFLNHG 249
Query: 67 LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLAL 125
+TI L D E+ + + F GG+ +V LN K+ +++ + F D +++A+
Sbjct: 250 ITITLV--DERGEEERRETFHFDGGIRSFVSHLNRKKETINEEPIYFNGVKDDTVVEIAM 307
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
Q+ +D+Y + + + N+I T +GGTH+ G K +LTR N ++ +KDKD +LSGE V
Sbjct: 308 QY-NDSYQENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARRLNVLKDKDGNLSGEDV 366
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 245
REGLTC+IS++V P+FEGQTKT+LGN EVR +VD V E LTEY E +P V +L K+
Sbjct: 367 REGLTCVISLKVREPQFEGQTKTKLGNSEVRGIVDSIVTEGLTEYFEENPTVTKKVLDKA 426
Query: 246 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 305
L A +A AA++AR+L R+K+ L SSLPGKLADCS P++ EI+IVEGDSAGGSAKQG
Sbjct: 427 LMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPDQCEIYIVEGDSAGGSAKQG 486
Query: 306 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 365
RDRRFQAILPLRGKILNVE+ ++ N EI+ +I A G G+ GE+F RY KIII
Sbjct: 487 RDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGI-GEEFDLAKRRYSKIII 545
Query: 366 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 425
+TDADVDGAHIRTLLLTFFYRY K L D G +Y+ PPLY++ + K+ Y Y D E K
Sbjct: 546 MTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVYIAQPPLYQIRKDKKHFYTYSDEEQAKK 605
Query: 426 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 485
+ + +IQR+KGLGEM P QLWETT+NPE R + Q+ EDA A+ +F+ LMG +
Sbjct: 606 LDEIGRDGV-TIQRYKGLGEMNPEQLWETTMNPEGRTMLQVGAEDAEAADELFTILMGDK 664
Query: 486 VDTRKELIQNAANLV-NLD 503
V+ R++ I+ A LV NLD
Sbjct: 665 VEPRRQFIEENARLVRNLD 683
>gi|163790923|ref|ZP_02185346.1| DNA gyrase, B subunit [Carnobacterium sp. AT7]
gi|159873765|gb|EDP67846.1| DNA gyrase, B subunit [Carnobacterium sp. AT7]
Length = 645
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 338/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ+Y++GK V + + D+ GT + F PD ++F ++F+ + +A R+RELAF
Sbjct: 150 YHQQYAQGKVVHDVEV----IGETDKHGTTVHFVPDPEIFKETVEFNFDKLATRVRELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN L I + ED +K + EY + GG++ YV++LN +K L+D + + GITI
Sbjct: 206 LNKGLKITV--EDKREDKQAFLEYHYEGGIKSYVEFLNENKVVLYDEPIFLEGEQQGITI 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q +D Y + ++ +AN+I T +GGTH G K +LTR +N KK+K +K+ + +L+
Sbjct: 264 EVAMQH-TDGYHNNLMSFANNIHTYEGGTHEFGFKTALTRVINDYAKKNKIIKENEENLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT ++S++ P+P+FEGQTKT+LGN E R + D+ + ++L +P V I
Sbjct: 323 GEDVREGLTIVLSIKHPDPQFEGQTKTKLGNSEARTITDRLFSAHFEKFLMENPPVARQI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A LAAKRAR++ R+KS L S+LPGKLADCSS P SE+FIVEGDSAGGS
Sbjct: 383 VEKGLLAARARLAAKRAREVTRKKSGLEISNLPGKLADCSSKDPSISELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RYH
Sbjct: 443 AKQGRSRLFQAILPIRGKILNVEKATLDRILANEEIRSLFTAMGTGFGG-DFDVSKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PPLY+V +GK++ Y + E
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQPPLYQVRQGKKMVYLDSEDE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + P + +IQR+KGLGEM QLWETT+NPE R + Q+ ++DA EA+ L
Sbjct: 562 LNEYLKEIPLSPKPAIQRYKGLGEMDAEQLWETTMNPENRRMLQVTVDDAIEADKSCDML 621
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG RV+ R+ I +NA + NLD
Sbjct: 622 MGDRVEPRRIFIEENARYVQNLD 644
>gi|406671602|ref|ZP_11078841.1| DNA gyrase subunit B [Facklamia hominis CCUG 36813]
gi|405580852|gb|EKB54911.1| DNA gyrase subunit B [Facklamia hominis CCUG 36813]
Length = 639
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 234/503 (46%), Positives = 330/503 (65%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y ++ RG +T + + + GTR+ F PD +FT ++ N + RIRELAF
Sbjct: 145 YRIEFERG----NITSELKVIGDHEETGTRVNFVPDPTIFTETTEYRFNILNERIRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L I L + D EK YF+ GG++ YV +LN DK+ L + + +++GIT+
Sbjct: 201 LNKNLRITLVDKREDREKEV--SYFYEGGIKSYVSYLNEDKEVLFSEPIYLEGELEGITV 258
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ + AY + +AN+I T +GGTH G K SLTR +N +++ +K+ + +L+
Sbjct: 259 EIALQYTT-AYETIINSFANNIHTHEGGTHESGFKTSLTRVINDYARRANLIKESESNLT 317
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGL I+S++ P+P+FEGQTKT+LGN EVR V D+ + +L +P + +I
Sbjct: 318 GEDTREGLVAIVSIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSSHFETFLLENPKIARTI 377
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA AAKRAR++ R+KS L ++LPGKLADCSS E+ E+FIVEGDSAGGS
Sbjct: 378 VDKGILASKARHAAKRAREITRKKSGLEIANLPGKLADCSSKDAEKCELFIVEGDSAGGS 437
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R +QAILP+RGKILNVE+ + N EI++L A+G G G DF E RYH
Sbjct: 438 AKQGRSRLYQAILPIRGKILNVEKASMDRILNNMEIRSLFTAMGTGF-GADFDVEKARYH 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLT +RY + L + G +Y+ +PPLYK++ GK+ Y D +
Sbjct: 497 KLIIMTDADVDGAHIRTLLLTLVFRYMRPLLEAGYVYIALPPLYKLKVGKKEFYLDTDEQ 556
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L + + P + +S+QR+KGLGEM QLWETT+NP R ++++ ++DA EAN V + L
Sbjct: 557 LDQWQKENP-DVRFSLQRYKGLGEMNAEQLWETTMNPANRRMQKVKMKDADEANRVMNML 615
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG V R+E I QNA + NLD
Sbjct: 616 MGEEVQPRREFIEQNAVYVRNLD 638
>gi|422325721|ref|ZP_16406749.1| DNA gyrase, B subunit [Erysipelotrichaceae bacterium 6_1_45]
gi|371667469|gb|EHO32594.1| DNA gyrase, B subunit [Erysipelotrichaceae bacterium 6_1_45]
Length = 647
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/483 (47%), Positives = 341/483 (70%), Gaps = 10/483 (2%)
Query: 23 VDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKE-DSDPEKN 81
++ ++ G+ +RF D ++F ++D +T+ RIR+LAFLN + + L E +++P++
Sbjct: 172 INDSEKHGSIVRFKADPEIFQETQEYDFDTLNARIRQLAFLNKSIRLVLCDEREAEPKRI 231
Query: 82 QYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITIDLALQWCSDAYSDTMLGYA 140
EY + GG+ +YV++LN +K PLH+ V + + + DGI ++A+Q+ +D Y ++ +
Sbjct: 232 ---EYKYDGGIRQYVEYLNKNKTPLHEEVVYVEGIEDGILAEIAMQY-NDGYIPSIYSFC 287
Query: 141 NSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP 200
N+I T++GGTH +G + +LTR +N+ ++ +K KD +L+G+ VREGLT IISV+ P+P
Sbjct: 288 NNINTMEGGTHEDGFRLALTRIINAYAREQGMIK-KDETLAGDDVREGLTAIISVKHPDP 346
Query: 201 EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARD 260
++EGQTKT+LGN EVRK+V + E L + +P+ I+ K++ A KA LAAK+AR+
Sbjct: 347 QYEGQTKTKLGNSEVRKIVSSILGEQLDRFFMENPETAKIIVDKAILASKARLAAKKARE 406
Query: 261 LVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKI 320
L R+KS L +SLPGKLADCSS E EI+IVEGDSAGGSAKQGR+ +FQAILPLRGKI
Sbjct: 407 LTRRKSALEITSLPGKLADCSSKDASECEIYIVEGDSAGGSAKQGRNSKFQAILPLRGKI 466
Query: 321 LNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLL 380
LNVE+ +++N EI+++I A G G+ GE+ LRYHKIII+TDADVDGAHI TL+
Sbjct: 467 LNVEKARLQRIFENNEIRSMITAFGCGI-GEEMDVSKLRYHKIIIMTDADVDGAHICTLM 525
Query: 381 LTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRF 440
LTFFYRY + + + G +Y+ +PPL+KV +G +V+Y Y + E++ V++S N ++QR+
Sbjct: 526 LTFFYRYLRPIIEGGYVYIAMPPLFKVAKGNRVEYVYKEEEVETVRASMGDNV--NVQRY 583
Query: 441 KGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV 500
KGLGEM P QLWETT++P R LKQ+ I+DA EA+ +F LMG V+ R++ IQ A
Sbjct: 584 KGLGEMNPEQLWETTMDPAFRTLKQVNIDDAMEADSIFEMLMGEEVEPRRDFIQENAIYA 643
Query: 501 NLD 503
LD
Sbjct: 644 TLD 646
>gi|340759260|ref|ZP_08695832.1| DNA gyrase, B subunit [Fusobacterium varium ATCC 27725]
gi|251835455|gb|EES63995.1| DNA gyrase, B subunit [Fusobacterium varium ATCC 27725]
Length = 635
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 237/504 (47%), Positives = 332/504 (65%), Gaps = 12/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY+RG P V + GT +RF D ++F T I +D+NT+ R++ELA+
Sbjct: 140 WYQKYNRGVP----EEDVKEIGVTTEHGTTVRFKADHEIFETLI-YDYNTLKNRLKELAY 194
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD-KKPLHDVVGFRKDVDGITI 121
LN L I L +P K + E+ F GG+ ++++ + + +K + + + +VD + +
Sbjct: 195 LNKGLEIHLSDSRKEPYKKE--EFKFEGGIVDFLKEITEETEKLIPEPIYMTGEVDNVAV 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D+A + + S+ + + N+I T +GGTH+ G + +LTR +N +GK +K+KD L
Sbjct: 253 DIAFLYTVNQ-SEIIYSFVNNINTHEGGTHVSGFRTALTRVINDVGKAQGYLKEKDGKLQ 311
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G +REG+T I+SV+VP P+FEGQTKT+LGN EV +V V L LE +P+ I
Sbjct: 312 GNDIREGVTAIVSVKVPQPQFEGQTKTKLGNSEVTGIVSTLVGTNLKIVLEDNPNDTKII 371
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L++ KA AA++AR+LV +KSVL SLPGKLADCSS P+E EI+IVEGDSAGGS
Sbjct: 372 IEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCSSKNPDECEIYIVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR QAILPLRGKILNVE+ +N E++ +I A G + G+ F E LRY
Sbjct: 432 AKQGRDRSHQAILPLRGKILNVEKAGLHKSLENNEVRAMITAFGTSI-GDSFNIEKLRYG 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KII++TDADVDGAHIRTLLLTF YR+ L G +Y+ PPLYK+ GKQ++Y Y D E
Sbjct: 491 KIILMTDADVDGAHIRTLLLTFIYRFMVDLIYNGNVYIAQPPLYKITTGKQIRYAYSDRE 550
Query: 422 LKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
LK++ F + Y++QR+KGLGEM P QLWETT+NP+ R L Q+ I+DA A+++F
Sbjct: 551 LKEITDVFEGDDKKYTLQRYKGLGEMNPEQLWETTMNPDTRTLLQVTIDDARAADMLFDK 610
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG +VD R+E I +NA + NLD
Sbjct: 611 LMGDKVDPRREFIEENAVYVKNLD 634
>gi|189502463|ref|YP_001958180.1| hypothetical protein Aasi_1109 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497904|gb|ACE06451.1| hypothetical protein Aasi_1109 [Candidatus Amoebophilus asiaticus
5a2]
Length = 651
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 243/515 (47%), Positives = 337/515 (65%), Gaps = 24/515 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y++G P+ V V + +GT I F PD +FTT ++++TIA R+ ELA+
Sbjct: 146 YQQEYAKGAPLYP----VKEVGTTTLRGTTIHFQPDDSIFTTTT-YNYSTIAARLGELAY 200
Query: 63 LNPKLTIALRK-EDSDPEKNQYNEYFFA-GGLEEYVQWLNTDK-----KPLHDVVGFRKD 115
LN LTI L + D E N E F + GGL E+V +L+ + +P++ + G + D
Sbjct: 201 LNAGLTIELTDLREQDQEGNFLQETFHSEGGLAEFVAYLDDAREKLIPQPIY-MEGEKYD 259
Query: 116 VDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKD 175
V + +AL + + +++ ++ Y N+I TI+GGTH+ G + +LTRTL S +KS ++
Sbjct: 260 V---PVQVALSYNT-GFTENVVSYVNNINTIEGGTHVAGFRRALTRTLKSYAEKSNLLEK 315
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
+ + G+ REGLT +ISV+V P+FEGQTKT+LGN EV VD V E L YLE HP
Sbjct: 316 AKVEIVGDDFREGLTAVISVKVSEPQFEGQTKTKLGNAEVVGAVDSCVSETLQNYLEEHP 375
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
I+SK + A +A AA++AR++V++K+VL LPGKLADCS P E+++VEG
Sbjct: 376 QEAKIIVSKVILAAQARHAARKAREMVQRKNVLTGGGLPGKLADCSDNDPAACELYLVEG 435
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK 355
DSAGG+AKQGRDRRFQAILPLRGKILNVE+ E +Y NE+++N+I ALG+ E+ K
Sbjct: 436 DSAGGTAKQGRDRRFQAILPLRGKILNVEKAQEHRIYDNEQLRNMIMALGITFGTEEDAK 495
Query: 356 ----EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK 411
E LRYHK+II+TDADVDG+HIRTL+LTFFYRY K L + G +Y+ +PPLY V+RG
Sbjct: 496 AVNLEKLRYHKVIIMTDADVDGSHIRTLILTFFYRYLKVLLERGFLYIALPPLYLVKRGS 555
Query: 412 QVQYCYDDAE-LKKVKSSFPSNALYS--IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI 468
+ +YC+ + + + VK P S IQR+KGLGEM QLW TT++P R LKQ+ I
Sbjct: 556 ESRYCWTEQDRIAAVKDFSPDGKTESVNIQRYKGLGEMNAEQLWTTTMDPAVRSLKQVTI 615
Query: 469 EDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
E AAEA+ +FS LMG V R++ IQ A +D
Sbjct: 616 ESAAEADHLFSILMGDEVAPRRDFIQLHAKYAQID 650
>gi|313900991|ref|ZP_07834481.1| DNA gyrase, B subunit [Clostridium sp. HGF2]
gi|346314835|ref|ZP_08856352.1| DNA gyrase subunit B [Erysipelotrichaceae bacterium 2_2_44A]
gi|373123464|ref|ZP_09537310.1| DNA gyrase, B subunit [Erysipelotrichaceae bacterium 21_3]
gi|312954411|gb|EFR36089.1| DNA gyrase, B subunit [Clostridium sp. HGF2]
gi|345905773|gb|EGX75510.1| DNA gyrase subunit B [Erysipelotrichaceae bacterium 2_2_44A]
gi|371660797|gb|EHO26041.1| DNA gyrase, B subunit [Erysipelotrichaceae bacterium 21_3]
Length = 647
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 231/483 (47%), Positives = 341/483 (70%), Gaps = 10/483 (2%)
Query: 23 VDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKE-DSDPEKN 81
++ ++ G+ +RF D ++F ++D +T+ RIR+LAFLN + + L E +++P++
Sbjct: 172 INDSEKHGSIVRFKADPEIFQETQEYDFDTLNARIRQLAFLNKSIRLVLCDEREAEPKRI 231
Query: 82 QYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITIDLALQWCSDAYSDTMLGYA 140
EY + GG+ +YV++LN +K PLH+ V + + + DGI ++A+Q+ +D Y ++ +
Sbjct: 232 ---EYKYDGGIRQYVEYLNKNKTPLHEEVVYVEGIEDGILAEIAMQY-NDGYIPSIYSFC 287
Query: 141 NSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP 200
N+I T++GGTH +G + +LTR +N+ ++ +K KD +L+G+ VREGLT IISV+ P+P
Sbjct: 288 NNINTMEGGTHEDGFRLALTRIINAYAREQGMIK-KDETLAGDDVREGLTAIISVKHPDP 346
Query: 201 EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARD 260
++EGQTKT+LGN EVRK+V + E L + +P+ I+ K++ A KA LAAK+AR+
Sbjct: 347 QYEGQTKTKLGNSEVRKIVSSILGEQLDRFFMENPETAKIIVDKAILASKARLAAKKARE 406
Query: 261 LVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKI 320
L R+KS L +SLPGKLADCSS E EI+IVEGDSAGGSAKQGR+ +FQAILPLRGKI
Sbjct: 407 LTRRKSALEITSLPGKLADCSSKDASECEIYIVEGDSAGGSAKQGRNSKFQAILPLRGKI 466
Query: 321 LNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLL 380
LNVE+ +++N EI+++I A G G+ GE+ LRYHKIII+TDADVDGAHI TL+
Sbjct: 467 LNVEKARLQRIFENNEIRSMITAFGCGI-GEEMDVSKLRYHKIIIMTDADVDGAHICTLM 525
Query: 381 LTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRF 440
LTFFYRY + + + G +Y+ +PPL+KV +G +V+Y Y + E++ V++S N ++QR+
Sbjct: 526 LTFFYRYLRPIIEGGYVYIAMPPLFKVAKGNRVEYVYKEEEVETVRASMGENV--NVQRY 583
Query: 441 KGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV 500
KGLGEM P QLWETT++P R LKQ+ I+DA EA+ +F LMG V+ R++ IQ A
Sbjct: 584 KGLGEMNPEQLWETTMDPAFRTLKQVNIDDAMEADSIFEMLMGEEVEPRRDFIQENAIYA 643
Query: 501 NLD 503
LD
Sbjct: 644 TLD 646
>gi|167764147|ref|ZP_02436274.1| hypothetical protein BACSTE_02530 [Bacteroides stercoris ATCC
43183]
gi|167698263|gb|EDS14842.1| DNA gyrase, B subunit [Bacteroides stercoris ATCC 43183]
Length = 653
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/512 (44%), Positives = 342/512 (66%), Gaps = 18/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y G P+ + V V + GTR +FWPD +FT + + ++ +A R+RELA+
Sbjct: 148 YQQEYECGHPLYS----VKEVGTTAITGTRQQFWPDATIFTETV-YSYDILATRMRELAY 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNE--YFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN + I L E Y + ++ GL+E+V+++++ ++ L +DV+ + G
Sbjct: 203 LNAGIKITLTDLRVKEEDGSYKQEVFYSVEGLKEFVRYIDSSREHLVNDVIYINTEKQGT 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+ + + +Y++ + Y N+I TI+GGTH+ G + +LTRTL + +K ++ +
Sbjct: 263 PVEVAIMYNT-SYNENIHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDNKMLEKAKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT +IS++V P+FEGQTKT+LGN EV VDQ+V E L+ YLE HP
Sbjct: 322 ISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEALSYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A +A +AA++AR+ V++KS + +PGKLADCSS PEE E+F+VEGDSAG
Sbjct: 382 MIVDKVILAAQARVAARKARESVQRKSPMSGGGMPGKLADCSSKDPEECELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFKK-- 355
GSAKQGR+R FQAILPLRGKILNVE+ ++++E+ N+I+ALG+ GV GED K+
Sbjct: 442 GSAKQGRNRTFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQALGIRFGVDGEDSKEAN 501
Query: 356 -EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY K+II+TDADVDG+HI TL++T F+RY + +G +Y+ PPLY +GK +
Sbjct: 502 IDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQVIQQGYLYIATPPLYLCTKGKVKE 561
Query: 415 YCYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
YC+ D + +K ++ NA+++ QR+KGLGEM P QLWETT+NPE RMLKQ+ +E+A
Sbjct: 562 YCWTDQQRQKFIDTYGGGSENAVHT-QRYKGLGEMNPEQLWETTMNPENRMLKQVHLENA 620
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AEA+ FS LMG V R++ I+ A N+D
Sbjct: 621 AEADYTFSMLMGEDVGPRRDFIEKNATYANID 652
>gi|28209863|ref|NP_780807.1| DNA gyrase subunit B [Clostridium tetani E88]
gi|28202298|gb|AAO34744.1| DNA gyrase subunit B [Clostridium tetani E88]
Length = 637
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 238/507 (46%), Positives = 349/507 (68%), Gaps = 20/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y +G VT L + + GT+ F PD +F ++F+++ + R+RE+AF
Sbjct: 144 WRQVYEKGIAVTGLE----KIGETSQHGTKTYFKPDPTIFD-ELEFEYDVLVQRLREMAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I + ED +K + ++ + GG++ +V +LN K+ LH + G + D
Sbjct: 199 LNKGINITI--EDKRVDKKE--DFHYEGGIKSFVLYLNRTKEVLHKEPIYIEGMK---DE 251
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+++++Q+ +D Y++ + +AN+I TI+GGTH+ G K+++TR N ++ +K+ D
Sbjct: 252 HMVEISIQY-NDGYAENIFSFANNISTIEGGTHLAGFKSAVTRAFNDYARRYGFLKENDK 310
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+GE +REG+T IISV++ +P+FEGQTKT+LGN EVR +VD V E + +LE +P +
Sbjct: 311 NLAGEDIREGITAIISVKLIDPQFEGQTKTKLGNSEVRGIVDTIVGEGVGNFLEENPQIA 370
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
SI+ K+L A +A AA++ARDL R+KSVL S+SLPGKLADCSS P+E EI+IVEGDSA
Sbjct: 371 KSIIDKTLMAARAREAARKARDLTRRKSVLESTSLPGKLADCSSKDPKECEIYIVEGDSA 430
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGR+RRFQAILPLRGKI+NVE++ + ++ I+++I A G G+ G+DF E +
Sbjct: 431 GGSAKQGRNRRFQAILPLRGKIMNVEKQRLDKILNSDTIKSMITAFGAGI-GKDFDVEKI 489
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RY++III+TDADVDGAHIRTLLLTFFYRY K L + G +Y+ PPLYKV + ++ Y Y
Sbjct: 490 RYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELVENGHVYIAQPPLYKVSKDRKEHYVYT 549
Query: 419 DAELKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
D EL+++ + IQR+KGLGEM QLW+TT+NP++R+L + IEDA A+ +
Sbjct: 550 DRELEEILDEIGGRDNKTQIQRYKGLGEMNAEQLWDTTMNPDKRILLRATIEDAMAADEI 609
Query: 478 FSSLMGARVDTRKELIQ-NAANLVNLD 503
F+ LMG +VD R+E IQ NA +VNLD
Sbjct: 610 FTILMGDKVDLRREFIQENAKTVVNLD 636
>gi|340347373|ref|ZP_08670482.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella dentalis
DSM 3688]
gi|433651140|ref|YP_007277519.1| DNA gyrase, B subunit [Prevotella dentalis DSM 3688]
gi|339609465|gb|EGQ14337.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella dentalis
DSM 3688]
gi|433301673|gb|AGB27489.1| DNA gyrase, B subunit [Prevotella dentalis DSM 3688]
Length = 657
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 238/517 (46%), Positives = 338/517 (65%), Gaps = 22/517 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + + DR+GTR +FWPD +FTT F + +A R+RELAF
Sbjct: 146 YQQEYEKGKPLYPVKV----IGETDRRGTRQQFWPDAGIFTTTT-FQWDIVARRMRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
LN + I L + E E F A GL+E+V++++ + L D V+ + + G+
Sbjct: 201 LNAGIRITLTDLRPNDEGKTRREVFHAKDGLKEFVRYIDRHRTHLFDDVIYLKTEKQGLP 260
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKDK 176
I++A+ + +D YS+ + Y N+I TI+GGTH+ G + +LTR L + SK ++
Sbjct: 261 IEVAIMYNTD-YSENLHSYVNNINTIEGGTHVTGFRMALTRVLKNYADNDAQISKQIEKA 319
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
I ++GE REGLT +IS++V P+FEGQTKT+LGN EV V+Q+V E LT YLE HP
Sbjct: 320 KIEVAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVSGAVNQAVGEALTNYLEEHPV 379
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
I K + A A +AA++AR+ V++KSV+ LPGKLADCS+ P++ EIF+VEGD
Sbjct: 380 EAKQICEKVILAATARVAARKARESVQRKSVMSGGGLPGKLADCSNKDPKQCEIFLVEGD 439
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFK 354
SAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV+GED +
Sbjct: 440 SAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAESVMNIIQSIGVRFGVEGEDDR 499
Query: 355 K---EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE-RG 410
+ + LRY KIII+TDADVDG+HI TL++T F+R+ + +EG +Y+ PPLYK +G
Sbjct: 500 EANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFFRFMPKVIEEGHLYIATPPLYKCTYKG 559
Query: 411 KQVQYCYDD----AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQL 466
K +YCY+D A L K QR+KGLGEM P QLWETT++P QR+LKQ+
Sbjct: 560 KVSEYCYNDQQRQAFLDKYAGGVDDGKSIHTQRYKGLGEMNPEQLWETTMDPGQRLLKQV 619
Query: 467 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
IE+AA+A+ +FS LMG V+ R+E I+ A N+D
Sbjct: 620 TIENAAQADEIFSMLMGDDVEPRREFIEENAAYANID 656
>gi|292669300|ref|ZP_06602726.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas noxia
ATCC 43541]
gi|292649141|gb|EFF67113.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas noxia
ATCC 43541]
Length = 685
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 246/503 (48%), Positives = 333/503 (66%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y ++RG VT H + + + GTR+ F PD ++FT + T+ R+RELAF
Sbjct: 192 YEISFTRG--VTVNKLHEIGI--SETTGTRVHFVPDPEIFTVT-TYSFETLKHRLRELAF 246
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN +TI L D E+ + + F GG+ +V LN K+ +++ + F D +
Sbjct: 247 LNHGITITLV--DERGEEERRETFHFEGGIRSFVSHLNRKKETINEEPIYFNGVKDDTVV 304
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+Y + + + N+I T +GGTH+ G K +LTR N ++ +KDKD +LS
Sbjct: 305 EIAMQY-NDSYQENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARRLSVLKDKDGNLS 363
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLTC+IS++V P+FEGQTKT+LGN EVR +VD V E LTEY E +P + +
Sbjct: 364 GEDVREGLTCVISLKVREPQFEGQTKTKLGNSEVRGIVDSIVTEGLTEYFEENPAITKKV 423
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K L A +A AA++AR+L R+K+ L SSLPGKLADCS P++ EI+IVEGDSAGGS
Sbjct: 424 LEKGLMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPDQCEIYIVEGDSAGGS 483
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILNVE+ ++ N EI+ +I A G G+ GE+F RY
Sbjct: 484 AKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGI-GEEFDLSKRRYS 542
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYRY K L D G +Y+ PPLY++ + K+ Y Y D E
Sbjct: 543 KIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVYIAQPPLYQIRKDKKHFYTYSDEE 602
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
K + + +IQR+KGLGEM P QLWETT+NPE R + Q+ EDA A+ +F+ L
Sbjct: 603 QAKKLDEIGRDGV-TIQRYKGLGEMNPEQLWETTMNPEGRTMLQVGAEDAEAADELFTIL 661
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R++ I+ A LV NLD
Sbjct: 662 MGDKVEPRRQFIEENARLVRNLD 684
>gi|302344968|ref|YP_003813321.1| DNA gyrase, B subunit [Prevotella melaninogenica ATCC 25845]
gi|302149978|gb|ADK96240.1| DNA gyrase, B subunit [Prevotella melaninogenica ATCC 25845]
Length = 657
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 235/517 (45%), Positives = 344/517 (66%), Gaps = 22/517 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + V D+ GTR +FWPD ++FTT + + +A R+RELA+
Sbjct: 146 YQQEYEKGKPLYPVKV----VGETDKTGTRQQFWPDPEIFTTTV-YQWAIVARRMRELAY 200
Query: 63 LNPKLTIALRKEDSDPEKNQY-NEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN + I L DPE + E F A GL+E+V++++ ++ L D V+ + + I
Sbjct: 201 LNAGIKITLSDLRPDPETGKTRTEVFHAKDGLKEFVRYVDRHRQHLFDDVIYLKTEKQNI 260
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKD 175
I++A+ + +D Y++ + Y N+I TI+GGTH++G +A+LTRTL + SK ++
Sbjct: 261 PIEVAVMYNTD-YTENIHSYVNNINTIEGGTHLQGFRAALTRTLKTYADNDPQISKQLEK 319
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
I ++GE REGLT +IS++V P+FEGQTKT+LGN EV V Q+V E LT+YLE HP
Sbjct: 320 AKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVSGAVQQAVGEALTDYLEEHP 379
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
+ I +K + A A +AA++AR+ V++K+V+ LPGKLADCS+ P++ EIF+VEG
Sbjct: 380 NEAKMICNKVILAATARVAARKARESVQRKNVMSGGGLPGKLADCSNKDPKDCEIFLVEG 439
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGE-D 352
DSAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV+GE D
Sbjct: 440 DSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEAESVMNIIQSIGVRFGVEGEGD 499
Query: 353 FKK--EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG 410
F+ + LRY KIII+TDADVDG+HI TL++T FYRY + ++G +Y+ PPLYK
Sbjct: 500 FEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMPKVIEQGHLYIATPPLYKCTYK 559
Query: 411 KQVQYCYDDAELKKVKSSFPSNA----LYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQL 466
K +YCY + + + + + A QR+KGLGEM P QLWETT++P+ R+LKQ+
Sbjct: 560 KVNEYCYTEQQRQAFIDKYANGAEDAKAIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQV 619
Query: 467 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
IE+AA+A+ +FS LMG V+ R+E I+ A N+D
Sbjct: 620 TIENAADADEIFSMLMGDDVEPRREFIEKNATYANID 656
>gi|313674412|ref|YP_004052408.1| DNA gyrase subunit b [Marivirga tractuosa DSM 4126]
gi|312941110|gb|ADR20300.1| DNA gyrase subunit B [Marivirga tractuosa DSM 4126]
Length = 653
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 235/511 (45%), Positives = 336/511 (65%), Gaps = 16/511 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+YS G P V PV D GT+I+F PD +F +F + T+A R+RELA+
Sbjct: 148 YEQEYSEGFPKEP----VKPVGETDVTGTKIQFKPDASIFMET-EFKYETVASRLRELAY 202
Query: 63 LNPKLTIALRKE-DSDPEKNQYNEYFFA-GGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN + I L+ D D + E FF+ GGL E+V++L+ ++ L + + +G+
Sbjct: 203 LNAGIKIKLQDHRDKDENGDSKEENFFSEGGLLEFVEYLDVSREKLIPQPIYMEGEKNGV 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+ +AL + + +YS+ ++ Y N+I TI+GGTH+ G + +LTRTL S KS ++ + I
Sbjct: 263 PVQVALNYNT-SYSENVVSYVNNINTIEGGTHVSGFRRALTRTLKSYADKSGLLEKQKIE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
++G+ REGLT IISV+V P+FEGQTKT+LGN +V V+ V E L +LE +P
Sbjct: 322 ITGDDFREGLTAIISVKVAEPQFEGQTKTKLGNSDVMGAVESCVSETLQYFLEENPKAAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A +A AAK+AR++V++K+V+ S LPGKLADCS P E+++VEGDSAG
Sbjct: 382 TIVQKVILAAQARNAAKKAREMVQRKNVMSGSGLPGKLADCSEKDPSICELYLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK---- 355
GSAKQGRDR FQAILPL+GKILNVE+ E +Y N+EI+N++ ALG+ ED +K
Sbjct: 442 GSAKQGRDRNFQAILPLKGKILNVEKAQEHKIYDNDEIKNILTALGVRFGTEDDEKALNL 501
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
E LRYHKI+I+TDADVDG+HIRTL+LT F+RY + L D G +Y+ PPLY ++RGK +Y
Sbjct: 502 EKLRYHKIVIMTDADVDGSHIRTLILTLFFRYMRELIDMGYVYIAQPPLYLIKRGKTERY 561
Query: 416 CY-DDAELKKVKSSFP--SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
+ +D ++ VK P + +QR+KGLGEM P QLW TT++P R +KQ+ +E AA
Sbjct: 562 VFTEDERVEVVKEISPDGTEGAVHLQRYKGLGEMNPEQLWTTTMDPHTRKMKQVSVESAA 621
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ +FS LMG V R++ I+ A +D
Sbjct: 622 EADHLFSMLMGDEVPPRRDFIEKNAKYAKID 652
>gi|22536796|ref|NP_687647.1| DNA gyrase subunit B [Streptococcus agalactiae 2603V/R]
gi|25010667|ref|NP_735062.1| DNA gyrase subunit B [Streptococcus agalactiae NEM316]
gi|161486746|ref|YP_329336.2| DNA gyrase subunit B [Streptococcus agalactiae A909]
gi|339301911|ref|ZP_08650990.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
agalactiae ATCC 13813]
gi|406709086|ref|YP_006763812.1| DNA gyrase subunit B [Streptococcus agalactiae GD201008-001]
gi|421146280|ref|ZP_15605997.1| DNA gyrase subunit B [Streptococcus agalactiae GB00112]
gi|424049842|ref|ZP_17787393.1| DNA gyrase subunit B [Streptococcus agalactiae ZQ0910]
gi|22533641|gb|AAM99519.1|AE014219_11 DNA gyrase, B subunit [Streptococcus agalactiae 2603V/R]
gi|23095021|emb|CAD46247.1| DNA gyrase, subunit B [Streptococcus agalactiae NEM316]
gi|319744658|gb|EFV97005.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
agalactiae ATCC 13813]
gi|389648685|gb|EIM70179.1| DNA gyrase subunit B [Streptococcus agalactiae ZQ0910]
gi|401687064|gb|EJS83027.1| DNA gyrase subunit B [Streptococcus agalactiae GB00112]
gi|406649971|gb|AFS45372.1| DNA gyrase subunit B [Streptococcus agalactiae GD201008-001]
Length = 650
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 230/510 (45%), Positives = 342/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L + D GT + F PD ++FT FD + +A RI+ELAF
Sbjct: 150 HYQEYQRGVVVNDLEI----IGDTDLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAF 205
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I++ ++E + EK EY + GG+ YV+++N +K+ + + + ++DGI
Sbjct: 206 LNRGLRISISDKREGQEVEK----EYHYEGGIGSYVEFINENKEVIFENPIYTDGELDGI 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +
Sbjct: 262 SVEVAMQYTT-GYQETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V
Sbjct: 321 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS E +E+FIVEGDSAG
Sbjct: 381 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF +R
Sbjct: 441 GSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKVR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY---- 415
Y K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G +++
Sbjct: 500 YQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKAYIQP 559
Query: 416 -CYDDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
+ EL++ ++ S + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAE
Sbjct: 560 GVNQEEELRQALDTYSSGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAE 619
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG RV+ R+E I+ A NLD
Sbjct: 620 ADKIFDMLMGDRVEPRREFIEANAVYSNLD 649
>gi|347521877|ref|YP_004779448.1| DNA gyrase subunit B [Lactococcus garvieae ATCC 49156]
gi|385833261|ref|YP_005871036.1| DNA gyrase subunit B [Lactococcus garvieae Lg2]
gi|343180445|dbj|BAK58784.1| DNA gyrase subunit B [Lactococcus garvieae ATCC 49156]
gi|343182414|dbj|BAK60752.1| DNA gyrase subunit B [Lactococcus garvieae Lg2]
Length = 652
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 227/508 (44%), Positives = 340/508 (66%), Gaps = 14/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L + D++GT + F PD +FT FD++ + R+RELAF
Sbjct: 151 YYQEYHRGVVVEDLAI----IGETDKRGTVVHFTPDPTIFTETQVFDYDKLVTRVRELAF 206
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + + ++N + + + GG++ YV ++N +K+ + D + + +++GIT+
Sbjct: 207 LNRGLRISI-TDKREGQENNHAMFHYEGGIQSYVSFINENKEVIFDTPIYTEGELEGITV 265
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ Y T++ +AN+I T +GGTH +G + +LTR +N+ K K +KD + +L+
Sbjct: 266 EVAMQYTG-TYHSTIMSFANNINTHEGGTHEQGFRTALTRAINNYAKAQKLLKDNEENLT 324
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT +ISV+ PNP+FEGQTKT+LGN EV +V++ E L ++ +P V I
Sbjct: 325 GDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVTGIVNKLFSEALQTFMLENPQVAKKI 384
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P+++E+FIVEGDSAGGS
Sbjct: 385 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPKQTELFIVEGDSAGGS 444
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G D+ RYH
Sbjct: 445 AKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADYDLSKARYH 503
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCY--- 417
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PP+Y ++ G + +Y
Sbjct: 504 KLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGIKVGSETKEYIQPGE 563
Query: 418 -DDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ ELK + A ++QR+KGLGEM QLWETT++P+ R++ ++ +EDAAEA+
Sbjct: 564 NQERELKLALEKWSQGRAKPTVQRYKGLGEMDDHQLWETTMDPDARLMARVSVEDAAEAD 623
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A +D
Sbjct: 624 KIFDMLMGDRVEPRREFIEANAQYSTID 651
>gi|240145738|ref|ZP_04744339.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82]
gi|257202154|gb|EEV00439.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82]
gi|291536986|emb|CBL10098.1| DNA gyrase subunit B [Roseburia intestinalis M50/1]
gi|291539810|emb|CBL12921.1| DNA gyrase subunit B [Roseburia intestinalis XB6B4]
Length = 645
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/505 (47%), Positives = 338/505 (66%), Gaps = 11/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y GKP + V+ ++ GT++ F PD ++F + +D++T+ R+RE AF
Sbjct: 147 YFQSYHIGKPDEPVK--VIGTCDSEKHGTKVTFHPDPEIFEETV-YDYDTLKQRLRETAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
L L I L D+ E + +E+ +AGG++E+V +LN K+ L+ DV+ DG+ +
Sbjct: 204 LTKGLRIVLT--DTREESHHCHEFHYAGGIKEFVTYLNRSKEALYPDVIYCEGTRDGVYV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q +D+Y+D + N+I T +GGTH+ G + +LT+T N+ + +K +KD + +L+
Sbjct: 262 EVAMQH-NDSYNDATYSFVNNIITPEGGTHLAGFRNALTKTFNTYARANKILKDSEPALT 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT IIS+++ P+FEGQTK +LGN E R VD V E LT +LE +P V SI
Sbjct: 321 GDDIREGLTAIISIKIEEPQFEGQTKQKLGNSEARGAVDSVVSEQLTYFLEQNPAVAKSI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
KSL A +A AA++ARDL R+K+ L +SLPGKLADCS P+ EIFIVEGDSAGGS
Sbjct: 381 CEKSLLAQRAREAARKARDLTRRKTALEGTSLPGKLADCSDKDPKNCEIFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK R R QAILPLRGKILNVE+ +Y N EI+ +I A G G+ EDF LRY
Sbjct: 441 AKTARSRATQAILPLRGKILNVEKARLDKIYGNAEIKAMITAFGTGIH-EDFDISKLRYD 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TL+LTF YR+ L +G +Y+ PPLYK+E+ K + Y YDDAE
Sbjct: 500 KIIIMTDADVDGAHIATLMLTFLYRFMPELIKQGHVYLATPPLYKIEKNKNIWYAYDDAE 559
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI--EDAAEANVVFS 479
L + + IQR+KGLGEM QLWETT++PE+R+LK+++I E+++E +V F+
Sbjct: 560 LNNILIEIGRDGNNKIQRYKGLGEMDAEQLWETTMDPEKRILKRVMIDEENSSEIDVTFT 619
Query: 480 SLMGARVDTRKELI-QNAANLVNLD 503
+LMG +V+ R+E I +NA + NLD
Sbjct: 620 TLMGDKVEPRREFIEENAKYVQNLD 644
>gi|336397547|ref|ZP_08578347.1| DNA gyrase subunit B [Prevotella multisaccharivorax DSM 17128]
gi|336067283|gb|EGN55917.1| DNA gyrase subunit B [Prevotella multisaccharivorax DSM 17128]
Length = 657
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/518 (45%), Positives = 344/518 (66%), Gaps = 24/518 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ V + D++GTR +FWPD +FTT F + +A R+RELA+
Sbjct: 146 YQQEYEKGKPLYP----VKMIGDTDKRGTRQQFWPDPTIFTTTT-FQWDIVARRMRELAY 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAG--GLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN + I L DPE + + F GL+E+V++++ ++ L D V+ + + G+
Sbjct: 201 LNAGIKITLTDLRPDPETGKTRQEVFHAKDGLKEFVRYIDRHRQHLFDDVIYLKTEKQGV 260
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKS----KTVKD 175
I++A+ + +D YS+ + Y N+I TI+GGTH+ G + +LTR + + K ++
Sbjct: 261 PIEVAIMYNTD-YSENLHSYVNNINTIEGGTHVTGFRMALTRVMKNYADNDPQIRKQIEK 319
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
I ++ E REGLT +IS++V P+FEGQTKT+LGN EV V+Q+V E LT YLE HP
Sbjct: 320 AKIEVASEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVSGAVNQAVGEALTNYLEEHP 379
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
D I K + A A +AA++AR+ V++KSV+ S LPGKLADCS+ P++ EIF+VEG
Sbjct: 380 DEAHKICEKVILAATARIAARKARESVQRKSVMGGSGLPGKLADCSNRDPKDCEIFLVEG 439
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDF 353
DSAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV GED
Sbjct: 440 DSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAESVMNIIQSIGVRFGVDGEDD 499
Query: 354 KK---EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE-R 409
++ + LRY KIII+TDADVDG+HI TL++T F+R+ + +EG +Y+ PPLYK +
Sbjct: 500 REANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFFRFMPKVIEEGHLYIATPPLYKCTFK 559
Query: 410 GKQVQYCYDD----AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQ 465
K QYCY+D A L K + ++++ QR+KGLGEM P QLWETT++P+ R+LKQ
Sbjct: 560 SKISQYCYNDQQRQAFLDKYGNGQEGTSIHT-QRYKGLGEMNPEQLWETTMDPKTRLLKQ 618
Query: 466 LVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
+ IE+AAEA+ +FS LMG V+ R+E I++ A N+D
Sbjct: 619 VTIENAAEADEIFSMLMGDDVEPRREFIEDNAAYANID 656
>gi|421874929|ref|ZP_16306528.1| DNA gyrase, B subunit [Brevibacillus laterosporus GI-9]
gi|372456126|emb|CCF16077.1| DNA gyrase, B subunit [Brevibacillus laterosporus GI-9]
Length = 640
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/471 (48%), Positives = 327/471 (69%), Gaps = 6/471 (1%)
Query: 35 FWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEE 94
F PD +FT +++ + RIRELAFLN L I L ED + + +++++ GG++
Sbjct: 173 FKPDPTIFTETTVYEYELLQKRIRELAFLNKGLRITL--EDQREGQERRDDFYYEGGIKS 230
Query: 95 YVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIE 153
YV++LN +++ LHD V+ + DG+ +++A+Q+ +D+Y + +AN+I T +GGTH
Sbjct: 231 YVEFLNKNRESLHDEVIYCEGEKDGLQVEVAIQY-NDSYVSNIYSFANNINTHEGGTHEA 289
Query: 154 GVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNP 213
G KA LTR +N +K +K+KD +LSG+ VREG+T IISV++P P+FEGQTKT+LGN
Sbjct: 290 GFKAGLTRVINDYSRKFNFLKEKDQNLSGDDVREGITAIISVKIPEPQFEGQTKTKLGNS 349
Query: 214 EVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSL 273
E R + + E E++E +P V ++ KSL A +A AA++AR+L R+K+ L S+L
Sbjct: 350 EARSITESVFVERFQEFMEQNPAVAKKVVEKSLMAARAREAARKARELTRRKNALEVSAL 409
Query: 274 PGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 333
PGKLADCSS ESE+FIVEGDSAGGSAK GRDR FQAILPLRGK+LNVE+ +
Sbjct: 410 PGKLADCSSKDAAESELFIVEGDSAGGSAKMGRDRHFQAILPLRGKVLNVEKSRLDKILG 469
Query: 334 NEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD 393
N EI+ +I ALG G+ GEDF RYHKI+I+TDADVDGAHIRTLLLTFFYRY + L +
Sbjct: 470 NNEIRTIITALGTGI-GEDFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQLIE 528
Query: 394 EGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWE 453
G +Y+ PPL+ +++GK +QY ++D + ++ S +IQR+KGLGEM QLWE
Sbjct: 529 AGFVYIAQPPLFSIKQGKTIQYAFNDRQRDQILSQLKETPKPNIQRYKGLGEMNAEQLWE 588
Query: 454 TTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQN-AANLVNLD 503
TT++P R L Q+ +EDA +A++VF +LMG V+ R++ I++ + N+ NLD
Sbjct: 589 TTMDPSVRTLLQVDLEDAIDADMVFQTLMGDEVEPRRDFIESYSRNVRNLD 639
>gi|239624129|ref|ZP_04667160.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520515|gb|EEQ60381.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 637
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 242/505 (47%), Positives = 338/505 (66%), Gaps = 12/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK T ++ S D+ GT++ F PDK++F I +D++T+ R+RE AF
Sbjct: 140 YQQRYERGK--VTYPLKIVGKCSPDQHGTKVTFLPDKEIFEETI-YDYDTLKIRLRETAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L L I L K+D D +K + + + GG++E+V +LN K PL+D V+ +G+ +
Sbjct: 197 LTKNLRITL-KDDRDEKKEK--TFHYEGGIKEFVTYLNKGKTPLYDQVIYCEGSKEGVYV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q +D+Y++ + + N+I T +GGTH+ G K +LT+T N +K+K +KD + SLS
Sbjct: 254 EVSMQH-NDSYTENIYTFVNNINTPEGGTHLTGFKNALTKTFNDYARKNKLLKDNEDSLS 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT IIS++V P+FEGQTK +LGN E R VD V E LT +LE +P + ++
Sbjct: 313 GEDIREGLTAIISIKVEEPQFEGQTKQKLGNSEARSAVDNIVSEQLTYFLEQNPAIAKAM 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
KS+ A +A AA++ARDL R+KS L +LPGKLADCS PE EI+IVEGDSAGGS
Sbjct: 373 CEKSIMAQRARAAARKARDLTRRKSALDGMALPGKLADCSDKNPENCEIYIVEGDSAGGS 432
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK R R QAILPLRGKILNVE+ +Y N EI+ +I A G G+ EDF LRYH
Sbjct: 433 AKTARSRATQAILPLRGKILNVEKARMDRIYGNAEIKAMITAFGTGIH-EDFDISKLRYH 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TLLLTF YR+ L +G +Y+ PPLYKVE+ K+V Y Y D E
Sbjct: 492 KIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYKVEKSKKVWYAYSDDE 551
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI--EDAAEANVVFS 479
L + + + IQR+KGLGEM QLWETT++PE+R+L ++ + E +E ++ F+
Sbjct: 552 LNSILTDIGRDTNNKIQRYKGLGEMDAEQLWETTMDPERRVLLRVTLDEETTSEIDLTFT 611
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
+LMG +V+ R+E I+ NA + NLD
Sbjct: 612 TLMGDQVEPRREFIEANAKRVQNLD 636
>gi|350565207|ref|ZP_08933993.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Peptoniphilus
indolicus ATCC 29427]
gi|348663986|gb|EGY80513.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Peptoniphilus
indolicus ATCC 29427]
Length = 640
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 237/504 (47%), Positives = 351/504 (69%), Gaps = 10/504 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q +SRG P + L ++ ++ GT+I F PD ++F T I F+ + ++ R RE+AF
Sbjct: 143 HQQTFSRGIPTSEL--EIIGKVAESDTGTKISFSPDPEIFDTLI-FEWDILSKRFREMAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I R D EK + Y + GG++ +V+++N K P+H ++V ++ D +
Sbjct: 200 LNKGVRINFR--DYREEKVREEVYHYEGGIKSFVEYINRKKTPIHKEIVYIDQEKDKTLV 257
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +DAYS+ ++ +AN+I T +GG+H+ G +++LTRT+N G+K +K+K+ +LS
Sbjct: 258 EIAIQY-TDAYSENVISFANNINTEEGGSHLSGFRSALTRTINEYGRKYNIIKEKEENLS 316
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGL+ +ISV++PNP+FEGQTK +LGN E R +VD V + LT++LE +P V I
Sbjct: 317 GDDVREGLSAVISVKLPNPQFEGQTKAKLGNSETRGIVDSVVSDVLTDFLEENPKVGKLI 376
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K+LSA +A AA+RARDL R+K++L + LPGKL+DC + E +EIF+VEG+SAGGS
Sbjct: 377 LDKALSARRAREAARRARDLSRKKNMLDAMPLPGKLSDCQLSDNENTEIFLVEGNSAGGS 436
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
A + RD FQAILPLRGKI+NVE+ M ++EI+ +I A G G+ G+DF E LRY+
Sbjct: 437 AVEARDSVFQAILPLRGKIMNVEKARLDKMLASDEIKAMITAFGTGI-GQDFNIENLRYN 495
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG-KQVQYCYDDA 420
KI+I+TDADVDGAHI TLLLTFF+RY + L ++G +YV PPL+ + +G K ++Y YD+
Sbjct: 496 KIVIMTDADVDGAHIMTLLLTFFFRYMRPLIEQGHVYVAQPPLFGILKGNKPLKYVYDEL 555
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
ELKK + Y I+R+KGLGEM LWETT++PE+R+L ++ IEDA EA+ FS
Sbjct: 556 ELKKSLEELGRDKKYDIKRYKGLGEMNAEDLWETTMDPEKRVLLKIDIEDAVEADETFSI 615
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG+ V+ R+E I +NA N+D
Sbjct: 616 LMGSDVEPRREFIEENALFAENID 639
>gi|76562223|gb|ABA44807.1| DNA gyrase, B subunit [Streptococcus agalactiae A909]
Length = 643
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 230/510 (45%), Positives = 342/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L + D GT + F PD ++FT FD + +A RI+ELAF
Sbjct: 143 HYQEYQRGVVVNDLEI----IGDTDLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAF 198
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I++ ++E + EK EY + GG+ YV+++N +K+ + + + ++DGI
Sbjct: 199 LNRGLRISISDKREGQEVEK----EYHYEGGIGSYVEFINENKEVIFENPIYTDGELDGI 254
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +
Sbjct: 255 SVEVAMQYTT-GYQETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDN 313
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V
Sbjct: 314 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAK 373
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS E +E+FIVEGDSAG
Sbjct: 374 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAG 433
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF +R
Sbjct: 434 GSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKVR 492
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY---- 415
Y K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G +++
Sbjct: 493 YQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKAYIQP 552
Query: 416 -CYDDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
+ EL++ ++ S + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAE
Sbjct: 553 GVNQEEELRQALDTYSSGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAE 612
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG RV+ R+E I+ A NLD
Sbjct: 613 ADKIFDMLMGDRVEPRREFIEANAVYSNLD 642
>gi|76798992|ref|ZP_00781191.1| DNA gyrase, B subunit [Streptococcus agalactiae 18RS21]
gi|76585663|gb|EAO62222.1| DNA gyrase, B subunit [Streptococcus agalactiae 18RS21]
Length = 599
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 230/510 (45%), Positives = 342/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L + D GT + F PD ++FT FD + +A RI+ELAF
Sbjct: 99 HYQEYQRGVVVNDLEI----IGDTDLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAF 154
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I++ ++E + EK EY + GG+ YV+++N +K+ + + + ++DGI
Sbjct: 155 LNRGLRISISDKREGQEVEK----EYHYEGGIGSYVEFINENKEVIFENPIYTDGELDGI 210
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +
Sbjct: 211 SVEVAMQYTT-GYQETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDN 269
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V
Sbjct: 270 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAK 329
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS E +E+FIVEGDSAG
Sbjct: 330 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAG 389
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF +R
Sbjct: 390 GSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKVR 448
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY---- 415
Y K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G +++
Sbjct: 449 YQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKAYIQP 508
Query: 416 -CYDDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
+ EL++ ++ S + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAE
Sbjct: 509 GVNQEEELRQALDTYSSGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAE 568
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG RV+ R+E I+ A NLD
Sbjct: 569 ADKIFDMLMGDRVEPRREFIEANAVYSNLD 598
>gi|373107166|ref|ZP_09521466.1| DNA gyrase, B subunit [Stomatobaculum longum]
gi|371652105|gb|EHO17531.1| DNA gyrase, B subunit [Stomatobaculum longum]
Length = 637
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 242/505 (47%), Positives = 341/505 (67%), Gaps = 12/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y ++++RGK TT+ HV+ S + GT + F PD ++F T + +D+ T+ R+RE AF
Sbjct: 140 YEEEFARGK--TTVPLHVVEEVSTELHGTEVHFLPDPEIFETTV-YDYETLRVRLRETAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L L I L E +D +K+ ++ F GG+ E+VQ+LN K+ L++ ++ +G+ +
Sbjct: 197 LTKNLKITLSDERNDGKKDCFH---FEGGIREFVQYLNRGKEVLYEQIIDCEDKREGVMV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q +D +++ + + N+I T +GGTH+ G K ++T+T N + K +KD + +LS
Sbjct: 254 EVAMQH-NDGFNENIFTFVNNINTPEGGTHLTGFKNAITKTFNDYARNRKLLKDNEENLS 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT I+SV+V NP+FEGQTK +LGN EV V + E LT +LE +P V I
Sbjct: 313 GEDLREGLTAIVSVKVENPQFEGQTKQKLGNSEVAGAVSSVLSEQLTYFLEQNPTVAKQI 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
K++ A +A AA++ARDL R+KS L +LPGKLADCSS PEE EIFIVEGDSAGGS
Sbjct: 373 CDKAILAQRARAAARKARDLTRRKSALDGVALPGKLADCSSKNPEECEIFIVEGDSAGGS 432
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK RDR+ QAILPLRGKILNVE+ +Y N EI+ +I A G G+ EDF LRYH
Sbjct: 433 AKTARDRKTQAILPLRGKILNVEKARMDRVYSNAEIKAMITAFGAGIH-EDFDLAKLRYH 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TL+LTF YR+ L EG +Y+ PPLYK+E+GK++ Y Y D E
Sbjct: 492 KIIIMTDADVDGAHIATLMLTFIYRFMPELIQEGYVYLAQPPLYKLEKGKRIWYAYSDEE 551
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI-EDA-AEANVVFS 479
L ++ + IQR+KGLGEM QLWETT++PE+R+L ++ + EDA +E + F+
Sbjct: 552 LNQILQEVGRDDSNKIQRYKGLGEMDAEQLWETTMDPERRVLLRVSMDEDARSELELTFT 611
Query: 480 SLMGARVDTRKELIQNAANLV-NLD 503
+LMG +V+ R+E I+N A V NLD
Sbjct: 612 TLMGDQVEPRREFIENNAKYVKNLD 636
>gi|389844097|ref|YP_006346177.1| DNA gyrase subunit B [Mesotoga prima MesG1.Ag.4.2]
gi|387858843|gb|AFK06934.1| DNA gyrase, B subunit [Mesotoga prima MesG1.Ag.4.2]
Length = 631
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 245/503 (48%), Positives = 323/503 (64%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QKY RGK + + V + GT F PD VFT FD + + R +ELA+
Sbjct: 140 YRQKYERGKALAPVEV----VGETNETGTVTSFKPDPLVFTVT-DFDFDILEARFKELAY 194
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN + I D + Y F GG+ E+V+ L +KK +H D + + + I
Sbjct: 195 LNGGIKITFE----DRRIGEKRSYHFEGGIVEFVKALTKNKKSIHKDPIYLEGTYNDVKI 250
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
LA+Q+ S +Y + +L + N+I+TI+GGTH+ G K LT+T+N +G+K +KDKD +L
Sbjct: 251 QLAMQYTS-SYDEDILTFVNNIKTIEGGTHLTGFKTVLTKTMNDVGRKHNVLKDKDPNLQ 309
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGL+ I+SV V P+FEGQTK +LGN E + V + V+E L EY + + L +I
Sbjct: 310 GEDLREGLSAILSVFVKEPQFEGQTKAKLGNDEAFEAVMKVVKEKLEEYFDYNQKDLKAI 369
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
LSK+L A +A LAAK+AR++VR+K+ L +++LPGKLADC S +E+EIFIVEGDSAGGS
Sbjct: 370 LSKALEASRARLAAKKAREMVRRKNALENTTLPGKLADCISENLDETEIFIVEGDSAGGS 429
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK R R QAILPLRGKILNVE+ M K+E I N+I ALG G+ GEDF+ + LRY
Sbjct: 430 AKMARSRETQAILPLRGKILNVEKAGLDRMLKSETISNIIVALGTGM-GEDFEIKNLRYG 488
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TLLLT FYRY L G +YV PLYK+E +Q Y Y D E
Sbjct: 489 KIIIMTDADVDGAHITTLLLTLFYRYMTPLITNGKVYVAQAPLYKIELNRQKHYFYSDEE 548
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L L + RFKGLGEM P QLWETT+NP R L ++ IEDA EA+ VF+ L
Sbjct: 549 LTTFLKEHSDRKL-NYSRFKGLGEMNPEQLWETTMNPNDRKLVKITIEDAEEADRVFTIL 607
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG+ V+ R+ IQ +A ++ NLD
Sbjct: 608 MGSEVEERRSFIQRHALSISNLD 630
>gi|110637817|ref|YP_678024.1| DNA gyrase subunit B [Cytophaga hutchinsonii ATCC 33406]
gi|110280498|gb|ABG58684.1| DNA gyrase subunit B [Cytophaga hutchinsonii ATCC 33406]
Length = 652
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 234/516 (45%), Positives = 343/516 (66%), Gaps = 26/516 (5%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y +G P V + D GT+++F PD +FT++ ++ + TIA R+REL+F
Sbjct: 147 HQQEYKKGIP----QYDVKEIGESDLHGTKVQFLPDDTIFTSS-EYKYETIANRLRELSF 201
Query: 63 LNPKLTIALRKE-DSDPEKNQYNEYFFA-GGLEEYVQWLNTDKK-----PLHDVVGFRKD 115
LN + I L+ D E E F + GGL E+V +L++ ++ PL+ D
Sbjct: 202 LNKGIRITLQDHRQVDAEGKSEIEMFHSEGGLREFVDYLDSTREKLIPTPLY----MESD 257
Query: 116 VDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKD 175
I +++A+ + + +YS+ + Y N+I TI+GGTH+ G + +LTRTL S KS ++
Sbjct: 258 KGPIPVEVAMLYNT-SYSENVFSYVNNINTIEGGTHVAGFRRALTRTLKSYADKSGMLEK 316
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
+ ++G+ REGLT +ISV+V P+FEGQTKT+LGN +V VDQ V E L YLE +P
Sbjct: 317 LKMEVTGDDFREGLTAVISVKVQEPQFEGQTKTKLGNSDVMGAVDQVVGEMLNTYLEENP 376
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
I+ K + A +A AA++AR++V++K+VL S LPGKLADCS + PE+ E+++VEG
Sbjct: 377 KEAKIIVQKVILAAQARNAARKAREMVQRKNVLSGSGLPGKLADCSESDPEKCELYLVEG 436
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK 355
DSAGGSAKQGRDR++ AILPLRGKILNVE+ E +Y+N+EI+N+I ALG+ E+ +K
Sbjct: 437 DSAGGSAKQGRDRKYHAILPLRGKILNVEKAQEHRIYENDEIKNMITALGVSFGTEEGEK 496
Query: 356 ----EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK 411
LRYHK+II+TDAD+DG+HIRTL+LTFF+RY + L D G +Y+ PPLY V+RGK
Sbjct: 497 VLNLTKLRYHKVIIMTDADIDGSHIRTLILTFFFRYMRALIDGGHVYIAQPPLYLVKRGK 556
Query: 412 QVQYCYD----DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLV 467
+ +YC+ +A +K++ +++ IQR+KGLGEM P QLW TT++PE+R LKQ+
Sbjct: 557 EEKYCWTEEQREAAVKELAKDGKEDSV-GIQRYKGLGEMNPEQLWSTTMDPEKRSLKQVS 615
Query: 468 IEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
+E AAEA+ +FS LMG V R++ I+ A +D
Sbjct: 616 VESAAEADHLFSMLMGDEVAPRRDFIEKNARYAKID 651
>gi|50364821|ref|YP_053246.1| DNA gyrase subunit B [Mesoplasma florum L1]
gi|50363377|gb|AAT75362.1| DNA gyrase subunit B [Mesoplasma florum L1]
Length = 635
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 228/503 (45%), Positives = 335/503 (66%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+HQ +S G T + + + GT +RF PD ++F +FD+ TI ++++L++
Sbjct: 141 HHQVFSGG---GTQQTEIEIIGETNETGTIVRFKPDPEIFLEGTEFDYETIRNKVKQLSY 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
LN L I L +D +++ EY F G+ +YV+ N K ++ + + D D I +
Sbjct: 198 LNKGLVIEL----NDLRIDKHVEYHFPNGILDYVKEKNETKVKINPSIFYVDDKHDDIEV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ ++ Y + ++ + N+I T +GGTH +G++ SL R +N +K T S
Sbjct: 254 EVALQYNAE-YQENLITFVNNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKYS 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
+ ++EG+ CI+S+R +P++EGQTKT+L NP+ +K VD V + E+L P+ +I
Sbjct: 313 WDDIKEGMVCIVSIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDAFEEFLLKSPEDAKAI 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+ +A KA +AA+RAR+ R+KS L + SLPGKLADC S PE +E+++VEGDSAGGS
Sbjct: 373 IDKNANAQKARIAAQRAREETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGGS 432
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+RRFQAILPLRGK+LNVER E + N EI++++ A+G G+K ED LRY
Sbjct: 433 AKTGRNRRFQAILPLRGKVLNVERVAEVRAFANNEIKSIVTAIGTGIK-EDIDLSKLRYG 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYRY K L +G +Y+ PPLYK+E GK+V Y Y D E
Sbjct: 492 KIVIMTDADVDGAHIRTLLLTFFYRYMKQLVVDGHVYIAQPPLYKIEAGKKVAYAYSDVE 551
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++K+ ++ ++IQR+KGLGEM P+QLWETT++PE+R + Q+ +EDAA AN VFS L
Sbjct: 552 LEELKAGDFKDSRFTIQRYKGLGEMDPIQLWETTMDPEKRTMLQIKLEDAAIANEVFSDL 611
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG + R+ IQ A V N+D
Sbjct: 612 MGEDPELRRNYIQENAEFVENID 634
>gi|410594221|ref|YP_006950948.1| DNA gyrase subunit B [Streptococcus agalactiae SA20-06]
gi|421531537|ref|ZP_15977919.1| DNA gyrase subunit B [Streptococcus agalactiae STIR-CD-17]
gi|403643360|gb|EJZ04142.1| DNA gyrase subunit B [Streptococcus agalactiae STIR-CD-17]
gi|410517860|gb|AFV72004.1| DNA gyrase subunit B [Streptococcus agalactiae SA20-06]
Length = 650
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 230/510 (45%), Positives = 341/510 (66%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L + D GT + F PD ++FT FD + +A RI+ELAF
Sbjct: 150 HYQEYQRGVVVNDLEI----IGDTDLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAF 205
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I++ ++E + EK EY + GG+ YV+++N +K+ + + + ++DGI
Sbjct: 206 LNRGLRISISDKREGQEVEK----EYHYEGGIGSYVEFINENKEVIFENPIYTDGELDGI 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +
Sbjct: 262 SVEVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V
Sbjct: 321 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS E +E+FIVEGDSAG
Sbjct: 381 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF R
Sbjct: 441 GSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKAR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY---- 415
Y K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G +++
Sbjct: 500 YQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKVYIQP 559
Query: 416 -CYDDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
+ EL++ ++ S + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAE
Sbjct: 560 GVNQEEELRQALDTYSSGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAE 619
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG RV+ R+E I+ A NLD
Sbjct: 620 ADKIFDMLMGDRVEPRREFIEANAVYSNLD 649
>gi|169830224|ref|YP_001716206.1| DNA gyrase subunit B [Candidatus Desulforudis audaxviator MP104C]
gi|169637068|gb|ACA58574.1| DNA gyrase, B subunit [Candidatus Desulforudis audaxviator MP104C]
Length = 635
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 248/507 (48%), Positives = 340/507 (67%), Gaps = 21/507 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++ RG L +D D GTR+ F PD +F ++F ++ +A R+REL+F
Sbjct: 143 YRQEFERGLATGELEL----LDEADETGTRVTFIPDPDIFEE-VEFQYDVVAKRLRELSF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN +T+ LR E + +K Y +AGG+ ++V+ LN K+ L D + +G+ +
Sbjct: 198 LNAGVTLVLRDERTGRDKV----YQYAGGIRDFVRHLNLHKEVLPADPIYVEDHKNGVWV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ ++ + + YAN+I T+DGGTH G K++LTRT+N +K VK+ SLS
Sbjct: 254 EVAVQYVVNSDRELIFSYANTIHTVDGGTHEAGFKSALTRTINDYARKYNLVKND--SLS 311
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT +I+V+VP P+FEGQTKT+LGN EVR +VD V + L YLE HP I
Sbjct: 312 GEDIREGLTAVINVKVPEPQFEGQTKTKLGNSEVRGLVDWVVSQRLAAYLEEHPTEARQI 371
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ +++ A +A AA+RAR+L ++KS+L S++LPGKLADCS P+ SE+++VEGDSAGGS
Sbjct: 372 VQRAVVASRAREAARRARELTKRKSLLESATLPGKLADCSRRDPQHSELYLVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILN E+ + NEEI+ LI A+G G GEDF RYH
Sbjct: 432 AKQGRDREFQAILPLRGKILNAEKARRDKLLGNEEIRALITAIGTGF-GEDFDLAKARYH 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE-RG-KQVQYCYDD 419
+I+I+TDADVDG+HIRTLLLTFFYRY K L D G +Y+ PPLY+V +G K Y Y D
Sbjct: 491 RIVIMTDADVDGSHIRTLLLTFFYRYMKPLIDAGYVYIAQPPLYRVSGKGRKNGVYLYSD 550
Query: 420 AELKKVKSSFPSNAL--YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+L++ F N +SIQR+KGLGEM P QLW+TTL+PE R + Q+ +EDA A +
Sbjct: 551 QQLEQF---FRENGRQNWSIQRYKGLGEMNPEQLWDTTLDPENRTMLQVTLEDALAAEQL 607
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
S+LMG +V+ R+E IQ A V NLD
Sbjct: 608 LSTLMGEQVEPRREFIQQHAREVRNLD 634
>gi|410666391|ref|YP_006918762.1| DNA gyrase subunit beta [Thermacetogenium phaeum DSM 12270]
gi|409104138|gb|AFV10263.1| DNA gyrase subunit beta [Thermacetogenium phaeum DSM 12270]
Length = 642
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 238/503 (47%), Positives = 344/503 (68%), Gaps = 14/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG+ + L + + GT +RF PD Q+F+ +F+ I R+R+L++
Sbjct: 151 YQQRYERGQVKSPLK----DAGAAEGTGTTVRFLPDGQIFSER-KFNREYITARVRDLSY 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L L D E++ GG+ ++V+ LN +K+ LH D + F DG+ I
Sbjct: 206 LNKGLRFVL----VDEVTGDRQEFYHEGGIADFVRSLNKNKEVLHQDPLYFSDKKDGVVI 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ + Y++ + Y N+I T +GGTH G KA+LTR +N KKS +K+ LS
Sbjct: 262 EVALQYHT-GYTEGIYSYVNNIHTQEGGTHEAGFKAALTRIINDYAKKSGYLKENMEKLS 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++SV++ P+FEGQTKT+LGN EVR +V+ V E+L E+ E +P I
Sbjct: 321 GEDTREGLTAVLSVKLKEPQFEGQTKTKLGNSEVRGIVESVVSEHLEEFFEENPGPSKLI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ A +A AA++AR+L R+K+ L SLPGKLADC+S P E E++IVEGDSAGGS
Sbjct: 381 VEKAVQAARAREAARKARELTRRKTALDHISLPGKLADCTSKDPRECELYIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKI+N E+ M NEEI+++I A+G G+ +DF + RYH
Sbjct: 441 AKQGRDRRFQAILPLRGKIINAEKARLDKMLSNEEIKSIITAVGTGIL-DDFDLKKARYH 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III++DADVDG+HIRTLLLTFFYRY + L + G +Y+ PPLYKV++GK+++Y Y D E
Sbjct: 500 RIIIMSDADVDGSHIRTLLLTFFYRYMRPLIEAGYVYIAQPPLYKVQKGKRIEYAYSDRE 559
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+K+ ++ ++ + +IQR+KGLGEM P QLWETT++PE+R + Q+ + DA A+ +F+ L
Sbjct: 560 LEKLLRNWKTDNV-TIQRYKGLGEMNPEQLWETTMDPERRTMLQVTLTDAMLADEIFTIL 618
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+E IQ +A ++ NLD
Sbjct: 619 MGEKVEPRREFIQAHARDVRNLD 641
>gi|90960995|ref|YP_534911.1| DNA gyrase subunit B [Lactobacillus salivarius UCC118]
gi|301300484|ref|ZP_07206683.1| DNA gyrase, B subunit [Lactobacillus salivarius ACS-116-V-Col5a]
gi|385839822|ref|YP_005863146.1| DNA gyrase subunit B [Lactobacillus salivarius CECT 5713]
gi|417809415|ref|ZP_12456096.1| DNA gyrase subunit B [Lactobacillus salivarius GJ-24]
gi|90820189|gb|ABD98828.1| DNA gyrase subunit B [Lactobacillus salivarius UCC118]
gi|300213943|gb|ADJ78359.1| DNA gyrase subunit B [Lactobacillus salivarius CECT 5713]
gi|300851931|gb|EFK79616.1| DNA gyrase, B subunit [Lactobacillus salivarius ACS-116-V-Col5a]
gi|335350339|gb|EGM51835.1| DNA gyrase subunit B [Lactobacillus salivarius GJ-24]
Length = 652
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 243/506 (48%), Positives = 335/506 (66%), Gaps = 9/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y + GK T++T V+ + GT + F PD +FT +D N + RIRELAF
Sbjct: 155 YGMDFKLGKVATSMT--VVGKCPRHEHGTIVHFKPDPDIFTETTTYDINVLTKRIRELAF 212
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I + +D E+ + E+ +AGG++ Y+++LN K+ + + + + +GIT+
Sbjct: 213 LNKGLKITI--DDKRQEEPTHEEFHYAGGIKHYIEFLNKGKEVIFPEPIYVEGEQNGITV 270
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D +S+ +L + N+I T +GGTH G K +LTR +N G+KS +K+ D +LS
Sbjct: 271 EVALQYTNDFHSN-LLSFTNNIHTYEGGTHESGFKTALTRVINDYGRKSGLIKENDANLS 329
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT ++S++ PNP+FEGQTKT+LGN + RKV D+ E +++ +P V I
Sbjct: 330 GEDVREGLTAVVSIKHPNPQFEGQTKTKLGNSDARKVTDKLFSETFNKFMLENPTVAKQI 389
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A KA +AAKRAR++ R+K+ L S+LPGKLAD +S PE SE+FIVEGDSAGGS
Sbjct: 390 VEKGLLAAKARIAAKRAREVTRKKNGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGS 449
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R QAILP+RGKILNVE+ + NEEI++L ALG G GE+F YH
Sbjct: 450 AKQGRSRLTQAILPIRGKILNVEKATIDRILANEEIRSLFTALGTGF-GEEFDVSKANYH 508
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLT YR+ K + D G +Y+ PPLY+V +GK ++Y D E
Sbjct: 509 KLIIMTDADVDGAHIRTLLLTLIYRFMKPMLDAGYVYIAQPPLYQVRQGKMIKYIDSDEE 568
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L V S P + IQR+KGLGEM QLWETT+NPE R L ++ + DA EAN VF L
Sbjct: 569 LNDVLGSLPPSPKPVIQRYKGLGEMDAEQLWETTMNPENRRLLRVELSDAEEANEVFEML 628
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG V R++ I++ A VN +LD+
Sbjct: 629 MGDHVGPRRQFIEDNATFVN--NLDV 652
>gi|77406144|ref|ZP_00783217.1| DNA gyrase, B subunit [Streptococcus agalactiae H36B]
gi|77408497|ref|ZP_00785234.1| DNA gyrase, B subunit [Streptococcus agalactiae COH1]
gi|77172854|gb|EAO75986.1| DNA gyrase, B subunit [Streptococcus agalactiae COH1]
gi|77175267|gb|EAO78063.1| DNA gyrase, B subunit [Streptococcus agalactiae H36B]
Length = 620
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 230/510 (45%), Positives = 342/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L + D GT + F PD ++FT FD + +A RI+ELAF
Sbjct: 120 HYQEYQRGVVVNDLEI----IGDTDLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAF 175
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I++ ++E + EK EY + GG+ YV+++N +K+ + + + ++DGI
Sbjct: 176 LNRGLRISISDKREGQEVEK----EYHYEGGIGSYVEFINENKEVIFENPIYTDGELDGI 231
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +
Sbjct: 232 SVEVAMQYTT-GYQETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDN 290
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V
Sbjct: 291 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAK 350
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS E +E+FIVEGDSAG
Sbjct: 351 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAG 410
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF +R
Sbjct: 411 GSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKVR 469
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY---- 415
Y K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G +++
Sbjct: 470 YQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKAYIQP 529
Query: 416 -CYDDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
+ EL++ ++ S + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAE
Sbjct: 530 GVNQEEELRQALDTYSSGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAE 589
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG RV+ R+E I+ A NLD
Sbjct: 590 ADKIFDMLMGDRVEPRREFIEANAVYSNLD 619
>gi|374812884|ref|ZP_09716621.1| DNA gyrase subunit B [Treponema primitia ZAS-1]
Length = 642
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 237/483 (49%), Positives = 326/483 (67%), Gaps = 10/483 (2%)
Query: 25 SKDRQGTRIRFWPDKQVF-TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQY 83
+ DR+GT +RF D +F TT FD ++ R+RELAFLN L I +R E K+
Sbjct: 165 TTDRRGTVVRFKADTSIFETTTYNFD--ALSNRLRELAFLNKGLKITIRDERLSTPKDH- 221
Query: 84 NEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANS 142
E+ F GG++ +V +LN +K L+ + + DG+ ++ A+Q+ +D Y++ M + N
Sbjct: 222 -EFKFDGGVKSFVDYLNENKNVLYREPIFIEGSRDGVEVECAIQY-NDGYNEIMFSFVND 279
Query: 143 IRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEF 202
I T +GGTH+ G K++LTRTLN KKSK K + SLSG+ VREGLT ++S +VPNP+F
Sbjct: 280 INTREGGTHLVGFKSALTRTLNEYLKKSKHAKKLEESLSGDDVREGLTAVLSTKVPNPQF 339
Query: 203 EGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLV 262
EGQTK +LGN EV+ +V+ V E L YL+ HPDV+ +IL KS+ A KA +AA++ARD
Sbjct: 340 EGQTKGKLGNSEVKGIVESLVNEQLELYLDQHPDVIGNILEKSILAAKARIAARQARDAT 399
Query: 263 RQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILN 322
R+K+ + S+ LPGKLADCS P E+FIVEGDSAGGSAK GR+R+FQAIL L GK+LN
Sbjct: 400 RRKNAMDSAGLPGKLADCSEKDPSLCELFIVEGDSAGGSAKMGRNRQFQAILSLFGKMLN 459
Query: 323 VERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLT 382
VE+ + NE++Q +I ++G G G +F +RYHKI+I+ DADVDG+HIRTLLLT
Sbjct: 460 VEKTRIEKVVTNEKLQPIIASIGAGC-GVEFDIAKIRYHKIVIMADADVDGSHIRTLLLT 518
Query: 383 FFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK-VKSSFPSNALYSIQRFK 441
FFYRY L + G +Y+ +PPLYKV K+ Y YDD E + + S +IQR+K
Sbjct: 519 FFYRYMTALIERGHVYLAMPPLYKVNYEKKTFYAYDDEEKDRLLAESGRDPEKVAIQRYK 578
Query: 442 GLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV- 500
GLGEM P QLW+TT++P QR + Q+ ++DA EA +F++LMG V R+E I+ A LV
Sbjct: 579 GLGEMNPDQLWDTTMDPAQRNIIQIHLDDAVEAERIFTTLMGEVVQPRREFIEENALLVA 638
Query: 501 NLD 503
NLD
Sbjct: 639 NLD 641
>gi|422344230|ref|ZP_16425156.1| DNA gyrase, B subunit [Selenomonas noxia F0398]
gi|355377549|gb|EHG24766.1| DNA gyrase, B subunit [Selenomonas noxia F0398]
Length = 684
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 245/503 (48%), Positives = 331/503 (65%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y ++RG V L + + + GTR+ F PD ++FT + T+ R+RELAF
Sbjct: 191 YEISFTRGVTVNKLH----EIGTSETTGTRVHFVPDPEIFTVT-TYSFETLKHRLRELAF 245
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN +TI L D E+ + + F GG+ +V LN K+ +++ + F D +
Sbjct: 246 LNHGITITLV--DERGEEERRETFHFEGGIRSFVSHLNRKKETINEEPIYFNGVKDDTVV 303
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+Y + + + N+I T +GGTH+ G K +LTR N + +KDKD +LS
Sbjct: 304 EIAMQY-NDSYQENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARCLSVLKDKDGNLS 362
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLTC+IS++V P+FEGQTKT+LGN EVR +VD V E LTEY E +P + +
Sbjct: 363 GEDVREGLTCVISLKVREPQFEGQTKTKLGNSEVRGIVDSIVTEGLTEYFEENPAITKKV 422
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K L A +A AA++AR+L R+K+ L SSLPGKLADCS P++ EI+IVEGDSAGGS
Sbjct: 423 LEKGLMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPDQCEIYIVEGDSAGGS 482
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILNVE+ ++ N EI+ +I A G G+ GE+F RY
Sbjct: 483 AKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGI-GEEFDLSKRRYS 541
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYRY K L D G +Y+ PPLY++ + K+ Y Y D E
Sbjct: 542 KIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVYIAQPPLYQIRKDKKHFYTYSDEE 601
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
K + + +IQR+KGLGEM P QLWETT+NPE R + Q+ EDA A+ +F+ L
Sbjct: 602 QAKKLDEIGRDGV-TIQRYKGLGEMNPEQLWETTMNPEGRTMLQVGAEDAEAADELFTIL 660
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R++ I+ A LV NLD
Sbjct: 661 MGDKVEPRRQFIEENARLVRNLD 683
>gi|438000917|ref|YP_007270660.1| DNA gyrase subunit B [Tepidanaerobacter acetatoxydans Re1]
gi|432177711|emb|CCP24684.1| DNA gyrase subunit B [Tepidanaerobacter acetatoxydans Re1]
Length = 640
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/504 (47%), Positives = 341/504 (67%), Gaps = 14/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RGKPVT V+ + GT+I F PD ++F + F + + R+RE AF
Sbjct: 147 FYQKYERGKPVT----DVIRKGDTEETGTKITFMPDNEIFEDTV-FSQDILTQRLREQAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L D N + + GG+ +V++LN + LH+ + D + +
Sbjct: 202 LNRGIRIEL----FDERTGNSNVFHYEGGIVSFVKYLNRKRDVLHEKPIYMSAARDDMEV 257
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+Y +T+L +AN+I T +GGTH+ G + +LTR++N +K +K++D +LS
Sbjct: 258 EVAMQY-NDSYLETVLTFANNINTHEGGTHLSGFRTALTRSMNDYMRKMNLLKEQDANLS 316
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV++ NP+FEGQTKT+LGN E+R +VD V E ++ +LE +P + I
Sbjct: 317 GEDVREGLTAVISVKLTNPQFEGQTKTKLGNSEIRSLVDTVVGEGISRFLEENPAIARVI 376
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AA++AR+L R+K+ L ++LPGKLADC P E+++VEGDSAGGS
Sbjct: 377 VEKALGAARAREAARKARELTRRKTALEHTTLPGKLADCRERDPRLCELYLVEGDSAGGS 436
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRD + QAILPLRGKILNVE+ + NEEI+++I ALG G+ GE+F E LRYH
Sbjct: 437 AKQGRDPQIQAILPLRGKILNVEKARMDKILNNEEIRSMITALGTGI-GEEFDIEKLRYH 495
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KII++ DADVDGAHIRTLLLTFFYRY + L + G IY+ PPLY+V GK+ Y +DD E
Sbjct: 496 KIILMADADVDGAHIRTLLLTFFYRYMQPLIEAGKIYIAQPPLYRVVLGKKDYYAFDDLE 555
Query: 422 LKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L K+ S S I+RFKGLGEM QLWETT+NPE R + ++ +EDA A+ +F+
Sbjct: 556 LSKILESLGNSRERAEIKRFKGLGEMAAEQLWETTMNPETRTILKVSLEDAVAADEIFTI 615
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R++ I ++AA + NLD
Sbjct: 616 LMGDKVEPRRQFIFEHAAEVQNLD 639
>gi|420144430|ref|ZP_14651918.1| DNA gyrase subunit B [Lactococcus garvieae IPLA 31405]
gi|391855882|gb|EIT66431.1| DNA gyrase subunit B [Lactococcus garvieae IPLA 31405]
Length = 652
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 227/508 (44%), Positives = 340/508 (66%), Gaps = 14/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V L + D++GT + F PD +FT FD++ + R+RELAF
Sbjct: 151 YYQEYHRGVVVEDLAI----IGETDKRGTVVHFTPDPTIFTETQIFDYDKLVTRVRELAF 206
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + + ++N + + + GG++ YV ++N +K+ + D + + +++GIT+
Sbjct: 207 LNRGLRISI-TDKREGQENNHAMFHYEGGIQSYVSFINENKEVIFDTPIYTEGELEGITV 265
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ Y T++ +AN+I T +GGTH +G + +LTR +N+ K K +KD + +L+
Sbjct: 266 EVAMQYTG-TYHSTIMSFANNINTHEGGTHEQGFRTALTRAINNYAKAQKLLKDNEENLT 324
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT +ISV+ PNP+FEGQTKT+LGN EV +V++ E L ++ +P V I
Sbjct: 325 GDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVTGIVNKLFSEALQTFMLENPQVAKKI 384
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P+++E+FIVEGDSAGGS
Sbjct: 385 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPKQTELFIVEGDSAGGS 444
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G D+ RYH
Sbjct: 445 AKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADYDLSKARYH 503
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCY--- 417
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PP+Y ++ G + +Y
Sbjct: 504 KLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGIKVGSETKEYIQPGE 563
Query: 418 -DDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ ELK + A ++QR+KGLGEM QLWETT++P+ R++ ++ +EDAAEA+
Sbjct: 564 NQERELKLALEKWSQGRAKPTVQRYKGLGEMDDHQLWETTMDPDARLMARVSVEDAAEAD 623
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A +D
Sbjct: 624 KIFDMLMGDRVEPRREFIEANAQYSTID 651
>gi|406968684|gb|EKD93488.1| hypothetical protein ACD_28C00141G0005 [uncultured bacterium]
Length = 639
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 245/504 (48%), Positives = 338/504 (67%), Gaps = 14/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQ-GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
Y Q+Y G P + + VD K GT IRFWPDK +F +F+ TI R+R+ A
Sbjct: 146 YVQEYQYGAP-----QYEIKVDGKSTSTGTLIRFWPDKGIFEIT-EFNPQTILNRLRQQA 199
Query: 62 FLNPKLTIALRKEDSD-PEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
+L +TI R E + P + Q+ +F GG++ YV LN K+ + +VV K+V
Sbjct: 200 YLTKGITIRFRDERVESPSRYQF---YFEGGIKSYVLHLNKSKEVIGEVVYLDKEVPEGM 256
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
I++A Q+ + ++ + + +AN+I T +GG H+ G +++LTR +N+ +K+ +K+K+ +L
Sbjct: 257 IEIAFQY-NQSFQECIFTFANTIHTPEGGMHLTGFRSALTRVINAYARKNNLLKEKEDNL 315
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
E VREGLT +ISV++P+P+FEGQTK++LGNPE+R V+ E+L EYLE +P+
Sbjct: 316 MAEDVREGLTVVISVKLPDPQFEGQTKSKLGNPEIRTAVETVFGEFLQEYLEENPNHGKE 375
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I++K A +A LAA+ ARD V +K L +LPGKLADCSS P SE++IVEGDSAGG
Sbjct: 376 IIAKCSLAARARLAARAARDTVIRKGALEGMTLPGKLADCSSKDPSNSELYIVEGDSAGG 435
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGR+R QAILPLRGKILNVE + N EI+ LI ALG+G+ GE F LRY
Sbjct: 436 SAKQGRNRENQAILPLRGKILNVEHARMDRILGNNEIKALIIALGVGI-GEFFDLGRLRY 494
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
+I+I+TDADVDGAHIRTLLLT FYRY KTL +EG +Y+ PPLYK+ +GK+++YCY D
Sbjct: 495 DRIVIMTDADVDGAHIRTLLLTLFYRYFKTLIEEGHLYIAQPPLYKLSQGKRLEYCYTDE 554
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+ + +F +IQR+KGLGEM P QLWETT+NPE RM+ ++ I+DA A+ VF +
Sbjct: 555 QKEVQMKTFSDTMKINIQRYKGLGEMNPEQLWETTMNPETRMMLRVSIDDAERADKVFDT 614
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG+ V RK+ IQ A V NLD
Sbjct: 615 LMGSEVLPRKKFIQAHAKQVRNLD 638
>gi|373498797|ref|ZP_09589298.1| DNA gyrase, B subunit [Fusobacterium sp. 12_1B]
gi|404367389|ref|ZP_10972756.1| DNA gyrase, B subunit [Fusobacterium ulcerans ATCC 49185]
gi|313690309|gb|EFS27144.1| DNA gyrase, B subunit [Fusobacterium ulcerans ATCC 49185]
gi|371960408|gb|EHO78066.1| DNA gyrase, B subunit [Fusobacterium sp. 12_1B]
Length = 635
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/504 (46%), Positives = 334/504 (66%), Gaps = 12/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY+RG P + + D GT +RF D ++F T I +D+NT+ R++ELA+
Sbjct: 140 WYQKYNRGIPEEDVKEIGVTTD----HGTSVRFKADHEIFETLI-YDYNTLKNRLKELAY 194
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD-KKPLHDVVGFRKDVDGITI 121
LN L I L +P K + E+ F GG+ ++++ + + +K + + + +VD +T+
Sbjct: 195 LNKGLEIHLSDSRKEPYKKE--EFKFEGGIVDFLKEITEETEKLIPEPIYMSGEVDNVTV 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D+A + + ++ + + N+I T +GGTH+ G + +LTR +N +GK +K+KD L
Sbjct: 253 DIAFLYTVNQ-AEVIYSFVNNINTHEGGTHVSGFRTALTRVINDVGKAQGYLKEKDGKLQ 311
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G +REG+T I+SV+VP P+FEGQTKT+LGN EV +V V L LE +P+ I
Sbjct: 312 GNDIREGVTAIVSVKVPQPQFEGQTKTKLGNSEVTGIVSTLVGTNLKIVLEDNPNDTKII 371
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L++ KA AA++AR+LV +KSVL SLPGKLADCSS P+E EI+IVEGDSAGGS
Sbjct: 372 IEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCSSKNPDECEIYIVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR QAILPLRGKILNVE+ +N E++ +I A G + G+ F E LRY
Sbjct: 432 AKQGRDRSHQAILPLRGKILNVEKAGLHKSLENNEVRAMITAFGTSI-GDSFNIEKLRYG 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KII++TDADVDGAHIRTLLLTF YR+ L G +Y+ PPLYK+ GKQ++Y Y D E
Sbjct: 491 KIILMTDADVDGAHIRTLLLTFIYRFMVDLIYNGNVYIAQPPLYKITTGKQIRYAYTDKE 550
Query: 422 LKKVKSSFPSNAL-YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
LK++ F + Y++QR+KGLGEM P QLW+TT+NP+ R L Q+ I+DA A+++F
Sbjct: 551 LKEITDVFEGDDRKYTLQRYKGLGEMNPEQLWDTTMNPDTRTLLQVTIDDARAADMLFDK 610
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG +VD R+E I +NA + NLD
Sbjct: 611 LMGDKVDPRREFIEENAVYVKNLD 634
>gi|298207945|ref|YP_003716124.1| DNA gyrase subunit B [Croceibacter atlanticus HTCC2559]
gi|83850586|gb|EAP88454.1| DNA gyrase subunit B [Croceibacter atlanticus HTCC2559]
Length = 645
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/508 (44%), Positives = 338/508 (66%), Gaps = 14/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RGKP+ V V D GT + F PD Q+F I++++ T+A R+RELAF
Sbjct: 144 WEQEYERGKPLYP----VKAVGDTDFSGTVVTFHPDNQIFQQTIEYNYETLASRMRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQY-NEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN LTI L + +K ++ +E FF+ GL E+V++L+ ++ P+ DV+ + +G+
Sbjct: 200 LNKGLTITLTDKRQTDDKGEFISERFFSEEGLSEFVRFLDGNRDPIIKDVISMEGEKNGV 259
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+ + S +Y++ + Y N+I T +GGTH+ G + LT +L S +
Sbjct: 260 PVEVAMIYNS-SYAENLHSYVNNINTHEGGTHLAGFRRGLTSSLKKFADASGMLDKLKFD 318
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
++G+ REGLT IISV+V P+FEGQTKT+LGN EV V Q+V E + ++E +P+
Sbjct: 319 IAGDDFREGLTAIISVKVSEPQFEGQTKTKLGNREVTSAVSQAVSEMIEIHMEENPNDAK 378
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A +A AAK+AR++V++K+V+ LPGKL+DCS+ P E E+F+VEGDSAG
Sbjct: 379 TIIEKVILAAQARHAAKKAREMVQRKTVMSIGGLPGKLSDCSNQDPAECEVFLVEGDSAG 438
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK---- 355
G+AKQGRDR FQAILPLRGKILNVE+ +++NEEI+N+ ALG+ + E+ K
Sbjct: 439 GTAKQGRDRAFQAILPLRGKILNVEKAMSHKVFENEEIKNIFTALGVTIGTEEDSKALNL 498
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
LRYHKI+I+ DADVDG+HI TL+LTFF+RY K L + G IY+ PPLY +++G++ +Y
Sbjct: 499 SKLRYHKIVIMCDADVDGSHIATLILTFFFRYMKELIEAGHIYIATPPLYLIKKGQKKRY 558
Query: 416 CYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+++ E + + + F + S+QR+KGLGEM QLW+TT+NPE R L+Q+ I++ EA+
Sbjct: 559 AWNEDEREAIANEFKGSV--SVQRYKGLGEMNAEQLWDTTMNPEFRTLRQVAIDNGVEAD 616
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+FS LMG V R+E I+ A N+D
Sbjct: 617 RIFSMLMGDDVPPRREFIEKNAKYANID 644
>gi|431792075|ref|YP_007218980.1| DNA gyrase subunit B [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430782301|gb|AGA67584.1| DNA gyrase subunit B [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 644
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 235/503 (46%), Positives = 340/503 (67%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ++ RGK + LT ++ + GT+I F PD ++F I F + +A R+REL+F
Sbjct: 151 YHQEFMRGKTTSELT--IIGEADSGKTGTKISFAPDPEIFEE-IVFQFDILAHRLRELSF 207
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN K+ I L E D ++ Y+ GG+ ++V+++N K+ LH + + F + DG+ +
Sbjct: 208 LNKKVAITLIDEREDKKE----LYYHTGGIFDFVKYINRSKEVLHPEPIYFEAEKDGVQV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ +Q+ +D Y + + YAN+I T +GGTH G KA+LTR +N +K+K +K+ D +L+
Sbjct: 264 EICMQY-NDGYIENLFSYANNIHTQEGGTHESGFKAALTRVVNDYSRKNKILKENDANLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT +ISV+VP P+FEGQTKT+LGN E+R +VD E L+ +L +P +
Sbjct: 323 GEDIREGLTVVISVKVPEPQFEGQTKTKLGNSEIRSIVDSITGEGLSVFLAENPATGKKV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KSL A +A AA++AR+L R+KS L S+LPGKLADCS E E++IVEGDSAGGS
Sbjct: 383 IEKSLQASRAREAARKARELTRRKSALEVSALPGKLADCSWKEAELCEMYIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDRRFQAILP+RGKILNVE+ + N EI+ ++ A+G G+ EDF RYH
Sbjct: 443 AKSGRDRRFQAILPIRGKILNVEKARLDRILGNAEIRAMVTAMGTGIS-EDFDITKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIR LLLTFF+R+ K L + IY+ PPL+K+++GK V Y Y D E
Sbjct: 502 KLVIMTDADVDGAHIRILLLTFFFRFMKPLIENNYIYIAQPPLFKIKKGKDVYYAYSDEE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K++ + + IQR+KGLGEM QLW+TT++P +R + Q+ ++DA A+ +F+ L
Sbjct: 562 LAKIQDKIGRDKV-EIQRYKGLGEMNADQLWDTTMDPAKRTILQVTMDDAIRADELFTIL 620
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG V+ R+E I +NA + NLD
Sbjct: 621 MGDMVEPRREFIHENAKYVRNLD 643
>gi|298372284|ref|ZP_06982274.1| DNA gyrase, B subunit [Bacteroidetes oral taxon 274 str. F0058]
gi|298275188|gb|EFI16739.1| DNA gyrase, B subunit [Bacteroidetes oral taxon 274 str. F0058]
Length = 653
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 230/510 (45%), Positives = 334/510 (65%), Gaps = 15/510 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+YSRG P+ V V + GT I F PDK +F I + ++ + R+RELAF
Sbjct: 149 YVQEYSRGVPLG----EVKEVGTSSETGTTITFHPDKDIFID-IHYKYSILVKRMRELAF 203
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN +LTI + + + N+ E++ GL E+V+++++ ++PL +DV+ D G
Sbjct: 204 LNAGIRLTITDLRSEEEGGANKTEEFYSEQGLREFVKYIDSTREPLINDVIYIDTDKYGT 263
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+ + + +Y++ + Y N+I TI+GGTH+ G + +LTRTL +K ++ +
Sbjct: 264 PVEVAMMYNT-SYTENLHSYVNNINTIEGGTHVTGFRTALTRTLKKYADDNKLLEKTKVE 322
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+S + REG+T +ISV+V P+FEGQTKT+LGN EV+ +VD++V E L +LE HP
Sbjct: 323 ISSDDFREGITAVISVKVAEPQFEGQTKTKLGNDEVKGMVDRAVGEALNVFLEEHPKEAK 382
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A A AA++AR+LV++KS L LPGKLADCSS EIF+VEGDSAG
Sbjct: 383 TIVEKIILAATARNAARKARELVQRKSPLSGGGLPGKLADCSSRDASLCEIFLVEGDSAG 442
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGED----FKK 355
GSAKQGRDR FQAILPLRGKILNVE+ +++EE++N+ ALG+ + E+
Sbjct: 443 GSAKQGRDRNFQAILPLRGKILNVEKAMRHKAFESEEVRNIYTALGVTIGTEEDSQALNI 502
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
E LRYHK++I+TDADVDG+HI TL+LTFF+RY K L ++G +Y+ PPLY ++GK +Y
Sbjct: 503 EKLRYHKVVIMTDADVDGSHIATLILTFFFRYMKELIEQGHVYIATPPLYLCKKGKVQEY 562
Query: 416 CYDDAELKKVKSSFPSNALYSI--QRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
C+ + + + + I QR+KGLGEM P QLWETT+NPE R L+Q+ IE+AAE
Sbjct: 563 CWTEEQRLRFIQQYGDGKESGITQQRYKGLGEMNPEQLWETTMNPENRTLRQITIENAAE 622
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ VFS LMG V R++ I+ A N+D
Sbjct: 623 ADYVFSMLMGDDVAPRRQFIEENATYANID 652
>gi|282848760|ref|ZP_06258155.1| DNA gyrase, B subunit [Veillonella parvula ATCC 17745]
gi|282581546|gb|EFB86934.1| DNA gyrase, B subunit [Veillonella parvula ATCC 17745]
Length = 633
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 238/499 (47%), Positives = 336/499 (67%), Gaps = 12/499 (2%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
++RG T + + + GT + F PD ++F T + F +T+ R++ELAFLN
Sbjct: 144 FARGHK----TSELHEIGKAEGTGTTVIFKPDAEIFETTV-FSFDTLKMRLQELAFLNKG 198
Query: 67 LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLAL 125
L I L D E+ + + + GGL ++ +LN +K+ ++ V+ D + +D+AL
Sbjct: 199 LRITL--SDLRLEEPRVESFHYEGGLVSFITFLNENKEAINPTVINIENTKDDVVVDVAL 256
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
Q+ +D+YS+ +L + N+I TIDGGTH+ G +A+LTRTLN G+KS +K+ + +LSGE V
Sbjct: 257 QY-NDSYSENLLSFVNNINTIDGGTHLSGFRAALTRTLNDYGRKSGLIKENESNLSGEDV 315
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 245
REGLT ++SV+V P+FEGQTKT+LGN EV+ + D V E L + E HP I+ K+
Sbjct: 316 REGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVTEGLKTFFEEHPQDAKKIIEKA 375
Query: 246 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 305
A +A AA++ARDL R+K+ L SSLPGKLADCS +EI++VEGDSAGGSAKQG
Sbjct: 376 TMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSMTEIYLVEGDSAGGSAKQG 435
Query: 306 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 365
RDRR+QAILPLRGKILNVE+ + N EI+++I A G G+ G++F RY+KIII
Sbjct: 436 RDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTGI-GDEFDITKSRYNKIII 494
Query: 366 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 425
+TDADVDGAHIRTLLLTFFYRY + L ++G +Y+ PPLY++++GK Y Y DAEL
Sbjct: 495 MTDADVDGAHIRTLLLTFFYRYMRQLIEDGHVYIAQPPLYQIKKGKSHWYVYSDAELTAK 554
Query: 426 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 485
+ +IQR+KGLGEM P QLWETT+NPE R + Q+ ++ A EA+ +F+ LMG +
Sbjct: 555 LDEVGRDGT-TIQRYKGLGEMNPEQLWETTMNPENRTILQVSLDGAIEADKIFTVLMGDK 613
Query: 486 VDTRKELIQNAANLV-NLD 503
V+ R++ I++ A V NLD
Sbjct: 614 VEPRRKFIEDNAKYVRNLD 632
>gi|373460688|ref|ZP_09552439.1| DNA gyrase, B subunit [Prevotella maculosa OT 289]
gi|371955306|gb|EHO73110.1| DNA gyrase, B subunit [Prevotella maculosa OT 289]
Length = 656
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/517 (45%), Positives = 340/517 (65%), Gaps = 23/517 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + + D++GTR +FWPD +FTT F + +A R+RELA+
Sbjct: 146 YQQEYEKGKPLYPVKV----IGETDKRGTRQQFWPDPAIFTTTT-FKWDIVASRMRELAY 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
LN + I L + E E F A GL+E+V++++ + L D V+ + + GI
Sbjct: 201 LNAGIRITLTDLRPNEEGKTRQEVFHAKDGLKEFVRYVDRHRTHLFDDVIYLKTEKQGIP 260
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKDK 176
I++A+ + +D YS+ + Y N+I TI+GGTH+ G +A+LTRTL + +K ++
Sbjct: 261 IEVAIMYNTD-YSENIHSYVNNINTIEGGTHLTGFRAALTRTLKTYADAEPTIAKQIEKA 319
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
I ++GE REGLT +IS++V P+FEGQTKT+LGN EV V Q+V E L+ YLE HP
Sbjct: 320 KIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVSGAVQQAVGEALSNYLEEHPI 379
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
I K + A A +AA++AR+ V++KSV+ LPGKLADCS+ P+E EIF+VEGD
Sbjct: 380 EAKKICEKVVLAATARIAARKARESVQRKSVMSGGGLPGKLADCSNKDPKECEIFLVEGD 439
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFK 354
SAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV+GED +
Sbjct: 440 SAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAESVMNIIQSIGVRFGVEGEDDR 499
Query: 355 K---EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK 411
+ + LRY KIII+TDADVDG+HI TL++T FYR+ + ++G +Y+ PPLYK K
Sbjct: 500 EANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPKVIEDGHLYIATPPLYKCSYKK 559
Query: 412 QVQYCYDDAEL-----KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQL 466
+YCY + + K V+ AL++ QR+KGLGEM P QLWETT++P R+LKQ+
Sbjct: 560 VSEYCYTEQQRQAFIDKYVEGKEDDKALHT-QRYKGLGEMNPEQLWETTMDPSSRLLKQV 618
Query: 467 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
I++AAEA+ +FS LMG V+ R+E I+ A N+D
Sbjct: 619 TIQNAAEADEIFSMLMGDDVEPRREFIEQNATYANID 655
>gi|366051966|ref|ZP_09449688.1| DNA gyrase subunit B [Lactobacillus suebicus KCTC 3549]
Length = 647
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/507 (47%), Positives = 330/507 (65%), Gaps = 14/507 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY+ ++RG T + V+ + + GT + F PD +F ++D + RIREL+
Sbjct: 149 EYYMDFTRGHVKTPMK--VIGDRPEGQHGTIVHFKPDPDIFRETTEYDIKVLTTRIRELS 206
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVD 117
FLN L I + ED PE + E+ + GG+ YV++LN +K L D V G K
Sbjct: 207 FLNKGLRITI--EDRRPETPTHEEFHYEGGIRHYVEYLNQNKDVLFDEPVYVEGQEK--- 261
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
GIT++++LQ+ D +S+ +L + N+I T +GGTH G K +LTR +N +K+ +K +
Sbjct: 262 GITVEVSLQYTDDFHSN-LLTFTNNIHTYEGGTHETGFKTALTRVINDYARKNGQIKANE 320
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+LSG+ VREG+T ++S++ P+P+FEGQTKT+LGN + R V D E ++ +PDV
Sbjct: 321 DALSGDDVREGMTAVVSIKHPDPQFEGQTKTKLGNSDARTVTDHLFSETFGRFMMENPDV 380
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K L A KA +AAKRAR++ R+KS L S+LPGKLAD +S P SE+FIVEGDS
Sbjct: 381 ARKIVDKGLLASKARIAAKRAREVTRKKSGLDISNLPGKLADNTSKDPAISELFIVEGDS 440
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGR R QAILP+RGKILNVE+ + NEEI++L ALG G G DF
Sbjct: 441 AGGSAKQGRSRLTQAILPIRGKILNVEKASIDKILANEEIRSLFTALGTGF-GNDFDVSK 499
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
YHK+II+TDADVDGAHIRTLLLT FYR+ + + + G +Y+ PPLY+V +GK V+Y
Sbjct: 500 ANYHKLIIMTDADVDGAHIRTLLLTLFYRFMRPMIESGYVYIAQPPLYQVRQGKYVRYID 559
Query: 418 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
D EL +V SS + +IQR+KGLGEM QLWETT++PE+R L ++ ++DA EA+ V
Sbjct: 560 SDEELDEVLSSLQPSPKPAIQRYKGLGEMDAEQLWETTMDPEKRRLLRVNLDDAIEADQV 619
Query: 478 FSSLMGARVDTRKELIQNAANLV-NLD 503
FS LMG +V R+ I+ A V NLD
Sbjct: 620 FSMLMGDKVMPRRNFIEENATFVENLD 646
>gi|448339329|ref|ZP_21528357.1| DNA gyrase subunit B [Natrinema pallidum DSM 3751]
gi|445620558|gb|ELY74054.1| DNA gyrase subunit B [Natrinema pallidum DSM 3751]
Length = 642
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/498 (45%), Positives = 335/498 (67%), Gaps = 7/498 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ + G+PV + V ++ + GT IRFWPD +F T + +T++ R+RELAF
Sbjct: 141 FRHAFEAGEPVGDME-RVRDMEPDEETGTEIRFWPDTDIFETG-EISFSTLSNRLRELAF 198
Query: 63 LNPKLTIALR--KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN + I LR +E++D ++ Y + GG+ E+V +LN + +HD ++ F + I
Sbjct: 199 LNSGVRITLRDEREETDEGESVAETYEYDGGIREFVDYLNETRSAMHDDIIYFEDEAQNI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+Q ++ ++ +AN+I T +GGTH+ G K +LTR +N ++ + D D +
Sbjct: 259 QVEVAMQ-ATEELQGSIHAFANNINTREGGTHLTGFKTALTRCVNDYANENDLLSDLDNN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L GE +REGLT +IS++ P+P+FEGQTKT+LGN EVR +V+ ++ E L Y E HPD +
Sbjct: 318 LKGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIVESAMHEGLGTYFEEHPDTAE 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I++K++ A KA +AA++A +L R+KS L S+SLPGKLADC + P+E+E+FI EGDSAG
Sbjct: 378 AIVAKAVEAAKARMAAQKAEELTRRKSALESTSLPGKLADCQTKDPDEAELFIAEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQ R+ FQAILP++GKILNVE+ + +N+EI+N+I A+G G+ G++F + +R
Sbjct: 438 GSAKQARNPDFQAILPIKGKILNVEKHRLDRILENDEIRNMITAIGAGI-GDEFDIDDVR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
Y KII+ TDADVDGAHIRTLLLTFFYR+ + L + G +Y PPLY++ + +
Sbjct: 497 YKKIIMATDADVDGAHIRTLLLTFFYRHMRPLLEGGYVYATQPPLYRIRYRGETYDAMTE 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
AE ++ +QRFKGLGEM P QLWETT+NPE R+LKQ+ IEDAA A+ +FS
Sbjct: 557 AERDRIVEEKCDGTPSQVQRFKGLGEMNPEQLWETTMNPENRILKQITIEDAAAADKMFS 616
Query: 480 SLMGARVDTRKELIQNAA 497
LMG V+ RK+ I++ A
Sbjct: 617 VLMGDAVEPRKQFIKDHA 634
>gi|336393327|ref|ZP_08574726.1| DNA gyrase, B subunit [Lactobacillus coryniformis subsp. torquens
KCTC 3535]
Length = 637
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 235/503 (46%), Positives = 328/503 (65%), Gaps = 8/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ + RGK T L + + GT +RFWPD +F +D + RIRELAF
Sbjct: 140 YYMDFKRGKVATQLKE--IGTAPEHEHGTIVRFWPDPDIFQETTVYDIKILTTRIRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVD-GITI 121
LN L I + ED E+ E+ + GG++ YV++L+ K+ L + + V+ GIT+
Sbjct: 198 LNKGLRITI--EDLRGEEPSKQEFHYEGGIKSYVEFLDNGKQDLFPEPIYVEGVEKGITV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ D Y ++ + N+I T +GGTH G K +LTR +N K+ +K+ + +LS
Sbjct: 256 EVALQYTED-YHTNLMTFTNNIHTYEGGTHEAGFKTALTRVINDYAHKNGLMKENEGNLS 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG+T ++S++ P+P+FEGQTKT+LGN + R V D + E + YL +P + +
Sbjct: 315 GEDVREGMTAVVSIKHPDPQFEGQTKTKLGNSDARTVTDHTFAETFSRYLMENPKIAKQV 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A KA LAAKRAR++ R+KS L S+LPGKLAD SS PE SE+FIVEGDSAGGS
Sbjct: 375 VDKGLLASKARLAAKRAREVTRKKSGLEISNLPGKLADNSSKDPEISELFIVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R QAILP+RGKILNVE+ + NEEI+ L A+G G G++F RYH
Sbjct: 435 AKQGRSRLTQAILPIRGKILNVEKASIDRILANEEIRTLFTAMGTGF-GDEFDLAKARYH 493
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLT FYR+ + + + G +Y+ PPLY+V +GK +Y D E
Sbjct: 494 KLIIMTDADVDGAHIRTLLLTLFYRFMRPVVEAGYVYIAQPPLYQVRQGKMQRYIDSDEE 553
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ + + IQR+KGLGEM QLWETT++P+ R L ++ + DA EA+ VFS L
Sbjct: 554 LEQILGTLQPSPKPVIQRYKGLGEMDASQLWETTMDPDYRRLLRVDVTDAKEADEVFSML 613
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +VD R++ I+ A+ V NLD
Sbjct: 614 MGDKVDPRRKFIEENAHYVENLD 636
>gi|167043616|gb|ABZ08310.1| putative DNA gyrase B, partial [uncultured marine microorganism
HF4000_APKG2M17]
Length = 655
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/506 (46%), Positives = 340/506 (67%), Gaps = 10/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q + G PV + V + + GT +RFWPD +F T +F + +A R+RE+A+
Sbjct: 154 WKQTFEYGDPVGAV-AKVRDMKDGESTGTLVRFWPDGGIFQTT-EFRFDRLADRLREMAY 211
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDG-ITI 121
LN + I++ ED + +EY F GG+ E+V++L+ + P+HD + D D + +
Sbjct: 212 LNRHVYISI--EDLREAEGLRDEYHFEGGIIEFVEYLDEARTPIHDETIYIADEDAEVPV 269
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+++ S Y++ +L + N+I T +GGTH+ G + +LTRTL S K+ +K+ + LS
Sbjct: 270 EMAMRYNS-GYTENVLSFVNNINTHEGGTHVSGFRRALTRTLKSYADKNNLLKNVKVDLS 328
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ REG+T I+S++V P+FEGQTKT+LGN EV+ V+ V L E+L+ HP I
Sbjct: 329 GDDFREGITVILSIKVAEPQFEGQTKTKLGNSEVQGAVESLVFLKLGEWLDDHPKESKRI 388
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A AA++AR+LV++K+ S LPGKLADCSS EE EI++VEGDSAGGS
Sbjct: 389 VEKVIIAAEARAAARKARELVQRKNAFSSGGLPGKLADCSSKNAEECEIYLVEGDSAGGS 448
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL--GLGVKGEDFKKEALR 359
AKQ RDR FQAILPLRGKILNVE+ + NEEI+N++ AL GLG +DF E LR
Sbjct: 449 AKQARDRHFQAILPLRGKILNVEKARLDRILANEEIRNIVTALGTGLGAGEDDFDPEKLR 508
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHKII++TDADVDGAHIRTLLLTF YR+ L + G IY+ PPLYK ++GKQ +YC+ D
Sbjct: 509 YHKIIVMTDADVDGAHIRTLLLTFLYRHMHALVEAGYIYIAQPPLYKAKKGKQEEYCWTD 568
Query: 420 AELKKVKSSFPSNA--LYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
+LK+V ++ +IQR+KGLGEM P QLW+TT+NPE R+L+++ I+DAA A+ +
Sbjct: 569 KQLKEVIERIGGDSPEKVTIQRYKGLGEMNPDQLWDTTMNPETRLLQRITIDDAAAADRI 628
Query: 478 FSSLMGARVDTRKELIQNAANLVNLD 503
FS+LMG V+ R++ I+ A +D
Sbjct: 629 FSTLMGDAVEPRRKFIERNAKYATID 654
>gi|227485761|ref|ZP_03916077.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
51172]
gi|227236316|gb|EEI86331.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
51172]
Length = 642
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/502 (47%), Positives = 340/502 (67%), Gaps = 18/502 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y +++RG+ +T + + GT+I F PD ++F T I F+ + + R RE+AF
Sbjct: 150 YKMEFARGE----VTKDIEVIGDTTETGTKITFKPDGEIFDTTI-FERSILENRFREMAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVV-GFRKDVDGITI 121
LN + I D +N + F GG+ E+V +LN +K P+ +++ F +GI +
Sbjct: 205 LNKGVEIRFE----DERENFETSFKFEGGISEFVSFLNRNKDPIMEMIPHFDGSQEGIEV 260
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+ A Q+ +D YS+ +L YAN+I+T +GGTH+ G+++SLTR++N +K +KD + +L
Sbjct: 261 EFAFQY-TDGYSENILSYANNIQTPEGGTHLSGLRSSLTRSVNDYARKYNFIKDNEENLQ 319
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REG+T IISV++ +P+FEGQTK++LGN EVR VVD V E+LT +LE +P SI
Sbjct: 320 GEDIREGITAIISVKISDPQFEGQTKSKLGNSEVRGVVDSYVSEHLTAFLEENPKPAKSI 379
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L++ +A AA++ARDL R++S+L S++LPGKLADC ST E+EIFIVEG+SAGGS
Sbjct: 380 IDKALASRRAREAARKARDLTRKRSILDSATLPGKLADCQSTDISENEIFIVEGNSAGGS 439
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRD R QAILPLRGKI+NVE+ + +EEI+N+I A G G+ G++F LRY
Sbjct: 440 AKGGRDNRIQAILPLRGKIMNVEKAHLDKVLNSEEIKNMITAFGTGI-GKEFDISKLRYG 498
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYRY K L DEG +YV +PPLY++ +GK+ +Y Y D E
Sbjct: 499 KIIIMTDADVDGAHIRTLLLTFFYRYMKDLIDEGHVYVALPPLYRISQGKKERYVYSDDE 558
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV---VF 478
K +A + I R+KGLGEM QLWETT++P++R+L L +E+ E+ F
Sbjct: 559 KDKYIKEL-GDATFKINRYKGLGEMNAEQLWETTMDPDRRVL--LRVEEDLESTTTDDTF 615
Query: 479 SSLMGARVDTRKELIQNAANLV 500
S LMG +V+ R+ IQ A V
Sbjct: 616 SLLMGEKVEPRRNFIQENAKYV 637
>gi|332798030|ref|YP_004459529.1| DNA gyrase subunit B [Tepidanaerobacter acetatoxydans Re1]
gi|332695765|gb|AEE90222.1| DNA gyrase, B subunit [Tepidanaerobacter acetatoxydans Re1]
Length = 635
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/504 (47%), Positives = 341/504 (67%), Gaps = 14/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RGKPVT V+ + GT+I F PD ++F + F + + R+RE AF
Sbjct: 142 FYQKYERGKPVT----DVIRKGDTEETGTKITFMPDNEIFEDTV-FSQDILTQRLREQAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L D N + + GG+ +V++LN + LH+ + D + +
Sbjct: 197 LNRGIRIEL----FDERTGNSNVFHYEGGIVSFVKYLNRKRDVLHEKPIYMSAARDDMEV 252
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+Y +T+L +AN+I T +GGTH+ G + +LTR++N +K +K++D +LS
Sbjct: 253 EVAMQY-NDSYLETVLTFANNINTHEGGTHLSGFRTALTRSMNDYMRKMNLLKEQDANLS 311
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV++ NP+FEGQTKT+LGN E+R +VD V E ++ +LE +P + I
Sbjct: 312 GEDVREGLTAVISVKLTNPQFEGQTKTKLGNSEIRSLVDTVVGEGISRFLEENPAIARVI 371
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+L A +A AA++AR+L R+K+ L ++LPGKLADC P E+++VEGDSAGGS
Sbjct: 372 VEKALGAARAREAARKARELTRRKTALEHTTLPGKLADCRERDPRLCELYLVEGDSAGGS 431
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRD + QAILPLRGKILNVE+ + NEEI+++I ALG G+ GE+F E LRYH
Sbjct: 432 AKQGRDPQIQAILPLRGKILNVEKARMDKILNNEEIRSMITALGTGI-GEEFDIEKLRYH 490
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KII++ DADVDGAHIRTLLLTFFYRY + L + G IY+ PPLY+V GK+ Y +DD E
Sbjct: 491 KIILMADADVDGAHIRTLLLTFFYRYMQPLIEAGKIYIAQPPLYRVVLGKKDYYAFDDLE 550
Query: 422 LKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
L K+ S S I+RFKGLGEM QLWETT+NPE R + ++ +EDA A+ +F+
Sbjct: 551 LSKILESLGNSRERAEIKRFKGLGEMAAEQLWETTMNPETRTILKVSLEDAVAADEIFTI 610
Query: 481 LMGARVDTRKELI-QNAANLVNLD 503
LMG +V+ R++ I ++AA + NLD
Sbjct: 611 LMGDKVEPRRQFIFEHAAEVQNLD 634
>gi|336171503|ref|YP_004578641.1| DNA gyrase subunit B [Lacinutrix sp. 5H-3-7-4]
gi|334726075|gb|AEH00213.1| DNA gyrase, B subunit [Lacinutrix sp. 5H-3-7-4]
Length = 649
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/508 (43%), Positives = 337/508 (66%), Gaps = 14/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RGK + V + D++GT + F PD +FT ++++++T+A R+RELA+
Sbjct: 148 WEQEYERGKSLYP----VKAIGDTDKRGTIVTFKPDPTIFTQTLEYNYDTLASRMRELAY 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAG--GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN +T+ L + S E Y F GL+E++++L+ ++PL DV+ F + +G+
Sbjct: 204 LNKGITVHLIDKRSKKEDGSYEGETFHSEEGLKEFIKFLDATREPLMKDVISFEGEKNGV 263
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+ + + +Y++ + Y N+I T +GGTH+ G + LT TL +S +
Sbjct: 264 PVEVAMVYNT-SYAENLHSYVNNINTHEGGTHLSGFRRGLTHTLKKYADESGMLDKLKFD 322
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
++G+ REGLT I+SV+V P+FEGQTKT+LGN EV V QSV E L++YLE +P+
Sbjct: 323 IAGDDFREGLTAIVSVKVQEPQFEGQTKTKLGNREVSAAVSQSVSEMLSDYLEENPEDAK 382
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A +A AA++AR++V++K+V+ LPGKL+DCS P + E+++VEGDSAG
Sbjct: 383 TIVQKVILAAQARHAAQKAREMVQRKTVMSIGGLPGKLSDCSEQDPAKCEVYLVEGDSAG 442
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK---- 355
G+AKQGRDR FQAILPLRGKILNVE+ +++NEEI+N+ ALG+ + E+ K
Sbjct: 443 GTAKQGRDRAFQAILPLRGKILNVEKAMTHKVFENEEIKNIFTALGVTIGTEEDSKALNL 502
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
LRYHKI+I+ DAD+DG+HI TL+LTFF+RY K L + G IY+ PPLY +++G + QY
Sbjct: 503 SKLRYHKIVIMCDADIDGSHIETLILTFFFRYMKELIENGHIYIATPPLYLIKKGAKKQY 562
Query: 416 CYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
++D E K + F ++ IQR+KGLGEM QLW+TT+NPE R L+Q+ I++ EA+
Sbjct: 563 AWNDEERKAIMQEFGESS--KIQRYKGLGEMNAEQLWDTTMNPEFRTLRQIHIDNGVEAD 620
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
VFS LMG V R+E I+ A N+D
Sbjct: 621 RVFSMLMGDEVPPRREFIEKNAIYANID 648
>gi|357060838|ref|ZP_09121602.1| B subunit [Alloprevotella rava F0323]
gi|355375671|gb|EHG22954.1| B subunit [Alloprevotella rava F0323]
Length = 653
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 237/513 (46%), Positives = 337/513 (65%), Gaps = 18/513 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ ++ V + +GTR +FWPD VF+T +++ T++ R+RELA+
Sbjct: 146 YQQEYEKGKPLYSVKV----VGETELRGTRQQFWPDDTVFSTTT-YNYETLSNRMRELAY 200
Query: 63 LNPKLTIALRKEDSDPEKN-QYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
LN L I L D E N + E+F GL ++V++L++ + L D V+ + +G+
Sbjct: 201 LNAGLKITLTDLRQDDEGNIRQQEFFSEQGLPQFVRYLDSSRSHLFDDVIHISTNKNGLP 260
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKS--KTVKDKDI 178
ID+A+ + + Y++ + Y N+I TI+GGTH+ G + +LTR L + +++ K ++ I
Sbjct: 261 IDVAVMY-NTGYAENIHSYVNNINTIEGGTHLTGFRQALTRVLKNYAEQTAAKQIEKAKI 319
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+SGE REGLT +ISV+V P+FEGQTKTRLGN EV V+Q+V E T YLE HP
Sbjct: 320 EISGEDFREGLTAVISVKVAEPQFEGQTKTRLGNSEVTGAVNQAVGEAFTNYLEEHPKEA 379
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K + A A +AA++AR+ V++KS L LPGKLADCSS E E+F+VEGDSA
Sbjct: 380 KLIVDKVILAATARIAARKARESVQRKSPLTGGGLPGKLADCSSKDAAECELFLVEGDSA 439
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGE--DFK 354
GGSAKQGR RR QAILPLRGKILNVE+ ++++E+ N+I+A+G+ G+ GE +
Sbjct: 440 GGSAKQGRSRRTQAILPLRGKILNVEKAMWHKAFESDEVNNIIQAMGVRFGLDGESKEAN 499
Query: 355 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLY--KVERGKQ 412
E LRYHKIII+ DADVDG HI TL++T FYRY L ++G +Y+ +PPLY K ++G
Sbjct: 500 IEKLRYHKIIIMADADVDGQHIATLIMTLFYRYMPQLIEDGYLYIAMPPLYRCKSKKGNH 559
Query: 413 VQYCYDD-AELKKVKS-SFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED 470
YCY++ A L+ +K S QR+KGLGEM P QLWETT+NPE R+LKQ+ +E+
Sbjct: 560 EDYCYNEQARLQFIKDYGDGSEENIVTQRYKGLGEMNPSQLWETTMNPETRLLKQVTLEN 619
Query: 471 AAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ A+ FS LMG V R+E I+ A N+D
Sbjct: 620 ASNADFTFSMLMGEDVGPRREFIERNATYANID 652
>gi|392389999|ref|YP_006426602.1| DNA gyrase subunit B [Ornithobacterium rhinotracheale DSM 15997]
gi|390521077|gb|AFL96808.1| DNA gyrase, B subunit [Ornithobacterium rhinotracheale DSM 15997]
Length = 649
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 240/512 (46%), Positives = 346/512 (67%), Gaps = 17/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y+RGK + V + DR GT + F PD +F ++ T+A R+REL+F
Sbjct: 143 YQQEYARGKAL----GDVQEIGETDRTGTTVTFSPDDSIFNHT-EYSFETLAARLRELSF 197
Query: 63 LNPKLTIALRKEDSDPEKNQY-NEYFFA-GGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN ++I L E E Y +E F + GGL+E+V++++ +++PL V+ ++D I
Sbjct: 198 LNKGISITLTDERVKDENGNYLSEVFHSEGGLKEFVEFIDENREPLMQKVIFMEGEIDDI 257
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-I 178
+++A+++ + ++++ + Y N+I T +GGTH+ G + +LTRTL + + K+KD I
Sbjct: 258 PVEVAMRYNT-SFNENLHSYVNNINTHEGGTHLTGFRRALTRTLKKYADEKMSAKEKDKI 316
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
S++G+ REGLT ++SV+V P+FEGQTKT+LGN EV VD+ V E LT YLE +P
Sbjct: 317 SITGDDFREGLTAVVSVKVMEPQFEGQTKTKLGNSEVSGAVDKIVSEMLTNYLEENPSEA 376
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K + A KA AAK+AR++V++KS + S LPGKLADCSS P ESEIF+VEGDSA
Sbjct: 377 QIIVDKVVLAAKARQAAKKAREMVQRKSPMGGSGLPGKLADCSSKDPYESEIFLVEGDSA 436
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK--- 355
GG+AKQGRDR FQAILPLRGKILNVE+ + +++NEEI+N+ ALG+ + E+ K
Sbjct: 437 GGTAKQGRDRHFQAILPLRGKILNVEKAMQHKVFENEEIKNIFTALGVTIGTEEDAKALN 496
Query: 356 -EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
E LRYHKI+I+TDADVDG+HI TL+LTFF+RY K L + G IY+ PPLY +++GKQ
Sbjct: 497 TEKLRYHKIVIMTDADVDGSHIATLILTFFFRYMKELIENGNIYIATPPLYLLKKGKQEI 556
Query: 415 YCYDDAELKKVKSSFPSNAL---YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
Y + D E ++++ + S+QR+KGLGEM QLW+TT+NPE R L+Q+ IE+A
Sbjct: 557 YAWGDKEREEIQRQMSPDGTGRGISVQRYKGLGEMNAEQLWDTTMNPENRKLRQVNIENA 616
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
+EA+ +FS LMG V R+E I+ A N+D
Sbjct: 617 SEADRIFSMLMGDDVPPRREFIEKNAVYANID 648
>gi|333395413|ref|ZP_08477232.1| DNA gyrase, B subunit [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 613
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 235/503 (46%), Positives = 328/503 (65%), Gaps = 8/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ + RGK T L + + GT +RFWPD +F +D + RIRELAF
Sbjct: 116 YYMDFKRGKVATQLKE--ISTAPEHEHGTIVRFWPDPDIFQETTVYDIKILTTRIRELAF 173
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVD-GITI 121
LN L I + ED E+ E+ + GG++ YV++L+ K+ L + + V+ GIT+
Sbjct: 174 LNKGLRITI--EDLRGEEPSKQEFHYEGGIKSYVEFLDNGKQDLFPEPIYVEGVEKGITV 231
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ D Y ++ + N+I T +GGTH G K +LTR +N K+ +K+ + +LS
Sbjct: 232 EVALQYTED-YHTNLMTFTNNIHTYEGGTHEAGFKTALTRVINDYAHKNGLMKENEGNLS 290
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG+T ++S++ P+P+FEGQTKT+LGN + R V D + E + YL +P + +
Sbjct: 291 GEDVREGMTAVVSIKHPDPQFEGQTKTKLGNSDARTVTDHTFAETFSRYLMENPKIAKQV 350
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A KA LAAKRAR++ R+KS L S+LPGKLAD SS PE SE+FIVEGDSAGGS
Sbjct: 351 VDKGLLASKARLAAKRAREVTRKKSGLEISNLPGKLADNSSKDPEISELFIVEGDSAGGS 410
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R QAILP+RGKILNVE+ + NEEI+ L A+G G G++F RYH
Sbjct: 411 AKQGRSRLTQAILPIRGKILNVEKASIDRILANEEIRTLFTAMGTGF-GDEFDLAKARYH 469
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLT FYR+ + + + G +Y+ PPLY+V +GK +Y D E
Sbjct: 470 KLIIMTDADVDGAHIRTLLLTLFYRFMRPVVEAGYVYIAQPPLYQVRQGKMQRYIDSDEE 529
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ + + IQR+KGLGEM QLWETT++P+ R L ++ + DA EA+ VFS L
Sbjct: 530 LEQILGTLQPSPKPVIQRYKGLGEMDASQLWETTMDPDYRRLLRVDVTDAKEADEVFSML 589
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +VD R++ I+ A+ V NLD
Sbjct: 590 MGDKVDPRRKFIEENAHYVENLD 612
>gi|313887747|ref|ZP_07821429.1| DNA gyrase, B subunit [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312846356|gb|EFR33735.1| DNA gyrase, B subunit [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 637
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/507 (47%), Positives = 349/507 (68%), Gaps = 16/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+++RG + L V+ + D GT I F PD +F T ++F +A R RE+AF
Sbjct: 143 YRQEFARGIRKSDL--EVIGETNTDETGTTIYFEPDDTIFET-VEFSDEVLAKRFREMAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGIT 120
LN + I E D NE F + GG++ +V+++N KKP+HD + + ++ +
Sbjct: 200 LNKGIKIEFIDERKD-----LNEVFHYEGGIKSFVEFINAKKKPVHDEIIYIDEIREETA 254
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q+ +D+YS+ +L +AN+I T +GGTH+ G +++LTRTLN G+K+ +K+K+ +L
Sbjct: 255 VEIAIQY-TDSYSEVVLSFANNINTEEGGTHLSGFRSALTRTLNDYGRKNNIIKEKEENL 313
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGE VREG++ +ISV++P+P+FEGQTK +LGN E R +VD + E L +LE +P V
Sbjct: 314 SGEDVREGISAVISVKLPDPQFEGQTKGKLGNSETRGIVDSVLSEDLAVFLEENPRVGKQ 373
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
IL K+LSA +A AA++ARDL R+K+ L S +LPGKLADC + P+ +EIF+VEG+SAGG
Sbjct: 374 ILDKALSARRAREAARKARDLTRKKNNLESMTLPGKLADCQNDDPKRNEIFLVEGNSAGG 433
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GRD +QAILPLRGKI+NVE+ M + EI+ +I A G G+ GE+F E LRY
Sbjct: 434 SAKDGRDSAYQAILPLRGKIMNVEKARLDRMLNSSEIRAMITAFGTGI-GEEFDLEKLRY 492
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDD 419
KIII+TDADVDGAHI TLLLTFF+RY K L +EG +YV PLY +E+G ++ +YC+++
Sbjct: 493 DKIIIMTDADVDGAHIMTLLLTFFFRYMKPLIEEGHVYVAQAPLYGIEKGTKILRYCHNE 552
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+ + + + +I+R+KGLGEM P QLWETT+NP+ R+L ++ I+D AEA+ FS
Sbjct: 553 KELRLALKEYKDSKV-NIKRYKGLGEMDPEQLWETTMNPDNRLLLKVNIDDLAEADDTFS 611
Query: 480 SLMGARVDTRKELIQNAANLVNLDHLD 506
LMG V+ R++ I N V D++D
Sbjct: 612 ILMGTEVEPRRDFI--TENAVYADYID 636
>gi|401563979|ref|ZP_10804902.1| DNA gyrase, B subunit [Selenomonas sp. FOBRC6]
gi|400189260|gb|EJO23366.1| DNA gyrase, B subunit [Selenomonas sp. FOBRC6]
Length = 684
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 246/499 (49%), Positives = 333/499 (66%), Gaps = 12/499 (2%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
++RG VT H + + + GTR+ F PD ++FT + T+ R+RELAFLN
Sbjct: 195 FARG--VTQEKLHT--IGTCETTGTRVHFVPDPEIFTVT-TYSFETLKHRLRELAFLNHG 249
Query: 67 LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLAL 125
+TI L D E+ + + F GG+ +V LN K+ +++ + F D +++A+
Sbjct: 250 ITITLV--DERGEEERRETFHFDGGIRSFVAHLNRKKETINEEPIYFNGVKDDTVVEIAM 307
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
Q+ +D+Y + + + N+I T +GGTH+ G K +LTR N ++ +KDKD +LSGE V
Sbjct: 308 QY-NDSYQENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARRLNVLKDKDGNLSGEDV 366
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 245
REGLTC+IS++V P+FEGQTKT+LGN EVR +VD V E L EY E +P V +L K+
Sbjct: 367 REGLTCVISLKVREPQFEGQTKTKLGNSEVRGIVDSIVTEGLMEYFEENPAVTKRVLDKA 426
Query: 246 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 305
L A +A AA++AR+L R+K+ L SSLPGKLADCS P++ EI+IVEGDSAGGSAKQG
Sbjct: 427 LMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPDQCEIYIVEGDSAGGSAKQG 486
Query: 306 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 365
RDRRFQAILPLRGKILNVE+ ++ N EI+ +I A G G+ GE+F RY KIII
Sbjct: 487 RDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGI-GEEFDLAKRRYSKIII 545
Query: 366 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 425
+TDADVDGAHIRTLLLTFFYRY K L D G +Y+ PPLY++ + K+ Y Y DAE +K
Sbjct: 546 MTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVYIAQPPLYQIRKDKKHFYTYSDAEQEKK 605
Query: 426 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 485
+ +IQR+KGLGEM P QLWETT+NPE R + Q+ EDA A+ +F+ LMG +
Sbjct: 606 LDEIGREGV-TIQRYKGLGEMNPEQLWETTMNPEGRTMLQVGAEDAEAADELFTILMGDK 664
Query: 486 VDTRKELIQNAANLV-NLD 503
V+ R++ I+ A LV NLD
Sbjct: 665 VEPRRQFIEENARLVRNLD 683
>gi|448346437|ref|ZP_21535322.1| DNA gyrase subunit B [Natrinema altunense JCM 12890]
gi|445632640|gb|ELY85851.1| DNA gyrase subunit B [Natrinema altunense JCM 12890]
Length = 642
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 227/498 (45%), Positives = 334/498 (67%), Gaps = 7/498 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ + G+PV + V ++ + GT IRFWPD +F T + +T++ R+RELAF
Sbjct: 141 FRHAFEAGEPVGDME-RVRDMEPDEETGTEIRFWPDTDIFETG-EISFSTLSNRLRELAF 198
Query: 63 LNPKLTIALR--KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN + I LR +E++D + Y + GG+ E+V +LN + +HD V+ F + I
Sbjct: 199 LNSGVRITLRDEREETDEGETVAETYEYDGGIREFVDYLNETRSAMHDDVIYFEDEAQNI 258
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+Q ++ ++ +AN+I T +GGTH+ G K +LTR +N ++ + D D +
Sbjct: 259 QVEVAMQ-ATEELQGSIHAFANNINTREGGTHLTGFKTALTRCVNDYANENDLLSDLDNN 317
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L GE +REGLT +IS++ P+P+FEGQTKT+LGN EVR +V+ ++ E L Y E HPD +
Sbjct: 318 LKGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIVESAMHEGLGTYFEEHPDTAE 377
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I++K++ A KA +AA++A +L R+KS L S+SLPGKLADC + P+E+E+FI EGDSAG
Sbjct: 378 AIVAKAVEAAKARMAAQKAEELTRRKSALESTSLPGKLADCQTKDPDEAELFIAEGDSAG 437
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQ R+ FQAILP++GKILNVE+ + +N+EI+N+I A+G G+ G++F E +R
Sbjct: 438 GSAKQARNPDFQAILPIKGKILNVEKHRLDRILENDEIRNMITAIGAGI-GDEFDIEDVR 496
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
Y KII+ TDADVDGAHIRTLLLTFFYR+ + L + G +Y PPLY++ + +
Sbjct: 497 YKKIIMATDADVDGAHIRTLLLTFFYRHMRPLLEGGYVYATQPPLYRIRYRGETYDAMTE 556
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
AE + + +QRFKGLGEM P QLWETT+NP+ R+LKQ+ IEDAA A+ +FS
Sbjct: 557 AERDAIVAEKCDGTPSQVQRFKGLGEMNPEQLWETTMNPDNRILKQITIEDAAAADKMFS 616
Query: 480 SLMGARVDTRKELIQNAA 497
LMG V+ RK+ I++ A
Sbjct: 617 VLMGDAVEPRKQFIKDHA 634
>gi|163786113|ref|ZP_02180561.1| DNA gyrase subunit B [Flavobacteriales bacterium ALC-1]
gi|159877973|gb|EDP72029.1| DNA gyrase subunit B [Flavobacteriales bacterium ALC-1]
Length = 649
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/514 (44%), Positives = 333/514 (64%), Gaps = 26/514 (5%)
Query: 3 YHQKYSRGK---PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRE 59
Y Q+Y RGK PV T D++GT + F PD +FT ++++++T+A R+RE
Sbjct: 148 YEQEYERGKAMYPVKT-------TGDTDKRGTTVTFKPDSTIFTQTLEYNYDTLASRLRE 200
Query: 60 LAFLNPKLTIAL-----RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFR 113
LA+LN +T+ L KED E ++ GL+E++++L+ + PL DV+ F
Sbjct: 201 LAYLNKGITVHLIDKRHTKEDGSFEGETFHS---KEGLKEFIKFLDATRDPLMKDVIAFE 257
Query: 114 KDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTV 173
+ +G+ +++A+ + + +Y++ + Y N+I T +GGTH+ G + LT TL S +
Sbjct: 258 GEKNGVPVEVAMIYNT-SYAENLHSYVNNINTHEGGTHLSGFRRGLTHTLKKFADSSGML 316
Query: 174 KDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLEL 233
++G+ REGLT IISV+V P+FEGQTKT+LGN EV V Q+V E LT+YLE
Sbjct: 317 DKLKFDVAGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVSASVSQAVSEMLTDYLEE 376
Query: 234 HPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIV 293
HPD +I+ K + A +A AA++AR++V++K+V+ LPGKL+DCS PE EI++V
Sbjct: 377 HPDDAKTIVQKVILAAQARHAAQKAREMVQRKTVMSIGGLPGKLSDCSEQNPEICEIYLV 436
Query: 294 EGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDF 353
EGDSAGG+AK GRDR FQAILPLRGKILNVE+ +++NEEI+N+ ALG+ + E+
Sbjct: 437 EGDSAGGTAKMGRDRAFQAILPLRGKILNVEKAMTHKVFENEEIKNIFTALGVTIGTEED 496
Query: 354 KK----EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVER 409
K LRYHKI+I+ DAD+DG+HI TL+LTFF+RY K L + G IY+ PPLY V++
Sbjct: 497 SKALNLSKLRYHKIVIMCDADIDGSHIETLILTFFFRYMKELIENGHIYIATPPLYLVKK 556
Query: 410 GKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIE 469
G + Y ++D E + + A IQR+KGLGEM +QLW+TT+NPE R L+Q+ I+
Sbjct: 557 GAKKAYAWNDDERMALMDQYGDGA--KIQRYKGLGEMNAIQLWDTTMNPEFRTLRQIQID 614
Query: 470 DAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
+ EA+ VFS LMG V R+E I+ A N+D
Sbjct: 615 NGVEADRVFSMLMGDEVPPRREFIEKNAVYANID 648
>gi|374338384|ref|YP_005095096.1| DNA gyrase subunit B [Streptococcus macedonicus ACA-DC 198]
gi|372284496|emb|CCF02771.1| DNA gyrase subunit B [Streptococcus macedonicus ACA-DC 198]
Length = 650
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 230/510 (45%), Positives = 343/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG V+ L + DR GT + F PD ++FT FD + +A RI+ELAF
Sbjct: 150 YYQEYRRGHVVSDLAV----IGDTDRHGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAF 205
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I++ ++E + EK+ Y + GG+ YV+++N +K+ + + + ++DGI
Sbjct: 206 LNRGLRISITDKREGIEQEKH----YHYEGGISSYVEFINENKEVIFENPIYTDGELDGI 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + +Y +T++ +AN+I T +GGTH +G + +LTR +N +++K +K+KD +
Sbjct: 262 SVEVAMQYTT-SYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKLLKEKDDN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E + +L +P +
Sbjct: 321 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSRFLLENPQIAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS +E+FIVEGDSAG
Sbjct: 381 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDATMNELFIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GRDR QAILP+RGKILNVE+ + NEEI++L A+G G G +F R
Sbjct: 441 GSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GAEFDVSKAR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYD 418
YHK+II+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y
Sbjct: 500 YHKLIIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQP 559
Query: 419 DA----ELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
A EL++ + + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAE
Sbjct: 560 GANQEIELQEAMARHSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAE 619
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG RV+ R+E I+ A LD
Sbjct: 620 ADKIFDMLMGDRVEPRREFIEENAVYSTLD 649
>gi|365852790|ref|ZP_09393136.1| DNA gyrase, B subunit [Lactobacillus parafarraginis F0439]
gi|363714003|gb|EHL97556.1| DNA gyrase, B subunit [Lactobacillus parafarraginis F0439]
Length = 647
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/505 (46%), Positives = 327/505 (64%), Gaps = 12/505 (2%)
Query: 3 YHQKYSRGKPVTTLTC--HVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
Y+ ++RG T + HV S D GT++ F PD +F +D + R+REL
Sbjct: 150 YYMDFARGHVTTPMKVIDHV----SDDLHGTKVHFVPDPDIFRETTTYDIKILTARLREL 205
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGI 119
AFLN L I +R D PEK ++ + GG+ YV++L+ DK L D + + V +GI
Sbjct: 206 AFLNKGLRIVIR--DMRPEKPTEKDFLYEGGILHYVEYLDRDKDTLLDEPIYVEGVENGI 263
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
T+++A+ + D Y T++ + N+I T +GGTH EG K +LTR +N +K+ +KD + +
Sbjct: 264 TVEVAIDYSED-YHSTLMTFTNNIHTYEGGTHEEGFKRALTRVVNDYARKNNLIKDNEAN 322
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSGE VREG T ++S++ +P+FEGQTKT+LGN + R D+ ++ +++L +P +
Sbjct: 323 LSGEDVREGTTAVVSIKHRDPQFEGQTKTKLGNSDARTATDRIFSDHFSKFLMENPKLAR 382
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ + L A KA AAKRAR++ R+KS L S+LPGKLAD +S P SE+FIVEGDSAG
Sbjct: 383 KIVDRGLLASKARSAAKRAREVTRRKSGLEISNLPGKLADNTSKDPRISELFIVEGDSAG 442
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGR R QAILP+RGKILNVE+ + NEEI++L A+G G G+DF +
Sbjct: 443 GSAKQGRSRLTQAILPIRGKILNVEKASMDRILANEEIRSLFTAMGTGF-GDDFDLSKVN 501
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHI+TLLLT YRY + L D G +YV PPLY+V +GK +Y D
Sbjct: 502 YHKLIIMTDADVDGAHIQTLLLTLIYRYMRPLIDAGYVYVAQPPLYQVRQGKMQRYIDSD 561
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL + + + IQR+KGLGEM QLW+TT+NPE R L ++ DAAEAN VFS
Sbjct: 562 EELNQFLGTLQPSPKPVIQRYKGLGEMDAEQLWDTTMNPENRHLLRVESTDAAEANHVFS 621
Query: 480 SLMGARVDTRKELIQNAANLV-NLD 503
LMG +V+ R+E I++ A V NLD
Sbjct: 622 MLMGDKVEPRREFIEDNATFVENLD 646
>gi|146319164|ref|YP_001198876.1| DNA gyrase subunit B [Streptococcus suis 05ZYH33]
gi|253752208|ref|YP_003025349.1| DNA gyrase subunit B [Streptococcus suis SC84]
gi|253754034|ref|YP_003027175.1| DNA gyrase subunit B [Streptococcus suis P1/7]
gi|253755968|ref|YP_003029108.1| DNA gyrase subunit B [Streptococcus suis BM407]
gi|386580405|ref|YP_006076810.1| DNA gyrase subunit B [Streptococcus suis JS14]
gi|386582419|ref|YP_006078823.1| DNA gyrase subunit B [Streptococcus suis SS12]
gi|386588605|ref|YP_006085006.1| DNA gyrase subunit B [Streptococcus suis A7]
gi|403061973|ref|YP_006650189.1| DNA gyrase subunit B [Streptococcus suis S735]
gi|145689970|gb|ABP90476.1| DNA gyrase [Streptococcus suis 05ZYH33]
gi|226237519|dbj|BAH47268.1| DNA gyrase subunit B [Streptococcus suis]
gi|251816497|emb|CAZ52133.1| DNA gyrase subunit B [Streptococcus suis SC84]
gi|251818432|emb|CAZ56261.1| DNA gyrase subunit B [Streptococcus suis BM407]
gi|251820280|emb|CAR46765.1| DNA gyrase subunit B [Streptococcus suis P1/7]
gi|319758597|gb|ADV70539.1| DNA gyrase subunit B [Streptococcus suis JS14]
gi|353734565|gb|AER15575.1| DNA gyrase subunit B [Streptococcus suis SS12]
gi|354985766|gb|AER44664.1| DNA gyrase subunit B [Streptococcus suis A7]
gi|402809299|gb|AFR00791.1| DNA gyrase subunit B [Streptococcus suis S735]
Length = 650
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 231/513 (45%), Positives = 332/513 (64%), Gaps = 25/513 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG+ V L V DR GT + F PD ++FT +FD + RI+ELAF
Sbjct: 150 YFQEYKRGEVVADLEV----VGETDRSGTTVHFTPDPEIFTETTEFDFAKLNKRIQELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L +++ + E Q EY + GG+ YV++LN +K + + + + ++D IT+
Sbjct: 206 LNRGLNLSITDKREGVE--QTKEYHYEGGIASYVEYLNENKDVIFETPIYTEGEMDDITV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + +Y + ++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 264 EVAMQYTT-SYHENVVSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ P P+FEGQTKT+LGN EV K+ ++ + E+L +P + I
Sbjct: 323 GEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVKITNRLFSDAFAEFLLENPQIARRI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGS
Sbjct: 383 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDAAKTELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 443 AKSGRDREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-------- 413
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PP+Y ++ G ++
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGIKVGSEIKEYIQPGV 561
Query: 414 ---QYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED 470
Q D E S P +IQR+KGLGEM QLWETT+NPE R++ ++ ++D
Sbjct: 562 NQEQELQDALERHSTGRSKP-----TIQRYKGLGEMDDHQLWETTMNPENRLMARVSVDD 616
Query: 471 AAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AAEA+ +F LMG +V+ R+E I+ A LD
Sbjct: 617 AAEADKIFDMLMGDKVEPRREFIEENAVYSTLD 649
>gi|357043575|ref|ZP_09105266.1| DNA gyrase, B subunit [Prevotella histicola F0411]
gi|355368239|gb|EHG15660.1| DNA gyrase, B subunit [Prevotella histicola F0411]
Length = 658
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 235/518 (45%), Positives = 342/518 (66%), Gaps = 23/518 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + + D+ GTR +FWPD +FTT + F + +A R+RELA+
Sbjct: 146 YQQEYEKGKPLYPVKV----IGETDKTGTRQQFWPDGDIFTTTV-FQWDIVARRMRELAY 200
Query: 63 LNPKLTIALRKEDSDPEKNQY-NEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN + I L DPE + E F A GL+E+V++++ ++ L D V+ + + GI
Sbjct: 201 LNAGIKITLTDLRPDPETGKTRTEVFHAKDGLKEFVRYVDRHRQHLFDDVIYLKTEKQGI 260
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKD 175
I++A+ + +D Y++ + Y N+I TI+GGTH++G +A+LTRTL + SK ++
Sbjct: 261 PIEVAVMYNTD-YTENIHSYVNNINTIEGGTHLQGFRAALTRTLKAYADNDPQISKQIEK 319
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
I ++GE REGLT +IS++V P+FEGQTKT+LGN EV V Q+V E LT+YLE HP
Sbjct: 320 AKIEITGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVSGAVQQAVGEALTDYLEEHP 379
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
+ I +K + A A +AA++AR+ V++K+V+ LPGKLADCS+ P++ EIF+VEG
Sbjct: 380 NEAKMICNKVILAATARVAARKARESVQRKNVMSGGGLPGKLADCSNKDPKDCEIFLVEG 439
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDF 353
DSAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV+ +
Sbjct: 440 DSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEAESVMNIIQSIGVRFGVEESEG 499
Query: 354 KKEA----LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVER 409
+ EA LRY KIII+TDADVDG+HI TL++T FYRY + ++G +Y+ PPLYK
Sbjct: 500 EFEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMPKVIEQGHLYIATPPLYKCTF 559
Query: 410 GKQVQYCYDD----AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQ 465
K +YCY + A L K + QR+KGLGEM P QLWETT++P+ R+LKQ
Sbjct: 560 KKVSEYCYTEQQRQAFLDKYGNGTEDGKTIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQ 619
Query: 466 LVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
+ IE+AA+A+ +FS LMG V+ R++ I+ A N+D
Sbjct: 620 VTIENAADADEIFSMLMGDDVEPRRDFIEKNATYANID 657
>gi|223934277|ref|ZP_03626203.1| DNA gyrase, B subunit [Streptococcus suis 89/1591]
gi|330833155|ref|YP_004401980.1| DNA gyrase subunit B [Streptococcus suis ST3]
gi|386584547|ref|YP_006080950.1| DNA gyrase subunit B [Streptococcus suis D9]
gi|386586607|ref|YP_006083009.1| DNA gyrase subunit B [Streptococcus suis D12]
gi|417089198|ref|ZP_11955389.1| DNA gyrase subunit B [Streptococcus suis R61]
gi|223897052|gb|EEF63487.1| DNA gyrase, B subunit [Streptococcus suis 89/1591]
gi|329307378|gb|AEB81794.1| DNA gyrase subunit B [Streptococcus suis ST3]
gi|353534147|gb|EHC03779.1| DNA gyrase subunit B [Streptococcus suis R61]
gi|353736693|gb|AER17702.1| DNA gyrase subunit B [Streptococcus suis D9]
gi|353738753|gb|AER19761.1| DNA gyrase subunit B [Streptococcus suis D12]
Length = 650
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 231/513 (45%), Positives = 332/513 (64%), Gaps = 25/513 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG+ V L V DR GT + F PD ++FT +FD + RI+ELAF
Sbjct: 150 YFQEYKRGEVVADLEV----VGETDRSGTTVHFTPDPEIFTETTEFDFAKLNKRIQELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L +++ + E Q EY + GG+ YV++LN +K + + + + ++D IT+
Sbjct: 206 LNRGLNLSITDKREGVE--QTKEYHYEGGIASYVEYLNENKDVIFETPIYTEGEMDDITV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + +Y + ++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 264 EVAMQYTT-SYHENVVSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ P P+FEGQTKT+LGN EV K+ ++ + E+L +P + I
Sbjct: 323 GEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVKITNRLFSDAFAEFLLENPQIARRI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGS
Sbjct: 383 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDATKTELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 443 AKSGRDREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-------- 413
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PP+Y ++ G ++
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGIKVGSEIKEYIQPGV 561
Query: 414 ---QYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED 470
Q D E S P +IQR+KGLGEM QLWETT+NPE R++ ++ ++D
Sbjct: 562 NQEQELQDALERHSTGRSKP-----TIQRYKGLGEMDDHQLWETTMNPENRLMARVSVDD 616
Query: 471 AAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AAEA+ +F LMG +V+ R+E I+ A LD
Sbjct: 617 AAEADKIFDMLMGDKVEPRREFIEENAVYSTLD 649
>gi|331086961|ref|ZP_08336037.1| DNA gyrase subunit B [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330409622|gb|EGG89061.1| DNA gyrase subunit B [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 638
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/505 (47%), Positives = 332/505 (65%), Gaps = 11/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK L V+ D+ GT++ F PD ++F +FD+N + R RE+AF
Sbjct: 140 YKQRYERGKSAYQL--KVVGECEADKTGTKVTFLPDAEIFEET-EFDYNILKQRFREMAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L L I L D PE+ + + GG++E+VQ+LN K PL++ ++ DG+ +
Sbjct: 197 LTKNLKIVLA--DERPEERIEKTFHYEGGIKEFVQYLNKSKTPLYEQIIYCEGQKDGVAV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q +D+Y+D G+ N+I T +GGTH+ G + +LT+T N +K+K +KD + +LS
Sbjct: 255 EVAMQH-NDSYTDNTYGFVNNITTPEGGTHVVGFRNALTKTFNEYARKNKLLKDSEPNLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT IISV++ +P+FEGQTK +LGN E R VD + L +LE +P V +
Sbjct: 314 GEDIREGLTAIISVKIQDPQFEGQTKQKLGNSEARGAVDSVLSTQLEIFLEQNPQVAKVV 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KS+ A +A AA++ARDL R+KS L SLPGKLADCS + EI+IVEGDSAGGS
Sbjct: 374 IEKSVLAQRAREAARKARDLTRRKSALEGMSLPGKLADCSEKDASKCEIYIVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK RDR QAILPLRGKILNVE+ +Y N EI+ +I A G G+ EDF LRYH
Sbjct: 434 AKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGIH-EDFDISKLRYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TLLLTF YR+ L +G +Y+ PPLYK+E+ K+V Y Y D E
Sbjct: 493 KIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYKLEKNKKVWYAYSDEE 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI--EDAAEANVVFS 479
L K+ + IQR+KGLGEM QLWETT++PE R+L ++ + E ++E ++ F+
Sbjct: 553 LNKILQEVGRDGNNKIQRYKGLGEMDAEQLWETTMDPEHRVLLRVTMDEESSSELDLTFT 612
Query: 480 SLMGARVDTRKELI-QNAANLVNLD 503
+LMG +V+ R+E I +NA + NLD
Sbjct: 613 TLMGDKVEPRREFIEENAKYVQNLD 637
>gi|146321367|ref|YP_001201078.1| DNA gyrase [Streptococcus suis 98HAH33]
gi|145692173|gb|ABP92678.1| DNA gyrase [Streptococcus suis 98HAH33]
Length = 528
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 231/513 (45%), Positives = 332/513 (64%), Gaps = 25/513 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG+ V L V DR GT + F PD ++FT +FD + RI+ELAF
Sbjct: 28 YFQEYKRGEVVADLEV----VGETDRSGTTVHFTPDPEIFTETTEFDFAKLNKRIQELAF 83
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L +++ + E Q EY + GG+ YV++LN +K + + + + ++D IT+
Sbjct: 84 LNRGLNLSITDKREGVE--QTKEYHYEGGIASYVEYLNENKDVIFETPIYTEGEMDDITV 141
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + +Y + ++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 142 EVAMQYTT-SYHENVVSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLT 200
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ P P+FEGQTKT+LGN EV K+ ++ + E+L +P + I
Sbjct: 201 GEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVKITNRLFSDAFAEFLLENPQIARRI 260
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGS
Sbjct: 261 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDAAKTELFIVEGDSAGGS 320
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 321 AKSGRDREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 379
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-------- 413
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PP+Y ++ G ++
Sbjct: 380 KLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGIKVGSEIKEYIQPGV 439
Query: 414 ---QYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED 470
Q D E S P +IQR+KGLGEM QLWETT+NPE R++ ++ ++D
Sbjct: 440 NQEQELQDALERHSTGRSKP-----TIQRYKGLGEMDDHQLWETTMNPENRLMARVSVDD 494
Query: 471 AAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AAEA+ +F LMG +V+ R+E I+ A LD
Sbjct: 495 AAEADKIFDMLMGDKVEPRREFIEENAVYSTLD 527
>gi|408491756|ref|YP_006868125.1| DNA gyrase subunit B GyrB [Psychroflexus torquis ATCC 700755]
gi|408469031|gb|AFU69375.1| DNA gyrase subunit B GyrB [Psychroflexus torquis ATCC 700755]
Length = 646
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/509 (43%), Positives = 343/509 (67%), Gaps = 16/509 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RGK + V P + +GT I F PD ++F +++F + T+A R+REL++
Sbjct: 145 WEQEYERGKAIYP----VKPTGDTEHKGTEITFKPDSEIFQESVEFKYETLAKRLRELSY 200
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDG 118
LN + I++ R+ + D E Q +E++ GL+E++++++ +++P+ DV+ + +
Sbjct: 201 LNKGIRISIIDKRQTNDDGEYRQ-DEFYSEEGLKEFIRFIDQNREPIITDVISMESEKNN 259
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++A+ + +++YS+ + Y N+I T +GGTH+ G + LT TL S +
Sbjct: 260 IPVEVAMVY-NNSYSENLHSYVNNINTHEGGTHLSGFRRGLTATLKKYADNSGLLDKLKF 318
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
++G+ REGLT I+SV+V NP+FEGQTKT+LGN E+ V Q+V E L YLE +P+
Sbjct: 319 EITGDDFREGLTAIVSVKVANPQFEGQTKTKLGNRELTSAVSQAVTEMLEIYLEENPNDA 378
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
+I+ K + A +A AAK+AR++V++K+V+ LPGKL+DCS PE E+F+VEGDSA
Sbjct: 379 KTIVQKVMLAAQARHAAKKAREMVQRKTVMSGGGLPGKLSDCSEQDPEACEVFLVEGDSA 438
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK--- 355
GG+AKQGRDR+FQAILPLRGKILNVE+ + +++NEEI+N+ ALG+ + E+ K
Sbjct: 439 GGTAKQGRDRKFQAILPLRGKILNVEKAMQHRVFENEEIKNIYTALGVTIGTEEDSKALN 498
Query: 356 -EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
LRYHK+II+ DADVDG+HI TL+LTFF+RY K L + IY+ PPLY +++G + +
Sbjct: 499 LSKLRYHKVIIMCDADVDGSHIATLILTFFFRYMKELIEASHIYIATPPLYLIKKGSKKR 558
Query: 415 YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
Y +++ E ++ + + ++ S+QR+KGLGEM +QLW+TT+NPE R+L+++ I D AEA
Sbjct: 559 YAWNEKERNEIVNEYKTSV--SVQRYKGLGEMNAIQLWDTTMNPENRILRRVTIVDMAEA 616
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLD 503
+ +FS LMG V R+E I+ A N+D
Sbjct: 617 DRIFSMLMGDEVPPRREFIEQNAVYANID 645
>gi|124008106|ref|ZP_01692804.1| DNA gyrase, B subunit [Microscilla marina ATCC 23134]
gi|123986354|gb|EAY26167.1| DNA gyrase, B subunit [Microscilla marina ATCC 23134]
Length = 659
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 234/512 (45%), Positives = 339/512 (66%), Gaps = 18/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y +G P T + + D+ GT I F PD +FT AI++ + TI+ R+REL++
Sbjct: 154 FQQEYKQGDPQTEVEV----IGESDKTGTVIHFVPDATIFT-AIEYKYETISQRLRELSY 208
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLN-TDKKPLHDVVGFRKDVDGI 119
LN +LT+ + + K ++ GGL E+V++L+ T + L + + + G+
Sbjct: 209 LNKGIRLTMVDHRVKGEDGKALTEDFLSEGGLTEFVRYLDETRQSFLPEPIYVEGEKSGV 268
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+ +A + + +YS+ + Y N+I TI+GGTHI G + +LTRTL S K ++ +
Sbjct: 269 PVQVAFTY-NHSYSENVYSYVNNINTIEGGTHISGFRRALTRTLKSYADKEGMLEKAKVD 327
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
++G+ REGLT +ISV+V P+FEGQTKT+LGN EV VVD + E L+++LE +P
Sbjct: 328 VTGDDFREGLTAVISVKVAEPQFEGQTKTKLGNSEVMGVVDNATSEALSKFLEENPKQAK 387
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
SI+ K + A +A AA++AR++V++K+VL S LPGKLADCS P E+++VEGDSAG
Sbjct: 388 SIIQKVILAAQARHAARKAREMVQRKNVLSGSGLPGKLADCSEKDPGLCELYLVEGDSAG 447
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK---- 355
GSAKQGRDR QAILPLRGKILNVE+ E +Y NEEI+N+I ALG+ +D K
Sbjct: 448 GSAKQGRDRNTQAILPLRGKILNVEKAQEYKIYDNEEIKNIITALGVTFGKDDDDKALNM 507
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
E LRYHKIII+TDADVDG+HIRTL+LTFF+RY + L + G +Y+ +PP Y V++GK+ Y
Sbjct: 508 EKLRYHKIIIMTDADVDGSHIRTLILTFFFRYMRDLIESGYVYIALPPFYLVKKGKKELY 567
Query: 416 CYDDAE----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
++D + +K++ + +++ +QR+KGLGEM P QLWETT+NPE R LKQ+ IE A
Sbjct: 568 AWNDDDRDVAIKELAGNGKPESVH-VQRYKGLGEMNPEQLWETTMNPENRSLKQVTIESA 626
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A A+ +FS LMG V R+E I+ A N+D
Sbjct: 627 AGADHLFSMLMGDDVPPRREFIEENAKYANVD 658
>gi|399924562|ref|ZP_10781920.1| DNA gyrase subunit B [Peptoniphilus rhinitidis 1-13]
Length = 637
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 233/506 (46%), Positives = 350/506 (69%), Gaps = 14/506 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+++RGK + L +V+ K+ GT I F PD +F T ++F + ++ R RE+AF
Sbjct: 143 YRQEFARGKRKSEL--NVIGKTKKEDTGTTIYFEPDDTIFET-VEFSFDVLSKRFREMAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
LN + I E D KN Y + GG++ +V+++N KKP+HD + + ++ + +
Sbjct: 200 LNKGIKI----EFIDERKNIKEIYHYEGGIKSFVEFINEKKKPIHDEIIYIDEIREETAV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+YS+ +L +AN+I T +GG+H+ G +++LTRTLN G+K+ +K+K+ +LS
Sbjct: 256 EIAIQY-TDSYSEVVLAFANNINTEEGGSHLSGFRSALTRTLNDYGRKNNIIKEKEENLS 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG++ +ISV++P+P+FEGQTK +LGN E R ++D + E L+ +LE +P V I
Sbjct: 315 GEDVREGISAVISVKLPDPQFEGQTKAKLGNSETRGIIDSVLSEELSAFLEENPKVGKQI 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K+LSA +A AA+RARDL R+K+ + S +LPGKL+DC + P +EIF+VEG+SAGGS
Sbjct: 375 LDKALSARRAREAARRARDLTRKKNNIESMTLPGKLSDCQNDDPSRNEIFLVEGNSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRD +QAILPLRGKI+NVE+ M + EI+ +I A G G+ GE+F + LRY
Sbjct: 435 AKDGRDSAYQAILPLRGKIMNVEKARLDKMLNSSEIRAMITAFGTGI-GEEFDIKKLRYD 493
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
KIII+TDADVDGAHI TLLLTFF+RY K L +EG +YV PL+ +E+G ++ +YC+++
Sbjct: 494 KIIIMTDADVDGAHIMTLLLTFFFRYMKPLIEEGHVYVAQAPLFGIEKGTKILRYCHNEK 553
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+ + + +I+R+KGLGEM P QLWETT+NP+ R+L ++ I+D EA+ F+
Sbjct: 554 ELRLAVKEYKDTKI-NIKRYKGLGEMDPEQLWETTMNPDNRLLLKVNIDDITEADDTFTV 612
Query: 481 LMGARVDTRKELIQNAANLVNLDHLD 506
LMG V+ R+E I N V D++D
Sbjct: 613 LMGTEVEPRREFI--TENAVYADYID 636
>gi|290968148|ref|ZP_06559693.1| DNA gyrase, B subunit [Megasphaera genomosp. type_1 str. 28L]
gi|335049908|ref|ZP_08542891.1| DNA gyrase, B subunit [Megasphaera sp. UPII 199-6]
gi|290781823|gb|EFD94406.1| DNA gyrase, B subunit [Megasphaera genomosp. type_1 str. 28L]
gi|333762037|gb|EGL39553.1| DNA gyrase, B subunit [Megasphaera sp. UPII 199-6]
Length = 640
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 242/500 (48%), Positives = 340/500 (68%), Gaps = 10/500 (2%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
++RG LT ++ + GT + F PD ++F + +D +T+ R+RELAFLN
Sbjct: 147 FARGITEKKLT-KTRALEPGEETGTTVHFKPDPEIFPDVV-YDFDTLKTRLRELAFLNKG 204
Query: 67 LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLAL 125
L I L + E N+ Y + GGL +VQ+LN +K+ +H V+ + + + +D+A+
Sbjct: 205 LHITLT---DNREHNKQEVYCYEGGLISFVQFLNENKQAVHPTVIPLDGEKNQVMVDIAM 261
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
Q+ +D YS+ +L + N I T +GGTH+ G +++LTRT+N G+ + +K+ + +LSGE V
Sbjct: 262 QY-NDGYSENILTFVNDIFTEEGGTHLSGFRSALTRTINDYGRSAGIIKENEDNLSGEDV 320
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 245
REGLT I+SV+V P+FEGQTKT+LGN EV+ +VD V + L E+ HP SI++K+
Sbjct: 321 REGLTAIVSVKVREPQFEGQTKTKLGNSEVKGIVDTLVSDGLREFFGEHPVEAKSIVNKT 380
Query: 246 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 305
++A +A AA+RAR+L R+K+ L SSLPGKLADCS + E +EI++VEGDSAGGSAKQG
Sbjct: 381 ITASRARQAARRARELTRRKNALEISSLPGKLADCSEKSSERTEIYLVEGDSAGGSAKQG 440
Query: 306 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 365
RDR+FQAILPLRGKI+NVE+ + NEEI+ +I A G G+ GE+F RY KIII
Sbjct: 441 RDRKFQAILPLRGKIINVEKARLDKILANEEIRAMITAFGTGI-GEEFDITKRRYDKIII 499
Query: 366 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELK-K 424
+TDADVDGAHIRTLLLTFFYR+ K L EG +Y+ PPLY+V +GKQ+ Y Y D + K
Sbjct: 500 MTDADVDGAHIRTLLLTFFYRFMKPLITEGHVYIAQPPLYQVRKGKQMWYFYTDETMNAK 559
Query: 425 VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA 484
+ +QR+KGLGEM P QLWETT++PE R + Q+ +EDA EA+ +FS LMG
Sbjct: 560 LDELGRDTNNIVVQRYKGLGEMNPEQLWETTMDPEYRTMLQVHLEDAVEADRIFSVLMGD 619
Query: 485 RVDTRKELIQ-NAANLVNLD 503
+V+ R++ IQ NA + NLD
Sbjct: 620 KVEPRRQFIQENAKKVRNLD 639
>gi|328956387|ref|YP_004373773.1| DNA gyrase subunit B [Carnobacterium sp. 17-4]
gi|328672711|gb|AEB28757.1| DNA gyrase, subunit B [Carnobacterium sp. 17-4]
Length = 647
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 335/503 (66%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ+Y++GK V + + D+ GT + F PD ++F ++F + +A R+RELAF
Sbjct: 152 YHQQYAQGKVVHDVEV----IGETDKHGTTVHFVPDPEIFKETVEFHFDKLATRVRELAF 207
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN L I + ED K ++ EY + GG++ YV++LN +K L+D + + GIT+
Sbjct: 208 LNKGLKITV--EDKREGKEKFLEYHYEGGIKSYVEFLNENKTVLYDEPIFLEGEQQGITL 265
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q +D Y + +L +AN+I T +GGTH G K +LTR +N KK+K +K+ + +L+
Sbjct: 266 EVAMQH-TDGYHNNLLSFANNIHTYEGGTHEFGFKTALTRVINDYAKKNKIIKENEENLT 324
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT ++S++ P+P+FEGQTKT+LGN E R + D+ + ++L +P V I
Sbjct: 325 GEDVREGLTIVLSIKHPDPQFEGQTKTKLGNSEARTITDRLFSAHFDKFLMENPQVARQI 384
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A LAAKRAR++ R+KS L S+LPGKLADCSS P SE+FIVEGDSAGGS
Sbjct: 385 VEKGLLAARARLAAKRAREVTRKKSGLEISNLPGKLADCSSKDPTISELFIVEGDSAGGS 444
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RYH
Sbjct: 445 AKQGRSRLFQAILPIRGKILNVEKATLDRILANEEIRSLFTAMGTGF-GNDFDVSKARYH 503
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PPLY+V +GK++ Y + E
Sbjct: 504 KLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPLYQVRQGKKMVYLDSEEE 563
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L P + IQR+KGLGEM QLWETT+NPE R + Q+ ++DA EA+ L
Sbjct: 564 LDNYLKEIPLSPKPVIQRYKGLGEMDAEQLWETTMNPENRRMLQVTVDDAIEADKSCDML 623
Query: 482 MGARVDTRKELI-QNAANLVNLD 503
MG RV+ R+ I +NA + NLD
Sbjct: 624 MGDRVEPRRLFIEENARYVQNLD 646
>gi|325269651|ref|ZP_08136264.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella
multiformis DSM 16608]
gi|324988019|gb|EGC19989.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella
multiformis DSM 16608]
Length = 657
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/517 (45%), Positives = 340/517 (65%), Gaps = 22/517 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + V D+ GTR +FWPD +FTT + F + +A R+RELA+
Sbjct: 146 YQQEYEKGKPLYPVKV----VGETDKTGTRQQFWPDAGIFTTTV-FQWDIVARRMRELAY 200
Query: 63 LNPKLTIALRKEDSDPEKNQY-NEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN + I L DPE + E F A GL+E+V++++ ++ L D V+ + + I
Sbjct: 201 LNAGIKITLSDLRPDPETGKTRTEVFHAKDGLKEFVRYVDRHRQHLFDDVIYLKTEKQNI 260
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKD 175
I++A+ + +D Y++ + Y N+I TI+GGTH++G + +LTRTL + SK ++
Sbjct: 261 PIEVAVMYNTD-YTENIHSYVNNINTIEGGTHLQGFRTALTRTLKAYADNDPQISKQIEK 319
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
I ++GE REGLT +IS++V P+FEGQTKT+LGN EV V Q+V E L+ YLE HP
Sbjct: 320 AKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVSGAVQQAVGEALSNYLEEHP 379
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
+ I +K + A A +AA++AR+ V++K+V+ LPGKLADCS+ P++ EIF+VEG
Sbjct: 380 NEAKLICNKVILAATARVAARKARESVQRKNVMSGGGLPGKLADCSNKDPKDCEIFLVEG 439
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGE-D 352
DSAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV+ E D
Sbjct: 440 DSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEAESVMNIIQSIGVRFGVEDEGD 499
Query: 353 FKK--EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG 410
F+ + LRY KIII+TDADVDG+HI TL++T FYRY + ++G +Y+ PPLYK
Sbjct: 500 FEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMPKVIEQGHLYIATPPLYKCTYK 559
Query: 411 KQVQYCYDD----AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQL 466
K +YCY D A L K + QR+KGLGEM P QLWETT++P+ R+LKQ+
Sbjct: 560 KVSEYCYTDQQRQAFLDKYGNGVEDGKTIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQV 619
Query: 467 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
IE+AA+A+ +FS LMG V+ R+E I+ A N+D
Sbjct: 620 TIENAADADEIFSMLMGDDVEPRREFIEKNATYANID 656
>gi|320547135|ref|ZP_08041431.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
equinus ATCC 9812]
gi|320448261|gb|EFW89008.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
equinus ATCC 9812]
Length = 650
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/508 (44%), Positives = 338/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L + DR GT + F PD ++FT I FD + +A RI+ELAF
Sbjct: 150 HYQEYRRGHVVDDLKV----IGDTDRHGTTVHFTPDGEIFTETIVFDFDKLAKRIQELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E+ Q+ Y + GG+ YVQ++N +K + D + ++DGI++
Sbjct: 206 LNRGLRISITDKREGIEQEQH--YHYEGGISSYVQFINENKDVIFDTPIYTDGEMDGISV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N +++K +K+KD +L+
Sbjct: 264 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKILKEKDDNLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ + + +L +P + I
Sbjct: 323 GDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSDAFSRFLLENPQIAKKI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS +E+FIVEGDSAGGS
Sbjct: 383 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDVTMNELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR QAILP+RGKILNVE+ + NEEI++L A+G G G DF RYH
Sbjct: 443 AKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVTKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY-----C 416
K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G +++
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGA 561
Query: 417 YDDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
++EL+ + + + S+QR+KGLGEM QLW TT++PE R++ ++ ++DAAEA+
Sbjct: 562 NQESELQAAIERYSNGRSKPSVQRYKGLGEMDDHQLWATTMDPENRLMARVSVDDAAEAD 621
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG +V+ R+E I+ A LD
Sbjct: 622 KIFDMLMGDKVEPRREFIEENAVYSTLD 649
>gi|366086836|ref|ZP_09453321.1| DNA gyrase subunit B [Lactobacillus zeae KCTC 3804]
Length = 653
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/507 (46%), Positives = 329/507 (64%), Gaps = 9/507 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ + RGK V TL V+ + GT++ F PD +FT FD + RIRELAF
Sbjct: 154 YYIDFVRGK-VNTL-MKVIGTAPEHEHGTKVHFQPDPDIFTETTTFDDKVLTTRIRELAF 211
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP--LHDVVGFRKDVDGIT 120
LN L + D ++ + + GGL+ YV +L T+KK L + + GIT
Sbjct: 212 LNKGLKLTF--TDKRAATHEKLVFHYEGGLKSYVDFL-TEKKENLLQEPIYVEGQDKGIT 268
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++ALQ+ +D Y T+L +AN+I T +GGTH G K +LTR +N ++S +KD D L
Sbjct: 269 VEVALQYTND-YHSTLLTFANNIHTYEGGTHETGFKTALTRVINDYARRSGALKDSDDPL 327
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ VREGLT ++SV+ P+P+FEGQTKT+LGN + R VVD++ ++ ++L HP
Sbjct: 328 SGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDARTVVDRTFSDHFNKFLMEHPADGKL 387
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K++ A KA LAAKRAR++ R+KS L S+LPGKLAD +S PE SE+FIVEGDSAGG
Sbjct: 388 IIDKAMLASKARLAAKRAREVTRKKSGLEISNLPGKLADNTSKDPEISELFIVEGDSAGG 447
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GR R QAILP+RGKILNVE+ + NEEI+ L A+G G G+DF RY
Sbjct: 448 SAKSGRSRLTQAILPIRGKILNVEKASMERILANEEIRTLFTAMGTGF-GQDFDITKARY 506
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK+II+TDADVDGAHIRTLLLT YRY + + D G +Y+ PPLY++ +GK ++Y D
Sbjct: 507 HKLIIMTDADVDGAHIRTLLLTLIYRYMRPVLDAGYVYIAQPPLYRLRQGKMMRYIDSDE 566
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+ + P + IQR+KGLGEM QLWETT++P+ R L ++ +DA EA+ +F
Sbjct: 567 ELQDILGQLPPSPKPDIQRYKGLGEMDASQLWETTMDPDTRRLLRVSPKDAEEADGIFEM 626
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMG V+ R++ I+ A V+ +++D+
Sbjct: 627 LMGDHVEPRRKFIEENAVFVDPNNIDV 653
>gi|282163382|ref|YP_003355767.1| DNA gyrase subunit B [Methanocella paludicola SANAE]
gi|282155696|dbj|BAI60784.1| DNA gyrase subunit B [Methanocella paludicola SANAE]
Length = 635
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 233/501 (46%), Positives = 338/501 (67%), Gaps = 15/501 (2%)
Query: 5 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 64
Q+Y RGKP V + + GT F PD +F T +F + + R+RELAFLN
Sbjct: 147 QEYVRGKP----KDEVHEIGTAIGTGTTTIFKPDPTIFETT-EFKYEILVNRLRELAFLN 201
Query: 65 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDL 123
+ I L D + + + GG+ ++VQ+LN K P+++ V+ F K D +++
Sbjct: 202 KGVKITL----MDARSGVSDTFHYEGGIVQFVQYLNEGKTPVNEKVIYFEKQKDTTDVEI 257
Query: 124 ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGE 183
A+Q+ +D YS+ +L +AN+I T +GGTH+ G +++LTR+ N KK+ +K D+ SGE
Sbjct: 258 AMQY-NDGYSEIVLAFANNIHTTEGGTHLSGFRSALTRSFNDYAKKNSLLKG-DMQFSGE 315
Query: 184 HVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILS 243
+REGLT IISV++ NP+FEGQTKT+LGN +V+ +V+ V E L ++LE +P I+
Sbjct: 316 DIREGLTAIISVKLTNPQFEGQTKTKLGNSDVQGIVNSLVGEGLDDFLEENPSEARKIID 375
Query: 244 KSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAK 303
K++ A +A AA++AR+L R+KSVL +++LPGKLADCS P + E+++VEGDSAGGSAK
Sbjct: 376 KAVQAFQAREAARKARELTRRKSVLENTTLPGKLADCSERDPSKCELYLVEGDSAGGSAK 435
Query: 304 QGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKI 363
QGR+R FQAILPLRGKILNVE+ + +EEI+ LI A+G V GEDF + RYHKI
Sbjct: 436 QGRNRLFQAILPLRGKILNVEKARLDRVLTSEEIRALITAMGTSV-GEDFVIDKARYHKI 494
Query: 364 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELK 423
I++TDADVDGAHIRTLLLTFF+RY K L + G +Y+ PPL++ ++GK+ +Y Y++ L
Sbjct: 495 ILMTDADVDGAHIRTLLLTFFFRYMKPLIEAGYVYIAQPPLFRAKKGKEERYAYNEEALA 554
Query: 424 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 483
+ N + ++ R+KGLGEM P QLW TT++P+ R + Q+ +EDA EA+ F+ LMG
Sbjct: 555 GILEEMGRNGV-AVNRYKGLGEMNPEQLWSTTMDPQTRTVLQVTMEDAVEADRTFTLLMG 613
Query: 484 ARVDTRKELI-QNAANLVNLD 503
+V+ R++ I QNA + NLD
Sbjct: 614 DKVEPRRDFIVQNAKFVRNLD 634
>gi|238922437|ref|YP_002935950.1| DNA gyrase, B subunit [Eubacterium rectale ATCC 33656]
gi|238874109|gb|ACR73816.1| DNA gyrase, B subunit [Eubacterium rectale ATCC 33656]
gi|291526542|emb|CBK92129.1| DNA gyrase subunit B [Eubacterium rectale DSM 17629]
gi|291529185|emb|CBK94771.1| DNA gyrase subunit B [Eubacterium rectale M104/1]
Length = 645
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 241/507 (47%), Positives = 341/507 (67%), Gaps = 15/507 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y RGK T T ++ + GT++ F PD ++F + +D++T+ R+RE AF
Sbjct: 147 YRQSYKRGK--TDDTVKIVGQCDESLHGTKVHFLPDPEIFEETV-YDYDTLKQRLRETAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFF--AGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGI 119
L L I L+ D +N ++ + F GG++E+V++LN K+ L+D V + + +G+
Sbjct: 204 LTKGLKITLK----DVRENSHHNHVFHYEGGIKEFVEYLNRGKEALYDEVIYCEGTQNGV 259
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++ALQ +D+++D+ + N++ T +GGTH+ G + +LT+T N+ ++ K +KD D +
Sbjct: 260 YVEVALQH-NDSFNDSTFSFVNNVITPEGGTHLAGFRNALTKTFNAYAREKKILKDSDPA 318
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+G+ +REGLT IIS+++ P+FEGQTK +LGN E R VD V E LT +LE +PDV
Sbjct: 319 LTGDDIREGLTAIISIKIEEPQFEGQTKQKLGNSEARGAVDAVVSEKLTYFLEQNPDVAK 378
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I KSL A +A AA++ARDL R+K+ L +LPGKLADCS P+ EIFIVEGDSAG
Sbjct: 379 NICEKSLLAQRAREAARKARDLTRRKTSLDGGTLPGKLADCSDKDPKNCEIFIVEGDSAG 438
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK R R QAILPLRGKILNVE+ +Y N EI+ +I A G G+ EDF LR
Sbjct: 439 GSAKTARSRATQAILPLRGKILNVEKARLDRIYDNAEIRAMITAFGTGIH-EDFDITKLR 497
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
Y KIII+TDADVDGAHI TL+LTF YR+ L EG +Y+ PPLYKVE+ K V Y YDD
Sbjct: 498 YDKIIIMTDADVDGAHIATLMLTFLYRFMPDLIKEGHVYLATPPLYKVEKNKGVWYAYDD 557
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI--EDAAEANVV 477
ELK++ + + IQR+KGLGEM QLWETT++P+ R+LKQ++I E+++E +V
Sbjct: 558 DELKQILNDIGRDNNNKIQRYKGLGEMDADQLWETTMDPDHRILKQVMIDGENSSELDVT 617
Query: 478 FSSLMGARVDTRKELIQ-NAANLVNLD 503
F++LMG +V+ RKE I+ NA + NLD
Sbjct: 618 FTTLMGDKVEPRKEFIEANAKYVTNLD 644
>gi|239616758|ref|YP_002940080.1| DNA gyrase, B subunit [Kosmotoga olearia TBF 19.5.1]
gi|239505589|gb|ACR79076.1| DNA gyrase, B subunit [Kosmotoga olearia TBF 19.5.1]
Length = 631
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 246/506 (48%), Positives = 341/506 (67%), Gaps = 27/506 (5%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGKP T + + D++G+ + F PD VFTT FD + + R +ELAF
Sbjct: 140 YRQRYERGKPTTPVEI----IGETDKRGSLVAFKPDSLVFTTT-DFDFDILESRFKELAF 194
Query: 63 LNPKLTIALRKEDSDPEKNQYNE---YFFAGGLEEYVQWLN-----TDKKPLHDVVGFRK 114
LNP++TI E +Y+E + F GG+ E+V++LN +K+P + + G
Sbjct: 195 LNPRVTIEF-------EDRRYDEKRVFHFEGGIVEFVKYLNRKKTAINKEPFY-IEGTYN 246
Query: 115 DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK 174
DV I LA+Q+ ++AY + +L + N+I+T++GGTH+ G K LT+ +N +K +K
Sbjct: 247 DV---KIQLAMQY-TNAYDENILTFVNNIKTVEGGTHLTGFKTVLTKMMNDYARKLNVLK 302
Query: 175 DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELH 234
DKD +L GE VREGLT ++SV V P+FEGQTK +LGN EV + V + +++ L E + H
Sbjct: 303 DKDPNLQGEDVREGLTAVLSVFVKEPQFEGQTKAKLGNEEVYEAVIKVLRDKLPEVFDYH 362
Query: 235 PDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVE 294
L +I+ K+L A KA +AAK+AR+++R+K+ L +++LPGKLADC+ST E +E+FIVE
Sbjct: 363 TKELKAIIIKALDAAKARVAAKKAREMIRRKNALENTTLPGKLADCTSTDLETTELFIVE 422
Query: 295 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 354
GDSAGGSAKQ RDR FQAILPLRGKILNVE+ + KNE+I N+I A+G G+ G+D K
Sbjct: 423 GDSAGGSAKQARDREFQAILPLRGKILNVEKSSFEKLLKNEQINNIIVAIGTGI-GDDCK 481
Query: 355 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
E LRY KIII+TDADVDGAHIRTLLLT FYRY L + G IY+ PLYKVE ++
Sbjct: 482 LENLRYGKIIIMTDADVDGAHIRTLLLTLFYRYMTPLINAGHIYIAQAPLYKVELNRKKY 541
Query: 415 YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
Y Y D EL++ + + SIQR+KGLGEM P QLWETT+NPE R L ++ +ED EA
Sbjct: 542 YFYSDEELEEFLKNNDGKKV-SIQRYKGLGEMNPDQLWETTMNPESRKLIKIEMEDVEEA 600
Query: 475 NVVFSSLMGARVDTRKELIQNAANLV 500
+ VF+ LMG+ V+ R+E I+ A ++
Sbjct: 601 DRVFTILMGSEVEERREFIERHALMI 626
>gi|402494030|ref|ZP_10840777.1| DNA gyrase subunit B [Aquimarina agarilytica ZC1]
Length = 645
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 228/511 (44%), Positives = 334/511 (65%), Gaps = 20/511 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSK---DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRE 59
+ Q+Y RGK V PV S D+ GT + F PD+ +F ++++++T+A R+RE
Sbjct: 144 WEQEYERGKAV-------YPVKSTGDTDKNGTIVTFLPDRSIFQQTVEYNYDTLASRMRE 196
Query: 60 LAFLNPKLTIALRKEDSDPEKNQY-NEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDV 116
LA+LN +TI L + EK ++ +E F + GL+E+V +L+ + P+ V+ +
Sbjct: 197 LAYLNKGITITLTDARNTDEKGEFISETFHSNEGLKEFVSFLDASRTPIIGHVIAMEGEK 256
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
+ I +++A+ + +D+Y++ + Y N+I T +GGTH+ G + LT TL S +
Sbjct: 257 NDIPVEVAMIY-NDSYAENLHSYVNNINTHEGGTHLSGFRRGLTSTLKKFADNSGLLDKL 315
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
++G+ REGLT IISV+V P+FEGQTKT+LGN EV V Q+V E L YLE +P
Sbjct: 316 KFEIAGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVTSAVSQAVSEMLENYLEENPA 375
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
+I+ K + A +A AAK+AR++V++K+V+ LPGKL+DCS T P E EIF+VEGD
Sbjct: 376 DAKTIIQKVILAAQARHAAKKAREMVQRKTVMSIGGLPGKLSDCSETDPAECEIFLVEGD 435
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SAGG+AKQGRDR FQAILPLRGKILNVE+ + +++NEEI+N+ ALG+ + E+ K
Sbjct: 436 SAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVSIGTEEDSKA 495
Query: 357 ----ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ 412
LRYHK++I+ DADVDG+HI TL+LTFF+RY K L ++G +Y+ PPLY V++G +
Sbjct: 496 LNLTKLRYHKVVIMCDADVDGSHIATLILTFFFRYMKELIEQGYVYIAAPPLYLVKKGAK 555
Query: 413 VQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
QY ++D + + + N+ IQR+KGLGEM QLW+TT+NPE R ++Q+ IE
Sbjct: 556 KQYAWNDDQRDLLVKEYGENS--KIQRYKGLGEMNAEQLWDTTMNPEFRTMRQVTIESMT 613
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ VFS LMG V R+E I+ A N+D
Sbjct: 614 EADRVFSMLMGDEVPPRREFIEKNAIYANID 644
>gi|333996461|ref|YP_004529074.1| DNA gyrase subunit B [Treponema azotonutricium ZAS-9]
gi|333737538|gb|AEF83487.1| DNA gyrase, B subunit [Treponema azotonutricium ZAS-9]
Length = 648
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 247/515 (47%), Positives = 342/515 (66%), Gaps = 21/515 (4%)
Query: 3 YHQKYSRG---KPVTTLTCHVLPVDSKDRQ-GTRIRFWPDKQVF-TTAIQFDHNTIAGRI 57
+ Q Y G P + VLP ++ GT IR+ D +F +T FD ++ R+
Sbjct: 140 HTQSYKIGIPDAPAHEIQPSVLPYAGAGKERGTVIRWKADTSIFESTTYNFD--ALSNRL 197
Query: 58 RELAFLNPKLTIALRKED-SDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGF 112
RELAFLN L I +R E S P + +E+ F GG++ +V++LN K L+ + G
Sbjct: 198 RELAFLNKGLKITIRDERLSTP---KVHEFKFEGGVQSFVEYLNQSKTVLYKDPIFIEGT 254
Query: 113 RKD-VDG-ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKS 170
R D DG I +++A+Q+ +D +++ M + N I T +GGTH+ G K++LTRTLN KKS
Sbjct: 255 RDDGKDGVIEVEVAIQY-NDGFNEIMYSFVNDINTREGGTHLVGFKSALTRTLNEYLKKS 313
Query: 171 KTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEY 230
K K + SLSG+ VREGLT ++SV+VPNP+FEGQTK +LGN EV+ +V+ V E L +
Sbjct: 314 KIAKKLEESLSGDDVREGLTAVLSVKVPNPQFEGQTKAKLGNSEVKGIVEALVNEQLELF 373
Query: 231 LELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEI 290
L+ HPDV+++IL KS+ A KA +AA++ARD R+K+ + S LPGKL+DCS P E+
Sbjct: 374 LDQHPDVINNILEKSVLAAKARIAARQARDATRRKNAMDSVGLPGKLSDCSEKDPAVCEL 433
Query: 291 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG 350
FIVEGDSAGGSAKQGR+R+FQAIL L GK+LNVE+ + NE++Q +I ++G G G
Sbjct: 434 FIVEGDSAGGSAKQGRNRQFQAILSLFGKMLNVEKTRIEKVVTNEKLQPIIASIGAGC-G 492
Query: 351 EDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG 410
+F +RYHKIII+ DADVDG+HIRTLLLTFFYRY L ++G +Y+ +PPLYK+ G
Sbjct: 493 VEFNVAKIRYHKIIIMADADVDGSHIRTLLLTFFYRYMTELIEKGHVYLAMPPLYKIPVG 552
Query: 411 KQVQYCYDDAELKKVKSSFPSNALY-SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIE 469
KQ Y YDDAE K+ +IQR+KGLGEM P QLW+TT++P +R + Q+ ++
Sbjct: 553 KQNFYAYDDAEKDKILGGLGKEIKKEAIQRYKGLGEMNPDQLWDTTMDPARRNIIQIHLD 612
Query: 470 DAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 503
DA EA +FS+LMG V R+E I +NA + NLD
Sbjct: 613 DAVEAERIFSTLMGEVVAPRREFIEENALAVSNLD 647
>gi|78185902|ref|YP_373945.1| DNA gyrase subunit B [Chlorobium luteolum DSM 273]
gi|78165804|gb|ABB22902.1| DNA gyrase subunit B [Chlorobium luteolum DSM 273]
Length = 644
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 235/507 (46%), Positives = 333/507 (65%), Gaps = 24/507 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG P V + + +GT+ F PD ++F +F + I R+RELAF
Sbjct: 148 WFQRYHRGVP----EADVKEIGTTTERGTKTTFMPDSEIFKVT-EFRKDIIIDRMRELAF 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQW-----LNTDKKPLHDVVGFRKDVD 117
LN L I ++ + + E + F GGL+E+V + LN K+P++ + D
Sbjct: 203 LNSNLKIVVQDIEGEQET-----FHFEGGLKEFVLFTDENRLNLIKEPIY----IYGEKD 253
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G +++AL++ +D+Y + + Y N+I T +GGTH+ G + +LTRTLN+ +K+ +K+
Sbjct: 254 GTIVEIALEY-NDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNAYAQKNDLLKNLK 312
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
++L+G+ +EGLT +ISV+V P+FEGQTKT+LGN E + +V+ + E L E+ E +P+V
Sbjct: 313 LALTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVESVLNEQLAEFAESNPNV 372
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
+ I+ K A + AA++A++L R+KSVL SS LPGKLADCS PE E++IVEGDS
Sbjct: 373 IKMIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSINDPEHCELYIVEGDS 432
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDR FQAILPL+GKILNVE+ M +NEEI+ +I ALG E+F E
Sbjct: 433 AGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILALGTNFGEEEFSAEK 492
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRY KIII+TDADVDGAHIRTLLLTFF+R+ ++L + G +Y+ PPLY V+ GK+ QY +
Sbjct: 493 LRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGKVYIAQPPLYLVKSGKEQQYAW 552
Query: 418 DDAELKKVKSSF----PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
DD E + S A IQR+KGLGEM P QLW TT++PE R L Q+ +E+A E
Sbjct: 553 DDDERNSISDSMKKMQKGKANVHIQRYKGLGEMNPEQLWGTTMDPEHRSLLQVSVENAME 612
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLV 500
A+ VFS+LMG +V+ R+E I+ A V
Sbjct: 613 ADKVFSTLMGDKVEPRREFIEKNARYV 639
>gi|421766841|ref|ZP_16203609.1| DNA gyrase subunit B [Lactococcus garvieae DCC43]
gi|407624637|gb|EKF51372.1| DNA gyrase subunit B [Lactococcus garvieae DCC43]
Length = 652
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/508 (45%), Positives = 336/508 (66%), Gaps = 14/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG L + D +GT + F PD +FT FD+ + R+RELAF
Sbjct: 151 YYQEYHRGVVGEDLAI----IGETDIRGTMVHFTPDPTIFTETQVFDYEKLVTRVRELAF 206
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E+N + + + GG++ YV ++N +K+ + D + + ++DGIT+
Sbjct: 207 LNRGLRISITDKREGQEEN-HAMFHYEGGIQSYVSFINENKEVIFDTPIYTEGELDGITV 265
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ Y T++ +AN+I T +GGTH +G + +LTR +N+ K K +KD + +L+
Sbjct: 266 EVAMQYTG-TYHSTIMSFANNINTHEGGTHEQGFRTALTRAINNYAKAQKLLKDNEENLT 324
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT +ISV+ PNP+FEGQTKT+LGN EV +V++ E L ++ +P V I
Sbjct: 325 GDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVTGIVNKLFSEALQTFMLENPQVAKKI 384
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P+++E+FIVEGDSAGGS
Sbjct: 385 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDPKQTELFIVEGDSAGGS 444
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G D+ RYH
Sbjct: 445 AKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADYDLSKARYH 503
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCY--- 417
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PP+Y ++ G + +Y
Sbjct: 504 KLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGIKVGSETKEYIQPGE 563
Query: 418 -DDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ ELK + A ++QR+KGLGEM QLWETT++PE R++ ++ +EDAAEA+
Sbjct: 564 NQERELKLALEKWSQGRAKPTVQRYKGLGEMDDHQLWETTMDPEARLMARVSVEDAAEAD 623
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A +D
Sbjct: 624 KIFDMLMGDRVEPRREFIEANAQYSTID 651
>gi|340618721|ref|YP_004737174.1| DNA gyrase subunit B [Zobellia galactanivorans]
gi|339733518|emb|CAZ96895.1| DNA gyrase, subunit B [Zobellia galactanivorans]
Length = 650
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 223/508 (43%), Positives = 335/508 (65%), Gaps = 14/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RGK + V + + +GT + F PD Q+F I++ + T+A R+REL+F
Sbjct: 149 WEQEYERGKALYP----VKSIGETEERGTMVTFHPDDQIFQQTIEYSYETLANRMRELSF 204
Query: 63 LNPKLTIALRKEDSDPEKNQY-NEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN +TI++ EK ++ +E F++ GL+E+V++L+ +++PL V+ + + I
Sbjct: 205 LNKGVTISITDRRQKDEKGEFLSETFYSDEGLKEFVKFLDGNREPLIQSVISMEGEKNDI 264
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+ + + +Y++ + Y N+I T +GGTH+ G + LT TL S ++
Sbjct: 265 PVEVAMIYNT-SYTENLHSYVNNINTHEGGTHLSGFRRGLTTTLKKYADASGMLEKLKFE 323
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+ G+ REGLT I+SV+V P+FEGQTKT+LGN EV V Q+V E L++YLE HPD
Sbjct: 324 VQGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNREVSSAVSQAVSEMLSDYLEEHPDDAK 383
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A +A AA +AR++V++K+V+ LPGKL+DCS P + E+F+VEGDSAG
Sbjct: 384 VIVQKVILAAQARHAATKAREMVQRKTVMSIGGLPGKLSDCSEQDPTQCEVFLVEGDSAG 443
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK---- 355
G+AK GRDR+FQAILPLRGKILNVE+ + +++NEEI+N+ ALG+ + ED K
Sbjct: 444 GTAKMGRDRKFQAILPLRGKILNVEKAMQHKVFENEEIKNIYTALGVTIGTEDDSKALNL 503
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
E LRYHK++I+ DADVDG+HI TL+LTFF+RY + L + G +Y+ PPLY V++G + +Y
Sbjct: 504 EKLRYHKVVIMCDADVDGSHIETLILTFFFRYMRELIEGGHVYIATPPLYLVKKGSKKRY 563
Query: 416 CYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ D E ++ S+ SIQR+KGLGEM QLW+TT+NPE R L+Q+ I++A E +
Sbjct: 564 AWSDKERDEIADSYSGGV--SIQRYKGLGEMNAEQLWDTTMNPEFRTLRQITIDNATETD 621
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
VFS LMG V R+E I+ A N+D
Sbjct: 622 RVFSMLMGDEVPPRREFIEKNAVYANID 649
>gi|257457903|ref|ZP_05623062.1| DNA gyrase, B subunit [Treponema vincentii ATCC 35580]
gi|257444616|gb|EEV19700.1| DNA gyrase, B subunit [Treponema vincentii ATCC 35580]
Length = 638
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/508 (45%), Positives = 335/508 (65%), Gaps = 14/508 (2%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
EY QK++ G+P+ +T ++GT IR+ D +FT ++ + +A R+REL
Sbjct: 139 FEYVQKFALGEPLGPVTKR----GETQKRGTTIRWTADPSIFTETTTYNFDVLAVRLREL 194
Query: 61 AFLNPKLTIALRKED-SDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDG 118
AFLN + I LR E S P++ + F GGL +V++LN K+ L + + F + +
Sbjct: 195 AFLNNTIKITLRDERLSTPKEVTFA---FDGGLSHFVRYLNESKQVLPKEPIYFEGEKND 251
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK---D 175
+ +++A+Q+ +D Y + +L + N I T +GGTH+EG K +LTR +N KK+ + +
Sbjct: 252 VVVEIAMQY-NDGYKENILSFVNDINTREGGTHLEGFKTALTRVMNEFLKKNAKLSKKME 310
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
K+ L GE VR GLT ++SV+VP P+FEGQTKT+LGN EVR +VD + E LT + E +P
Sbjct: 311 KEEKLMGEDVRAGLTAVLSVKVPEPQFEGQTKTKLGNSEVRSIVDTFINEKLTLFFEQNP 370
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
+D IL K++ A +AA++A++ R+KS L S LPGKLADCSS PE+ E++IVEG
Sbjct: 371 IEIDKILEKAVGEATARIAARKAKEATRRKSGLDSFGLPGKLADCSSKDPEKCEVYIVEG 430
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK 355
DSAGGSAK+GRD + QAILPL GK+LNVE+ + NE++Q +I LG G+ GEDF
Sbjct: 431 DSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLNNEKLQPIIATLGTGI-GEDFNL 489
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
+ +RYHKIII+ DADVDG+HIRTLLLTFF+RY L + G +Y+ +PPLYK+ K+ Y
Sbjct: 490 DKIRYHKIIIMADADVDGSHIRTLLLTFFFRYMPELIEHGFVYLAMPPLYKISYNKKEWY 549
Query: 416 CYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
YDD+E + + + ++QR+KGLGEM QLWETT++P +R + ++ + DA EA+
Sbjct: 550 VYDDSERDSILNEIGRSVSPAVQRYKGLGEMDGTQLWETTMDPARRKMMRVTLSDAVEAD 609
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+FS+LMG V+ R++ I+ A NLD
Sbjct: 610 RIFSTLMGEEVEPRRKFIEENAVYANLD 637
>gi|365901961|ref|ZP_09439784.1| DNA gyrase subunit B [Lactobacillus malefermentans KCTC 3548]
Length = 648
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/477 (48%), Positives = 316/477 (66%), Gaps = 6/477 (1%)
Query: 29 QGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF 88
GT + F PD +F FD NT+ RIRELAFLN L I +R D PE+ ++ +
Sbjct: 175 HGTTVHFVPDPDIFRETTTFDINTLTTRIRELAFLNKGLQITIR--DERPEEPTEQDFLY 232
Query: 89 AGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTID 147
GGL YV++LN +K L + V GIT+++A+Q+ D +S+ +L + N+I T +
Sbjct: 233 EGGLRHYVEYLNKNKTTLFPEPVYVEGKEKGITVEVAMQYTDDFHSN-LLTFTNNIHTYE 291
Query: 148 GGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTK 207
GGTH EG K +LTR +N K +K+ + +L+GE VREG+T ++S++ P+P+FEGQTK
Sbjct: 292 GGTHEEGFKRALTRVVNDYAHKKGLLKENEDNLTGEDVREGMTAVLSIKHPDPQFEGQTK 351
Query: 208 TRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSV 267
T+LGN + R V D EYL +YL +P V I+ K A KA +AAKRAR++ R+KS
Sbjct: 352 TKLGNSDARTVTDHLFSEYLMDYLMENPTVGKIIVDKGSLASKARVAAKRAREVTRKKSG 411
Query: 268 LRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKD 327
L S+LPGKLA+ SS P SE+FIVEGDSAGGSAKQGR R QAILP+RGKILNVE+
Sbjct: 412 LEISNLPGKLANNSSKDPAISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKAS 471
Query: 328 EAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRY 387
+ NEEI++L A+G G G++F YHK+II+TDADVDGAHIRTLLLT FYRY
Sbjct: 472 MDRILANEEIRSLFTAMGTGF-GDEFDVSKANYHKLIIMTDADVDGAHIRTLLLTLFYRY 530
Query: 388 QKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMM 447
+ L + G +Y+ PPLY++ +GK +Y D EL++V P + +IQR+KGLGEM
Sbjct: 531 MRPLVEAGYVYIAQPPLYRIRQGKMQRYIDSDEELQEVLGQLPPSPKPAIQRYKGLGEMD 590
Query: 448 PVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV-NLD 503
QLWETT++PE R L ++ EDA +A+ V S LMG +V+ R++ I+ A V NLD
Sbjct: 591 AEQLWETTMDPENRRLLRVDSEDAIQADQVLSMLMGDKVEPRRKFIEENAKFVQNLD 647
>gi|386578337|ref|YP_006074743.1| DNA gyrase subunit B [Streptococcus suis GZ1]
gi|292558800|gb|ADE31801.1| DNA gyrase, B subunit [Streptococcus suis GZ1]
Length = 650
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/513 (44%), Positives = 333/513 (64%), Gaps = 25/513 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG+ V L V DR GT + F PD ++FT +FD + RI+ELAF
Sbjct: 150 YFQEYKRGEVVADLEV----VGETDRSGTTVHFTPDPEIFTETTEFDFAKLNKRIQELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L +++ + E Q EY + GG+ YV++LN +K + + + + ++D IT+
Sbjct: 206 LNRGLNLSITDKREGVE--QTKEYHYEGGIASYVEYLNENKDVIFETPIYTEGEMDDITV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + +Y + ++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 264 EVAMQYTT-SYHENVVSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ P P+FEGQTKT+LGN EV K+ ++ + E+L +P + I
Sbjct: 323 GEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVKITNRLFSDAFAEFLLENPQIARRI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGS
Sbjct: 383 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDAAKTELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR+FQAILP+RGKILNV++ + NEEI++L A+G G G DF RY
Sbjct: 443 AKSGRDRKFQAILPIRGKILNVKKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-------- 413
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PP+Y ++ G ++
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGIKVGSEIKEYIQPGV 561
Query: 414 ---QYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED 470
Q D E S P +IQR+KGLGEM QLWETT+NPE R++ ++ ++D
Sbjct: 562 NQEQELQDALERHSTGRSKP-----TIQRYKGLGEMDDHQLWETTMNPENRLMARVSVDD 616
Query: 471 AAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AAEA+ +F LMG +V+ R+E I+ A LD
Sbjct: 617 AAEADKIFDMLMGDKVEPRREFIEENAVYSTLD 649
>gi|331092116|ref|ZP_08340947.1| DNA gyrase subunit B [Lachnospiraceae bacterium 2_1_46FAA]
gi|330402317|gb|EGG81888.1| DNA gyrase subunit B [Lachnospiraceae bacterium 2_1_46FAA]
Length = 638
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 240/505 (47%), Positives = 334/505 (66%), Gaps = 11/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG + L V ++ GT++ F PDK++F I FD++T+ R RE+AF
Sbjct: 140 YKQRYERGHVMYKL--EVTGTCEPEKTGTKVTFLPDKEIFEETI-FDYDTLKQRFREMAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L L I L D PE+ + + GG++E+V +LN K PL++ ++ + DG+ +
Sbjct: 197 LTRNLKIIL--ADERPEERIEKTFHYEGGIKEFVSYLNKSKTPLYEQIIYCEGEKDGVAV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q +D+YSD G+ N+I T +GGTHI G + +LT+T N +K+K +KD + +LS
Sbjct: 255 EVAMQH-NDSYSDNTYGFVNNITTPEGGTHIVGFRNALTKTFNDYARKNKLLKDSEPNLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT I+SV++ +P+FEGQTK +LGN E R VD V L +LE +P V
Sbjct: 314 GEDIREGLTAIVSVKIGDPQFEGQTKQKLGNSEARGAVDNIVSTQLQIFLEQNPSVAKMT 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KS+ A +A AA++ARDL R+KS L + SLPGKLADCS P EI+IVEGDSAGGS
Sbjct: 374 VEKSVMAQRAREAARKARDLTRRKSALETMSLPGKLADCSDKDPANCEIYIVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK RDR QAILPLRGKILNVE+ +Y N EI+ +I A G G+ +DF LRYH
Sbjct: 434 AKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGIH-DDFDISKLRYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TLLLTF YR+ L EG +Y+ PPLYK+E+ K+V Y Y D E
Sbjct: 493 KIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYKLEKNKKVWYAYSDDE 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI--EDAAEANVVFS 479
L ++ + + IQR+KGLGEM QLWETT++PE R+L ++ + E ++E ++ F+
Sbjct: 553 LNQILTEVGRDGNNKIQRYKGLGEMDAEQLWETTMSPEHRVLLRVTMDEETSSELDLTFT 612
Query: 480 SLMGARVDTRKELI-QNAANLVNLD 503
+LMG +V+ R+E I +NA + NLD
Sbjct: 613 TLMGDKVEPRREFIEENAKYVQNLD 637
>gi|345883105|ref|ZP_08834553.1| DNA gyrase, B subunit [Prevotella sp. C561]
gi|345044076|gb|EGW48124.1| DNA gyrase, B subunit [Prevotella sp. C561]
Length = 657
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 235/517 (45%), Positives = 343/517 (66%), Gaps = 22/517 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + V D+ GTR +FWPD +F+T + + + +A R+RELA+
Sbjct: 146 YQQEYEKGKPLYPVKV----VGETDKTGTRQQFWPDPDIFSTTV-YQWSIVARRMRELAY 200
Query: 63 LNPKLTIALRKEDSDPEKNQY-NEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN + I L DPE + E F A GL+E+V++++ ++ L D V+ + + I
Sbjct: 201 LNAGIKITLTDLRPDPETGKTRTEVFHAKDGLKEFVRYVDRHRQHLFDDVIYLKTEKQNI 260
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKD 175
I++A+ + +D Y++ + Y N+I TI+GGTH++G +A+LTRTL + SK ++
Sbjct: 261 PIEVAVMYNTD-YTENIHSYVNNINTIEGGTHLQGFRAALTRTLKAYADNDPQISKQLEK 319
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
I ++GE REGLT +IS++V P+FEGQTKT+LGN EV V Q+V E LT+YLE HP
Sbjct: 320 AKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVAGAVQQAVGEALTDYLEEHP 379
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
+ I +K + A A +AA++AR+ V++K+V+ LPGKLADCS+ P++ EIF+VEG
Sbjct: 380 NEAKMICNKVILAATARVAARKARESVQRKNVMSGGGLPGKLADCSNKDPKDCEIFLVEG 439
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGE-D 352
DSAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV+GE D
Sbjct: 440 DSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEAESVMNIIQSIGVRFGVEGEGD 499
Query: 353 FKK--EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG 410
F+ + LRY KIII+TDADVDG+HI TL++T FYRY + + G +Y+ PPLYK
Sbjct: 500 FEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMPKVIEHGHLYIATPPLYKCTYK 559
Query: 411 KQVQYCYDD----AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQL 466
K +YCY + A + K + + QR+KGLGEM P QLWETT++P+ R+LKQ+
Sbjct: 560 KVSEYCYTEQQRQAFIDKYANGDEEDKAIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQV 619
Query: 467 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
IE+AA+A+ +FS LMG V+ R+E I+ A N+D
Sbjct: 620 TIENAADADEIFSMLMGDDVEPRREFIEKNATYANID 656
>gi|389857036|ref|YP_006359279.1| DNA gyrase subunit B [Streptococcus suis ST1]
gi|353740754|gb|AER21761.1| DNA gyrase subunit B [Streptococcus suis ST1]
Length = 650
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/513 (45%), Positives = 332/513 (64%), Gaps = 25/513 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RG+ V L V DR GT + F PD ++FT +FD + RI+ELAF
Sbjct: 150 YFQEYKRGEVVADLEV----VGETDRSGTTVHFTPDPEIFTETTEFDFAKLNKRIQELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L +++ + E Q EY + GG+ YV++LN +K + + + + ++D IT+
Sbjct: 206 LNRGLNLSITDKREGVE--QTKEYHYEGGIASYVEYLNENKDVIFETPIYTEGEMDDITV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + +Y + ++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +L+
Sbjct: 264 EVAMQYTT-SYHENVVSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ P P+FEGQTKT+LGN EV K+ ++ + E+L +P + I
Sbjct: 323 GEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVKITNRLFSDAFAEFLLENPQIARRI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGS
Sbjct: 383 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSDDATKTELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 443 AKSGRDREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-------- 413
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PP+Y ++ G ++
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGIKVGSEIKEYIQPGV 561
Query: 414 ---QYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED 470
Q D E S P +IQR+KGLGEM QLWETT+NPE R++ ++ ++D
Sbjct: 562 NQEQELQDALERHSTGRSKP-----TIQRYKGLGEMDDHQLWETTMNPENRLMARVSVDD 616
Query: 471 AAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AAEA+ +F LMG +V+ R+E I+ A LD
Sbjct: 617 AAEADKIFDMLMGDKVEPRREFIEENAVYSTLD 649
>gi|319952084|ref|YP_004163351.1| DNA gyrase subunit b [Cellulophaga algicola DSM 14237]
gi|319420744|gb|ADV47853.1| DNA gyrase subunit B [Cellulophaga algicola DSM 14237]
Length = 653
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 223/510 (43%), Positives = 338/510 (66%), Gaps = 16/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GK + V + + +GT + F+PD+ +FT ++F+++T+A R+REL++
Sbjct: 150 YEQEYQKGKALYP----VKSIGETEIRGTEVTFYPDETIFTQTVEFNYDTLANRMRELSY 205
Query: 63 LNPKLTIAL---RKEDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDVD 117
LN ++I + R++D D + E F++ GL+E++++L+ +++PL V+ + +
Sbjct: 206 LNKGVSITMTDKRQKDKDTPSGFHEERFYSEEGLKEFIKFLDGNREPLIKGVISMEGEKN 265
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
GI +++A+ + + +Y++ + Y N+I T +GGTH+ G + LT TL S ++
Sbjct: 266 GIPVEVAMVYNT-SYTENLHSYVNNINTHEGGTHLSGFRRGLTSTLKKYADASGMLEKLK 324
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+ G+ REGLT IISV+V P+FEGQTKT+LGN EV V Q+V E L++YLE +P+
Sbjct: 325 FEIQGDDFREGLTAIISVKVGEPQFEGQTKTKLGNREVSAAVSQAVSEMLSDYLEENPED 384
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K + A A AA +AR++V++K+V+ LPGKL+DCS P E+F+VEGDS
Sbjct: 385 AKIIVQKVVLAATARHAATKAREMVQRKTVMSIGGLPGKLSDCSDQDPVNCEVFLVEGDS 444
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGED----F 353
AGG+AKQGRDR FQAILPLRGKILNVE+ +++NEEI+N+ ALG+ + E+
Sbjct: 445 AGGTAKQGRDRMFQAILPLRGKILNVEKAMRHRVFENEEIKNIYTALGVSIGTEEDSQAL 504
Query: 354 KKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV 413
E LRYHK++I+ DADVDG+HI TL+LTFF+RY + L + G +Y+ PPLY V++G +
Sbjct: 505 NLEKLRYHKVVIMCDADVDGSHIETLILTFFFRYMRELVEAGHVYIATPPLYLVKKGAKK 564
Query: 414 QYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
+Y ++D E ++ SF N IQR+KGLGEM QLW+TT+NPE R L+Q+VIE+A E
Sbjct: 565 RYAWNDKERDEIAESF--NGSVGIQRYKGLGEMNAEQLWDTTMNPEFRTLRQVVIENATE 622
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
+ VFS LMG V R+E I+ A N+D
Sbjct: 623 TDRVFSMLMGDEVPPRREFIEKNAVYANID 652
>gi|241895511|ref|ZP_04782807.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
ATCC 33313]
gi|241871257|gb|EER75008.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
ATCC 33313]
Length = 648
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/507 (45%), Positives = 333/507 (65%), Gaps = 16/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKD-RQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+ + RG T + H + +D K +GT + F PD +F FD+ T+ R+RELA
Sbjct: 151 FAMDFERGHVKTEM--HEIAIDDKPVSRGTIVHFAPDPDIFRETTVFDYKTLMNRVRELA 208
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK-----KPLHDVVGFRKDV 116
FLN L I++ D PE+ + + GG++EYV +LN +K +P++ V G D+
Sbjct: 209 FLNKGLRISIT--DMRPEEPVVESFHYEGGIKEYVDFLNVNKDVIFNEPIY-VEGMENDI 265
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
D ++++LQ+ D +S+ +L + N+I T +GGTH G K++LTR +N +K+K +KD
Sbjct: 266 D---VEVSLQYTDDFHSN-LLSFTNNIHTYEGGTHETGFKSALTRVINDYARKNKILKDN 321
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
D LSG+ VREGLT I+SV+ P+P+FEGQTKT+LGN + R VD+ E ++ +P
Sbjct: 322 DDPLSGDDVREGLTAIVSVKHPDPQFEGQTKTKLGNSDARTAVDRMFSETFARFMMENPT 381
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
I+ K + A KA +AAKRAR+ R+KS L ++LPGKLAD +S PE SE+FIVEGD
Sbjct: 382 TAKQIVEKGILAGKARMAAKRAREATRKKSGLEIANLPGKLADNTSKDPEISELFIVEGD 441
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SAGGSAKQGR+R QAILP+RGKILNVE+ + N+EI++L A+G G G DF
Sbjct: 442 SAGGSAKQGRERLTQAILPIRGKILNVEKASMEKILGNDEIRSLFTAMGTGF-GTDFDVT 500
Query: 357 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 416
+YHK+II+TDADVDGAHIRTLLLT YRY + L + G +Y+ PPLY+V +GK ++Y
Sbjct: 501 KAKYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPLLEAGYVYIAQPPLYQVRQGKFIKYL 560
Query: 417 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
D+EL+ + + P++ IQR+KGLGEM QLWETT++P R L ++ ++DA EA++
Sbjct: 561 DADSELEALLPTLPASPKPIIQRYKGLGEMDASQLWETTMDPSVRRLLRVEMDDAIEADM 620
Query: 477 VFSSLMGARVDTRKELIQNAANLVNLD 503
+FS LMG +V+ R++ I+ A LD
Sbjct: 621 IFSMLMGDKVEPRRKFIEENAQYAELD 647
>gi|189499015|ref|YP_001958485.1| DNA gyrase subunit B [Chlorobium phaeobacteroides BS1]
gi|189494456|gb|ACE03004.1| DNA gyrase, B subunit [Chlorobium phaeobacteroides BS1]
Length = 644
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/503 (45%), Positives = 330/503 (65%), Gaps = 16/503 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y +G P + + + GT+ F PD +F +F + + R+RELAF
Sbjct: 148 WFQRYHKGIPQRDVEV----IGESTKTGTKTTFMPDPDIFKIT-EFRKDIVVDRMRELAF 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK-KPLHDVVGFRKDVDGITI 121
LN L I ++ D E + + GG++E+V + + ++ L + V + D +
Sbjct: 203 LNNILKIVVKDIDGSEET-----FHYEGGIKEFVTFTDHNRISLLKEPVYISGERDSTVV 257
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y + + Y N+I T +GGTH+ G + +LTRTLNS +K+ +K+ +SL+
Sbjct: 258 EIALQY-NDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNSYAQKNDLLKNLKLSLT 316
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +EGLT IISV+V P+FEGQTKT+LGN E + +V+ V E L+++ E +P VL +I
Sbjct: 317 GDDFKEGLTAIISVKVAEPQFEGQTKTKLGNSETQSIVESIVNEQLSDFAESNPGVLKTI 376
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K SA + AA++A+DL R+KS L SS LPGKLADCS PE E++IVEGDSAGGS
Sbjct: 377 IEKVKSAALSRDAARKAKDLTRRKSALESSGLPGKLADCSINDPEHCELYIVEGDSAGGS 436
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPL+GKILNVE+ M +NEEI+ +I ALG E+F E LRY
Sbjct: 437 AKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILALGTSFGEEEFSVEKLRYG 496
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFF+RY ++L + G +++ PPLY ++ GK+ +Y +DD E
Sbjct: 497 KIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVFIAQPPLYLIKSGKEQKYAWDDDE 556
Query: 422 ----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 477
++ ++ +IQR+KGLGEM P QLW TT++PE R L Q+ +E+A EA+ V
Sbjct: 557 RNGIVESIRKKQKGRGNINIQRYKGLGEMNPEQLWSTTMDPEHRSLLQVSVENAMEADQV 616
Query: 478 FSSLMGARVDTRKELIQNAANLV 500
FS+LMG +V+ R+ I+ A V
Sbjct: 617 FSTLMGDKVEPRRNFIEKNARYV 639
>gi|420145137|ref|ZP_14652612.1| DNA gyrase subunit B [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398403286|gb|EJN56544.1| DNA gyrase subunit B [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 637
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/503 (46%), Positives = 328/503 (65%), Gaps = 8/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ + RGK T L + + GT +RFWPD +F +D + RIRELAF
Sbjct: 140 YYMDFKRGKVATQLKE--IGTAPEHEHGTIVRFWPDPDIFQETTVYDIKILTTRIRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVD-GITI 121
LN L I ++ D E+ E+ + GG++ YV++L+ K+ L + + V+ GIT+
Sbjct: 198 LNKGLRITIK--DLRGEEPSKQEFHYEGGIKSYVEFLDNGKQDLFPEPIYVEGVEKGITV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ D Y ++ + N+I T +GGTH G K +LTR +N K+ +K+ + +LS
Sbjct: 256 EVALQYTED-YHTNLMTFTNNIHTYEGGTHEAGFKTALTRVINDYAHKNGLMKENEGNLS 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG+T ++S++ P+P+FEGQTKT+LGN + R V D + E + YL +P + +
Sbjct: 315 GEDVREGMTAVVSIKHPDPQFEGQTKTKLGNSDARTVTDHTFAETFSRYLMENPKIARQV 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A KA LAAKRAR++ R+KS L S+LPGKLAD SS PE SE+FIVEGDSAGGS
Sbjct: 375 VDKGLLASKARLAAKRAREVTRKKSGLEISNLPGKLADNSSKDPEISELFIVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R QAILP+RGKILNVE+ + NEEI+ L A+G G G++F RYH
Sbjct: 435 AKQGRSRLTQAILPIRGKILNVEKASIDRILANEEIRTLFTAMGTGF-GDEFDLAKARYH 493
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLT FYR+ + + + G +Y+ PPLY+V +GK +Y D E
Sbjct: 494 KLIIMTDADVDGAHIRTLLLTLFYRFMRPVVEAGYVYIAQPPLYQVRQGKMQRYIDSDEE 553
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ + + IQR+KGLGEM QLWETT++P+ R L ++ + DA EA+ VFS L
Sbjct: 554 LEQILGTLQPSPKPVIQRYKGLGEMDASQLWETTMDPDYRRLLRVDVTDAKEADEVFSML 613
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +VD R++ I+ A+ V NLD
Sbjct: 614 MGDKVDPRRKFIEENAHYVENLD 636
>gi|222152812|ref|YP_002561989.1| DNA gyrase subunit B [Streptococcus uberis 0140J]
gi|222113625|emb|CAR41503.1| DNA gyrase subunit B [Streptococcus uberis 0140J]
Length = 650
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/508 (45%), Positives = 337/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q++ RG V LT + S D GT + F PD ++FT ++F+++ +A RI+ELAF
Sbjct: 150 HFQEFKRGVVVDDLTI----IGSTDLTGTTVHFTPDPEIFTETVEFNYDKLAKRIQELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E+N ++ + GG+ YV++LN K + + + ++DGI +
Sbjct: 206 LNRGLRISIADKRKGIEQNH--DFHYEGGISSYVEYLNEKKDVIIETPIYTDGEMDGIAV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y + ++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ D +L+
Sbjct: 264 EVAMQYTT-GYHENVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENDDNLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V I
Sbjct: 323 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGS
Sbjct: 383 VDKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDASQNELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 443 AKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GSDFDVTKARYQ 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCY--- 417
K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ QY
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGNEIKQYIQPGI 561
Query: 418 -DDAELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ EL++ + + S+QR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+
Sbjct: 562 NQETELQEALEKYSVGRSKPSVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEAD 621
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
VF LMG RV+ R+E I+ A LD
Sbjct: 622 KVFDMLMGDRVEPRREFIEENAVYSTLD 649
>gi|325288206|ref|YP_004264387.1| DNA gyrase subunit B [Syntrophobotulus glycolicus DSM 8271]
gi|324963607|gb|ADY54386.1| DNA gyrase subunit B [Syntrophobotulus glycolicus DSM 8271]
Length = 645
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 244/510 (47%), Positives = 340/510 (66%), Gaps = 23/510 (4%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
+ Y Q+YSRGKP+ L K R GT+I F PD Q+F I +D+ + R++EL
Sbjct: 151 IRYQQEYSRGKPLYDLKE---AGTYKGRTGTQISFKPDAQIFEDVI-YDYEVLEQRLKEL 206
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDK-----KPLHDVVGFRK 114
+FLN + IAL+ E + E F +GG+ +YV++LN +K KP++ F
Sbjct: 207 SFLNKNIGIALKDERTGA-----GELFKHSGGIVDYVKYLNRNKDAIQPKPIY----FEA 257
Query: 115 DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK 174
+ +++A Q+ +D YS+ + YAN+I T +GGTH G KA+LTR +N +K+ +K
Sbjct: 258 QKEENIVEIAFQY-NDGYSENIYSYANNINTTEGGTHEAGFKAALTRVINDYARKNNILK 316
Query: 175 DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELH 234
+ +LSGE VREGLT IISV+V P+FEGQTKT+LGN E+R +VD + + L+ + E +
Sbjct: 317 ANENNLSGEDVREGLTAIISVKVREPQFEGQTKTKLGNSEMRSIVDSILGDGLSTFCEEN 376
Query: 235 PDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVE 294
P V I+ K L A +A +AA++ARDL R+K+ L S+SLPGKLADC+ + EI++VE
Sbjct: 377 PSVAKKIVEKGLQATRARMAARKARDLTRRKNALDSTSLPGKLADCAWKEAQFCEIYLVE 436
Query: 295 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 354
GDSAGGSAKQGRD++FQAILPLRGKILNVE+ + NEEI+ +I A+G G+ +DF
Sbjct: 437 GDSAGGSAKQGRDQKFQAILPLRGKILNVEKARLDRILANEEIRAMITAMGTGIS-DDFN 495
Query: 355 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
E RY+KI+I+TDADVDG+HIR LLLTFFYRY K L + +Y+ PPL+++++GK++Q
Sbjct: 496 LEKARYNKIVIMTDADVDGSHIRILLLTFFYRYMKPLLENNYVYIAQPPLFQIKKGKEIQ 555
Query: 415 YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
Y Y D EL + + IQR+KGLGEM P QLWETT+NPE R + Q+ +EDA A
Sbjct: 556 YAYSDEELNHILEMIGRERV-EIQRYKGLGEMNPEQLWETTMNPETRTILQVKMEDARRA 614
Query: 475 NVVFSSLMGARVDTRKELIQN-AANLVNLD 503
+F+ MG +VD RKE IQ A ++ NLD
Sbjct: 615 EELFTIFMGDKVDPRKEYIQKYAKDVKNLD 644
>gi|341819953|emb|CCC56170.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella thailandensis
fsh4-2]
Length = 648
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/507 (45%), Positives = 331/507 (65%), Gaps = 16/507 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKD-RQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
Y + RG T + H + VD + +GT + F PD +F FD+ T+ R+RELA
Sbjct: 151 YAMDFERGHVKTGM--HTVAVDDEPVSRGTIVHFAPDPDIFRETTTFDYKTLMNRVRELA 208
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK-----KPLHDVVGFRKDV 116
FLN L I++ D PE+ + + GG++EYV +LN +K +P++ V G D+
Sbjct: 209 FLNKGLRISI--SDMRPEEPVVESFHYDGGIKEYVDFLNVNKDVIFNEPIY-VEGMENDI 265
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
D ++++LQ+ D +S+ +L + N+I T +GGTH G K++LTR +N +K+K +KD
Sbjct: 266 D---VEVSLQYTDDFHSN-LLSFTNNIHTYEGGTHETGFKSALTRVINDYARKNKLLKDS 321
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
D +LSG+ VREGLT I+SV+ P+P+FEGQTKT+LGN + R VD+ + ++ +P
Sbjct: 322 DDALSGDDVREGLTAIVSVKHPDPQFEGQTKTKLGNSDARTAVDRMFSDTFARFMMENPT 381
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
I+ K + A KA +AAKRAR+ R+KS L ++LPGKLAD +S PE SE+FIVEGD
Sbjct: 382 TAKQIVEKGILAGKARMAAKRAREATRKKSGLEIANLPGKLADNTSKDPEISELFIVEGD 441
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SAGGSAKQGR+R QAILP+RGKILNVE+ + N+EI++L A+G G GE F
Sbjct: 442 SAGGSAKQGRERLTQAILPIRGKILNVEKASMEKILANDEIRSLFTAMGTGFGGE-FDVT 500
Query: 357 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 416
+YHK+II+TDADVDGAHIRTLLLT YRY + L + G +Y+ PPLY+V +GK ++Y
Sbjct: 501 KAKYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPLLEAGYVYIAQPPLYQVRQGKIIKYL 560
Query: 417 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
D EL + + P+ IQR+KGLGEM QLWETT++P R L ++ ++DA EA++
Sbjct: 561 DSDEELDALLPTLPATPKPVIQRYKGLGEMDASQLWETTMDPSIRRLLRVEMDDAIEADM 620
Query: 477 VFSSLMGARVDTRKELIQNAANLVNLD 503
+FS LMG +V+ R++ I+ A LD
Sbjct: 621 IFSMLMGDKVEPRRKFIEENAQYAELD 647
>gi|153815427|ref|ZP_01968095.1| hypothetical protein RUMTOR_01662 [Ruminococcus torques ATCC 27756]
gi|317500889|ref|ZP_07959101.1| DNA gyrase subunit B [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089209|ref|ZP_08338111.1| DNA gyrase subunit B [Lachnospiraceae bacterium 3_1_46FAA]
gi|145847286|gb|EDK24204.1| DNA gyrase, B subunit [Ruminococcus torques ATCC 27756]
gi|316897769|gb|EFV19828.1| DNA gyrase subunit B [Lachnospiraceae bacterium 8_1_57FAA]
gi|330405761|gb|EGG85290.1| DNA gyrase subunit B [Lachnospiraceae bacterium 3_1_46FAA]
Length = 645
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 240/505 (47%), Positives = 339/505 (67%), Gaps = 11/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK V L V+ DR GT + F+PD ++F + FD++T+ R RE+AF
Sbjct: 147 YKQRYERGKVVYKL--KVVGECEPDRTGTTVTFFPDAEIFDDTV-FDYDTLKQRFREMAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
L L I LR D E+ + + + + GG++E+V +LN K PL++ + + + + DG+ +
Sbjct: 204 LTKGLKIVLR--DWRGEELREHTFHYEGGIKEFVTYLNKSKTPLYEQIIYCEGMKDGVAV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q +D+YS+ G+ N+I T +GGTHIEG + +LT+T N +K+K +KD + +LS
Sbjct: 262 EIAMQH-NDSYSENTYGFVNNITTPEGGTHIEGFRGALTKTFNDYARKNKLLKDSEPNLS 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT I+SV++ +P+FEGQTK +LGN E R V+ + L +LE +P V
Sbjct: 321 GDDIREGLTAIVSVKIEDPQFEGQTKQKLGNSEARGAVNSILSTQLEIFLEQNPSVAKIT 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KS+ A +A AA++ARDL R+KS L SLPGKLADCS P EI+IVEGDSAGGS
Sbjct: 381 VEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSDKDPVNCEIYIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK RDR QAILPLRGKILNVE+ +Y N EI+ +I A G G+ EDF LRYH
Sbjct: 441 AKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGIH-EDFDISKLRYH 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TLLLTF YR+ L EG +Y+ PPLYK+E+ K+V Y Y D E
Sbjct: 500 KIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYKLEKNKKVWYAYSDEE 559
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI--EDAAEANVVFS 479
L ++ + ++ IQR+KGLGEM QLWETT++PE R+L ++ + E ++E ++ F+
Sbjct: 560 LNQILTEVGRDSNNKIQRYKGLGEMDADQLWETTMDPEHRILLRVTMDEETSSELDLTFT 619
Query: 480 SLMGARVDTRKELI-QNAANLVNLD 503
+LMG +V+ R+E I +NA + NLD
Sbjct: 620 TLMGDKVEPRREFIEENAKYVKNLD 644
>gi|322370371|ref|ZP_08044930.1| DNA gyrase, B subunit [Haladaptatus paucihalophilus DX253]
gi|320550079|gb|EFW91734.1| DNA gyrase, B subunit [Haladaptatus paucihalophilus DX253]
Length = 638
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 244/497 (49%), Positives = 331/497 (66%), Gaps = 10/497 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q + RG P + V + + GT RFWPD ++F T F ++T+ R+RELAF
Sbjct: 142 WKQTFERGDPAGEME-RVRDMRDDEETGTYQRFWPDTEIFETT-DFTYSTLENRLRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L E D EK + + ++GG+ E+V++LN K LH+ V+ F + D I +
Sbjct: 200 LNSGVAITLADE-RDEEKG--DTFHYSGGIREFVEYLNETKTALHNEVIYFEDEDDNIQV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q +D ++ +AN+I T +GGTH+ G K +LTR +N + + D D +L
Sbjct: 257 EVAMQ-ATDELQGSIHAFANNINTREGGTHLTGFKTALTRVVNDYANDNDMLGDLDENLR 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT +ISV+ P+P+FEGQTKT+LGN EVR +V+ +V E L+ Y E HPD +I
Sbjct: 316 GEDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESAVHEGLSVYFEEHPDTAQAI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+SK++ A KA AAK+A +L R+KS L SS+LPGKLADC S P +SE+F+VEGDSAGGS
Sbjct: 376 ISKAVEAAKARKAAKKAEELTRRKSALESSALPGKLADCQSRDPTKSELFVVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQ RDR FQAILPL GK+LNVE+ + +NE+I+N I A+G GV GE+F + RYH
Sbjct: 436 AKQARDREFQAILPLFGKVLNVEKHRLDRVLENEKIRNFITAIGTGV-GEEFDIDDARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE-RGKQVQYCYDDA 420
KIII+TDADVDGAHIRTL LT YRY + L + G +Y PPLY+V RGK ++
Sbjct: 495 KIIIMTDADVDGAHIRTLYLTLLYRYMRPLLEAGYVYAAQPPLYRVRYRGKTYDAMTEEE 554
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+ ++ N +QRFKGLGEM P QLWETT+NPE R+LKQ+ IEDAA A+ +FS
Sbjct: 555 RDEIIEEKCDGNP-SQVQRFKGLGEMNPEQLWETTMNPENRILKQITIEDAAAADKMFSV 613
Query: 481 LMGARVDTRKELIQNAA 497
LMG V RK+ IQ+ A
Sbjct: 614 LMGDAVGPRKQFIQDHA 630
>gi|357237100|ref|ZP_09124443.1| DNA gyrase, B subunit [Streptococcus criceti HS-6]
gi|356885082|gb|EHI75282.1| DNA gyrase, B subunit [Streptococcus criceti HS-6]
Length = 650
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/508 (45%), Positives = 338/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG V L + D+ GT + F PD ++FT +FD + +A RI+ELAF
Sbjct: 150 HFQEYKRGLVVADLKV----IGDTDKTGTSVHFTPDPEIFTETTEFDFDKLAKRIQELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E++Q Y + GG+ YV +LN +K+ L D + ++DGI++
Sbjct: 206 LNKGLKISITDKREGKEQSQV--YHYEGGIVSYVDYLNENKEVLFDQPIYTDGEMDGISV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ Y + +L +AN+I T +GGTH +G + +LTR +N +++K +K+KD +LS
Sbjct: 264 EVAMQYTG-TYHENVLSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKLLKEKDDNLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IISV+ PNP+FEGQTKT+LGN EV K+ ++ E + +L +P + I
Sbjct: 323 GEDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSRFLLENPQIAKKI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGS
Sbjct: 383 VEKGVLASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDASQNELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + N+EI++L A+G G G +F RY
Sbjct: 443 AKSGRNREFQAILPIRGKILNVEKASMDKILANDEIRSLFTAMGTGF-GAEFDVSKARYQ 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT FYRY + + + G +Y+ PP+Y V+ G +V +Y A
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGVKVGSEVKEYIQPGA 561
Query: 421 ELK-KVKSSF----PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ + K++ + + S+QR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+
Sbjct: 562 DQETKLQEALDRYTQGRSKPSVQRYKGLGEMDDHQLWETTMDPEHRLMARVSVDDAAEAD 621
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG +V R+E I+ A LD
Sbjct: 622 KIFDMLMGDQVGPRREFIEENAVYSTLD 649
>gi|291561640|emb|CBL40439.1| DNA gyrase subunit B [butyrate-producing bacterium SS3/4]
Length = 636
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/504 (47%), Positives = 335/504 (66%), Gaps = 11/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK T ++ D+ GT++ F PDK +F + +D++T+ R+RE AF
Sbjct: 140 YKQRYERGK--TMYPLKIVGDCPSDKHGTKVTFLPDKTIFEETV-YDYDTLKIRLRETAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L L I LR + D ++ ++ + GG++E+V +LN PL+D V+ D + +
Sbjct: 197 LTKNLKIILRDDREDKKEKVFH---YEGGIKEFVTYLNRSNVPLYDNVIYCEGKKDNVLV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q +D+Y++ + + N+I T +GGTH+ G + +LT+T N G+K+K +KD + +L+
Sbjct: 254 EVAMQH-NDSYTENIYSFVNNINTPEGGTHLTGFRNALTKTFNDYGRKNKLLKDNEPALT 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT IISV++ P+FEGQTK +LGN E R VD V E LT +LE +P V +I
Sbjct: 313 GEDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGAVDSVVSEQLTYFLEQNPSVAKTI 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KS+ A +A AA++ARDL R+K+VL SLPGKLADCSS PEE EI+IVEGDSAGGS
Sbjct: 373 IEKSVLAQRARAAARKARDLTRRKTVLDGLSLPGKLADCSSKHPEECEIYIVEGDSAGGS 432
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK R++ QAILPLRGKILNVE+ +Y N EI+++I A G G+ EDF LRYH
Sbjct: 433 AKDARNKSTQAILPLRGKILNVEKARLDRIYGNAEIKSMITAFGTGIH-EDFDISKLRYH 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TLLLTF YR+ L +G +Y+ PPLYK+E+ K+V Y Y D E
Sbjct: 492 KIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYKIEKNKRVWYAYSDEE 551
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI--EDAAEANVVFS 479
L + + IQR+KGLGEM QLWETT++PE R+L ++ + E +E ++ F+
Sbjct: 552 LNNILKEIGRDQNNKIQRYKGLGEMDAEQLWETTMDPEHRVLLRVTMNEEMTSEIDLTFT 611
Query: 480 SLMGARVDTRKELIQNAANLVNLD 503
+LMG +V+ R+E I+ A LD
Sbjct: 612 TLMGDQVEPRREFIEQNAKYGTLD 635
>gi|291548764|emb|CBL25026.1| DNA gyrase subunit B [Ruminococcus torques L2-14]
Length = 644
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 242/508 (47%), Positives = 342/508 (67%), Gaps = 18/508 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVD---SKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRE 59
Y Q+Y RGK C+ L VD + +GT++ F PDK++F + FD+NT+ R RE
Sbjct: 147 YKQRYERGK-----VCYKLRVDRDCEPEMRGTKVTFLPDKEIFEETV-FDYNTLKQRFRE 200
Query: 60 LAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DG 118
+AFL L I LR D E+ + + + GG++E+V +LN K L++ + + + + D
Sbjct: 201 MAFLTKGLKIHLR--DLREEEIHEHIFHYEGGIKEFVTYLNKSKTALYEQIIYCEGMKDN 258
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+ +++A+Q +D+Y++T G+ N+I T +GGTHI G +++LT+ N GKK+K +K+ +
Sbjct: 259 VAVEVAMQH-NDSYNETTYGFVNNITTPEGGTHIAGFRSALTKVFNDYGKKNKLLKENE- 316
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
LSGE +REGLT I+SV++ +P+FEGQTK +LGN E R VD V+ L +LE +P V
Sbjct: 317 QLSGEDIREGLTAIVSVKIEDPQFEGQTKQKLGNSEARGAVDNIVRTQLEIFLEQNPSVA 376
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ KS+ A +A AA++ARDL R+KS L SLPGKLADCS P + EI+IVEGDSA
Sbjct: 377 KMIIEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSDKDPSKCEIYIVEGDSA 436
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAK RDR QAILPLRGKILNVE+ +Y N EI+ +I A G G+ EDF L
Sbjct: 437 GGSAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEIKAMITAFGTGIH-EDFDISKL 495
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHKIII+TDADVDGAHI TLLLTF YR+ L EG +Y+ PPLYK+E+ K+V Y Y
Sbjct: 496 RYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYKLEKNKKVWYAYS 555
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED--AAEANV 476
D EL ++ + ++ IQR+KGLGEM QLWETT++PE R+L ++ ++D ++E ++
Sbjct: 556 DDELNQILTEVGRDSNNKIQRYKGLGEMDAEQLWETTMDPEHRILLRVTMDDETSSELDL 615
Query: 477 VFSSLMGARVDTRKELI-QNAANLVNLD 503
F++LMG +V+ R+E I +NA + NLD
Sbjct: 616 TFTTLMGDKVEPRREFIEENAKYVQNLD 643
>gi|429736495|ref|ZP_19270391.1| DNA gyrase, B subunit [Selenomonas sp. oral taxon 138 str. F0429]
gi|429154931|gb|EKX97638.1| DNA gyrase, B subunit [Selenomonas sp. oral taxon 138 str. F0429]
Length = 685
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/499 (49%), Positives = 332/499 (66%), Gaps = 12/499 (2%)
Query: 7 YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPK 66
++RG VT H + + + GTR+ F PD ++FT + T+ R+RELAFLN
Sbjct: 196 FARG--VTQKKLHT--IGTCETTGTRVHFVPDPEIFTVT-TYSFETLKHRLRELAFLNHG 250
Query: 67 LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLAL 125
+TI L D E+ + + F GG+ +V LN K+ +++ + F D +++A+
Sbjct: 251 ITITLV--DERGEEERRETFHFDGGIRSFVAHLNRKKETINEEPIYFNGVKDDTVVEIAM 308
Query: 126 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 185
Q+ +D+Y + + + N+I T +GGTH+ G K +LTR N ++ +KDKD +LSGE V
Sbjct: 309 QY-NDSYQENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARRLNVLKDKDGNLSGEDV 367
Query: 186 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 245
REGLTC+IS++V P+FEGQTKT+LGN EVR +VD V E L EY E +P V +L K+
Sbjct: 368 REGLTCVISLKVREPQFEGQTKTKLGNSEVRGIVDSIVTEGLMEYFEENPAVTKRVLDKA 427
Query: 246 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 305
L A +A AA++AR+L R+K+ L SSLPGKLADCS P++ EI+IVEGDSAGGSAKQG
Sbjct: 428 LMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPDQCEIYIVEGDSAGGSAKQG 487
Query: 306 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 365
RDRRFQAILPLRGKILNVE+ ++ N EI+ +I A G G+ GE+F RY KIII
Sbjct: 488 RDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGI-GEEFDLAKRRYSKIII 546
Query: 366 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 425
+TDADVDGAHIRTLLLTFFYRY K L D G +Y+ PPLY++ + K+ Y Y D E K
Sbjct: 547 MTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVYIAQPPLYQIRKEKKHFYTYSDEEQAKK 606
Query: 426 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 485
+ + +IQR+KGLGEM P QLWETT+NPE R + Q+ EDA A+ +F+ LMG +
Sbjct: 607 LDEIGRDGV-TIQRYKGLGEMNPEQLWETTMNPEGRTMLQVGAEDAEAADELFTILMGDK 665
Query: 486 VDTRKELIQNAANLV-NLD 503
V+ R++ I+ A LV NLD
Sbjct: 666 VEPRRQFIEENARLVRNLD 684
>gi|417787827|ref|ZP_12435510.1| DNA gyrase subunit B [Lactobacillus salivarius NIAS840]
gi|334308004|gb|EGL98990.1| DNA gyrase subunit B [Lactobacillus salivarius NIAS840]
Length = 652
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 242/506 (47%), Positives = 333/506 (65%), Gaps = 9/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y + GK T +T V+ + GT + F PD +FT +D N + RIRELAF
Sbjct: 155 YGMDFKLGKVATAMT--VVGKCPRHEHGTIVHFKPDPDIFTETTTYDINVLTKRIRELAF 212
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L I + +D E+ + E+ +AGG++ Y+++LN K+ + + + + +GI +
Sbjct: 213 LNKGLKITI--DDKRQEEPTHEEFHYAGGIKHYIEFLNKGKEVIFPEPIYVEGEQNGIMV 270
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D +S+ +L + N+I T +GGTH G K +LTR +N G+KS +K+ D +LS
Sbjct: 271 EVALQYTNDFHSN-LLSFTNNIHTYEGGTHESGFKTALTRVINDYGRKSGLIKENDANLS 329
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT ++S++ PNP+FEGQTKT+LGN + RKV D+ E +++ +P V I
Sbjct: 330 GEDVREGLTAVVSIKHPNPQFEGQTKTKLGNSDARKVTDKLFSETFNKFMLENPTVAKQI 389
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A KA +AAKRAR++ R+K+ L S+LPGKLAD +S PE SE+FIVEGDSAGGS
Sbjct: 390 VEKGLLAAKARIAAKRAREVTRKKNGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGS 449
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R QAILP+RGKILNVE+ + NEEI++L ALG G GE+F YH
Sbjct: 450 AKQGRSRLTQAILPIRGKILNVEKATIDRILANEEIRSLFTALGTGF-GEEFDVSKANYH 508
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLT YR+ K + D G +Y+ PPLY+V +GK ++Y D E
Sbjct: 509 KLIIMTDADVDGAHIRTLLLTLIYRFMKPMLDAGYVYIAQPPLYQVRQGKMIKYIDSDEE 568
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L V S P + IQR+KGLGEM QLWETT+NPE R L ++ + DA EAN VF L
Sbjct: 569 LNDVLGSLPPSPKPVIQRYKGLGEMDAEQLWETTMNPENRRLLRVELSDAEEANEVFEML 628
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG V R++ I++ A VN +LD+
Sbjct: 629 MGDHVGPRRQFIEDNATFVN--NLDV 652
>gi|448329984|ref|ZP_21519278.1| DNA gyrase subunit B [Natrinema versiforme JCM 10478]
gi|445613172|gb|ELY66882.1| DNA gyrase subunit B [Natrinema versiforme JCM 10478]
Length = 643
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/498 (46%), Positives = 336/498 (67%), Gaps = 7/498 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ + G+PV + V ++ + GT+IRFWPD +F T + +T++ R+RELAF
Sbjct: 142 FRHAFEAGEPVGDME-RVRDMEPDEETGTQIRFWPDTGIFETG-EISFSTLSNRLRELAF 199
Query: 63 LNPKLTIALRKE--DSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGI 119
LN + I LR E D+D ++ Y + GG+ E+V++LN + +H D++ F + I
Sbjct: 200 LNSGVRITLRDERVDTDDDEPVAETYEYDGGIREFVEYLNETRSAMHEDIIYFEDEEQNI 259
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I++A+Q ++ ++ +AN+I T +GGTH+ G K +LTRT+N ++ + D D +
Sbjct: 260 QIEVAMQ-ATEELQGSIHAFANNINTREGGTHLTGFKTALTRTVNDYANENDLLSDLDNN 318
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSGE +REGLT +IS++ P+P+FEGQTKT+LGN EVR +V+ ++ E L Y E HPD
Sbjct: 319 LSGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIVESAMHEGLGTYFEEHPDTAQ 378
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K++ A KA +AAK+A +L R+KS L S+SLPGKLADC + PEE+E+FI EGDSAG
Sbjct: 379 AIVMKAVEAAKARMAAKKAEELTRRKSALDSTSLPGKLADCQTKEPEEAELFIAEGDSAG 438
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQ R+ FQAILP++GKILNVE+ + +N+EI+N+I A+G G+ G++F E +R
Sbjct: 439 GSAKQARNPEFQAILPIKGKILNVEKHRLDRILENDEIRNMITAIGAGI-GDEFDIEDVR 497
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
Y KII+ TDADVDGAHIRTLLLTFFYR+ + L + G +Y PPLY++ + +
Sbjct: 498 YKKIIMATDADVDGAHIRTLLLTFFYRHMRPLLEGGYVYATQPPLYRIRYRGETYDAMTE 557
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
AE ++ +QRFKGLGEM P QLW+TT++P+ R+LKQ+ IEDAA A+ +FS
Sbjct: 558 AERDQIVEEKCDGNPSQVQRFKGLGEMNPQQLWDTTMDPDNRILKQITIEDAAAADKMFS 617
Query: 480 SLMGARVDTRKELIQNAA 497
LMG V+ RK+ I++ A
Sbjct: 618 VLMGDAVEPRKQFIKDHA 635
>gi|306831763|ref|ZP_07464920.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|304426188|gb|EFM29303.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
Length = 650
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/510 (44%), Positives = 343/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V+ L + DR GT + F PD ++FT FD + +A RI+ELAF
Sbjct: 150 HYQEYRRGHVVSDLAV----IGDTDRHGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAF 205
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I++ ++E + EK+ Y + GG+ YV+++N +K+ + + + ++DGI
Sbjct: 206 LNRGLRISITDKREGIEQEKH----YHYEGGISSYVEFINENKEVIFENPIYTDGELDGI 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + +Y +T++ +AN+I T +GGTH +G + +LTR +N +++K +K+KD +
Sbjct: 262 SVEVAMQYTT-SYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKLLKEKDDN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E + +L +P +
Sbjct: 321 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSRFLLENPQIAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS +E+FIVEGDSAG
Sbjct: 381 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDATMNELFIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GRDR QAILP+RGKILNVE+ + NEEI++L A+G G G +F R
Sbjct: 441 GSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GAEFDVSKAR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYD 418
YHK++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y
Sbjct: 500 YHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQP 559
Query: 419 DA----ELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
A EL++ + + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAE
Sbjct: 560 GANQEIELQEAMARHSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAE 619
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG RV+ R+E I+ A LD
Sbjct: 620 ADKIFDMLMGDRVEPRREFIEENAVYSTLD 649
>gi|384209248|ref|YP_005594968.1| D Gyrase B subunit [Brachyspira intermedia PWS/A]
gi|343386898|gb|AEM22388.1| D Gyrase B subunit [Brachyspira intermedia PWS/A]
Length = 636
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/504 (46%), Positives = 328/504 (65%), Gaps = 13/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y RG P V V + + GT + F D ++F T + +D+ +A R+RELAF
Sbjct: 142 YRQVYHRGIPEEP----VKEVGTSKKTGTTVTFKADDEIFETTV-YDYKILANRLRELAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L D + NE+++ GG+E ++ LN +KKPLHD + K+ D +
Sbjct: 197 LNRGIRITLV--DEREAEVVSNEFYYEGGIEMFIAHLNENKKPLHDKPIYLHKNEDKTDV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ DAY++ + Y N+I T +GGTH+ G + +LTR KK + K I+
Sbjct: 255 EVAMQYV-DAYNENIFTYCNNINTTEGGTHLVGFRTALTRVYTDFAKKLELDKKSKITFM 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGL ++SV++PNP+FEGQTKT+LGN EVR V ++ V E L +Y +P V+ +I
Sbjct: 314 GEDTREGLVAVVSVKIPNPQFEGQTKTKLGNTEVRAVTEKLVVEGLNDYFSQNPKVIKAI 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K +SA +A AA++ARDL R+K+ L S SLPGKLADCS ++ E+++VEGDSAGG+
Sbjct: 374 LEKIISAAQAREAARKARDLARRKNALESDSLPGKLADCSEQEVDKCEVYLVEGDSAGGT 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILPLRGK+LNVE+ + NE ++ +I ALG GV G F +RY
Sbjct: 434 AKGGRDRHFQAILPLRGKVLNVEKARLDKIIDNESLKPIIAALGCGV-GASFDISKIRYG 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ-VQYCYDDA 420
++II+ DAD+DG+HIRTLLLTFF+RY + L D G I++ VPPLYK+ K+ Y Y D
Sbjct: 493 RVIIMADADIDGSHIRTLLLTFFFRYMRPLIDLGHIFIAVPPLYKISFDKKNFVYAYSDE 552
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+ K+ + + Y IQR+KGLGEM QLWETT+NPE R++ Q++ EDA +A+ +FS
Sbjct: 553 QRDKILAE-NKDKKYDIQRYKGLGEMNADQLWETTMNPETRLMYQVLTEDAEKADQLFSM 611
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG V R++ I++ A V NLD
Sbjct: 612 LMGDEVKPRRDFIESNARYVKNLD 635
>gi|320159847|ref|YP_004173071.1| DNA gyrase subunit B [Anaerolinea thermophila UNI-1]
gi|319993700|dbj|BAJ62471.1| DNA gyrase subunit B [Anaerolinea thermophila UNI-1]
Length = 639
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 235/505 (46%), Positives = 338/505 (66%), Gaps = 14/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG PV + V+ + GT+ F D +F + + +T+ R RE+AF
Sbjct: 144 HFQRYERGVPVEPV--KVIGKCKPNETGTKTTFRFDPTIFKGDLDYKFDTLVQRFREMAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
+ K+TI L E + E + ++F GG+ +V++LN +++ LH VV K+V+G+ I+
Sbjct: 202 VTRKVTIRLIDERASREMS----FYFEGGITSFVRYLNRNREVLHPVVYAEKEVEGVGIE 257
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
A+Q+ +DAY++++ +AN+I TIDGGTH+ G++A++TR +N +++ +KD D + SG
Sbjct: 258 AAIQY-TDAYAESVYSFANTINTIDGGTHLTGLRAAITRVINDYARRNNFLKDGDPNFSG 316
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+ REGLT I+SV+ P+P+FE QTK +L NPEV+ V Q V E + +LE +P +I+
Sbjct: 317 DDTREGLTAIVSVKHPDPQFESQTKVKLMNPEVQTYVQQVVGEAFSTFLEENPQAAKAII 376
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K L++ +A AA++ARDLV +KS L S +LPGKLADCS P ++E++IVEGDSAGGSA
Sbjct: 377 QKCLTSARARDAARKARDLVIRKSTLESLTLPGKLADCSERDPSKTELYIVEGDSAGGSA 436
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQGRDR FQA+LPLRGKILN ER + N E++ LI ALG G+ G+ F LRY +
Sbjct: 437 KQGRDRHFQAVLPLRGKILNTERARLDKILSNNEVKALISALGTGI-GDSFDLSGLRYGR 495
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
+II+TDADVDG+HIRTLLLTFF+RY L ++G +++ PPLY++ QV+Y Y DA+
Sbjct: 496 VIIMTDADVDGSHIRTLLLTFFFRYMLPLIEDGHLFIAQPPLYRIAYKNQVRYAYTDADR 555
Query: 423 KKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
++ P A SIQR+KGLGEM P QLWETT+NPE R L + +EDAA A+ F
Sbjct: 556 DRILKELGITPEKA--SIQRYKGLGEMNPTQLWETTMNPENRTLLMVTVEDAAAADRTFD 613
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMGA V R + IQ +A ++ NLD
Sbjct: 614 MLMGAAVPPRTKFIQTHARDVRNLD 638
>gi|421452911|ref|ZP_15902267.1| DNA gyrase subunit B [Streptococcus salivarius K12]
gi|400181220|gb|EJO15487.1| DNA gyrase subunit B [Streptococcus salivarius K12]
Length = 650
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/508 (44%), Positives = 340/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG V L + ++ GT + F PD ++F +FD +A RI+ELAF
Sbjct: 150 HFQEYKRGVVVADLAV----IGETEKHGTTVHFTPDPEIFQETTEFDFGKLAKRIQELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ D Q Y + GG+ YV+++N +K + D + ++DGI++
Sbjct: 206 LNKGLRISIT--DKREGLKQEKHYHYEGGITSYVKYINENKDVIFDEPIYTDGEMDGISV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N +++K +K+KD +L+
Sbjct: 264 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKILKEKDDNLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IISV+ PNP+FEGQTKT+LGN EV K+ ++ E L+ +L +P + I
Sbjct: 323 GDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEALSRFLLENPAIAKKI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS E +E+FIVEGDSAGGS
Sbjct: 383 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G +F RYH
Sbjct: 443 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GAEFDVSKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y A
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGA 561
Query: 421 ELK-KVKSSFPSNALY----SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ + K++++F ++ ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+
Sbjct: 562 DQEDKLRAAFEKYSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAEAD 621
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG +V+ R+E I+ A LD
Sbjct: 622 KIFDMLMGDKVEPRREFIEENAVYSTLD 649
>gi|387132329|ref|YP_006298301.1| DNA gyrase subunit B [Prevotella intermedia 17]
gi|386375177|gb|AFJ09678.1| DNA gyrase, B subunit [Prevotella intermedia 17]
Length = 656
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/516 (45%), Positives = 336/516 (65%), Gaps = 21/516 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + V D+ GTR +FWPD +FTT + F + +A R+RELAF
Sbjct: 146 YQQEYEQGKPLYPVKI----VGDTDKTGTRQQFWPDASIFTTTV-FQWDIVARRMRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
LN + I L + E E F A GL+E+V++++ + L D V+ + + GI
Sbjct: 201 LNAGIKITLTDLRPNEEGKTRQEVFHAKDGLKEFVRYVDRHRTHLFDDVIYLKTEKQGIP 260
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKDK 176
I++A+ + +D Y++ + Y N+I TI+GGTH+ G +A+LTRTL S +K ++
Sbjct: 261 IEVAVMYNTD-YNENIHSYVNNINTIEGGTHLTGFRAALTRTLKSYADNEPQIAKQIEKA 319
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
I ++GE REGLT +IS++V P+FEGQTKT+LGN EV V Q+V E L+ YLE +P
Sbjct: 320 KIEITGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVSGAVQQAVGEALSYYLEENPA 379
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
I K + A A +AA++AR+ V++K+V+ LPGKLADCS+ P+E EIF+VEGD
Sbjct: 380 EAKLICDKVILAATARIAARKARESVQRKNVMTGGGLPGKLADCSNKDPKECEIFLVEGD 439
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGE-DF 353
SAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV GE DF
Sbjct: 440 SAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEAESVMNIIQSIGVRFGVDGESDF 499
Query: 354 KK--EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK 411
+ + LRY KIII+TDADVDG+HI TL++T FYRY + +EG +Y+ PPLYK K
Sbjct: 500 EANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMPRVIEEGHLYIATPPLYKCTYKK 559
Query: 412 QVQYCYDDAE----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLV 467
+YCY + + L+K N QR+KGLGEM P QLWETT++P+ R+LKQ+
Sbjct: 560 VSEYCYTEQQRLQFLEKYAGGDEENKAVHTQRYKGLGEMNPEQLWETTMDPKTRLLKQVT 619
Query: 468 IEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
IE+A+ A+ +FS LMG V+ R+E I+ A N+D
Sbjct: 620 IENASTADEMFSMLMGDDVEPRREFIEQNATYANID 655
>gi|306833889|ref|ZP_07467013.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus bovis
ATCC 700338]
gi|304423890|gb|EFM27032.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus bovis
ATCC 700338]
Length = 650
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/510 (44%), Positives = 343/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V+ L + DR GT + F PD ++FT FD + +A RI+ELAF
Sbjct: 150 HYQEYRRGHVVSDLAV----IGDTDRHGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAF 205
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I++ ++E + EK+ Y + GG+ YV+++N +K+ + + + ++DG+
Sbjct: 206 LNRGLRISITDKREGIEQEKH----YHYEGGISSYVEFINENKEAIFENPIYTDGELDGV 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + +Y +T++ +AN+I T +GGTH +G + +LTR +N +++K +K+KD +
Sbjct: 262 SVEVAMQYTT-SYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKLLKEKDDN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E + +L +P +
Sbjct: 321 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSRFLLENPQIAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS +E+FIVEGDSAG
Sbjct: 381 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDATMNELFIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GRDR QAILP+RGKILNVE+ + NEEI++L A+G G G +F R
Sbjct: 441 GSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GAEFDVSKAR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYD 418
YHK++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y
Sbjct: 500 YHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQP 559
Query: 419 DA----ELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
A EL++ + + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAE
Sbjct: 560 GANQEIELQEAMARHSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAE 619
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG RV+ R+E I+ A LD
Sbjct: 620 ADKIFDMLMGDRVEPRREFIEENAVYSTLD 649
>gi|288905669|ref|YP_003430891.1| DNA gyrase subunit B [Streptococcus gallolyticus UCN34]
gi|386338120|ref|YP_006034289.1| DNA gyrase subunit B [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288732395|emb|CBI13967.1| DNA gyrase subunit B [Streptococcus gallolyticus UCN34]
gi|334280756|dbj|BAK28330.1| DNA gyrase subunit B [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 650
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/510 (44%), Positives = 343/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V+ L + DR GT + F PD ++FT FD + +A RI+ELAF
Sbjct: 150 HYQEYRRGHVVSDLAV----IGDTDRHGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAF 205
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I++ ++E + EK+ Y + GG+ YV+++N +K+ + + + ++DGI
Sbjct: 206 LNRGLRISITDKREGIEQEKH----YHYEGGISSYVEFINENKEVIFENPIYTDGELDGI 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + +Y +T++ +AN+I T +GGTH +G + +LTR +N +++K +K+KD +
Sbjct: 262 SVEVAMQYTT-SYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKLLKEKDDN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E + +L +P +
Sbjct: 321 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSRFLLENPQIAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS +E+FIVEGDSAG
Sbjct: 381 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDATMNELFIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GRDR QAILP+RGKILNVE+ + NEEI++L A+G G G +F R
Sbjct: 441 GSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GAEFDVSKAR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYD 418
YHK++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y
Sbjct: 500 YHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQP 559
Query: 419 DA----ELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
A EL++ + + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAE
Sbjct: 560 GANQEIELQEAMARHSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAE 619
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG RV+ R+E I+ A LD
Sbjct: 620 ADKIFDMLMGDRVEPRREFIEENAVYSTLD 649
>gi|333029415|ref|ZP_08457476.1| DNA gyrase, B subunit [Bacteroides coprosuis DSM 18011]
gi|332740012|gb|EGJ70494.1| DNA gyrase, B subunit [Bacteroides coprosuis DSM 18011]
Length = 652
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/510 (45%), Positives = 334/510 (65%), Gaps = 15/510 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y+ GKP V V + D GT+ FWPD +FT + + ++ +A R+RELAF
Sbjct: 148 YRQEYACGKP----QYPVKEVGTTDDTGTKQTFWPDPTIFTVLV-YSYDILATRMRELAF 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAG--GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I+L + + E Y F GL+E+V+++++ ++ L +DV+ + G+
Sbjct: 203 LNAGLKISLTDKRTQNEDGTYKSESFQSKEGLKEFVRYIDSSREHLVNDVIYLNTEKQGV 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I++A+ + + ++S+ + Y N+I TI+GGTH+ G + +LTRTL + +K + +
Sbjct: 263 PIEVAIMYNT-SFSENIHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDNKLLDKIKVD 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT +IS++V P+FEGQTKT+LGN EV VDQ+V E L YLE HP
Sbjct: 322 ISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNTEVMGAVDQAVGEALNYYLEEHPREAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A A AA++AR+LV++KS + LPGKLADCS PE E+F+VEGDSAG
Sbjct: 382 TIVDKVILAATARHAARKARELVQRKSPMSGGGLPGKLADCSEKNPEICELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA-- 357
G+AKQGRDR FQAILPLRGKILNVE+ ++EEI+N+ ALG+ + E+ KEA
Sbjct: 442 GTAKQGRDRSFQAILPLRGKILNVEKAMYHKALESEEIRNIYTALGVTIGTEEDSKEANL 501
Query: 358 --LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
LRYHKIII+TDADVDG+HI TL++TFF+RY + G +Y+ PPLY +GK +Y
Sbjct: 502 EKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQMIQNGYLYIATPPLYLCRKGKTEEY 561
Query: 416 CYDDAELKKVKSSF--PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
C+ + + +++ S + IQR+KGLGEM QLWETT++P+ RMLKQ+ I++A++
Sbjct: 562 CWTEEQRLAFINNYGGGSESGIHIQRYKGLGEMNAHQLWETTMDPDNRMLKQVTIDNASD 621
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +FS LMG V R+E I+ A N+D
Sbjct: 622 ADRIFSMLMGEDVGPRREFIEENATYANID 651
>gi|363583067|ref|ZP_09315877.1| DNA gyrase subunit B [Flavobacteriaceae bacterium HQM9]
Length = 645
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/511 (44%), Positives = 334/511 (65%), Gaps = 20/511 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSK---DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRE 59
+ Q+Y RGK V PV S D+ GT + F PD+ +F ++++++T+A R+RE
Sbjct: 144 WEQEYERGKAV-------YPVKSTGDTDKNGTIVTFLPDRSIFQQTVEYNYDTLASRMRE 196
Query: 60 LAFLNPKLTIALRKEDSDPEKNQY-NEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDV 116
LA+LN +TI L + +K ++ +E F + GL+E+V +L+ + P+ V+ +
Sbjct: 197 LAYLNKGITITLTDARNTDDKGEFISETFHSNEGLKEFVSFLDASRNPIIGHVIAMEGEK 256
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
+ I +++A+ + +D+Y++ + Y N+I T +GGTH+ G + LT TL S +
Sbjct: 257 NDIPVEVAMIY-NDSYAENLHSYVNNINTHEGGTHLSGFRRGLTSTLKKFADNSGLLDKL 315
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
++G+ REGLT IISV+V P+FEGQTKT+LGN EV V Q+V E L YLE +P
Sbjct: 316 KFEIAGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVTSAVSQAVSEMLENYLEENPA 375
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
+I+ K + A +A AAK+AR++V++K+V+ LPGKL+DCS T P E EIF+VEGD
Sbjct: 376 DAKTIIQKVILAAQARHAAKKAREMVQRKTVMSIGGLPGKLSDCSETDPAECEIFLVEGD 435
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356
SAGG+AKQGRDR FQAILPLRGKILNVE+ + +++NEEI+N+ ALG+ + E+ K
Sbjct: 436 SAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVSIGTEEDSKA 495
Query: 357 ----ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ 412
LRYHK++I+ DADVDG+HI TL+LTFF+RY K L ++G +Y+ PPLY V++G +
Sbjct: 496 LNLTKLRYHKVVIMCDADVDGSHIATLILTFFFRYMKELIEQGYVYIAAPPLYLVKKGAK 555
Query: 413 VQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
QY ++D + + + N+ IQR+KGLGEM QLW+TT+NPE R ++Q+ IE
Sbjct: 556 KQYAWNDDQRDILVKEYGENS--KIQRYKGLGEMNAEQLWDTTMNPEFRTMRQVTIESMT 613
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ VFS LMG V R+E I+ A N+D
Sbjct: 614 EADRVFSMLMGDEVPPRREFIEKNAIYANID 644
>gi|374597859|ref|ZP_09670861.1| DNA gyrase subunit B [Myroides odoratus DSM 2801]
gi|423323806|ref|ZP_17301648.1| DNA gyrase, B subunit [Myroides odoratimimus CIP 103059]
gi|373909329|gb|EHQ41178.1| DNA gyrase subunit B [Myroides odoratus DSM 2801]
gi|404609024|gb|EKB08449.1| DNA gyrase, B subunit [Myroides odoratimimus CIP 103059]
Length = 646
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/508 (44%), Positives = 337/508 (66%), Gaps = 14/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+YS+GK + + + D++GT + F PD +FT +++ ++T+A R+RELAF
Sbjct: 145 YEQEYSKGKALFPVKV----IGETDKRGTTVMFKPDPTIFTQTLEYSYDTLASRLRELAF 200
Query: 63 LNPKLTIALR-KEDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN LTI L + D + Q +E FF+ GL+E++++L+ ++ P+ ++V+ D +
Sbjct: 201 LNKGLTITLTDAREVDEKGQQKSEVFFSKEGLKEFIKFLDGNRTPIINEVIWMESDKGDV 260
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++AL + +D YS+ + Y N+I T +GGTH++G + LTRTL S +
Sbjct: 261 PVEVALVY-NDTYSENIYSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLDKLKFE 319
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT IISV+V P+FEGQTKT+LGN EV V Q+V E L YLE +P+
Sbjct: 320 ISGDDFREGLTAIISVKVMEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPNDAK 379
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A +A AAK+AR++V++K+V+ LPGKL+DCS P + E+F+VEGDSAG
Sbjct: 380 IIVQKVILAAQARHAAKKAREMVQRKTVMTGGGLPGKLSDCSEQDPTKCEVFLVEGDSAG 439
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK---- 355
G+AKQGRDR FQAILPLRGKILNVE+ ++++EEI+N+ ALG+ + E+ K
Sbjct: 440 GTAKQGRDRNFQAILPLRGKILNVEKAMGHKVFESEEIKNIFTALGVTIGTEEDSKALNL 499
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
E LRYHK++I+ DADVDG+HI TL+LTFF+RY + L + G +++ PPLY V++G++ Y
Sbjct: 500 EKLRYHKVVIMCDADVDGSHIATLILTFFFRYMRGLIENGHVFIATPPLYMVKKGQRKVY 559
Query: 416 CYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ D E + + + S+QR+KGLGEM QLWETT+NPE R+L+Q+ I+D EA+
Sbjct: 560 AWSDEERIDLMEEMGNGS--SVQRYKGLGEMNAEQLWETTMNPEHRILRQVRIDDLKEAD 617
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+VFS LMG V R++ I+ A +D
Sbjct: 618 LVFSMLMGDEVPPRRDFIEKNATYAKID 645
>gi|345881483|ref|ZP_08833001.1| DNA gyrase, B subunit [Prevotella oulorum F0390]
gi|343919448|gb|EGV30195.1| DNA gyrase, B subunit [Prevotella oulorum F0390]
Length = 656
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 236/517 (45%), Positives = 340/517 (65%), Gaps = 23/517 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + V ++GTR +FWPD +FTT F + +A R+RELA+
Sbjct: 146 YQQEYEKGKPLYPVKV----VGETTKRGTRQQFWPDPTIFTTTT-FKWDIVASRMRELAY 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
LN + I LR + E E F A GL+E+V++++ + L D V+ + + GI
Sbjct: 201 LNAGIRITLRDLRPNEEGKTREEVFHAKDGLKEFVRYVDRHRTHLFDDVIYLKTEKQGIP 260
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKDK 176
I++A+ + +D YS+ + Y N+I TI+GGTH+ G +A+LTRTL + +K ++
Sbjct: 261 IEVAIMYNTD-YSENIHSYVNNINTIEGGTHLTGFRAALTRTLKAYADAEPSIAKQIEKA 319
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
I ++GE REGLT +IS++V P+FEGQTKT+LGN EV V Q+V E L+ YLE HP
Sbjct: 320 KIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVSGAVQQAVGEALSNYLEEHPI 379
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
I K + A A +AA++AR+ V++KSV+ LPGKLADCS+ P++ EIF+VEGD
Sbjct: 380 EAKKICEKVVLAATARIAARKARESVQRKSVMSGGGLPGKLADCSNKDPKDCEIFLVEGD 439
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFK 354
SAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV+GED +
Sbjct: 440 SAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAESVMNIIQSIGVRFGVEGEDDR 499
Query: 355 K---EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK 411
+ + LRY KIII+TDADVDG+HI TL++T FYR+ + ++G +Y+ PPLYK K
Sbjct: 500 EANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPKVIEDGHLYIATPPLYKCTYKK 559
Query: 412 QVQYCYDDAEL-----KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQL 466
+YCY + + K V+ AL++ QR+KGLGEM P QLWETT++P QR+LKQ+
Sbjct: 560 VSEYCYTEQQRQAFIDKYVEGKEDDKALHT-QRYKGLGEMNPDQLWETTMDPAQRLLKQV 618
Query: 467 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
I++AAEA+ +FS LMG V+ R+ I+ A N+D
Sbjct: 619 TIQNAAEADEIFSMLMGDDVEPRRVFIEENATYANID 655
>gi|421186532|ref|ZP_15643923.1| DNA gyrase subunit B [Oenococcus oeni AWRIB418]
gi|399966874|gb|EJO01375.1| DNA gyrase subunit B [Oenococcus oeni AWRIB418]
Length = 652
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/501 (46%), Positives = 327/501 (65%), Gaps = 9/501 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ + RG T + P+ + ++GT + F PD +F I FD+ T+A RIRELAF
Sbjct: 153 YYMDFERGHIKTEMKLLDEPM--RLKRGTIVHFAPDPDIFRETIVFDYRTLASRIRELAF 210
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L +++ + DP KN+ + + GG+ EYV++LN +K+PL + V + +GI +
Sbjct: 211 LNKGLRLSITDKRVDPVKNE--SFMYEGGIAEYVKFLNKNKQPLFPEPVYVEGEENGIQV 268
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +DA ++T++ + N+I T +GGTH G K +LTR +N KK +KD D LS
Sbjct: 269 EVALQY-TDAVAETLMSFTNNIHTHEGGTHETGFKMALTRIINDYAKKKGILKDSDDPLS 327
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG+T I+S++ P+P+FEGQTKT+LGN + ++ V+ ++ +P+ +I
Sbjct: 328 GEDVREGITAIVSIKHPDPQFEGQTKTKLGNTDAQQAVNHQFSTIFNRFMMENPETARAI 387
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+K L A KA +AAK+ARDL R+KS L S+L GKLAD +S PE SE+FIVEGDSAGGS
Sbjct: 388 ANKGLIASKARVAAKKARDLTRKKSGLEISALAGKLADNTSRDPEISELFIVEGDSAGGS 447
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R QAILP+RGKILNVE+ + NEEI++L A+G G GE+F YH
Sbjct: 448 AKQGRSRLTQAILPIRGKILNVEKATLDKVLANEEIRSLFTAMGTGF-GEEFDISKAHYH 506
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY--DD 419
K+II+TDADVDGAHIRTLLLT F+RY + L D G IY+ PPLY V G Q Y D
Sbjct: 507 KVIIMTDADVDGAHIRTLLLTLFFRYMRPLIDAGYIYIAQPPLYGVAIGNSDQRVYLDSD 566
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL + ++ P++ IQR+KGLGEM VQLW+TT++P+ R L ++ E E + F
Sbjct: 567 EELDQYTATLPASPKPRIQRYKGLGEMDAVQLWDTTMDPKHRRLLRVDPEYQPEVDTTFD 626
Query: 480 SLMGARVDTRKELIQNAANLV 500
LMG RV+ R+E I++ A V
Sbjct: 627 MLMGDRVEPRREFIEDNAQFV 647
>gi|325978699|ref|YP_004288415.1| DNA gyrase subunit B [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|325178627|emb|CBZ48671.1| DNA gyrase subunit B [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 620
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/510 (44%), Positives = 343/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V+ L + DR GT + F PD ++FT FD + +A RI+ELAF
Sbjct: 120 HYQEYRRGHVVSDLAV----IGDTDRHGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAF 175
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I++ ++E + EK+ Y + GG+ YV+++N +K+ + + + ++DGI
Sbjct: 176 LNRGLRISITDKREGIEQEKH----YHYEGGISSYVEFINENKEVIFENPIYTDGELDGI 231
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + +Y +T++ +AN+I T +GGTH +G + +LTR +N +++K +K+KD +
Sbjct: 232 SVEVAMQYTT-SYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKLLKEKDDN 290
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E + +L +P +
Sbjct: 291 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSRFLLENPQIAK 350
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS +E+FIVEGDSAG
Sbjct: 351 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDATMNELFIVEGDSAG 410
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GRDR QAILP+RGKILNVE+ + NEEI++L A+G G G +F R
Sbjct: 411 GSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GAEFDVSKAR 469
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYD 418
YHK++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y
Sbjct: 470 YHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQP 529
Query: 419 DA----ELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
A EL++ + + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAE
Sbjct: 530 GANQEIELQEAMARHSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAE 589
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG RV+ R+E I+ A LD
Sbjct: 590 ADKIFDMLMGDRVEPRREFIEENAVYSTLD 619
>gi|260591755|ref|ZP_05857213.1| DNA gyrase, B subunit [Prevotella veroralis F0319]
gi|260536039|gb|EEX18656.1| DNA gyrase, B subunit [Prevotella veroralis F0319]
Length = 657
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/517 (45%), Positives = 341/517 (65%), Gaps = 22/517 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + V + GTR +FWPD +FTT + + + +A R+RELA+
Sbjct: 146 YQQEYEKGKPLYPVKV----VGETQKTGTRQQFWPDPTIFTTTV-YQWDIVARRMRELAY 200
Query: 63 LNPKLTIALRKEDSDPEKNQY-NEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN + I L DPE + E F A GL+E+V++++ ++ L D V+ + + I
Sbjct: 201 LNAGIKITLTDLRPDPETGKTRTEVFHAKDGLKEFVRYVDRHRQHLFDDVIYLKTEKQNI 260
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKD 175
I++A+ + +D Y++ + Y N+I TI+GGTH++G +A+LTRTL S SK ++
Sbjct: 261 PIEVAVMYNTD-YTENIHSYVNNINTIEGGTHLQGFRAALTRTLKSYADNDPQISKQIEK 319
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
I ++GE REGLT +I+++V P+FEGQTKT+LGN EV V Q+V E L++YLE HP
Sbjct: 320 AKIEIAGEDFREGLTAVIAIKVAEPQFEGQTKTKLGNSEVAGAVQQAVGEALSDYLEEHP 379
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
+ I +K + A A +AA++AR+ V++K+V+ LPGKLADCS+ P++ EIF+VEG
Sbjct: 380 NEAKMICNKVILAATARVAARKARESVQRKNVMSGGGLPGKLADCSNKDPKDCEIFLVEG 439
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGE-D 352
DSAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV+ E D
Sbjct: 440 DSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEAESVMNIIQSIGVRFGVENEGD 499
Query: 353 FKK--EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG 410
F+ + LRY KIII+TDADVDG+HI TL++T FYRY + ++G +Y+ PPLYK
Sbjct: 500 FEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMPKVIEQGHLYIATPPLYKCTYK 559
Query: 411 KQVQYCYDD----AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQL 466
K +YCY + A L K + QR+KGLGEM P QLWETT++P+ R+LKQ+
Sbjct: 560 KVSEYCYTEQQRQAFLDKYGNGVEDGKTIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQV 619
Query: 467 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
IE+AA+A+ +FS LMG V+ R+E I+ A N+D
Sbjct: 620 TIENAADADEIFSMLMGDDVEPRREFIEKNATYANID 656
>gi|300774234|ref|ZP_07084101.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Sphingobacterium
spiritivorum ATCC 33861]
gi|300758913|gb|EFK55742.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Sphingobacterium
spiritivorum ATCC 33861]
Length = 652
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/515 (45%), Positives = 348/515 (67%), Gaps = 23/515 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y +GKP V + +R GT + F+PD ++FT ++++T++ R+RELAF
Sbjct: 146 FKQEYEKGKP----KYDVKAIGESERTGTTVTFFPDPEIFTMTTVYNYDTLSNRLRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDV 116
LN +LTI +E D + + +F GGL+E+V++L+ +++ L V G ++
Sbjct: 202 LNKGIRLTIVDEREILDDGSFRKDVFFSEGGLQEFVKFLDGNRQSLISNPIYVEGIKQ-- 259
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
G+ ++LALQ+ +D YS+ + Y N+I TI+GG+H+ G + LTRTL + S +K+
Sbjct: 260 -GVPVELALQY-NDTYSENVHSYVNNINTIEGGSHVAGFRRGLTRTLKKYAEDSGLLKNL 317
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
+ ++G+ REGLT +ISV+V P+FEGQTKT+LGN EV VD +V E L+ YLE +P
Sbjct: 318 KVEIAGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDVAVGEILSTYLEENPR 377
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
I+ K + A +A AA++AR++V++K+V+ S LPGKLADCS P + EIF VEGD
Sbjct: 378 EAKMIVQKVVIAAQARAAARKAREMVQRKTVMGGSGLPGKLADCSDNDPHKCEIFFVEGD 437
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK- 355
SAGG+AKQGRDR+FQAI+PLRGKILNVE+ E +Y+NEEI+N+ ALG+ V D K
Sbjct: 438 SAGGTAKQGRDRKFQAIMPLRGKILNVEKAMEHKIYENEEIKNMFTALGVSVGTADDAKA 497
Query: 356 ---EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ 412
E LRYHKI+I+TDADVDG+HI TL+LTF++RY K L + G +Y+ PPLY V++GK+
Sbjct: 498 LNLEKLRYHKIVIMTDADVDGSHIATLILTFYFRYMKELIENGYVYIATPPLYLVKKGKE 557
Query: 413 VQYCYDDAE----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI 468
+Y + + + ++++K + ++++ +QR+KGLGEM QLW+TT+NPE R L+Q+ I
Sbjct: 558 SEYAWTEEQRLQAIQRLKGAGKEDSVH-VQRYKGLGEMNAEQLWDTTMNPEHRTLRQVTI 616
Query: 469 EDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
++AAE + +FS LMG V R+E I+ A +D
Sbjct: 617 DNAAECDRIFSMLMGDEVAPRREFIEKNARYAKID 651
>gi|389576815|ref|ZP_10166843.1| DNA gyrase, B subunit [Eubacterium cellulosolvens 6]
gi|389312300|gb|EIM57233.1| DNA gyrase, B subunit [Eubacterium cellulosolvens 6]
Length = 645
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/505 (47%), Positives = 337/505 (66%), Gaps = 11/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK T V+ ++ GTR+ F PD +F + +D T+ R+RE AF
Sbjct: 147 YKQRYERGK--TMYKLKVVGECDPEKTGTRVDFKPDGTIFEETV-YDFKTLKTRLRETAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
L L I LR D+ + Q + + GG++E+VQ+LN + L+ D++ F + + +
Sbjct: 204 LTKGLKITLR--DAREGQEQEKVFHYEGGIKEFVQYLNKSNEGLYQDILYFEGVQNDVVV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q +D+Y++T+ G+ N+I T +GG H+ G + +LTRT N G+K K +KD D +LS
Sbjct: 262 EVSMQH-NDSYNETVYGFVNNILTPEGGMHVMGFRQALTRTFNDYGRKMKLLKDNDENLS 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT IISV++ +P+FEGQTK +LGN E R VD V + L YLE HPDV +I
Sbjct: 321 GEDIREGLTAIISVKIGDPQFEGQTKQKLGNSEARSAVDAVVSKQLGIYLEQHPDVGKTI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KSL + +A AA++ARDL R+K+ L +LPGKLADCS P+ EIFIVEGDSAGGS
Sbjct: 381 IEKSLVSQRAREAARKARDLTRRKTALDGLALPGKLADCSDKDPKHCEIFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK R+RR QAILPLRGKILNVE+ +Y N EI+++I A G G+ +DF LRY
Sbjct: 441 AKVARNRRTQAILPLRGKILNVEKARLDRIYGNAEIRSMITAFGTGIH-DDFDLSKLRYD 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TL+LTF YR+ L G +Y+ PPLYKVER K+V Y Y D E
Sbjct: 500 KIIIMTDADVDGAHIATLMLTFLYRFMPELIKSGHVYLAKPPLYKVERNKKVWYAYSDEE 559
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI--EDAAEANVVFS 479
L K+ + + IQR+KGLGEM QLWETT++PE R+L ++ + +DA+E ++ F+
Sbjct: 560 LNKIMNEIGRDGGNRIQRYKGLGEMDADQLWETTMDPENRVLLRVNMDDDDASEIDLTFT 619
Query: 480 SLMGARVDTRKELIQN-AANLVNLD 503
+LMG +V+ R+E I+ A ++ NLD
Sbjct: 620 TLMGDKVEPRREFIEERAKDVQNLD 644
>gi|448317100|ref|ZP_21506658.1| DNA gyrase subunit B [Natronococcus jeotgali DSM 18795]
gi|445604524|gb|ELY58471.1| DNA gyrase subunit B [Natronococcus jeotgali DSM 18795]
Length = 643
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/498 (46%), Positives = 334/498 (67%), Gaps = 7/498 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ + G+PV + V ++ + GT IRFWPD +F T +F +T++ R+RELAF
Sbjct: 142 FRHAFEGGEPVGDME-RVRDMEPDEETGTEIRFWPDGDIFETG-EFSFSTLSSRLRELAF 199
Query: 63 LNPKLTIALR--KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN + I LR +E++D Y + GG+ E+V++LN + +HD V+ F + + +
Sbjct: 200 LNSGVRITLRDEREETDDGAAVEETYEYEGGIREFVEYLNETRAVMHDDVIYFEGEDENV 259
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+Q D ++ +AN+I T +GGTH+ G K +LTR +N G + + D D +
Sbjct: 260 QVEVAMQATED-LQGSIHAFANNINTREGGTHLTGFKTALTRVVNDYGNERNLLGDVDGN 318
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L GE +REGLT +ISV+ P+P+FEGQTKT+LGN EVR VV+ ++ E L Y E HPD +
Sbjct: 319 LKGEDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGVVEGAMHEQLGTYFEEHPDTAE 378
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I++K++ A KA AA++A +L R+KS L S+SLPGKLADC + P+E+E+FI EGDSAG
Sbjct: 379 AIVAKAVEAAKARKAAQKAEELTRRKSALESTSLPGKLADCQTRDPDEAELFIAEGDSAG 438
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQ R+ FQAILP++GKILNVE+ + +N+EI+N+I A+G G+ G++F + +R
Sbjct: 439 GSAKQARNPEFQAILPIKGKILNVEKHRLDRILENDEIRNMITAIGAGI-GDEFDIDDVR 497
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
Y KII+ TDADVDGAHIRTLLLTFFYR+ + L + G +Y PPLY++ + D
Sbjct: 498 YKKIIMATDADVDGAHIRTLLLTFFYRHMRPLLEGGYVYATQPPLYRIRYRGETYDAMTD 557
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
AE ++ +QRFKGLGEM P QLWETT+NPE R+LKQ+ +EDAA A+ +FS
Sbjct: 558 AERDEIVEEVCDGNPSQVQRFKGLGEMNPEQLWETTMNPENRILKQITVEDAAAADKMFS 617
Query: 480 SLMGARVDTRKELIQNAA 497
LMG V+ RK+ I++ A
Sbjct: 618 VLMGDAVEPRKQFIKDHA 635
>gi|383812021|ref|ZP_09967468.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 306 str. F0472]
gi|383355407|gb|EID32944.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 306 str. F0472]
Length = 657
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/517 (45%), Positives = 341/517 (65%), Gaps = 22/517 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + V + GTR +FWPD +FTT + + + +A R+RELA+
Sbjct: 146 YQQEYEKGKPLYPVKV----VGETQKTGTRQQFWPDPTIFTTTV-YQWDIVARRMRELAY 200
Query: 63 LNPKLTIALRKEDSDPEKNQY-NEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN + I L DPE + E F A GL+E+V++++ ++ L D V+ + + I
Sbjct: 201 LNAGIKITLTDLRPDPETGKTRTEVFHAKDGLKEFVRYVDRHRQHLFDDVIYLKTEKQNI 260
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKD 175
I++A+ + +D Y++ + Y N+I TI+GGTH++G +A+LTRTL S SK ++
Sbjct: 261 PIEVAVMYNTD-YTENIHSYVNNINTIEGGTHLQGFRAALTRTLKSYADNDPQISKQIEK 319
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
I ++GE REGLT +I+++V P+FEGQTKT+LGN EV V Q+V E L++YLE HP
Sbjct: 320 AKIEIAGEDFREGLTAVIAIKVAEPQFEGQTKTKLGNSEVAGAVQQAVGEALSDYLEEHP 379
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
+ I +K + A A +AA++AR+ V++K+V+ LPGKLADCS+ P++ EIF+VEG
Sbjct: 380 NEAKMICNKVILAATARVAARKARESVQRKNVMSGGGLPGKLADCSNKDPKDCEIFLVEG 439
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGE-D 352
DSAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV+ E D
Sbjct: 440 DSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEAESVMNIIQSIGVRFGVENEGD 499
Query: 353 FKK--EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG 410
F+ + LRY KIII+TDADVDG+HI TL++T FYRY + ++G +Y+ PPLYK
Sbjct: 500 FEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMPKVIEQGHLYIATPPLYKCTYK 559
Query: 411 KQVQYCYDD----AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQL 466
K +YCY + A L K + QR+KGLGEM P QLWETT++P+ R+LKQ+
Sbjct: 560 KVSEYCYTEQQRQAFLDKYGNGVEDGKTIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQV 619
Query: 467 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
IE+AA+A+ +FS LMG V+ R+E I+ A N+D
Sbjct: 620 TIENAADADEIFSMLMGDDVEPRREFIEKNATYANID 656
>gi|336064642|ref|YP_004559501.1| DNA gyrase subunit B [Streptococcus pasteurianus ATCC 43144]
gi|334282842|dbj|BAK30415.1| DNA gyrase subunit B [Streptococcus pasteurianus ATCC 43144]
Length = 650
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/510 (44%), Positives = 343/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V+ L + DR GT + F PD ++FT FD + +A RI+ELAF
Sbjct: 150 HYQEYRRGHVVSDLAV----IGDTDRHGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAF 205
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I++ ++E + EK+ Y + GG+ YV+++N +K+ + + + ++DG+
Sbjct: 206 LNRGLRISITDKREGIEQEKH----YHYEGGISSYVEFINENKEAIFENPIYTDGELDGV 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + +Y +T++ +AN+I T +GGTH +G + +LTR +N +++K +K+KD +
Sbjct: 262 SVEVAMQYTT-SYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKLLKEKDDN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E + +L +P +
Sbjct: 321 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSRFLLENPQIAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS +E+FIVEGDSAG
Sbjct: 381 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDATMNELFIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GRDR QAILP+RGKILNVE+ + NEEI++L A+G G G +F R
Sbjct: 441 GSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GAEFDVSKAR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYD 418
YHK++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y ++ G ++ +Y
Sbjct: 500 YHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGIKVGSEIKEYIQP 559
Query: 419 DA----ELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
A EL++ + + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAE
Sbjct: 560 GANQEIELQEAMARHSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAE 619
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG RV+ R+E I+ A LD
Sbjct: 620 ADKIFDMLMGDRVEPRREFIEENAVYSTLD 649
>gi|77411131|ref|ZP_00787484.1| DNA gyrase, B subunit [Streptococcus agalactiae CJB111]
gi|77162854|gb|EAO73812.1| DNA gyrase, B subunit [Streptococcus agalactiae CJB111]
Length = 620
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/510 (44%), Positives = 341/510 (66%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L + D GT + F PD ++FT FD + +A RI+ELAF
Sbjct: 120 HYQEYQRGVVVNDLEI----IGDTDLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAF 175
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN L I++ ++E + EK EY + GG+ YV+++N +K+ + + + ++DGI
Sbjct: 176 LNRGLRISISDKREGQEVEK----EYHYEGGIGSYVEFINENKEVIFENPIYTDGELDGI 231
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ + +
Sbjct: 232 SVEVAMQYTT-GYQETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDN 290
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V
Sbjct: 291 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAK 350
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS E +E+FIVEGDSA
Sbjct: 351 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAE 410
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF +R
Sbjct: 411 GSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKVR 469
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY---- 415
Y K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G +++
Sbjct: 470 YQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKAYIQP 529
Query: 416 -CYDDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
+ EL++ ++ S + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAE
Sbjct: 530 GVNQEEELRQALDTYSSGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAE 589
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG RV+ R+E I+ A NLD
Sbjct: 590 ADKIFDMLMGDRVEPRREFIEANAVYSNLD 619
>gi|347530303|ref|YP_004837066.1| DNA gyrase subunit B [Roseburia hominis A2-183]
gi|345500451|gb|AEN95134.1| DNA gyrase, B subunit [Roseburia hominis A2-183]
Length = 640
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 238/505 (47%), Positives = 335/505 (66%), Gaps = 11/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y GKP + V+ S ++ GT++ F PD +F + +D++T+ R+RE AF
Sbjct: 142 YSQSYKIGKPDEPV--KVIGKCSAEKHGTKVTFHPDPTIFEETV-YDYDTLKQRLRETAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
L L I L DP E+ +AGG++E+V +LN K+ L+ +V+ DG+ +
Sbjct: 199 LTKGLRIVLSDARVDPVHTH--EFHYAGGIKEFVTYLNKSKEALYPEVIYCEGTRDGVYV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q +D+Y+D + N+I T +GGTH+ G + +LT+T N+ + +K +KD + +L+
Sbjct: 257 EVAMQH-NDSYNDATYSFVNNIITPEGGTHLAGFRNALTKTFNTYARANKILKDTEPALT 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT IIS+++ P+FEGQTK +LGN E R VD V E LT +LE +P V +I
Sbjct: 316 GDDIREGLTAIISIKIEEPQFEGQTKQKLGNSEARGAVDSVVSEQLTYFLEQNPTVAKNI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
KSL A +A AA++ARDL R+K+ L SLPGKLADCS P+ EIFIVEGDSAGGS
Sbjct: 376 CEKSLLAQRAREAARKARDLTRRKTALEGMSLPGKLADCSDKDPKNCEIFIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK R R QAILPLRGKILNVE+ +Y N EI+ +I A G G+ EDF LRY+
Sbjct: 436 AKTARSRATQAILPLRGKILNVEKARLDKIYGNAEIKAMITAFGTGIH-EDFDISKLRYN 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TL+LTF YR+ L +G +Y+ PPLYK+E+ K V Y YDD E
Sbjct: 495 KIIIMTDADVDGAHIATLMLTFLYRFMPELIKQGHVYLATPPLYKIEKNKNVWYAYDDNE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI--EDAAEANVVFS 479
L + + + IQR+KGLGEM QLWETT++PE+R+LK+++I E+++E +V F+
Sbjct: 555 LNSILTEIGRDGNNKIQRYKGLGEMDAEQLWETTMDPEKRILKRVMIDEENSSEIDVTFT 614
Query: 480 SLMGARVDTRKELI-QNAANLVNLD 503
+LMG +V+ R+E I +NA + NLD
Sbjct: 615 TLMGDKVEPRREFIEENAKYVQNLD 639
>gi|302388606|ref|YP_003824427.1| DNA gyrase subunit B [Thermosediminibacter oceani DSM 16646]
gi|302199234|gb|ADL06804.1| DNA gyrase subunit B [Thermosediminibacter oceani DSM 16646]
Length = 637
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/508 (47%), Positives = 348/508 (68%), Gaps = 16/508 (3%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
+Y Q+Y RGKPVT V + GT+I F PD Q+F F+++ +A R+RE
Sbjct: 140 FKYFQRYERGKPVT----EVKKIGEASDTGTKITFMPDDQIFEDT-SFNYDILAQRLREQ 194
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRK-DVDG 118
AFLN L I ++ D + + + GG+ +V++LN +K LH D + R +G
Sbjct: 195 AFLNRGLKIEIK----DLRTGKEQVFHYEGGIVSFVKYLNRNKDVLHEDPIYMRAASQEG 250
Query: 119 -ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
+++ALQ+ +D+Y++ +L +AN+I T +GGTH+ G K++LTR++N +K +K++D
Sbjct: 251 EWEVEVALQY-NDSYAENVLSFANNINTQEGGTHLVGFKSALTRSINDYARKMNLLKEQD 309
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+LSG+ VREGLT +ISV++ NP+FEGQTKT+LGN E+R +V+ V + + +LE +P V
Sbjct: 310 PNLSGDDVREGLTAVISVKLVNPQFEGQTKTKLGNSEMRGIVESVVGDAMNRFLEENPSV 369
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K++SA +A AA++AR+LVR+K+ L +SLPGKLADC P E+++VEGDS
Sbjct: 370 ARVIVEKAISAARAREAARKARELVRRKNALDRTSLPGKLADCREKDPRLCELYLVEGDS 429
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRD RFQAILPLRGKILNVE+ + NEEI+ +I ALG G+ G+DF E
Sbjct: 430 AGGSAKQGRDPRFQAILPLRGKILNVEKARLDKILGNEEIRAMITALGTGI-GDDFDIEK 488
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRYHKII++ DADVDGAHIRTLLLTF YRY + L + G +Y+ PPLY+V +GK+V Y Y
Sbjct: 489 LRYHKIILMADADVDGAHIRTLLLTFLYRYMRPLIEAGMVYIAQPPLYQVSKGKEVYYAY 548
Query: 418 DDAELKKVKSSFPSNALYS-IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 476
D ELK + + + ++RFKGLGEM QLW+TT+NP+ R + ++ +EDA EA+
Sbjct: 549 SDEELKAILERLGKDRDKAEVKRFKGLGEMNADQLWDTTMNPKTRTILKVNLEDAIEADE 608
Query: 477 VFSSLMGARVDTRKELI-QNAANLVNLD 503
+F+ LMG +V+ R++ I ++AA + NLD
Sbjct: 609 IFTILMGEKVEPRRQFIFEHAAEVRNLD 636
>gi|291547631|emb|CBL20739.1| DNA gyrase subunit B [Ruminococcus sp. SR1/5]
Length = 641
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 238/506 (47%), Positives = 338/506 (66%), Gaps = 11/506 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY Q+Y RGK T V+ GT++ F PDK++F + +D++ + R+RE+A
Sbjct: 142 EYKQRYERGK--TMYPLKVVGDCDPGLSGTKVYFLPDKEIFEETV-YDYDILKQRLREMA 198
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
FL L I L + E+ + + + GG+ E+V +LN K+ L+ +++ + DG++
Sbjct: 199 FLTKGLRIVLEDKREGQEREKV--FHYEGGIREFVSYLNRSKEALYPEIIYCEGEKDGVS 256
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++ALQ +D+Y++ G+ N+I T +GGTHI G + ++T T N +K+K +KD + +L
Sbjct: 257 VEVALQH-NDSYTENTYGFVNNINTPEGGTHITGFRNAITNTFNDYARKNKLLKDSEPNL 315
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ +REGLT I+SV++ NP+FEGQTK +LGN E R VD V + L +LE +P V +
Sbjct: 316 SGDDIREGLTAIVSVKIENPQFEGQTKQKLGNSEARGAVDSVVSKQLEIFLEQNPAVAKA 375
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
+ KS+ A +A AA++ARDL R+KS L S SLPGKLADCS PE EI+IVEGDSAGG
Sbjct: 376 TVEKSVLAQRAREAARKARDLTRRKSALDSMSLPGKLADCSDKNPENCEIYIVEGDSAGG 435
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK R+R QAILPLRGKILNVE+ +Y N+EI+ +I A G G+ EDF LRY
Sbjct: 436 SAKTARNRATQAILPLRGKILNVEKARLDKIYGNKEIKAMITAFGTGIH-EDFDISKLRY 494
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIII+TDADVDGAHI TLLLTF YR+ L +G +Y+ PPLYKVE+ K+V Y YDD
Sbjct: 495 HKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYKVEKNKKVWYAYDDD 554
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA--EANVVF 478
EL + + + IQR+KGLGEM QLWETT++PE+R+L ++ +++AA E ++ F
Sbjct: 555 ELNNILTEIGRDGNNKIQRYKGLGEMDAEQLWETTMDPEKRILLRVTMDEAATSEIDLTF 614
Query: 479 SSLMGARVDTRKELIQNAANLV-NLD 503
++LMG +V+ R+E I+ A V NLD
Sbjct: 615 TTLMGDKVEPRREFIEENARFVKNLD 640
>gi|373110591|ref|ZP_09524857.1| DNA gyrase, B subunit [Myroides odoratimimus CCUG 10230]
gi|423130304|ref|ZP_17117979.1| DNA gyrase, B subunit [Myroides odoratimimus CCUG 12901]
gi|423133984|ref|ZP_17121631.1| DNA gyrase, B subunit [Myroides odoratimimus CIP 101113]
gi|371642325|gb|EHO07893.1| DNA gyrase, B subunit [Myroides odoratimimus CCUG 10230]
gi|371645840|gb|EHO11361.1| DNA gyrase, B subunit [Myroides odoratimimus CCUG 12901]
gi|371647755|gb|EHO13251.1| DNA gyrase, B subunit [Myroides odoratimimus CIP 101113]
Length = 646
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/512 (44%), Positives = 336/512 (65%), Gaps = 22/512 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+YSRGK + + + D++GT + F PD +FT ++F ++T+AGR+REL+F
Sbjct: 145 YEQEYSRGKALFPVKV----IGETDKRGTSVTFKPDHTIFTQTLEFSYDTLAGRLRELSF 200
Query: 63 LNPKLTIALR-----KEDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKD 115
LN L I L +E+ +P+ +E FF+ GL+E++++L+ + P+ DV+ D
Sbjct: 201 LNKGLKITLTDKRVIEENGEPK----HEVFFSKEGLKEFIKFLDGSRVPIIEDVISMELD 256
Query: 116 VDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKD 175
I +++AL + +D Y++ + Y N+I T +GGTH++G + LTRTL S +
Sbjct: 257 KGEIPVEVALVY-NDTYAENIYSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGMLDK 315
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
++G+ REGLT I+SV+V P+FEGQTKT+LGN EV V Q+V E L YLE HP
Sbjct: 316 LKFEITGDDFREGLTAIVSVKVMEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEEHP 375
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
+ I+ K + A +A AAK+AR++V++K+V+ LPGKL+DCS + E+F+VEG
Sbjct: 376 NDAKIIVQKVILAAQARHAAKKAREMVQRKTVMVGGGLPGKLSDCSEQDASKCEVFLVEG 435
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK 355
DSAGG+AKQGRDR FQAILPLRGKILNVE+ +++NEEI+N+ ALG+ + E+ K
Sbjct: 436 DSAGGTAKQGRDRNFQAILPLRGKILNVEKAMGHKVFENEEIKNIFTALGVTMGTEEDSK 495
Query: 356 ----EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK 411
E LRYHK++I+ DADVDG+HI TL+LTFF+RY + L + G +Y+ PPLY V++G+
Sbjct: 496 ALNLEKLRYHKVVIMCDADVDGSHIATLILTFFFRYMRGLIENGYVYIATPPLYMVKKGQ 555
Query: 412 QVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
+ +Y + D E ++ S + S+QR+KGLGEM QLW+TT+NPE R+L+Q+ I+
Sbjct: 556 RKEYAWTDEERLELMEKMGSGS--SVQRYKGLGEMNAEQLWDTTMNPEHRILRQVTIDSL 613
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ VFS LMG V R++ I+ A +D
Sbjct: 614 QEADRVFSMLMGDEVPPRRDFIEKNATYAKID 645
>gi|395241374|ref|ZP_10418386.1| DNA gyrase subunit B [Lactobacillus pasteurii CRBIP 24.76]
gi|394481295|emb|CCI84626.1| DNA gyrase subunit B [Lactobacillus pasteurii CRBIP 24.76]
Length = 654
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 235/477 (49%), Positives = 309/477 (64%), Gaps = 6/477 (1%)
Query: 29 QGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF 88
GT + F+PD +FT I FD + RIRELAFLN L + D E + + Y F
Sbjct: 181 HGTIVHFYPDPDIFTETIVFDDKILKNRIRELAFLNKGLKLTF--TDKRKETAETDVYHF 238
Query: 89 AGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTID 147
GG++EYV +LN D L D + D DGI +++ALQ+ + Y T++ +AN+I T +
Sbjct: 239 EGGIKEYVAFLNKDTSVLFDDPIYVEGDYDGINVEVALQYTT-GYKTTLMTFANNIHTYE 297
Query: 148 GGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTK 207
GG H G K++LTR +N K+K +K+ D +L GE +REG+T +ISV+ PNP+FEGQTK
Sbjct: 298 GGMHEAGFKSALTRVVNDYAHKAKLLKENDDNLLGEDIREGMTAVISVKHPNPQFEGQTK 357
Query: 208 TRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSV 267
T+LGN R VD++ E +L +P V I+ K+ A KA AAKRAR++ R+KS
Sbjct: 358 TKLGNSNARTAVDRAFSETFNRFLMENPAVGRKIVEKAQLAEKARTAAKRAREVTRKKSG 417
Query: 268 LRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKD 327
L ++LPGKLAD +S P SE+FIVEG+SAGGSAKQGR R QAILP+RGKILNVE+
Sbjct: 418 LEIANLPGKLADNTSNDPTISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKAS 477
Query: 328 EAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRY 387
+ N+EI++L ALG G G DF E RYHK+II+TDADVDGAHIRTLLLT FY Y
Sbjct: 478 MDRILANQEIRSLFTALGTGF-GADFDVEKARYHKLIIMTDADVDGAHIRTLLLTLFYNY 536
Query: 388 QKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMM 447
+ + D+G +Y+ PPLY+V +GK V+Y D EL S + ++QR+KGLGEM
Sbjct: 537 MRPMIDKGYVYIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPSPKPTVQRYKGLGEMD 596
Query: 448 PVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV-NLD 503
QLWETT+NPE R L ++ E A A+ VF LMG V R++ IQN A V NLD
Sbjct: 597 ADQLWETTMNPENRRLDRVSPEYAKNADEVFELLMGNEVGPRRDFIQNNAKYVENLD 653
>gi|340398312|ref|YP_004727337.1| DNA gyrase subunit B [Streptococcus salivarius CCHSS3]
gi|338742305|emb|CCB92810.1| DNA gyrase subunit B [Streptococcus salivarius CCHSS3]
Length = 650
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/510 (44%), Positives = 344/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG V L + ++ GT + F PD ++F +FD +A RI+ELAF
Sbjct: 150 HFQEYKRGVVVADLAV----IGETEKHGTTVHFTPDPEIFQETTEFDFGKLAKRIQELAF 205
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGI 119
LN L I++ ++E + EK+ Y + GG+ YV+++N +K + D + ++DGI
Sbjct: 206 LNKGLRISITDKREGLEQEKH----YHYEGGITSYVKYINENKDVIFDEPIYTDGEMDGI 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N +++K +K+KD +
Sbjct: 262 SVEVAMQYTT-GYHETLMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKILKEKDDN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+G+ VREGLT IISV+ PNP+FEGQTKT+LGN EV K+ ++ E L+ +L +P +
Sbjct: 321 LTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEALSRFLLENPAIAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS E +E+FIVEGDSAG
Sbjct: 381 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G +F R
Sbjct: 441 GSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GAEFDVSKAR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYD 418
YHK++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y
Sbjct: 500 YHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLESGYVYIAQPPIYGVKVGSEIKEYIQP 559
Query: 419 DAELK-KVKSSFPSNALY----SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
A+ + K++++ ++ ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAE
Sbjct: 560 GADQEDKLRAALEKYSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAE 619
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG +V+ R+E I+ A LD
Sbjct: 620 ADKIFDMLMGDKVEPRREFIEENAVYSTLD 649
>gi|166032886|ref|ZP_02235715.1| hypothetical protein DORFOR_02607 [Dorea formicigenerans ATCC
27755]
gi|166027243|gb|EDR46000.1| DNA gyrase, B subunit [Dorea formicigenerans ATCC 27755]
Length = 643
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 240/505 (47%), Positives = 336/505 (66%), Gaps = 11/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK L V+ + GT++ F PD ++F T I FD++ + R RE+AF
Sbjct: 145 YRQRYERGKVAKKL--EVIGECEPGKTGTKVTFLPDGEIFETTI-FDYSILQQRFREMAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKD-VDGITI 121
L L I LR D P++ + + GG++E+V++LN PL++ + + + V+ +++
Sbjct: 202 LTKGLKIVLR--DERPQEPIEKTFHYEGGIKEFVEYLNRSTTPLYEQIIYCEGIVNNVSV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q +D+Y++ G+ N+I T +GGTHI G + +LT+T N +K+K +KD + +L+
Sbjct: 260 EVAMQH-NDSYNENSYGFVNNITTPEGGTHIVGFRNALTKTFNDYARKNKLLKDNEPNLT 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT IISV++ +P+FEGQTK +LGN E R VD V E L +LE +P V
Sbjct: 319 GEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDNVVSEQLQIFLEQNPQVAKVT 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KS+ A +A AA++ARDL R+KS L SLPGKLADCS PE+ EI+IVEGDSAGGS
Sbjct: 379 VEKSVMAQRAREAARKARDLTRRKSALDGMSLPGKLADCSDKNPEKCEIYIVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK RDR QAILPLRGKILNVE+ +Y N EI+ +I A G G+ EDF LRYH
Sbjct: 439 AKTARDRATQAILPLRGKILNVEKARLDRIYGNAEIKAMITAFGTGIH-EDFDISKLRYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TLLLTF YR+ L EG +Y+ PPLYK+ER K+V Y Y D E
Sbjct: 498 KIIIMTDADVDGAHISTLLLTFMYRFMPDLIKEGYVYLAQPPLYKLERNKKVWYAYSDEE 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED--AAEANVVFS 479
L + + IQR+KGLGEM QLW+TT++PE R+L ++ ++D A+E ++ F+
Sbjct: 558 LDSILQEVGRDNNNKIQRYKGLGEMDAEQLWDTTMDPEHRVLLRVTMDDETASELDLTFT 617
Query: 480 SLMGARVDTRKELI-QNAANLVNLD 503
+LMG +V+ R+E I +NA + NLD
Sbjct: 618 TLMGDKVEPRREFIEENAQYVQNLD 642
>gi|78707345|gb|ABB46478.1| DNA gyrase subunit B [Acholeplasma equifetale]
gi|78707347|gb|ABB46479.1| DNA gyrase subunit B [Acholeplasma equifetale]
Length = 588
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/479 (48%), Positives = 317/479 (66%), Gaps = 14/479 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QKY RG P L + +R GT F D +FT +D T+ RI++LAF
Sbjct: 122 YEQKYERGIPAYDLK----ELGETNRTGTITTFKADPLIFTETTVYDIETLRTRIQQLAF 177
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
LN +TI+L DS E + Y E F + GG+ EYV++LN +KK +H D++ F K+ DG+T
Sbjct: 178 LNRGITISL--SDSRDENHIYQETFKYDGGIIEYVKFLNQNKKTIHPDIIYFEKEQDGVT 235
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q+ D Y+ + + N+I T +GG H +G K +LTR ++ K KD ++
Sbjct: 236 VEVAMQYV-DTYTPNIHSFTNNISTTEGGMHEDGYKMALTRVISRYADDMKAKKDD--AI 292
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
GE REGLT IISV+ P P+FEGQTKT+LGNPEVR + Q QE L +L +P S
Sbjct: 293 IGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQVTQEALERFLLENPQQAKS 352
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K + A +A +A+++A++L R+KS L KLADC S PE+SE+FIVEGDSAGG
Sbjct: 353 IVEKVIEATRARVASRKAKELARRKSPLDQLDFASKLADCRSKDPEKSELFIVEGDSAGG 412
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRD FQAILPLRGK+LNVE+ M KN+EI N+I+A+G G+ E+F LRY
Sbjct: 413 SAKQGRDSEFQAILPLRGKVLNVEKARIDTMLKNKEIINIIQAIGTGI-SEEFDISKLRY 471
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKI+I+TDADVDGAHIRTLLLTFF+R+ + L + G IY PPLYKV G+ V+Y Y D
Sbjct: 472 HKIVIMTDADVDGAHIRTLLLTFFFRHMRPLIENGHIYAAQPPLYKVSYGRNVKYAYSDE 531
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL ++ S + ++QR+KGLGEM QLW+TT+NPE R L Q+ ++DA EA+ +F+
Sbjct: 532 ELNEITSKLETKP--TLQRYKGLGEMNYEQLWDTTMNPETRTLLQIQLDDAIEADQIFT 588
>gi|269837196|ref|YP_003319424.1| DNA gyrase subunit B [Sphaerobacter thermophilus DSM 20745]
gi|269786459|gb|ACZ38602.1| DNA gyrase, B subunit [Sphaerobacter thermophilus DSM 20745]
Length = 638
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 238/505 (47%), Positives = 338/505 (66%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTL--TCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
Y Q+Y RG+PVT + V P D GT+ F PD +F + + ++ +T+ R RE+
Sbjct: 144 YRQRYERGRPVTPVEQVGEVGP----DEHGTKTTFKPDATIFES-LNYNFDTLMQRFREI 198
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
A+L L I+ R E +D E + ++F GG+ +V+ LN ++ L ++V+G
Sbjct: 199 AYLTKGLQISFRDERTDREMS----FYFDGGIVSFVRHLNRRRQVLQPRPFSVSREVNGN 254
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I++ALQ+ +D +++ +AN+I TIDGGTH+ G KA+LTRT+N +++ +K+ D +
Sbjct: 255 LIEVALQY-NDGVAESTYTFANNINTIDGGTHLTGFKAALTRTINDYARRAGFLKETDEN 313
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSGE VREGLT I+SV++P P+FEGQTK RLGN EV V V + L YL +P
Sbjct: 314 LSGEDVREGLTAIVSVKLPEPQFEGQTKGRLGNAEVAGQVQSVVNDALATYLNENPQAAR 373
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K ++A +A AA++AR+LV++K L + SLPGKLADC P +E++IVEGDSAG
Sbjct: 374 RIVDKCVTAARAREAARKARELVQRKGALDTFSLPGKLADCQERDPARAELYIVEGDSAG 433
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDRRFQA+LPLRGKILNVE+ M +NEEI+ LI ALG + G+ F LR
Sbjct: 434 GSAKQGRDRRFQAVLPLRGKILNVEKARLDRMLQNEEIRALITALGTSI-GDQFDPSKLR 492
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YH+II++TDADVDGAHIRTLLLTFF+R+ ++L +G +Y+ PPLY+++ GK++ Y Y D
Sbjct: 493 YHRIILMTDADVDGAHIRTLLLTFFFRHLESLIVDGRLYIAQPPLYRLQSGKEIHYVYSD 552
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
A+ ++ ++ N + I R+KGLGEM P QLWETT++PE R L Q+ +EDA A+ F
Sbjct: 553 AQRDEIIAAGGPNKTWEIVRYKGLGEMNPEQLWETTMDPENRTLLQVTLEDAVRADETFD 612
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG+ V R+ IQ +A + NLD
Sbjct: 613 MLMGSAVPPRRRFIQMHAREVQNLD 637
>gi|346309520|ref|ZP_08851605.1| DNA gyrase, B subunit [Dorea formicigenerans 4_6_53AFAA]
gi|345898725|gb|EGX68587.1| DNA gyrase, B subunit [Dorea formicigenerans 4_6_53AFAA]
Length = 643
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 240/505 (47%), Positives = 336/505 (66%), Gaps = 11/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK L V+ + GT++ F PD ++F T I FD++ + R RE+AF
Sbjct: 145 YRQRYERGKVAKKL--EVIGECEPGKTGTKVTFLPDGEIFETTI-FDYSILQQRFREMAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKD-VDGITI 121
L L I LR D P++ + + GG++E+V++LN PL++ + + + V+ +++
Sbjct: 202 LTKGLKIVLR--DERPQEPIEKTFHYEGGIKEFVEYLNRSTTPLYEQIIYCEGIVNNVSV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q +D+Y++ G+ N+I T +GGTHI G + +LT+T N +K+K +KD + +L+
Sbjct: 260 EVAMQH-NDSYNENSYGFVNNITTPEGGTHIVGFRNALTKTFNDYARKNKLLKDNEPNLT 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT IISV++ +P+FEGQTK +LGN E R VD V E L +LE +P V
Sbjct: 319 GEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDSVVSEQLQIFLEQNPQVAKVT 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KS+ A +A AA++ARDL R+KS L SLPGKLADCS PE+ EI+IVEGDSAGGS
Sbjct: 379 VEKSVMAQRAREAARKARDLTRRKSALDGMSLPGKLADCSDKNPEKCEIYIVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK RDR QAILPLRGKILNVE+ +Y N EI+ +I A G G+ EDF LRYH
Sbjct: 439 AKTARDRATQAILPLRGKILNVEKARLDRIYGNAEIKAMITAFGTGIH-EDFDISKLRYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TLLLTF YR+ L EG +Y+ PPLYK+ER K+V Y Y D E
Sbjct: 498 KIIIMTDADVDGAHISTLLLTFMYRFMPDLIKEGYVYLAQPPLYKLERNKKVWYAYSDEE 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED--AAEANVVFS 479
L + + IQR+KGLGEM QLW+TT++PE R+L ++ ++D A+E ++ F+
Sbjct: 558 LDSILQEVGRDNNNKIQRYKGLGEMDAEQLWDTTMDPEHRVLLRVTMDDETASELDLTFT 617
Query: 480 SLMGARVDTRKELI-QNAANLVNLD 503
+LMG +V+ R+E I +NA + NLD
Sbjct: 618 TLMGDKVEPRREFIEENAQYVQNLD 642
>gi|150003955|ref|YP_001298699.1| DNA gyrase B subunit [Bacteroides vulgatus ATCC 8482]
gi|294775119|ref|ZP_06740648.1| DNA gyrase, B subunit [Bacteroides vulgatus PC510]
gi|319639808|ref|ZP_07994538.1| B subunit [Bacteroides sp. 3_1_40A]
gi|345518957|ref|ZP_08798390.1| DNA gyrase, B subunit [Bacteroides sp. 4_3_47FAA]
gi|423312902|ref|ZP_17290838.1| DNA gyrase, B subunit [Bacteroides vulgatus CL09T03C04]
gi|149932379|gb|ABR39077.1| DNA gyrase B subunit [Bacteroides vulgatus ATCC 8482]
gi|254833591|gb|EET13900.1| DNA gyrase, B subunit [Bacteroides sp. 4_3_47FAA]
gi|294451163|gb|EFG19634.1| DNA gyrase, B subunit [Bacteroides vulgatus PC510]
gi|317388625|gb|EFV69474.1| B subunit [Bacteroides sp. 3_1_40A]
gi|392686933|gb|EIY80232.1| DNA gyrase, B subunit [Bacteroides vulgatus CL09T03C04]
Length = 654
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/514 (45%), Positives = 331/514 (64%), Gaps = 21/514 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT-TAIQFDHNTIAGRIRELA 61
Y Q+YS G P+ + V V + D GT+ FWPD +FT T +FD + R+RELA
Sbjct: 148 YQQEYSCGHPLYS----VKEVGTADITGTKQTFWPDDTIFTVTEYKFD--ILQARMRELA 201
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAG--GLEEYVQWLNTDKKPL-HDVVGFRKDVDG 118
+LN +TI+L E + + F G++E+V++LN + + L +DV+ + +
Sbjct: 202 YLNKGITISLTDRRIKEEDGSFKKEIFHSDEGVKEFVRFLNRNNEALINDVIYLNTEKNN 261
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I+ A+ + + Y +++ Y N+I TI+GGTH G +++LTR L + +K ++ +
Sbjct: 262 TPIECAIMY-NTGYRESLHSYVNNINTIEGGTHEAGFRSALTRVLKKYAEDTKALEKAKV 320
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+SGE REGL +ISV+V P+FEGQTKT+LGN EV V+Q+V E LT YLE HP
Sbjct: 321 EISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNSEVSGAVNQAVGEALTYYLEEHPKEA 380
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K + A A +AA++AR+ V++KS + LPGKLADCSS PEE E+F+VEGDSA
Sbjct: 381 KQIVDKVILAATARIAARKARESVQRKSPMGGGGLPGKLADCSSRNPEECELFLVEGDSA 440
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFKKE 356
GGSAKQGR R FQAILPLRGKILNVE+ ++++E+ N+I ALG+ GV G D K+
Sbjct: 441 GGSAKQGRSRAFQAILPLRGKILNVEKAMWHKAFESDEVNNIITALGVRFGVDGNDDSKK 500
Query: 357 A----LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ 412
A LRYHK++I+TDADVDG+HI TL++T FYRY + + G +Y+ PPLYK +GK
Sbjct: 501 ANIDKLRYHKVVIMTDADVDGSHIDTLIMTLFYRYMPEIIENGHLYIANPPLYKCSKGKI 560
Query: 413 VQYCYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIE 469
+YCY + + + N +++ QR+KGLGEM P QLWETT+NPE R+LKQ+ I+
Sbjct: 561 SEYCYTEEARQAFIQKYGDGQENGIHT-QRYKGLGEMNPEQLWETTMNPETRILKQVTID 619
Query: 470 DAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
+AA + +FS LMG V R+E I+ A N+D
Sbjct: 620 NAANVDYIFSMLMGDDVAPRREFIEKNATYANID 653
>gi|153854251|ref|ZP_01995550.1| hypothetical protein DORLON_01544 [Dorea longicatena DSM 13814]
gi|149753026|gb|EDM62957.1| DNA gyrase, B subunit [Dorea longicatena DSM 13814]
Length = 643
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/505 (46%), Positives = 338/505 (66%), Gaps = 11/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK + LT V+ +++ GT++ F PD +F T I FD N + R RE+AF
Sbjct: 145 YQQRYERGKVMEKLT--VIGDCEEEKTGTKVTFLPDDTIFETTI-FDFNVLKQRFREMAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKD-VDGITI 121
L L I L+ D E+ + + + GG++E+V +LN PL++ + + + V+ +++
Sbjct: 202 LTKGLKIVLK--DDREEEPKERTFHYEGGIKEFVTYLNRSATPLYEQIIYCEGMVNNVSV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q +D+YSD G+ N+I T +GGTH+ G + ++T+T N +K+K ++D + +LS
Sbjct: 260 EVAMQH-NDSYSDNTYGFVNNITTPEGGTHVVGFRNAITKTFNDYARKNKLLRDNEPNLS 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT IISV++ +P+FEGQTK +LGN E R VD V + L +LE +P V I
Sbjct: 319 GEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDNVVSKQLEIFLEQNPAVGKII 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KS+ + +A AA++ARDL R+KS L + +LPGKLADCS PE EI+IVEGDSAGGS
Sbjct: 379 VEKSVMSQRAREAARKARDLTRRKSALDNMALPGKLADCSDKNPENCEIYIVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK RDR QAILPLRGKILNVE+ +Y N EI+ +I A G G+ EDF LRYH
Sbjct: 439 AKTARDRATQAILPLRGKILNVEKARLDKIYGNAEIKAMITAFGTGIH-EDFDISKLRYH 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TLLLTF YR+ L +G +Y+ PPLYK+E+ K+V Y Y D E
Sbjct: 498 KIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYKLEKNKKVWYAYSDEE 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED--AAEANVVFS 479
L + + + IQR+KGLGEM QLWETT++PE R+L ++ ++D +E ++ F+
Sbjct: 558 LSNIINEVGRDGNNKIQRYKGLGEMDAEQLWETTMDPEHRILLRVTMDDETTSELDLTFT 617
Query: 480 SLMGARVDTRKELI-QNAANLVNLD 503
+LMG +V+ R+E I +NA + NLD
Sbjct: 618 TLMGDKVEPRREFIVENAKYVKNLD 642
>gi|238855510|ref|ZP_04645815.1| DNA gyrase, B subunit [Lactobacillus jensenii 269-3]
gi|260665214|ref|ZP_05866063.1| DNA gyrase, B subunit [Lactobacillus jensenii SJ-7A-US]
gi|313472767|ref|ZP_07813255.1| DNA gyrase, B subunit [Lactobacillus jensenii 1153]
gi|238831876|gb|EEQ24208.1| DNA gyrase, B subunit [Lactobacillus jensenii 269-3]
gi|260560951|gb|EEX26926.1| DNA gyrase, B subunit [Lactobacillus jensenii SJ-7A-US]
gi|313448866|gb|EEQ68253.2| DNA gyrase, B subunit [Lactobacillus jensenii 1153]
Length = 651
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/480 (48%), Positives = 317/480 (66%), Gaps = 10/480 (2%)
Query: 28 RQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKN--QYNE 85
+ GT + F+PD +FT I FD + RI+ELAFLN L + +D KN + +
Sbjct: 177 QHGTIVHFYPDPDIFTETIVFDDKILKKRIQELAFLNKGLKLTF----TDKRKNSAETDV 232
Query: 86 YFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIR 144
Y + GG++EYV +L+ ++ L D V D DGI +++ALQ+ + Y TM+ +AN+I
Sbjct: 233 YHYEGGIKEYVAFLDEKEEKLFDTPVYVEGDYDGINVEVALQYTT-GYKTTMMTFANNIH 291
Query: 145 TIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEG 204
T +GG H G K +LTR +N +K+K KD D +LSGE +REG+T +IS++ PNP+FEG
Sbjct: 292 TYEGGMHEAGFKTALTRVINDYARKAKIFKDSDTNLSGEDIREGMTAVISIKHPNPQFEG 351
Query: 205 QTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQ 264
QTKT+LGN + R VD++ E +++L +P V I+ K A KA +AAKRAR++ R+
Sbjct: 352 QTKTKLGNSDARAAVDKAFSEAFSKFLLENPSVGRKIVEKGQLAEKARIAAKRAREVTRK 411
Query: 265 KSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVE 324
KS L ++LPGKLAD +S PE SE+FIVEGDSAGGSAKQGR R QAILP+RGKILNVE
Sbjct: 412 KSGLEIANLPGKLADNTSNDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVE 471
Query: 325 RKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFF 384
+ + N+EI+ L ALG G G DF + RYHK+II+TDADVDGAHIRTLLLT F
Sbjct: 472 KASMDRILANQEIRTLFTALGTGF-GADFDVKKARYHKLIIMTDADVDGAHIRTLLLTLF 530
Query: 385 YRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLG 444
YRY K + G +Y+ PPLY+V++GK ++Y D EL S + ++QR+KGLG
Sbjct: 531 YRYMKPMIKAGYVYIARPPLYQVKQGKIIKYLDSDEELHDYLGSLQPSPKPTVQRYKGLG 590
Query: 445 EMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 503
EM QLWETT++PE R L ++ + A +A+ VF LMG V R++ I +NA + NLD
Sbjct: 591 EMSADQLWETTMDPENRRLDRVDPKYAEDADAVFEMLMGNEVGPRRDFITKNAKYVENLD 650
>gi|227538317|ref|ZP_03968366.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
gi|227241832|gb|EEI91847.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
Length = 652
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/512 (45%), Positives = 346/512 (67%), Gaps = 17/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y +GKP V + +R GT + F+PD ++FT ++++T++ R+RELAF
Sbjct: 146 FKQEYEKGKP----KYDVKAIGESERTGTTVTFFPDPEIFTMTTVYNYDTLSNRLRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN +LTI +E D + + +F GGL+E+V++L+ +++ L D + G+
Sbjct: 202 LNKGIRLTIVDEREILDDGSFRKDVFFSEGGLQEFVKFLDGNRQSLIPDPIYVEGIKQGV 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++LALQ+ +D YS+ + Y N+I TI+GG+H+ G + LTRTL + S +K+ +
Sbjct: 262 PVELALQY-NDTYSENVHSYVNNINTIEGGSHVAGFRRGLTRTLKKYAEDSGLLKNLKVE 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
++G+ REGLT +ISV+V P+FEGQTKT+LGN EV VD +V E L+ YLE +P
Sbjct: 321 IAGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDVAVGEILSTYLEENPREAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A +A AA++AR++V++K+V+ S LPGKLADCS P + EIF VEGDSAG
Sbjct: 381 IIVQKVVIAAQARAAARKAREMVQRKTVMGGSGLPGKLADCSDNDPHKCEIFFVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK---- 355
G+AKQGRDR+FQAI+PLRGKILNVE+ E +Y+NEEI+N+ ALG+ V D K
Sbjct: 441 GTAKQGRDRKFQAIMPLRGKILNVEKAMEHKIYENEEIKNMFTALGVSVGTPDDAKALNL 500
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
E LRYHKI+I+TDADVDG+HI TL+LTF++RY K L + G +Y+ PPLY V++GK+ QY
Sbjct: 501 EKLRYHKIVIMTDADVDGSHIATLILTFYFRYMKELIENGYVYIATPPLYLVKKGKESQY 560
Query: 416 CYDDAE----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
+ + + ++++K + ++++ +QR+KGLGEM QLW+TT+NPE R L+Q+ I++A
Sbjct: 561 AWTEDQRLQAIQRLKGAGKEDSVH-VQRYKGLGEMNAEQLWDTTMNPEHRTLRQVTIDNA 619
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AE + +FS LMG V R+E I+ A +D
Sbjct: 620 AECDRIFSMLMGDEVAPRREFIEKNARYAKID 651
>gi|399927980|ref|ZP_10785338.1| DNA gyrase subunit B [Myroides injenensis M09-0166]
Length = 646
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/512 (44%), Positives = 336/512 (65%), Gaps = 22/512 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+YS+GK + + V D++GT++ F PD +FT +F + T+AGR+RELAF
Sbjct: 145 YEQEYSQGKALYPVKV----VGETDKKGTQVTFHPDPTIFTQVTEFSYETLAGRLRELAF 200
Query: 63 LNPKLTIALR-----KEDSDPEKNQYNEYFFA-GGLEEYVQWLNTDKKPL-HDVVGFRKD 115
LN LTI L ED P+ +E FF+ GL+E++++L+ ++ P+ DV+ D
Sbjct: 201 LNKGLTITLTDLREINEDGTPK----SEVFFSKDGLKEFIKFLDGNRVPIIGDVISMETD 256
Query: 116 VDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKD 175
+ +++AL + +D YS+ + Y N+I T +GGTH++G + LTRTL S ++
Sbjct: 257 KGEVPVEVALIY-NDTYSENIYSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLEK 315
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
++G+ REGLT IISV+V P+FEGQTKT+LGN EV V Q+V E L YLE HP
Sbjct: 316 LKFEITGDDFREGLTAIISVKVMEPQFEGQTKTKLGNREVVSPVSQAVAEMLEAYLEEHP 375
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
+ I+ K + A +A AAK+AR++V++K+V+ LPGKL+DCS P+ E+F+VEG
Sbjct: 376 NDAKIIVQKVILAAQARHAAKKAREMVQRKTVMVGGGLPGKLSDCSEQDPKLCEVFLVEG 435
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK 355
DSAGG+AK+GRDR FQAILPLRGKILNVE+ +++NEEI+N+ ALG+ + E+ K
Sbjct: 436 DSAGGTAKEGRDRNFQAILPLRGKILNVEKAMGHKVFENEEIRNIFTALGVTIGTEEDSK 495
Query: 356 ----EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK 411
E LRYHK++I+ DADVDG+HI TL+LTFF+RY + L + +++ PPLY V++G
Sbjct: 496 ALNLEKLRYHKVVIMCDADVDGSHIATLILTFFFRYMRGLIENEHVFIATPPLYLVKKGN 555
Query: 412 QVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
+ +Y + D E ++ S A ++QR+KGLGEM QLW+TT+NPE R+L+++ I++
Sbjct: 556 KKEYAWTDEERIELMEQMGSGA--TVQRYKGLGEMNAEQLWDTTMNPEHRILRKVTIDNL 613
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ VFS LMG V R+E I+ A +D
Sbjct: 614 QEADRVFSMLMGDEVPPRREFIEQNATYAKID 645
>gi|281424989|ref|ZP_06255902.1| DNA gyrase, B subunit [Prevotella oris F0302]
gi|299142183|ref|ZP_07035316.1| DNA gyrase, B subunit [Prevotella oris C735]
gi|281400833|gb|EFB31664.1| DNA gyrase, B subunit [Prevotella oris F0302]
gi|298576272|gb|EFI48145.1| DNA gyrase, B subunit [Prevotella oris C735]
Length = 656
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 235/517 (45%), Positives = 340/517 (65%), Gaps = 23/517 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + V ++GTR +FWPD VFTT + + +A R+RELA+
Sbjct: 146 YQQEYEKGKPLYPVKV----VGETTKRGTRQQFWPDPTVFTTTT-YKWDIVASRMRELAY 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
LN + I L + E E F A GL+E+V++++ + L D V+ + + GI
Sbjct: 201 LNAGIRITLTDLRPNEEGKTRQEVFHAKDGLKEFVRYVDRHRTHLFDDVIYLKTEKQGIP 260
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKDK 176
I++A+ + +D YS+ + Y N+I TI+GGTH+ G +A+LTRTL + +K ++
Sbjct: 261 IEVAIMYNTD-YSENIHSYVNNINTIEGGTHLTGFRAALTRTLKAYADAEPTIAKQIEKA 319
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
I ++GE REGLT +IS++V P+FEGQTKT+LGN EV V Q+V E L+ YLE HP
Sbjct: 320 KIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVSGAVQQAVGEALSNYLEEHPI 379
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
I K + A A +AA++AR+ V++KSV+ LPGKLADCS+ P+E EIF+VEGD
Sbjct: 380 EAKKICEKVVLAATARIAARKARESVQRKSVMTGGGLPGKLADCSNKDPKECEIFLVEGD 439
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFK 354
SAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV+GED +
Sbjct: 440 SAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAESVMNIIQSIGVRFGVEGEDDR 499
Query: 355 K---EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK 411
+ + LRY KIII+TDADVDG+HI TL++T FYR+ + ++G +Y+ PPLYK K
Sbjct: 500 EANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPKVIEDGHLYIATPPLYKCTYKK 559
Query: 412 QVQYCYDDAEL-----KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQL 466
+YCY + + K V+ +L++ QR+KGLGEM P QLWETT++P+ R+LKQ+
Sbjct: 560 ASEYCYTEQQRQAFIDKYVEGKEDDKSLHT-QRYKGLGEMNPEQLWETTMDPKSRLLKQV 618
Query: 467 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
I++AAEA+ +FS LMG V+ R+E I+ A N+D
Sbjct: 619 TIQNAAEADEIFSMLMGDDVEPRREFIEQNATYANID 655
>gi|423326757|ref|ZP_17304565.1| DNA gyrase, B subunit [Myroides odoratimimus CCUG 3837]
gi|404608114|gb|EKB07597.1| DNA gyrase, B subunit [Myroides odoratimimus CCUG 3837]
Length = 646
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/512 (44%), Positives = 336/512 (65%), Gaps = 22/512 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+YSRGK + + + D++GT + F PD +FT ++F ++T+AGR+REL+F
Sbjct: 145 YEQEYSRGKALFPVKV----IGETDKRGTSVTFKPDHTIFTQTLEFSYDTLAGRLRELSF 200
Query: 63 LNPKLTIALR-----KEDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKD 115
LN L I L +E+ +P+ +E FF+ GL+E++++L+ + P+ DV+ D
Sbjct: 201 LNKGLKITLTDKRVIEENGEPK----HEVFFSKEGLKEFIKFLDGSRVPIIEDVISMELD 256
Query: 116 VDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKD 175
I +++AL + +D Y++ + Y N+I T +GGTH++G + LTRTL S +
Sbjct: 257 KGEIPVEVALVY-NDTYAENIYSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGMLDK 315
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
++G+ REGLT I+SV+V P+FEGQTKT+LGN EV V Q+V E L YLE HP
Sbjct: 316 LKFEITGDDFREGLTAIVSVKVMEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEEHP 375
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
+ I+ K + A +A AAK+AR++V++K+V+ LPGKL+DCS + E+F+VEG
Sbjct: 376 NDAKIIVQKVILAAQARHAAKKAREMVQRKTVMVGGGLPGKLSDCSEQDASKCEVFLVEG 435
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK 355
DSAGG+AKQGRDR FQAILPLRGKILNVE+ +++NEEI+N+ ALG+ + E+ K
Sbjct: 436 DSAGGTAKQGRDRNFQAILPLRGKILNVEKAMGHKVFENEEIKNIFTALGVTMGTEEDSK 495
Query: 356 ----EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK 411
E LRYHK++I+ DADVDG+HI TL+LTFF+RY + L + G +Y+ PPLY V++G+
Sbjct: 496 ALNLEKLRYHKVVIMCDADVDGSHIATLILTFFFRYMRGLIENGYVYIATPPLYMVKKGQ 555
Query: 412 QVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
+ +Y + D E ++ S + S+QR+KGLGEM QLW+TT+NPE R+L+Q+ I+
Sbjct: 556 RKEYAWTDEERLELVEKMGSGS--SVQRYKGLGEMNAEQLWDTTMNPEHRILRQVTIDSL 613
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ VFS LMG V R++ I+ A +D
Sbjct: 614 QEADRVFSMLMGDEVPPRRDFIEKNATYAKID 645
>gi|365960414|ref|YP_004941981.1| DNA gyrase subunit B [Flavobacterium columnare ATCC 49512]
gi|365737095|gb|AEW86188.1| DNA gyrase subunit B [Flavobacterium columnare ATCC 49512]
Length = 646
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/508 (45%), Positives = 328/508 (64%), Gaps = 14/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK V + + D++GT + F PD +F +++ ++T+A R+RELAF
Sbjct: 145 YEQEYERGKA----QYPVKQIGTTDKRGTTVWFKPDGTIFQQTLEYSYDTLAARMRELAF 200
Query: 63 LNPKLTIALR-KEDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN +TI L K D E E F + GL+E+V++L+ ++ P+ V+ D I
Sbjct: 201 LNKGITITLTDKRGQDKEGKYLGETFHSKEGLKEFVKFLDGNRVPIIGHVISMENDKGEI 260
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++AL + +D+YS+ + Y N+I T +GGTH++G + LTRTL S +
Sbjct: 261 PVEVALIY-NDSYSENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLDKLKFE 319
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT IISV+V P+FEGQTKT+LGN EV V Q+V E L YLE +P+
Sbjct: 320 ISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPNDAK 379
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A +A AAK+AR++V++K+V+ LPGKL+DCS P + EIF+VEGDSAG
Sbjct: 380 IIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPTKCEIFLVEGDSAG 439
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK---- 355
G+AKQGRDR FQAILPLRGKILNVE+ +++NEEI+N+ ALG+ V D K
Sbjct: 440 GTAKQGRDRNFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTADDSKALNL 499
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
E LRYHK++I+ DAD+DG+HI TL+LTFF+R+ K L +EG +Y+ PPLY V++G + +Y
Sbjct: 500 EKLRYHKVVIMCDADIDGSHISTLILTFFFRFMKELIEEGHVYIATPPLYLVKKGNKKEY 559
Query: 416 CYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+D+ + + A +IQR+KGLGEM QLWETTLNP R L+Q+ I+ EA+
Sbjct: 560 AWDEKQRDAINEKMGGGA--NIQRYKGLGEMNAEQLWETTLNPGYRTLRQVTIDSLTEAD 617
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
VFS LMG V R+E I+ A N+D
Sbjct: 618 RVFSMLMGDEVPPRREFIEKNAIYANID 645
>gi|395218293|ref|ZP_10401952.1| DNA gyrase subunit B [Pontibacter sp. BAB1700]
gi|394454663|gb|EJF09280.1| DNA gyrase subunit B [Pontibacter sp. BAB1700]
Length = 652
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/487 (47%), Positives = 330/487 (67%), Gaps = 29/487 (5%)
Query: 35 FWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR--KEDSDPEKNQYNEYFFAGGL 92
F PD +FTT ++ ++TIA R+REL+FLN + I L +E + + + ++ GGL
Sbjct: 176 FQPDASIFTTT-EYKYDTIASRLRELSFLNKGIRINLTDLRETGEDGQPLSDSFYSEGGL 234
Query: 93 EEYVQWLNTDKK-----PLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTID 147
+E+V +L+ ++ P+H + +G+ +++ALQ+ + +Y++ + Y N+I TI+
Sbjct: 235 KEFVAYLDETRENLIPEPIH----IESEKNGVPVEIALQYNT-SYTENIFSYVNNINTIE 289
Query: 148 GGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTK 207
GGTH+ G + +LTRTL + KS + I ++G+ REGLT +ISV+V P+FEGQTK
Sbjct: 290 GGTHVGGFRRALTRTLKAYADKSGMLDKLKIDIAGDDFREGLTAVISVKVQEPQFEGQTK 349
Query: 208 TRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSV 267
T+LGN +V VD +V E L ++LE +P +I+ K + A +A AA++AR++V++K+V
Sbjct: 350 TKLGNSDVGGAVDTAVGEMLNQFLEENPKEARTIVQKVILAAQARNAARKAREMVQRKNV 409
Query: 268 LRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKD 327
L S+SLPGKLADCS PE EI++VEGDSAGGSAKQGR+R FQAILPLRGKILNVE+
Sbjct: 410 LSSTSLPGKLADCSDNNPENCEIYLVEGDSAGGSAKQGRNRMFQAILPLRGKILNVEKAQ 469
Query: 328 EAAMYKNEEIQNLIRALGLGVKGEDFKK----EALRYHKIIILTDADVDGAHIRTLLLTF 383
E +Y+NEEI+N+I ALG+ + +K E LRYH+III+TDADVDG+HIRTL+LTF
Sbjct: 470 EHRIYENEEIKNMITALGVSFGTAEGEKALNMEKLRYHRIIIMTDADVDGSHIRTLILTF 529
Query: 384 FYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD-------AELKKVKSSFPSNALYS 436
F+RY K L + G IY+ +PPLY V++GK+ +YC+ + AEL K K
Sbjct: 530 FFRYMKELIENGYIYIALPPLYLVKKGKEERYCWSEQDRIDAIAELGKGKEDS-----VG 584
Query: 437 IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNA 496
+QR+KGLGEM P QLW TT++PE R LK++ IE AAEA+ +FS LMG V R++ I+
Sbjct: 585 VQRYKGLGEMNPEQLWNTTMDPETRSLKRVTIESAAEADHLFSMLMGDEVGPRRDFIERN 644
Query: 497 ANLVNLD 503
A +D
Sbjct: 645 AKYARVD 651
>gi|441497053|ref|ZP_20979274.1| DNA gyrase subunit B [Fulvivirga imtechensis AK7]
gi|441439184|gb|ELR72507.1| DNA gyrase subunit B [Fulvivirga imtechensis AK7]
Length = 651
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/511 (45%), Positives = 335/511 (65%), Gaps = 16/511 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y G P + V + D+ GT I F PD +F ++ + T+A R+RELA+
Sbjct: 146 YEQEYKIGVPQYS----VREIGDTDKTGTTITFQPDSSIFNVT-EYTYETVASRLRELAY 200
Query: 63 LNPKLTIALRKEDSDPE--KNQYNEYFFAGGLEEYVQWLN-TDKKPLHDVVGFRKDVDGI 119
LN + I L+ + K + +++F GGL+E+VQ+L+ T +K + + + +
Sbjct: 201 LNAGIRIHLKDLRDLDDDGKPKSDDFFSEGGLKEFVQYLDSTREKLIPEPIYMDSEKGEN 260
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+ +A+ + + +YS+ ++ Y N+I TI+GGTH+ G + +LTRTL + KS + +
Sbjct: 261 PVQVAMSYNT-SYSENVVSYVNNINTIEGGTHVAGFRRALTRTLKAYADKSGLLDKVKVE 319
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT +ISV+V P+FEGQTKT+LGN +V VD V E L YLE +P
Sbjct: 320 ISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNSDVSGSVDTVVGEMLNNYLEENPKEAK 379
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
SI+ K + A +A AA++AR++V++K+VL + LPGKLADCS+ P SE+++VEGDSAG
Sbjct: 380 SIVQKVIIAAQARHAARKAREMVQRKNVLSGTGLPGKLADCSNNDPTISELYLVEGDSAG 439
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE--- 356
GSAKQGRDR FQAILPLRGKILNVE+ E +Y+NEEI+N+I ALG+ E+ +K
Sbjct: 440 GSAKQGRDRNFQAILPLRGKILNVEKAQEHKIYENEEIKNMITALGVSFGTEEDEKALNM 499
Query: 357 -ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
LRYHKIII+TDADVDG+HIRTL+LTFF+RY L ++G +Y+ +PPLY+++RG+ +Y
Sbjct: 500 TKLRYHKIIIMTDADVDGSHIRTLILTFFFRYMHALIEKGYVYIALPPLYQLKRGRDERY 559
Query: 416 CYDDAELKKVKSSFPSNA---LYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
C+ + E K+ +QR+KGLGEM P QLW TT++PE R LK++ IE AA
Sbjct: 560 CWTEEERMKLIKEMAGEGKEESVGVQRYKGLGEMNPEQLWTTTMDPENRSLKRVTIESAA 619
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ +FS LMG V R+E I+ A +D
Sbjct: 620 EADHLFSMLMGDEVAPRREFIERNAKYAKVD 650
>gi|281421058|ref|ZP_06252057.1| DNA gyrase, B subunit [Prevotella copri DSM 18205]
gi|281404976|gb|EFB35656.1| DNA gyrase, B subunit [Prevotella copri DSM 18205]
Length = 656
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 235/517 (45%), Positives = 339/517 (65%), Gaps = 23/517 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + V +++GTR +FWPD +FT + + + IA R+RELAF
Sbjct: 146 YQQEYEKGKPLYPVKV----VGETNKRGTRQQFWPDPTIFTHTV-YKWDIIANRMRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
LN + I LR D E + F A GL+E+V++++ + L D V+ + + GI
Sbjct: 201 LNAGIKITLRDLRPDEEGKTKEQVFHAKDGLKEFVRYVDRHRTHLFDDVIYLKTEKQGIP 260
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKDK 176
I++A+ + +D YS+ + Y N+I TI+GGTH+ G + +LTRTL + + SK ++
Sbjct: 261 IEIAVMYNTD-YSENIHSYVNNINTIEGGTHLTGFRMALTRTLKAYAEADPTISKQIEKA 319
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
+ ++ E REGLT +IS++V P+FEGQTKT+LGN EV+ V Q+V E L++YLE HPD
Sbjct: 320 KVEIAPEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVQGAVQQAVNEALSDYLEEHPD 379
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
I K + A A +AA++AR+ V++K+ + LPGKLADCS P+E EIF+VEGD
Sbjct: 380 EAKRICEKVVLAATARIAARKARESVQRKNFMTGGGLPGKLADCSMKDPKECEIFLVEGD 439
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFK 354
SAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV GED K
Sbjct: 440 SAGGSAKQGRDRFRQAILPLRGKILNVEKVQWHKVFEAESVMNIIQSIGVRFGVDGEDSK 499
Query: 355 K---EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE-RG 410
+ + LRY KIII+TDADVDG+HI TL++T FYR+ + +EG +Y+ PPLYK R
Sbjct: 500 EANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPKVIEEGHLYIATPPLYKCTYRS 559
Query: 411 KQVQYCYDD----AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQL 466
K +YCY + A + K +++ QR+KGLGEM P QLWETT++P R+LKQ+
Sbjct: 560 KVSEYCYTEQQRQAFIDKYGDGVEDKNIHT-QRYKGLGEMNPEQLWETTMDPSTRLLKQV 618
Query: 467 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
IE+AA+A+ +FS LMG V+ R+E I+ A N+D
Sbjct: 619 TIENAAQADEIFSMLMGDDVEPRREFIEQNATYANID 655
>gi|366089076|ref|ZP_09455549.1| DNA gyrase subunit B [Lactobacillus acidipiscis KCTC 13900]
Length = 652
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 243/505 (48%), Positives = 334/505 (66%), Gaps = 12/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y ++ GK T L HV+ S+ GT++ F PD +FT +D + RIRELAF
Sbjct: 155 YAMDFAYGKVKTQL--HVIAQTSEHTHGTKVHFKPDTDIFTETHIYDIKVLTTRIRELAF 212
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGI 119
LN KLTIA D PEK + E+ +AGG++ YV++LN K+ L + V +++GI
Sbjct: 213 LNKGLKLTIA----DQRPEKPTFEEFHYAGGIKHYVEFLNKGKEVLFPEPVYVEGEMNGI 268
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
T++++LQ+ D +S+ +L + N+I T +GGTH G K +LTR +N +K +KD D +
Sbjct: 269 TVEVSLQYTDDFHSN-LLTFTNNIHTYEGGTHEAGFKTALTRVINDYARKQGILKDNDDN 327
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSGE VREG+T ++SV+ P+P+FEGQTKT+LGN + R D+ E ++++ +P
Sbjct: 328 LSGEDVREGITAVVSVKHPDPQFEGQTKTKLGNSDARTATDKLFSETFSQFMYENPTTAK 387
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A KA +AAKRAR++ R+K+ L S+LPGKLAD +S PE SE+FIVEGDSAG
Sbjct: 388 QIVEKGSLAAKARVAAKRAREVTRKKNGLEISNLPGKLADNTSKDPEISELFIVEGDSAG 447
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGR R QAILP+RGKILNVE+ + NEEI++L ALG G GE+F
Sbjct: 448 GSAKQGRSRLTQAILPIRGKILNVEKASLDRILANEEIRSLFTALGTGF-GEEFDVSKAN 506
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLT FYR+ K + D G +Y+ PPLY+V +GK ++Y D
Sbjct: 507 YHKLIIMTDADVDGAHIRTLLLTLFYRFMKPMIDAGYVYIAQPPLYQVRQGKMIRYIDSD 566
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+ + S P + +IQR+KGLGEM QLW+TT+NPE R + ++ + DA EAN VF
Sbjct: 567 EELQDILSQLPPSPKPAIQRYKGLGEMDADQLWKTTMNPENRRMMRVSLSDAEEANQVFE 626
Query: 480 SLMGARVDTRKELI-QNAANLVNLD 503
LMG V R++ I +NA + NLD
Sbjct: 627 MLMGDHVGPRRQFIEENATYVENLD 651
>gi|387784628|ref|YP_006070711.1| DNA gyrase subunit B [Streptococcus salivarius JIM8777]
gi|338745510|emb|CCB95876.1| DNA gyrase subunit B [Streptococcus salivarius JIM8777]
Length = 650
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/510 (44%), Positives = 344/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG V L + ++ GT + F PD ++F +FD +A RI+ELAF
Sbjct: 150 HFQEYKRGVVVADLAV----IGETEKHGTTVHFTPDPEIFQETTEFDFGKLAKRIQELAF 205
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGI 119
LN L I++ ++E + EK+ Y + GG+ YV+++N +K + D + ++DGI
Sbjct: 206 LNKGLRISITDKREGLEQEKH----YHYEGGITSYVKYINENKDVIFDEPIYTDGEMDGI 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N +++K +K+KD +
Sbjct: 262 SVEVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKILKEKDDN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+G+ VREGLT IISV+ PNP+FEGQTKT+LGN EV K+ ++ E L+ +L +P +
Sbjct: 321 LTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEALSRFLLENPAIAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS E +E+FIVEGDSAG
Sbjct: 381 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G +F R
Sbjct: 441 GSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GAEFDVSKAR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYD 418
YHK++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y
Sbjct: 500 YHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQP 559
Query: 419 DAELK-KVKSSFPSNALY----SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
A+ + K++++ ++ ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAE
Sbjct: 560 GADQEDKLRAALEKYSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAE 619
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG +V+ R+E I+ A LD
Sbjct: 620 ADKIFDMLMGDKVEPRREFIEENAVYSTLD 649
>gi|340621962|ref|YP_004740414.1| DNA gyrase subunit B [Capnocytophaga canimorsus Cc5]
gi|339902228|gb|AEK23307.1| DNA gyrase subunit B [Capnocytophaga canimorsus Cc5]
Length = 652
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/514 (44%), Positives = 339/514 (65%), Gaps = 20/514 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RGK + V V ++GT + F PD +F +++ ++T+A R+RELAF
Sbjct: 145 WQQEYERGK----VLYPVKQVGDTQKRGTTVTFQPDDLIFQQTLEYKYDTLATRMRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQY-NEYFFA-GGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN +TI L + E ++ +E F++ GL+E++++L+ ++ + +V+ + + I
Sbjct: 201 LNRGITITLTDKREREENGEFKSETFYSENGLKEFIRYLDGNRPAIISNVIAMEGEKNEI 260
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL----NSLGKKSKTVKD 175
+++A+ + +D+YS+ + Y N+I T +GGTH+EG + LTRTL +S G K KD
Sbjct: 261 PVEVAMVY-NDSYSENLHSYVNNINTHEGGTHLEGFRRGLTRTLKKYADSSGLLEKMSKD 319
Query: 176 KD--ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLEL 233
K + +SGE REGLT I+SV+V P+FEGQTKT+LGN EV VV Q+V E L YLE
Sbjct: 320 KKNPVQISGEDFREGLTAIVSVKVAEPQFEGQTKTKLGNSEVLAVVSQAVSEMLEAYLEE 379
Query: 234 HPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIV 293
HP+ I+ K + A +A AA++AR+LV++K+V+ LPGKL+DCS PE EIF+V
Sbjct: 380 HPNDAKVIVEKVIIAAQARHAARKARELVQRKTVMSGGGLPGKLSDCSEQNPELCEIFLV 439
Query: 294 EGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDF 353
EGDSAGG+AKQGRDR FQAILPL+GKILNVE+ ++ +EEI+N+ ALG+ + ED
Sbjct: 440 EGDSAGGTAKQGRDRNFQAILPLKGKILNVEKAMHHKVFDSEEIKNIFTALGVTIGTEDD 499
Query: 354 KK----EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVER 409
K E LRYHK++I+ DADVDG+HI TL+LTFF+RY + L ++G +Y+ PPLY V++
Sbjct: 500 AKALNLEKLRYHKVVIMCDADVDGSHITTLILTFFFRYMRDLIEKGYVYIATPPLYLVKK 559
Query: 410 GKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIE 469
G + Y ++D E + + +IQR+KGLGEM QLWETT+NP+ R L+Q+ IE
Sbjct: 560 GNKKAYAWNDKERDALSEEYGQGT--NIQRYKGLGEMNAEQLWETTMNPQFRTLRQVTIE 617
Query: 470 DAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
+ +EA+ +FS LMG V R+E I+ A +D
Sbjct: 618 NGSEADRIFSMLMGDDVPPRREFIEKNAKYAKID 651
>gi|157363918|ref|YP_001470685.1| DNA gyrase subunit B [Thermotoga lettingae TMO]
gi|157314522|gb|ABV33621.1| DNA gyrase, B subunit [Thermotoga lettingae TMO]
Length = 630
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/509 (45%), Positives = 328/509 (64%), Gaps = 21/509 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+QKYSRG P C V + D+QGT +RF PD Q+F+ ++FD + I ++RELAF
Sbjct: 139 YYQKYSRGFP----QCEVTVIGETDKQGTIVRFKPDDQIFSI-LKFDPDLIENKLRELAF 193
Query: 63 LNPKLTIALRKEDSDPEKNQYNEY----FFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDG 118
LNP++ I ++ NEY + GGL EY ++L + +KP+H+ + ++D
Sbjct: 194 LNPQVKIIF--------EDLANEYTVTMHYEGGLREYARYLASGRKPIHETIEVSGELDE 245
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I + +A+ + + + YAN+IRTID GTH+ K + T+ LN + +K KD
Sbjct: 246 IIVKIAIMYTDSYEEEKIYSYANNIRTIDHGTHVTAFKNTFTKMLNEYARSLGILK-KDE 304
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
S SGE VREGL I++V + PEFEGQTK++LG+ V + ++E L+EY E++ VL
Sbjct: 305 SFSGEDVREGLIAIVTVLMKEPEFEGQTKSKLGSESAGIAVSRILKEKLSEYFEVNKQVL 364
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
IL K L ++A AA++AR+L R+K+ + + SLPGKLADC S+ E SE+FIVEGDSA
Sbjct: 365 KVILEKVLKTMRAREAARKARELARRKNAMENLSLPGKLADCVSSNVENSELFIVEGDSA 424
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQ RDR +QAILPLRGKILNVE+ + NE+I+++I A+G G+ G+ F L
Sbjct: 425 GGSAKQARDREYQAILPLRGKILNVEKSSMQKLLANEQIKDIIVAVGTGI-GDSFDSSKL 483
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RY KIII+TDAD+DGAHIRTLLLTFF+RY K L ++G IY+ VPPLYKV Y Y
Sbjct: 484 RYGKIIIMTDADIDGAHIRTLLLTFFFRYMKPLIEDGRIYIAVPPLYKVSFSSNSVYVYT 543
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
+ + + ++ +QR+KGLGEM P QLWETT+NPE R L Q+ IE+A EA+ +F
Sbjct: 544 EEDFQALRRELGEERKLEVQRYKGLGEMNPEQLWETTMNPETRKLIQVNIENAEEADALF 603
Query: 479 SSLMGARVDTRKELIQNAANLVNLDHLDI 507
LMG R+ I+ A + + +LD+
Sbjct: 604 EILMGESPSERRRFIERHA--LKVTYLDV 630
>gi|116493579|ref|YP_805313.1| DNA gyrase subunit B [Lactobacillus casei ATCC 334]
gi|116103729|gb|ABJ68871.1| DNA gyrase subunit B [Lactobacillus casei ATCC 334]
Length = 653
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/506 (46%), Positives = 325/506 (64%), Gaps = 9/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ + RGK + V+ + GT++ F PD +FT FD + RIRELAF
Sbjct: 154 YYIDFIRGK--VNMPMKVIGTAPEHEHGTKVHFLPDPDIFTEIRTFDDKILTTRIRELAF 211
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP--LHDVVGFRKDVDGIT 120
LN L + D ++ + + GGL+ YV +L T+KK L + + GIT
Sbjct: 212 LNKGLKLTF--TDKRAATHEKLVFHYEGGLKSYVDFL-TEKKENLLQEPIYVEGQDKGIT 268
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++ALQ+ +D Y T+L +AN+I T +GGTH G K +LTR +N ++S +KD D L
Sbjct: 269 VEVALQYTND-YHSTLLTFANNIHTYEGGTHETGFKTALTRVINDYARRSGALKDSDDPL 327
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ VREGLT ++SV+ P+P+FEGQTKT+LGN + R VVD++ ++ ++L HP
Sbjct: 328 SGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDARTVVDRTFSDHFNKFLMEHPADGKL 387
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K++ A KA LAAKRAR++ R+KS L S+LPGKLAD +S PE SE+FIVEGDSAGG
Sbjct: 388 IIDKAMLASKARLAAKRAREVTRKKSGLEISNLPGKLADNTSKDPEISELFIVEGDSAGG 447
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GR R QAILP+RGKILNVE+ + NEEI+ L A+G G G+DF RY
Sbjct: 448 SAKSGRSRLTQAILPIRGKILNVEKASMERILANEEIRTLFTAMGTGF-GQDFDINKARY 506
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK+II+TDADVDGAHIRTLLLT YRY + + D G +Y+ PPLY++ +GK QY D
Sbjct: 507 HKLIIMTDADVDGAHIRTLLLTLIYRYMRPVLDAGYVYIAQPPLYRLRQGKMTQYIDSDE 566
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+ + P + IQR+KGLGEM QLWETT++P+ R L ++ +DA A+ VF
Sbjct: 567 ELQDILGQLPPSPKPEIQRYKGLGEMDANQLWETTMDPDNRRLLRVSPKDAEAADGVFEM 626
Query: 481 LMGARVDTRKELIQNAANLVNLDHLD 506
LMG V+ R++ I++ A V+ +++D
Sbjct: 627 LMGDHVEPRRKFIEDNAVFVDPNNID 652
>gi|418017328|ref|ZP_12656887.1| DNA gyrase subunit B [Streptococcus salivarius M18]
gi|345528021|gb|EGX31329.1| DNA gyrase subunit B [Streptococcus salivarius M18]
Length = 650
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/510 (44%), Positives = 344/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG V L + ++ GT + F PD ++F +FD +A RI+ELAF
Sbjct: 150 HFQEYKRGVVVADLAV----IGETEKHGTTVHFTPDPEIFQETTEFDFGKLAKRIQELAF 205
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGI 119
LN L I++ ++E + EK+ Y + GG+ YV+++N +K + D + ++DGI
Sbjct: 206 LNKGLRISITDKREGLEQEKH----YHYEGGITSYVKYINENKDVIFDEPIYTDGEMDGI 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N +++K +K+KD +
Sbjct: 262 SVEVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKILKEKDDN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+G+ VREGLT IISV+ PNP+FEGQTKT+LGN EV K+ ++ E L+ +L +P +
Sbjct: 321 LTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEALSRFLLENPAIAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS E +E+FIVEGDSAG
Sbjct: 381 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G +F R
Sbjct: 441 GSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GAEFDVSKAR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYD 418
YHK++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y
Sbjct: 500 YHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLESGYVYIAQPPIYGVKVGSEIKEYIQP 559
Query: 419 DAELK-KVKSSFPSNALY----SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
A+ + K++++ ++ ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAE
Sbjct: 560 GADQEDKLRAALEKYSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAE 619
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG +V+ R+E I+ A LD
Sbjct: 620 ADKIFDMLMGDKVEPRREFIEENAVYSTLD 649
>gi|227533501|ref|ZP_03963550.1| DNA gyrase, B subunit [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|227188830|gb|EEI68897.1| DNA gyrase, B subunit [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
Length = 653
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 235/506 (46%), Positives = 325/506 (64%), Gaps = 9/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ + RGK T + V+ + GT++ F PD +FT FD + RIRELAF
Sbjct: 154 YYIDFIRGKVNTPM--KVIGTAPEHEHGTKVHFLPDPDIFTEIRTFDDKILTTRIRELAF 211
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP--LHDVVGFRKDVDGIT 120
LN L + D ++ + + GGL+ YV +L T+KK L + + GIT
Sbjct: 212 LNKGLKLTF--TDKRAATHEKLVFHYEGGLKSYVDFL-TEKKENLLQEPIYVEGQDKGIT 268
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
++ ALQ+ +D Y T+L +AN+I T +GGTH G K +LTR +N ++S +KD D L
Sbjct: 269 VEFALQYTND-YHSTLLTFANNIHTYEGGTHETGFKTALTRVINDYARRSGALKDSDDPL 327
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ VREGLT ++SV+ P+P+FEGQTKT+LGN + R VVD++ ++ ++L HP
Sbjct: 328 SGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDARTVVDRTFSDHFNKFLMEHPADGKL 387
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K++ A KA LAAKRAR++ R+KS L S+LPGKLAD +S PE SE+FIVEGDSAGG
Sbjct: 388 IIDKAMLASKARLAAKRAREVTRKKSGLEISNLPGKLADNTSKDPEISELFIVEGDSAGG 447
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GR R QAILP+RGKILNVE+ + NEEI+ L A+G G G+DF RY
Sbjct: 448 SAKSGRSRLTQAILPIRGKILNVEKASMERILANEEIRTLFTAMGTGF-GQDFDINKARY 506
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK+II+TDADVDGAHIRTLLLT YRY + + D G +Y+ PPLY++ +GK QY D
Sbjct: 507 HKLIIMTDADVDGAHIRTLLLTLIYRYMRPVLDAGYVYIAQPPLYRLRQGKMTQYIDSDE 566
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+ + P + IQR+KGLGEM QLWETT++P+ R L ++ +DA A+ VF
Sbjct: 567 ELQDILGQLPPSPKPEIQRYKGLGEMDANQLWETTMDPDNRRLLRVSPKDAEAADGVFEM 626
Query: 481 LMGARVDTRKELIQNAANLVNLDHLD 506
LMG V+ R++ I++ A V+ +++D
Sbjct: 627 LMGDHVEPRRKFIEDNAVFVDPNNID 652
>gi|110598305|ref|ZP_01386580.1| DNA gyrase, B subunit [Chlorobium ferrooxidans DSM 13031]
gi|110340113|gb|EAT58613.1| DNA gyrase, B subunit [Chlorobium ferrooxidans DSM 13031]
Length = 649
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 238/507 (46%), Positives = 336/507 (66%), Gaps = 24/507 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++ RG P V + D++GT+ F PD Q+F T +F + I R+RELAF
Sbjct: 153 YFQRFERGIP----QGDVRVIGKTDKKGTKTTFMPDHQIFKTT-EFRKDIIIDRMRELAF 207
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQW-----LNTDKKPLHDVVGFRKDVD 117
LN +L+I ++ + E + + GG++E+VQ+ +N K+P++ + G R D
Sbjct: 208 LNKELSITVQDTEGIDEI-----FHYVGGIKEFVQFTDQNRINLLKEPIY-LYGER---D 258
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
+++ALQ+ +D+Y + + Y N+I T +GGTH+ G + +LTRTLN+ +K+ +K+
Sbjct: 259 STIVEIALQY-NDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNAYAQKNDLLKNLK 317
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+SL+G+ +EGLT +ISV+V P+FEGQTKT+LGN E + +V+ V E L E+ E +P+V
Sbjct: 318 LSLTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVETIVNEQLAEFAESNPNV 377
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
L I+ K A + AA++A++L R+KSVL SS LPGKLADCS PE E++IVEGDS
Sbjct: 378 LKMIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSINDPEHCELYIVEGDS 437
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDR FQAILPL+GKILNVE+ M +NEEI+ +I ALG E+F E
Sbjct: 438 AGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILALGTSFGEEEFSTEK 497
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRY KIII+TDADVDGAHIRTLLLTFF+R+ ++L + G +++ PPLY V+ GK+ QY +
Sbjct: 498 LRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGRVFIAQPPLYLVKSGKEQQYAW 557
Query: 418 DDAELKKVKSSF----PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
DD E + S A IQR+KGLGEM P QLW TT++P R L + +E+A E
Sbjct: 558 DDDERNSITESMKKMQKGKANIHIQRYKGLGEMNPEQLWSTTMDPAHRSLLLVNVENAME 617
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLV 500
A+ VFS+LMG +V+ R+E I+ A V
Sbjct: 618 ADQVFSTLMGDKVEPRREFIEKNARYV 644
>gi|191636829|ref|YP_001985995.1| DNA gyrase B subunit [Lactobacillus casei BL23]
gi|239630809|ref|ZP_04673840.1| DNA gyrase [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|301065132|ref|YP_003787155.1| DNA gyrase subunit B [Lactobacillus casei str. Zhang]
gi|385818541|ref|YP_005854928.1| DNA topoisomerase subunit B [Lactobacillus casei LC2W]
gi|385821705|ref|YP_005858047.1| DNA topoisomerase subunit B [Lactobacillus casei BD-II]
gi|409995671|ref|YP_006750072.1| DNA gyrase subunit B [Lactobacillus casei W56]
gi|417982119|ref|ZP_12622783.1| DNA gyrase subunit B [Lactobacillus casei 12A]
gi|417982166|ref|ZP_12622828.1| DNA gyrase subunit B [Lactobacillus casei 21/1]
gi|417991181|ref|ZP_12631628.1| DNA gyrase subunit B [Lactobacillus casei A2-362]
gi|417992498|ref|ZP_12632854.1| DNA gyrase subunit B [Lactobacillus casei CRF28]
gi|417994685|ref|ZP_12635000.1| DNA gyrase subunit B [Lactobacillus casei M36]
gi|417997763|ref|ZP_12637999.1| DNA gyrase subunit B [Lactobacillus casei T71499]
gi|418000639|ref|ZP_12640819.1| DNA gyrase subunit B [Lactobacillus casei UCD174]
gi|418009525|ref|ZP_12649319.1| DNA gyrase subunit B [Lactobacillus casei Lc-10]
gi|418013785|ref|ZP_12653417.1| DNA gyrase subunit B [Lactobacillus casei Lpc-37]
gi|190711131|emb|CAQ65137.1| DNA gyrase, B subunit [Lactobacillus casei BL23]
gi|239527092|gb|EEQ66093.1| DNA gyrase [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|300437539|gb|ADK17305.1| DNA gyrase, B subunit [Lactobacillus casei str. Zhang]
gi|327380868|gb|AEA52344.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus casei
LC2W]
gi|327384032|gb|AEA55506.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus casei
BD-II]
gi|406356683|emb|CCK20953.1| DNA gyrase subunit B [Lactobacillus casei W56]
gi|410521522|gb|EKP96487.1| DNA gyrase subunit B [Lactobacillus casei 12A]
gi|410530601|gb|EKQ05370.1| DNA gyrase subunit B [Lactobacillus casei 21/1]
gi|410532345|gb|EKQ07054.1| DNA gyrase subunit B [Lactobacillus casei A2-362]
gi|410533220|gb|EKQ07903.1| DNA gyrase subunit B [Lactobacillus casei CRF28]
gi|410540724|gb|EKQ15235.1| DNA gyrase subunit B [Lactobacillus casei M36]
gi|410542411|gb|EKQ16859.1| DNA gyrase subunit B [Lactobacillus casei T71499]
gi|410549841|gb|EKQ23994.1| DNA gyrase subunit B [Lactobacillus casei UCD174]
gi|410555391|gb|EKQ29339.1| DNA gyrase subunit B [Lactobacillus casei Lc-10]
gi|410555480|gb|EKQ29423.1| DNA gyrase subunit B [Lactobacillus casei Lpc-37]
Length = 653
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 235/506 (46%), Positives = 326/506 (64%), Gaps = 9/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ + RGK T + V+ + GT++ F PD +FT FD + RIRELAF
Sbjct: 154 YYIDFIRGKVNTPM--KVIGTAPEHEHGTKVHFLPDPDIFTEIRTFDDKILTTRIRELAF 211
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP--LHDVVGFRKDVDGIT 120
LN L + D ++ + + GGL+ YV +L T+KK L + + GIT
Sbjct: 212 LNKGLKLTF--TDKRAATHEKLVFHYEGGLKSYVDFL-TEKKENLLQEPIYVEGQDKGIT 268
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++ALQ+ +D Y T+L +AN+I T +GGTH G K +LTR +N ++S +KD D L
Sbjct: 269 VEVALQYTND-YHSTLLTFANNIHTYEGGTHETGFKTALTRVINDYARRSGALKDSDDPL 327
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ VREGLT ++SV+ P+P+FEGQTKT+LGN + R VVD++ ++ ++L HP
Sbjct: 328 SGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDARTVVDRTFSDHFNKFLMEHPADGKL 387
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K++ A KA LAAKRAR++ R+KS L S+LPGKLAD +S PE SE+FIVEGDSAGG
Sbjct: 388 IIDKAMLASKARLAAKRAREVTRKKSGLEISNLPGKLADNTSKDPEISELFIVEGDSAGG 447
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK GR R QAILP+RGKILNVE+ + NEEI+ L A+G G G+DF RY
Sbjct: 448 SAKSGRSRLTQAILPIRGKILNVEKASMERILANEEIRTLFTAMGTGF-GQDFDINKARY 506
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK+II+TDADVDGAHIRTLLLT YRY + + D G +Y+ PPLY++ +GK QY D
Sbjct: 507 HKLIIMTDADVDGAHIRTLLLTLIYRYMRPVLDAGYVYIAQPPLYRLRQGKMTQYIDSDE 566
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+ + P + IQR+KGLGEM QLWETT++P+ R L ++ +DA A+ VF
Sbjct: 567 ELQDILGQLPPSPKPEIQRYKGLGEMDANQLWETTMDPDNRRLLRVSPKDAEAADGVFEM 626
Query: 481 LMGARVDTRKELIQNAANLVNLDHLD 506
LMG V+ R++ I++ A V+ +++D
Sbjct: 627 LMGDHVEPRRKFIEDNAVFVDPNNID 652
>gi|154249648|ref|YP_001410473.1| DNA gyrase subunit B [Fervidobacterium nodosum Rt17-B1]
gi|154153584|gb|ABS60816.1| DNA gyrase, B subunit [Fervidobacterium nodosum Rt17-B1]
Length = 650
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/508 (47%), Positives = 340/508 (66%), Gaps = 16/508 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y+RG T V + +++GT +RF PDK +FTT +FD +TI R+R+LAF
Sbjct: 156 YRQRYARG----VKTTEVEVIGETNKRGTIVRFKPDKLIFTTT-EFDSDTILTRLRDLAF 210
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LNP +TI E +D ++ + +AGGL+E++ LN K LH+VV +
Sbjct: 211 LNPSITIEFVDERNDIKRTLH----YAGGLKEFIAHLNKGSKTLHEVVVIDGSQQDCEVH 266
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+A Q+ +D +T++ + N+I+TIDGGTH+ G K + TR +N LGKK +K + G
Sbjct: 267 IAFQY-TDEDGETIVSFVNNIKTIDGGTHVTGFKTAFTRVVNELGKKKNLIKGE--PFKG 323
Query: 183 EHVREGLTCIISV-RVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
E +REG+T +++V + P+FEGQTK++LGN E++ V + V++ LT+Y E++ VL I
Sbjct: 324 EDLREGMTAVVNVLMMGTPQFEGQTKSKLGNEEIQDAVAKVVRDKLTDYFEVNETVLKII 383
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K+ A +A AAKRAR+ V++KS L +S+LPGKLADC + EE+E+FIVEGDSAGGS
Sbjct: 384 IQKAQQAREAREAAKRAREAVKRKSALGASTLPGKLADCITKNFEEAELFIVEGDSAGGS 443
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQ RDR FQAILPLRGKILNVE+ E + KNE+++++I A+ G GE+F LRY
Sbjct: 444 AKQARDRNFQAILPLRGKILNVEKSSELKLLKNEQVKDIIMAI-GGGIGENFDTSKLRYG 502
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE-RGKQVQYCYDDA 420
KI+I+TDADVDGAHIRTLLL FYRY + L +E IY+ +PPLYK+ G++ Y Y D
Sbjct: 503 KIVIMTDADVDGAHIRTLLLALFYRYMRQLIEEERIYIAMPPLYKLSISGEKPMYLYSDE 562
Query: 421 ELKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL + + + +N Y +QR+KGLGEM P QLWETT+NP+ R + ++ IEDA EA+ +F
Sbjct: 563 ELNEMINIAKQNNKRYEVQRYKGLGEMNPEQLWETTMNPKTRKIIKVKIEDAEEADSLFE 622
Query: 480 SLMGARVDTRKELIQNAANLVNLDHLDI 507
LMG + R+E I A ++L LD+
Sbjct: 623 ILMGKDPEERREYIMRHARQLSLVDLDV 650
>gi|445381405|ref|ZP_21427072.1| DNA gyrase subunit B [Streptococcus thermophilus MTCC 5460]
gi|445394338|ref|ZP_21428806.1| DNA gyrase subunit B [Streptococcus thermophilus MTCC 5461]
gi|444748933|gb|ELW73876.1| DNA gyrase subunit B [Streptococcus thermophilus MTCC 5461]
gi|444749041|gb|ELW73976.1| DNA gyrase subunit B [Streptococcus thermophilus MTCC 5460]
Length = 650
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/510 (44%), Positives = 344/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG V L + + GT + F PD ++F +FD +A R +ELAF
Sbjct: 150 HFQEYKRGVVVDDLRI----IGETEEHGTTVHFIPDPEIFQETTEFDFGKLAKRFQELAF 205
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN L I++ ++E + EK+ Y + GG+ YV+++N +K + D + ++DGI
Sbjct: 206 LNKGLRISIIDKREGLEQEKH----YHYEGGITSYVKYINENKDVIFDEPIYTYGEMDGI 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N +++K +K+KD +
Sbjct: 262 SVEVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKILKEKDDN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+G+ VREGLT IISV+ PNP+FEGQTKT+LGN EV K+ ++ E L+ +L +P +
Sbjct: 321 LTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEALSRFLLENPAIAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS PE +E+FIVEGDSAG
Sbjct: 381 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNPEMNELFIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G +F R
Sbjct: 441 GSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GSEFDVSKAR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYD 418
YHK++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y
Sbjct: 500 YHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQP 559
Query: 419 DAEL-KKVKSSFPSNALY----SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
A+ +K++++ + ++ ++QR+KGLGEM QLWETT++PE R+L ++ ++DAAE
Sbjct: 560 GADQEEKLRAALENYSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLLARVSVDDAAE 619
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG +V+ R+E I+ A LD
Sbjct: 620 ADKIFDMLMGDKVEPRREFIEENAVYSTLD 649
>gi|225619544|ref|YP_002720801.1| D Gyrase B subunit [Brachyspira hyodysenteriae WA1]
gi|10644698|gb|AAG21374.1|AF288224_1 DNA Gyrase B subunit [Brachyspira hyodysenteriae]
gi|225214363|gb|ACN83097.1| D Gyrase B subunit [Brachyspira hyodysenteriae WA1]
Length = 636
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/504 (46%), Positives = 328/504 (65%), Gaps = 13/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y RG P V V + + GT + F D ++F T + +D+ +A R+RELAF
Sbjct: 142 YRQVYHRGIPEEP----VKEVGTSKKTGTTVTFKADDEIFETTV-YDYKILANRLRELAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L+ D + NE+++ GG+E ++ LN +KK LHD + K+ D +
Sbjct: 197 LNRGIRITLK--DEREAEVVSNEFYYEGGIEMFITHLNENKKALHDKPIYLHKNEDKTDV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ DAY++ + Y N+I T +GGTH+ G + +LTR KK + K I+
Sbjct: 255 EVAMQYV-DAYNENIFTYCNNINTTEGGTHLVGFRTALTRVYTDFAKKLELDKKNKITFM 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGL ++SV++PNP+FEGQTKT+LGN EVR V ++ V E L +Y +P V+ +I
Sbjct: 314 GEDTREGLVAVVSVKIPNPQFEGQTKTKLGNTEVRAVTEKLVVEGLNDYFSQNPKVIKAI 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K +SA +A AA++ARDL R+K+ L S SLPGKLADCS ++ E+++VEGDSAGG+
Sbjct: 374 LEKIISAAQAREAARKARDLARRKNALESDSLPGKLADCSEQEVDKCEVYLVEGDSAGGT 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILPLRGK+LNVE+ + NE ++ +I ALG GV G F +RY
Sbjct: 434 AKGGRDRHFQAILPLRGKVLNVEKARLDKIIDNESLKPIIAALGCGV-GASFDISKIRYG 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ-VQYCYDDA 420
++II+ DAD+DG+HIRTLLLTFF+RY + L D G I++ VPPLYK+ K+ Y Y D
Sbjct: 493 RVIIMADADIDGSHIRTLLLTFFFRYMRPLIDLGHIFIAVPPLYKISFDKKNFLYAYSDE 552
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+ K+ + + Y IQR+KGLGEM QLWETT+NPE R++ Q++ EDA +A+ +FS
Sbjct: 553 QRDKILAE-NKDRKYDIQRYKGLGEMNADQLWETTMNPETRLMYQVLTEDAEKADQLFSM 611
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG V R++ I++ A V NLD
Sbjct: 612 LMGDEVKPRRDFIESNARYVKNLD 635
>gi|118587497|ref|ZP_01544922.1| DNA gyrase, B subunit [Oenococcus oeni ATCC BAA-1163]
gi|71466856|emb|CAH41002.1| DNA gyrase subunit B [Oenococcus oeni]
gi|118432147|gb|EAV38888.1| DNA gyrase, B subunit [Oenococcus oeni ATCC BAA-1163]
Length = 652
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/501 (46%), Positives = 327/501 (65%), Gaps = 9/501 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ + RG T + P+ + ++GT + F PD +F I FD+ T+A RIRELAF
Sbjct: 153 YYMDFERGHIKTEMKLLDEPM--RLKRGTIVHFAPDPDIFRETIVFDYRTLASRIRELAF 210
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
LN L +++ + DP KN+ + + GG+ EYV++LN +K+PL + V + +GI +
Sbjct: 211 LNKGLRLSITDKRVDPVKNE--SFMYEGGIAEYVKFLNKNKQPLFPEPVYVEGEENGIQV 268
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +DA ++T++ + N+I T +GGTH G K +LTR +N KK +KD D LS
Sbjct: 269 EVALQY-TDAVAETLMSFTNNIHTHEGGTHETGFKMALTRIINDYVKKKGILKDSDDPLS 327
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREG+T I+S++ P+P+FEGQTKT+LGN + ++ V+ ++ +P+ +I
Sbjct: 328 GEDVREGITAIVSIKHPDPQFEGQTKTKLGNTDAQQAVNHQFSTIFNRFMMENPETARAI 387
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+K L A KA +AAK+ARDL R+KS L S+L GKLAD +S PE SE+FIVEGDSAGGS
Sbjct: 388 ANKGLIASKARVAAKKARDLTRKKSGLEISALAGKLADNTSRDPEISELFIVEGDSAGGS 447
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR R QAILP+RGKILNVE+ + NEEI++L A+G G GE+F YH
Sbjct: 448 AKQGRSRLTQAILPIRGKILNVEKATLDKVLANEEIRSLFTAMGTGF-GEEFDISKAHYH 506
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY--DD 419
K+II+TDADVDGAHIRTLLLT F+RY + L D G IY+ PPLY V G Q Y D
Sbjct: 507 KVIIMTDADVDGAHIRTLLLTLFFRYMRPLIDAGYIYIAQPPLYGVAIGNSDQRVYLDSD 566
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL + ++ P++ IQR+KGLGEM VQLW+TT++P+ R L ++ E E + F
Sbjct: 567 EELDQYTATLPASPKPRIQRYKGLGEMDAVQLWDTTMDPKHRRLLRVDPEYQPEVDTTFD 626
Query: 480 SLMGARVDTRKELIQNAANLV 500
LMG RV+ R+E I++ A V
Sbjct: 627 MLMGDRVEPRREFIEDNAQFV 647
>gi|320527132|ref|ZP_08028319.1| DNA gyrase, B subunit [Solobacterium moorei F0204]
gi|320132460|gb|EFW25003.1| DNA gyrase, B subunit [Solobacterium moorei F0204]
Length = 664
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/509 (45%), Positives = 330/509 (64%), Gaps = 17/509 (3%)
Query: 2 EYHQKYSRG-KPVTTL----TCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGR 56
EY+ ++ G PV TL TC D+ G+ +RF D +FT + ++H+ + R
Sbjct: 165 EYYIRFENGGHPVGTLIEKGTC------PADKHGSTVRFKADPTIFTETVAYEHDILRDR 218
Query: 57 IRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKD 115
+R+LAFLN + + + E ++ + F GGL++Y ++LN ++ + H+++
Sbjct: 219 LRQLAFLNKSICLKFNDLREEDEAKRHYVFKFDGGLKQYTEFLNRNRDVVNHEIIYSEGY 278
Query: 116 VDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKD 175
I +++A Q+ +D Y+ + + N+I T +GGTH EG + +L R +N + + +K+
Sbjct: 279 ESNIQVEVACQY-NDGYNPNIYTFCNNINTAEGGTHEEGFRLALNRVINKYARDTGFLKE 337
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
KD +L+ + REGLT +ISV+ P+P++EGQTKT+LGN EVRK+V L YL +P
Sbjct: 338 KDDNLTTDDCREGLTAVISVKHPDPQYEGQTKTKLGNSEVRKIVSDIFGTQLERYLMENP 397
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
D IL K A +A +AAK+AR+L R+KS L S LPGKLADCSS EI+IVEG
Sbjct: 398 DEAKVILEKVALASQARMAAKKARELTRRKSALEVSPLPGKLADCSSKDASICEIYIVEG 457
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK 355
SAGGSAKQGRD FQAILPLRGKILNVE+ ++ +Y+N EI+++I A G GV E
Sbjct: 458 QSAGGSAKQGRDSHFQAILPLRGKILNVEKARQSRIYENAEIRSMITAFGCGVSDE-IDL 516
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
E LRYHKI+I+TDADVDGAHIRTLLLTFFYRY + L ++G IY+ PPLYKV++G+ V+Y
Sbjct: 517 EKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYLRPLLEQGYIYIAQPPLYKVQKGQTVRY 576
Query: 416 CYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
Y D +L++VK SIQR+KGLGEM P QLWETT++P+ R L ++ + DA A+
Sbjct: 577 AYTDNQLEEVKRELGDR--LSIQRYKGLGEMNPEQLWETTMDPKNRTLIRVAVGDAEAAD 634
Query: 476 VVFSSLMGARVDTRKELI-QNAANLVNLD 503
F+ LMG V+ RK I +NA NLD
Sbjct: 635 YNFTMLMGEEVEPRKNFIVENAHFAENLD 663
>gi|340350611|ref|ZP_08673590.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella
nigrescens ATCC 33563]
gi|445114741|ref|ZP_21378019.1| DNA gyrase, B subunit [Prevotella nigrescens F0103]
gi|339607607|gb|EGQ12539.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella
nigrescens ATCC 33563]
gi|444840613|gb|ELX67641.1| DNA gyrase, B subunit [Prevotella nigrescens F0103]
Length = 656
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 236/516 (45%), Positives = 335/516 (64%), Gaps = 21/516 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + V D+ GTR +FWPD +FTT I F + +A R+RELAF
Sbjct: 146 YQQEYEQGKPLYPVKV----VGETDKTGTRQQFWPDGSIFTTTI-FQWDIVARRMRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
LN + I L + E E F A GL+E+V++++ + L D V+ + + GI
Sbjct: 201 LNAGIKITLTDLRPNTEGKTRQEVFHAKDGLKEFVRYVDRHRTHLFDDVIYLKTEKQGIP 260
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKDK 176
I++A+ + +D Y++ + Y N+I TI+GGTH+ G + +LTRTL + +K ++
Sbjct: 261 IEVAIMYNTD-YNENIHSYVNNINTIEGGTHLTGFRTALTRTLKAYADNDPQIAKQIEKA 319
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
I ++GE REGLT +IS++V P+FEGQTKT+LGN EV V Q+V E L+ YLE +P
Sbjct: 320 KIEITGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVSGAVQQAVGEALSYYLEENPA 379
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
I K + A A +AA++AR+ V++K+V+ LPGKLADCS+ P++ EIF+VEGD
Sbjct: 380 EAKLICDKVILAATARIAARKARESVQRKNVMTGGGLPGKLADCSNKDPKDCEIFLVEGD 439
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGE-DF 353
SAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV+GE DF
Sbjct: 440 SAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEAESVMNIIQSIGVRFGVEGESDF 499
Query: 354 KK--EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK 411
+ E LRY KIII+TDADVDG+HI TL++T FYRY + +EG +Y+ PPLYK K
Sbjct: 500 EANTEKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMPRVIEEGHLYIATPPLYKCTYKK 559
Query: 412 QVQYCYDDAE----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLV 467
+YCY + + L K N QR+KGLGEM P QLWETT++P+ R+LKQ+
Sbjct: 560 VSEYCYTEQQRLQFLDKYAGGDEENKAVHTQRYKGLGEMNPEQLWETTMDPKTRLLKQVT 619
Query: 468 IEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
IE+A+ A+ +FS LMG V+ R+E I+ A N+D
Sbjct: 620 IENASTADEMFSMLMGDDVEPRREFIEQNATYANID 655
>gi|387760818|ref|YP_006067795.1| DNA gyrase subunit B [Streptococcus salivarius 57.I]
gi|339291585|gb|AEJ52932.1| DNA gyrase, B subunit [Streptococcus salivarius 57.I]
Length = 650
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/510 (44%), Positives = 344/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG V L + ++ GT + F PD ++F +FD +A RI+ELAF
Sbjct: 150 HFQEYKRGVVVADLAV----IGETEKHGTTVHFTPDPEIFQETTEFDFGKLAKRIQELAF 205
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGI 119
LN L I++ ++E + EK+ Y + GG+ YV+++N +K + D + ++DGI
Sbjct: 206 LNKGLRISITDKREGLEQEKH----YHYEGGITSYVKYINENKDVIFDEPIYTDGEMDGI 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N +++K +K+KD +
Sbjct: 262 SVEVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKILKEKDDN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+G+ VREGLT IISV+ PNP+FEGQTKT+LGN EV K+ ++ E L+ +L +P +
Sbjct: 321 LTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEALSRFLLENPAIAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS E +E+FIVEGDSAG
Sbjct: 381 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G +F R
Sbjct: 441 GSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GAEFDVSKAR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYD 418
YHK++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y
Sbjct: 500 YHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLESGYVYIAQPPIYGVKVGSEIKEYIQP 559
Query: 419 DAELK-KVKSSFPSNALY----SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
A+ + K++++ ++ ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAE
Sbjct: 560 GADQEDKLRAALEKYSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAE 619
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG +V+ R+E I+ A LD
Sbjct: 620 ADKIFDMLMGDKVEPRREFIEENAVYSTLD 649
>gi|342214941|ref|ZP_08707611.1| DNA gyrase, B subunit [Veillonella sp. oral taxon 780 str. F0422]
gi|341590243|gb|EGS33489.1| DNA gyrase, B subunit [Veillonella sp. oral taxon 780 str. F0422]
Length = 633
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/490 (47%), Positives = 334/490 (68%), Gaps = 11/490 (2%)
Query: 17 TCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDS 76
T + + + DR GT +RF PD Q+F T I F+ + + R++ELAFLN L I L S
Sbjct: 151 TSDLKQIGTTDRTGTTVRFKPDAQIFETTI-FEFDVLKTRLQELAFLNKGLRITL----S 205
Query: 77 DPEKNQYNEYF-FAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSD 134
D +E F + GGL +++++LN K+ + V+ D + +D+ALQ+ +D+YS+
Sbjct: 206 DKRGEGRSESFHYEGGLVQFIEYLNEAKEAITPSVISIDNTRDDVVVDVALQY-NDSYSE 264
Query: 135 TMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIIS 194
T+L + N+I TIDGGTH+ G + +LTRTLN G+K+ +K+ + +L+GE VREGLT ++S
Sbjct: 265 TILSFVNNINTIDGGTHLSGFRTALTRTLNDYGRKAGILKENESNLTGEDVREGLTAVVS 324
Query: 195 VRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALA 254
V+V P+FEGQTK +LGN EV+ + D V + L +LE HP I+ K+ +A +A A
Sbjct: 325 VKVLEPQFEGQTKGKLGNSEVKGITDTIVSDGLRVFLEEHPAEAKKIIEKATNASRAREA 384
Query: 255 AKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAIL 314
A++AR+L R+K+ L SLPGKLADCS +EI++VEGDSAGG+AKQGRDRR+QAIL
Sbjct: 385 ARKARELTRRKNALEVGSLPGKLADCSEKDTTMTEIYLVEGDSAGGTAKQGRDRRYQAIL 444
Query: 315 PLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGA 374
PLRGKILNVE+ + N EI+++I A G G+ G+DF RY+KIII+TDADVDGA
Sbjct: 445 PLRGKILNVEKARLDKILANAEIRSMITAFGTGI-GQDFDITKSRYNKIIIMTDADVDGA 503
Query: 375 HIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNAL 434
HIRTLLLTFFYRY + L +EG +++ PPLY++++G++ Y Y D EL +
Sbjct: 504 HIRTLLLTFFYRYMRPLIEEGHVFIAQPPLYQIKKGQKQWYAYSDQELSDRLDEIGREGI 563
Query: 435 YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 494
+IQR+KGLGEM QLW+TT+NPE R + Q+ +ED+ A+ +FS LMG +V+ R++ I+
Sbjct: 564 -TIQRYKGLGEMNAEQLWDTTMNPEHRTILQVSMEDSIAADKIFSVLMGDKVEPRRKFIE 622
Query: 495 NAANLV-NLD 503
+ A V NLD
Sbjct: 623 DNAEYVRNLD 632
>gi|319900374|ref|YP_004160102.1| DNA gyrase subunit B [Bacteroides helcogenes P 36-108]
gi|319415405|gb|ADV42516.1| DNA gyrase subunit B [Bacteroides helcogenes P 36-108]
Length = 657
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 235/514 (45%), Positives = 334/514 (64%), Gaps = 18/514 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y GKP+ + + + GT+ FWPD +FT + ++ H T+ R+RELA+
Sbjct: 148 YQQEYECGKPLYAVK--EMGLCEPGLSGTKQTFWPDDSIFTVS-EYKHTTLQARLRELAY 204
Query: 63 LNPKLTIALRK-EDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN + I L D E EYF + G++E+V++LN++ PL D V+ + G+
Sbjct: 205 LNKGIRITLTDLRVKDEEGKPLTEYFHSEEGVKEFVRYLNSNNTPLFDDVIYLNTEKSGV 264
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK--SKTVKDKD 177
I+ A+ + + Y + + Y N+I T +GGTH G +A+LTR L SK ++
Sbjct: 265 PIECAIMY-NTGYRENLHSYVNNINTREGGTHEGGFRAALTRVLKKYADDNCSKALEKAK 323
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
+ +SGE REGL +ISV+V P+FEGQTKT+LGN EV V+Q+V E L+ YLE HP
Sbjct: 324 VEISGEDFREGLIAVISVKVSEPQFEGQTKTKLGNNEVSGAVNQAVGEALSNYLEEHPKE 383
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K L A A +AA++AR+ V++KS + +PGKLADCSS PEE E+F+VEGDS
Sbjct: 384 AKVIVDKVLLAATARVAARKARESVQRKSPMSGGGMPGKLADCSSKDPEECELFLVEGDS 443
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFKK 355
AGGSAKQGR+R FQAILPLRGKILNVE+ ++++E+ N+I+ALG+ GV ED K+
Sbjct: 444 AGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQALGIRFGVDSEDSKE 503
Query: 356 ---EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ 412
+ LRY K+II+TDADVDG+HI TL++T F+RY + G +Y+ PPLY +GK
Sbjct: 504 ANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQVIQNGYLYIATPPLYLCSKGKV 563
Query: 413 VQYCYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIE 469
+YC+ D + +K ++ NA+++ QR+KGLGEM P QLWETT+NPE RMLKQ+ +E
Sbjct: 564 KEYCWTDQQRQKFIDAYGGGSENAIHT-QRYKGLGEMNPDQLWETTMNPENRMLKQVHLE 622
Query: 470 DAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
+AAEA+ VFS LMG V R++ I++ A N+D
Sbjct: 623 NAAEADYVFSMLMGEDVGPRRDFIESNATYANID 656
>gi|448323114|ref|ZP_21512578.1| DNA gyrase subunit B [Natronococcus amylolyticus DSM 10524]
gi|445600300|gb|ELY54313.1| DNA gyrase subunit B [Natronococcus amylolyticus DSM 10524]
Length = 643
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/498 (46%), Positives = 331/498 (66%), Gaps = 7/498 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ + G+PV + +D + GT + FWPD VF T F +T++ R+RELAF
Sbjct: 142 FRHAFEAGEPVGDME-RARDMDDDEETGTEVTFWPDTDVFETR-DFSFSTLSNRLRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNE--YFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVD-GI 119
LN + I LR E + E + E Y + GG+ E+V++LN + +HD V + +D D I
Sbjct: 200 LNSGVRITLRDERQETEDGEVIEETYEYEGGIREFVEYLNETRSVMHDDVIYFEDEDQNI 259
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+Q D ++ +AN+I T +GGTH+ G K +LTR +N G ++ + D D +
Sbjct: 260 QVEVAMQATEDLQG-SIHAFANNINTREGGTHLTGFKTALTRVVNDYGNENNLLGDIDGN 318
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE +REGLT +ISV+ P+P+FEGQTKT+LGN EVR +V+ ++ E L Y E HPD
Sbjct: 319 LTGEDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVEGAMHEQLGTYFEEHPDTAQ 378
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K++ A KA AA++A +L R+KS L S+SLPGKLADC + PEE+E+FI EGDSAG
Sbjct: 379 AIVLKAVEAAKARKAAQKAEELTRRKSALESTSLPGKLADCQTKDPEEAELFIAEGDSAG 438
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQ R+ FQA+LP++GKILNVE+ + +N+EI+N+I A+G G+ G++F + +R
Sbjct: 439 GSAKQARNPEFQAVLPIKGKILNVEKHRLDRILENDEIRNMITAIGAGI-GDEFDIDDVR 497
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
Y KII+ TDADVDGAHIRTL+LTFFYR+ + L + G +Y PPLY++ + D
Sbjct: 498 YKKIIMATDADVDGAHIRTLMLTFFYRHMRPLLEGGYVYATQPPLYRIRYRGETYDAMTD 557
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
AE ++ +QRFKGLGEM P QLWETT+NPE R+LKQ+ +EDAA A+ +FS
Sbjct: 558 AERDEIVEEVCDGNPTQVQRFKGLGEMNPEQLWETTMNPENRILKQITVEDAAAADKMFS 617
Query: 480 SLMGARVDTRKELIQNAA 497
LMG V+ RK+ I++ A
Sbjct: 618 VLMGDAVEPRKQFIKDHA 635
>gi|199598229|ref|ZP_03211650.1| DNA gyrase, B subunit [Lactobacillus rhamnosus HN001]
gi|199590832|gb|EDY98917.1| DNA gyrase, B subunit [Lactobacillus rhamnosus HN001]
Length = 653
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/506 (45%), Positives = 326/506 (64%), Gaps = 7/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ + RGK V T + P + GT++ F PD +FT FD + RIRELAF
Sbjct: 154 YYIDFVRGK-VNTPMKELGPAPEHE-HGTKVHFQPDPDIFTETTTFDDKVLTTRIRELAF 211
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L + D ++ + + GGL+ YV +L K+ L + + GIT+
Sbjct: 212 LNKGLKLTF--TDKRAATHEKLVFHYEGGLKSYVDFLTKKKENLLQEPIYVEGQDKGITV 269
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D Y T+L +AN+I T +GGTH G K +LTR +N ++S +KD D LS
Sbjct: 270 EVALQYTND-YHSTLLTFANNIHTYEGGTHETGFKTALTRVINDYARRSGALKDSDDPLS 328
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT ++SV+ P+P+FEGQTKT+LGN + R VVD++ ++ ++L HP I
Sbjct: 329 GDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDARTVVDRTFSDHFNKFLMEHPADGKLI 388
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ A KA LAAKRAR++ R+KS L S+LPGKLAD +S PE SE+FIVEGDSAGGS
Sbjct: 389 IDKAMLASKARLAAKRAREVTRKKSGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGS 448
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR R QAILP+RGKILNVE+ + NEEI+ L A+G G G+DF RYH
Sbjct: 449 AKSGRSRLTQAILPIRGKILNVEKASMERILANEEIRTLFTAMGTGF-GQDFDISKARYH 507
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLT YRY + + D G +Y+ PPLY++ +GK ++Y D E
Sbjct: 508 KLIIMTDADVDGAHIRTLLLTLIYRYMRPVLDAGYVYIAQPPLYRLRQGKMMRYIDSDEE 567
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ + P + IQR+KGLGEM QLWETT++P+ R L ++ +DA +A+ +F L
Sbjct: 568 LQDILGQLPPSPKPDIQRYKGLGEMDASQLWETTMDPDTRRLLRVSPKDAEQADGIFEML 627
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG V+ R++ I+ A V+ +++D+
Sbjct: 628 MGDHVEPRRKFIEENAVFVDPNNIDV 653
>gi|386345198|ref|YP_006041362.1| hypothetical protein STH8232_1741 [Streptococcus thermophilus JIM
8232]
gi|339278659|emb|CCC20407.1| hypothetical protein STH8232_1741 [Streptococcus thermophilus JIM
8232]
Length = 650
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/510 (44%), Positives = 344/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG V L + + GT + F PD ++F +FD +A R +ELAF
Sbjct: 150 HFQEYKRGVVVDDLRI----IGETEEHGTTVHFIPDPEIFQETTEFDFGKLAKRFQELAF 205
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN L I++ ++E + EK+ Y + GG+ YV+++N +K + D + ++DGI
Sbjct: 206 LNKGLRISITDKREGLEQEKH----YHYEGGITSYVKYINENKDVIFDEPIYTYGEMDGI 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N +++K +K+KD +
Sbjct: 262 SVEVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKILKEKDDN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+G+ VREGLT IISV+ PNP+FEGQTKT+LGN EV K+ ++ E L+ +L +P +
Sbjct: 321 LTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEALSRFLLENPAIAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS PE +E+FIVEGDSAG
Sbjct: 381 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNPEMNELFIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G +F R
Sbjct: 441 GSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GSEFDVSKAR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYD 418
YHK++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y
Sbjct: 500 YHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQP 559
Query: 419 DAEL-KKVKSSFPSNALY----SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
A+ +K++++ + ++ ++QR+KGLGEM QLWETT++PE R+L ++ ++DAAE
Sbjct: 560 GADQEEKLRAALENYSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLLARVSVDDAAE 619
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG +V+ R+E I+ A LD
Sbjct: 620 ADKIFDMLMGDKVEPRREFIEENAVYSTLD 649
>gi|229551099|ref|ZP_04439824.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
LMS2-1]
gi|258507000|ref|YP_003169751.1| DNA gyrase subunit B [Lactobacillus rhamnosus GG]
gi|258538197|ref|YP_003172696.1| DNA gyrase subunit B [Lactobacillus rhamnosus Lc 705]
gi|385826725|ref|YP_005864497.1| DNA gyrase B subunit [Lactobacillus rhamnosus GG]
gi|385833944|ref|YP_005871718.1| DNA gyrase subunit B [Lactobacillus rhamnosus ATCC 8530]
gi|418071427|ref|ZP_12708701.1| DNA gyrase subunit B [Lactobacillus rhamnosus R0011]
gi|421770095|ref|ZP_16206797.1| DNA gyrase subunit B [Lactobacillus rhamnosus LRHMDP2]
gi|421771498|ref|ZP_16208157.1| DNA gyrase subunit B [Lactobacillus rhamnosus LRHMDP3]
gi|423077497|ref|ZP_17066196.1| DNA gyrase, B subunit [Lactobacillus rhamnosus ATCC 21052]
gi|229315560|gb|EEN81533.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
LMS2-1]
gi|257146927|emb|CAR85900.1| DNA gyrase subunit B [Lactobacillus rhamnosus GG]
gi|257149873|emb|CAR88845.1| DNA gyrase subunit B [Lactobacillus rhamnosus Lc 705]
gi|259648370|dbj|BAI40532.1| DNA gyrase B subunit [Lactobacillus rhamnosus GG]
gi|355393435|gb|AER62865.1| DNA gyrase, B subunit [Lactobacillus rhamnosus ATCC 8530]
gi|357538921|gb|EHJ22941.1| DNA gyrase subunit B [Lactobacillus rhamnosus R0011]
gi|357554115|gb|EHJ35845.1| DNA gyrase, B subunit [Lactobacillus rhamnosus ATCC 21052]
gi|411182903|gb|EKS50046.1| DNA gyrase subunit B [Lactobacillus rhamnosus LRHMDP2]
gi|411185087|gb|EKS52216.1| DNA gyrase subunit B [Lactobacillus rhamnosus LRHMDP3]
Length = 653
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/506 (45%), Positives = 326/506 (64%), Gaps = 7/506 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+ + RGK V T + P + GT++ F PD +FT FD + RIRELAF
Sbjct: 154 YYIDFVRGK-VNTPMKELGPAPEHE-HGTKVHFQPDPDIFTETTTFDDKVLTTRIRELAF 211
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L + D ++ + + GGL+ YV +L K+ L + + GIT+
Sbjct: 212 LNKGLKLTF--TDKRAATHEKLVFHYEGGLKSYVDFLTKKKENLLQEPIYVEGQDKGITV 269
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D Y T+L +AN+I T +GGTH G K +LTR +N ++S +KD D LS
Sbjct: 270 EVALQYTND-YHSTLLTFANNIHTYEGGTHETGFKTALTRVINDYARRSGALKDSDDPLS 328
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT ++SV+ P+P+FEGQTKT+LGN + R VVD++ ++ ++L HP I
Sbjct: 329 GDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDARTVVDRTFSDHFNKFLMEHPADGKLI 388
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ A KA LAAKRAR++ R+KS L S+LPGKLAD +S PE SE+FIVEGDSAGGS
Sbjct: 389 IDKAMLASKARLAAKRAREVTRKKSGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGS 448
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR R QAILP+RGKILNVE+ + NEEI+ L A+G G G+DF RYH
Sbjct: 449 AKSGRSRLTQAILPIRGKILNVEKASMERILANEEIRTLFTAMGTGF-GQDFDISKARYH 507
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLT YRY + + D G +Y+ PPLY++ +GK ++Y D E
Sbjct: 508 KLIIMTDADVDGAHIRTLLLTLIYRYMRPVLDAGYVYIAQPPLYRLRQGKMMRYIDSDEE 567
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ + P + IQR+KGLGEM QLWETT++P+ R L ++ +DA +A+ +F L
Sbjct: 568 LQDILGQLPPSPKPDIQRYKGLGEMDASQLWETTMDPDTRRLLRVSPKDAEQADGIFEML 627
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG V+ R++ I+ A V+ +++D+
Sbjct: 628 MGDHVEPRRKFIEENAVFVDPNNIDV 653
>gi|294674979|ref|YP_003575595.1| DNA gyrase subunit B [Prevotella ruminicola 23]
gi|294471706|gb|ADE81095.1| DNA gyrase, B subunit [Prevotella ruminicola 23]
Length = 658
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 238/518 (45%), Positives = 337/518 (65%), Gaps = 24/518 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + V D+ GTR +FWPD +FTT ++ ++ IA R+RELA+
Sbjct: 147 YQQEYEKGKPLYDVKI----VGDTDKTGTRQQFWPDGSIFTTT-EYKYDIIAKRMRELAY 201
Query: 63 LNPKLTIALRKEDSDPEKN-QYNEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN +TI L D E N + E F A GL+E+V++++ + + D + + + DG+
Sbjct: 202 LNAGITITLTDLRPDEEGNLRQPEVFHAKEGLKEFVRYVDRHRTSIIGDPICLKTEKDGV 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKS----KTVKD 175
I++AL + SD YS+ + Y N+I TI+GGTH+ G + +L RTL + K ++
Sbjct: 262 PIEVALLYNSD-YSENIHSYVNNINTIEGGTHLTGFRIALARTLKKYADEDDQLRKQIEK 320
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
I ++ + REGLT IISV+V P+FEGQTKT+LGN EV V ++V E +T YLE +P
Sbjct: 321 AKIEVAQDDFREGLTAIISVKVAEPQFEGQTKTKLGNSEVNGAVQKAVGEAMTNYLEENP 380
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
+I K + A A +AA++AR+ V++K+ + LPGKLADCS+ P+E EIF+VEG
Sbjct: 381 KEAHTICEKVILAATARIAARKARESVQRKNPMTGGGLPGKLADCSNKDPKECEIFLVEG 440
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDF 353
DSAGGSAKQGRDR FQAILPLRGKILNVE+ +++ E + N+I+++G+ GV GED
Sbjct: 441 DSAGGSAKQGRDRHFQAILPLRGKILNVEKVQWHRVFEAESVMNIIQSIGVRFGVDGEDS 500
Query: 354 KK---EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG 410
K + LRY KIII+TDADVDG+HI TL++T FYR+ + G +Y+ PPLYK
Sbjct: 501 KDANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPQVIQGGHLYIATPPLYKCTYK 560
Query: 411 KQVQYCYDDAEL-----KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQ 465
K +YCY + + K V + L++ QR+KGLGEM P QLWETT+NPE R+LKQ
Sbjct: 561 KTSEYCYTEQQRQAFIDKYVAGNGDDKGLHT-QRYKGLGEMNPEQLWETTMNPENRLLKQ 619
Query: 466 LVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
+ IE+AAEA+ +FS LMG V+ R+E I+ A N+D
Sbjct: 620 VTIENAAEADEIFSMLMGDDVEPRREFIEKNATYANID 657
>gi|312863428|ref|ZP_07723666.1| DNA gyrase, B subunit [Streptococcus vestibularis F0396]
gi|322516316|ref|ZP_08069243.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
vestibularis ATCC 49124]
gi|311100964|gb|EFQ59169.1| DNA gyrase, B subunit [Streptococcus vestibularis F0396]
gi|322125185|gb|EFX96572.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
vestibularis ATCC 49124]
Length = 650
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/510 (44%), Positives = 344/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG V L + ++ GT + F PD ++F +FD +A RI+ELAF
Sbjct: 150 HFQEYKRGVVVADLAV----IGETEKHGTTVHFTPDPEIFQETTEFDFGKLAKRIQELAF 205
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGI 119
LN L I++ ++E + EK+ Y + GG+ YV+++N +K + D + ++DGI
Sbjct: 206 LNKGLRISITDKREGLEQEKH----YHYEGGITSYVKYINENKDVIFDEPIYTDGEMDGI 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N +++K +K+KD +
Sbjct: 262 SVEVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKILKEKDDN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+G+ VREGLT IISV+ PNP+FEGQTKT+LGN EV K+ ++ E L+ +L +P +
Sbjct: 321 LTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEALSRFLLENPAIAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS E +E+FIVEGDSAG
Sbjct: 381 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G +F R
Sbjct: 441 GSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GSEFDVSKAR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYD 418
YHK++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y
Sbjct: 500 YHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQP 559
Query: 419 DA-ELKKVKSSFPSNALY----SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
A + +K++ + + ++ ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAE
Sbjct: 560 GANQEEKLRVALENYSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAE 619
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG +V+ R+E I+ A LD
Sbjct: 620 ADKIFDMLMGDKVEPRREFIEENAVYSTLD 649
>gi|296127762|ref|YP_003635014.1| DNA gyrase subunit B [Brachyspira murdochii DSM 12563]
gi|296019578|gb|ADG72815.1| DNA gyrase, B subunit [Brachyspira murdochii DSM 12563]
Length = 637
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/504 (46%), Positives = 324/504 (64%), Gaps = 13/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y RG P V V + + GT + F D +F T + +D+ +A R+RELAF
Sbjct: 143 YRQVYHRGVPEEP----VKEVGTSTKNGTTVIFKADADIFETTV-YDYKILANRLRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L D + NE+++ GG+E ++ LN +KK LHD + K D +
Sbjct: 198 LNRGIRITL--TDKREAETVSNEFYYEGGIEMFITHLNENKKALHDKPIYLHKTEDKTDV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ DAY++ + Y N+I T +GGTH+ G + +LTR KK + K I+
Sbjct: 256 EVAMQYV-DAYNENIFTYCNNINTTEGGTHLVGFRTALTRVYTDFAKKLELDKKNKITFM 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGL ++SV++PNP+FEGQTKT+LGN EVR V ++ V E L +Y +P V+ +I
Sbjct: 315 GEDTREGLVAVVSVKIPNPQFEGQTKTKLGNTEVRAVTEKLVVEGLNDYFSQNPKVIKAI 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K +SA A AA++ARDL R+K+ L S SLPGKLADCS ++ E+++VEGDSAGG+
Sbjct: 375 LEKIISAANAREAARKARDLARRKNALESDSLPGKLADCSEQEVDKCEVYLVEGDSAGGT 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILPLRGK+LNVE+ + NE ++ +I ALG GV G F +RY
Sbjct: 435 AKGGRDRHFQAILPLRGKVLNVEKARLDKIIDNESLKPIIAALGCGV-GASFDISKIRYG 493
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ-VQYCYDDA 420
++II+ DAD+DG+HIRTLLLTFF+RY + L D G I++ VPPLYK+ K+ Y Y D
Sbjct: 494 RVIIMADADIDGSHIRTLLLTFFFRYMRPLIDLGHIFIAVPPLYKISFDKKNFTYAYSDE 553
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+ K+ S + Y IQR+KGLGEM QLWETT+NPE R++ Q++ EDA +A+ +FS
Sbjct: 554 QRDKILSE-NKDRKYDIQRYKGLGEMNADQLWETTMNPETRLMYQVLTEDAEKADQLFSM 612
Query: 481 LMGARVDTRKELIQ-NAANLVNLD 503
LMG V R++ I+ NA + NLD
Sbjct: 613 LMGDEVKPRRDFIEANARYVKNLD 636
>gi|212692798|ref|ZP_03300926.1| hypothetical protein BACDOR_02296 [Bacteroides dorei DSM 17855]
gi|237709487|ref|ZP_04539968.1| DNA gyrase B subunit [Bacteroides sp. 9_1_42FAA]
gi|265754693|ref|ZP_06089745.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_33FAA]
gi|345514532|ref|ZP_08794043.1| DNA gyrase, B subunit [Bacteroides dorei 5_1_36/D4]
gi|423230241|ref|ZP_17216645.1| DNA gyrase, B subunit [Bacteroides dorei CL02T00C15]
gi|423241032|ref|ZP_17222146.1| DNA gyrase, B subunit [Bacteroides dorei CL03T12C01]
gi|423243952|ref|ZP_17225027.1| DNA gyrase, B subunit [Bacteroides dorei CL02T12C06]
gi|212664587|gb|EEB25159.1| DNA gyrase, B subunit [Bacteroides dorei DSM 17855]
gi|229436655|gb|EEO46732.1| DNA gyrase, B subunit [Bacteroides dorei 5_1_36/D4]
gi|229456543|gb|EEO62264.1| DNA gyrase B subunit [Bacteroides sp. 9_1_42FAA]
gi|263234807|gb|EEZ20375.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_33FAA]
gi|392631750|gb|EIY25719.1| DNA gyrase, B subunit [Bacteroides dorei CL02T00C15]
gi|392643094|gb|EIY36852.1| DNA gyrase, B subunit [Bacteroides dorei CL03T12C01]
gi|392643470|gb|EIY37220.1| DNA gyrase, B subunit [Bacteroides dorei CL02T12C06]
Length = 654
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/514 (45%), Positives = 330/514 (64%), Gaps = 21/514 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT-TAIQFDHNTIAGRIRELA 61
Y Q+YS G P+ + V V + D GT+ FWPD +FT T +FD + R+RELA
Sbjct: 148 YQQEYSCGHPLYS----VKEVGTADITGTKQTFWPDDTIFTVTEYKFD--ILQARMRELA 201
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAG--GLEEYVQWLNTDKKPL-HDVVGFRKDVDG 118
+LN +TI+L E + + F G++E+V++LN + + L DV+ + +
Sbjct: 202 YLNKGITISLTDRRIKEEDGSFKKEIFHSDEGVKEFVRFLNRNNEALIDDVIYLNTEKNN 261
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I+ A+ + + Y +++ Y N+I TI+GGTH G +++LTR L + +K ++ +
Sbjct: 262 TPIECAIMY-NTGYRESLHSYVNNINTIEGGTHEAGFRSALTRVLKKYAEDTKALEKAKV 320
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+SGE REGL +ISV+V P+FEGQTKT+LGN EV V+Q+V E LT YLE HP
Sbjct: 321 EISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNSEVSGAVNQAVGEALTYYLEEHPKEA 380
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K + A A +AA++AR+ V++KS + LPGKLADCSS PEE E+F+VEGDSA
Sbjct: 381 KQIVDKVILAATARIAARKARESVQRKSPMGGGGLPGKLADCSSRNPEECELFLVEGDSA 440
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFKKE 356
GGSAKQGR R FQAILPLRGKILNVE+ ++++E+ N+I ALG+ GV G D K+
Sbjct: 441 GGSAKQGRSRAFQAILPLRGKILNVEKAMWHKAFESDEVNNIITALGVRFGVDGNDDSKK 500
Query: 357 A----LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ 412
A LRYHK++I+TDADVDG+HI TL++T FYRY + + G +Y+ PPLYK +GK
Sbjct: 501 ANIDKLRYHKVVIMTDADVDGSHIDTLIMTLFYRYMPEIIENGHLYIANPPLYKCSKGKI 560
Query: 413 VQYCYDDAELKKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIE 469
+YCY + + + N +++ QR+KGLGEM P QLWETT+NPE R+LKQ+ I+
Sbjct: 561 SEYCYTEEARQAFIQKYGDGQENGIHT-QRYKGLGEMNPEQLWETTMNPETRILKQVTID 619
Query: 470 DAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
+AA + +FS LMG V R+E I+ A N+D
Sbjct: 620 NAANVDYIFSMLMGDDVAPRREFIEKNATYANID 653
>gi|335433679|ref|ZP_08558497.1| DNA gyrase subunit B [Halorhabdus tiamatea SARL4B]
gi|334898482|gb|EGM36588.1| DNA gyrase subunit B [Halorhabdus tiamatea SARL4B]
Length = 637
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/505 (46%), Positives = 331/505 (65%), Gaps = 14/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q + G P LT + ++ GT IRFWPD +F T F +T+ R+RELAF
Sbjct: 142 WKQTFDHGAPADDLT-EIEALEDSSETGTSIRFWPDGDIFETT-DFQFSTLENRLRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
LN + I L E ++Q E F + GG+ E+V++LN K PLHD V+ F + +G+
Sbjct: 200 LNSGVEITLADE-----RDQRRETFQYDGGIREFVEYLNETKDPLHDGVIYFEDESEGVQ 254
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++ALQ ++ ++ +AN+I T +GGTH+ G K +LTR +N + + D + +L
Sbjct: 255 VEVALQATTE-LQGSIHAFANNINTREGGTHLTGFKTALTRVVNDYATDNDLLSDIEETL 313
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
GE +REG+T +ISV+ P+P+FEGQTKT+LGN EVR VV+ ++ + L Y E HPDV +
Sbjct: 314 KGEDIREGMTAVISVKHPDPQFEGQTKTKLGNSEVRGVVESAMHQNLGTYFEEHPDVAGA 373
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K++ A KA AA++A +L R+KS L S++LPGKLADC + P E+E+FI EGDSAGG
Sbjct: 374 IVRKAVEAAKARKAAQKAEELTRRKSALESTALPGKLADCQTKEPSEAELFIAEGDSAGG 433
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQ R+ FQA+LP+RGKILNVE+ + +N++I+N+I ALG GV G++F + LRY
Sbjct: 434 SAKQARNPEFQAVLPIRGKILNVEKHRLDRILENDQIRNIITALGTGV-GDEFDIDELRY 492
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
KII TDADVDGAHIRTLLLTFFYR+ + L + G IY PPLY++ + DA
Sbjct: 493 EKIIFATDADVDGAHIRTLLLTFFYRHMRPLLENGHIYAARPPLYRIRYRGETYDAMTDA 552
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
E ++ IQRFKGLGEM P QLW+TT+NPE R LKQ+ I+DAA A+ +FS
Sbjct: 553 ERDEIIEEKCDGNPTQIQRFKGLGEMNPKQLWDTTMNPENRFLKQITIDDAAAADKMFSV 612
Query: 481 LMGARVDTRKELIQN---AANLVNL 502
LMG V+ RK+ I+ AN V++
Sbjct: 613 LMGDAVEPRKQFIKENSPEANWVDI 637
>gi|218283252|ref|ZP_03489313.1| hypothetical protein EUBIFOR_01902 [Eubacterium biforme DSM 3989]
gi|218216007|gb|EEC89545.1| hypothetical protein EUBIFOR_01902 [Eubacterium biforme DSM 3989]
Length = 655
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/477 (47%), Positives = 322/477 (67%), Gaps = 9/477 (1%)
Query: 30 GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA 89
GT +RF D Q+F +D+ + R+R+LAFLN + + L D N+Y +
Sbjct: 186 GTLVRFKADSQIFKDTTVYDYEILNSRLRQLAFLNKDIRLTLT--DKRTPDGLSNDYKYE 243
Query: 90 GGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITIDLALQWCSDAYSDTMLGYANSIRTIDG 148
GG+ EYVQ+LN +K + D V + + + DGI ++ALQ+ +D Y ++ + N+I T +G
Sbjct: 244 GGIIEYVQFLNKNKSTISDKVIYVEGLQDGILAEVALQY-NDGYQSSIYSFCNNIHTHEG 302
Query: 149 GTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKT 208
G H +G + +LTR +N+ K + +K KD +LS + V+EGL IISV+ P+P++EGQTKT
Sbjct: 303 GYHEDGFRMALTRCINTYAKNNNMIK-KDETLSQDDVKEGLVAIISVKHPDPQYEGQTKT 361
Query: 209 RLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVL 268
+LGN EVRK+V E + + +PD+ +I+ K+ A KA +AAK+AR+L R+KS L
Sbjct: 362 KLGNSEVRKIVSNIAGEQINRFFLENPDIAKAIVEKAEIASKARIAAKKARELTRRKSAL 421
Query: 269 RS-SSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKD 327
SSLPGKL DCSS E EI+IVEGDSAGGSAKQGRD + QAILPLRGKILNVE+
Sbjct: 422 DGISSLPGKLTDCSSKDASECEIYIVEGDSAGGSAKQGRDAKTQAILPLRGKILNVEKAR 481
Query: 328 EAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRY 387
+++N+EI+++I A G G++ ED LRYHKI+I+TDADVDG+HI TL+LTF YR+
Sbjct: 482 THRIFENQEIRSMITAFGCGIQ-EDVDVSKLRYHKIVIMTDADVDGSHICTLMLTFLYRF 540
Query: 388 QKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMM 447
K + + G +Y+ PPLYKV++GK++ Y Y + E+ +++ F Y +QR+KGLGEM
Sbjct: 541 MKPVIEGGYVYIAQPPLYKVQKGKKIAYAYKEQEMDQLREEFKDG--YKVQRYKGLGEMD 598
Query: 448 PVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDH 504
QLWETT++P R+LK++ I+DA EA+ VF LMG V+ R+E IQ A NLD+
Sbjct: 599 AEQLWETTMDPHHRVLKRVTIDDAMEADSVFDMLMGEDVEPRREYIQENAVYANLDY 655
>gi|282859419|ref|ZP_06268525.1| DNA gyrase, B subunit [Prevotella bivia JCVIHMP010]
gi|424900188|ref|ZP_18323730.1| DNA gyrase, B subunit [Prevotella bivia DSM 20514]
gi|282587817|gb|EFB93016.1| DNA gyrase, B subunit [Prevotella bivia JCVIHMP010]
gi|388592388|gb|EIM32627.1| DNA gyrase, B subunit [Prevotella bivia DSM 20514]
Length = 656
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/518 (45%), Positives = 341/518 (65%), Gaps = 25/518 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + V ++ GTR +FWPD +FTT + F + +A R+RELA+
Sbjct: 146 YQQEYEKGKPLYPVKV----VGETEKTGTRQQFWPDGTIFTTTV-FQWDVVARRMRELAY 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAG--GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN + I L DPE + F GL+EYV++++ ++ L +DV+ + + G+
Sbjct: 201 LNAGIKITLIDLRPDPETGKTRTEIFHAKDGLKEYVRYVDRHRQHLFNDVIYLKSEKQGV 260
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKD 175
I++A+ + +D Y++ + Y N+I TI+GGTH++G + +LTRTL + SK ++
Sbjct: 261 PIEVAIMYNTD-YTENIHSYVNNINTIEGGTHLQGFRTALTRTLKTYADNDAQISKQIEK 319
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
I ++GE REGLT +ISV+V P+FEGQTKT+LGN EV V Q+V E L+ YLE HP
Sbjct: 320 AKIEITGEDFREGLTAVISVKVAEPQFEGQTKTKLGNSEVSGAVQQAVGEALSAYLEEHP 379
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
I +K + A A +AA++AR+ V++K+V+ LPGKLADCS+ P++ EIF+VEG
Sbjct: 380 SEAKMICNKVVLAATARIAARKARESVQRKNVMTGGGLPGKLADCSNKDPKDCEIFLVEG 439
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDF 353
DSAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV+ ED
Sbjct: 440 DSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEAESVMNIIQSIGVRFGVE-EDS 498
Query: 354 KKEA----LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVER 409
EA LRY KIII+TDADVDG+HI TL++T FYRY + ++G +++ PPLYK
Sbjct: 499 DFEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMPKVIEQGHLFIATPPLYKCTY 558
Query: 410 GKQVQYCYDD----AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQ 465
K +YCY + A + K + +++ QR+KGLGEM P QLWETT++P+ R+LKQ
Sbjct: 559 KKVSEYCYTEQQRQAFIDKYGAGEEGKTIHT-QRYKGLGEMNPEQLWETTMDPKTRLLKQ 617
Query: 466 LVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
+ IE+AA+A+ VFS LMG V+ R+E I+ A N+D
Sbjct: 618 VTIENAADADEVFSMLMGDDVEPRREFIEQNATYANID 655
>gi|377832540|ref|ZP_09815498.1| DNA gyrase, B subunit [Lactobacillus mucosae LM1]
gi|377553732|gb|EHT15453.1| DNA gyrase, B subunit [Lactobacillus mucosae LM1]
Length = 650
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/504 (47%), Positives = 325/504 (64%), Gaps = 8/504 (1%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY+ + G T + V S+ + GTR+ F PD ++F ++ T+ RIREL+
Sbjct: 152 EYYMDFDHGHVKTPMKV-VKEGVSELKHGTRVHFKPDPEIFRETTVYNIKTLTDRIRELS 210
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVD-GIT 120
FLN L I + ED EK E+ + GG+ YV++LN ++ L D + + D GIT
Sbjct: 211 FLNKGLKITI--EDKREEKPTRQEFHYEGGIRHYVEFLNEGQEVLFDPPIYVEGEDKGIT 268
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
++++LQ+ + Y T++ + N+I T +GGTH G K +LTR +N G+KS +K + +L
Sbjct: 269 VEVSLQYTT-GYRSTLMTFTNNIHTYEGGTHETGFKTALTRVINDYGRKSGQLKG-NTTL 326
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ VREGLT ++S++ P+P+FEGQTKT+LGN + R D E +L +PD
Sbjct: 327 SGDDVREGLTAVVSIKHPDPQFEGQTKTKLGNSDARTATDHIFSEMFARFLMENPDTAHK 386
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+ K + A KA +AAKRAR++ R+KS L S LPGKLAD +S PE SE+FIVEGDSAGG
Sbjct: 387 IVEKGMLASKARVAAKRAREVTRKKSGLEISRLPGKLADNTSKDPEISELFIVEGDSAGG 446
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGR R QAILP+RGKILNVE+ + N+EI++L ALG G G DF Y
Sbjct: 447 SAKQGRSRLTQAILPIRGKILNVEKAGMDRILANDEIRSLFTALGTGFGG-DFDITKANY 505
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HK+II+TDADVDGAHIRTLLLT FYRY K + G +Y+ PPLY+V +GK V+Y D
Sbjct: 506 HKLIIMTDADVDGAHIRTLLLTLFYRYMKPMITNGYVYIAQPPLYQVRQGKFVKYVESDE 565
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
EL+ V ++ + IQR+KGLGEM QLWETT++PE+R L ++ ++DAAEA +F
Sbjct: 566 ELQNVLNTLQPSPKPVIQRYKGLGEMDAEQLWETTMDPEKRHLLRVDLDDAAEAEKIFPM 625
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG +V R+E I+ A V NLD
Sbjct: 626 LMGTKVGPRREFIEENAKFVENLD 649
>gi|282878003|ref|ZP_06286811.1| DNA gyrase, B subunit [Prevotella buccalis ATCC 35310]
gi|281299838|gb|EFA92199.1| DNA gyrase, B subunit [Prevotella buccalis ATCC 35310]
Length = 657
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 235/518 (45%), Positives = 339/518 (65%), Gaps = 24/518 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK + + + + +GTR +FWPD +FTT F + IA R+RELAF
Sbjct: 146 YQQEYERGKALYPVKV----IGETNLRGTRQQFWPDGSIFTTT-HFQWDIIARRMRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
LN + I L + E E F A GL+E+V++++ + L D V+ + + GI
Sbjct: 201 LNAGIRITLTDLRPNEEGKTRTEVFHAKDGLKEFVRYVDRHRTHLFDDVIYLKTEKQGIP 260
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKDK 176
I++A+ + +D YS+ + Y N+I TI+GGTH+ G +A+LTRTL + SK ++
Sbjct: 261 IEVAIMYNTD-YSENIHSYVNNINTIEGGTHLTGFRAALTRTLKTYADNDPVISKQIEKA 319
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
I ++GE REGLT +IS++V P+FEGQTKT+LGN EV V Q+V E LT YLE HP
Sbjct: 320 KIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVSGAVQQAVGEALTNYLEEHPT 379
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
I K + A A +AA++AR+ V++K+V+ LPGKLADCS+ P++ EIF+VEGD
Sbjct: 380 EAKQICEKVVLAATARIAARKARESVQRKNVMSGGGLPGKLADCSNKDPKDCEIFLVEGD 439
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFK 354
SAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV GED +
Sbjct: 440 SAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAESVMNIIQSIGVRFGVDGEDDR 499
Query: 355 K---EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE-RG 410
+ + LRY KIII+TDADVDG+HI TL++T FYR+ + +EG +Y+ PPLYK +
Sbjct: 500 EANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPKIIEEGHLYIATPPLYKCTYKN 559
Query: 411 KQVQYCYDDAELKKVKSSFP-----SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQ 465
K +YCY + + + + S ++++ QR+KGLGEM P QLWETT++P+ R+LKQ
Sbjct: 560 KASEYCYTEQQRQAFIDKYAQGEEDSKSIHT-QRYKGLGEMNPEQLWETTMDPKTRLLKQ 618
Query: 466 LVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
+ IE+AA+A+ +FS LMG V+ R+E I+ A N+D
Sbjct: 619 VTIENAADADEIFSMLMGDDVEPRREFIEQNATYANID 656
>gi|225377589|ref|ZP_03754810.1| hypothetical protein ROSEINA2194_03239 [Roseburia inulinivorans DSM
16841]
gi|225210565|gb|EEG92919.1| hypothetical protein ROSEINA2194_03239 [Roseburia inulinivorans DSM
16841]
Length = 640
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/505 (46%), Positives = 336/505 (66%), Gaps = 11/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y GKP + V+ +D+ GT++ FWPD +F + FD++T+ R+RE AF
Sbjct: 142 YFQSYKIGKPDEPV--KVIGECGEDKHGTKVTFWPDGSIFEETV-FDYDTLKQRLRETAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
L L I L +P + ++ +AGG++E+V +LN K+ L+ +V+ +G+ +
Sbjct: 199 LTKGLRIVLTDLRENPVRTY--DFHYAGGIKEFVTYLNKSKEALYPEVIYCEGSGNGVYV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q +D+Y++ L + N+I T +GGTH+ G + +LT+T N+ + +K +KD + +L+
Sbjct: 257 EVAMQH-NDSYNELTLSFVNNIITPEGGTHLAGFRNALTKTFNAYARANKLLKDNEPALT 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT IISV++ P+FEGQTK +LGN E R VD V E LT +LE +P V +I
Sbjct: 316 GDDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGAVDSIVSEQLTYFLEQNPTVAKTI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
KSL A +A AA++ARDL R+K+ L SLPGKLADCS P+ EIFIVEGDSAGGS
Sbjct: 376 CEKSLLAQRAREAARKARDLTRRKTALEGMSLPGKLADCSDKDPKNCEIFIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK R R QAILPLRGKILNVE+ +Y N EI+ +I A G G+ EDF LRY+
Sbjct: 436 AKTARSRATQAILPLRGKILNVEKARLDKIYGNAEIKAMITAFGTGIH-EDFDISKLRYN 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TL+LTF YR+ L EG +Y+ PPLYK+E+ K V Y Y D E
Sbjct: 495 KIIIMTDADVDGAHISTLMLTFLYRFMPDLIKEGHVYLAQPPLYKIEKNKNVWYAYSDDE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED--AAEANVVFS 479
L + + + IQR+KGLGEM QLWETT++PE+R+LK+++I+D +E ++ F+
Sbjct: 555 LNAILTEIGRDGNNKIQRYKGLGEMDAEQLWETTMDPEKRILKRVMIDDESTSEIDITFT 614
Query: 480 SLMGARVDTRKELI-QNAANLVNLD 503
+LMG +V+ R+E I +NA + NLD
Sbjct: 615 TLMGDKVEPRREFIEENAKYVQNLD 639
>gi|427406668|ref|ZP_18896873.1| DNA gyrase, B subunit [Selenomonas sp. F0473]
gi|425708098|gb|EKU71139.1| DNA gyrase, B subunit [Selenomonas sp. F0473]
Length = 684
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 242/503 (48%), Positives = 334/503 (66%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y ++RG L V + + GTR+ F PD ++FT + T+ R+RELAF
Sbjct: 191 YEISFARGNTTEKLR----EVGTSETTGTRVHFVPDPEIFTVT-TYSFETLKHRLRELAF 245
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN +TI L E + +++ + F GG+ +V LN K+ +++ + F D +
Sbjct: 246 LNHGITITLTDERGEEPRSE--TFHFEGGIRSFVSHLNRKKETINEEPIYFNGVKDDTVV 303
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D+Y + + + N+I T +GGTH+ G K +LTR N ++ +KDKD +LS
Sbjct: 304 EIAMQY-NDSYQENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARRLSVLKDKDGNLS 362
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLTC+IS++V P+FEGQTKT+LGN EVR +VD V E LTEY E +P+V +
Sbjct: 363 GEDVREGLTCVISLKVREPQFEGQTKTKLGNSEVRGIVDSIVTEGLTEYFEENPNVTKKV 422
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K+L A +A AA++AR+L R+K+ L SSLPGKLADCS P++ EI+IVEGDSAGGS
Sbjct: 423 LDKALMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPDQCEIYIVEGDSAGGS 482
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILNVE+ ++ N EI+ +I A G G+ GE+F RY
Sbjct: 483 AKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGI-GEEFDLSKRRYS 541
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTLLLTFFYRY + L D G +Y+ PPLY++ + K+ Y Y D E
Sbjct: 542 KIIIMTDADVDGAHIRTLLLTFFYRYMRPLVDHGHVYIAQPPLYQIRKDKKHFYTYTDEE 601
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
K + + +IQR+KGLGEM P QLWETT+NP +R + ++ EDA A+ +F+ L
Sbjct: 602 QAKKLDEIGRDGV-TIQRYKGLGEMNPEQLWETTMNPTERTMLRVAAEDAEAADELFTIL 660
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V+ R++ I+ A LV NLD
Sbjct: 661 MGDKVEPRRQFIEENARLVRNLD 683
>gi|302384449|ref|YP_003820271.1| DNA gyrase subunit B [Clostridium saccharolyticum WM1]
gi|302195077|gb|ADL02648.1| DNA gyrase, B subunit [Clostridium saccharolyticum WM1]
Length = 637
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 236/505 (46%), Positives = 335/505 (66%), Gaps = 12/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GK T V+ D GT++ F PD ++F + +D++T+ R+RE AF
Sbjct: 140 YKQRYEKGK--TMYPLKVIGECGPDEHGTKVTFLPDGEIFEETV-YDYDTLKIRLRETAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
L L I LR E D ++ ++ + GG++E++ +LN K PL+D V + + DG+ +
Sbjct: 197 LTKNLKIILRDEREDKHEHVFH---YEGGIKEFITYLNKGKTPLYDQVFYCEGTKDGVYV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q +D+Y++ + + N+I T +GGTH+ G K +LT TLN +K++ +K+ + +LS
Sbjct: 254 EVAMQH-NDSYTENIYSFVNNINTPEGGTHLAGFKNALTTTLNDYARKNRLLKENETNLS 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT IISV++ P+FEGQTK +LGN E R VD ++E T YLE +P + +I
Sbjct: 313 GEDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGAVDNLLREQFTYYLEQNPSLSKTI 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
KS+ A +A AA++ARDL R+K+ L +LPGKLADCS PE EI+IVEGDSAGGS
Sbjct: 373 CDKSILAQRARAAARKARDLTRRKTALEGMALPGKLADCSDKNPENCEIYIVEGDSAGGS 432
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK R R QAILPLRGKILNVE+ +Y N EI+ +I A G G+ EDF LRYH
Sbjct: 433 AKTARSRNTQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGIH-EDFDLSKLRYH 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TLLLTF YR+ L EG +Y+ PPLYKVE+ K+V Y Y D E
Sbjct: 492 KIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYKVEKNKKVWYAYSDEE 551
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED--AAEANVVFS 479
L + + IQR+KGLGEM QLWETT++PE+R+L ++++ + +E ++ F+
Sbjct: 552 LNAILKEIGRDNNNKIQRYKGLGEMDAEQLWETTMDPERRVLLRVIMNEDTTSEMDLTFT 611
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
+LMG +V+ R+E I+ NA + NLD
Sbjct: 612 TLMGDQVEPRREFIEANAKYVQNLD 636
>gi|171780013|ref|ZP_02920917.1| hypothetical protein STRINF_01800 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281361|gb|EDT46796.1| DNA gyrase, B subunit [Streptococcus infantarius subsp. infantarius
ATCC BAA-102]
Length = 650
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/508 (44%), Positives = 336/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L + DR GT + F PD ++FT FD + +A RI+ELAF
Sbjct: 150 HYQEYRRGHVVDDLKV----IGDTDRHGTTVHFTPDGEIFTETTVFDFDKLAKRIQELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E+ Q+ Y + GG+ YV+++N +K + D + ++DGI++
Sbjct: 206 LNRGLRISITDKREGIEQEQH--YHYEGGISSYVEFINENKDVIFDKPIYTDGEMDGISV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N +++K +K+KD +L+
Sbjct: 264 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKLLKEKDDNLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ + +L +P + I
Sbjct: 323 GDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSDAFGRFLLENPQIAKKI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS +E+FIVEGDSAGGS
Sbjct: 383 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDATMNELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR QAILP+RGKILNVE+ + NEEI++L A+G G G DF RYH
Sbjct: 443 AKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GADFDVTKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY-----C 416
K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G +++
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGA 561
Query: 417 YDDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+AEL+ + + + S+QR+KGLGEM QLW TT++PE R++ ++ ++DAAEA+
Sbjct: 562 NQEAELQAAIERYSNGRSKPSVQRYKGLGEMDDHQLWATTMDPENRLMARVSVDDAAEAD 621
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG +V+ R+E I+ A LD
Sbjct: 622 KIFDMLMGDKVEPRREFIEENAVYSTLD 649
>gi|303235765|ref|ZP_07322372.1| DNA gyrase, B subunit [Prevotella disiens FB035-09AN]
gi|302484212|gb|EFL47200.1| DNA gyrase, B subunit [Prevotella disiens FB035-09AN]
Length = 683
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 235/516 (45%), Positives = 335/516 (64%), Gaps = 21/516 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ ++ V D+ GTR +FWPD +FTT I + + +A R+RELAF
Sbjct: 173 YQQEYEKGKPLYSVKI----VGDTDKTGTRQQFWPDASIFTTTI-YQWDIVARRMRELAF 227
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
LN + I L + E E F A GL+E+V++++ + L D V+ + + GI
Sbjct: 228 LNAGIKITLTDLRPNEEGKTKQEVFHAQEGLKEFVRYVDRHRTHLFDDVIYLKTEKQGIP 287
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKDK 176
I++A+ + +D Y++ + Y N+I TI+GGTH+ G + +LTRTL + +K ++
Sbjct: 288 IEVAIMYNND-YNENIHSYVNNINTIEGGTHLTGFRTALTRTLKAYADNDTQIAKQIEKA 346
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
I ++GE REGLT +IS++V P+FEGQTKT+LGN EV V Q+V E L+ YLE +P
Sbjct: 347 KIEITGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVSGAVQQAVGEALSYYLEENPA 406
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
I K + A A +AA++AR+ V++K+V+ LPGKLADCS+ P+E EIF+VEGD
Sbjct: 407 EAKLICDKVILAATARIAARKARESVQRKNVMTGGGLPGKLADCSNKDPKECEIFLVEGD 466
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGE-DF 353
SAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV GE DF
Sbjct: 467 SAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEAESVMNIIQSIGVRFGVDGESDF 526
Query: 354 KK--EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK 411
+ + LRY KIII+TDADVDG+HI TL++T FYRY + +EG +Y+ PPLYK K
Sbjct: 527 EANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMPRVIEEGHLYIATPPLYKCTFKK 586
Query: 412 QVQYCYDDAE----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLV 467
+YCY + + L+K N QR+KGLGEM P QLW+TT+NP+ R+LKQ+
Sbjct: 587 VSEYCYTEQQRLQFLEKYVGGDEENKALHTQRYKGLGEMNPEQLWDTTMNPKTRLLKQVT 646
Query: 468 IEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
IE+A A+ +FS LMG V+ R+E I+ A N+D
Sbjct: 647 IENATTADEMFSMLMGDDVEPRREFIEQNATYANID 682
>gi|448311928|ref|ZP_21501681.1| DNA gyrase subunit B [Natronolimnobius innermongolicus JCM 12255]
gi|445603549|gb|ELY57511.1| DNA gyrase subunit B [Natronolimnobius innermongolicus JCM 12255]
Length = 643
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/498 (45%), Positives = 334/498 (67%), Gaps = 7/498 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ + G+PV + V +++ + GT++RFWPD +F T F +T++ R+RELAF
Sbjct: 142 HRHAFEGGEPVGDMQ-EVREMNADEETGTQVRFWPDTSIFETE-GFSFSTLSNRLRELAF 199
Query: 63 LNPKLTIALR--KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN + I LR +E++D + Y + GG+ E+V++LN + +HD V+ F + I
Sbjct: 200 LNSGVRITLRDEREETDDGDVVEDTYEYEGGIREFVKYLNETRSAMHDDVIYFEDEAQNI 259
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
I++A+Q ++ ++ +AN+I T +GGTH+ G K +LTRT+N K + + D + +
Sbjct: 260 QIEVAMQ-ATEELQGSIHAFANNINTREGGTHLTGFKTALTRTVNDYAKDNDMLGDLETN 318
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L GE +REGLT +ISV+ P+P+FEGQTKT+LGN EVR +V+ ++ E L Y E HPD
Sbjct: 319 LKGEDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESAMHEGLGTYFEEHPDTAQ 378
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I++K++ A KA AA++A +L R+KS L S+SLPGKLADC + PE +E+FI EGDSAG
Sbjct: 379 AIVTKAVEAAKARKAAQKAEELTRRKSALESTSLPGKLADCQTKDPETAELFIAEGDSAG 438
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQ RD FQA+LP++GKILNVE+ + +N+EI+N+I A+G G+ G++F E +R
Sbjct: 439 GSAKQARDPEFQAVLPIKGKILNVEKHRLDRILENDEIRNMITAIGAGI-GDEFDVEDVR 497
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
Y KII+ TDADVDGAHIRTL+LTFFYR+ + L + G +Y PPLY++ + D
Sbjct: 498 YKKIIMATDADVDGAHIRTLMLTFFYRHMRPLLEGGYVYATQPPLYRIRYRGETYDAMTD 557
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
E ++ + +QRFKGLGEM P QLWETT+NP+ R+LKQ+ +EDAA A+ +FS
Sbjct: 558 TERDEIVAEKCDGNPSQVQRFKGLGEMNPEQLWETTMNPDNRILKQITVEDAAAADKMFS 617
Query: 480 SLMGARVDTRKELIQNAA 497
LMG V+ RK+ I+ A
Sbjct: 618 VLMGDAVEPRKQFIKENA 635
>gi|228477165|ref|ZP_04061803.1| DNA gyrase, B subunit [Streptococcus salivarius SK126]
gi|228251184|gb|EEK10355.1| DNA gyrase, B subunit [Streptococcus salivarius SK126]
Length = 650
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/508 (44%), Positives = 340/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG V L + ++ GT + F PD ++F +FD +A RI+ELAF
Sbjct: 150 HFQEYKRGVVVADLAV----IGETEKHGTTVHFTPDPEIFQETTEFDFGKLAKRIQELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ D Q Y + GG+ YV+++N +K + D + ++DGI++
Sbjct: 206 LNKGLRISIT--DKREGLKQEKHYHYEGGITSYVKYINENKDVIFDEPIYTDGEMDGISV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N +++K +K+KD +L+
Sbjct: 264 EVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKILKEKDDNLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IISV+ PNP+FEGQTKT+LGN EV K+ ++ E L+ +L +P + I
Sbjct: 323 GDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEALSRFLLENPAIAKKI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS E +E+FIVEGDSAGGS
Sbjct: 383 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G +F RYH
Sbjct: 443 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GAEFDVSKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYDDA 420
K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y A
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGA 561
Query: 421 ELK-KVKSSFPSNALY----SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ + K++++ + ++ ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+
Sbjct: 562 DQEDKLRAALENYSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAEAD 621
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG +V+ R+E I+ A LD
Sbjct: 622 KIFDMLMGDKVEPRREFIEENAVYSTLD 649
>gi|253581066|ref|ZP_04858326.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847602|gb|EES75572.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 641
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 236/505 (46%), Positives = 339/505 (67%), Gaps = 11/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK T V+ D+ GT + F PDK++F + +D++ + R+RE+AF
Sbjct: 143 YQQRYERGK--TMYPLKVVGDCQPDKTGTTVVFLPDKEIFEETV-YDYDILKQRLREMAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
L L I+L+ E+ + + + GG+ E+V +LN K+ L+ +++ +G+++
Sbjct: 200 LTKGLKISLKDTREGMEREKV--FHYEGGIREFVSYLNRSKEALYPEIIYCEGQQNGVSV 257
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q +D+Y++ G+ N+I T +GGTHI G + +LT+T N +K+K +KD + +LS
Sbjct: 258 EVAMQH-NDSYTENCYGFVNNINTPEGGTHIVGFRNALTKTFNDYARKNKLLKDSEPNLS 316
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT I+SV++ NP+FEGQTK +LGN E R VD V + L +LE +P V +
Sbjct: 317 GDDIREGLTAIVSVKIENPQFEGQTKQKLGNSEARGAVDSVVSKQLEIFLEQNPTVAKTT 376
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ KS+ A +A AA++ARDL R+KS L + SLPGKLADCS PE EI+IVEGDSAGGS
Sbjct: 377 VEKSVLAQRAREAARKARDLTRRKSALDNMSLPGKLADCSDKNPENCEIYIVEGDSAGGS 436
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK R+R QAILPLRGKILNVE+ +Y N EI+ +I A G G+ EDF LRYH
Sbjct: 437 AKTARNRVTQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGIH-EDFDISKLRYH 495
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TLLLTF YR+ L +G +Y+ PPLYKVE+ K+V Y YDD E
Sbjct: 496 KIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYKVEKNKKVWYAYDDDE 555
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA--EANVVFS 479
L ++ + + IQR+KGLGEM QLWETT++PE+R+L ++ +++AA E ++ F+
Sbjct: 556 LNQILTEIGRDGNNKIQRYKGLGEMDADQLWETTMDPEKRILLKVTMDEAATSEIDLTFT 615
Query: 480 SLMGARVDTRKELIQNAANLV-NLD 503
+LMG +V+ R+E I+ A V NLD
Sbjct: 616 TLMGDKVEPRREFIEENARFVKNLD 640
>gi|375255406|ref|YP_005014573.1| DNA gyrase subunit B [Tannerella forsythia ATCC 43037]
gi|363408013|gb|AEW21699.1| DNA gyrase, B subunit [Tannerella forsythia ATCC 43037]
Length = 652
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/510 (44%), Positives = 329/510 (64%), Gaps = 15/510 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q++S+GKP+ + + DR GT I F PD VFT Q+ ++ +A R+RELAF
Sbjct: 148 YIQEFSQGKPLGD----IRETGTIDRTGTIISFKPDDTVFTVT-QYKYDILANRLRELAF 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAG--GLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN + + L + E + F GL+E+V++++ K+ + HDV+ + GI
Sbjct: 203 LNAGIYLTLTDKREKKEDGSFKSEVFHSNEGLKEFVRYIDKSKESMIHDVIHIVTEKQGI 262
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+ + + +Y++++ Y N I TI+GGTH+ G + LTRTL + SK ++ +
Sbjct: 263 PVEVAMTYNT-SYNESVFSYVNDINTIEGGTHLSGFRRGLTRTLKKYAEDSKLLEKAKVE 321
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+ G+ REGLT +IS++V P+FEGQTKT+LGN EV VD +V E L YLE HP
Sbjct: 322 IQGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVMGAVDMAVGEALGYYLEEHPKEAK 381
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A A AA++AR++V++KS LPGKLADCSS E E+F+VEGDSAG
Sbjct: 382 AIVDKVILAATARQAARKAREMVQRKSPFSGGGLPGKLADCSSKDAAECELFLVEGDSAG 441
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE--- 356
G+AKQGRDR FQAILPLRGKILNVE+ E ++ +EEIQN+ +A+G+ + ED KE
Sbjct: 442 GTAKQGRDRNFQAILPLRGKILNVEKAMEHRIFDSEEIQNIFKAMGVTIGTEDDPKELNL 501
Query: 357 -ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
LRY KIII+TDADVDG+HI TL+LTFF+R + L ++G +Y+ PPLY ++GK +Y
Sbjct: 502 SKLRYQKIIIMTDADVDGSHIATLILTFFFRRMRGLIEKGYVYLATPPLYLCKKGKVEEY 561
Query: 416 CYDDAELKKVKSSFPSNALYSI--QRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
C+ + + +K ++ I QR+KGLGEM QLW+TT+NPE R LKQ+ IE+A E
Sbjct: 562 CWTEQQRQKFIDTYGGGNESQIHTQRYKGLGEMNDHQLWDTTMNPENRTLKQITIENAVE 621
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ F+ LMG V R++ I+ A N+D
Sbjct: 622 ADSTFAMLMGEDVAPRRDFIEENATYANID 651
>gi|268324621|emb|CBH38209.1| DNA gyrase subunit B [uncultured archaeon]
Length = 635
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 232/505 (45%), Positives = 341/505 (67%), Gaps = 14/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y GK V + ++ GTR+RF PD +F +FD + +A R+RELAF
Sbjct: 140 YYQRYEHGKAVCEVKELSYTGENNGECGTRVRFKPDSTIFGV-YEFDAHLLATRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN L+++L+ E S E+ + + GG+ +++++N +KK LH + F + D + +
Sbjct: 199 LNRGLSLSLKDERSGEER----AFKYEGGITSFLEYINRNKKVLHSPITFEGEKDDVKVA 254
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+ LQ+ +D+Y++ + + N+++T++GG H+ G KA+LTR LN GK + +K ++L G
Sbjct: 255 IGLQY-NDSYAENIFSFVNNVKTVEGGKHLSGFKAALTRVLNEYGKSNNMLKK--VNLDG 311
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+ VREGL +IS+++ P+FEGQTKT+LGN EV+ +V+ V+E+L ++L+ +P D+I+
Sbjct: 312 DDVREGLAAVISLKLREPQFEGQTKTKLGNSEVKGIVESFVREHLWDFLDENPKDGDAII 371
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
K+L A +A AA+ AR++VR+K + SLPGKLADCS P + EI+IVEGDSAGGSA
Sbjct: 372 RKALEASRAREAARHAREIVRKKDSF-ADSLPGKLADCSERDPAKKEIYIVEGDSAGGSA 430
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQ RD+ FQAILP+RGKILNVE+ + K+ EI+ LI ALG G+ G+DF E RY+K
Sbjct: 431 KQARDKNFQAILPIRGKILNVEKARLDKILKSNEIRTLITALGAGI-GDDFDMEKARYNK 489
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
III++DADVDGAHIRTLLLTFFYRY + L IYV +PPLY V++GK+++Y + D E
Sbjct: 490 IIIMSDADVDGAHIRTLLLTFFYRYMQELVSANHIYVALPPLYMVKKGKEIRYAFSDDEY 549
Query: 423 KKVKSSF---PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
+ +A IQ +KGLGEM P QLWETT+NP R +K + +EDAAE + +F+
Sbjct: 550 VNILDELNVKEGDAGVKIQHYKGLGEMNPEQLWETTMNPATRGIKLVTLEDAAEVDWLFT 609
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG V+ R+ IQ +A ++NLD
Sbjct: 610 VLMGEEVEPRRNFIQAHAKEVMNLD 634
>gi|55821497|ref|YP_139939.1| DNA gyrase subunit B [Streptococcus thermophilus LMG 18311]
gi|55823426|ref|YP_141867.1| DNA gyrase subunit B [Streptococcus thermophilus CNRZ1066]
gi|116628216|ref|YP_820835.1| DNA gyrase subunit B [Streptococcus thermophilus LMD-9]
gi|386087123|ref|YP_006002997.1| DNA gyrase subunit B [Streptococcus thermophilus ND03]
gi|387910223|ref|YP_006340529.1| DNA gyrase subunit B [Streptococcus thermophilus MN-ZLW-002]
gi|55737482|gb|AAV61124.1| DNA gyrase B subunit [Streptococcus thermophilus LMG 18311]
gi|55739411|gb|AAV63052.1| DNA gyrase B subunit [Streptococcus thermophilus CNRZ1066]
gi|116101493|gb|ABJ66639.1| DNA gyrase subunit B [Streptococcus thermophilus LMD-9]
gi|312278836|gb|ADQ63493.1| DNA gyrase subunit B [Streptococcus thermophilus ND03]
gi|387575158|gb|AFJ83864.1| DNA gyrase subunit B [Streptococcus thermophilus MN-ZLW-002]
Length = 650
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 227/510 (44%), Positives = 343/510 (67%), Gaps = 19/510 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y RG V L + + GT + F PD ++F +FD +A R +ELAF
Sbjct: 150 HFQEYKRGVVVDDLRI----IGETEEHGTTVHFIPDPEIFQETTEFDFGKLAKRFQELAF 205
Query: 63 LNPKLTIAL--RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN L I++ ++E + EK+ Y + GG+ YV+++N +K + D + ++DGI
Sbjct: 206 LNKGLRISIIDKREGLEQEKH----YHYEGGITSYVKYINENKDVIFDEPIYTYGEMDGI 261
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++A+Q+ + Y +T++ +AN+I T +GGTH +G + +LTR +N +++K +K+KD +
Sbjct: 262 SVEVAMQYTT-GYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKILKEKDDN 320
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+G+ VREGLT IISV+ PNP+FEGQTKT+LGN EV K+ ++ E L+ +L +P +
Sbjct: 321 LTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEALSRFLLENPAIAK 380
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS PE +E+FIVEGDSAG
Sbjct: 381 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNPEMNELFIVEGDSAG 440
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G +F R
Sbjct: 441 GSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GSEFDVSKAR 499
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCYD 418
YHK++I+TDADVDGAHIRTLLLT YR+ + + G +Y+ PP+Y V+ G ++ +Y
Sbjct: 500 YHKLVIMTDADVDGAHIRTLLLTLIYRFMHPVLEAGYVYIAQPPIYGVKVGSEIKEYIQP 559
Query: 419 DAEL-KKVKSSFPSNALY----SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
A+ +K++++ + ++ ++QR+KGLGEM QLWETT++PE R+L ++ ++DAAE
Sbjct: 560 GADQEEKLRAALENYSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLLARVSVDDAAE 619
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A+ +F LMG +V+ R+E I+ A LD
Sbjct: 620 ADKIFDMLMGDKVEPRREFIEENAVYSTLD 649
>gi|302391744|ref|YP_003827564.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501]
gi|302203821|gb|ADL12499.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501]
Length = 637
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 235/503 (46%), Positives = 339/503 (67%), Gaps = 12/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +G PVT +S + GT+I F PD+ +F +++ + +A R++E AF
Sbjct: 144 YTQQYEKGVPVTEFE----KSNSTTKTGTKIEFKPDEDIFDN-VKYKFDVLANRLQESAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN L I+L D+ P + Y + GGLE ++ +LN D+ LHD +V ++VD +
Sbjct: 199 LNKGLKISLV--DTRPGLEKEVTYQYDGGLEAFIDYLNQDRDLLHDDIVYLEEEVDDTYV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A Q+ + ++++ + +AN+I T DGG H+ G K +LTR N+ K + +K D L+
Sbjct: 257 EVAFQY-NKSFNERIYSFANNINTHDGGYHLTGFKTALTRAFNNYAKDNNLLKKSDPKLT 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G +REGLT +++V++ P+FEGQTK +LGN E+R VV+ +V YL +YL H D+ +
Sbjct: 316 GRDLREGLTAVVNVKLTEPQFEGQTKAKLGNSEIRSVVEGAVYNYLNQYLPRHHDMAKEV 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
++K+L A+KA AAK+A++L ++K VL ++SLPGKL+DCSS EESE+++VEGDSAGGS
Sbjct: 376 INKALEAVKARKAAKKAKELTKRKGVLNNNSLPGKLSDCSSRKSEESELYLVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILPL+GKILNVER + N EI +I ALG G+ GE+F + LRYH
Sbjct: 436 AKQGRNRDFQAILPLKGKILNVERARLNKIINNNEIAAIITALGTGI-GEEFNIDKLRYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TL+LT FYRY L EG +YV PPLYKV +Y Y D +
Sbjct: 495 KIIIMTDADVDGAHICTLILTLFYRYMPELIREGHVYVAQPPLYKVTYRGDEEYIYTDKQ 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+K + + + SIQR+KGLGEM P QLWETT+NPE R L+++++++ EA+ +F+ L
Sbjct: 555 LQKYLADLDRSKV-SIQRYKGLGEMNPSQLWETTMNPENRKLQEIMVDEEREADSIFTRL 613
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG++ R+E I A+L NLD
Sbjct: 614 MGSKAKLRREFIMANADLASNLD 636
>gi|334135652|ref|ZP_08509135.1| DNA gyrase, B subunit [Paenibacillus sp. HGF7]
gi|333606847|gb|EGL18178.1| DNA gyrase, B subunit [Paenibacillus sp. HGF7]
Length = 638
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 238/506 (47%), Positives = 338/506 (66%), Gaps = 18/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y +GKP L + + GT + F PD ++FT ++++ + RIRELAF
Sbjct: 145 HEQEYRQGKPQYDLRI----IGETEETGTTVTFTPDPEIFTETTEYEYEILQSRIRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN + I L E +D ++ + + GG++ +V+ LN +K+ LH V G +++
Sbjct: 201 LNKGIEINLIDERTDTSES----FMYEGGIKSFVEHLNRNKEALHQPPIYVEGSKEN--- 253
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
I +++A+Q+ +D+Y++ + +AN+I T +GGTH G K++LTR LN +K+ +K+
Sbjct: 254 IQVEVAIQY-NDSYTENIYSFANNINTHEGGTHESGFKSALTRILNDYARKTNAIKESGS 312
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+LSG+ VREGL IISV++P P+FEGQTKT+LGN EVR +VD E L E+L+ +P +
Sbjct: 313 NLSGDDVREGLAAIISVKIPEPQFEGQTKTKLGNSEVRGIVDSLFAEKLLEFLDENPAIA 372
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I+ K L A +A AA++AR+L R+KSVL SSLPGKLADCSS SE++IVEGDSA
Sbjct: 373 KKIVEKGLQASRAREAARKARELTRRKSVLEVSSLPGKLADCSSKDASISELYIVEGDSA 432
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAKQGRDR FQAILP+RGKILNVE+ + N EI+ +I A+G G+ +DF
Sbjct: 433 GGSAKQGRDRHFQAILPIRGKILNVEKARLDKILSNLEIRAIITAMGTGIS-DDFDITKA 491
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHK+II+TDADVDGAHIRTLLLT+FYRY + L + G +Y+ PPLYK+ERGK +Y Y
Sbjct: 492 RYHKLIIMTDADVDGAHIRTLLLTYFYRYMRKLIEVGYVYIAQPPLYKLERGKVARYAYS 551
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
D + ++ F A ++QR+KGLGEM QLW+TT++PE R L Q+ I+DA +A+ +F
Sbjct: 552 DKQRDEIMKEFGEGAKVNVQRYKGLGEMDAEQLWDTTMDPETRTLLQVTIQDAMDADSIF 611
Query: 479 SSLMGARVDTRKELIQNAANLV-NLD 503
+LMG V+ R+ I A V NLD
Sbjct: 612 DTLMGDNVEPRRNFIHQHAKYVKNLD 637
>gi|256851678|ref|ZP_05557066.1| DNA gyrase, B subunit [Lactobacillus jensenii 27-2-CHN]
gi|260661605|ref|ZP_05862517.1| DNA gyrase, B subunit [Lactobacillus jensenii 115-3-CHN]
gi|297205287|ref|ZP_06922683.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
jensenii JV-V16]
gi|256615636|gb|EEU20825.1| DNA gyrase, B subunit [Lactobacillus jensenii 27-2-CHN]
gi|260547662|gb|EEX23640.1| DNA gyrase, B subunit [Lactobacillus jensenii 115-3-CHN]
gi|297149865|gb|EFH30162.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
jensenii JV-V16]
Length = 651
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 230/478 (48%), Positives = 313/478 (65%), Gaps = 6/478 (1%)
Query: 28 RQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYF 87
+ GT + F+PD +FT I FD + RI+ELAFLN L + D + + Y
Sbjct: 177 QHGTIVHFYPDPDIFTETIVFDDKILKKRIQELAFLNKGLKLTFT--DKRKSSAETDVYH 234
Query: 88 FAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTI 146
+ GG++EYV +L+ ++ L D V D DGI +++ALQ+ + Y TM+ +AN+I T
Sbjct: 235 YEGGIKEYVAFLDKKEEKLFDTPVYVEGDYDGINVEVALQYTT-GYKTTMMTFANNIHTY 293
Query: 147 DGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQT 206
+GG H G K +LTR +N +K+K KD D +LSGE +REG+T +IS++ PNP+FEGQT
Sbjct: 294 EGGMHEAGFKTALTRVINDYARKAKIFKDSDTNLSGEDIREGMTAVISIKHPNPQFEGQT 353
Query: 207 KTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKS 266
KT+LGN + R VD++ E +++L +P V I+ K A KA +AAKRAR++ R+KS
Sbjct: 354 KTKLGNSDARAAVDKAFSEAFSKFLLENPSVGRKIVEKGQLAEKARIAAKRAREVTRKKS 413
Query: 267 VLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERK 326
L ++LPGKLAD +S PE SE+FIVEGDSAGGSAKQGR R QAILP+RGKILNVE+
Sbjct: 414 GLEIANLPGKLADNTSNDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKA 473
Query: 327 DEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYR 386
+ N+EI+ L ALG G G DF + RYHK+II+TDADVDGAHIRTLLLT FYR
Sbjct: 474 SMDRILANQEIRTLFTALGTGF-GADFDVKKARYHKLIIMTDADVDGAHIRTLLLTLFYR 532
Query: 387 YQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEM 446
Y K + G +Y+ PPLY+V++GK ++Y D EL S + ++QR+KGLGEM
Sbjct: 533 YMKPMIKAGYVYIARPPLYQVKQGKIIKYLDSDEELHDYLGSLQPSPKPTVQRYKGLGEM 592
Query: 447 MPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 503
QLWETT++PE R L ++ A +A+ VF LMG V R++ I +NA + NLD
Sbjct: 593 SADQLWETTMDPENRRLDRVDPAYAEDADAVFEMLMGNEVGPRRDFITKNAKYVENLD 650
>gi|167759582|ref|ZP_02431709.1| hypothetical protein CLOSCI_01939 [Clostridium scindens ATCC 35704]
gi|336421486|ref|ZP_08601644.1| DNA gyrase, B subunit [Lachnospiraceae bacterium 5_1_57FAA]
gi|167662809|gb|EDS06939.1| DNA gyrase, B subunit [Clostridium scindens ATCC 35704]
gi|336000765|gb|EGN30912.1| DNA gyrase, B subunit [Lachnospiraceae bacterium 5_1_57FAA]
Length = 644
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 239/506 (47%), Positives = 333/506 (65%), Gaps = 12/506 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK L V+ D+ GT++ F+PD +F +FD++ + R RE+AF
Sbjct: 145 YKQRYERGKVAQKLA--VIGECEPDKTGTKVTFFPDDTIFEET-EFDYDILKQRFREMAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
L L I LR D PE+ + F + GG++++V++LN K PL+ D++ +G+
Sbjct: 202 LTKGLKIILR--DERPEEEPIEKVFHYEGGIKQFVEYLNRSKTPLYEDIIYCEGMANGVA 259
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q +D+YSD G+ N+I T +GGTHI G + +LT+T N +K+K ++D + +L
Sbjct: 260 VEVAMQH-NDSYSDNTYGFVNNITTPEGGTHIVGFRNALTKTFNDYARKNKLLRDNEPNL 318
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGE +REGLT IISV++ +P+FEGQTK +LGN E R VD V L YLE +P +
Sbjct: 319 SGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDSIVSNQLVVYLEQNPSIAKM 378
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
+ KS+ A +A AA++ARDL R+KS L SLPGKLADCS P+ EI+IVEGDSAGG
Sbjct: 379 TIEKSVMAQRAREAARKARDLTRRKSALDGMSLPGKLADCSDKDPKNCEIYIVEGDSAGG 438
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK RDR QAILPLRGKILNVE+ +Y N EI+ +I A G G+ +DF LRY
Sbjct: 439 SAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEIKAMITAFGTGIH-DDFDISKLRY 497
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIII+TDADVDGAHI TLLLTF YR+ L EG +Y+ PPLYK+E+ K+V Y Y D
Sbjct: 498 HKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYMAQPPLYKLEKNKKVWYAYSDE 557
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI--EDAAEANVVF 478
EL + + + IQR+KGLGEM QLW+TT++PE R+L ++ + E +E ++ F
Sbjct: 558 ELDGILTEVGRDGNNKIQRYKGLGEMDAEQLWDTTMDPEHRVLLRVTMDEETTSELDLTF 617
Query: 479 SSLMGARVDTRKELI-QNAANLVNLD 503
++LMG +V+ R+E I +NA + NLD
Sbjct: 618 TTLMGDKVEPRREFIEENAKYVKNLD 643
>gi|373501103|ref|ZP_09591470.1| DNA gyrase, B subunit [Prevotella micans F0438]
gi|371950694|gb|EHO68548.1| DNA gyrase, B subunit [Prevotella micans F0438]
Length = 657
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 230/517 (44%), Positives = 335/517 (64%), Gaps = 22/517 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + + + ++ GTR +FWPD +FTT F + +A R+RELA+
Sbjct: 146 YQQEYEKGKPLYPVKI----IGTTEKTGTRQQFWPDNSIFTTTT-FQWDIVARRMRELAY 200
Query: 63 LNPKLTIALRKEDSDPE--KNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGI 119
LN + I L PE K + + GL+E+V++++ ++ L +DV+ + + GI
Sbjct: 201 LNAGIKIILTDMHPHPETGKTRTETFHAEDGLKEFVRYVDRHRQHLFNDVIYLKTEKQGI 260
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKD 175
I++A+ + +D Y++ + Y N+I TI+GGTH+ G + +LTRTL + SK ++
Sbjct: 261 PIEIAIMYNTD-YTENIHSYVNNINTIEGGTHLTGFRTALTRTLKAYADGEPTISKQIEK 319
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
I ++GE REGLT +IS++V P+FEGQTKT+LGN EV V Q+V E L+ YLE HP
Sbjct: 320 AKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVSGAVQQAVGEALSNYLEEHP 379
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
+ I +K + A A +AA+ AR+ V++K+V+ LPGKLADCS P++ EIF+VEG
Sbjct: 380 NEAKLICNKVILAATARIAARNARESVQRKNVMSGGGLPGKLADCSKKDPKDCEIFLVEG 439
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGED- 352
DSAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV+GED
Sbjct: 440 DSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEAESVMNIIQSIGVRFGVEGEDD 499
Query: 353 --FKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG 410
+ LRY KIII+TDADVDG+HI TL++T FYR+ + +EG +Y+ PPLYK
Sbjct: 500 YEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPKVIEEGHLYIATPPLYKCTYK 559
Query: 411 KQVQYCYDDAE----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQL 466
K +YCY + + + K QR+KGLGEM P QLWETT++P+ R+LKQ+
Sbjct: 560 KISEYCYTEQQRQMFIDKYGDGTEDGKNIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQV 619
Query: 467 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
IE+AAEA+ +FS LMG V+ R+E I+ A N+D
Sbjct: 620 NIENAAEADEIFSMLMGDDVEPRREFIEQNATYANID 656
>gi|153812024|ref|ZP_01964692.1| hypothetical protein RUMOBE_02417 [Ruminococcus obeum ATCC 29174]
gi|149831923|gb|EDM87009.1| DNA gyrase, B subunit [Ruminococcus obeum ATCC 29174]
Length = 641
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 238/506 (47%), Positives = 336/506 (66%), Gaps = 11/506 (2%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
+Y Q+Y RG T + V + GT++ F PDK++F I +D++ + R+RE+A
Sbjct: 142 KYQQRYERGH--TMYPLKEIGVCDPEETGTKVTFLPDKEIFEETI-YDYDILKQRLREMA 198
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGIT 120
FL L I L+ D EK + + + GG+ E+V +LN K+ L+ +V+ + DG+
Sbjct: 199 FLTKGLRIVLKDTREDQEKEK--AFHYEGGIREFVTYLNRSKEALYPEVIYCEGEKDGVM 256
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+++A+Q +D+Y++ G+ N+I T +GGTHI G + +LT+T N +K+K +KD + +L
Sbjct: 257 VEVAMQH-NDSYTENSYGFVNNINTPEGGTHIVGFRNALTKTFNDYARKNKLLKDSEPNL 315
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SG+ +REGLT I+SV++ P+FEGQTK +LGN E R VD V + L +LE +P V +
Sbjct: 316 SGDDIREGLTAIVSVKIEEPQFEGQTKQKLGNSEARGAVDFVVSKQLEIFLEQNPTVAKA 375
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
+ KS+ A +A AA++ARDL R+KS L SLPGKLADCS PE EI+IVEGDSAGG
Sbjct: 376 TVEKSVLAQRAREAARKARDLTRRKSALDGMSLPGKLADCSDKNPENCEIYIVEGDSAGG 435
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAK R+R QAILPLRGKILNVE+ +Y N EI+ +I A G G+ EDF LRY
Sbjct: 436 SAKTARNRATQAILPLRGKILNVEKARLDRIYSNAEIKAMITAFGTGIH-EDFDITKLRY 494
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIII+TDADVDGAHI TLLLTF YR+ L +G +Y+ PPLYKVE+ K+V Y YDDA
Sbjct: 495 HKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYKVEKNKKVWYAYDDA 554
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA--EANVVF 478
EL + + IQR+KGLGEM QLWETT++PE+R+L ++ ++++A E ++ F
Sbjct: 555 ELNSILEQIGRDNNNKIQRYKGLGEMDAEQLWETTMDPEKRILLRVTMDESATSEIDLTF 614
Query: 479 SSLMGARVDTRKELIQNAANLV-NLD 503
++LMG +V+ R+E I+ A V NLD
Sbjct: 615 TTLMGDKVEPRREFIEENARFVENLD 640
>gi|338214332|ref|YP_004658393.1| DNA gyrase subunit B [Runella slithyformis DSM 19594]
gi|336308159|gb|AEI51261.1| DNA gyrase, B subunit [Runella slithyformis DSM 19594]
Length = 656
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/512 (47%), Positives = 346/512 (67%), Gaps = 19/512 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+YS GKP+ V + S D GT + F PD +FTT+ ++ + T+A RIREL+F
Sbjct: 152 FEQEYSIGKPLYP----VRAIGSADDTGTFVHFLPDDSIFTTS-EYKYETVANRIRELSF 206
Query: 63 LNPKLTIALRKEDSDPEKNQ--YNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
LN +T+ L E Q Y E+ GGL E+V +L++ + L + ++ G+
Sbjct: 207 LNKGITLTLTDLRDLDESGQPRYEEFHSQGGLVEFVTYLDSTRDHLIPTPIYMENEKGVV 266
Query: 121 -IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
+++A+ + + +YS+ ++ Y N+I TI+GGTH+ G + +LTRTL + KS + + I
Sbjct: 267 PVEVAMIYNT-SYSENVVSYVNNINTIEGGTHVSGFRMALTRTLKNYADKSGILAKEKIE 325
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
+SG+ REGLT +ISV+V P+FEGQTKT+LGN +V V Q V E L +L+ +P
Sbjct: 326 ISGDDFREGLTAVISVKVQEPQFEGQTKTKLGNSDVAGAVSQVVSEMLDNFLQENPKEAR 385
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
+I+ K + A KA +AA++AR++V++K+VL + LPGKLADCS T P E+++VEGDSAG
Sbjct: 386 TIVDKVILAAKARIAARKAREMVQRKTVLGGTGLPGKLADCSETDPAGCELYLVEGDSAG 445
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA-- 357
GSAKQGR+R FQAILPLRGKILNVE+ E +Y+NEEI+N+I ALG+ V G+D + A
Sbjct: 446 GSAKQGRNRAFQAILPLRGKILNVEKAQEYKIYENEEIKNMITALGV-VFGKDGDERALN 504
Query: 358 ---LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
LRYHK+II+TDADVDG+HIRTL+LTFF+RY K L D G +Y+ PPLY V++GK+ +
Sbjct: 505 MDKLRYHKVIIMTDADVDGSHIRTLILTFFFRYMKDLIDSGFVYIAQPPLYLVKKGKEER 564
Query: 415 YCYDDAELKKVKSSFPS---NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDA 471
YC+ +A+ ++ +++Y IQR+KGLGEM P QLWETT++P +R LKQ+ IE A
Sbjct: 565 YCWTEAQREQAVMEIAGGKEDSVY-IQRYKGLGEMNPEQLWETTMDPSRRSLKQVSIESA 623
Query: 472 AEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
AEA+ +FS LMG V R+E I+ A +D
Sbjct: 624 AEADHLFSMLMGDEVAPRREFIERNAKYARVD 655
>gi|429124642|ref|ZP_19185174.1| DNA gyrase subunit B [Brachyspira hampsonii 30446]
gi|426279415|gb|EKV56438.1| DNA gyrase subunit B [Brachyspira hampsonii 30446]
Length = 636
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/504 (46%), Positives = 324/504 (64%), Gaps = 13/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q Y RG P V V + GT + F D +F T I +D+ +A R+RELAF
Sbjct: 142 YRQVYHRGVPEEP----VKEVGTSTSNGTTVTFKADADIFETTI-YDYKILANRLRELAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L D + NE+++ GG+E ++ LN +KK LHD + K D +
Sbjct: 197 LNRGIRITL--TDKREAEVVSNEFYYEGGIEMFITHLNENKKALHDKPIYLHKTEDKTDV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ DAY++ + Y N+I T +GGTH+ G + +LTR KK + K I+
Sbjct: 255 EVAMQYV-DAYNENIFTYCNNINTTEGGTHLVGFRTALTRVYTDFAKKLELDKKNKITFM 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGL ++SV++PNP+FEGQTKT+LGN EVR V ++ V E L +Y +P V+ +I
Sbjct: 314 GEDTREGLVAVVSVKIPNPQFEGQTKTKLGNTEVRAVTEKLVVEGLNDYFSQNPKVIKAI 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L K +SA +A AA++ARDL R+K+ L S SLPGKLADCS ++ E+++VEGDSAGG+
Sbjct: 374 LEKIISAAQAREAARKARDLARRKNALESDSLPGKLADCSEQEVDKCEVYLVEGDSAGGT 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILPLRGK+LNVE+ + NE ++ +I ALG GV G F +RY
Sbjct: 434 AKGGRDRHFQAILPLRGKVLNVEKARLDKIIDNESLKPIIAALGCGV-GSSFDISKIRYG 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ-VQYCYDDA 420
++II+ DAD+DG+HIRTLLLTFF+RY + L D G I++ VPPLYK+ K+ Y Y D
Sbjct: 493 RVIIMADADIDGSHIRTLLLTFFFRYMRPLIDLGHIFIAVPPLYKISFDKKNFVYAYSDE 552
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+ K+ S + Y IQR+KGLGEM QLWETT+NPE R++ Q++ EDA +A+ +FS
Sbjct: 553 QRDKILSE-NKDRKYDIQRYKGLGEMNADQLWETTMNPETRLMYQVLTEDAEKADQLFSM 611
Query: 481 LMGARVDTRKELIQNAANLV-NLD 503
LMG V R++ I++ A V NLD
Sbjct: 612 LMGDEVKPRRDFIESNARYVKNLD 635
>gi|357638756|ref|ZP_09136629.1| DNA gyrase, B subunit [Streptococcus urinalis 2285-97]
gi|418416210|ref|ZP_12989409.1| DNA gyrase subunit B [Streptococcus urinalis FB127-CNA-2]
gi|357587210|gb|EHJ56618.1| DNA gyrase, B subunit [Streptococcus urinalis 2285-97]
gi|410874028|gb|EKS21959.1| DNA gyrase subunit B [Streptococcus urinalis FB127-CNA-2]
Length = 650
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 230/508 (45%), Positives = 331/508 (65%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L + D GT + F PD +FT ++D +A RI+ELAF
Sbjct: 150 HYQEYHRGVVVADLQI----IGETDLTGTTVHFTPDDTIFTETTEYDFEKLAKRIQELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L I++ D K Q + + GG+ YV+++N +K + + + +++GIT+
Sbjct: 206 LNRGLRISIT--DKREGKEQERHFHYEGGIASYVEYINENKDVIFENPIYTDGELEGITV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y + ++ +AN+I T +GGTH +G + +LTR +N KK+K +K+ D +LS
Sbjct: 264 EVAMQYTS-GYHENVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENDDNLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ + +L +P V I
Sbjct: 323 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSDAFNRFLLENPQVARKI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS E +E+FIVEGDSAGGS
Sbjct: 383 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 443 AKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVTKSRYQ 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY---- 417
K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G +V+
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEVKAYIQPGN 561
Query: 418 -DDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ ELK + S + S+QR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+
Sbjct: 562 NQEEELKLALEKYSSGRSKPSVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAEAD 621
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+F LMG RV+ R+E I+ A LD
Sbjct: 622 KIFDMLMGDRVEPRREFIEENAVYSTLD 649
>gi|88803546|ref|ZP_01119071.1| DNA gyrase, B subunit [Polaribacter irgensii 23-P]
gi|88780558|gb|EAR11738.1| DNA gyrase, B subunit [Polaribacter irgensii 23-P]
Length = 646
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/511 (44%), Positives = 336/511 (65%), Gaps = 20/511 (3%)
Query: 3 YHQKYSRGK---PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRE 59
+ Q+YS+GK PV T + D GT + F PDK +F +F+++T+A R+RE
Sbjct: 145 WQQEYSKGKALYPVKT-------IGESDFTGTIVTFLPDKSIFKQTTEFNYDTLATRMRE 197
Query: 60 LAFLNPKLTIALR-KEDSDPEKNQYNEYFFAG-GLEEYVQWLNTDKKPL-HDVVGFRKDV 116
L++LN +TI L K +D E N +E F++ GL E++++L++ ++ L ++ +
Sbjct: 198 LSYLNKGITITLTDKRSTDDEGNFISEVFYSDEGLPEFIKYLDSTREQLTSKIISMEGEK 257
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 176
+GI +++A+ + + +Y++ + Y N+I T +GGTH+ G + LT TL +S +K+
Sbjct: 258 NGIPVEVAMVYNT-SYAENLHSYVNNINTHEGGTHLSGFRRGLTGTLKKYADESGLLKNV 316
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
++G+ REGLT IISV+V P+FEGQTKT+LGN EV V QSV E LT YLE +P+
Sbjct: 317 KFEIAGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVSAAVSQSVSEMLTNYLEENPN 376
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
I+ K + A A AA++AR++V++K+V+ LPGKL+DCS T P + EIF+VEGD
Sbjct: 377 DAKIIVQKVILAATARHAARKAREMVQRKTVMSIGGLPGKLSDCSETDPAQCEIFLVEGD 436
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGED---- 352
SAGG+AKQGRDR FQAILPLRGKILNVE+ + +++NEEI+N+ ALG+ + E+
Sbjct: 437 SAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIKNMFTALGVSIGTEEDPRA 496
Query: 353 FKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ 412
+RYHK++I+ DADVDG+HI TL+LTFF+RY + + ++G IY+ PPLY V++G++
Sbjct: 497 LNLSKVRYHKVVIMCDADVDGSHIATLILTFFFRYMREMVEQGYIYIATPPLYLVKKGQK 556
Query: 413 VQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
+Y +DD + + +IQR+KGLGEM QLW+TT+NPE R L+Q+VI+
Sbjct: 557 REYAWDDDQRDFIAQQM--GGTVNIQRYKGLGEMNADQLWDTTMNPEFRTLRQVVIDSPT 614
Query: 473 EANVVFSSLMGARVDTRKELIQNAANLVNLD 503
EA+ VFS LMG V R+E I+ A +D
Sbjct: 615 EADRVFSMLMGDEVPPRREFIEKNAKYAKID 645
>gi|435848705|ref|YP_007310955.1| DNA gyrase subunit B [Natronococcus occultus SP4]
gi|433674973|gb|AGB39165.1| DNA gyrase subunit B [Natronococcus occultus SP4]
Length = 641
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 229/496 (46%), Positives = 328/496 (66%), Gaps = 5/496 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ + G+PV + V ++ + GT IRFWPD +F +F +T++ R+RELAF
Sbjct: 142 FRHAFEAGEPVGDME-RVRDMEPDEDTGTEIRFWPDSDIFE-GDEFSFSTLSSRLRELAF 199
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E + E Y + GG+ E+V++LN + +HD V+ F + I +
Sbjct: 200 LNSGVRITLRDERQETEDAVAETYEYEGGIREFVEYLNETRAVMHDDVIYFEDEEQDIQV 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q D ++ +AN+I T +GGTH+ G K +LTR +N G + D D +L
Sbjct: 260 EVAMQATED-LQGSIHAFANNINTREGGTHLTGFKTALTRVVNDYGNDQGLLGDIDGNLK 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT +ISV+ P+P+FEGQTKT+LGN EVR +V+ ++ E L Y E HPD ++I
Sbjct: 319 GEDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESAMHERLGTYFEEHPDTAEAI 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++ A KA AA++A +L R+KS L S+SLPGKLADC + PEE+E+FI EGDSAGGS
Sbjct: 379 VVKAVEAAKARKAAQKAEELTRRKSALESTSLPGKLADCQTKDPEEAELFIAEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQ R+ FQA+LP++GKILNVE+ + +N+EI+N+I A+G G+ G++F + +RY
Sbjct: 439 AKQARNPEFQAVLPIKGKILNVEKHRLDRILENDEIRNMITAIGAGI-GDEFNIDDVRYK 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KII+ TDADVDGAHIRTLLLTFFYR+ + L + G +Y PPLY+V + DAE
Sbjct: 498 KIIMATDADVDGAHIRTLLLTFFYRHMRPLLEGGYVYATQPPLYRVRYRGETYDAMTDAE 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
++ +QRFKGLGEM P QLWETT+NP+ R+LK++ +EDAA A+ +FS L
Sbjct: 558 RNEIVEEVCDGNPTQVQRFKGLGEMNPEQLWETTMNPDNRILKRITVEDAAAADKMFSVL 617
Query: 482 MGARVDTRKELIQNAA 497
MG V+ RK+ I++ A
Sbjct: 618 MGDAVEPRKQFIKDNA 633
>gi|229917451|ref|YP_002886097.1| DNA gyrase subunit B [Exiguobacterium sp. AT1b]
gi|229468880|gb|ACQ70652.1| DNA gyrase, B subunit [Exiguobacterium sp. AT1b]
Length = 642
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 337/503 (66%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q + RG P L V + D GT +RF+PD +F +++D + +A R+RELAF
Sbjct: 147 YYQSFKRGVPQGELEI----VGTTDTTGTTVRFFPDGDIFQETLEYDFDLLATRLRELAF 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN L I + K+D + E + N Y + GG++ YV+ LN K +H+ V DGI +
Sbjct: 203 LNKGLRI-VAKDDRNDETIERN-YHYEGGIKSYVEHLNRSKASIHEEPVYVHGTKDGIEV 260
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ ++ ++ + + N+I T +GGTH G K +LTR++N K+ +K+ D SLS
Sbjct: 261 EIALQY-NEGFASNIYSFTNNIPTHEGGTHETGFKTALTRSINDYAKRFGLMKEADGSLS 319
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT I+SV+ P P+FEGQTKT+LGN + R D + ++L +P V I
Sbjct: 320 GDDVREGLTAIVSVKHPAPQFEGQTKTKLGNADARTATDTLFSDTFEQFLLENPSVGRLI 379
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A LAAKRAR++ R+K +L SSLPGKLADCSS +SE++IVEGDSAGGS
Sbjct: 380 VDKGLMAARARLAAKRAREMTRRKGILEVSSLPGKLADCSSKDASKSELYIVEGDSAGGS 439
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR FQAILP+RGKI+NVE+ + N+E++ +I ALG G+ ++F RYH
Sbjct: 440 AKSGRDRHFQAILPIRGKIINVEKARLDKILANQEVRTIITALGTGI-ADEFDLSKARYH 498
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K+II+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLY V+ GK+ Y +D E
Sbjct: 499 KLIIMTDADVDGAHIRTLLLTFFYRYMRPLVESGYVYIAQPPLYGVKHGKETIYVQNDRE 558
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+ + P NA YS+QR+KGLGEM P QLW TT+NPE R + ++ ++DA EA+ +F +L
Sbjct: 559 LQAAIAQLPENARYSVQRYKGLGEMDPEQLWNTTMNPETRSMLRVDLQDAIEADEIFETL 618
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG V+ R++ IQ+ A+ V NLD
Sbjct: 619 MGDNVEPRRDFIQSHAHYVKNLD 641
>gi|225386349|ref|ZP_03756113.1| hypothetical protein CLOSTASPAR_00093 [Clostridium asparagiforme
DSM 15981]
gi|225047531|gb|EEG57777.1| hypothetical protein CLOSTASPAR_00093 [Clostridium asparagiforme
DSM 15981]
Length = 638
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 240/505 (47%), Positives = 335/505 (66%), Gaps = 11/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK + L ++ GT +RF PDK++F +FD++T+ R+RE AF
Sbjct: 140 YQQRYERGKVMYPL--KIVGKCEPHEHGTHVRFLPDKEIFEET-EFDYDTLKIRLRETAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
L L I LR D E+ + + + GG+ E+V +LN K PL++ V + + +G+ +
Sbjct: 197 LTKNLKITLR--DDREEEVKEKTFHYEGGIREFVAYLNKGKTPLYEQVIYCEGTREGVYV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+++LQ +D+Y++ + + N+I T +GGTH+ G K +LT+T N +K+K +K+ + SLS
Sbjct: 255 EVSLQH-NDSYTEGIYTFVNNINTPEGGTHLTGFKNALTKTFNDYARKNKLLKENEDSLS 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT IISV++ +P+FEGQTK +LGN E R VD V E LT +LE +P V SI
Sbjct: 314 GEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARTAVDNVVSEQLTYFLEQNPSVAKSI 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
KS+ A +A AA++ARDL R+KS L +LPGKLADCS P EI+IVEGDSAGGS
Sbjct: 374 CEKSILAQRARAAARKARDLTRRKSALDGVALPGKLADCSDKNPVNCEIYIVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK R R QAILPLRGKILNVE+ +Y N EI+ +I A G G+ EDF LRYH
Sbjct: 434 AKTARSRATQAILPLRGKILNVEKARMDRIYGNAEIKAMITAFGTGIH-EDFDITKLRYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TLLLTF YR+ L +G +Y+ PPLYKVE+ K++ Y Y D E
Sbjct: 493 KIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYKVEKNKRIWYAYSDEE 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED--AAEANVVFS 479
L + + + IQR+KGLGEM QLWETT++PE+R+L ++ ++D +E ++ F+
Sbjct: 553 LNSILTDVGRDGNNKIQRYKGLGEMDAEQLWETTMDPERRILLRVTMDDETQSELDLTFT 612
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
+LMG +V+ R+E I+ NA + NLD
Sbjct: 613 TLMGDQVEPRREFIESNAKRVQNLD 637
>gi|218134381|ref|ZP_03463185.1| hypothetical protein BACPEC_02275 [[Bacteroides] pectinophilus ATCC
43243]
gi|217989766|gb|EEC55777.1| DNA gyrase, B subunit [[Bacteroides] pectinophilus ATCC 43243]
Length = 638
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 232/505 (45%), Positives = 340/505 (67%), Gaps = 10/505 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK + LT ++ + GT + F PDK++FT ++++ + R+RE+AF
Sbjct: 139 YEQRYQRGKVMEPLT--IVGECPLEETGTMVHFLPDKEIFTETTVYEYDILKQRLREMAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
L + I LR E E+ + + + GG++E+V++LN K PL++ + + + V + + +
Sbjct: 197 LTKGIKIILRDEREGIEQERV--FHYEGGIKEFVEYLNKSKTPLYEQIIYCEGVKNNVQV 254
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q +D+Y+++ + N+I T +GGTH+ G K +LT+T N + ++ +KD D +L+
Sbjct: 255 EVAMQH-NDSYTESTFTFVNNINTPEGGTHLAGFKNALTKTFNDYARANRILKDSDQNLT 313
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REGLT I+SV++ +P+FEGQTK +LGN E R VD V E LT +LE +P V +I
Sbjct: 314 GDDIREGLTAIVSVKIEDPQFEGQTKQKLGNTEARTAVDSVVSEQLTYFLEQNPAVAKAI 373
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
KSL A +A AA++ARDL R+K+ L S+SLPGKLADC+ PE EI+IVEGDSAGGS
Sbjct: 374 CEKSLLAQRARDAARKARDLTRRKTALESTSLPGKLADCTDKNPENCEIYIVEGDSAGGS 433
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK R R QAILPLRGKILNVE+ + N EI+ +I A G G+ +DF LRYH
Sbjct: 434 AKTARSRATQAILPLRGKILNVEKARLDHVLGNAEIKAMITAFGTGIH-DDFDISKLRYH 492
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TLLLTF YR+ L +G +Y+ PPLYK+E+ K+V Y Y D E
Sbjct: 493 KIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGHVYLAQPPLYKIEKNKKVWYAYSDEE 552
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED--AAEANVVFS 479
L + + + +QR+KGLGEM QLWETT++PE+R+L ++ ++D A+E +V F+
Sbjct: 553 LNNIMTEIGRDQNNKVQRYKGLGEMDAEQLWETTMDPEKRILLRVNMDDDSASELDVTFT 612
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
+LMG +V+ R+E I+ NA + NLD
Sbjct: 613 TLMGDKVEPRREFIETNAKYVKNLD 637
>gi|385798923|ref|YP_005835327.1| DNA gyrase subunit B [Halanaerobium praevalens DSM 2228]
gi|309388287|gb|ADO76167.1| DNA gyrase subunit B [Halanaerobium praevalens DSM 2228]
Length = 640
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/503 (47%), Positives = 338/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y QKY RG P L ++ + GT I F PD +F I FD +A R++ELAF
Sbjct: 145 YKQKYERGIPQHEL--QLIGNCDGNCTGTTIEFKPDPLIFE-EIDFDFKLLAKRLKELAF 201
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN + I + D+ E+ Q ++ F GGL +V++L+ KKPL + + + + +I
Sbjct: 202 LNKGINIKIV--DNRKEEVQQEDFHFDGGLISFVEYLSQSKKPLLSEPIYIEDEAEEGSI 259
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+ + Y+ ++ +AN+I T +GGTH+ G K++ TRT N + +KD D +L
Sbjct: 260 EVAIMY-HQGYNTSLYTFANNINTKEGGTHLSGFKSATTRTFNDYARNKNLLKDGDDNLK 318
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ +REG+ IISV++ P+FEGQTKT+LGN E+R VD +V +L YLE +P V +I
Sbjct: 319 GQDIREGMIAIISVKLSEPQFEGQTKTKLGNSEMRGFVDSAVSSFLKTYLEENPKVGKAI 378
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K++SA A AA++ARDL R+KS L S++LPGKLADCS +++E++IVEGDSAGGS
Sbjct: 379 IEKAISAAHARKAARKARDLTRRKSALTSTALPGKLADCSKRKADDTEVYIVEGDSAGGS 438
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGR+R FQAILPL+GKILNVE+ + N+EI+ LI A+G GV GE+F +RY
Sbjct: 439 AKQGRNREFQAILPLKGKILNVEKSRLNKILNNDEIRALITAIGTGV-GEEFDLTNIRYD 497
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
+III+TDADVDGAHIRTLLLTFFYRY + L + G IY+ PPLYKV++G++ +Y Y+D
Sbjct: 498 RIIIMTDADVDGAHIRTLLLTFFYRYMRPLLENGNIYIAQPPLYKVKKGRREEYVYNDKA 557
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LK++ + + S+QR+KGLGEM P QLW+TT++PE R+L Q+ IEDA A+ FS L
Sbjct: 558 LKELIEEIGKDRV-SMQRYKGLGEMNPSQLWDTTMDPENRILLQVDIEDAIRADETFSIL 616
Query: 482 MGARVDTRKELIQNAANLV-NLD 503
MG +V R+E IQ A V NLD
Sbjct: 617 MGDKVAPRREFIQKHAREVKNLD 639
>gi|317504159|ref|ZP_07962158.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella salivae
DSM 15606]
gi|315664735|gb|EFV04403.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella salivae
DSM 15606]
Length = 656
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/517 (45%), Positives = 338/517 (65%), Gaps = 23/517 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y +GKP+ + V ++GTR +FWPD +FTT + + +A R+RELA+
Sbjct: 146 YQQEYEKGKPLYPVKV----VGETTKRGTRQQFWPDPTIFTTTT-YKWDIVASRMRELAY 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFA-GGLEEYVQWLNTDKKPLHD-VVGFRKDVDGIT 120
LN + I L D E E F A GL+E+V++++ + L D V+ + + GI
Sbjct: 201 LNAGIRITLTDMRHDEEGKIRQEVFHAKDGLKEFVRYVDRHRTHLFDDVIYLKTEKQGIP 260
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK----SKTVKDK 176
I++A+ + +D YS+ + Y N+I TI+GGTH+ G +A+LTRTL + +K ++
Sbjct: 261 IEVAIMYNTD-YSENIHSYVNNINTIEGGTHLTGFRAALTRTLKAYADAEPTIAKQIEKA 319
Query: 177 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236
I ++GE REGLT +IS++V P+FEGQTKT+LGN EV V Q+V E L+ YLE HP
Sbjct: 320 KIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVSGAVQQAVGEALSNYLEEHPI 379
Query: 237 VLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 296
I K + A A +AA++AR+ V++K+V+ LPGKLADCS+ P+E EIF+VEGD
Sbjct: 380 EAKKICEKVVLAATARIAARKARESVQRKNVMTGGGLPGKLADCSNKDPKECEIFLVEGD 439
Query: 297 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGL--GVKGEDFK 354
SAGGSAKQGRDR QAILPLRGKILNVE+ +++ E + N+I+++G+ GV+GED +
Sbjct: 440 SAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAESVMNIIQSIGVRFGVEGEDDR 499
Query: 355 K---EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK 411
+ + LRY KIII+TDADVDG+HI TL++T FYR+ + ++G +Y+ PPLYK K
Sbjct: 500 EANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPKVIEDGHLYIATPPLYKCTYKK 559
Query: 412 QVQYCYDDAEL-----KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQL 466
+YCY + + K V L++ QR+KGLGEM P QLWETT++P+ R+LKQ+
Sbjct: 560 VSEYCYTEQQRQAFIDKYVDGKEDDKGLHT-QRYKGLGEMNPEQLWETTMDPKSRLLKQV 618
Query: 467 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
I++AAEA+ +FS LMG V+ R+E I+ A N+D
Sbjct: 619 TIQNAAEADEIFSMLMGDDVEPRREFIEQNATYANID 655
>gi|383788300|ref|YP_005472868.1| DNA gyrase subunit B [Caldisericum exile AZM16c01]
gi|381363936|dbj|BAL80765.1| DNA gyrase subunit B [Caldisericum exile AZM16c01]
Length = 649
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/504 (47%), Positives = 337/504 (66%), Gaps = 14/504 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y++GKP+ +L + + GT I F PD +F T ++F + I +++ELA+
Sbjct: 156 YEQEYAKGKPLYSLKE--VGNSLFENTGTEITFIPDDTIFET-VEFKEDIIKEKLKELAY 212
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITI 121
LN L I E + E N Y G+ E V+ +N ++ + + + F + D +
Sbjct: 213 LNKGLKIKFINEKTGEE----NIYESKEGIVELVKDINKGEQVIPENPIYFNYEEDHFFL 268
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S +S +L + N+IRT +GGTH G+K +LT+ LN G + K +KD+ +L+
Sbjct: 269 EIAMQYNS-GFSSEILSFVNNIRTTEGGTHELGLKLALTKLLNDEGLQLKMIKDE--ALT 325
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
+ V+EGLT II+V++ P+FEGQTKT+LGN EV+ V V+ LT Y + H D L I
Sbjct: 326 FDDVKEGLTAIINVKMLEPQFEGQTKTKLGNAEVKNKVYNIVKTQLTLYFDKHVDELQKI 385
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLR-SSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
L K L A A +AAK+A++LVR+K L S LPGKLADCS P ++E++IVEG+SAGG
Sbjct: 386 LKKVLLAQSARIAAKKAKELVRRKGALDFSGRLPGKLADCSLNDPAQTELYIVEGESAGG 445
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQ RDR+FQA+LPLRGKILNVE+ + A +EEI+NLI +LG GV GEDF++E LRY
Sbjct: 446 SAKQARDRKFQAVLPLRGKILNVEKVNMAHALSSEEIKNLITSLGCGV-GEDFREEHLRY 504
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIII+TDADVDGAHIRTLLLTFF+RY + L ++G +Y+ PPLY+V K V+Y Y D
Sbjct: 505 HKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIEKGYLYIAQPPLYRVSYDKDVRYAYSDE 564
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
ELK V +QR+KGLGEM P QLWETT++P +R++K++ IE+A +A+ +F
Sbjct: 565 ELKHVMEHIKDPNKAEVQRYKGLGEMDPQQLWETTMDPTRRIIKRVTIEEAEQADKLFEL 624
Query: 481 LMGARVDTRKELIQN-AANLVNLD 503
LMG+ V RKE I N A +VNLD
Sbjct: 625 LMGSEVQPRKEFIMNHAKEVVNLD 648
>gi|78188013|ref|YP_378351.1| DNA gyrase subunit B [Chlorobium chlorochromatii CaD3]
gi|78170212|gb|ABB27308.1| DNA gyrase subunit B [Chlorobium chlorochromatii CaD3]
Length = 637
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 238/507 (46%), Positives = 333/507 (65%), Gaps = 24/507 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+Q+Y RG P V + D++GT+ F PD +F T +F I R+RELAF
Sbjct: 141 YYQRYERGVP----QGDVKVIGDSDQRGTKTTFMPDGTIFKTT-EFRKEIIIDRMRELAF 195
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQW-----LNTDKKPLHDVVGFRKDVD 117
LN L I ++ + + E E+ F GG+ E+V++ LN ++P++ + G R D
Sbjct: 196 LNKNLRIIVQDTNGEQE-----EFHFEGGICEFVRFTDQNRLNLLREPIY-LYGER---D 246
Query: 118 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
G +++ALQ+ +D+Y + + Y N+I T +GGTH+ G + +LTRTLNS +K+ +K+
Sbjct: 247 GTVVEIALQY-NDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNSYAQKNDLLKNLK 305
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
++L+G+ +EGLT +ISV+V P+FEGQTKT+LGN E + +V+ V + L E+ E +P+
Sbjct: 306 LTLTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVETVVNDQLAEFAESNPNT 365
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
L I+ K A + AA++A++L R+KSVL SS LPGKLADCS PE E++IVEGDS
Sbjct: 366 LKLIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSINDPEHCELYIVEGDS 425
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDR FQAILPL+GKILNVE+ M +NEEI+ +I ALG E+F E
Sbjct: 426 AGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILALGTSFGDEEFAVEK 485
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRY KIII+TDADVDGAHIRTLLLTFF+R+ + + + G +Y+ PPLY V+ GK Y +
Sbjct: 486 LRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRPVIEAGRVYIAQPPLYLVKSGKDQHYAW 545
Query: 418 DDAE----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
DD E + +K S A IQR+KGLGEM P QLW TT++P R L + +E+A E
Sbjct: 546 DDDERNSIVDNMKKMQKSKANIHIQRYKGLGEMNPEQLWSTTMDPAHRSLLLVSVENAME 605
Query: 474 ANVVFSSLMGARVDTRKELIQNAANLV 500
A+ VFS+LMG +V+ R+E I+ A V
Sbjct: 606 ADQVFSTLMGDKVEPRREFIEKNARYV 632
>gi|160941457|ref|ZP_02088792.1| hypothetical protein CLOBOL_06348 [Clostridium bolteae ATCC
BAA-613]
gi|158435603|gb|EDP13370.1| hypothetical protein CLOBOL_06348 [Clostridium bolteae ATCC
BAA-613]
Length = 637
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 238/505 (47%), Positives = 337/505 (66%), Gaps = 12/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGK T ++ ++ GTR+ F PDK++F + +D++T+ R+RE AF
Sbjct: 140 YQQRYERGK--VTYPLKIVGKCGPEQHGTRVTFLPDKEIFEETV-YDYDTLKIRLRETAF 196
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-DGITI 121
L L I L K+D D +K + + + GG++E+V +LN K P++D V + + +G+ +
Sbjct: 197 LTKNLKIIL-KDDRDEKKEKV--FHYEGGIKEFVTYLNKGKTPIYDQVIYCEGTREGVYV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++++Q +D+Y++ + + N+I T +GGTH+ G K +LT+T N ++ K +KD + +LS
Sbjct: 254 EVSMQH-NDSYTENIYTFVNNINTPEGGTHLTGFKNALTKTFNDYAREKKLLKDSEDNLS 312
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE +REGLT IISV++ +P+FEGQTK +LGN E R VD V E LT +LE +P V S+
Sbjct: 313 GEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARAAVDNIVSEQLTYFLEQNPAVAKSM 372
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
KS+ A +A AA++ARDL R+KS L +LPGKLADCS PE EI+IVEGDSAGGS
Sbjct: 373 CEKSILAQRARAAARKARDLTRRKSALDGMALPGKLADCSDKNPENCEIYIVEGDSAGGS 432
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK R R QAILPLRGKILNVE+ +Y N EI+ +I A G G+ +DF LRYH
Sbjct: 433 AKTARSRATQAILPLRGKILNVEKARMDRIYGNAEIKAMITAFGTGIH-DDFDISKLRYH 491
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHI TLLLTF YR+ L +G +Y+ PPLYKVE+ K+V Y Y D E
Sbjct: 492 KIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYKVEKNKKVWYAYSDDE 551
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVI--EDAAEANVVFS 479
L + + IQR+KGLGEM QLWETT++PE+R+L ++ + E +E ++ F+
Sbjct: 552 LNSILKEIGRDNSNKIQRYKGLGEMDAEQLWETTMDPERRILLRVTMDEETTSEVDLTFT 611
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
+LMG +V+ R+E I+ NA + NLD
Sbjct: 612 TLMGDQVEPRREFIEANAKKVKNLD 636
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,660,843,906
Number of Sequences: 23463169
Number of extensions: 319990601
Number of successful extensions: 891559
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 16986
Number of HSP's successfully gapped in prelim test: 923
Number of HSP's that attempted gapping in prelim test: 811699
Number of HSP's gapped (non-prelim): 21226
length of query: 507
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 360
effective length of database: 8,910,109,524
effective search space: 3207639428640
effective search space used: 3207639428640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)