BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010553
(507 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5YLB4|GYRB_NICBE DNA gyrase subunit B, chloroplastic/mitochondrial OS=Nicotiana
benthamiana GN=GYRB PE=2 SV=1
Length = 731
Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/506 (87%), Positives = 482/506 (95%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY QKYSRGKP+TTL CH LPV+ +DRQGT IRFWPDK+VFTT +QFD+NTIAGRIRELA
Sbjct: 226 EYQQKYSRGKPITTLICHDLPVEMRDRQGTAIRFWPDKEVFTTEMQFDYNTIAGRIRELA 285
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLNP+LTIAL+KED DPEK Q NEYF+AGGL EYV+WLN DKKPLHDV+GFRK+ DGITI
Sbjct: 286 FLNPELTIALKKEDIDPEKIQCNEYFYAGGLVEYVKWLNADKKPLHDVLGFRKEADGITI 345
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D+ALQWCSDAYSDTMLGYANSIRTIDGGTHI+GVKA+LTR LN+LGKKSKT+K+KDISLS
Sbjct: 346 DMALQWCSDAYSDTMLGYANSIRTIDGGTHIDGVKAALTRILNNLGKKSKTIKEKDISLS 405
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GEHVREGLTC+ISV+VPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI
Sbjct: 406 GEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 465
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
LSKSL+ALKAALAAKRAR+LVRQKSVL+SSSLPGKLADCS+T PEE+EIFIVEGDSAGGS
Sbjct: 466 LSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSATNPEEAEIFIVEGDSAGGS 525
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKEALRYH
Sbjct: 526 AKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYH 585
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIIILTDADVDGAHIRTLLLTFF+RYQ+ LF+EGCIYVGVPPLYKVERGKQV YCYDDAE
Sbjct: 586 KIIILTDADVDGAHIRTLLLTFFFRYQRALFEEGCIYVGVPPLYKVERGKQVYYCYDDAE 645
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LKKV+ SFPSNA Y+IQRFKGLGEMMP QLWETT+NPE R+LKQLV+EDAAEANVVFSSL
Sbjct: 646 LKKVQRSFPSNASYNIQRFKGLGEMMPAQLWETTMNPETRLLKQLVVEDAAEANVVFSSL 705
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG+RVD RK+LIQN+A+++NL+ LDI
Sbjct: 706 MGSRVDIRKQLIQNSASMMNLEQLDI 731
>sp|Q9SS38|GYRBP_ARATH DNA gyrase subunit B, chloroplastic OS=Arabidopsis thaliana
GN=GYRBC PE=2 SV=3
Length = 730
Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/507 (84%), Positives = 472/507 (93%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
ME+ QKYSRGKPVTTLTCHVLP +S+ QGT IRFWPDK+VFTTAIQFDHNTIAGRIREL
Sbjct: 224 MEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEVFTTAIQFDHNTIAGRIREL 283
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
AFLNPK+TI+L+KED DPE++ Y+EYF+AGGL EYV WLNTDKKPLHDV+GFRK+++G T
Sbjct: 284 AFLNPKVTISLKKEDDDPERDVYSEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEINGST 343
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+D++LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSL KK K +K+KDISL
Sbjct: 344 VDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISL 403
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGEHVREGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTEYLELHPDVL+S
Sbjct: 404 SGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLES 463
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+SKSL+A KAALAAKRAR+LVR KSVL+SSSLPGKLADCSST P ESEIFIVEGDSAGG
Sbjct: 464 IISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGG 523
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDF KE LRY
Sbjct: 524 SAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRY 583
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIIILTDADVDGAHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KVERGKQ YCYDDA
Sbjct: 584 HKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDA 643
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
LKK+ +SFP NA Y+IQRFKGLGEMMP QLWETT+NP+ R+LKQLV++DAAE N+VFSS
Sbjct: 644 ALKKITASFPGNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVVDDAAETNMVFSS 703
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMGARVD RKELI++AA +NL++LDI
Sbjct: 704 LMGARVDVRKELIKSAATRMNLENLDI 730
>sp|Q94BZ7|GYRBM_ARATH DNA gyrase subunit B, mitochondrial OS=Arabidopsis thaliana
GN=GYRBM PE=2 SV=1
Length = 732
Score = 870 bits (2247), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/507 (83%), Positives = 471/507 (92%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
ME+ Q YSRGKP+TTLTC VLP++SK +GT IRFWPDK+VFTTAI+FDHNTIAGRIREL
Sbjct: 226 MEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIREL 285
Query: 61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
AFLNPK+TI+L+KED DPEK QY+EY FAGGL EYV WLNTDK P+HDV+GFR++++G T
Sbjct: 286 AFLNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLGFRREINGAT 345
Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
+D+ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN+L KKSKTVK+KDISL
Sbjct: 346 VDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISL 405
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
SGEHVREGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTE+LELHPD+L+S
Sbjct: 406 SGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILES 465
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+SKSL+A KAALAAKRAR+LVR KSVL+SSSLPGKLADCSST PE SEIFIVEGDSAGG
Sbjct: 466 IISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGG 525
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKE LRY
Sbjct: 526 SAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRY 585
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
HKIIILTDADVDGAHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KVERGK QYCYDDA
Sbjct: 586 HKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDA 645
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
+LKK+ S+FP+NA Y+IQRFKGLGEMMP QLWETT+NPE R+LKQLV++D AEAN+ FSS
Sbjct: 646 DLKKITSNFPANASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSS 705
Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
LMGARVD RKELI+NAA +NL LDI
Sbjct: 706 LMGARVDVRKELIKNAATRINLQRLDI 732
>sp|Q5NBJ3|GYRB_ORYSJ DNA gyrase subunit B, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=GYRB PE=2 SV=1
Length = 729
Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/506 (80%), Positives = 463/506 (91%), Gaps = 1/506 (0%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
EY Q YSRGK +T LT L +S RQGTRIRFWPDK +FTT + FD NTIAGRIRELA
Sbjct: 225 EYRQNYSRGKAITMLTSRTLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELA 284
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FLNP+LTIAL KE+ D + Q+NEY +AGGL EYV+WLNTDKK LHD + FRK++DGIT+
Sbjct: 285 FLNPELTIALTKEEDDLQV-QHNEYCYAGGLVEYVKWLNTDKKSLHDPIAFRKEMDGITV 343
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D++LQWCSD+YSDT+LGYANSIRTIDGGTHI+G+K SLTRT+N+ KKSKT+KDKDISLS
Sbjct: 344 DVSLQWCSDSYSDTVLGYANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLS 403
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GEHVREG+TCII+V+VPNPEFEGQTKTRLGNPEVR++V+QSVQE LTEYLELHPDVLDSI
Sbjct: 404 GEHVREGMTCIIAVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSI 463
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
LSKSL+ALKAALAAKRAR+LVR KSVL+SSSLPGKLADC+S+ PEESEIFIVEGDSAGGS
Sbjct: 464 LSKSLNALKAALAAKRARELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGS 523
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR+FQAILPLRGKILN+ER+DEAA+YKNEEIQNLI ALGLGVKGEDF KEALRYH
Sbjct: 524 AKQGRDRKFQAILPLRGKILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYH 583
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+ILTDADVDGAHIRTLLLTFF+RYQK LFDEGCIYVGVPPLYKVERGKQ YCYDDA+
Sbjct: 584 KIVILTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDAD 643
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
LK++ ++FP+NA Y IQRFKGLGEMMP QLWETT++PE+RMLKQL +EDAAEANVVFSSL
Sbjct: 644 LKELVNTFPTNASYHIQRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSL 703
Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
MG RVD RK+LIQNAA++VNL+HLDI
Sbjct: 704 MGTRVDVRKQLIQNAASMVNLEHLDI 729
>sp|O50627|GYRB_BACHD DNA gyrase subunit B OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=gyrB PE=3
SV=1
Length = 637
Score = 498 bits (1282), Expect = e-140, Method: Compositional matrix adjust.
Identities = 251/503 (49%), Positives = 342/503 (67%), Gaps = 11/503 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QK+ RG P L + + DR GT+I F PD +FT F+++T+A R+RELAF
Sbjct: 143 HYQKFHRGVPAADLEV----IGTTDRTGTKIHFKPDGDIFTETTVFEYDTLASRLRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITI 121
LN L I + E+ + +E+ + GG+ +V+ LN ++ LH+ + + G+ +
Sbjct: 199 LNKGLRIKITDMR---EEEKSDEFHYEGGIASFVEHLNRTRETLHETPIHIEGEKQGVYV 255
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ +D ++ + +AN+I T +GGTH G K LTR +N +K K+ D +L+
Sbjct: 256 EIAVQY-NDGFTSNIYSFANNINTHEGGTHESGFKTGLTRVINDYARKHNLFKESDPNLT 314
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT IISV++P+P+FEGQTKT+LGN E R + D E+ + +L HP V +
Sbjct: 315 GEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSLFTEHFSRFLIEHPQVARKL 374
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A AAK+AR+L R+KS L SSLPGKLADCSS SEI+IVEGDSAGGS
Sbjct: 375 VDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCSSRDASISEIYIVEGDSAGGS 434
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N EI+ +I ALG G+ G+DF E RYH
Sbjct: 435 AKQGRDRHFQAILPLRGKILNVEKARLDKILANNEIRAIITALGTGI-GDDFDIEKARYH 493
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+TDADVDGAHIRTL+LTFFYRY + L + G +Y+ PPLYKV++GK +QY Y DAE
Sbjct: 494 KIIIMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQPPLYKVQQGKDIQYAYGDAE 553
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ S P A IQR+KGLGEM P QLWETT++P QR + Q+ +EDA +A+ +F L
Sbjct: 554 LQEILSQLPDKAKPGIQRYKGLGEMNPSQLWETTMDPGQRTVLQVTLEDAMKADEIFEIL 613
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG RV+ R++ IQ NA + NLD
Sbjct: 614 MGDRVEPRRDFIQENARYVKNLD 636
>sp|P77993|GYRB_THEMA DNA gyrase subunit B OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=gyrB PE=3 SV=2
Length = 636
Score = 482 bits (1240), Expect = e-135, Method: Compositional matrix adjust.
Identities = 248/513 (48%), Positives = 355/513 (69%), Gaps = 23/513 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y Q+Y RGKPVT + + D+ GT +RF PD +F+ +FD + + R+RE+AF
Sbjct: 139 YRQRYERGKPVTPVEV----IGETDKHGTIVRFKPDPLIFSET-EFDPDILEHRLREIAF 193
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-------- 114
L P L I E D + + F GG+ EYV++LN KK LHDV+ ++
Sbjct: 194 LVPGLKI----EFEDRINGEKKTFKFDGGIVEYVKYLNRGKKALHDVIHIKRTEKVKTKN 249
Query: 115 DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK 174
D + +++A Q+ +D+YS+ ++ +AN+I+T+DGGTH+ K++LTR +N GKK +K
Sbjct: 250 GEDEVIVEIAFQY-TDSYSEDIVSFANTIKTVDGGTHVTAFKSTLTRLMNEYGKKHNFLK 308
Query: 175 DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELH 234
KD S GE VREGLT +ISV V NPEFEGQTK++LGN EV++ V ++++E L + + +
Sbjct: 309 -KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAMREELKKIFDAN 367
Query: 235 PDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVE 294
P+++ +ILSK +S +A AAKRAR++VR+K+VL++++LPGKLADCSST E++E+FIVE
Sbjct: 368 PELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLADCSSTHREKTELFIVE 427
Query: 295 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 354
GDSAGGSAKQ RDR FQA+LP+RGKILNVE+ + KNE+I ++I A+G G+ G+DF
Sbjct: 428 GDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVAVGTGI-GDDFD 486
Query: 355 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY +III+TDAD+DGAHIRTLLLT FYRY + L ++G +Y+ +PPLY+++ G++
Sbjct: 487 ESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPPLYRIKAGREEF 546
Query: 415 YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
Y Y D EL + K + IQR+KGLGEM P QLWETT+NPE R + ++ IEDA EA
Sbjct: 547 YVYSDQELAEYKEKLQGKRI-EIQRYKGLGEMNPEQLWETTMNPETRKIIRVTIEDAEEA 605
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
+ +F LMG +R+E I+ A + + LDI
Sbjct: 606 DRLFEILMGNDPSSRREFIERHA--LKVKELDI 636
>sp|Q8CQK4|GYRB_STAES DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC
12228) GN=gyrB PE=3 SV=1
Length = 643
Score = 481 bits (1237), Expect = e-135, Method: Compositional matrix adjust.
Identities = 250/502 (49%), Positives = 335/502 (66%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + D+ GT IRF DK++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L+ E + + Y + GG++ YV LN +K+PLHD + + D I +
Sbjct: 205 LNKGIQITLKDEREEEVRED--SYHYEGGIKSYVDLLNENKEPLHDEPIYIHQSKDDIEV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LS
Sbjct: 263 EIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLS 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I
Sbjct: 322 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRII 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 382 VEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 442 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 501 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K + +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F L
Sbjct: 561 LDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEML 620
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 621 MGDVVENRRQFIEDNAVYANLD 642
>sp|Q5HK03|GYRB_STAEQ DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=gyrB PE=3 SV=1
Length = 643
Score = 481 bits (1237), Expect = e-135, Method: Compositional matrix adjust.
Identities = 250/502 (49%), Positives = 335/502 (66%), Gaps = 9/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L + D+ GT IRF DK++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I L+ E + + Y + GG++ YV LN +K+PLHD + + D I +
Sbjct: 205 LNKGIQITLKDEREEEVRED--SYHYEGGIKSYVDLLNENKEPLHDEPIYIHQSKDDIEV 262
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LS
Sbjct: 263 EIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLS 321
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I
Sbjct: 322 GEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRII 381
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS
Sbjct: 382 VEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGS 441
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYH
Sbjct: 442 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYH 500
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D E
Sbjct: 501 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 560
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+K + +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F L
Sbjct: 561 LDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEML 620
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 621 MGDVVENRRQFIEDNAVYANLD 642
>sp|Q5HJZ1|GYRB_STAAC DNA gyrase subunit B OS=Staphylococcus aureus (strain COL) GN=gyrB
PE=3 SV=3
Length = 644
Score = 475 bits (1222), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 339/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>sp|P66937|GYRB_STAAN DNA gyrase subunit B OS=Staphylococcus aureus (strain N315) GN=gyrB
PE=1 SV=2
Length = 644
Score = 474 bits (1221), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 339/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>sp|P66936|GYRB_STAAM DNA gyrase subunit B OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=gyrB PE=1 SV=2
Length = 644
Score = 474 bits (1221), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 339/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>sp|P0A0K7|GYRB_STAAW DNA gyrase subunit B OS=Staphylococcus aureus (strain MW2) GN=gyrB
PE=3 SV=2
Length = 644
Score = 474 bits (1221), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 339/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>sp|P0A0K8|GYRB_STAAU DNA gyrase subunit B OS=Staphylococcus aureus GN=gyrB PE=1 SV=2
Length = 644
Score = 474 bits (1221), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 339/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>sp|Q6GD85|GYRB_STAAS DNA gyrase subunit B OS=Staphylococcus aureus (strain MSSA476)
GN=gyrB PE=3 SV=3
Length = 644
Score = 474 bits (1221), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 339/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>sp|Q2FKQ1|GYRB_STAA3 DNA gyrase subunit B OS=Staphylococcus aureus (strain USA300)
GN=gyrB PE=3 SV=3
Length = 644
Score = 474 bits (1221), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 339/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>sp|Q6GKU0|GYRB_STAAR DNA gyrase subunit B OS=Staphylococcus aureus (strain MRSA252)
GN=gyrB PE=3 SV=3
Length = 644
Score = 474 bits (1219), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 338/502 (67%), Gaps = 8/502 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
YHQ Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAF
Sbjct: 149 YHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAF 204
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +
Sbjct: 205 LNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K+ LS
Sbjct: 264 EIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEDKDRLS 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++
Sbjct: 323 GEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTV 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS
Sbjct: 383 VEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
K GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYH
Sbjct: 443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYH 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D E
Sbjct: 502 KIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 561
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L K+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F L
Sbjct: 562 LDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEML 621
Query: 482 MGARVDTRKELIQNAANLVNLD 503
MG V+ R++ I++ A NLD
Sbjct: 622 MGDVVENRRQFIEDNAVYANLD 643
>sp|Q9X3Y6|GYRB_BACAN DNA gyrase subunit B OS=Bacillus anthracis GN=gyrB PE=3 SV=2
Length = 640
Score = 474 bits (1219), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/505 (49%), Positives = 345/505 (68%), Gaps = 15/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++QKY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAF
Sbjct: 146 HYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAF 201
Query: 63 LNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGI 119
LN KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI
Sbjct: 202 LNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 256
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +
Sbjct: 257 QVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSN 315
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V
Sbjct: 316 LTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVAR 375
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAG
Sbjct: 376 KIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAG 435
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E R
Sbjct: 436 GSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKAR 494
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++
Sbjct: 495 YHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNE 554
Query: 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F
Sbjct: 555 KELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 614
Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
LMG +V+ R+ IQ NA + NLD
Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLD 639
>sp|P05652|GYRB_BACSU DNA gyrase subunit B OS=Bacillus subtilis (strain 168) GN=gyrB PE=3
SV=1
Length = 638
Score = 473 bits (1217), Expect = e-132, Method: Compositional matrix adjust.
Identities = 242/503 (48%), Positives = 340/503 (67%), Gaps = 10/503 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RG PVT L + D GT F PD ++F+ ++D++ +A R+RELAF
Sbjct: 143 HRQTYKRGVPVTDLEI----IGETDHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELAF 198
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
L + I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+
Sbjct: 199 LTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +N +K +K+ D +LS
Sbjct: 257 EVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLS 315
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
G+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D + ++ +PD I
Sbjct: 316 GDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKI 375
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGS
Sbjct: 376 VDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGS 435
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AKQGRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYH
Sbjct: 436 AKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYH 494
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D E
Sbjct: 495 KVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKE 554
Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
L+++ + P +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F L
Sbjct: 555 LEELLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEML 614
Query: 482 MGARVDTRKELIQ-NAANLVNLD 503
MG +V+ R+ I+ NA + NLD
Sbjct: 615 MGDKVEPRRNFIEANARYVKNLD 637
>sp|P94604|GYRB_CLOAB DNA gyrase subunit B OS=Clostridium acetobutylicum (strain ATCC 824
/ DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gyrB
PE=3 SV=2
Length = 637
Score = 472 bits (1214), Expect = e-132, Method: Compositional matrix adjust.
Identities = 248/506 (49%), Positives = 345/506 (68%), Gaps = 17/506 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y RGK + + D GT+I F PD ++F ++D++T++ R+RELAF
Sbjct: 143 WKQTYHRGKVASPFE----KIGDSDEHGTKIYFKPDPEIFEDT-EYDYDTLSQRLRELAF 197
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPL-HDVVGFRKDVD-GI 119
LN + I L E D NE F + GGL+ +V +LN +K+ + + + +D
Sbjct: 198 LNKGIKIELTDERHDK-----NEIFHYEGGLKSFVSYLNRNKEVVFKEPIYVEGSIDSNY 252
Query: 120 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 179
++++ALQ+ +D Y++ + +AN+I TI+GGTH+ G K +LTR +N KK +K+ D +
Sbjct: 253 SVEIALQY-NDGYNENIFSFANNIHTIEGGTHLAGFKTALTRVINDYAKKFGYLKENDKN 311
Query: 180 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
LSGE +REGLT ++SV++ P+FEGQTKT+LGN EVR +VD + E ++ YLE +P +
Sbjct: 312 LSGEDIREGLTAVVSVKLTEPQFEGQTKTKLGNTEVRGIVDSIISERVSTYLEENPQIGK 371
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 299
++ K+L A +A AAK+AR++ R+KSVL S+SLPGKLADCSS EE EI+IVEGDSAG
Sbjct: 372 LVIDKALVASRAREAAKKAREITRRKSVLESTSLPGKLADCSSKDAEECEIYIVEGDSAG 431
Query: 300 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 359
GSAKQGR+RRFQAILPLRGKI+NVE++ + +EEI+ + A G G+ G+DF LR
Sbjct: 432 GSAKQGRNRRFQAILPLRGKIMNVEKQRIDKILNSEEIKAMATAFGGGI-GKDFDVSKLR 490
Query: 360 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419
YHKIII+TDADVDGAHIRTL+LTFFYRY L EG +++ PPLYKV + ++ Y Y D
Sbjct: 491 YHKIIIMTDADVDGAHIRTLILTFFYRYMTELISEGHVFIAQPPLYKVTKTRKEYYAYSD 550
Query: 420 AELKKVKSSFPS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
EL+ V + IQR+KGLGEM P QLWETT+NPEQR L ++ IEDA A+ +F
Sbjct: 551 KELEDVLQDVGGKDKNTDIQRYKGLGEMNPEQLWETTMNPEQRTLIKVNIEDAMAADEIF 610
Query: 479 SSLMGARVDTRKELI-QNAANLVNLD 503
+ LMG +VD R++ I +NA +VNLD
Sbjct: 611 TILMGDKVDPRRKFIEENATKVVNLD 636
>sp|O29720|GYRB_ARCFU DNA gyrase subunit B OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=gyrB PE=3
SV=2
Length = 632
Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust.
Identities = 231/502 (46%), Positives = 334/502 (66%), Gaps = 15/502 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y+QKY RG + GT +RF PD+++F T +F + +A R++ELA+
Sbjct: 144 YYQKYQRGSRSPEAGHRTEVLGETKEHGTTVRFKPDREIFETT-EFKYEIVAQRLKELAY 202
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 122
LN L I L E E+ + F G+ V+ LN ++KPLH+ + DG++++
Sbjct: 203 LNRGLKIILFDEREGKEET----FHFEDGIIGLVRSLNRNRKPLHEPIYIETTKDGVSVE 258
Query: 123 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 182
+A+Q+ +D+ + + +AN+I T +GG+H+ G +A LTR +N GKK K ++G
Sbjct: 259 VAIQF-TDSDVENIQAFANNINTSEGGSHVVGFRAGLTRAVNEYGKKHL---KKFEPVTG 314
Query: 183 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 242
+REGLT +ISV+VP P+FEGQTKT+L N +V+ VV+ +V + +LE +P +++L
Sbjct: 315 VDIREGLTAVISVKVPEPQFEGQTKTKLTNSDVKTVVESAVYSGVLRWLEENPAQAETLL 374
Query: 243 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 302
+K + KA AAKRA++LV++K+ L ++LPGKLADCSS PEE E+FIVEG+SAGGSA
Sbjct: 375 NKFILNKKAREAAKRAKELVKRKNEL-ITTLPGKLADCSSKNPEERELFIVEGESAGGSA 433
Query: 303 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 362
KQ RDRRFQAILP++GKI+NVE+ A + KN+EI+ +I A+G G+ G+DF RY +
Sbjct: 434 KQARDRRFQAILPIKGKIINVEKAGMARVLKNDEIKAIISAIGAGI-GKDFDITKARYRR 492
Query: 363 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 422
III+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLY++++GK+ Y Y D EL
Sbjct: 493 IIIMTDADVDGAHIRTLLLTFFYRYMRPLIESGYLYIAQPPLYQIKKGKKSYYAYSDEEL 552
Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
K+ +QR+KGLGEM P QLWETT+NPE R+L Q+ +EDA A+ +FS LM
Sbjct: 553 KRTLEQVGGG---EVQRYKGLGEMNPQQLWETTMNPENRILIQVTLEDAKRADELFSILM 609
Query: 483 GARVDTRKELIQ-NAANLVNLD 503
G V++R+ I ++ + NLD
Sbjct: 610 GEDVESRRNFIMAHSKEVKNLD 631
>sp|Q9A0L0|GYRB_STRP1 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M1 GN=gyrB
PE=3 SV=1
Length = 650
Score = 430 bits (1105), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/508 (44%), Positives = 339/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q++ RG V L + + D GT + F PD ++FT QFD++ +A RI+ELAF
Sbjct: 150 HYQEFKRGAVVADLEV----IGTTDVTGTTVHFTPDPEIFTETTQFDYSVLAKRIQELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + S E+ ++ + + GG+ YV++LN K + + + +++GI +
Sbjct: 206 LNRGLKISITDKRSGMEQEEH--FLYEGGIGSYVEFLNDKKDVIFETPIYTDGELEGIAV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR +N KK+K +K+ + +L+
Sbjct: 264 EVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKNKILKENEDNLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V I
Sbjct: 323 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGS
Sbjct: 383 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 443 AKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCY--- 417
K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGI 561
Query: 418 -DDAELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ +LK + + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+
Sbjct: 562 DQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEAD 621
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
VF LMG RV+ R++ I+ A LD
Sbjct: 622 KVFDMLMGDRVEPRRDFIEENAVYSTLD 649
>sp|Q8P1M4|GYRB_STRP8 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=gyrB PE=3 SV=1
Length = 650
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/508 (44%), Positives = 339/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q++ RG V L + + D GT + F PD ++FT QFD++ +A RI+ELAF
Sbjct: 150 HYQEFKRGAVVADLEI----IGTTDVTGTTVHFTPDPEIFTETTQFDYSVLAKRIQELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + S E+ ++ + + GG+ YV++LN K + + + +++GI +
Sbjct: 206 LNRGLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKKDVIFETPIYTDGELEGIAV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR +N KK+K +K+ + +L+
Sbjct: 264 EVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKNKILKENEDNLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V I
Sbjct: 323 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGS
Sbjct: 383 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 443 AKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCY--- 417
K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGI 561
Query: 418 -DDAELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ +LK + + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+
Sbjct: 562 DQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEAD 621
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
VF LMG RV+ R++ I+ A LD
Sbjct: 622 KVFDMLMGDRVEPRRDFIEENAVYSTLD 649
>sp|Q5XD05|GYRB_STRP6 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=gyrB PE=3 SV=1
Length = 650
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/508 (44%), Positives = 339/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q++ RG V L + + D GT + F PD ++FT QFD++ +A RI+ELAF
Sbjct: 150 HYQEFKRGAVVADLEI----IGTTDVTGTTVHFTPDPEIFTETTQFDYSVLAKRIQELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + S E+ ++ + + GG+ YV++LN K + + + +++GI +
Sbjct: 206 LNRGLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKKDVIFETPIYTDGELEGIAV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR +N KK+K +K+ + +L+
Sbjct: 264 EVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKNKILKENEDNLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V I
Sbjct: 323 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGS
Sbjct: 383 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 443 AKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCY--- 417
K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGI 561
Query: 418 -DDAELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ +LK + + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+
Sbjct: 562 DQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEAD 621
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
VF LMG RV+ R++ I+ A LD
Sbjct: 622 KVFDMLMGDRVEPRRDFIEENAVYSTLD 649
>sp|P0DG05|GYRB_STRPQ DNA gyrase subunit B OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=gyrB PE=3 SV=1
Length = 650
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/508 (44%), Positives = 339/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q++ RG V L + + D GT + F PD ++FT QFD++ +A RI+ELAF
Sbjct: 150 HYQEFKRGAVVADLEV----IGTTDVTGTTVHFTPDPEIFTETTQFDYSVLAKRIQELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + S E+ ++ + + GG+ YV++LN K + + + +++GI +
Sbjct: 206 LNRGLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKKDVIFETPIYTDGELEGIAV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR +N KK+K +K+ + +L+
Sbjct: 264 EVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKNKILKENEDNLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V I
Sbjct: 323 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGS
Sbjct: 383 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 443 AKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCY--- 417
K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGI 561
Query: 418 -DDAELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ +LK + + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+
Sbjct: 562 DQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEAD 621
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
VF LMG RV+ R++ I+ A LD
Sbjct: 622 KVFDMLMGDRVEPRRDFIEENAVYSTLD 649
>sp|P0DG04|GYRB_STRP3 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=gyrB PE=3 SV=1
Length = 650
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/508 (44%), Positives = 339/508 (66%), Gaps = 15/508 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q++ RG V L + + D GT + F PD ++FT QFD++ +A RI+ELAF
Sbjct: 150 HYQEFKRGAVVADLEV----IGTTDVTGTTVHFTPDPEIFTETTQFDYSVLAKRIQELAF 205
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + S E+ ++ + + GG+ YV++LN K + + + +++GI +
Sbjct: 206 LNRGLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKKDVIFETPIYTDGELEGIAV 263
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR +N KK+K +K+ + +L+
Sbjct: 264 EVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKNKILKENEDNLT 322
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V I
Sbjct: 323 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKI 382
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGS
Sbjct: 383 VEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNELFIVEGDSAGGS 442
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY
Sbjct: 443 AKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQ 501
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCY--- 417
K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y
Sbjct: 502 KLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGI 561
Query: 418 -DDAELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ +LK + + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+
Sbjct: 562 DQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEAD 621
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
VF LMG RV+ R++ I+ A LD
Sbjct: 622 KVFDMLMGDRVEPRRDFIEENAVYSTLD 649
>sp|P21558|GYRB_HALL2 DNA gyrase subunit B OS=Haloferax lucentense (strain DSM 14919 /
JCM 9276 / NCIMB 13854 / Aa 2.2) GN=gyrB PE=3 SV=1
Length = 639
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 234/498 (46%), Positives = 330/498 (66%), Gaps = 9/498 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ ++ G+P V ++ + GT IRFWPD +F T +FD T+ R+RELAF
Sbjct: 142 WTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGIFETT-EFDFKTLENRLRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I+L SD ++ + + F GG+ E+V++LN K LHD V+ + + +GI +
Sbjct: 201 LNSGVEISL----SDERTDESSTFLFEGGIREFVEYLNETKTALHDDVIYYDDESEGIEV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISL 180
++A+Q +D ++ +AN+I T +GGTH+ G K +LTR +N + D D +L
Sbjct: 257 EIAMQ-ATDELQGSIHAFANNINTREGGTHLTGFKTALTRVVNDYANSHDMLDDLDGDNL 315
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
GE VREGLT +ISV+ P+P+FEGQTKT+LGN EVR +V+ + L + E +PD +
Sbjct: 316 RGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESVTHQQLGTFFEENPDTATA 375
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+SK++ A +A AAK+A +L R+KS L S+SLPGKLADC S P ESE+FIVEGDSAGG
Sbjct: 376 IISKAVEAARARKAAKQAEELTRRKSALESTSLPGKLADCQSRDPSESELFIVEGDSAGG 435
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR+FQAILPL+GKILNVE+ + +N+EI+ LI A+G GV G++F E RY
Sbjct: 436 SAKQGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRALITAIGGGV-GDEFDIEKARY 494
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
++I++TDADVDGAHIRTLLLT YR+ + L + G +Y PPLY+V D+A
Sbjct: 495 QRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYAAQPPLYRVRYRGNTYDAMDEA 554
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
E ++ + +QRFKGLGEM P QLW+TT+NPE R+LK++ +EDAA A+ +F+
Sbjct: 555 ERDRIIEEECNGNPTQVQRFKGLGEMNPDQLWDTTMNPENRVLKRITVEDAAAADRMFNI 614
Query: 481 LMGARVDTRKELIQNAAN 498
LMG V RK+ I++ AN
Sbjct: 615 LMGDAVGPRKQFIKDHAN 632
>sp|D4GZ01|GYRB_HALVD DNA gyrase subunit B OS=Haloferax volcanii (strain ATCC 29605 / DSM
3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 /
DS2) GN=gyrB PE=1 SV=1
Length = 639
Score = 428 bits (1101), Expect = e-119, Method: Compositional matrix adjust.
Identities = 233/498 (46%), Positives = 330/498 (66%), Gaps = 9/498 (1%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ ++ G+P V ++ + GT IRFWPD +F T +FD T+ R+RELAF
Sbjct: 142 WTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGIFETT-EFDFKTLENRLRELAF 200
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITI 121
LN + I+L SD ++ + + F GG+ E+V++LN K LHD V+ + + +GI +
Sbjct: 201 LNSGVEISL----SDERTDESSTFLFEGGIREFVEYLNETKTALHDDVIYYDDESEGIEV 256
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISL 180
++A+Q +D ++ +AN+I T +GGTH+ G K +LTR +N + D D +L
Sbjct: 257 EIAMQ-ATDELQGSIHAFANNINTREGGTHLTGFKTALTRVVNDYANTHDMLDDLDGDNL 315
Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
GE VREGLT +IS++ P+P+FEGQTKT+LGN EVR +V+ + L + E +PD +
Sbjct: 316 RGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIVESVTHQQLGTFFEENPDTATA 375
Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
I+SK++ A +A AAK+A +L R+KS L S+SLPGKLADC S P ESE+FIVEGDSAGG
Sbjct: 376 IISKAVEAARARKAAKQAEELTRRKSALESTSLPGKLADCQSRDPAESELFIVEGDSAGG 435
Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
SAKQGRDR+FQAILPL+GKILNVE+ + +N+EI+ LI A+G GV G++F E RY
Sbjct: 436 SAKQGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRALITAIGGGV-GDEFDIEKARY 494
Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
++I++TDADVDGAHIRTLLLT YR+ + L + G +Y PPLY+V D+A
Sbjct: 495 QRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYAAQPPLYRVRYRGNTYDAMDEA 554
Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
E ++ + +QRFKGLGEM P QLW+TT+NPE R+LK++ +EDAA A+ +F+
Sbjct: 555 ERDRIIEEECNGNPTQVQRFKGLGEMNPDQLWDTTMNPENRVLKRITVEDAAAADRMFNI 614
Query: 481 LMGARVDTRKELIQNAAN 498
LMG V RK+ I++ AN
Sbjct: 615 LMGDAVGPRKQFIKDHAN 632
>sp|P33769|GYRB_BORBU DNA gyrase subunit B OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=gyrB PE=3 SV=4
Length = 634
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/509 (45%), Positives = 342/509 (67%), Gaps = 21/509 (4%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q +S+G P T V V GT++ F D ++F T + ++ + + R++ELAF
Sbjct: 138 FRQTFSKGIP----TSKVEVVGESSVTGTKVTFLADSEIFET-LDYNFDVLEKRLKELAF 192
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN K+ I++ ED K + ++++F GG++ +V +L D K + GF DV
Sbjct: 193 LNDKIYISI--EDKRIGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSEPYYIDGFINDV-- 248
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+++ L+W +++YSD +L + N+I T +GGTH+ G ++ LT+ +N K SK K
Sbjct: 249 -IVNVGLKW-TESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSKISKKDIP 306
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+G+ +EGLT +ISV+VP P+FEGQTK++LGN E+RK+V+ V E+L E + L+P +
Sbjct: 307 NLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVVVYEHLLEIINLNPLEI 366
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
D+IL K++ A +A AA++AR+ R+K+ S +LPGKLADC+S P E EI+IVEGDSA
Sbjct: 367 DTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTSKNPLEREIYIVEGDSA 426
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAK GR+R FQAILPL GK+LNVE+ E + N+++ +I +LG GV G+ F L
Sbjct: 427 GGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGV-GKTFDITKL 485
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RYHKIII+ DADVDG+HIRTLLL FF+RY + L + G IY+ +PPLYK++ ++ Y Y+
Sbjct: 486 RYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYFYE 545
Query: 419 DAELKKVKSSFPS---NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
+ E +K S + N++ S+QR+KGLGEM P QLWETT++P +R ++ + I+DA EA
Sbjct: 546 EKEKEKFLDSIETKNRNSI-SLQRYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAIEAE 604
Query: 476 VVFSSLMGARVDTRKELI-QNAANLVNLD 503
+F +LMG V+ RKE I QNA N++NLD
Sbjct: 605 KIFVTLMGDLVEPRKEFIEQNALNVINLD 633
>sp|P0A4M0|GYRB_STRR6 DNA gyrase subunit B OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=gyrB PE=3 SV=1
Length = 648
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/509 (44%), Positives = 336/509 (66%), Gaps = 17/509 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L V D+ GT + F PD ++FT FD + + RI+ELAF
Sbjct: 148 HYQEYRRGHVVADLEI----VGDTDKTGTTVHFTPDPKIFTETTIFDFDKLNKRIQELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E+ ++ Y + GG+ YV+++N +K + D + ++D IT+
Sbjct: 204 LNRGLQISITDKRQGLEQTKH--YHYEGGIASYVEYINENKDVIFDTPIYTDGEMDDITV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y + ++ +AN+I T +GGTH +G + +LTR +N +K+K +KD + +L+
Sbjct: 262 EVAMQYTT-GYHENVMSFANNIHTHEGGTHEQGFRTALTRVINDYARKNKLLKDNEDNLT 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P + I
Sbjct: 321 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLMENPQIAKRI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P E+E+FIVEGDSAGGS
Sbjct: 381 VEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADCSSNNPAETELFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G +F RY
Sbjct: 441 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GAEFDVSKARYQ 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++++TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +++
Sbjct: 500 KLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQPPIYGVKVGSEIKEYIQPGA 559
Query: 422 LKKVKSSFPSNALYS-------IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
+++K + A YS IQR+KGLGEM QLWETT++PE R++ ++ ++DAAEA
Sbjct: 560 DQEIKLQ-EALARYSEGRTKPTIQRYKGLGEMDDHQLWETTMDPEHRLMARVSVDDAAEA 618
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLD 503
+ +F LMG RV+ R+E I+ A LD
Sbjct: 619 DKIFDMLMGDRVEPRREFIEENAVYSTLD 647
>sp|P0A4L9|GYRB_STRPN DNA gyrase subunit B OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=gyrB PE=3 SV=1
Length = 648
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/509 (44%), Positives = 336/509 (66%), Gaps = 17/509 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
++Q+Y RG V L V D+ GT + F PD ++FT FD + + RI+ELAF
Sbjct: 148 HYQEYRRGHVVADLEI----VGDTDKTGTTVHFTPDPKIFTETTIFDFDKLNKRIQELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITI 121
LN L I++ + E+ ++ Y + GG+ YV+++N +K + D + ++D IT+
Sbjct: 204 LNRGLQISITDKRQGLEQTKH--YHYEGGIASYVEYINENKDVIFDTPIYTDGEMDDITV 261
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++A+Q+ + Y + ++ +AN+I T +GGTH +G + +LTR +N +K+K +KD + +L+
Sbjct: 262 EVAMQYTT-GYHENVMSFANNIHTHEGGTHEQGFRTALTRVINDYARKNKLLKDNEDNLT 320
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P + I
Sbjct: 321 GEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLMENPQIAKRI 380
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS P E+E+FIVEGDSAGGS
Sbjct: 381 VEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADCSSNNPAETELFIVEGDSAGGS 440
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G +F RY
Sbjct: 441 AKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GAEFDVSKARYQ 499
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
K++++TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +++
Sbjct: 500 KLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQPPIYGVKVGSEIKEYIQPGA 559
Query: 422 LKKVKSSFPSNALYS-------IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 474
+++K + A YS IQR+KGLGEM QLWETT++PE R++ ++ ++DAAEA
Sbjct: 560 DQEIKLQ-EALARYSEGRTKPTIQRYKGLGEMDDHQLWETTMDPEHRLMARVSVDDAAEA 618
Query: 475 NVVFSSLMGARVDTRKELIQNAANLVNLD 503
+ +F LMG RV+ R+E I+ A LD
Sbjct: 619 DKIFDMLMGDRVEPRREFIEENAVYSTLD 647
>sp|P34031|GYRB_SPICI DNA gyrase subunit B OS=Spiroplasma citri GN=gyrB PE=3 SV=1
Length = 640
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 228/511 (44%), Positives = 330/511 (64%), Gaps = 21/511 (4%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
ME+H + G+ +T + V S GT + F PD+++F F +TI RI++L
Sbjct: 142 MEFH---NGGQILTPIK----EVGSTSETGTTVTFLPDEKIFKETTIFSFSTIQNRIKQL 194
Query: 61 AFLNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLN-TDKKPLHDVVGFRKDV 116
FLN L I+L R+ED EK Y F G+++YV LN T PL+DV
Sbjct: 195 VFLNKGLEISLVDLREEDE--EKTVL--YQFNNGIKDYVLELNKTIGTPLNDVFYVEGIE 250
Query: 117 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK--SKTVK 174
D I ++ LQ+ +D YS+ + + N+I T +GGTH EG + ++ R +N+ K +K K
Sbjct: 251 DNIVVEFGLQY-NDNYSENIFSFCNNINTHEGGTHEEGARLAIVREINNYFKNQINKNNK 309
Query: 175 DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELH 234
+ + + ++EG+T IIS+R P P++EGQT +L N EV+K+V V + L+ YL +
Sbjct: 310 GNEDKFTWDDIKEGMTIIISIRHPEPQYEGQTNQKLLNSEVKKIVSNIVGKGLSSYLLEN 369
Query: 235 PDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVE 294
P+ I+ K +LKA + A+RA+++ R+K V+ S SLPGKL+DC + + +E++IVE
Sbjct: 370 PEDAKKIIEKISLSLKATIVAQRAKEITRRKIVMDSFSLPGKLSDCETKDAKIAELYIVE 429
Query: 295 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 354
GDSAGGSAK GR+R+FQAILPLRGKILNVE+ + +++N EI ++I ALG G+K ++F
Sbjct: 430 GDSAGGSAKSGRNRKFQAILPLRGKILNVEKAKQIKIFENNEINSIITALGAGIK-DNFN 488
Query: 355 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 414
+ LRY K+II+TDADVDGAHIR LLLTFFYRY K L + G IY+ PPLYKVE Q++
Sbjct: 489 DKKLRYQKVIIMTDADVDGAHIRILLLTFFYRYMKDLIENGNIYIAQPPLYKVENSNQIR 548
Query: 415 YCY-DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
Y Y D+ + N Y+IQR+KGLGEM P QLWETT++PE+R+L ++ + +A E
Sbjct: 549 YVYSDNELELYKEELLKQNKNYTIQRYKGLGEMNPEQLWETTMDPERRLLLKVSVNNAFE 608
Query: 474 ANVVFSSLMGARVDTRKELI-QNAANLVNLD 503
AN++ + LMG V+ RK+ I +NA + NLD
Sbjct: 609 ANLICNELMGENVEPRKKFIRENAKYVKNLD 639
>sp|O87545|GYRB_TREDE DNA gyrase subunit B OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=gyrB PE=3 SV=1
Length = 638
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/508 (44%), Positives = 331/508 (65%), Gaps = 14/508 (2%)
Query: 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
E++ K+ +G ++ V + ++ GT IR+ D +FT ++ +A R+REL
Sbjct: 139 FEHYAKFEKG----SILEPVKKIGETEKSGTVIRWAVDPSIFTETTVYNFEVLATRLREL 194
Query: 61 AFLNPKLTIALRKED-SDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDG 118
AFLN K++I +R E S P++ + F GG+ ++V +LN K+ V + +
Sbjct: 195 AFLNSKISITMRDERLSTPKEVTFA---FEGGISQFVSYLNESKQVFPKSPVFIEGEKND 251
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK-SKTVK--D 175
I ++A+Q+ +D Y++ +L + N I T +GGTH+EG K +LTR +N KK K VK D
Sbjct: 252 ILCEVAIQY-NDGYNENLLSFVNDINTREGGTHLEGFKTALTRVMNDFLKKYPKLVKKMD 310
Query: 176 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 235
K+ L+GE VR GLT I+SV+VP P+FEGQTKT+LGN +VR +VD V E LT + E +P
Sbjct: 311 KEEKLTGEDVRAGLTAIVSVKVPEPQFEGQTKTKLGNSDVRGIVDSFVNEKLTLFFEQNP 370
Query: 236 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 295
+ ++ +L K ++ A +AA+RA++ R+KS L S LPGKLADCS PE E++IVEG
Sbjct: 371 NEVEKVLEKCVAEAAARIAARRAKEATRRKSGLDSFGLPGKLADCSLKDPESCEVYIVEG 430
Query: 296 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK 355
DSAGGSAK+GRD + QAILPL GK+LNVE+ + NE++Q +I LG G+ G+DF
Sbjct: 431 DSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVVNNEKLQPIIATLGTGI-GKDFNI 489
Query: 356 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 415
E LRYHK+II+ DADVDG+HIRTLLLTFF+RY + ++G +Y+ +PPLYK+ K+ Y
Sbjct: 490 EKLRYHKVIIMADADVDGSHIRTLLLTFFFRYMPQVIEKGHVYLAMPPLYKISHNKKEWY 549
Query: 416 CYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 475
Y+D E V ++QR+KGLGEM QLWETT++P +R + ++ + DA EA+
Sbjct: 550 VYNDDERDSVLDQIGRGNNAAVQRYKGLGEMDGTQLWETTMDPARRKMMRVTLPDAVEAD 609
Query: 476 VVFSSLMGARVDTRKELIQNAANLVNLD 503
+FS+LMG V+ R++ I+ A NLD
Sbjct: 610 RIFSTLMGEEVEPRRKFIEENAVYANLD 637
>sp|P50074|GYRBR_STRSH DNA gyrase subunit B, novobiocin-resistant OS=Streptomyces
spheroides GN=gyrBR PE=2 SV=1
Length = 677
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 233/527 (44%), Positives = 329/527 (62%), Gaps = 32/527 (6%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y G P L H ++ R GT + FW D +F T ++ T+A R +E+AF
Sbjct: 161 WTQDYRDGAPTAPLARH----EATSRTGTSLTFWADGDIFETT-EYSFETLARRHQEMAF 215
Query: 63 LNPKLTIALRKE-------------DSDPEKNQYNEYFFAGGLEEYVQWLNTDK-KPLHD 108
LN LT+ L E DSDP + Y + GG+ ++V LN K +P H
Sbjct: 216 LNGGLTLTLTDERSSARATAAVDEADSDPTAKTVS-YRYDGGITDFVVHLNARKGEPAHP 274
Query: 109 VVGFRKDVDG---ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNS 165
V D ++ ++ALQW Y+D++ YAN+I T +GGTH EG + +LT +N
Sbjct: 275 SVITIAAEDTERLLSAEIALQWNGQ-YTDSVYSYANAIHTHEGGTHEEGFRTALTTVVNR 333
Query: 166 LGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQE 225
++ + ++DKD +LSGE +REGLT IISV V P+FEGQTKT+LGN EVR ++ + V E
Sbjct: 334 YAREKRLLRDKDANLSGEDIREGLTAIISVNVGEPQFEGQTKTKLGNTEVRTLLQKIVHE 393
Query: 226 YLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTP 285
+L ++ + +P+ I+ K++ A A +AA++ARDL R+K +L +++LPGKL+DC S P
Sbjct: 394 HLADWFDRNPNEAVDIVRKAVQAATARVAARKARDLTRRKGLLETAALPGKLSDCQSNDP 453
Query: 286 EESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALG 345
SEIFIVEGDSAGGSAK GR+ ++QAILP+RGKILNVE+ + +N+E Q LI A G
Sbjct: 454 ATSEIFIVEGDSAGGSAKAGRNPQYQAILPIRGKILNVEKARIDKVLQNQENQALISAFG 513
Query: 346 LGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLY 405
GV EDF LRYHKII++ DADVDG HI TLLLTF +R+ + L +EG +++ PPLY
Sbjct: 514 TGVH-EDFDIAKLRYHKIILMADADVDGQHISTLLLTFLFRFMRPLVEEGHVHLSRPPLY 572
Query: 406 KVERGKQ-VQYCYDDAE----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQ 460
K++ ++ V+Y Y D E L++ + SIQRFKGLGEM +L TT++P+
Sbjct: 573 KIKWSREHVEYAYSDRERNTLLERGRRDGRRIRDDSIQRFKGLGEMNAEELRVTTMDPDH 632
Query: 461 RMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
R+L Q+ ++DAA A+ +FS LMG V+ R+ IQ A V LDI
Sbjct: 633 RVLGQVTLDDAAFADDLFSVLMGEDVEARRHFIQRNAQDVRF--LDI 677
>sp|O08399|GYRB_TREPA DNA gyrase subunit B OS=Treponema pallidum (strain Nichols) GN=gyrB
PE=1 SV=1
Length = 637
Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust.
Identities = 234/513 (45%), Positives = 330/513 (64%), Gaps = 26/513 (5%)
Query: 2 EYHQKYSRGKPVTTLTCHVLPVDSK---DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIR 58
EY+QK++ G P+ PV+ + +++GT IR+ D +F + +D + + R+R
Sbjct: 139 EYYQKFNVGMPLA-------PVEKRGVSEKRGTIIRWQADPSIFKETVAYDFDVLLTRLR 191
Query: 59 ELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK-----KPLHDVVGFR 113
ELAFLN + I LR E K E+ F GG+ +V +LN K +PL+ + G +
Sbjct: 192 ELAFLNSTVVIQLRDERLATAKQV--EFAFEGGIRHFVSYLNRGKSVVPERPLY-IEGSK 248
Query: 114 KDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTV 173
DV +++ALQ+ D Y++ + + N I T +GGTH+EG K++LTR N KKS +
Sbjct: 249 SDV---LVEVALQY-HDGYTENVQSFVNDINTREGGTHLEGFKSALTRVANDFLKKSPKL 304
Query: 174 KDK---DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEY 230
K + L GE VR GLT ++SV++P P+FEGQTKT+LGN EVR +VD V E LT Y
Sbjct: 305 AKKIEREEKLVGEDVRAGLTVVLSVKIPEPQFEGQTKTKLGNSEVRGIVDSLVGERLTLY 364
Query: 231 LELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEI 290
E +P VL IL KS++ +A LAA+RA++ R+KS + S LPGKLADCS P + E+
Sbjct: 365 FEQNPGVLTKILEKSIAEAQARLAARRAKEAARRKSGMDSFGLPGKLADCSLKDPAKCEV 424
Query: 291 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG 350
+IVEGDSAGGSAK+GRD + QAILPL GK+LNVE+ + NE++Q +I LG GV G
Sbjct: 425 YIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLHNEKLQPIIATLGTGV-G 483
Query: 351 EDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG 410
+DF +RYHK+II+ DADVDG+HIRTLLLTFF+RY + + G +Y+ +PPLY++
Sbjct: 484 KDFDLTRIRYHKVIIMADADVDGSHIRTLLLTFFFRYLPQIIEAGYVYLAMPPLYRIAWS 543
Query: 411 KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIED 470
K+ Y Y D E + S + ++QR+KGLGEM QLWETT+NP +R + Q+V+ D
Sbjct: 544 KKELYVYSDTERDEALESIGKKSGVAVQRYKGLGEMDGTQLWETTMNPVRRKMMQVVLSD 603
Query: 471 AAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503
A EA+ VFS+LMG V+ R++ I+ A LD
Sbjct: 604 AVEADRVFSTLMGEDVEPRRKFIEENAIYARLD 636
>sp|P50075|GYRBS_STRSH DNA gyrase subunit B, novobiocin-sensitive OS=Streptomyces
spheroides GN=gyrBS PE=3 SV=1
Length = 684
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 230/533 (43%), Positives = 332/533 (62%), Gaps = 42/533 (7%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q Y G P T ++ D GT + FW D VF T ++ T++ R +E+AF
Sbjct: 161 WTQDYKLGVP----TRRCAQNEATDETGTTVTFWADPDVFETT-EYSFETLSRRFQEMAF 215
Query: 63 LNPKLTIALRKE-------------DSDPEKNQYNE------YFFAGGLEEYVQWLNTDK 103
LN LT+ L E +D + E Y++ GG+ ++V++LN+ K
Sbjct: 216 LNKGLTLKLTDERESAKAVVGADVAGTDSAETPGEEPVRSVTYYYEGGIVDFVKYLNSRK 275
Query: 104 KPL-HDVVGFRKDVDG------ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVK 156
L H V D+D +++++A+QW S YS+ + +AN+I T +GGTH EG +
Sbjct: 276 GDLIHPTV---IDIDAEDKERMLSVEIAMQWNSQ-YSEGVYSFANTIHTHEGGTHEEGFR 331
Query: 157 ASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVR 216
A++T +N ++ K +++KD +L+GE +REGLT IISV++ P+FEGQTKT+LGN E +
Sbjct: 332 AAMTGLVNRYAREKKFLREKDDNLAGEDIREGLTAIISVKLGEPQFEGQTKTKLGNTEAK 391
Query: 217 KVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGK 276
V + V E+LT++ + HP+ I+ KS+ A A +AA++ARDL R+K +L S+SLPGK
Sbjct: 392 TFVQKIVHEHLTDWFDRHPNEAADIIRKSIQAATARVAARKARDLTRRKGLLESASLPGK 451
Query: 277 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEE 336
L+DC S P + EIFIVEGDSAGGSAK GR+ ++QAILP+RGKILNVE+ + +N E
Sbjct: 452 LSDCQSNDPSKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDKILQNTE 511
Query: 337 IQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGC 396
+Q LI A G GV EDF E LRYHKII++ DADVDG HI TLLLTF +R+ + L + G
Sbjct: 512 VQALISAFGTGVH-EDFDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAGH 570
Query: 397 IYVGVPPLYKVERGK-QVQYCYDDAELKKVKSSFPSNALY----SIQRFKGLGEMMPVQL 451
+Y+ PPLYK++ G+ +Y Y D E + N SIQRFKGLGEM +L
Sbjct: 571 VYLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQNGKRIKEDSIQRFKGLGEMNAEEL 630
Query: 452 WETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 503
TT++ + R+L Q+ ++DAA+A+ +FS LMG V+ R+ IQ NA ++ LD
Sbjct: 631 RITTMDVDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRFLD 683
>sp|P22447|GYRB_MYCPN DNA gyrase subunit B OS=Mycoplasma pneumoniae (strain ATCC 29342 /
M129) GN=gyrB PE=1 SV=1
Length = 650
Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/487 (44%), Positives = 314/487 (64%), Gaps = 18/487 (3%)
Query: 29 QGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF 88
GT++ F PD V + + IA R+++LAFLN + I D + Q + +
Sbjct: 169 HGTKVEFVPDFTVMEKS-DYKQTVIASRLQQLAFLNKGIQIDFV--DERRQNPQSFSWKY 225
Query: 89 AGGLEEYVQWLNTDKKPLHDVVGFRKDVDG-----------ITIDLALQWCSDAYSDTML 137
GGL +Y+ LN +K+PL + + F + D I +++A Q+ + Y+ ++
Sbjct: 226 DGGLVQYIHHLNNEKEPLFEDIIFGEKTDTVKSVSRDESYTIKVEVAFQY-NKTYNQSIF 284
Query: 138 GYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRV 197
+ N+I T +GGTH+EG + +L + +N ++K +K+ D ++ + + EGLT IIS++
Sbjct: 285 SFCNNINTTEGGTHVEGFRNALVKIINRFAVENKFLKETDEKITRDDICEGLTAIISIKH 344
Query: 198 PNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKR 257
PNP++EGQTK +LGN EVR +V+ V E ++ +P ++I+ K+L A +A ++
Sbjct: 345 PNPQYEGQTKKKLGNTEVRPLVNSIVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQE 404
Query: 258 ARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLR 317
AR+L R+KS S SLPGKLADC++ P SE++IVEGDSAGG+AK GRDR FQAILPLR
Sbjct: 405 ARELTRRKSPFDSGSLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLR 464
Query: 318 GKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIR 377
GKILNVE+ ++ N EI L+ A+G G+K DF+ E LRY+KIII+TDADVDGAHIR
Sbjct: 465 GKILNVEKSHFEQIFNNVEISALVMAVGCGIK-PDFELEKLRYNKIIIMTDADVDGAHIR 523
Query: 378 TLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSI 437
TLLLTFF+R+ L ++G IY+ PPLYKV + Y D +L++ K P N Y++
Sbjct: 524 TLLLTFFFRFMYPLVEQGNIYIAQPPLYKVSYSNKDLYMQTDVQLEEWKQQHP-NLKYNL 582
Query: 438 QRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNA 496
QR+KGLGEM +QLWETT++P+ R L ++ +EDA+ A+ FS LMG V R+E I QNA
Sbjct: 583 QRYKGLGEMDAIQLWETTMDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIEQNA 642
Query: 497 ANLVNLD 503
N+ N+D
Sbjct: 643 RNVKNID 649
>sp|P35886|GYRB_STRCO DNA gyrase subunit B OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=gyrB PE=3 SV=1
Length = 686
Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust.
Identities = 226/526 (42%), Positives = 334/526 (63%), Gaps = 33/526 (6%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q+Y G P +L H ++ + GT + FW D +F T + T++ R +E+AF
Sbjct: 168 WTQEYKLGVPTASLARH----EATEETGTTVTFWADGDIFETT-DYSFETLSRRFQEMAF 222
Query: 63 LNPKLTIALRKE------------DSDPEKNQYNE--YFFAGGLEEYVQWLNTDKKPL-H 107
LN L I L E + EK++ Y + GG+ ++V +LN+ K L H
Sbjct: 223 LNKGLKINLTDERESAKATAGADEAGEDEKHEVKSVSYHYEGGIVDFVTYLNSRKGELVH 282
Query: 108 ----DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 163
D+ KD +++++A+QW + Y++ + +AN I T +GGTH EG +A+LT +
Sbjct: 283 PTVIDLEAEDKD-KSLSLEVAMQW-NGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLI 340
Query: 164 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 223
N + K +++KD +L+G+ +REGLT IISV++ P+FEGQTKT+LGN EV+ V + V
Sbjct: 341 NKYARDKKLLREKDDNLTGDDIREGLTAIISVKLAEPQFEGQTKTKLGNTEVKTFVQKVV 400
Query: 224 QEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSST 283
E+LT++L+ +P+ I+ K + A A +AA++ARDL R+K +L S+SLPGKL+DC S
Sbjct: 401 YEHLTDWLDRNPNEAADIIRKGIQAAHARVAARKARDLTRRKGLLESASLPGKLSDCQSN 460
Query: 284 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 343
P + EIFIVEGDSAGGSAK GR+ ++QAILP+RGKILNVE+ + +N+EIQ +I A
Sbjct: 461 DPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDRILQNQEIQAMISA 520
Query: 344 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 403
G GV EDF E LRYHKII++ DADVDG HI TLLLTF +R+ + L + G +Y+ PP
Sbjct: 521 FGTGVH-EDFDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVESGHVYLSRPP 579
Query: 404 LYKVERGK-QVQYCYDDAE----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNP 458
LYK++ G+ +Y Y D E ++ + + S+QRFKGLGEM +L TT++
Sbjct: 580 LYKIKWGRDDFEYAYSDRERDALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRITTMDQ 639
Query: 459 EQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 503
E R+L Q+ ++DAA+A+ +FS LMG V+ R+ IQ NA ++ LD
Sbjct: 640 EHRVLGQVTLDDAAQADDLFSVLMGEDVEARRAFIQRNAKDVRFLD 685
>sp|Q59961|PARE_STRPN DNA topoisomerase 4 subunit B OS=Streptococcus pneumoniae serotype
4 (strain ATCC BAA-334 / TIGR4) GN=parE PE=1 SV=3
Length = 647
Score = 404 bits (1037), Expect = e-111, Method: Compositional matrix adjust.
Identities = 217/502 (43%), Positives = 324/502 (64%), Gaps = 20/502 (3%)
Query: 3 YHQKYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
Y Q++ G KPVTTL + K + GT++ F PD +F+T F +NTI+ R+ E A
Sbjct: 145 YKQRFENGGKPVTTLKK--IGTAPKSKTGTKVTFMPDATIFSTT-DFKYNTISERLNESA 201
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FL +T++L +D N+ E+ + G++++V +LN DK+ L V+ F + +G +
Sbjct: 202 FLLKNVTLSL----TDKRTNEAIEFHYENGVQDFVSYLNEDKEILTPVLYFEGEDNGFQV 257
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
++ALQ+ +D +SD +L + N++RT DGGTH G+K+++T+ +N +K+ +K+KD +L
Sbjct: 258 EVALQY-NDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVMNDYARKTGLLKEKDKNLE 316
Query: 182 GEHVREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
G REGL ++S+ VP +FEGQTK +LG+P R VVD V + LT +L + ++
Sbjct: 317 GSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDGIVADKLTFFLMENGELAS 376
Query: 240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSL--PGKLADCSSTTPEESEIFIVEGDS 297
+++ K++ A A AA++ARD R + GKL S P ++E+++VEGDS
Sbjct: 377 NLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDS 436
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDR+FQAILPLRGK++N + A + KNEEI +I +G GV G DF E
Sbjct: 437 AGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEEINTMIYTIGAGV-GADFSIED 495
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK----QV 413
Y KIII+TDAD DGAHI+TLLLTFFYRY + L + G +Y+ +PPLYK+ +GK +V
Sbjct: 496 ANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEV 555
Query: 414 QYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
Y + D EL++++ F A ++QR+KGLGEM QLWETT+NPE R L ++ IED A
Sbjct: 556 AYAWTDGELEELRKQFGKGA--TLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLAR 613
Query: 474 ANVVFSSLMGARVDTRKELIQN 495
A + LMG +V+ R++ I++
Sbjct: 614 AERRVNVLMGDKVEPRRKWIED 635
>sp|P47720|GYRB_MYCGA DNA gyrase subunit B OS=Mycoplasma gallisepticum (strain R(low /
passage 15 / clone 2)) GN=gyrB PE=3 SV=2
Length = 648
Score = 404 bits (1037), Expect = e-111, Method: Compositional matrix adjust.
Identities = 222/506 (43%), Positives = 325/506 (64%), Gaps = 22/506 (4%)
Query: 10 GKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTI 69
G P+ L ++ DSK +QGTRI+F PD + ++D IA RI +LAFLN +
Sbjct: 152 GVPLKPL--EIIGTDSK-KQGTRIQFVPDFSIME-QFEYDETIIADRIEQLAFLNKGIKF 207
Query: 70 ALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI-------- 121
E +D + Q E+ + GG+++YV+ LN K+P+ + + + +T+
Sbjct: 208 IFNDERTDKKTKQ--EWLYEGGIKQYVENLNASKEPIIPQIIYGEKKTKVTLPKRNLEVT 265
Query: 122 ---DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
++A Q+ ++ Y ++ + N+I T GGTH EG K +L + +N + K +K+ D
Sbjct: 266 MLLEVAFQY-TNGYYNSTYSFCNNIHTNQGGTHEEGFKNALYKIINRYALEKKFIKETDG 324
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+S E + EGLT IIS++ P+++GQTK RLGN EVR+ + V E L + +P+
Sbjct: 325 KISKEDLSEGLTAIISIKHSEPQYQGQTKDRLGNTEVREFTNSVVSELLERFFLENPEEA 384
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
I +K++SA+ + ++ A + R KS S+SLPGKLADC++ E SE++IVEGDSA
Sbjct: 385 AKITAKAVSAMFSRKRSEAALESAR-KSPFESASLPGKLADCTTKDMEISELYIVEGDSA 443
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAK GRDR +QAILPLRGK+LNVE+ + ++KNEEI+ LI A+G GV E F + +
Sbjct: 444 GGSAKSGRDRFYQAILPLRGKVLNVEKANHEKIFKNEEIRTLITAIGAGVNPE-FSLDKI 502
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYD 418
RY+KIII+TDADVDGAHIR LLLTFF+R+ L ++G +Y+ PPLY+V KQ +Y Y
Sbjct: 503 RYNKIIIMTDADVDGAHIRILLLTFFFRHMFPLIEKGHVYIAQPPLYRVSYNKQNKYIYS 562
Query: 419 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 478
DA+L++ K+ P N Y +QR+KGLGEM VQLWETT++PE+R L ++ I DAA A+ F
Sbjct: 563 DAQLEEWKNQNP-NVRYELQRYKGLGEMDDVQLWETTMDPEKRTLLKVSINDAANADKTF 621
Query: 479 SSLMGARVDTRKELIQ-NAANLVNLD 503
S LMG V R++ I+ NA ++ N+D
Sbjct: 622 SLLMGDEVSPRRDFIEKNAKSVKNID 647
>sp|Q9ZFK1|GYRB_BORHE DNA gyrase subunit B OS=Borrelia hermsii GN=gyrB PE=3 SV=1
Length = 634
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 223/505 (44%), Positives = 330/505 (65%), Gaps = 13/505 (2%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
+ Q YSRG P T V + +GT++ F D ++F T +++D T++ R+RELAF
Sbjct: 138 FKQTYSRGIP----TSEVDIIGVSSARGTKVTFLADSEIFET-LEYDFETLSKRLRELAF 192
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITI 121
LN K+ I++ ED K ++ E++F GG++ +V ++ + K + + F D + +
Sbjct: 193 LNDKIRISI--EDRRSGKEKFLEFYFEGGIKAFVDYITNNSKNIQNEPYFIEGSCDDVIV 250
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
+ L+W ++ YSD +L + N+I T +GGTH+ G K+ + ++ + SK K SL+
Sbjct: 251 SVGLKW-TEGYSDHILSFVNNINTREGGTHVAGFKSGFLKAMSEAFRDSKISKKDVPSLT 309
Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
+ +EGLT +IS+++P P+FEGQTK +LGN V+K+V+ V + L + ++ + +D I
Sbjct: 310 LDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETIVHDGLLKVIDDNLLEVDII 369
Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
L+K++ A +A AA++AR+ R+KS S +LPGKLADC+S P E EI+IVEGDSAGGS
Sbjct: 370 LNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPAEREIYIVEGDSAGGS 429
Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
AK GRDR QAILPL GK+LNVE+ E + N+++ +I +LG GV G+ F E LRYH
Sbjct: 430 AKMGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGV-GKTFYIEKLRYH 488
Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
KIII+ DADVDG+HIRTLLLTFF+RY + L + G +Y+ +PPLYK++ + Y YDD E
Sbjct: 489 KIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPPLYKLKYENREHYFYDDLE 548
Query: 422 LKKVKSSFPSNAL--YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
+ S + S+QR+KGLGEM P QLWETT+NP R +K + I DA +A +F
Sbjct: 549 KEAFLGSIETGKRDKVSLQRYKGLGEMNPTQLWETTMNPATRKMKLIKINDAIQAEKIFV 608
Query: 480 SLMGARVDTRKELI-QNAANLVNLD 503
+LMG V+ R+E I QNA ++VNLD
Sbjct: 609 TLMGDDVEPRREFIEQNALDVVNLD 633
>sp|Q59192|PARE_BACSU DNA topoisomerase 4 subunit B OS=Bacillus subtilis (strain 168)
GN=parE PE=3 SV=2
Length = 655
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/501 (43%), Positives = 313/501 (62%), Gaps = 22/501 (4%)
Query: 3 YHQKYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
Y Q++ G KPVT+L + + GT F PD +F+T ++ T++ R+RE A
Sbjct: 143 YQQRFENGGKPVTSLE----KIGKTKKTGTLTHFKPDPTMFSTTT-YNFETLSERLRESA 197
Query: 62 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
FL L I L E +D Q +++ G+E +V +LN +K L +VV F + I +
Sbjct: 198 FLLKGLKIELIDERND----QREVFYYENGIEAFVAYLNEEKDVLSEVVSFEGEHHSIEV 253
Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
D A Q+ +D YS+ +L + N++RT DGGTH G K ++TR N +K +K+KD +L
Sbjct: 254 DFAFQF-NDGYSENILSFVNNVRTKDGGTHESGAKTAMTRAFNEYARKVALLKEKDKNLE 312
Query: 182 GEHVREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239
G +REGL+ IISVR+P +FEGQTK +LG E R VD V E L +LE + D
Sbjct: 313 GTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVDAIVSEQLAYFLEENRDTAT 372
Query: 240 SILSKSLSALKAALAAKRARDLVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
++ K++ A +A AA++AR+ R +K ++L GKL S P ++E+++VEGDS
Sbjct: 373 LLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDS 432
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQA+LPLRGK++N E+ A ++KNEEI +I A+G GV G DF +
Sbjct: 433 AGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGV-GADFSIDD 491
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ----V 413
+ Y KIII+TDAD DGAHI+ LLLTFFYRY K L + G +++ +PPLYKV +G +
Sbjct: 492 INYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEII 551
Query: 414 QYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 473
+Y + D E+ V Y+IQR+KGLGEM QLWETT+NPE R L ++ I+DAA
Sbjct: 552 EYAWSDEEMGDVLKKVGKG--YTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAAR 609
Query: 474 ANVVFSSLMGARVDTRKELIQ 494
++LMG +V+ R++ I+
Sbjct: 610 VERRVTTLMGDKVEPRRKWIE 630
>sp|P47249|GYRB_MYCGE DNA gyrase subunit B OS=Mycoplasma genitalium (strain ATCC 33530 /
G-37 / NCTC 10195) GN=gyrB PE=3 SV=1
Length = 650
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 213/492 (43%), Positives = 317/492 (64%), Gaps = 18/492 (3%)
Query: 24 DSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQY 83
+S+ GT + F PD V + + I R+++LAFLN + I D+ + Q
Sbjct: 164 NSEKEHGTIVEFVPDFSVMEKS-DYKQTVIVSRLQQLAFLNKGIRIDFV--DNRKQNPQS 220
Query: 84 NEYFFAGGLEEYVQWLNTDKKPLHD----------VVGFRKDVD-GITIDLALQWCSDAY 132
+ + GGL EY+ LN +K+PL + V +D + + +++A Q+ + Y
Sbjct: 221 FSWKYDGGLVEYIHHLNNEKEPLFNEVIADEKTETVKAVNRDENYTVKVEVAFQY-NKTY 279
Query: 133 SDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCI 192
+ ++ + N+I T +GGTH+EG + +L + +N ++K +KD D ++ + V EGLT I
Sbjct: 280 NQSIFSFCNNINTTEGGTHVEGFRNALVKIINRFAVENKFLKDSDEKINRDDVCEGLTAI 339
Query: 193 ISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAA 252
IS++ PNP++EGQTK +LGN EVR +V+ V E ++ +P ++I+ K+L A +A
Sbjct: 340 ISIKHPNPQYEGQTKKKLGNTEVRPLVNSVVSEIFERFMLENPQEANAIIRKTLLAQEAR 399
Query: 253 LAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQA 312
++ AR+L R+KS S SLPGKLADC++ P SE++IVEGDSAGG+AK GRDR FQA
Sbjct: 400 RRSQEARELTRRKSPFDSGSLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQA 459
Query: 313 ILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVD 372
ILPLRGKILNVE+ + ++ N EI L+ A+G G+K DF+ E LRY KI+I+TDADVD
Sbjct: 460 ILPLRGKILNVEKSNFEQIFNNAEISALVMAIGCGIK-PDFELEKLRYSKIVIMTDADVD 518
Query: 373 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 432
GAHIRTLLLTFF+R+ L ++G I++ PPLYKV + Y + D +L++ KS P N
Sbjct: 519 GAHIRTLLLTFFFRFMYPLVEQGNIFIAQPPLYKVSYSHKDLYMHTDVQLEQWKSQNP-N 577
Query: 433 ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKEL 492
+ +QR+KGLGEM +QLWETT++P+ R L ++ +EDA+ A+ FS LMG V R+E
Sbjct: 578 VKFGLQRYKGLGEMDALQLWETTMDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREF 637
Query: 493 IQ-NAANLVNLD 503
I+ NA ++ N+D
Sbjct: 638 IEKNARSVKNID 649
>sp|Q9Z8R3|GYRB_CHLPN DNA gyrase subunit B OS=Chlamydia pneumoniae GN=gyrB PE=3 SV=1
Length = 805
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/425 (48%), Positives = 279/425 (65%), Gaps = 13/425 (3%)
Query: 3 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
Y ++SRG PVT L V DRQGT I F+PD ++F+T FD + + R+RELAF
Sbjct: 149 YQMEFSRGIPVTPLQY----VSVSDRQGTEIVFYPDPKIFSTC-TFDRSILMKRLRELAF 203
Query: 63 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDG 118
LN +TI ++D D ++ +F+ GG++ +V +LN +K+ L + G R DG
Sbjct: 204 LNRGITIVF-EDDRDVSFDKVT-FFYEGGIQSFVSYLNQNKESLFSEPIYICGTRVGDDG 261
Query: 119 -ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 177
I + ALQW S YS+ + YAN+I T GGTH+ G +LTR +N+ K K+
Sbjct: 262 EIEFEAALQWNS-GYSELVYSYANNIPTRQGGTHLTGFSTALTRVINTYIKAHNLAKNNK 320
Query: 178 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237
++L+GE +REGLT +ISV+VPNP+FEGQTK +LGN +V V Q V E LT + E +P +
Sbjct: 321 LALTGEDIREGLTAVISVKVPNPQFEGQTKQKLGNSDVSSVAQQVVGEALTIFFEENPQI 380
Query: 238 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 297
I+ K A +A AAK+AR+L +KS L S+ LPGKL DC PE+ E++IVEGDS
Sbjct: 381 ARMIVDKVFVAAQAREAAKKARELTLRKSALDSARLPGKLIDCLEKDPEKCEMYIVEGDS 440
Query: 298 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 357
AGGSAKQGRDRRFQAILP+RGKILNVE+ +++N+EI +I ALG G+ ++F
Sbjct: 441 AGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQEIGTIIAALGCGIGADNFNLSK 500
Query: 358 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 417
LRY +III+TDADVDG+HIRTLLLTFFYR+ L + C+Y+ PPLYKV + K +Y
Sbjct: 501 LRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENECVYIAQPPLYKVSKKKDFRYIL 560
Query: 418 DDAEL 422
+ E+
Sbjct: 561 SEKEM 565
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 52/71 (73%)
Query: 437 IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNA 496
IQR+KGLGEM QLW+TT+NPEQR L + ++DA EA+ +F+ LMG V R+E I++
Sbjct: 735 IQRYKGLGEMNADQLWDTTMNPEQRTLIHVSLKDAVEADHIFTMLMGEEVPPRREFIESH 794
Query: 497 ANLVNLDHLDI 507
A + +++LDI
Sbjct: 795 ALSIRINNLDI 805
>sp|P0A0K9|PARE_STAAW DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain MW2)
GN=parE PE=3 SV=1
Length = 663
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/468 (43%), Positives = 305/468 (65%), Gaps = 14/468 (2%)
Query: 35 FWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEE 94
F PD +F + F+ + ++ R++E AFL L I L S E+ ++ Y + G++E
Sbjct: 170 FKPDDTIFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEH--YHYEEGIKE 227
Query: 95 YVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEG 154
+V ++N K+ LHDV F + +GI +D+A Q+ +D YS+++L + N++RT DGGTH G
Sbjct: 228 FVSYVNEGKEVLHDVATFSGEANGIEVDVAFQY-NDQYSESILSFVNNVRTKDGGTHEVG 286
Query: 155 VKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP--EFEGQTKTRLGN 212
K ++TR N ++ +K KD +L G +REGLT ++SVR+P +FEGQTK++LG
Sbjct: 287 FKTAMTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGT 346
Query: 213 PEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVR--QKSVLRS 270
E R VD V + L YLE + S++ K++ A +A AA++AR+ R +K+ +
Sbjct: 347 SEARSAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKD 406
Query: 271 SSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAA 330
+ L GKL S E++E+++VEGDSAGGSAK GRDR+FQAILPLRGK++N E+
Sbjct: 407 TLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLED 466
Query: 331 MYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKT 390
++KNEEI +I +G GV G DFK E Y+++II+TDAD DGAHI+ LLLTFF++Y K
Sbjct: 467 IFKNEEINTIIHTIGAGV-GTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKP 525
Query: 391 LFDEGCIYVGVPPLYKVERG----KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEM 446
L G +++ +PPLYK+E+G K+V+Y + D EL K++ +++QR+KGLGEM
Sbjct: 526 LVQAGRVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKG--FTLQRYKGLGEM 583
Query: 447 MPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 494
P QLWETT+NPE R L ++ +ED ++ ++LMG +V R+E I+
Sbjct: 584 NPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMGDKVQPRREWIE 631
>sp|P0C1S7|PARE_STAAU DNA topoisomerase 4 subunit B OS=Staphylococcus aureus GN=parE PE=3
SV=1
Length = 663
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/468 (43%), Positives = 305/468 (65%), Gaps = 14/468 (2%)
Query: 35 FWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEE 94
F PD +F + F+ + ++ R++E AFL L I L S E+ ++ Y + G++E
Sbjct: 170 FKPDDTIFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEH--YHYEEGIKE 227
Query: 95 YVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEG 154
+V ++N K+ LHDV F + +GI +D+A Q+ +D YS+++L + N++RT DGGTH G
Sbjct: 228 FVSYVNEGKEVLHDVATFSGEANGIEVDVAFQY-NDQYSESILSFVNNVRTKDGGTHEVG 286
Query: 155 VKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP--EFEGQTKTRLGN 212
K ++TR N ++ +K KD +L G +REGLT ++SVR+P +FEGQTK++LG
Sbjct: 287 FKTAMTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGT 346
Query: 213 PEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVR--QKSVLRS 270
E R VD V + L YLE + S++ K++ A +A AA++AR+ R +K+ +
Sbjct: 347 SEARSAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKD 406
Query: 271 SSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAA 330
+ L GKL S E++E+++VEGDSAGGSAK GRDR+FQAILPLRGK++N E+
Sbjct: 407 TLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLED 466
Query: 331 MYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKT 390
++KNEEI +I +G GV G DFK E Y+++II+TDAD DGAHI+ LLLTFF++Y K
Sbjct: 467 IFKNEEINTIIHTIGAGV-GTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKP 525
Query: 391 LFDEGCIYVGVPPLYKVERG----KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEM 446
L G +++ +PPLYK+E+G K+V+Y + D EL K++ +++QR+KGLGEM
Sbjct: 526 LVQAGRVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKG--FTLQRYKGLGEM 583
Query: 447 MPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 494
P QLWETT+NPE R L ++ +ED ++ ++LMG +V R+E I+
Sbjct: 584 NPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMGDKVQPRREWIE 631
>sp|Q5HG65|PARE_STAAC DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain COL)
GN=parE PE=3 SV=2
Length = 663
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/468 (43%), Positives = 305/468 (65%), Gaps = 14/468 (2%)
Query: 35 FWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEE 94
F PD +F + F+ + ++ R++E AFL L I L S E+ ++ Y + G++E
Sbjct: 170 FKPDDTIFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEH--YHYEEGIKE 227
Query: 95 YVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEG 154
+V ++N K+ LHDV F + +GI +D+A Q+ +D YS+++L + N++RT DGGTH G
Sbjct: 228 FVSYVNEGKEVLHDVATFSGEANGIEVDVAFQY-NDQYSESILSFVNNVRTKDGGTHEVG 286
Query: 155 VKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP--EFEGQTKTRLGN 212
K ++TR N ++ +K KD +L G +REGLT ++SVR+P +FEGQTK++LG
Sbjct: 287 FKTAMTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGT 346
Query: 213 PEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVR--QKSVLRS 270
E R VD V + L YLE + S++ K++ A +A AA++AR+ R +K+ +
Sbjct: 347 SEARSAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKD 406
Query: 271 SSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAA 330
+ L GKL S E++E+++VEGDSAGGSAK GRDR+FQAILPLRGK++N E+
Sbjct: 407 TLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLED 466
Query: 331 MYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKT 390
++KNEEI +I +G GV G DFK E Y+++II+TDAD DGAHI+ LLLTFF++Y K
Sbjct: 467 IFKNEEINTIIHTIGAGV-GTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKP 525
Query: 391 LFDEGCIYVGVPPLYKVERG----KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEM 446
L G +++ +PPLYK+E+G K+V+Y + D EL K++ +++QR+KGLGEM
Sbjct: 526 LVQAGRVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKG--FTLQRYKGLGEM 583
Query: 447 MPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 494
P QLWETT+NPE R L ++ +ED ++ ++LMG +V R+E I+
Sbjct: 584 NPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMGDKVQPRREWIE 631
>sp|Q2FYS5|PARE_STAA8 DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain NCTC
8325) GN=parE PE=3 SV=1
Length = 663
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/468 (43%), Positives = 305/468 (65%), Gaps = 14/468 (2%)
Query: 35 FWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEE 94
F PD +F + F+ + ++ R++E AFL L I L S E+ ++ Y + G++E
Sbjct: 170 FKPDDTIFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEH--YHYEEGIKE 227
Query: 95 YVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEG 154
+V ++N K+ LHDV F + +GI +D+A Q+ +D YS+++L + N++RT DGGTH G
Sbjct: 228 FVSYVNEGKEVLHDVATFSGEANGIEVDVAFQY-NDQYSESILSFVNNVRTKDGGTHEVG 286
Query: 155 VKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP--EFEGQTKTRLGN 212
K ++TR N ++ +K KD +L G +REGLT ++SVR+P +FEGQTK++LG
Sbjct: 287 FKTAMTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGT 346
Query: 213 PEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVR--QKSVLRS 270
E R VD V + L YLE + S++ K++ A +A AA++AR+ R +K+ +
Sbjct: 347 SEARSAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKD 406
Query: 271 SSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAA 330
+ L GKL S E++E+++VEGDSAGGSAK GRDR+FQAILPLRGK++N E+
Sbjct: 407 TLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLED 466
Query: 331 MYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKT 390
++KNEEI +I +G GV G DFK E Y+++II+TDAD DGAHI+ LLLTFF++Y K
Sbjct: 467 IFKNEEINTIIHTIGAGV-GTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKP 525
Query: 391 LFDEGCIYVGVPPLYKVERG----KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEM 446
L G +++ +PPLYK+E+G K+V+Y + D EL K++ +++QR+KGLGEM
Sbjct: 526 LVQAGRVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKG--FTLQRYKGLGEM 583
Query: 447 MPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 494
P QLWETT+NPE R L ++ +ED ++ ++LMG +V R+E I+
Sbjct: 584 NPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMGDKVQPRREWIE 631
>sp|P66939|PARE_STAAN DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain
N315) GN=parE PE=1 SV=1
Length = 663
Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/468 (43%), Positives = 305/468 (65%), Gaps = 14/468 (2%)
Query: 35 FWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEE 94
F PD +F + F+ + ++ R++E AFL L I L S E+ ++ Y + G++E
Sbjct: 170 FKPDDTIFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEH--YHYEEGIKE 227
Query: 95 YVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEG 154
+V ++N K+ LHDV F + +GI +D+A Q+ +D YS+++L + N++RT DGGTH G
Sbjct: 228 FVSYVNEGKEVLHDVATFSGEANGIEVDVAFQY-NDQYSESILSFVNNVRTKDGGTHEVG 286
Query: 155 VKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP--EFEGQTKTRLGN 212
K ++TR N ++ +K KD +L G +REGLT ++SVR+P +FEGQTK++LG
Sbjct: 287 FKTAMTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGT 346
Query: 213 PEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVR--QKSVLRS 270
E R VD V + L YLE + S++ K++ A +A AA++AR+ R +K+ +
Sbjct: 347 SEARSAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKD 406
Query: 271 SSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAA 330
+ L GKL S E++E+++VEGDSAGGSAK GRDR+FQAILPLRGK++N E+
Sbjct: 407 TLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLED 466
Query: 331 MYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKT 390
++KNEEI +I +G GV G DFK E Y+++II+TDAD DGAHI+ LLLTFF++Y K
Sbjct: 467 IFKNEEINTIIHTIGAGV-GTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKP 525
Query: 391 LFDEGCIYVGVPPLYKVERG----KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEM 446
L G +++ +PPLYK+E+G K+V+Y + D EL K++ +++QR+KGLGEM
Sbjct: 526 LVQAGRVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKG--FTLQRYKGLGEM 583
Query: 447 MPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 494
P QLWETT+NPE R L ++ +ED ++ ++LMG +V R+E I+
Sbjct: 584 NPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMGDKVQPRREWIE 631
>sp|P66938|PARE_STAAM DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=parE PE=3 SV=1
Length = 663
Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/468 (43%), Positives = 305/468 (65%), Gaps = 14/468 (2%)
Query: 35 FWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEE 94
F PD +F + F+ + ++ R++E AFL L I L S E+ ++ Y + G++E
Sbjct: 170 FKPDDTIFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEH--YHYEEGIKE 227
Query: 95 YVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEG 154
+V ++N K+ LHDV F + +GI +D+A Q+ +D YS+++L + N++RT DGGTH G
Sbjct: 228 FVSYVNEGKEVLHDVATFSGEANGIEVDVAFQY-NDQYSESILSFVNNVRTKDGGTHEVG 286
Query: 155 VKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP--EFEGQTKTRLGN 212
K ++TR N ++ +K KD +L G +REGLT ++SVR+P +FEGQTK++LG
Sbjct: 287 FKTAMTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGT 346
Query: 213 PEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVR--QKSVLRS 270
E R VD V + L YLE + S++ K++ A +A AA++AR+ R +K+ +
Sbjct: 347 SEARSAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKD 406
Query: 271 SSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAA 330
+ L GKL S E++E+++VEGDSAGGSAK GRDR+FQAILPLRGK++N E+
Sbjct: 407 TLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLED 466
Query: 331 MYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKT 390
++KNEEI +I +G GV G DFK E Y+++II+TDAD DGAHI+ LLLTFF++Y K
Sbjct: 467 IFKNEEINTIIHTIGAGV-GTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKP 525
Query: 391 LFDEGCIYVGVPPLYKVERG----KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEM 446
L G +++ +PPLYK+E+G K+V+Y + D EL K++ +++QR+KGLGEM
Sbjct: 526 LVQAGRVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKG--FTLQRYKGLGEM 583
Query: 447 MPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 494
P QLWETT+NPE R L ++ +ED ++ ++LMG +V R+E I+
Sbjct: 584 NPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMGDKVQPRREWIE 631
>sp|P0C5C5|GYRB_MYCTU DNA gyrase subunit B OS=Mycobacterium tuberculosis GN=gyrB PE=1
SV=1
Length = 675
Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust.
Identities = 218/512 (42%), Positives = 319/512 (62%), Gaps = 39/512 (7%)
Query: 28 RQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR--------------- 72
+ G+ +RFW D VF T ++D T+A R++E+AFLN LTI L
Sbjct: 166 KTGSTVRFWADPAVFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVS 224
Query: 73 -------------KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDG 118
E + P K + + + GGL ++V+ +N K +H +V F G
Sbjct: 225 DVAEAPKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTG 284
Query: 119 ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 178
+++A+QW + YS+++ +AN+I T +GGTH EG +++LT +N K K +KDKD
Sbjct: 285 HEVEIAMQWNA-GYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDP 343
Query: 179 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238
+L+G+ +REGL +ISV+V P+FEGQTKT+LGN EV+ V + E LT + E +P
Sbjct: 344 NLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDA 403
Query: 239 DSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSA 298
+++K++S+ +A +AA++AR+LVR+KS LPGKLADC ST P +SE+++VEGDSA
Sbjct: 404 KVVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSA 463
Query: 299 GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEAL 358
GGSAK GRD FQAILPLRGKI+NVE+ + KN E+Q +I ALG G+ E F L
Sbjct: 464 GGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDE-FDIGKL 522
Query: 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ-VQYCY 417
RYHKI+++ DADVDG HI TLLLT +R+ + L + G +++ PPLYK++ + ++ Y
Sbjct: 523 RYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAY 582
Query: 418 DDAEL-----KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAA 472
D E +K+ N IQR+KGLGEM +LWETT++P R+L+Q+ ++DAA
Sbjct: 583 SDRERDGLLEAGLKAGKKINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAA 642
Query: 473 EANVVFSSLMGARVDTRKELI-QNAANLVNLD 503
A+ +FS LMG VD R+ I +NA ++ LD
Sbjct: 643 AADELFSILMGEDVDARRSFITRNAKDVRFLD 674
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,243,859
Number of Sequences: 539616
Number of extensions: 7792843
Number of successful extensions: 22790
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 21952
Number of HSP's gapped (non-prelim): 251
length of query: 507
length of database: 191,569,459
effective HSP length: 122
effective length of query: 385
effective length of database: 125,736,307
effective search space: 48408478195
effective search space used: 48408478195
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)