Query 010553
Match_columns 507
No_of_seqs 207 out of 1407
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 09:17:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gfh_A DNA topoisomerase 2; to 100.0 4E-125 1E-129 1090.7 24.2 474 1-503 167-664 (1177)
2 3k9f_C DNA topoisomerase 4 sub 100.0 3E-101 9E-106 744.1 18.0 237 261-500 21-261 (268)
3 3nuh_B DNA gyrase subunit B; t 100.0 2.7E-99 9E-104 770.9 14.0 249 257-507 3-420 (420)
4 3m4i_A DNA gyrase subunit B; G 100.0 7.1E-97 2E-101 706.2 12.6 228 277-507 9-242 (242)
5 2xkj_E Topoisomerase IV; type 100.0 1.1E-90 3.7E-95 762.1 17.2 255 242-501 1-256 (767)
6 3l4j_A DNA topoisomerase 2; to 100.0 1.8E-80 6E-85 674.5 14.0 229 271-503 4-244 (757)
7 3qx3_A DNA topoisomerase 2-bet 100.0 1E-79 3.5E-84 669.1 9.2 221 271-497 34-267 (803)
8 2xcs_B DNA gyrase subunit B, D 100.0 1.7E-76 5.8E-81 642.8 13.0 197 270-501 3-199 (692)
9 3lnu_A Topoisomerase IV subuni 100.0 2.6E-65 9E-70 533.2 27.0 252 1-265 154-408 (408)
10 1ei1_A DNA gyrase B, GYRB; ATP 100.0 1.5E-61 5.2E-66 505.8 27.5 252 1-261 138-390 (391)
11 1s16_A Topoisomerase IV subuni 100.0 4.9E-60 1.7E-64 494.6 28.3 249 1-260 135-387 (390)
12 1kij_A DNA gyrase subunit B; t 100.0 6.7E-59 2.3E-63 486.5 27.2 250 2-261 137-389 (390)
13 3cwv_A DNA gyrase, B subunit, 100.0 3E-53 1E-57 440.1 23.4 232 2-249 122-362 (369)
14 1zxm_A TOPO IIA ATPase, DNA to 100.0 1.2E-52 4.1E-57 438.9 16.6 229 1-252 160-394 (400)
15 1pvg_A DNA topoisomerase II; G 100.0 3E-51 1E-55 430.2 19.0 226 1-256 172-416 (418)
16 2q2e_B Type 2 DNA topoisomeras 99.8 1.3E-20 4.4E-25 206.4 -0.2 183 2-232 144-334 (621)
17 3ttz_A DNA gyrase subunit B; p 99.7 1.4E-17 4.8E-22 158.4 8.7 86 1-92 112-198 (198)
18 4duh_A DNA gyrase subunit B; s 99.7 5.9E-17 2E-21 156.4 8.5 82 1-90 139-220 (220)
19 4emv_A DNA topoisomerase IV, B 99.7 7.1E-17 2.4E-21 156.3 7.9 81 1-90 143-226 (226)
20 3fv5_A DNA topoisomerase 4 sub 99.4 4.3E-13 1.5E-17 127.8 7.3 78 2-88 122-201 (201)
21 2zbk_B Type 2 DNA topoisomeras 98.5 7.5E-09 2.5E-13 111.9 -1.9 140 27-201 166-310 (530)
22 1b63_A MUTL; DNA mismatch repa 98.3 6.4E-06 2.2E-10 84.0 13.1 156 26-210 140-312 (333)
23 3na3_A DNA mismatch repair pro 97.4 0.0012 4.2E-08 67.5 13.5 169 2-203 126-305 (348)
24 3h4l_A DNA mismatch repair pro 97.2 0.011 3.7E-07 60.9 17.9 176 2-209 122-337 (367)
25 1h7s_A PMS1 protein homolog 2; 96.5 0.024 8.2E-07 58.3 13.3 91 2-101 132-232 (365)
26 1mu5_A Type II DNA topoisomera 96.4 0.15 5E-06 54.2 18.9 89 119-223 351-445 (471)
27 2zbk_B Type 2 DNA topoisomeras 85.0 6.1 0.00021 42.3 12.1 99 119-233 350-457 (530)
28 2q2e_B Type 2 DNA topoisomeras 62.0 27 0.00092 38.1 9.6 100 119-231 353-463 (621)
29 1t6t_1 Putative protein; struc 50.9 4.7 0.00016 34.5 1.0 26 359-384 60-86 (118)
30 2fcj_A Small toprim domain pro 36.9 9.1 0.00031 32.7 0.6 55 359-428 49-103 (119)
31 3rkc_A Capsid protein; viral p 23.0 19 0.00064 30.9 0.2 17 309-326 76-92 (148)
No 1
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-125 Score=1090.66 Aligned_cols=474 Identities=23% Similarity=0.321 Sum_probs=372.5
Q ss_pred CEEEEEecCCCCCCcceeeecCCCCCCCCCeEEEEEeCccccccccCCCHHHHHHHHHHHhccCC---CcEEEEeecCCC
Q 010553 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP---KLTIALRKEDSD 77 (507)
Q Consensus 1 k~y~q~F~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~Ln~---Gl~I~l~der~~ 77 (507)
++|+|+|++|+++.+++.+. ..+.+++||+|+||||++||++ ..|+++++..|++++|+||+ ++.+.+++++.
T Consensus 167 k~y~q~f~~g~~~~~~~~i~--~~~~~~tGT~V~F~PD~~iF~~-~~~~~d~l~~~~r~~~~l~~~~~~~~~~~~g~~~- 242 (1177)
T 4gfh_A 167 QKYVQKWENNMSICHPPKIT--SYKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYLNGKSL- 242 (1177)
T ss_dssp EEEEEEEETTTTEECCCEEE--ECCSSCCCEEEEEEECHHHHTC-SSCCHHHHHHHHHHHHHHHHHSSSCEEEESSCBC-
T ss_pred EEEEEEEECCcccCCCCeee--cCCCCCCceEEEEEeCHHhcCC-cEeCHHHHHHHHHHHHHhcCCCceEEEEecCCee-
Confidence 47999999999998887762 1334579999999999999985 47999999999999998874 57788888764
Q ss_pred CCCCcceeEecCCCHHHHHHHHhcCCCCCC--------ceeEEEEeccceEEEEeeeecCCCCCceeeeeeCceecCCCC
Q 010553 78 PEKNQYNEYFFAGGLEEYVQWLNTDKKPLH--------DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGG 149 (507)
Q Consensus 78 ~~~~~~~~f~~~~Gl~~yv~~l~~~~~~~~--------~~i~~~~~~~~~~veval~~s~~~~~~~~~SFvN~I~T~~GG 149 (507)
+.++|++|+.+|++.++..+...+ ++..+..+..+.+||||++|+ +++ .+++||||||+|++||
T Consensus 243 ------~~~~f~~gi~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~eva~~~~-d~~-~~~~SFvN~I~T~~GG 314 (1177)
T 4gfh_A 243 ------KIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVS-DIS-FQQISFVNSIATTMGG 314 (1177)
T ss_dssp ------CCCSHHHHHGGGTTTC-----------------CCSCEEEEEETTEEEEEEEC-SSS-CEEEEEESSCEETTEE
T ss_pred ------EEeeccchhhhhhhhhccceeccccccccccCCCceEEEEeccceEEEeeccc-CCc-ceeeeeeeeeecCCCc
Confidence 357889999999988766543322 112223344456799999998 444 3467999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHhccCCCCcCCCCCHHhHhcccEEEEEEeecCCCCCCccccccCChhhHhhhhHhh-HHHHH
Q 010553 150 THIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV-QEYLT 228 (507)
Q Consensus 150 THv~g~~~al~~~in~~~kk~~~~k~~~~~i~~~diregL~~vvsv~i~nP~FegQTK~kL~n~~v~~~v~~~v-~~~l~ 228 (507)
|||+||++||+++||+|+++.+. .+++++|||+||++||||+|+||+|+||||++|+|+.....+...+ .+.+.
T Consensus 315 THv~gfr~altr~in~~~~k~~~-----~~~~~~DIregl~avISvki~~PqFegQTK~kL~s~~~~~~~~~~~~~~~~~ 389 (1177)
T 4gfh_A 315 THVNYITDQIVKKISEILKKKKK-----KSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYIN 389 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS-----SCCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGGGSSSCCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhhcc-----ccCCHHHHhCCceEEEEeeeccCccccchhhhhcCchhcceeeccchHHHhh
Confidence 99999999999999999876543 4689999999999999999999999999999999986554443322 23333
Q ss_pred HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCC---CCCCCCceEEEeecCCCCCccccc
Q 010553 229 EYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS---STTPEESEIFIVEGDSAGGSAKQG 305 (507)
Q Consensus 229 ~~l~~n~~~~~~I~~~~~~~~k~r~aakkar~~~~~k~~~~~~~lpgKL~Dc~---~~~~~~~eL~lvEGDSA~gsak~g 305 (507)
.+++ .. |+++++..+++++++++++...++|+.+ ..+ +||+||+ +++|++|||||||||||||||++|
T Consensus 390 ~~~~--~~----i~~~~~~~a~~~~~~~~~k~~~~~k~~~--~~~-~KL~d~~~~~skd~~~~ELfiVEGDSAgGsAk~G 460 (1177)
T 4gfh_A 390 KIMK--TD----LATRMFEIADANEENALKKSDGTRKSRI--TNY-PKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAG 460 (1177)
T ss_dssp HHTT--SH----HHHHHHHHHTTCC------------CCC--CSC-TTCBCCTTTTTTTTTTCEEEEEEHHHHHHHHHHH
T ss_pred hhhh--HH----HHHHHHHHHHHHHHHHHHhhhhhcchhh--ccc-cccccccccCCCCccceEEEEecCCchhhhHhhc
Confidence 3332 23 4444444444444444444444444432 223 4999987 789999999999999999999999
Q ss_pred C---CCCceEeeccCCccccccccCHHHHhhCcchHHHHHHhcCCccCCcCcccccccceEEEeecCCCCChhhHHHHHH
Q 010553 306 R---DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLT 382 (507)
Q Consensus 306 R---dr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~~~~~~~~~~~~LRY~kiiImtDaD~DG~HI~~Lllt 382 (507)
| +|+|||||||||||||||+|+.++|++|+||++|++|||||++.+.+|+++||||||||||||||||+||||||||
T Consensus 461 rak~~Rd~QAIlPLRGKiLNv~ka~~~kil~N~EI~~ii~alG~g~g~~~~d~~~LRY~KIiIMTDADvDGsHIrtLLlt 540 (1177)
T 4gfh_A 461 LAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIIN 540 (1177)
T ss_dssp HHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHHTTCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHHHHHH
T ss_pred ccccCcccEEecccCceechhhhhHHHHHhhcHHHHHHHHHhCCCcCcccCccccCCCCeEEEeecCCCCcchHHHHHHH
Confidence 8 8899999999999999999999999999999999999999995544599999999999999999999999999999
Q ss_pred HHHHHHHHHhh-cCcEEEecCCeEEEEeC---CEEEEEeCHHHHHHHHHhCCCCCCccceeeeccCCCChhhHHhhhcCc
Q 010553 383 FFYRYQKTLFD-EGCIYVGVPPLYKVERG---KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNP 458 (507)
Q Consensus 383 ff~~~~p~Li~-~G~v~~~~tPl~kv~~g---k~~~~~y~~~e~~~~~~~~~~~~~~~i~ryKGLGe~~~~~l~et~~~p 458 (507)
|||||||+||+ +||||+|+||||||+.| |+.+|||+++|+++|+++.....+|+||||||||||||+|||||||||
T Consensus 541 fF~r~~p~Lie~~G~vyia~pPLykv~~~k~~k~~~~~y~~~e~e~~~~~~~~~~~~~iqryKGLGEm~~~ql~Ett~~~ 620 (1177)
T 4gfh_A 541 FLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNL 620 (1177)
T ss_dssp HHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESSHHHHHHHHHHTGGGSCEEEEEC----CCCHHHHHHHHHTC
T ss_pred HHHHhChhhEeeCCEEEEEecceEEEEEecCCcceEEEechHHHHHHHHHhcCCCCcceeecccCCcccHHHHHHHHhCc
Confidence 99999999999 99999999999999865 457899999999999988765568999999999999999999988887
Q ss_pred Ccce--EEeeccccHHHHHHHHHHhcCCCchHHHHHHHhccccCCcc
Q 010553 459 EQRM--LKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 503 (507)
Q Consensus 459 ~~r~--l~~v~~~d~~~~~~~f~~lmg~~~~~Rk~~i~~~~~~~~~~ 503 (507)
++|+ +.+++++|++.+ ..+|||+++++||+||++|++...+|
T Consensus 621 d~~~~~~~~v~~~d~~~~---d~~f~~~~~~~RkewI~~~~~~~~~d 664 (1177)
T 4gfh_A 621 DRHLKIFHSLQGNDKDYI---DLAFSKKKADDRKEWLRQYEPGTVLD 664 (1177)
T ss_dssp TTTEEEEECCCTTTHHHH---HHHHCGGGHHHHHHHHHHCCTTCCCC
T ss_pred ccceEEEEEcccccHHHH---HHHHhccchhhHHHHHHhcCcccccc
Confidence 7655 445666666544 45567999999999999999876544
No 2
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=100.00 E-value=2.6e-101 Score=744.07 Aligned_cols=237 Identities=50% Similarity=0.854 Sum_probs=212.4
Q ss_pred HHhhccccccCCCCCCCCCCCCCCCCCceEEEeecCCCCCcccccCCCCceEeeccCCccccccccCHHHHhhCcchHHH
Q 010553 261 LVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 340 (507)
Q Consensus 261 ~~~~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~gsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~l 340 (507)
..|||++++.+.|||||+||++++|++|||||||||||||||+|||||+||||||||||||||++++.++|++|+||++|
T Consensus 21 ~~rrk~~~~~~~lpgKLaDc~~kd~~~~eLflvEGDSAgGsakqgRdr~~QailPLRGKiLNv~ka~~~ki~~N~Ei~~i 100 (268)
T 3k9f_C 21 DKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTM 100 (268)
T ss_dssp ---------------CCBCCSSCCTTSCEEEEEECHHHHHHHHHSSCTTTEEEEEECSSCCCTTSSCHHHHHTCHHHHHH
T ss_pred hhhhhhccccCCCCccccCcccCCCCceeEEEeeeecccccccccCccccccccccCCcchhhhcCCHHHHhhCHHHHHH
Confidence 34667788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccCCcCcccccccceEEEeecCCCCChhhHHHHHHHHHHHHHHHhhcCcEEEecCCeEEEEeCCE----EEEE
Q 010553 341 IRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ----VQYC 416 (507)
Q Consensus 341 i~alG~~~~~~~~~~~~LRY~kiiImtDaD~DG~HI~~Llltff~~~~p~Li~~G~v~~~~tPl~kv~~gk~----~~~~ 416 (507)
++|||||+ +.+||+++||||||||||||||||+||++|||||||||||+||++||||+|+||||||++||+ +.||
T Consensus 101 i~alG~g~-g~~~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPLykv~~gk~~~~~~~Y~ 179 (268)
T 3k9f_C 101 IYTIGAGV-GADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 179 (268)
T ss_dssp HHHHCSCC---CCCCC-CCCSEEEEECCSSHHHHHHHHHHHHHHHHTSHHHHHTTCEEEECCCSEEEEC-CGGGCCEEEE
T ss_pred HHHhCCCC-CccccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhCCcEEEecCCeEEEEeCCCcccceEEE
Confidence 99999999 578999999999999999999999999999999999999999999999999999999999874 4799
Q ss_pred eCHHHHHHHHHhCCCCCCccceeeeccCCCChhhHHhhhcCcCcceEEeeccccHHHHHHHHHHhcCCCchHHHHHHHhc
Q 010553 417 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNA 496 (507)
Q Consensus 417 y~~~e~~~~~~~~~~~~~~~i~ryKGLGe~~~~~l~et~~~p~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~Rk~~i~~~ 496 (507)
||++|+++|++++. ++|+||||||||||+|+|||||||||++|+|.+|+++|+.+++++|++|||++|++||+||++|
T Consensus 180 y~e~E~~~~~~~~~--~~~~IqryKGLGEm~~~qlweTtmdP~~R~L~~Vti~da~~a~~~f~~LMG~~v~~Rk~fI~~~ 257 (268)
T 3k9f_C 180 WTDGELEELRKQFG--KGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 257 (268)
T ss_dssp CSHHHHHHHHHHSC--TTCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECSCSHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred eCHHHHHHHHHhcC--CCCCceEecCCCccCHHHHHHHhcCccceeEEEEEcCcHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 99999999999863 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 010553 497 ANLV 500 (507)
Q Consensus 497 ~~~~ 500 (507)
+.++
T Consensus 258 a~~~ 261 (268)
T 3k9f_C 258 VKFT 261 (268)
T ss_dssp CCCC
T ss_pred hHHh
Confidence 9875
No 3
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.7e-99 Score=770.90 Aligned_cols=249 Identities=51% Similarity=0.871 Sum_probs=181.8
Q ss_pred HHHHHHhhccccccCCCCCCCCCCCCCCCCCceEEEeecCCCCCcccccCCCCceEeeccCCccccccccCHHHHhhCcc
Q 010553 257 RARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEE 336 (507)
Q Consensus 257 kar~~~~~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~gsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~E 336 (507)
+||+++|||+.+....|||||+||+++||++|||||||||||||||||||||+||||||||||||||++++.++|++|+|
T Consensus 3 ~are~~rrk~~~~~~~lpgKLaDc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~n~E 82 (420)
T 3nuh_B 3 AAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 82 (420)
T ss_dssp ---------------CCBTTBBCCSCCSTTSCEEEEEEHHHHHHHHHHHSCTTTEEEEEECC-------------CCCHH
T ss_pred HHHHHHHhhcccccCCCCccccccccCCccceeEEEEeccccccccccccccccccccccCCcchhHhhccHHHHhcCHH
Confidence 56788899998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCccCCcCcccccccceEEEeecCCCCChhhHHHHHHHHHHHHHHHhhcCcEEEecCCeEEEEeCCEEEEE
Q 010553 337 IQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 416 (507)
Q Consensus 337 i~~li~alG~~~~~~~~~~~~LRY~kiiImtDaD~DG~HI~~Llltff~~~~p~Li~~G~v~~~~tPl~kv~~gk~~~~~ 416 (507)
|++||+|||||++.++||+++||||||||||||||||+||++|||||||||||+||++||||+|+||||||++||++.||
T Consensus 83 i~~ii~alG~~~g~~~~~~~~LRY~kIiIMTDaDvDGsHIr~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~y~ 162 (420)
T 3nuh_B 83 VATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYI 162 (420)
T ss_dssp HHHHHHHHC-------------CCSEEEECCCSSTTTTHHHHHHHHHHHHHCHHHHHTTCEEEECCCSEEEEETTEEEEE
T ss_pred HHHHHHHhCCCCCcCCCChhhcCcCeEEEecCCCCCcccchhHHHHHHHHHhHHHHHCCcEEEecCceEEEEcCCeEEEe
Confidence 99999999999965689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHHHHhCC------------------------------------------------------------------
Q 010553 417 YDDAELKKVKSSFP------------------------------------------------------------------ 430 (507)
Q Consensus 417 y~~~e~~~~~~~~~------------------------------------------------------------------ 430 (507)
||++|+++|+.+..
T Consensus 163 ~~~~e~~~~~~~~al~~~~l~~~~~~~~~~g~~L~~l~~~~~~~~~~i~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 242 (420)
T 3nuh_B 163 KDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTV 242 (420)
T ss_dssp CCHHHHHHHHHHHHHTTEEEEESSSCSEEEHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHSCCCCHHHHHCHHHH
T ss_pred CCHHHHHHHHhhccccCeEEEeCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhcccCChhhhcCHHHH
Confidence 99999999976500
Q ss_pred --------------------------------------------------------------------------------
Q 010553 431 -------------------------------------------------------------------------------- 430 (507)
Q Consensus 431 -------------------------------------------------------------------------------- 430 (507)
T Consensus 243 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~~~~~~l~~~~~~s~ey~~l~~~~~~l~~~~~~~~~ 322 (420)
T 3nuh_B 243 TRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAF 322 (420)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEEECC---CEEEEEEEECSSSEEEEECCHHHHHSHHHHHHHHHHHHHHHTTTTSEE
T ss_pred HHHHHHHHHHhhhccccccceEEEEeecccCcceeEEEEEEecCcceEEEEChHHhcCHHHHHHHHHHHHHHHhhcCCcE
Confidence
Q ss_pred -----------------------CCCCccceeeeccCCCChhhHHhhhcCcCcceEEeeccccHHHHHHHHHHhcCCCch
Q 010553 431 -----------------------SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVD 487 (507)
Q Consensus 431 -----------------------~~~~~~i~ryKGLGe~~~~~l~et~~~p~~r~l~~v~~~d~~~~~~~f~~lmg~~~~ 487 (507)
+.++..||||||||||||+|||||||||++|+|.||+|+|+.+|+++|++||||.|+
T Consensus 323 i~~~~~~~~v~~~~~~~~~l~~~~~kG~~IQRYKGLGEMNpeQLWETTMdP~~R~LLqV~IeDa~~AD~iFt~LMGD~VE 402 (420)
T 3nuh_B 323 IERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVE 402 (420)
T ss_dssp EEESSCEEEESSHHHHHHHHHHHHTTTCEEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHCSCC--
T ss_pred EEeCCcceecCCHHHHHHHHHHHhhccceeeeeccCCCCChhhhhhcccCcccceEEEEEehhHHHHHHHHHHhcCCCch
Confidence 135677999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCccCCCC
Q 010553 488 TRKELIQNAANLVNLDHLDI 507 (507)
Q Consensus 488 ~Rk~~i~~~~~~~~~~~~d~ 507 (507)
|||+||++||.. +.||||
T Consensus 403 PRR~FIe~NAL~--V~nLDi 420 (420)
T 3nuh_B 403 PRRAFIEENALK--AANIDI 420 (420)
T ss_dssp --------------------
T ss_pred HhHHHHHhhhcc--cccCCC
Confidence 999999999995 578986
No 4
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A*
Probab=100.00 E-value=7.1e-97 Score=706.18 Aligned_cols=228 Identities=47% Similarity=0.818 Sum_probs=176.5
Q ss_pred CCCCCCCCCCCceEEEeecCCCCCcccccCCCCceEeeccCCccccccccCHHHHhhCcchHHHHHHhcCCccCCcCccc
Q 010553 277 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 356 (507)
Q Consensus 277 L~Dc~~~~~~~~eL~lvEGDSA~gsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~~~~~~~~~~~ 356 (507)
..|-.++||++|||||||||||||||+|||||+||||||||||||||++++.++|++|+||++||+|||||+ +.+||++
T Consensus 9 ~~~~~~~d~~~~eLflvEGDSAgGsak~gRdr~~QailPLRGKiLNv~ka~~~ki~~N~Ei~~ii~alG~~~-g~~~d~~ 87 (242)
T 3m4i_A 9 VDDDDKTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIG 87 (242)
T ss_dssp ------CCGGGEEEEEEESSSCC---------CEEEEEEECC--------CHHHHTTCHHHHHHHHHHCSCS-GGGCCGG
T ss_pred CCCccccChhheEEEEEecccccchhhhccccccccccccCCcchhhhhcCHHHHhhCHHHHHHHHHhCCCc-Ccccccc
Confidence 345568999999999999999999999999999999999999999999999999999999999999999999 5689999
Q ss_pred ccccceEEEeecCCCCChhhHHHHHHHHHHHHHHHhhcCcEEEecCCeEEEEeCC-EEEEEeCHHHHHHHHHhCCC-CCC
Q 010553 357 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK-QVQYCYDDAELKKVKSSFPS-NAL 434 (507)
Q Consensus 357 ~LRY~kiiImtDaD~DG~HI~~Llltff~~~~p~Li~~G~v~~~~tPl~kv~~gk-~~~~~y~~~e~~~~~~~~~~-~~~ 434 (507)
+||||||||||||||||+||++|||||||||||+||++||||+|+||||+|++|| ++.||||++|+++|++++.. .++
T Consensus 88 ~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~~y~ys~~E~~~~~~~~~~~~~~ 167 (242)
T 3m4i_A 88 KLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKK 167 (242)
T ss_dssp GCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCTHHHHTTCEEEECCCSEEECCTTSCCEEESSHHHHHHHHHHHHHHTCC
T ss_pred ccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhcCcEEEecCceEEEEeCCccEEEeCCHHHHHHHHHHhhhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999 89999999999999987531 233
Q ss_pred c----cceeeeccCCCChhhHHhhhcCcCcceEEeeccccHHHHHHHHHHhcCCCchHHHHHHHhccccCCccCCCC
Q 010553 435 Y----SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507 (507)
Q Consensus 435 ~----~i~ryKGLGe~~~~~l~et~~~p~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~Rk~~i~~~~~~~~~~~~d~ 507 (507)
| +||||||||||+|+|||||||||++|+|.+|+++|+..++++|++|||++|++||+||++|+.+ +++|||
T Consensus 168 ~~k~~~IqryKGLGEm~~~ql~ettmdp~~R~L~~V~i~d~~~a~~~f~~LMG~~v~~Rk~~I~~~~~~--~~~ld~ 242 (242)
T 3m4i_A 168 INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKD--VRFLDV 242 (242)
T ss_dssp CCTTTSEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHHHC-----------------------
T ss_pred cccccccceEcCcCCCCHHHHHHHhcCccceeeEEeccCcHHHHHHHHHHHhCCCcHHHHHHHHHHhhh--hhhccC
Confidence 5 9999999999999999999999999999999999999999999999999999999999999986 467875
No 5
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=100.00 E-value=1.1e-90 Score=762.09 Aligned_cols=255 Identities=43% Similarity=0.698 Sum_probs=225.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCceEEEeecCCCCCcccccCCCCceEeeccCCccc
Q 010553 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKIL 321 (507)
Q Consensus 242 ~~~~~~~~k~r~aakkar~~~~~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~gsak~gRdr~~qailPLrGKiL 321 (507)
+++++.++++|++++++ .+||+.++...|||||+||++++|++|||||||||||||||||||||+||||||||||||
T Consensus 1 ~~k~~~~~~ar~~~~~~---~~rk~~~~~~~lpgKL~dc~~~~~~~~eL~lvEGDSAgGsak~gRdr~~qailPLRGKiL 77 (767)
T 2xkj_E 1 MEMAISKAGRRLKAAKK---VERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKIL 77 (767)
T ss_dssp ---------------------CCCCCSSSCSSTTTCBCCCC-CGGGCEEEEEEHHHHHHHHHHHSCTTTEEEEEESSCCC
T ss_pred ChHHHHHHHHHHHHHHH---hhhccccccccCcHhhHhcccCCCcceEEEEeeCCCCcchhhhcCCcccccccccccchh
Confidence 35778888888755443 346777888899999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHHHhhCcchHHHHHHhcCCccCCcCcccccccceEEEeecCCCCChhhHHHHHHHHHHHHHHHhhcCcEEEec
Q 010553 322 NVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 401 (507)
Q Consensus 322 Nv~ka~~~ki~~N~Ei~~li~alG~~~~~~~~~~~~LRY~kiiImtDaD~DG~HI~~Llltff~~~~p~Li~~G~v~~~~ 401 (507)
|||+|+.++|++|+||++|++|||||++. .|+++||||||||||||||||+||+||||||||||||+||++||||+|+
T Consensus 78 Nv~ka~~~ki~~n~Ei~~i~~alG~~~g~--~~~~~lRY~kiiImtDaDvDG~HI~~Llltff~r~~p~Li~~G~vy~a~ 155 (767)
T 2xkj_E 78 NTWEVSSDEVLASQEVHDIAIAIGVDPGS--DDLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAM 155 (767)
T ss_dssp CCTTSCTTTGGGSHHHHHHHHHHTCCTTC--CCCTTCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEEEC
T ss_pred hhhcCCHHHHhccHHHHHHHHHhCCCccc--ccccccccceEEEeecCCCCcchhhHHHHHHHHHHhHHHHhcCcEEEec
Confidence 99999999999999999999999999953 3999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCEEEEEeCHHHHHHHHHhCCCCCCccceeeeccCCCChhhHHhhhcCcCcceEEeeccccHHHHHHHHHHh
Q 010553 402 PPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481 (507)
Q Consensus 402 tPl~kv~~gk~~~~~y~~~e~~~~~~~~~~~~~~~i~ryKGLGe~~~~~l~et~~~p~~r~l~~v~~~d~~~~~~~f~~l 481 (507)
||||||++||++.||||++|+++|++++++.++|+||||||||||||+|||||||||++|+|.+|+++|+..++++|++|
T Consensus 156 pPl~kv~~gk~~~y~~~~~e~~~~~~~~~~~~~~~IqRYKGLGEmnp~ql~ETtmdp~~R~L~~v~i~da~~ad~~f~~l 235 (767)
T 2xkj_E 156 PPLFRIDIGKDVHYALDDEELETILKNVKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDAHLTAGLLDKL 235 (767)
T ss_dssp CCSEEEEETTEEEEESSHHHHHHHHHTCCSSCCCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECCSHHHHHHHHHHH
T ss_pred CCEEEEEECCEEEeeeCHHHHHHHHHHhhcCCCCceecccCCCCCCHHHHhHhhcCccceEEEEEEcccHHHHHHHHHHH
Confidence 99999999999999999999999999986556799999999999999999999999999999999999999999999999
Q ss_pred cCC-CchHHHHHHHhccccCC
Q 010553 482 MGA-RVDTRKELIQNAANLVN 501 (507)
Q Consensus 482 mg~-~~~~Rk~~i~~~~~~~~ 501 (507)
||+ +|++||+||++|+..++
T Consensus 236 mgkk~ve~RKewI~~~~~~~~ 256 (767)
T 2xkj_E 236 LAKKRAADRKQWLEQKGNLAD 256 (767)
T ss_dssp HCGGGHHHHHHHHHHHGGGCC
T ss_pred hCCCCchHHHHHHHhcCcccc
Confidence 998 69999999999987543
No 6
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=100.00 E-value=1.8e-80 Score=674.45 Aligned_cols=229 Identities=28% Similarity=0.453 Sum_probs=212.3
Q ss_pred CCCCCCCCCCC---CCCCCCceEEEeecCCCCCcccccCC---CCceEeeccCCccccccccCHHHHhhCcchHHHHHHh
Q 010553 271 SSLPGKLADCS---STTPEESEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 344 (507)
Q Consensus 271 ~~lpgKL~Dc~---~~~~~~~eL~lvEGDSA~gsak~gRd---r~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~al 344 (507)
.++| ||+||+ +++|++|||||||||||||||++||+ |+||||||||||||||++|+.++|++|+||++|++||
T Consensus 4 ~g~~-KL~Dc~~a~~k~~~~~el~lvEGDSAggsak~gr~~~gR~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~i~~al 82 (757)
T 3l4j_A 4 TNYP-KLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIM 82 (757)
T ss_dssp CSCS-SCBCCTTSSSTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHHT
T ss_pred CCCc-CccccccccCCCccceEEEEeecccchhhHhhcccccCcccccccccCCcccchhhccHHHhhcCHHHHHHHHHh
Confidence 3577 999996 78999999999999999999999884 8899999999999999999999999999999999999
Q ss_pred cCCccCCcCcccccccceEEEeecCCCCChhhHHHHHHHHHHHHHHHhh-cCcEEEecCCeEEEE---eCCEEEEEeCHH
Q 010553 345 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKVE---RGKQVQYCYDDA 420 (507)
Q Consensus 345 G~~~~~~~~~~~~LRY~kiiImtDaD~DG~HI~~Llltff~~~~p~Li~-~G~v~~~~tPl~kv~---~gk~~~~~y~~~ 420 (507)
|||++.++||+++||||||||||||||||+||+||||||||||||+||+ +||||+|+||||+|+ +||++.||||++
T Consensus 83 G~~~g~~~~~~~~lRY~kiiImtDaD~DG~HI~~Llltff~r~~p~Li~~~G~vy~~~~Pl~kv~~~~~gk~~~~~ys~~ 162 (757)
T 3l4j_A 83 GLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMP 162 (757)
T ss_dssp TCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESSHH
T ss_pred CCCcCcccccccccCcceEEEecCcccccccchhHHHHHHHHHhHHHhccCCEEEEecCceEEEeeccCCcceEEecCHH
Confidence 9999655579999999999999999999999999999999999999999 899999999999999 789999999999
Q ss_pred HHHHHHHhCCCCCCccceeeeccCCCChhhHHhhh--cCcCcceEEeeccccHHHHHHHHHHhcCCCchHHHHHHHhccc
Q 010553 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETT--LNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAAN 498 (507)
Q Consensus 421 e~~~~~~~~~~~~~~~i~ryKGLGe~~~~~l~et~--~~p~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~Rk~~i~~~~~ 498 (507)
|+++|+++++..++|+||||||||||+|+|+|||| |||++|.|.+++++|++.++++|+. ++|++||+||++|++
T Consensus 163 E~~~~~~~~~~~~~~~iqryKGLGem~~~ql~e~f~~m~~~~r~l~~~~~~d~~~~d~~f~~---~~~~~Rk~wi~~~~~ 239 (757)
T 3l4j_A 163 DYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSK---KKADDRKEWLRQYEP 239 (757)
T ss_dssp HHHHHHHHTGGGSCEEEEECCTTTTSCHHHHHHHHHTCTTTEEEECCCCTTHHHHHHHHHCT---TCHHHHHHHHHHCCT
T ss_pred HHHHHHHHhccCCCCccceecCcCcCCHHHHHHHhcCcCceeEEEEecCccHHHHHHHHhCc---CcchHHHHHHHhcCC
Confidence 99999998754567999999999999999999975 6699999999999998877777773 789999999999999
Q ss_pred cCCcc
Q 010553 499 LVNLD 503 (507)
Q Consensus 499 ~~~~~ 503 (507)
.+.+|
T Consensus 240 ~~~ld 244 (757)
T 3l4j_A 240 GTVLD 244 (757)
T ss_dssp TCCCC
T ss_pred ccccc
Confidence 87655
No 7
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=100.00 E-value=1e-79 Score=669.09 Aligned_cols=221 Identities=34% Similarity=0.531 Sum_probs=157.5
Q ss_pred CCCCCCCCCC---CCCCCCCceEEEeecCCCC-----CcccccCCCCceEeeccCCccccccccCHHHHhhCcchHHHHH
Q 010553 271 SSLPGKLADC---SSTTPEESEIFIVEGDSAG-----GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 342 (507)
Q Consensus 271 ~~lpgKL~Dc---~~~~~~~~eL~lvEGDSA~-----gsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~ 342 (507)
.++| ||+|| +++||++|||||||||||| |||+||||| |||||||||||||++|+.++|++|+||++|++
T Consensus 34 ~~lp-KL~Dan~a~~kd~~~~eLflvEGDSAg~~a~sGsak~gRdr--~ailPLRGKiLNv~ka~~~ki~~N~Ei~~ii~ 110 (803)
T 3qx3_A 34 KGIP-KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIMENAEINNIIK 110 (803)
T ss_dssp CCCT-TCBCCTTTTSTTGGGCEEEEEEHHHHHHHHHTTSTTGGGTT--EEEEEECSSCCCCTTCCHHHHHHCHHHHHHHH
T ss_pred CCCC-ccccccccccCChhheEEEEecCCcchhhhhcccceecccc--cccccccCcchhhhhccHHHHhcCHHHHHHHH
Confidence 4577 99999 5899999999999999999 999999998 89999999999999999999999999999999
Q ss_pred HhcCCccCC---cCcccccccceEEEeecCCCCChhhHHHHHHHHHHHHHHHhhcCcEEEecCCeEEEEeCCEEEEEeCH
Q 010553 343 ALGLGVKGE---DFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 419 (507)
Q Consensus 343 alG~~~~~~---~~~~~~LRY~kiiImtDaD~DG~HI~~Llltff~~~~p~Li~~G~v~~~~tPl~kv~~gk~~~~~y~~ 419 (507)
|||||++.+ .+|+++||||||||||||||||+||+||||||||||||+||+.||||+|+||||||++||++.||||+
T Consensus 111 alG~g~g~~~~~~~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~~~ys~ 190 (803)
T 3qx3_A 111 IVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSI 190 (803)
T ss_dssp HHTCCTTCCCCSTTGGGGCSCSEEEEECCSSHHHHHHHHHHHHHHHHHCGGGGGTTCEEEECC-----------------
T ss_pred HhCCCcCccccccccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhcCeEEEecCceEEEecCCeeEEEecH
Confidence 999999543 25899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCccceeeeccCCCChhhHHhhhcCcC-cceEEeecc-ccHHHHHHHHHHhcCCCchHHHHHHHhcc
Q 010553 420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPE-QRMLKQLVI-EDAAEANVVFSSLMGARVDTRKELIQNAA 497 (507)
Q Consensus 420 ~e~~~~~~~~~~~~~~~i~ryKGLGe~~~~~l~et~~~p~-~r~l~~v~~-~d~~~~~~~f~~lmg~~~~~Rk~~i~~~~ 497 (507)
+|+++|++++...++|+||||||||||+|+|+|||||||. +|.+.+++. +|.+.++++|+ |+++++||+||++|+
T Consensus 191 ~e~~~~~~~~~~~~~~~iqryKGLGem~~~el~ettmd~~~~r~~~~~~~~~d~~~~d~~F~---k~~~~~RK~wi~~~~ 267 (803)
T 3qx3_A 191 PEFDEWKKHIENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFS---KKKIDDRKEWLTNFM 267 (803)
T ss_dssp -----------------------------CHHHHHHHTHHHHEEEEECCSHHHHHHHHHHHC---GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcccccccccCCCCHHHHHHHhcCcccceEEEEeCCcchHHHHHHHhc---CCChHHHHHHHHHhh
Confidence 9999999887555679999999999999999999999986 555656652 44444555554 578999999999998
No 8
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=100.00 E-value=1.7e-76 Score=642.80 Aligned_cols=197 Identities=60% Similarity=0.988 Sum_probs=185.9
Q ss_pred cCCCCCCCCCCCCCCCCCceEEEeecCCCCCcccccCCCCceEeeccCCccccccccCHHHHhhCcchHHHHHHhcCCcc
Q 010553 270 SSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK 349 (507)
Q Consensus 270 ~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~gsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~~~~ 349 (507)
...|||||+||++++|++|||||||||||||||+|||||+|||||||||||||||+|+.++|++|+||++|++|||||+
T Consensus 3 ~~~lpgkl~dc~~~~~~~~eL~lvEGDSA~Gsak~gRd~~~qai~PLrGKiLNv~~a~~~~i~~n~Ei~~i~~alG~~~- 81 (692)
T 2xcs_B 3 VASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGI- 81 (692)
T ss_dssp ------CCBCCSCCCTTTCEEEEESSHHHHHHHHHHSCTTTEEEEECCSSCCCTTTSCHHHHHTCHHHHHHHHHHCSCC-
T ss_pred CCCCCchhhcCCCCCcccceEEEecCCcccCcccccccccccccccccCcccchhhCcHHHhhccHHHHHHHHHhCCCc-
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccccccceEEEeecCCCCChhhHHHHHHHHHHHHHHHhhcCcEEEecCCeEEEEeCCEEEEEeCHHHHHHHHHhC
Q 010553 350 GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSF 429 (507)
Q Consensus 350 ~~~~~~~~LRY~kiiImtDaD~DG~HI~~Llltff~~~~p~Li~~G~v~~~~tPl~kv~~gk~~~~~y~~~e~~~~~~~~ 429 (507)
+.+||+++||||||||||||||||+||+||||||||||||+||++||||+++||+
T Consensus 82 g~~~~~~~lrY~kiiImTDaD~DGsHI~~Llltff~r~~~~Li~~g~vyia~pP~------------------------- 136 (692)
T 2xcs_B 82 GGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPT------------------------- 136 (692)
T ss_dssp GGGCCGGGCSCSEEEECCCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEECCCCS-------------------------
T ss_pred CccccccccccceEEEeecCCCCcchhhhHHHHHHHHhChHHhhcCeeEEecCch-------------------------
Confidence 4679999999999999999999999999999999999999999999999999994
Q ss_pred CCCCCccceeeeccCCCChhhHHhhhcCcCcceEEeeccccHHHHHHHHHHhcCCCchHHHHHHHhccccCC
Q 010553 430 PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVN 501 (507)
Q Consensus 430 ~~~~~~~i~ryKGLGe~~~~~l~et~~~p~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~Rk~~i~~~~~~~~ 501 (507)
||||||||+|+|+|||||||++|++.+|+++|+..++++|++|||+++++||+||++|+..++
T Consensus 137 ---------~yKGLGem~~~ql~et~m~p~~r~l~~v~~~d~~~~~~~~~~lmg~~~~~Rk~~i~~~~~~~~ 199 (692)
T 2xcs_B 137 ---------GYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYAN 199 (692)
T ss_dssp ---------SCSSGGGSCHHHHHHHHTCTTTCCCEEEECCCHHHHHHHHHHHHSSCHHHHHHHHHHHCCCCC
T ss_pred ---------hhcccccCCHHHHHHHhcCccceeEEEEecCchhhHHHHHHHHcCCCchHHHHHHHhcCCccc
Confidence 799999999999999999999999999999999889999999999999999999999998643
No 9
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=100.00 E-value=2.6e-65 Score=533.20 Aligned_cols=252 Identities=25% Similarity=0.441 Sum_probs=223.6
Q ss_pred CEEEEEecCCCCCCcceeeecCCCCC--CCCCeEEEEEeCccccccccCCCHHHHHHHHHHHhccCCCcEEEEeecCCCC
Q 010553 1 MEYHQKYSRGKPVTTLTCHVLPVDSK--DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDP 78 (507)
Q Consensus 1 k~y~q~F~~G~~~~~l~~~~~~~~~~--~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~Ln~Gl~I~l~der~~~ 78 (507)
+.|+|+|++|+++.+++++ +++ .++||+|+||||+++|++ ..|++++|.+||+++|||||||+|.|+|+|.+
T Consensus 154 k~~~q~f~~G~~~~~l~~i----g~~~~~~~GT~V~F~PD~~iF~~-~~f~~~~l~~rlrelA~Ln~Gv~I~l~der~~- 227 (408)
T 3lnu_A 154 SEHRMEFRDGNAASKLEVV----GTVGKKNTGTRLRFWADPKYFDT-PKFNVRALRHLLRAKAVLCPGLTVKLHDEATG- 227 (408)
T ss_dssp EEEEEEEETTEECSCCEEE----EECCTTCCEEEEEEEECGGGSSC-SCCCHHHHHHHHHHHHHHSTTCEEEEEETTTC-
T ss_pred EEEEEEECCCEECCCceEe----ccCcCCCCCcEEEEEECHHHhCC-CCcCHHHHHHHHHHHHhhcCCCEEEEEeccCC-
Confidence 4699999999999999877 333 579999999999999974 57999999999999999999999999999964
Q ss_pred CCCcceeEecCCCHHHHHHHHhcCCCCCCceeEEEEeccc-eEEEEeeeecCCCCCceeeeeeCceecCCCCcchhhHHH
Q 010553 79 EKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 157 (507)
Q Consensus 79 ~~~~~~~f~~~~Gl~~yv~~l~~~~~~~~~~i~~~~~~~~-~~veval~~s~~~~~~~~~SFvN~I~T~~GGTHv~g~~~ 157 (507)
..++|+|++||++||++++.+++++++.+++.++.++ +.|||||||+ ++|+++++||||||+|++||||++||++
T Consensus 228 ---~~~~f~yegGi~~yv~~l~~~k~~~~~~~~~~~~~~~~~~ve~Al~~~-~~~~e~~~SFvN~I~T~~GGTH~~gfr~ 303 (408)
T 3lnu_A 228 ---EQDSWYFENGLRDYLKGEMAEHEMLPADLFVGSLKKDTEIVDWAAGWV-PEGELVQESYVNLIPTAQHGTHVNGLRS 303 (408)
T ss_dssp ---CEEEEECSSSHHHHHHHHTTTSCCEEEEEEEEEEECSSCEEEEEEEEC-SSSCCCEEEEETTEECTTCBHHHHHHHH
T ss_pred ---ceeEEEcCchHHHHHHHHhcCCCcCCCCCeEeeEecCceeEEEEEEEc-CCCCeEEEEEeCCcCCCCCCcHHHHHHH
Confidence 4679999999999999999988877765555666666 8999999999 6799999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCcCCCCCHHhHhcccEEEEEEeecCCCCCCccccccCChhhHhhhhHhhHHHHHHHHhhChHH
Q 010553 158 SLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 237 (507)
Q Consensus 158 al~~~in~~~kk~~~~k~~~~~i~~~diregL~~vvsv~i~nP~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~~ 237 (507)
||+++||+|+++.+++|++ .+++++||||||++||||+|+||+|+||||++|+|++++.+|++++.+.|..||++||++
T Consensus 304 altr~in~y~~~~~l~kk~-~~l~~~DiregL~aviSvkv~~PqFegQTK~kL~n~ev~~~V~~~v~~~l~~~l~enp~~ 382 (408)
T 3lnu_A 304 GLTDALREFCDFRNLLPRG-VKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFSLYLNQNVEI 382 (408)
T ss_dssp HHHHHHHHHHHHTTCCCTT-CCCCHHHHHTTEEEEEEEECSSCCEESTTSCEECCHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhCcccCC-CCCCHHHHhhCeEEEEEEEcCCCcccCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHH
Confidence 9999999999999988875 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010553 238 LDSILSKSLSALKAALAAKRARDLVRQK 265 (507)
Q Consensus 238 ~~~I~~~~~~~~k~r~aakkar~~~~~k 265 (507)
|+.|++|++.+++||+ ||||+++|||
T Consensus 383 ak~i~~k~i~aa~aR~--rkare~~rrK 408 (408)
T 3lnu_A 383 GEKIAQIAIDRASARL--KTEKQIVRKK 408 (408)
T ss_dssp HHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHhccC
Confidence 9999999999999995 8999998875
No 10
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=1.5e-61 Score=505.76 Aligned_cols=252 Identities=36% Similarity=0.700 Sum_probs=234.7
Q ss_pred CEEEEEecCCCCCCcceeeecCCCCCCCCCeEEEEEeCccccccccCCCHHHHHHHHHHHhccCCCcEEEEeecCCCCCC
Q 010553 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEK 80 (507)
Q Consensus 1 k~y~q~F~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~Ln~Gl~I~l~der~~~~~ 80 (507)
+.|+|+|++|+++.+++++ +++.++||+|+|+||+++|++...|+++.|.+||+++|||||||+|.|+|++.+
T Consensus 138 ~~~~~~~~~G~~~~~l~~~----~~~~~~GT~V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~--- 210 (391)
T 1ei1_A 138 KIHRQIYEHGVPQAPLAVT----GETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDG--- 210 (391)
T ss_dssp EEEEEEEETTEESSCCEEE----EECSCCEEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTC---
T ss_pred cEEEEEEcCCcccccceec----cCcCCCccEEEEEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEEcCCCc---
Confidence 3699999999999888776 344679999999999999964157999999999999999999999999999853
Q ss_pred CcceeEecCCCHHHHHHHHhcCCCCCC-ceeEEEEeccceEEEEeeeecCCCCCceeeeeeCceecCCCCcchhhHHHHH
Q 010553 81 NQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL 159 (507)
Q Consensus 81 ~~~~~f~~~~Gl~~yv~~l~~~~~~~~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFvN~I~T~~GGTHv~g~~~al 159 (507)
..++|+|++||.+||.+++.++++++ +++++.++.+++.||+|++|+ ++|.++++||||||+|.+||||++||++||
T Consensus 211 -~~~~f~~~gGl~~~v~~l~~~~~~~~~~~i~~~~~~~~i~veva~~~~-~~~~e~~~sFvN~i~t~~GGTH~~gfr~al 288 (391)
T 1ei1_A 211 -KEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAM 288 (391)
T ss_dssp -CEEEECCCSHHHHHHHHHHHTSCBSSSCCEEEEEEETTEEEEEEEEEB-SSCCEEEEEEETTEECTTCBHHHHHHHHHH
T ss_pred -ceEEEEcCchHHHHHHHHcCCCcccccccEEEEEecCCEEEEEEEEcc-CCCCeeEEEEEcceecCCCCcHHHHHHHHH
Confidence 45789999999999999999888887 578888888899999999998 788889999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCcCCCCCHHhHhcccEEEEEEeecCCCCCCccccccCChhhHhhhhHhhHHHHHHHHhhChHHHH
Q 010553 160 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 239 (507)
Q Consensus 160 ~~~in~~~kk~~~~k~~~~~i~~~diregL~~vvsv~i~nP~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~~~~ 239 (507)
+++||+|+++++++|+++.+++++||||||++||||+|+||+|+||||++|+|++++.+|++++.+.|..||++||++++
T Consensus 289 t~~i~~~~~~~~l~k~~~~~~~~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~ 368 (391)
T 1ei1_A 289 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAK 368 (391)
T ss_dssp HHHHHHHHHHTTHHHHHCCCCCHHHHTTTEEEEEEEECSSCCBSSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHhCcccccCCccCHHHHhhccEEEEEEecCCCCcCCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHH
Confidence 99999999999888877789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010553 240 SILSKSLSALKAALAAKRARDL 261 (507)
Q Consensus 240 ~I~~~~~~~~k~r~aakkar~~ 261 (507)
.|+++++.+++||+||||||++
T Consensus 369 ~i~~k~~~aa~ar~aa~kare~ 390 (391)
T 1ei1_A 369 IVVGKIIDAARAREAARRAREM 390 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999975
No 11
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=4.9e-60 Score=494.57 Aligned_cols=249 Identities=22% Similarity=0.394 Sum_probs=228.1
Q ss_pred CEEEEEecCCCCCCcceeeecCCCCCC--CCCeEEEEEeCccccccccCCCHHHHHHHHHHHhccCCCcEEEEeecCCCC
Q 010553 1 MEYHQKYSRGKPVTTLTCHVLPVDSKD--RQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDP 78 (507)
Q Consensus 1 k~y~q~F~~G~~~~~l~~~~~~~~~~~--~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~Ln~Gl~I~l~der~~~ 78 (507)
+.|+|+|++|+++.+++.+ +.+. ++||+|+|+||+++|+ +..|+++.|.+||+++|+|||||+|.|+|++.+
T Consensus 135 ~~~~~~~~~G~~~~~~~~~----g~~~~~~~GT~V~f~Pd~~~F~-~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~- 208 (390)
T 1s16_A 135 QVYNIAFENGEKVQDLQVV----GTCGKRNTGTSVHFWPDETFFD-SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN- 208 (390)
T ss_dssp EEEEEEEETTEEEEEEEEE----EECCTTCCEEEEEEEECGGGSS-CCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTT-
T ss_pred cEEEEEEeCCcccccceec----ccccCCCCceEEEEEECccccC-cccccHHHHHHHHHHHHhcCCCcEEEEEeCCCc-
Confidence 3699999999998888776 3333 7999999999999996 457999999999999999999999999999853
Q ss_pred CCCcceeEecCCCHHHHHHHHhcCCCCCC-ceeEEEEeccceEEEEeeee-cCCCCCceeeeeeCceecCCCCcchhhHH
Q 010553 79 EKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLALQW-CSDAYSDTMLGYANSIRTIDGGTHIEGVK 156 (507)
Q Consensus 79 ~~~~~~~f~~~~Gl~~yv~~l~~~~~~~~-~~i~~~~~~~~~~veval~~-s~~~~~~~~~SFvN~I~T~~GGTHv~g~~ 156 (507)
..+.|+|++||.+||.+++.++++++ +++++.++.+++.||+|++| + ++|+++++||||+|+|.+||||++||+
T Consensus 209 ---~~~~f~~~gGl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~ve~a~~~~~-~~~~~~~~sFvN~i~t~~GGTH~~gfr 284 (390)
T 1s16_A 209 ---TEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLP-EGGELLTESYVNLIPTMQGGTHVNGLR 284 (390)
T ss_dssp ---EEEEECCSSCHHHHHHHHHTTSCCEEEEEEEEEEECSSEEEEEEEEECT-TCCCCCEEEEETTEECTTCBHHHHHHH
T ss_pred ---eeEEEEcCCcHHHHHHHHhCCCcccCCCcEEEEEeeCCEEEEEEEEecc-CCCCceEEEEECCEecCCCCCHHHHHH
Confidence 35789999999999999998877777 57888888889999999999 6 788889999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCcCCCCCHHhHhcccEEEEEEeecCCCCCCccccccCChhhHhhhhHhhHHHHHHHHhhChH
Q 010553 157 ASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 236 (507)
Q Consensus 157 ~al~~~in~~~kk~~~~k~~~~~i~~~diregL~~vvsv~i~nP~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~ 236 (507)
+||+++||+|+++++++| ++.+++++||||||++||||+++||+|+||||++|+|++++.+|++++.+.|..||++||+
T Consensus 285 ~alt~~i~~~~~~~~~~k-~~~~l~~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~ 363 (390)
T 1s16_A 285 QGLLDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQ 363 (390)
T ss_dssp HHHHHHHHHHHHHTTCSC-TTCCCCHHHHHTTEEEEEEEEESSCCBSSTTCCCBCCTHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCcCc-cCCccCHHHHhhccEEEEEeecCCCCccccccchhcChhHHHHHHHHHHHHHHHHHHHChH
Confidence 999999999999999988 7789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010553 237 VLDSILSKSLSALKAALAAKRARD 260 (507)
Q Consensus 237 ~~~~I~~~~~~~~k~r~aakkar~ 260 (507)
+++.|+++++.+++||+||+|||+
T Consensus 364 ~a~~i~~k~~~aa~aR~aa~kare 387 (390)
T 1s16_A 364 AAELLAEMAISSAQRRMRAAKKVV 387 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998
No 12
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=6.7e-59 Score=486.52 Aligned_cols=250 Identities=33% Similarity=0.544 Sum_probs=233.1
Q ss_pred EEEEEecCCCCCCcceeeecCCCCC--CCCCeEEEEEeCccccccccCCCHHHHHHHHHHHhccCCCcEEEEeecCCCCC
Q 010553 2 EYHQKYSRGKPVTTLTCHVLPVDSK--DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPE 79 (507)
Q Consensus 2 ~y~q~F~~G~~~~~l~~~~~~~~~~--~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~Ln~Gl~I~l~der~~~~ 79 (507)
.|.|+|++|+++.+++.+ +++ .++||+|+|+||+++|+ +..|+++.|.+||+++|+|||||+|.|+|++.+
T Consensus 137 ~~~~~~~~G~~~~~~~~~----~~~~~~~~GT~V~f~Pd~~~F~-~~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~~~-- 209 (390)
T 1kij_A 137 HHRIAFSRGEVTEPLRVV----GEAPRGKTGTRVTFKPDPEIFG-NLRFDPSKIRARLREVAYLVAGLKLVFQDRQHG-- 209 (390)
T ss_dssp EEEEEEETTEEEEEEEEE----EECGGGCCEEEEEEEECHHHHT-TCCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGT--
T ss_pred EEEEEEcCCcccccceee----ccccCCCCCcEEEEEEChHHhC-CccccHHHHHHHHHHhcCcCCCcEEEEEeCCCc--
Confidence 699999999988777766 333 57999999999999996 457999999999999999999999999999843
Q ss_pred CCcceeEecCCCHHHHHHHHhcCCCCCC-ceeEEEEeccceEEEEeeeecCCCCCceeeeeeCceecCCCCcchhhHHHH
Q 010553 80 KNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 158 (507)
Q Consensus 80 ~~~~~~f~~~~Gl~~yv~~l~~~~~~~~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFvN~I~T~~GGTHv~g~~~a 158 (507)
..+.|+|++||.+||.+++.++++++ +++++.++.+++.||+|++|+ ++|.++++||||+|+|.+||||++||++|
T Consensus 210 --~~~~f~~~~Gl~~~v~~l~~~~~~~~~~~i~~~~~~~~i~ve~a~~~~-~~~~~~~~sFvN~i~t~~GGTH~~g~~~a 286 (390)
T 1kij_A 210 --KEEVFLDKGGVASFAKALAEGEDLLYEKPFLIRGTHGEVEVEVGFLHT-QGYNAEILTYANMIPTRDGGTHLTAFKSA 286 (390)
T ss_dssp --EEEEECCTTHHHHHHHHHTTTSCBSCSSCEEEEEEETTEEEEEEEEEB-SSSCCEEEEEETTEECTTCBHHHHHHHHH
T ss_pred --ceEEEEcCCcHHHHHHHHhCCCCcCCCCcEEEEeecCCeEEEEEEEec-CCCCceEEEEEcCeeeCCCCchhHHHHHH
Confidence 35789999999999999998887787 578888888899999999998 68889999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCcCCCCCHHhHhcccEEEEEEeecCCCCCCccccccCChhhHhhhhHhhHHHHHHHHhhChHHH
Q 010553 159 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVL 238 (507)
Q Consensus 159 l~~~in~~~kk~~~~k~~~~~i~~~diregL~~vvsv~i~nP~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~~~ 238 (507)
|++++|+|+++++++|+++.+++++|||+||++||||+++||+|+||||++|+|++++.+|++++.+.|..||++||+++
T Consensus 287 lt~~i~~~~~~~~l~k~~~~~l~~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a 366 (390)
T 1kij_A 287 YSRALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEILEENPRIA 366 (390)
T ss_dssp HHHHHHHHHHHTTCCCSSSCCCCTTTTTTTEEEEEEEECSSCCBCSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHhCccccccCCcCHHHHhhhcEEEEEeecCCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHCHHHH
Confidence 99999999999999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010553 239 DSILSKSLSALKAALAAKRARDL 261 (507)
Q Consensus 239 ~~I~~~~~~~~k~r~aakkar~~ 261 (507)
+.|+++++.+++||+||+|||++
T Consensus 367 ~~i~~k~~~~~~aR~aa~kare~ 389 (390)
T 1kij_A 367 KAVYEKALRAAQAREAARKAREL 389 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999985
No 13
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=100.00 E-value=3e-53 Score=440.05 Aligned_cols=232 Identities=28% Similarity=0.516 Sum_probs=209.2
Q ss_pred EEEEEecCCCC------CCcceeeecCCCCCCCCCeEEEEEeCccccccccCCCHHHHHHHHHHHhccCCCcEEEEeecC
Q 010553 2 EYHQKYSRGKP------VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 75 (507)
Q Consensus 2 ~y~q~F~~G~~------~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~Ln~Gl~I~l~der 75 (507)
.|+|+|++|++ +.+++.+ +++.++||+|+|+||+++|+ +..|+++.|.+||+++|+|||||+|.|+|++
T Consensus 122 ~~~~~~~~G~~~~~~~~~~~l~~~----g~~~~~GT~V~f~Pd~~~F~-~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~ 196 (369)
T 3cwv_A 122 QWRVMGEHGHPQGEGAAVTPMEPM----PVSAERGVRVHFVPDATIFE-VLAFDRARLSRRCNELAALAPGLRVSFADLQ 196 (369)
T ss_dssp EEEEEEETTEECTTCEEESSCCCC----SSCCSEEEEEEEEECTTTCS-CCCCCHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred EEEEEEeCCcccccccccCCceEe----cccCCCCCEEEEEECHHHhC-CccccHHHHHHHHHHHcCcCCCcEEEEEeCC
Confidence 69999999998 7777665 44568999999999999996 4579999999999999999999999999998
Q ss_pred CCCCCCcceeEecCCCHHHHHHHHhcCCCCCC-ceeEEEEeccceEEEEeeeecCCCCCceeeeeeCceecCCCCcchhh
Q 010553 76 SDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEG 154 (507)
Q Consensus 76 ~~~~~~~~~~f~~~~Gl~~yv~~l~~~~~~~~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFvN~I~T~~GGTHv~g 154 (507)
.+ ..++|+|++||.+||.+++.++++++ ++++++++.+++.|++|++|+ ++|++.++||||+|+|.+||||++|
T Consensus 197 ~~----~~~~f~~~gGl~~~v~~l~~~~~~~~~~~i~~~~~~~~i~ve~a~~~~-~~~~~~~~sFVN~i~t~~GGTH~~g 271 (369)
T 3cwv_A 197 RG----ERTLWHLPGGVAQWAHVLTEARPQLHPEPVVFDFTWDGLRVQCALQWC-EDEDSTLLSFANAVRTVRHGAHVKG 271 (369)
T ss_dssp TT----EEEEEECTTHHHHHHHHHHTTSCBSSSSCEEEEEEETTEEEEEEEEEB-SSSCCEEEEEETTEECTTCBHHHHH
T ss_pred CC----eeEEEEeCchHHHHHHHHhcCCcccCCCcEEEEEecCCEEEEEEEEec-CCCCeeEEEEECCEEeCCCCCHHHH
Confidence 53 36789999999999999998887777 678888888899999999998 6898999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCcCCCCCHHhHhcccEEEEEEeecCCC--CCCccccccCChhhHhhhhHhhHHHHHHHHh
Q 010553 155 VKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPE--FEGQTKTRLGNPEVRKVVDQSVQEYLTEYLE 232 (507)
Q Consensus 155 ~~~al~~~in~~~kk~~~~k~~~~~i~~~diregL~~vvsv~i~nP~--FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~ 232 (507)
|++||++++++|++ +++.+++++||||||++||||+++||+ |+||||++|+|++++.+|++++.+.|..||+
T Consensus 272 ~~~al~~a~~~~~k------~~~~~l~~~dvregl~avisvk~~~P~~~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~ 345 (369)
T 3cwv_A 272 VTQALRGALAKLSG------ETRGAFPWARVAQGLTAIVAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLR 345 (369)
T ss_dssp HHHHHHHHHHHHHT------CCGGGSCHHHHTTTEEEEEEEECCGGGCCBSSTTCCSBCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh------hcCCCcCHHHHhhccEEEEEeccCCcchhccccccchhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999992 234679999999999999999999999 9999999999999999999999999999999
Q ss_pred hChHHHHHHHHHHHHHH
Q 010553 233 LHPDVLDSILSKSLSAL 249 (507)
Q Consensus 233 ~n~~~~~~I~~~~~~~~ 249 (507)
+||++++.|++|++.++
T Consensus 346 ~np~~a~~i~~k~~~~~ 362 (369)
T 3cwv_A 346 EHPVTPALLARRTSGSE 362 (369)
T ss_dssp TCTTHHHHHTTC-----
T ss_pred HCHHHHHHHHHHHHHhc
Confidence 99999999999998764
No 14
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=100.00 E-value=1.2e-52 Score=438.86 Aligned_cols=229 Identities=17% Similarity=0.232 Sum_probs=181.5
Q ss_pred CEEEEEecCCCCCCcceeeecCCCCC-CCCCeEEEEEeCccccccccCCCHHH---HHHHHHHHhccCCCcEEEEeecCC
Q 010553 1 MEYHQKYSRGKPVTTLTCHVLPVDSK-DRQGTRIRFWPDKQVFTTAIQFDHNT---IAGRIRELAFLNPKLTIALRKEDS 76 (507)
Q Consensus 1 k~y~q~F~~G~~~~~l~~~~~~~~~~-~~~GT~V~F~PD~~iF~~~~~fd~~~---l~~Rl~elA~Ln~Gl~I~l~der~ 76 (507)
+.|+|+|++|+++.+++.+ +++ .++||+|+|+||+++|+ ...|++++ |.+||+++|||||||+|.|+|+|.
T Consensus 160 ~~~~~~~~~G~~~~~~~~i----g~~~~~~GT~V~F~Pd~~iF~-~~ef~~~~~~~l~~rlrelA~lnpgv~i~l~der~ 234 (400)
T 1zxm_A 160 KMFKQTWMDNMGRAGEMEL----KPFNGEDYTCITFQPDLSKFK-MQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKL 234 (400)
T ss_dssp EEEEEEEETTTTEECCCEE----EECCSCCEEEEEEEECGGGGT-CSSCCHHHHHHHHHHHHHHHHHSSSCEEEETTEEC
T ss_pred cEEEEEEccCccccCccee----ccCCCCCccEEEEEEChHHhC-ceeecHHHHHHHHHHHHHHHhhCCCcEEEEecCCC
Confidence 3699999999988877666 333 46899999999999997 45799998 889999999999999999999984
Q ss_pred CCCCCcceeEecCCCHHHHHHHHhcCCCCCCc-eeEEEEeccceEEEEeeeecCCCCCceeeeeeCceecCCCCcchhhH
Q 010553 77 DPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGV 155 (507)
Q Consensus 77 ~~~~~~~~~f~~~~Gl~~yv~~l~~~~~~~~~-~i~~~~~~~~~~veval~~s~~~~~~~~~SFvN~I~T~~GGTHv~g~ 155 (507)
+ ++||.+||++++.++.++++ ++.+..+.+++.||||+||++++|+ ++||||||+|++||||++||
T Consensus 235 ~-----------~~Gi~~yv~~l~~~~~~~~~~~~~~~~~~~~~~~eva~~~~~~~~~--~~sfvN~I~T~~GGTH~~gf 301 (400)
T 1zxm_A 235 P-----------VKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTMSEKGFQ--QISFVNSIATSKGGRHVDYV 301 (400)
T ss_dssp C-----------CCSHHHHHHHHHTTCBCSSSSBCCCEEEEEETTEEEEEEECSSSCE--EEEEETTEECTTEEHHHHHH
T ss_pred C-----------CCCHHHHHHHHhcCCCccCCCCcceEEeecCcEEEEEEEEcCCCce--EEEEeCCccCCCCCcHHHHH
Confidence 3 37999999999988877763 3222234456779999999854774 79999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCcCCCCCHHhHhcccEEEEEEeecCCCCCCccccccCChhhHhhhhH-hhHHHHHHHHhhC
Q 010553 156 KASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ-SVQEYLTEYLELH 234 (507)
Q Consensus 156 ~~al~~~in~~~kk~~~~k~~~~~i~~~diregL~~vvsv~i~nP~FegQTK~kL~n~~v~~~v~~-~v~~~l~~~l~~n 234 (507)
++||+++||+|+++++ +++.+++++||||||++||||+++||+|+||||+||+|+++ .+++. ++.+.|..|| .|
T Consensus 302 r~altr~i~~y~~k~~---k~~~~l~~~Dvregl~avisvkv~~PqFegQTK~kL~~~~~-~~v~~~~~~~~~~~~l-~~ 376 (400)
T 1zxm_A 302 ADQIVTKLVDVVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPK-SFGSTCQLSEKFIKAA-IG 376 (400)
T ss_dssp HHHHHHHHHHHHTTCC-------CCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGG-GSSSCCCCCHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHHhc---ccCCCcCHHHHhhCeEEEEEEecCCCCcCcccchhhcCccc-ccccccchhHHHHHHH-cC
Confidence 9999999999998762 34578999999999999999999999999999999999988 77777 9999999999 79
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 010553 235 PDVLDSILSKSLSALKAA 252 (507)
Q Consensus 235 ~~~~~~I~~~~~~~~k~r 252 (507)
|++++.|+++|+.+++++
T Consensus 377 ~~~~~~i~~~a~~~~~~~ 394 (400)
T 1zxm_A 377 CGIVESILNWVKFKAQVQ 394 (400)
T ss_dssp C-----------------
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999999997766543
No 15
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=100.00 E-value=3e-51 Score=430.18 Aligned_cols=226 Identities=17% Similarity=0.238 Sum_probs=175.4
Q ss_pred CEEEEEecCCC--CCCcceeeecCCCCCCCCCeEEEEEeCccccccccCCCHHH---HHHHHHHHhccCCCcEEEEeecC
Q 010553 1 MEYHQKYSRGK--PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNT---IAGRIRELAFLNPKLTIALRKED 75 (507)
Q Consensus 1 k~y~q~F~~G~--~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~fd~~~---l~~Rl~elA~Ln~Gl~I~l~der 75 (507)
++|+|+|++|+ |+.| . +. ...+.++||+|+||||++||++ ..|++++ |.+|||++|||||||+|+|+|+|
T Consensus 172 k~y~q~f~~G~~~~~~p-~-i~--~~~~~~tGT~V~F~PD~~iF~~-~~f~~d~l~~l~~RlrelA~Ln~Gl~I~l~der 246 (418)
T 1pvg_A 172 QKYVQKWENNMSICHPP-K-IT--SYKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYLNGKS 246 (418)
T ss_dssp EEEEEEEETTTTEECCC-E-EE--ECCSSCCEEEEEEEECGGGGTC-SSCCHHHHHHHHHHHHHHHHHSTTCEEEETTEE
T ss_pred cEEEEEEEcCCCccCCC-e-ec--ccCCCCCceEEEEEEChHHcCC-cccCHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 47999999995 6666 2 31 1123579999999999999975 5799998 68999999999999999999998
Q ss_pred CCCCCCcceeEecCCCHHHHHHH----HhcCCC---------CCC-ceeEEEEeccceEEEEeeeecCCCCCceeeeeeC
Q 010553 76 SDPEKNQYNEYFFAGGLEEYVQW----LNTDKK---------PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYAN 141 (507)
Q Consensus 76 ~~~~~~~~~~f~~~~Gl~~yv~~----l~~~~~---------~~~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFvN 141 (507)
.+ .+|+.+|+++ ++.+++ +++ +++++.++.+ .|||||||+ +++ ++++||||
T Consensus 247 ~~-----------~~g~~~~v~~y~~~l~~~k~~~~~~~~~~~~~~~~i~~~~~~~--~vevA~~~~-~~~-~~~~SFvN 311 (418)
T 1pvg_A 247 LK-----------IRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINN--RWEVAFAVS-DIS-FQQISFVN 311 (418)
T ss_dssp CC-----------CCSHHHHHHTTTTTC-----------------CCSCEEEEEET--TEEEEEEEC-SSS-CEEEEEET
T ss_pred cc-----------cccHHHHHHHHHHhhhcccccccccccccCCCCCCEEEEEecc--eEEEEEEEc-CCC-ceEEEEeC
Confidence 53 1488888875 355554 566 5788877654 489999998 555 66999999
Q ss_pred ceecCCCCcchhhHHHHHHHHHHHHHHhccCCCCcCCCCCHHhHhcccEEEEEEeecCCCCCCccccccCChhhHhhhhH
Q 010553 142 SIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 221 (507)
Q Consensus 142 ~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~~~~~i~~~diregL~~vvsv~i~nP~FegQTK~kL~n~~v~~~v~~ 221 (507)
||+|++||||++||+++|++++++|++++ ++.+++++||||||++||||+++||+|+||||+||+|++++..+++
T Consensus 312 ~I~T~~GGTH~~g~~~al~~~i~~~~~k~-----~~~~l~g~Dvregl~aviSvkv~~PqFegQTK~kL~~~~~~~v~~~ 386 (418)
T 1pvg_A 312 SIATTMGGTHVNYITDQIVKKISEILKKK-----KKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRC 386 (418)
T ss_dssp TEECTTCBHHHHHHHHHHHHHHHHHHCC----------CCHHHHHTTEEEEEEECCSSCCBSSTTCCSBCCCGGGSSSCC
T ss_pred ceeCCCCCcHHHHHHHHHHHHHHHHHHhc-----ccCCCCHHHHhhCeEEEEEEecCCCcccCccchhhcCccccccccc
Confidence 99999999999999999999999998753 2367999999999999999999999999999999999877554447
Q ss_pred hhHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH
Q 010553 222 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAK 256 (507)
Q Consensus 222 ~v~~~l~~~l~~n~~~~~~I~~~~~~~~k~r~aak 256 (507)
++.+.|..||++ +.|+++++.++++|+||+
T Consensus 387 ~v~e~l~~~l~~-----~~iv~ki~~~a~ar~aa~ 416 (418)
T 1pvg_A 387 EIPLEYINKIMK-----TDLATRMFEIADANEENA 416 (418)
T ss_dssp CCCHHHHHHHTT-----SHHHHHHHHHHHC-----
T ss_pred chhHHHHHHHhh-----hHHHHHHHHHHHHHHHhh
Confidence 999999999985 556666666667666654
No 16
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.78 E-value=1.3e-20 Score=206.42 Aligned_cols=183 Identities=15% Similarity=0.129 Sum_probs=133.7
Q ss_pred EEEEEe----cCCCCCCcceeeecCCCCCCCCCeEEEEEeCccccccccCCCH---HHHHHHHHHHhccCCCcEEEEeec
Q 010553 2 EYHQKY----SRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDH---NTIAGRIRELAFLNPKLTIALRKE 74 (507)
Q Consensus 2 ~y~q~F----~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~fd~---~~l~~Rl~elA~Ln~Gl~I~l~de 74 (507)
.|++.| ++|++....... . .....+||+|+|+ |. . .++. +.|.+||+++|++|||++|.|+++
T Consensus 144 g~~~~~~lp~~~g~~~~~~~~~--~-~~~~~~GT~V~~~-----f~-~-~~~~~~~~~I~~~L~~lAllnpgv~I~L~d~ 213 (621)
T 2q2e_B 144 AHYYELMINTSTNEPDILVDEV--R-DWFRPHGTQIELE-----MR-A-AYVKGRRQSIYEYLKATAIVNPHARITLIDP 213 (621)
T ss_dssp EEEEECCCCSSSCSCCCCCEEE--C-CCSCSSCCCEEEE-----CS-C-CCCCCSSSSSHHHHHHHHHHCCSCEEEECCT
T ss_pred ceEEEEecchhccccccccccc--c-cCCCCCCCEEEEE-----ec-C-ccchHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence 467777 777765522211 1 2345699999999 43 1 3444 789999999999999999999998
Q ss_pred CCCCCCCcceeEecCCCHHHHHHHHhcCCCCCCceeEEEEeccceEEEEeeeecCCCCCceeeeeeCceecCCCCcchhh
Q 010553 75 DSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEG 154 (507)
Q Consensus 75 r~~~~~~~~~~f~~~~Gl~~yv~~l~~~~~~~~~~i~~~~~~~~~~veval~~s~~~~~~~~~SFvN~I~T~~GGTHv~g 154 (507)
+. +.|+|++|+ .+++....++++.++ +.... .++++++|+ ++| ++.||||+|+|.+||
T Consensus 214 ~~-------~~~~~~gg~----~~L~~~~~~i~p~~~--G~~~~-~~eval~~~-~~~--~i~sFvN~i~T~~GG----- 271 (621)
T 2q2e_B 214 DG-------NEEVFERAT----DKMPEPAEEILPHPE--GIELG-TLMKMLHYT-ERQ--KLAPFLRYSFCKIGL----- 271 (621)
T ss_dssp TS-------CCEEEECCC----CCCCCCCCCCCCCST--TCCHH-HHHHHHHHC-C-------CTTSSSSCC--C-----
T ss_pred Cc-------eEEEeCCcc----cchhcccccccCCce--eeccC-eEEEEEeeC-CCe--EEEEEeCCcccCCCH-----
Confidence 62 479999997 344555555553221 22222 578899987 677 589999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCC-cCCCCCHHhHhcccEEEEEEeecCCCCCCccccccCChhhHhhhhHhhHHHHHHHHh
Q 010553 155 VKASLTRTLNSLGKKSKTVKD-KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLE 232 (507)
Q Consensus 155 ~~~al~~~in~~~kk~~~~k~-~~~~i~~~diregL~~vvsv~i~nP~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~ 232 (507)
+++|+|+++.++.|+ ++.+++++|||+||++|+||+++||+|+ +++.+++..+.+.|.+||.
T Consensus 272 ------r~in~~~~~~~l~k~~~~~~lt~dDiregL~avisvki~~Pqtk----------~l~pige~~i~~~l~~~~~ 334 (621)
T 2q2e_B 272 ------LTAEEICKAAGLDPEIDPHALGRHEARKLIEAFEKVKIMAPPTD----------CLSPIGEDLIYRGLEKETT 334 (621)
T ss_dssp ------HHHHHHHHTTTCCTTSCSSSCCSSSSTTTTHHHHTSCCSCCCST----------TCCCCCHHHHHHHHHHHSC
T ss_pred ------HHHHHHHHHhCccccccCCCCCHHHHHhhcEEEEEEECCCCCcc----------ccChhHHHHHHHHHHHhcC
Confidence 678999999888776 5678999999999999999999999754 6677788888999998884
No 17
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=99.71 E-value=1.4e-17 Score=158.43 Aligned_cols=86 Identities=37% Similarity=0.666 Sum_probs=72.2
Q ss_pred CEEEEEecCCCCCCcceeeecCCCCCCCCCeEEEEEeCcccc-ccccCCCHHHHHHHHHHHhccCCCcEEEEeecCCCCC
Q 010553 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF-TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPE 79 (507)
Q Consensus 1 k~y~q~F~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF-~~~~~fd~~~l~~Rl~elA~Ln~Gl~I~l~der~~~~ 79 (507)
+.|+|+|++|+++.+++++ +++.++||+|+|+||+++| + +..|+++.|.+||+++|||||||+|.|+|+|.+.+
T Consensus 112 ~~~~~~f~~G~~~~~l~~i----~~~~~~GT~V~F~Pd~~iF~~-~~~~~~~~l~~rlrelA~ln~gv~i~l~der~~~~ 186 (198)
T 3ttz_A 112 TIYHQAYKKGVPQFDLKEV----GTTDKTGTVIRFKADGEIFTE-TTVYNYETLQQRIRELAFLNKGIQITLRDERDEEN 186 (198)
T ss_dssp EEEEEEEETTEESSCCEEE----EECSCCEEEEEEEECTTTCCS-CCCCCHHHHHHHHHHHHHHSTTCEEEEEECSSTTS
T ss_pred cEEEEEEeCCEECCCceec----cCCCCCCcEEEEEECHHHhcc-CCccCHHHHHHHHHHHhhcCCCCEEEEEeecCCCC
Confidence 3699999999999999877 4456899999999999999 5 45799999999999999999999999999996421
Q ss_pred CCcceeEecCCCH
Q 010553 80 KNQYNEYFFAGGL 92 (507)
Q Consensus 80 ~~~~~~f~~~~Gl 92 (507)
++.++|||++||
T Consensus 187 -~~~~~f~~~gGi 198 (198)
T 3ttz_A 187 -VREDSYHYEGGI 198 (198)
T ss_dssp -CEEEEECCC---
T ss_pred -cceEEEEcCCCC
Confidence 135789999996
No 18
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=99.67 E-value=5.9e-17 Score=156.41 Aligned_cols=82 Identities=32% Similarity=0.663 Sum_probs=70.6
Q ss_pred CEEEEEecCCCCCCcceeeecCCCCCCCCCeEEEEEeCccccccccCCCHHHHHHHHHHHhccCCCcEEEEeecCCCCCC
Q 010553 1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEK 80 (507)
Q Consensus 1 k~y~q~F~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~Ln~Gl~I~l~der~~~~~ 80 (507)
+.|+|+|++|+++.+++.+ +++.++||+|+|+||+++|.++..|++++|.+||+++|||||||+|.|+|+|.+
T Consensus 139 ~~~~~~f~~G~~~~~l~~~----g~~~~~GT~V~F~Pd~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~~--- 211 (220)
T 4duh_A 139 KIHRQIYEHGVPQAPLAVT----GETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG--- 211 (220)
T ss_dssp EEEEEEEETTEESSSCEEE----EECSCCEEEEEEEECTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEETTTC---
T ss_pred EEEEEEecCCcCcCCceec----cccCCCCcEEEEEECHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEccCCC---
Confidence 4699999999999999877 456789999999999999985447999999999999999999999999999964
Q ss_pred CcceeEecCC
Q 010553 81 NQYNEYFFAG 90 (507)
Q Consensus 81 ~~~~~f~~~~ 90 (507)
+.++|||++
T Consensus 212 -~~~~~~y~g 220 (220)
T 4duh_A 212 -KEDHFHYEG 220 (220)
T ss_dssp -CEEEEC---
T ss_pred -cEEEEEcCC
Confidence 467899975
No 19
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=99.66 E-value=7.1e-17 Score=156.31 Aligned_cols=81 Identities=36% Similarity=0.656 Sum_probs=71.7
Q ss_pred CEEEEEecCC-CCCCcceeeecCCCCC--CCCCeEEEEEeCccccccccCCCHHHHHHHHHHHhccCCCcEEEEeecCCC
Q 010553 1 MEYHQKYSRG-KPVTTLTCHVLPVDSK--DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSD 77 (507)
Q Consensus 1 k~y~q~F~~G-~~~~~l~~~~~~~~~~--~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~Ln~Gl~I~l~der~~ 77 (507)
+.|+|+|++| +++.+++++ +++ .++||+|+||||+++|++ ..|++++|.+||+++|||||||+|.|+|+|.+
T Consensus 143 ~~~~q~f~~Gg~~~~~l~~i----g~~~~~~~GT~V~F~PD~~iF~~-~~~~~~~l~~rlrelA~ln~gv~i~l~der~~ 217 (226)
T 4emv_A 143 AVYKQRFENGGKPVTTLKKI----GTALKSKTGTKVTFMPDATIFST-TDFKYNTISERLNESAFLLKNVTLSLTDKRTD 217 (226)
T ss_dssp EEEEEEEETTTEESSCSEEE----EECCTTCCEEEEEEEECTTTCSC-CCCCHHHHHHHHHHHHHHHCSCEEEEEETTTC
T ss_pred cEEEEEECCCCEEcCCceEe----cccCCCCCCeEEEEEECHHHcCC-CCcCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence 4699999999 999999877 433 679999999999999974 57999999999999999999999999999964
Q ss_pred CCCCcceeEecCC
Q 010553 78 PEKNQYNEYFFAG 90 (507)
Q Consensus 78 ~~~~~~~~f~~~~ 90 (507)
+.++|||++
T Consensus 218 ----~~~~f~y~g 226 (226)
T 4emv_A 218 ----EAIEFHYEN 226 (226)
T ss_dssp ----CEEEECCCC
T ss_pred ----cEEEEEcCC
Confidence 357899975
No 20
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.38 E-value=4.3e-13 Score=127.83 Aligned_cols=78 Identities=22% Similarity=0.506 Sum_probs=68.2
Q ss_pred EEEEEecCCCCCCcceeeecCCCCC--CCCCeEEEEEeCccccccccCCCHHHHHHHHHHHhccCCCcEEEEeecCCCCC
Q 010553 2 EYHQKYSRGKPVTTLTCHVLPVDSK--DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPE 79 (507)
Q Consensus 2 ~y~q~F~~G~~~~~l~~~~~~~~~~--~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~Ln~Gl~I~l~der~~~~ 79 (507)
.|+|+|++|+++.+++.+ +++ .++||+|+|+||+++|. +..++++.|.+||+++|+|||||+|.|+++|.+
T Consensus 122 ~~~~~~~~G~~~~~~~~~----g~~~~~~~GT~V~f~Pdr~~F~-~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~r~~-- 194 (201)
T 3fv5_A 122 VYNIAFENGEKVQDLQVV----GTCGKRNTGTSVHFWPDETFFD-SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN-- 194 (201)
T ss_dssp EEEEEEETTEEEEEEEEE----EECCTTCCEEEEEEEECGGGSS-CCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTT--
T ss_pred eEEEEEeCCEEcccceec----ccCCCCCCCeEEEEEECHHHcC-CCccCHHHHHHHHHHHHHhCCCCEEEEEecCCC--
Confidence 599999999998888766 333 57999999999999996 457999999999999999999999999999964
Q ss_pred CCcceeEec
Q 010553 80 KNQYNEYFF 88 (507)
Q Consensus 80 ~~~~~~f~~ 88 (507)
+.++|||
T Consensus 195 --~~~~~~y 201 (201)
T 3fv5_A 195 --TEQRWCY 201 (201)
T ss_dssp --EEEEECC
T ss_pred --cEEEEEC
Confidence 4567876
No 21
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.50 E-value=7.5e-09 Score=111.88 Aligned_cols=140 Identities=12% Similarity=0.089 Sum_probs=97.8
Q ss_pred CCCCeEEEEEeCccccccccCCCH-HHHHHHHHHHhccCCCcEEEEeecCCCCCCCcceeEecCCCHHHHHHHHhcCCCC
Q 010553 27 DRQGTRIRFWPDKQVFTTAIQFDH-NTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 105 (507)
Q Consensus 27 ~~~GT~V~F~PD~~iF~~~~~fd~-~~l~~Rl~elA~Ln~Gl~I~l~der~~~~~~~~~~f~~~~Gl~~yv~~l~~~~~~ 105 (507)
..+||+|+++ |..+ .+.. ..+.++++.+|++||+++|.|.+.. .+.|.+.... ..+.. +
T Consensus 166 ~~~GT~V~v~-----l~~~-~~e~~~~i~~~l~~~Al~~p~v~~~l~~~~-------~~~~~~~~~~----~~lp~---~ 225 (530)
T 2zbk_B 166 GFHGTSVAIS-----IPGD-WPKAKSRIYEYIKRTYIITPYAEFIFKDPE-------GNVTYYPRLT----NKIPK---P 225 (530)
T ss_dssp SCCEEEEEEE-----EECC-HHHHHHHHHHHHHHHHHHCTTCCEEEECTT-------SCEEEECCCC----CCCCC---C
T ss_pred CCCCcEEEEE-----eccc-hhhHHHHHHHHHHHHHHHCCCcEEEEEECC-------CeEEEecCcc----ccccC---C
Confidence 4689999999 4322 2344 6899999999999999999999863 2356665421 00100 0
Q ss_pred CCceeEEEEeccceEEEEeee-ecCCCCCc-eeeeeeCceecCCCCcchhhHHHHHHHHHHHHHHhccCCCCc-CCCCCH
Q 010553 106 LHDVVGFRKDVDGITIDLALQ-WCSDAYSD-TMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSG 182 (507)
Q Consensus 106 ~~~~i~~~~~~~~~~veval~-~s~~~~~~-~~~SFvN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~~-~~~i~~ 182 (507)
....+. ...++.++.+++ |+ .++.. ++.+|+|++.|..||+|+++|++++ ++.++. ..++++
T Consensus 226 ~~~~~~---~~~Gi~~~~~l~~~~-~~~~~~~l~~fl~~~ft~~g~~~a~~~~~~~-----------gl~~~~~~~~l~~ 290 (530)
T 2zbk_B 226 PQEVKP---HPYGVDREEIKILIN-NLKRDYTIKEFLVNEFQSIGDTTADKILELA-----------GLKPNKKVKNLTE 290 (530)
T ss_dssp CCCCCC---CGGGCCHHHHHHHHT-TCSSCCBHHHHHHTTSTTCCHHHHHHHHHHT-----------TCCSSCBSSCCCH
T ss_pred cceecc---CCCChhHHHHHHHHh-ccCCCceeHhhhcCccccccHHHHHHHHHhh-----------CCCCCCCcccCCH
Confidence 000111 123555666666 54 45656 7899999999999999999999865 444443 358999
Q ss_pred HhHhcccEEEEEEe-ecCCC
Q 010553 183 EHVREGLTCIISVR-VPNPE 201 (507)
Q Consensus 183 ~diregL~~vvsv~-i~nP~ 201 (507)
+|++++|.++++++ +.+|.
T Consensus 291 ~~~~~ll~a~~~~k~~~~P~ 310 (530)
T 2zbk_B 291 EEITRLVETFKKDEDFRSPS 310 (530)
T ss_dssp HHHHHHHHHHHHCCCCCCCC
T ss_pred HHHHHHHHHHHhccCCCCCC
Confidence 99999999999998 77775
No 22
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.26 E-value=6.4e-06 Score=84.05 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=100.5
Q ss_pred CCCCCeEEEEE------eCccccccccCCCHHHHHHHHHHHhccCCCcEEEEeecCCCCCCCcceeEecC-----CCHHH
Q 010553 26 KDRQGTRIRFW------PDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA-----GGLEE 94 (507)
Q Consensus 26 ~~~~GT~V~F~------PD~~iF~~~~~fd~~~l~~Rl~elA~Ln~Gl~I~l~der~~~~~~~~~~f~~~-----~Gl~~ 94 (507)
...+||+|+|+ |+...|-.+...+++.|.++++.+|+++|++++.|.+.. ...+.++ +++.+
T Consensus 140 ~~~~GT~V~v~~Lf~n~P~r~kflk~~~~e~~~i~~~~~~~al~~p~v~~~l~~ng-------~~~~~~~~~~~~~~~~~ 212 (333)
T 1b63_A 140 AHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNG-------KIVRQYRAVPEGGQKER 212 (333)
T ss_dssp CCCSEEEEEEESTTTTCHHHHHTCCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETT-------EEEEEECCCCTTCCTHH
T ss_pred cCCCCCEEEEecccccchhhhhhhccHHHHHHHHHHHHHHHhccCCCcEEEEEECC-------EEEEecCCCCCCchHHH
Confidence 34699999999 998888423334567899999999999999999998742 2344444 36888
Q ss_pred HHHHHhcCCCCCCceeEEEEeccceEEEEeeeecC--CCC-CceeeeeeCceecCCCCcchhhHHHHHHHHHHHHHHhcc
Q 010553 95 YVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCS--DAY-SDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSK 171 (507)
Q Consensus 95 yv~~l~~~~~~~~~~i~~~~~~~~~~veval~~s~--~~~-~~~~~SFvN~I~T~~GGTHv~g~~~al~~~in~~~kk~~ 171 (507)
++..+.+.. .....+.+..+.+++.++..+.+.. .++ ...++.|||+.+... ..|.++|++..+..
T Consensus 213 ~i~~i~G~~-~~~~li~i~~~~~~~~v~G~i~~p~~~~~~~~~~~~~fvNgR~V~~---------~~l~~ai~~~y~~~- 281 (333)
T 1b63_A 213 RLGAICGTA-FLEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRD---------RLINHAIRQACEDK- 281 (333)
T ss_dssp HHHHHHCHH-HHHHEEEEEEEETTEEEEEEEECGGGCCTTGGGCEEEEETTEECCC---------HHHHHHHHHHHHHH-
T ss_pred HHHHHhChh-hHhheEEEEecCCCEEEEEEEEcCccccCCCCCcEEEEECCEEecC---------HHHHHHHHHHHHhh-
Confidence 888775321 1113455666667788888887753 133 467899999999864 23445554433221
Q ss_pred CCCCcCCCCCHHhHhcccEEEEEEeecCCCCC---Ccccccc
Q 010553 172 TVKDKDISLSGEHVREGLTCIISVRVPNPEFE---GQTKTRL 210 (507)
Q Consensus 172 ~~k~~~~~i~~~diregL~~vvsv~i~nP~Fe---gQTK~kL 210 (507)
+.+.. .=.+++++.++.-..| ..||...
T Consensus 282 l~~~~-----------~P~~~l~l~~~p~~vDvNvhP~K~ev 312 (333)
T 1b63_A 282 LGADQ-----------QPAFVLYLEIDPHQVDVNVHPAKHEV 312 (333)
T ss_dssp SSSCC-----------CCCEEEEEECCGGGEECTTSTTCCCC
T ss_pred ccCCC-----------CcEEEEEEEeCchhccceECCCcCEE
Confidence 10111 1157888888755554 4455543
No 23
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=97.45 E-value=0.0012 Score=67.46 Aligned_cols=169 Identities=9% Similarity=0.108 Sum_probs=93.1
Q ss_pred EEEEEecCCCCCCcceeeecCCCCCCCCCeEEEE------EeCccccccccCCCHHHHHHHHHHHhccCCCcEEEEeecC
Q 010553 2 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF------WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 75 (507)
Q Consensus 2 ~y~q~F~~G~~~~~l~~~~~~~~~~~~~GT~V~F------~PD~~iF~~~~~fd~~~l~~Rl~elA~Ln~Gl~I~l~der 75 (507)
.|++.|.+|.++.+++.+ ..++||+|++ +|+..+|-.+...+++.|.++++++|++|||+++.|.+..
T Consensus 126 ~~~~~~~~G~~~~~~~~~------~~~~GTtV~v~~LF~n~P~R~k~lk~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~g 199 (348)
T 3na3_A 126 AYRASYSDGKLKAPPKPC------AGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQG 199 (348)
T ss_dssp EEEEEEETTEESSCCEEE------CCCSEEEEEEESTTTTCHHHHHTSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred eEEEEEeCCEEeeeeeEe------cCCCCcEEEECcccccCchhhhhccccHHHHHHHHHHHHHHHhhCCCeEEEEEECC
Confidence 488999988876555433 3568999999 6998887323345667899999999999999999999864
Q ss_pred CCCCCCcceeEec--CCCHHHHHHHHhcCCCCCCceeEEEEecc--ceEEEEeeeecCCC-CCceeeeeeCceecCCCCc
Q 010553 76 SDPEKNQYNEYFF--AGGLEEYVQWLNTDKKPLHDVVGFRKDVD--GITIDLALQWCSDA-YSDTMLGYANSIRTIDGGT 150 (507)
Q Consensus 76 ~~~~~~~~~~f~~--~~Gl~~yv~~l~~~~~~~~~~i~~~~~~~--~~~veval~~s~~~-~~~~~~SFvN~I~T~~GGT 150 (507)
.. ...|.. .+.+.+=+..+-+..- ....+.+..+.+ ++.++.-+.-..-+ -...++-|||+=+-..-
T Consensus 200 ~~-----~~~~~~~~~~~~~~~i~~i~G~~~-~~~l~~v~~~~~~~~~~i~G~is~p~~~~~~~~q~~fVNgR~v~~~-- 271 (348)
T 3na3_A 200 ET-----VADVRTLPNASTVDNIRSIFGNAV-SRELIEIGCEDKTLAFKMNGYISNANYSVKKCIFLLFINHRLVEST-- 271 (348)
T ss_dssp CS-----SCSEECCTTCCHHHHHHHHHCHHH-HTTEEEEEEEEGGGTEEEEEEEECSSCCBSSCEEEEEETTEECCCT--
T ss_pred EE-----EEEeecCCCCCHHHHHHHHhChHh-HhhcEEEEeecCCccEEEEEEEeCCccCCCcccEEEEECCeEecCH--
Confidence 21 112322 2346665554433110 011223333322 34454322111000 12357899999664331
Q ss_pred chhhHHHHHHHHHHHHHHhccCCCCcCCCCCHHhHhcccEEEEEEeecCCCCC
Q 010553 151 HIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFE 203 (507)
Q Consensus 151 Hv~g~~~al~~~in~~~kk~~~~k~~~~~i~~~diregL~~vvsv~i~nP~Fe 203 (507)
. |.++|++..+.. +.+. ..=.+++++.++.-..|
T Consensus 272 ---~----l~~ai~~~y~~~--l~~~----------~~P~~~L~l~~~p~~vD 305 (348)
T 3na3_A 272 ---S----LRKAIETVYAAY--LPKN----------THPFLYLSLEISPQNVD 305 (348)
T ss_dssp ---T----HHHHHHHHHHTT--SCTT----------CBCEEEEEEECC-----
T ss_pred ---H----HHHHHHHHHHHh--CcCC----------CceEEEEEEEeChhhee
Confidence 3 445554433221 1110 12278889888865555
No 24
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.011 Score=60.87 Aligned_cols=176 Identities=12% Similarity=0.091 Sum_probs=99.9
Q ss_pred EEEEEec-CCCCCCcceeeecCCCCCCCCCeEEEE------EeCccc-cccccCCCHHHHHHHHHHHhccCCCcEEEEee
Q 010553 2 EYHQKYS-RGKPVTTLTCHVLPVDSKDRQGTRIRF------WPDKQV-FTTAIQFDHNTIAGRIRELAFLNPKLTIALRK 73 (507)
Q Consensus 2 ~y~q~F~-~G~~~~~l~~~~~~~~~~~~~GT~V~F------~PD~~i-F~~~~~fd~~~l~~Rl~elA~Ln~Gl~I~l~d 73 (507)
-|+++|. +|......+ ...++||+|++ +|+..+ |-.+...++..|.++++++|+++|||++.|.+
T Consensus 122 ~~~~~~~~~G~~~~~~~-------~~~~~GTtV~v~~LF~n~P~R~k~flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~~ 194 (367)
T 3h4l_A 122 ADKLEYDMVGHITSKTT-------TSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYAIINAAIKFSVWN 194 (367)
T ss_dssp EEEEEECTTCCEEEEEE-------ECCSSEEEEEEESTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred EEEEEEcCCCcEEeecc-------ccCCCCeEEEEchhhccCchhhhhhccchHHHHHHHHHHHHHHHhhCCCeEEEEEE
Confidence 4788897 566543221 24569999999 699888 84334456788999999999999999999987
Q ss_pred cCCCCCCCcceeEecC--CCHHHHHHHHhcCCCCCCceeEEEE-----------------------eccceEEEEeeeec
Q 010553 74 EDSDPEKNQYNEYFFA--GGLEEYVQWLNTDKKPLHDVVGFRK-----------------------DVDGITIDLALQWC 128 (507)
Q Consensus 74 er~~~~~~~~~~f~~~--~Gl~~yv~~l~~~~~~~~~~i~~~~-----------------------~~~~~~veval~~s 128 (507)
..... .....|... +.+.+-+..+-+.... ...+.+.. +..++.++.-+.-.
T Consensus 195 ~~~~~--~~~~~~~t~~~~~~~~~i~~i~G~~~~-~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p 271 (367)
T 3h4l_A 195 ITPKG--KKNLILSTMRNSSMRKNISSVFGAGGM-RGLEEVDLVLDLNPFKNRMLGKYTDDPDFLDLDYKIRVKGYISQN 271 (367)
T ss_dssp ECTTS--CEEEEEECCSSCCHHHHHHHHHCTTTT-TTEEEEEEEEECGGGCCCCC------------CCEEEEEEEEECC
T ss_pred cCCCC--cceEEEECCCCCCHHHHHHHHhCHHHH-hccEEEecccccccccccccccccccccccccCCcEEEEEEEeCC
Confidence 42110 112334332 3566666655443211 11111211 22334444222110
Q ss_pred C----CCCCceeeeeeCceecCCCCcchhhHHHHHHHHHHHHHHhccCCCCcCCCCCHHhHhcccEEEEEEeecCCCCC-
Q 010553 129 S----DAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFE- 203 (507)
Q Consensus 129 ~----~~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~~~~~i~~~diregL~~vvsv~i~nP~Fe- 203 (507)
. ......++-|||+=+-.. ..|.++|++..+... . ...=.+++++.++--.+|
T Consensus 272 ~~~~~r~~~~~q~~fVNgR~v~~---------~~l~~ai~~~y~~~~--~-----------~~~P~~~L~l~~~p~~vDV 329 (367)
T 3h4l_A 272 SFGCGRNSKDRQFIYVNKRPVEY---------STLLKCCNEVYKTFN--N-----------VQFPAVFLNLELPMSLIDV 329 (367)
T ss_dssp STTCSBSSSSSEEEEETTEEECC---------HHHHHHHHHHHHTTC--S-----------SCBCCEEEEEECCGGGEEC
T ss_pred cccccCCCCCcEEEEECCCEecC---------HHHHHHHHHHHHhcC--C-----------CCCcEEEEEEEcChHHcce
Confidence 0 111245789999966432 356677666444321 1 112268889888755665
Q ss_pred --Cccccc
Q 010553 204 --GQTKTR 209 (507)
Q Consensus 204 --gQTK~k 209 (507)
..||..
T Consensus 330 NVhP~K~e 337 (367)
T 3h4l_A 330 NVTPDKRV 337 (367)
T ss_dssp CCSSSTTC
T ss_pred eECCCCCE
Confidence 455554
No 25
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=96.51 E-value=0.024 Score=58.28 Aligned_cols=91 Identities=10% Similarity=0.124 Sum_probs=58.4
Q ss_pred EEEEEec-CCCCCCcceeeecCCCCCCCCCeEEEEE----eCccc---cccccCCCHHHHHHHHHHHhccCCCcEEEEee
Q 010553 2 EYHQKYS-RGKPVTTLTCHVLPVDSKDRQGTRIRFW----PDKQV---FTTAIQFDHNTIAGRIRELAFLNPKLTIALRK 73 (507)
Q Consensus 2 ~y~q~F~-~G~~~~~l~~~~~~~~~~~~~GT~V~F~----PD~~i---F~~~~~fd~~~l~~Rl~elA~Ln~Gl~I~l~d 73 (507)
.|.++|. +|.... .. .....+||+|+|+ +.|.+ |-.+...+++.|.++++++|+++||+++.|.+
T Consensus 132 ~~~~~~~~~G~~~~-~~------~~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p~v~f~l~~ 204 (365)
T 1h7s_A 132 GTRLMFDHNGKIIQ-KT------PYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTN 204 (365)
T ss_dssp CEEEEECTTSCEEE-EE------ECCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEEEcCCCceEe-ec------ccCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcCCceEEEEEe
Confidence 3778886 464321 11 1245689999997 22221 31122345678999999999999999999998
Q ss_pred cCCCCCCCcceeEecCC--CHHHHHHHHhc
Q 010553 74 EDSDPEKNQYNEYFFAG--GLEEYVQWLNT 101 (507)
Q Consensus 74 er~~~~~~~~~~f~~~~--Gl~~yv~~l~~ 101 (507)
..... .....|..++ ++.+.+..+.+
T Consensus 205 ~~~~~--~~~~~~~~~~~~~~~~~i~~i~G 232 (365)
T 1h7s_A 205 QLGQG--KRQPVVCTGGSPSIKENIGSVFG 232 (365)
T ss_dssp ECTTS--CEEEEEECCCCSSHHHHHHHHHC
T ss_pred cCCCC--cEEEEEEcCCCchHHHHHHHhcC
Confidence 76321 1244566654 78888876643
No 26
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=96.40 E-value=0.15 Score=54.18 Aligned_cols=89 Identities=13% Similarity=0.279 Sum_probs=58.8
Q ss_pred eEEEEeeeecCCCC---CceeeeeeCceecC-CCCcchhhHHHHHHHHHHHHH-HhccCCCCcCCCCCHHhHhcccEEEE
Q 010553 119 ITIDLALQWCSDAY---SDTMLGYANSIRTI-DGGTHIEGVKASLTRTLNSLG-KKSKTVKDKDISLSGEHVREGLTCII 193 (507)
Q Consensus 119 ~~veval~~s~~~~---~~~~~SFvN~I~T~-~GGTHv~g~~~al~~~in~~~-kk~~~~k~~~~~i~~~diregL~~vv 193 (507)
..||+|+.|..+.- .-.++-|+|-||+. +.| ..++++++...- +..++-.. ..-+.++|
T Consensus 351 f~ve~~~a~gg~~~~~~~~~~~r~anr~pl~~~~~------~~~~~~~~~~~~w~~y~~~~~----------~~~~~~~v 414 (471)
T 1mu5_A 351 FIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEK------SDVIWKVVEELDWKRYGIESD----------QYQMVVMV 414 (471)
T ss_dssp EEEEEEEEESTTSCCBSSCEEEEEETTEEECSCGG------GSHHHHHHHHSCGGGGTCCSS----------CBCEEEEE
T ss_pred EEEEEEeeccCCCCCCCCceEEEEeccCceeecCC------cchhhhhhccCChhhcCcCCC----------CCCEEEEE
Confidence 56899999962211 23799999999986 455 255666664431 22232110 12578999
Q ss_pred EEeecCCCCCCccccccCC-hhhHhhhhHhh
Q 010553 194 SVRVPNPEFEGQTKTRLGN-PEVRKVVDQSV 223 (507)
Q Consensus 194 sv~i~nP~FegQTK~kL~n-~~v~~~v~~~v 223 (507)
++-.++--|.|-.|+.+.. +++...+...+
T Consensus 415 ~i~st~vp~~~~~k~~i~~~~ei~~ei~~a~ 445 (471)
T 1mu5_A 415 HLCSTKIPYKSAGKESIAEVEDIEKEIKNAL 445 (471)
T ss_dssp EEEESSCCBSSTTCCCBCCCHHHHHHHHHHH
T ss_pred EeccCCCCcCCCCccccCCcHHHHHHHHHHH
Confidence 9999999999999999876 56555554443
No 27
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=85.03 E-value=6.1 Score=42.31 Aligned_cols=99 Identities=14% Similarity=0.274 Sum_probs=65.1
Q ss_pred eEEEEeeeecCCCC---CceeeeeeCceecC-CCCcchhhHHHHHHHHHHHHH-HhccCCCCcCCCCCHHhHhcccEEEE
Q 010553 119 ITIDLALQWCSDAY---SDTMLGYANSIRTI-DGGTHIEGVKASLTRTLNSLG-KKSKTVKDKDISLSGEHVREGLTCII 193 (507)
Q Consensus 119 ~~veval~~s~~~~---~~~~~SFvN~I~T~-~GGTHv~g~~~al~~~in~~~-kk~~~~k~~~~~i~~~diregL~~vv 193 (507)
..||+|+.|....- .-.++-|+|-||+. +.| ..++++++...- +..++ ++. ..-+.++|
T Consensus 350 f~vE~~~a~gg~~~~~~~~~i~r~aNrvpl~~~~~------~~~~~~~~~~~~w~~y~~------~~~----~~~~~~~v 413 (530)
T 2zbk_B 350 FIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEK------SDVIWKVVEELDWKRYGI------ESD----QYQMVVMV 413 (530)
T ss_dssp EEEEEEEEESTTSCCBSSCEEEEEETTEEECTTGG------GCHHHHHHHHSCTTSSSC------CCS----SBCEEEEE
T ss_pred EEEEEEeeccCCCCCCCCceEEEEecCCceeecCC------cchhhhhhccCChhhcCc------CCC----CCCEEEEE
Confidence 56899999962211 23799999999986 445 355666664331 12222 110 12578999
Q ss_pred EEeecCCCCCCccccccCC-hhhHhhhhHhh---HHHHHHHHhh
Q 010553 194 SVRVPNPEFEGQTKTRLGN-PEVRKVVDQSV---QEYLTEYLEL 233 (507)
Q Consensus 194 sv~i~nP~FegQTK~kL~n-~~v~~~v~~~v---~~~l~~~l~~ 233 (507)
++-.++--|.|-.|+.+.. +++...+...+ ...|..||.+
T Consensus 414 ~i~st~vp~~~~~Ke~i~~~~ei~~ei~~a~~~~~r~l~~~~~~ 457 (530)
T 2zbk_B 414 HLCSTKIPYKSAGKESIAEVENIEKEIKNALMEVARKLKQYLSE 457 (530)
T ss_dssp EEEESSCCBSSSSCSCBCCCHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred EeccCCCCcCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876 66666555443 3466667754
No 28
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=61.99 E-value=27 Score=38.09 Aligned_cols=100 Identities=16% Similarity=0.347 Sum_probs=61.1
Q ss_pred eEEEEeeeecCCCC----CceeeeeeCceec-CCCCcchhhHHHHHHHHHHHHH-HhccCCCCcCCCCCHHhHh-cccEE
Q 010553 119 ITIDLALQWCSDAY----SDTMLGYANSIRT-IDGGTHIEGVKASLTRTLNSLG-KKSKTVKDKDISLSGEHVR-EGLTC 191 (507)
Q Consensus 119 ~~veval~~s~~~~----~~~~~SFvN~I~T-~~GGTHv~g~~~al~~~in~~~-kk~~~~k~~~~~i~~~dir-egL~~ 191 (507)
..||+|+.|. +.. .-.++-|+|-||. .+.|. .++++++...- +..++-.. +..+- .-+.+
T Consensus 353 fivE~~ia~g-g~~~~~~~~~~~rfanrvpll~~~g~------~~~t~~~~~~~w~~y~~~~~------~~~~p~~~~~~ 419 (621)
T 2q2e_B 353 FVVEVGMAYG-GNLPKEEKISIMRFANRVPLLYQQGG------CVTTHAVEDIKWKQYGLNQP------GGGIPVGPVIL 419 (621)
T ss_dssp EEEEEEEEES-SSSCSSSCCCEEEEETTBCCCSCCTT------CHHHHHHHHSCCTTTTCCCC------SSSSCCSSCCE
T ss_pred eEEEEeeecC-CCCCCCCceeEEEEccCCceeecCCc------cHHHHHHHhCChhhcCcCCC------CCCCCCCCEEE
Confidence 4689999996 322 2469999999994 45555 35666664432 22222111 00011 13578
Q ss_pred EEEEeecCCCCCCccccccCC-hhhHhhhhHhh---HHHHHHHH
Q 010553 192 IISVRVPNPEFEGQTKTRLGN-PEVRKVVDQSV---QEYLTEYL 231 (507)
Q Consensus 192 vvsv~i~nP~FegQTK~kL~n-~~v~~~v~~~v---~~~l~~~l 231 (507)
+|++-.++--|.|--|+...+ ||+...|...+ ...|..||
T Consensus 420 ~v~~~st~vp~~~~~ke~ia~~~ei~~ei~~a~~~~~r~l~~~l 463 (621)
T 2q2e_B 420 LIHVASINVPFTSESKDAIADIPVIKEEIDLAIKEVARKLKHYL 463 (621)
T ss_dssp EEEEECSSCCBSSSSSSSBCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCCCcCCcchhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999985 45555444333 23444444
No 29
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=50.88 E-value=4.7 Score=34.45 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.0
Q ss_pred ccce-EEEeecCCCCChhhHHHHHHHH
Q 010553 359 RYHK-IIILTDADVDGAHIRTLLLTFF 384 (507)
Q Consensus 359 RY~k-iiImtDaD~DG~HI~~Llltff 384 (507)
||.. |||+||.|.=|-.|+.-+...|
T Consensus 60 ~~~~~VIIltD~D~aGe~ir~~i~~~l 86 (118)
T 1t6t_1 60 GKWEKVILLFDLDTHGERINQKMKELL 86 (118)
T ss_dssp TTCSEEEECCCSSHHHHHHHHHHHHHH
T ss_pred hCCCEEEEEECCChhHHHHHHHHHHhc
Confidence 4666 9999999999999998876554
No 30
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=36.93 E-value=9.1 Score=32.67 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=37.5
Q ss_pred ccceEEEeecCCCCChhhHHHHHHHHHHHHHHHhhcCcEEEecCCeEEEEeCCEEEEEeCHHHHHHHHHh
Q 010553 359 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSS 428 (507)
Q Consensus 359 RY~kiiImtDaD~DG~HI~~Llltff~~~~p~Li~~G~v~~~~tPl~kv~~gk~~~~~y~~~e~~~~~~~ 428 (507)
++..|||+||.|.=|.-||..|...| |. ..|.|+...|. |=+. -+.++..+.+.+
T Consensus 49 ~~r~VIi~TD~D~~GekIRk~i~~~l----p~---~~hafi~r~~~-----gVE~---a~~~~I~~aL~~ 103 (119)
T 2fcj_A 49 EGYDVYLLADADEAGEKLRRQFRRMF----PE---AEHLYIDRAYR-----EVAA---APIWHLAQVLLR 103 (119)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHC----TT---SEEECCCTTTC-----STTT---SCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHHHHHHC----CC---CcEEeccCCcc-----Cccc---CCHHHHHHHHHh
Confidence 46789999999999999998875443 33 35788877774 3111 245566666655
No 31
>3rkc_A Capsid protein; viral protein; 1.79A {Hepatitis e virus} PDB: 3rkd_A 3ggq_A
Probab=23.03 E-value=19 Score=30.91 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=12.7
Q ss_pred CceEeeccCCcccccccc
Q 010553 309 RFQAILPLRGKILNVERK 326 (507)
Q Consensus 309 ~~qailPLrGKiLNv~ka 326 (507)
..+.+|||||||- +|++
T Consensus 76 ~~f~~LPl~GK~s-fw~~ 92 (148)
T 3rkc_A 76 KTFFVLPLRGKLS-FWEA 92 (148)
T ss_dssp EEEEEEEEEEEEE-EEET
T ss_pred cEEEEeecCCccc-hhhc
Confidence 3478999999974 5544
Done!