Query 010554
Match_columns 507
No_of_seqs 308 out of 2544
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 01:53:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0448 GlgC ADP-glucose pyrop 100.0 1.3E-76 2.9E-81 594.1 35.5 382 91-506 2-392 (393)
2 KOG1322 GDP-mannose pyrophosph 100.0 8.9E-70 1.9E-74 526.0 29.2 350 87-502 3-371 (371)
3 PLN02241 glucose-1-phosphate a 100.0 1.7E-65 3.7E-70 543.3 46.3 414 92-507 1-436 (436)
4 PRK02862 glgC glucose-1-phosph 100.0 2E-63 4.4E-68 526.2 45.5 408 92-507 1-429 (429)
5 PRK00844 glgC glucose-1-phosph 100.0 7.7E-58 1.7E-62 481.1 41.9 381 91-501 2-407 (407)
6 PRK05293 glgC glucose-1-phosph 100.0 7.4E-57 1.6E-61 469.9 41.6 369 92-507 1-379 (380)
7 PRK00725 glgC glucose-1-phosph 100.0 2.7E-56 5.9E-61 471.3 43.0 385 91-502 12-420 (425)
8 TIGR02092 glgD glucose-1-phosp 100.0 1E-52 2.2E-57 437.1 35.4 345 93-472 1-355 (369)
9 TIGR02091 glgC glucose-1-phosp 100.0 3E-51 6.4E-56 424.9 38.5 354 97-507 1-359 (361)
10 COG1208 GCD1 Nucleoside-diphos 100.0 1.5E-50 3.2E-55 417.2 36.6 343 94-507 1-357 (358)
11 TIGR01208 rmlA_long glucose-1- 100.0 2.6E-46 5.7E-51 386.7 36.9 344 96-502 1-352 (353)
12 KOG1461 Translation initiation 100.0 2.7E-42 5.9E-47 358.4 31.0 377 92-506 22-422 (673)
13 KOG1460 GDP-mannose pyrophosph 100.0 1E-42 2.3E-47 332.2 21.4 352 94-506 2-385 (407)
14 PRK14355 glmU bifunctional N-a 100.0 5.2E-41 1.1E-45 358.9 35.5 329 92-469 1-352 (459)
15 PRK14352 glmU bifunctional N-a 100.0 8.1E-41 1.8E-45 359.4 35.3 368 92-507 2-432 (482)
16 PRK14358 glmU bifunctional N-a 100.0 1.9E-40 4.2E-45 355.8 31.9 233 93-373 6-245 (481)
17 PRK14359 glmU bifunctional N-a 100.0 1.9E-39 4.2E-44 344.0 36.0 358 94-507 2-400 (430)
18 COG1207 GlmU N-acetylglucosami 100.0 3.5E-39 7.6E-44 323.8 32.1 366 94-507 2-430 (460)
19 PRK09451 glmU bifunctional N-a 100.0 2.3E-39 5.1E-44 346.0 31.7 365 91-507 2-427 (456)
20 COG1209 RfbA dTDP-glucose pyro 100.0 6.8E-40 1.5E-44 313.0 22.7 233 95-373 1-237 (286)
21 TIGR01105 galF UTP-glucose-1-p 100.0 2.6E-39 5.6E-44 325.3 27.9 243 92-372 1-277 (297)
22 PF00483 NTP_transferase: Nucl 100.0 2.6E-39 5.6E-44 317.6 26.6 241 96-373 1-247 (248)
23 TIGR01173 glmU UDP-N-acetylglu 100.0 1.2E-38 2.6E-43 339.8 33.4 359 95-507 1-423 (451)
24 KOG1462 Translation initiation 100.0 7E-40 1.5E-44 323.6 21.4 343 92-473 7-403 (433)
25 PRK14356 glmU bifunctional N-a 100.0 4.8E-38 1E-42 335.9 34.4 328 94-472 5-356 (456)
26 PRK10122 GalU regulator GalF; 100.0 1.4E-38 3E-43 320.6 27.9 245 92-374 1-280 (297)
27 PRK14353 glmU bifunctional N-a 100.0 2E-37 4.3E-42 330.2 37.6 366 91-507 2-413 (446)
28 cd06428 M1P_guanylylT_A_like_N 100.0 1.9E-38 4.1E-43 313.9 26.4 235 97-371 1-257 (257)
29 PRK14357 glmU bifunctional N-a 100.0 2.6E-37 5.7E-42 329.5 34.3 354 95-507 1-416 (448)
30 cd06425 M1P_guanylylT_B_like_N 100.0 7.3E-38 1.6E-42 305.2 27.3 232 95-372 1-233 (233)
31 PRK14354 glmU bifunctional N-a 100.0 7.4E-37 1.6E-41 326.9 34.0 362 94-507 2-426 (458)
32 PRK15480 glucose-1-phosphate t 100.0 9E-37 2E-41 306.2 27.6 235 92-372 1-241 (292)
33 cd02538 G1P_TT_short G1P_TT_sh 100.0 1.4E-36 3.1E-41 297.3 26.8 231 95-371 1-237 (240)
34 PRK14360 glmU bifunctional N-a 100.0 1.1E-35 2.3E-40 317.2 34.4 325 95-472 2-348 (450)
35 TIGR01207 rmlA glucose-1-phosp 100.0 2.4E-36 5.1E-41 302.6 26.3 231 96-372 1-237 (286)
36 cd02541 UGPase_prokaryotic Pro 100.0 4.5E-36 9.7E-41 298.5 26.4 244 95-372 1-265 (267)
37 TIGR02623 G1P_cyt_trans glucos 100.0 1E-35 2.3E-40 293.9 27.1 232 96-374 1-247 (254)
38 TIGR01099 galU UTP-glucose-1-p 100.0 4.9E-36 1.1E-40 297.0 24.0 239 95-367 1-260 (260)
39 PRK13389 UTP--glucose-1-phosph 100.0 3.1E-35 6.8E-40 296.8 28.7 244 92-372 6-280 (302)
40 cd06422 NTP_transferase_like_1 100.0 2.5E-35 5.5E-40 284.8 23.1 219 96-367 1-221 (221)
41 cd02524 G1P_cytidylyltransfera 100.0 1.9E-34 4E-39 284.8 27.3 241 97-374 1-248 (253)
42 cd04189 G1P_TT_long G1P_TT_lon 100.0 5.3E-34 1.1E-38 278.1 27.8 232 95-373 1-235 (236)
43 cd04181 NTP_transferase NTP_tr 100.0 4.7E-33 1E-37 267.2 25.1 217 97-359 1-217 (217)
44 cd06915 NTP_transferase_WcbM_l 100.0 4.2E-33 9.2E-38 268.4 24.6 223 97-368 1-223 (223)
45 cd06426 NTP_transferase_like_2 100.0 2.1E-32 4.6E-37 263.8 25.0 219 97-368 1-220 (220)
46 cd04197 eIF-2B_epsilon_N The N 100.0 3E-32 6.4E-37 263.0 18.6 206 95-318 1-217 (217)
47 COG1210 GalU UDP-glucose pyrop 100.0 1.9E-31 4.2E-36 255.2 19.2 248 92-375 2-273 (291)
48 cd02508 ADP_Glucose_PP ADP-glu 100.0 1E-30 2.2E-35 249.1 22.2 198 97-358 1-200 (200)
49 cd02523 PC_cytidylyltransferas 100.0 3.2E-30 6.9E-35 250.5 20.9 222 97-368 1-229 (229)
50 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 1.2E-29 2.5E-34 246.8 22.7 222 97-364 1-230 (231)
51 cd02507 eIF-2B_gamma_N_like Th 100.0 3.7E-28 7.9E-33 234.4 16.6 204 95-318 1-216 (216)
52 cd02509 GDP-M1P_Guanylyltransf 100.0 4.4E-27 9.5E-32 234.8 19.8 234 95-363 1-273 (274)
53 cd02540 GT2_GlmU_N_bac N-termi 99.9 4.1E-26 8.9E-31 221.2 23.6 221 97-364 1-229 (229)
54 cd04198 eIF-2B_gamma_N The N-t 99.9 5.5E-27 1.2E-31 225.8 15.5 201 95-318 1-214 (214)
55 TIGR01479 GMP_PMI mannose-1-ph 99.9 7.1E-24 1.5E-28 226.3 22.8 240 95-368 1-281 (468)
56 cd02517 CMP-KDO-Synthetase CMP 99.9 7.4E-23 1.6E-27 200.1 22.5 226 95-369 2-238 (239)
57 PRK05450 3-deoxy-manno-octulos 99.9 1.1E-22 2.3E-27 199.7 23.1 234 94-371 2-244 (245)
58 COG1213 Predicted sugar nucleo 99.9 8.9E-22 1.9E-26 185.7 18.6 229 92-374 1-231 (239)
59 PRK13368 3-deoxy-manno-octulos 99.9 7.8E-21 1.7E-25 185.6 21.7 225 94-370 2-237 (238)
60 PRK15460 cpsB mannose-1-phosph 99.8 3E-19 6.6E-24 189.5 20.1 243 94-368 5-290 (478)
61 COG4750 LicC CTP:phosphocholin 99.8 1.9E-17 4E-22 150.4 16.2 218 95-372 1-226 (231)
62 COG0836 {ManC} Mannose-1-phosp 99.8 4.1E-17 9E-22 160.3 19.8 242 95-369 2-283 (333)
63 PLN02917 CMP-KDO synthetase 99.7 2E-16 4.4E-21 159.1 23.4 234 94-373 47-289 (293)
64 TIGR00453 ispD 2-C-methyl-D-er 99.6 3.5E-14 7.5E-19 136.8 18.5 210 97-370 2-216 (217)
65 PRK00155 ispD 2-C-methyl-D-ery 99.6 5.6E-14 1.2E-18 136.4 19.2 218 93-373 2-224 (227)
66 cd02516 CDP-ME_synthetase CDP- 99.6 6.4E-14 1.4E-18 134.8 17.2 212 96-366 2-217 (218)
67 PRK09382 ispDF bifunctional 2- 99.6 2.8E-13 6E-18 140.6 20.9 208 92-373 3-214 (378)
68 cd02513 CMP-NeuAc_Synthase CMP 99.6 3.6E-13 7.8E-18 129.9 19.6 215 94-370 1-222 (223)
69 TIGR00454 conserved hypothetic 99.5 8.9E-14 1.9E-18 130.6 13.3 124 95-249 1-126 (183)
70 TIGR00466 kdsB 3-deoxy-D-manno 99.5 8.8E-13 1.9E-17 129.1 20.9 228 97-364 2-237 (238)
71 PF12804 NTP_transf_3: MobA-li 99.5 1.5E-13 3.3E-18 125.7 12.4 120 97-248 1-122 (160)
72 TIGR03310 matur_ygfJ molybdenu 99.5 6.8E-13 1.5E-17 124.5 16.8 119 97-244 2-122 (188)
73 PRK13385 2-C-methyl-D-erythrit 99.5 1.6E-12 3.6E-17 126.5 18.4 217 95-372 3-224 (230)
74 cd04182 GT_2_like_f GT_2_like_ 99.4 1.8E-12 3.9E-17 121.0 13.0 120 95-243 1-122 (186)
75 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.4 4E-13 8.7E-18 130.5 8.5 153 330-506 28-192 (231)
76 PLN02728 2-C-methyl-D-erythrit 99.4 2.8E-11 6E-16 119.2 21.0 223 88-373 18-246 (252)
77 cd02503 MobA MobA catalyzes th 99.4 8.4E-12 1.8E-16 116.6 15.4 107 95-237 1-109 (181)
78 cd04651 LbH_G1P_AT_C Glucose-1 99.4 8E-12 1.7E-16 106.4 11.5 99 396-501 1-104 (104)
79 PRK00317 mobA molybdopterin-gu 99.4 4.5E-11 9.7E-16 113.1 17.8 115 92-240 1-117 (193)
80 COG2068 Uncharacterized MobA-r 99.3 8.3E-11 1.8E-15 109.5 18.0 122 91-240 2-125 (199)
81 KOG1461 Translation initiation 99.3 7.4E-12 1.6E-16 132.0 7.7 83 388-473 331-420 (673)
82 COG2266 GTP:adenosylcobinamide 99.3 4.4E-11 9.6E-16 108.4 11.6 110 95-238 1-112 (177)
83 PRK02726 molybdopterin-guanine 99.2 5E-10 1.1E-14 106.7 17.8 112 93-238 6-119 (200)
84 TIGR03584 PseF pseudaminic aci 99.2 1.4E-09 3E-14 105.4 20.6 215 97-371 2-220 (222)
85 PRK00560 molybdopterin-guanine 99.2 1.1E-09 2.3E-14 104.1 17.9 54 90-150 4-58 (196)
86 PRK14489 putative bifunctional 99.2 8.3E-10 1.8E-14 114.9 18.1 121 91-243 2-124 (366)
87 cd05636 LbH_G1P_TT_C_like Puta 99.1 4.9E-10 1.1E-14 103.2 11.4 110 394-507 21-162 (163)
88 TIGR03202 pucB xanthine dehydr 99.1 8.7E-10 1.9E-14 104.0 13.3 123 96-242 2-126 (190)
89 TIGR02665 molyb_mobA molybdopt 99.1 4.2E-10 9.1E-15 105.5 10.9 117 95-243 1-119 (186)
90 cd04652 LbH_eIF2B_gamma_C eIF- 99.1 3.9E-10 8.5E-15 91.4 9.1 75 395-505 4-80 (81)
91 PF01128 IspD: 2-C-methyl-D-er 99.1 8.6E-09 1.9E-13 99.4 19.3 211 95-371 1-219 (221)
92 COG1211 IspD 4-diphosphocytidy 99.1 1.5E-08 3.3E-13 97.5 20.5 219 93-372 3-227 (230)
93 cd04193 UDPGlcNAc_PPase UDPGlc 99.1 5.2E-09 1.1E-13 106.6 18.2 214 93-323 14-256 (323)
94 cd02518 GT2_SpsF SpsF is a gly 99.1 8.8E-09 1.9E-13 100.3 17.9 115 97-245 2-121 (233)
95 PRK14490 putative bifunctional 99.0 1.1E-08 2.4E-13 106.7 18.8 114 88-236 168-283 (369)
96 cd04180 UGPase_euk_like Eukary 99.0 3.5E-08 7.6E-13 98.1 19.9 214 95-323 1-241 (266)
97 cd03356 LbH_G1P_AT_C_like Left 99.0 4.4E-09 9.5E-14 84.5 9.4 74 395-503 4-79 (79)
98 cd03353 LbH_GlmU_C N-acetyl-gl 98.9 5.3E-09 1.1E-13 99.0 10.9 114 393-507 36-177 (193)
99 TIGR03308 phn_thr-fam phosphon 98.9 4.7E-09 1E-13 100.3 9.9 64 394-473 6-71 (204)
100 PRK14360 glmU bifunctional N-a 98.9 1.1E-09 2.3E-14 117.2 5.7 121 382-506 272-422 (450)
101 COG1212 KdsB CMP-2-keto-3-deox 98.9 1.6E-07 3.5E-12 88.5 18.3 234 94-373 3-244 (247)
102 cd05824 LbH_M1P_guanylylT_C Ma 98.9 1.6E-08 3.4E-13 81.7 9.5 74 395-503 4-80 (80)
103 PRK14500 putative bifunctional 98.8 9.8E-08 2.1E-12 98.2 16.7 109 94-237 160-270 (346)
104 cd05787 LbH_eIF2B_epsilon eIF- 98.8 2E-08 4.4E-13 80.4 8.9 62 395-472 4-67 (79)
105 PTZ00339 UDP-N-acetylglucosami 98.8 4.2E-07 9.2E-12 96.8 21.0 214 93-323 105-351 (482)
106 TIGR01853 lipid_A_lpxD UDP-3-O 98.8 8.5E-08 1.8E-12 98.0 14.6 21 354-374 66-86 (324)
107 cd04651 LbH_G1P_AT_C Glucose-1 98.8 2.7E-08 5.8E-13 84.7 9.0 56 408-472 3-62 (104)
108 cd04745 LbH_paaY_like paaY-lik 98.8 3.4E-08 7.4E-13 90.2 10.2 41 436-479 62-102 (155)
109 COG0746 MobA Molybdopterin-gua 98.8 3E-08 6.4E-13 93.7 9.7 113 92-241 2-116 (192)
110 PLN02474 UTP--glucose-1-phosph 98.8 3.7E-06 8E-11 89.0 26.3 213 92-323 77-309 (469)
111 cd03353 LbH_GlmU_C N-acetyl-gl 98.8 3.5E-08 7.7E-13 93.4 10.2 77 393-472 18-102 (193)
112 COG1044 LpxD UDP-3-O-[3-hydrox 98.8 1.1E-07 2.5E-12 95.0 13.7 62 445-507 154-217 (338)
113 COG1207 GlmU N-acetylglucosami 98.7 2.5E-08 5.3E-13 101.9 8.5 99 402-506 281-386 (460)
114 TIGR02287 PaaY phenylacetic ac 98.7 5.1E-08 1.1E-12 92.1 9.8 90 406-505 26-129 (192)
115 cd03351 LbH_UDP-GlcNAc_AT UDP- 98.7 8.5E-08 1.8E-12 94.9 11.2 62 445-507 109-171 (254)
116 cd03351 LbH_UDP-GlcNAc_AT UDP- 98.7 8.1E-08 1.8E-12 95.0 10.9 60 446-506 104-164 (254)
117 PRK13627 carnitine operon prot 98.7 8.1E-08 1.8E-12 91.1 10.4 67 406-475 28-108 (196)
118 TIGR01173 glmU UDP-N-acetylglu 98.7 6.3E-08 1.4E-12 103.5 10.3 68 402-472 274-348 (451)
119 TIGR01852 lipid_A_lpxA acyl-[a 98.7 1.3E-07 2.9E-12 93.4 11.6 52 454-506 118-169 (254)
120 KOG1462 Translation initiation 98.7 2.4E-08 5.2E-13 100.5 6.0 78 406-502 334-412 (433)
121 PRK00892 lpxD UDP-3-O-[3-hydro 98.7 3.6E-07 7.9E-12 94.4 14.9 13 305-317 52-64 (343)
122 PRK14356 glmU bifunctional N-a 98.7 7.6E-08 1.6E-12 103.2 10.1 113 391-507 288-431 (456)
123 cd05787 LbH_eIF2B_epsilon eIF- 98.7 6.1E-08 1.3E-12 77.6 7.1 77 408-502 1-78 (79)
124 PRK05289 UDP-N-acetylglucosami 98.7 8.2E-08 1.8E-12 95.4 9.4 52 455-507 123-174 (262)
125 cd04652 LbH_eIF2B_gamma_C eIF- 98.7 6.6E-08 1.4E-12 78.2 7.1 48 409-472 2-50 (81)
126 cd03356 LbH_G1P_AT_C_like Left 98.7 6.6E-08 1.4E-12 77.6 6.9 75 408-506 1-76 (79)
127 cd04745 LbH_paaY_like paaY-lik 98.6 1.4E-07 3E-12 86.2 9.6 87 406-506 18-110 (155)
128 PRK14358 glmU bifunctional N-a 98.6 1.6E-07 3.4E-12 101.5 11.5 51 402-455 301-357 (481)
129 cd03360 LbH_AT_putative Putati 98.6 5.9E-08 1.3E-12 90.8 6.8 14 493-506 169-182 (197)
130 PLN02296 carbonate dehydratase 98.6 2E-07 4.3E-12 92.5 10.7 61 436-506 120-180 (269)
131 cd05636 LbH_G1P_TT_C_like Puta 98.6 1.7E-07 3.7E-12 86.2 9.6 57 428-488 44-102 (163)
132 PRK14353 glmU bifunctional N-a 98.6 1.7E-07 3.7E-12 100.2 10.6 96 406-506 286-394 (446)
133 TIGR01852 lipid_A_lpxA acyl-[a 98.6 2.6E-07 5.5E-12 91.5 11.0 66 436-505 77-150 (254)
134 PRK09451 glmU bifunctional N-a 98.6 1.6E-07 3.5E-12 100.7 9.8 105 395-505 270-382 (456)
135 PRK14355 glmU bifunctional N-a 98.6 1.6E-07 3.5E-12 100.8 9.8 113 391-507 287-430 (459)
136 cd04650 LbH_FBP Ferripyochelin 98.6 3.3E-07 7.2E-12 83.6 10.4 41 436-479 62-102 (154)
137 TIGR02287 PaaY phenylacetic ac 98.6 1.3E-07 2.9E-12 89.4 7.9 62 407-471 48-120 (192)
138 COG1044 LpxD UDP-3-O-[3-hydrox 98.6 4E-07 8.7E-12 91.1 10.9 59 446-505 226-285 (338)
139 PRK14354 glmU bifunctional N-a 98.6 1.8E-07 3.8E-12 100.4 8.8 92 406-504 283-380 (458)
140 cd04645 LbH_gamma_CA_like Gamm 98.6 7.4E-07 1.6E-11 81.2 11.6 40 437-479 62-101 (153)
141 PRK00892 lpxD UDP-3-O-[3-hydro 98.5 3.1E-07 6.6E-12 94.9 9.9 10 495-504 282-291 (343)
142 TIGR01853 lipid_A_lpxD UDP-3-O 98.5 3.8E-07 8.2E-12 93.3 10.3 61 446-506 219-285 (324)
143 COG0448 GlgC ADP-glucose pyrop 98.5 2.5E-07 5.5E-12 94.5 8.7 37 433-472 308-345 (393)
144 PRK05289 UDP-N-acetylglucosami 98.5 4E-07 8.8E-12 90.4 10.0 41 436-479 81-129 (262)
145 PRK14357 glmU bifunctional N-a 98.5 4.7E-07 1E-11 96.8 10.1 70 406-480 273-348 (448)
146 PLN02472 uncharacterized prote 98.5 4.8E-07 1E-11 88.6 9.1 38 436-476 127-164 (246)
147 cd04650 LbH_FBP Ferripyochelin 98.5 1E-06 2.2E-11 80.5 10.6 87 406-506 18-110 (154)
148 TIGR00965 dapD 2,3,4,5-tetrahy 98.5 6E-07 1.3E-11 88.1 9.5 17 456-472 174-190 (269)
149 PF07959 Fucokinase: L-fucokin 98.5 7.1E-07 1.5E-11 94.2 10.6 232 215-477 54-323 (414)
150 cd04646 LbH_Dynactin_6 Dynacti 98.5 8.8E-07 1.9E-11 81.7 10.0 104 391-506 18-127 (164)
151 PLN02296 carbonate dehydratase 98.5 5.3E-07 1.2E-11 89.5 9.0 88 406-507 70-169 (269)
152 cd05824 LbH_M1P_guanylylT_C Ma 98.5 4.6E-07 9.9E-12 73.1 6.9 33 438-473 20-52 (80)
153 TIGR03570 NeuD_NnaD sugar O-ac 98.5 2E-06 4.3E-11 81.2 12.5 20 353-372 61-80 (201)
154 PRK12461 UDP-N-acetylglucosami 98.5 1E-06 2.2E-11 87.1 10.5 31 445-475 102-133 (255)
155 cd04646 LbH_Dynactin_6 Dynacti 98.5 8E-07 1.7E-11 82.0 9.2 88 406-507 17-116 (164)
156 cd03352 LbH_LpxD UDP-3-O-acyl- 98.4 1.7E-06 3.6E-11 82.6 11.6 13 493-505 169-181 (205)
157 PLN02472 uncharacterized prote 98.4 9.2E-07 2E-11 86.6 9.9 87 406-506 77-175 (246)
158 cd03359 LbH_Dynactin_5 Dynacti 98.4 1.2E-06 2.6E-11 80.6 10.0 88 407-506 43-133 (161)
159 COG0663 PaaY Carbonic anhydras 98.4 1.9E-06 4.1E-11 79.0 11.0 64 427-506 58-127 (176)
160 PRK14352 glmU bifunctional N-a 98.4 7E-07 1.5E-11 96.5 9.6 65 402-470 284-355 (482)
161 cd00710 LbH_gamma_CA Gamma car 98.4 2.7E-06 6E-11 78.7 11.1 59 445-506 71-130 (167)
162 PRK12461 UDP-N-acetylglucosami 98.3 3.3E-06 7.1E-11 83.5 10.2 43 456-505 108-150 (255)
163 PRK11132 cysE serine acetyltra 98.3 1E-06 2.2E-11 87.3 6.5 29 344-372 51-86 (273)
164 cd04645 LbH_gamma_CA_like Gamm 98.3 3.2E-06 7E-11 76.9 9.1 63 438-505 41-108 (153)
165 TIGR00965 dapD 2,3,4,5-tetrahy 98.3 3.2E-06 7E-11 83.1 9.4 69 427-505 131-210 (269)
166 TIGR02091 glgC glucose-1-phosp 98.3 1.9E-06 4.1E-11 89.5 8.2 67 390-472 294-361 (361)
167 PRK11830 dapD 2,3,4,5-tetrahyd 98.3 5.8E-06 1.2E-10 81.9 10.5 17 455-471 194-210 (272)
168 TIGR02092 glgD glucose-1-phosp 98.3 2.8E-06 6.1E-11 88.5 8.9 34 436-472 305-338 (369)
169 PF01704 UDPGP: UTP--glucose-1 98.2 5.3E-05 1.2E-09 79.9 17.7 214 92-324 54-289 (420)
170 PRK14359 glmU bifunctional N-a 98.2 2.6E-06 5.7E-11 90.5 8.1 102 393-498 285-403 (430)
171 cd00897 UGPase_euk Eukaryotic 98.2 0.00011 2.3E-09 74.1 19.0 215 93-324 2-234 (300)
172 cd03358 LbH_WxcM_N_like WcxM-l 98.2 3.2E-06 7E-11 73.1 7.2 69 402-473 11-85 (119)
173 TIGR01208 rmlA_long glucose-1- 98.2 4.7E-06 1E-10 86.4 9.4 79 382-472 258-339 (353)
174 PRK00725 glgC glucose-1-phosph 98.2 3.1E-06 6.7E-11 90.1 7.9 51 391-441 328-383 (425)
175 cd03352 LbH_LpxD UDP-3-O-acyl- 98.2 1.4E-05 3.1E-10 76.2 11.4 66 436-505 93-163 (205)
176 cd00208 LbetaH Left-handed par 98.2 4.2E-06 9.2E-11 66.2 6.6 66 407-507 1-77 (78)
177 cd03350 LbH_THP_succinylT 2,3, 98.2 7.6E-06 1.6E-10 73.3 8.9 17 456-472 76-92 (139)
178 PRK00844 glgC glucose-1-phosph 98.1 6.3E-06 1.4E-10 87.2 8.8 34 436-472 332-365 (407)
179 cd03360 LbH_AT_putative Putati 98.1 2E-05 4.3E-10 73.5 11.1 28 445-472 139-167 (197)
180 PRK05293 glgC glucose-1-phosph 98.1 6.3E-06 1.4E-10 86.2 8.1 75 393-471 296-380 (380)
181 cd05635 LbH_unknown Uncharacte 98.1 1.5E-05 3.3E-10 67.4 8.5 32 438-472 65-96 (101)
182 PRK13412 fkp bifunctional fuco 98.1 2.3E-05 5.1E-10 89.4 12.4 139 216-371 154-311 (974)
183 TIGR03570 NeuD_NnaD sugar O-ac 98.1 9E-06 2E-10 76.6 7.8 27 445-471 142-169 (201)
184 PLN02694 serine O-acetyltransf 98.1 7.3E-06 1.6E-10 81.4 6.8 78 392-472 162-247 (294)
185 cd05635 LbH_unknown Uncharacte 98.0 1.7E-05 3.6E-10 67.1 7.7 43 439-506 51-93 (101)
186 cd00710 LbH_gamma_CA Gamma car 98.0 2.4E-05 5.1E-10 72.4 9.5 87 383-472 13-116 (167)
187 TIGR03532 DapD_Ac 2,3,4,5-tetr 98.0 1.3E-05 2.7E-10 78.2 8.0 50 406-471 116-176 (231)
188 cd03350 LbH_THP_succinylT 2,3, 98.0 2.4E-05 5.2E-10 70.1 9.2 29 445-473 82-111 (139)
189 PRK02862 glgC glucose-1-phosph 98.0 1.2E-05 2.7E-10 85.5 8.3 74 430-507 318-423 (429)
190 TIGR03308 phn_thr-fam phosphon 98.0 1.6E-05 3.4E-10 76.1 7.7 25 396-420 14-39 (204)
191 cd03359 LbH_Dynactin_5 Dynacti 98.0 2.2E-05 4.9E-10 72.1 8.5 16 457-472 74-89 (161)
192 COG4284 UDP-glucose pyrophosph 98.0 0.00031 6.7E-09 73.6 17.5 214 91-321 102-337 (472)
193 KOG1322 GDP-mannose pyrophosph 98.0 4.6E-06 9.9E-11 82.8 3.8 72 417-491 276-352 (371)
194 PLN02241 glucose-1-phosphate a 98.0 2.7E-05 5.8E-10 83.1 9.3 62 391-455 316-401 (436)
195 cd03358 LbH_WxcM_N_like WcxM-l 98.0 3.2E-05 7E-10 66.8 8.2 77 393-472 19-102 (119)
196 PRK13627 carnitine operon prot 97.9 3.4E-05 7.4E-10 73.2 8.5 15 456-470 72-86 (196)
197 PRK10502 putative acyl transfe 97.9 3.2E-05 6.9E-10 72.6 7.9 15 407-421 72-87 (182)
198 COG1208 GCD1 Nucleoside-diphos 97.9 2.8E-05 6.1E-10 80.8 8.1 84 405-506 260-344 (358)
199 cd06424 UGGPase UGGPase cataly 97.9 0.00036 7.7E-09 70.7 15.6 215 96-324 2-253 (315)
200 PRK09677 putative lipopolysacc 97.9 6E-05 1.3E-09 71.4 9.5 28 445-472 72-102 (192)
201 cd03354 LbH_SAT Serine acetylt 97.9 4E-05 8.6E-10 64.6 7.4 28 445-472 41-71 (101)
202 TIGR03536 DapD_gpp 2,3,4,5-tet 97.9 0.0001 2.2E-09 73.5 11.2 16 436-454 225-240 (341)
203 COG1083 NeuA CMP-N-acetylneura 97.9 0.00058 1.2E-08 64.4 15.4 218 93-373 2-224 (228)
204 PRK11830 dapD 2,3,4,5-tetrahyd 97.9 2.5E-05 5.5E-10 77.4 6.6 25 456-480 177-201 (272)
205 PLN02435 probable UDP-N-acetyl 97.9 0.00061 1.3E-08 72.8 17.5 212 92-323 114-364 (493)
206 TIGR01172 cysE serine O-acetyl 97.8 6.6E-05 1.4E-09 69.1 8.6 34 436-472 114-148 (162)
207 cd00208 LbetaH Left-handed par 97.8 7.8E-05 1.7E-09 58.9 7.7 64 396-472 6-73 (78)
208 TIGR03535 DapD_actino 2,3,4,5- 97.8 0.00016 3.5E-09 71.7 10.5 15 456-470 226-240 (319)
209 PRK00576 molybdopterin-guanine 97.7 0.0012 2.5E-08 61.6 15.3 96 115-239 3-102 (178)
210 COG0663 PaaY Carbonic anhydras 97.7 0.00016 3.6E-09 66.4 9.0 56 427-485 74-131 (176)
211 cd03357 LbH_MAT_GAT Maltose O- 97.7 0.00011 2.4E-09 68.0 7.6 28 445-472 119-147 (169)
212 cd04647 LbH_MAT_like Maltose O 97.7 0.00017 3.6E-09 61.2 7.5 18 406-423 21-39 (109)
213 PRK10092 maltose O-acetyltrans 97.6 0.00015 3.3E-09 68.0 7.8 29 445-473 130-159 (183)
214 PRK11132 cysE serine acetyltra 97.6 0.00067 1.4E-08 67.4 12.5 75 392-471 143-227 (273)
215 PLN02357 serine acetyltransfer 97.6 0.00024 5.2E-09 72.7 9.3 77 393-472 229-313 (360)
216 PLN02357 serine acetyltransfer 97.6 0.00016 3.4E-09 74.0 8.0 18 455-472 278-295 (360)
217 cd04649 LbH_THP_succinylT_puta 97.6 0.0002 4.4E-09 64.0 7.6 31 437-471 49-83 (147)
218 PRK09527 lacA galactoside O-ac 97.6 0.00021 4.6E-09 68.1 7.6 29 390-420 61-90 (203)
219 cd05825 LbH_wcaF_like wcaF-lik 97.6 0.00035 7.6E-09 59.5 8.1 31 445-475 57-88 (107)
220 PF02348 CTP_transf_3: Cytidyl 97.5 0.0012 2.6E-08 63.3 12.4 181 96-320 1-190 (217)
221 cd04649 LbH_THP_succinylT_puta 97.5 0.00053 1.1E-08 61.4 8.9 38 437-478 75-112 (147)
222 COG1861 SpsF Spore coat polysa 97.5 0.0012 2.7E-08 62.5 11.7 115 95-244 4-124 (241)
223 PLN02739 serine acetyltransfer 97.5 0.00024 5.2E-09 72.2 7.5 62 406-472 225-292 (355)
224 cd04647 LbH_MAT_like Maltose O 97.5 0.00037 8E-09 59.0 7.6 16 402-417 22-38 (109)
225 TIGR01172 cysE serine O-acetyl 97.4 0.00074 1.6E-08 62.1 9.0 19 455-473 113-131 (162)
226 PRK10191 putative acyl transfe 97.4 0.0005 1.1E-08 62.1 7.4 33 437-472 94-127 (146)
227 COG2171 DapD Tetrahydrodipicol 97.4 0.0013 2.8E-08 64.1 10.1 11 444-454 182-192 (271)
228 PRK10502 putative acyl transfe 97.3 0.00098 2.1E-08 62.5 9.0 28 445-472 125-153 (182)
229 KOG2638 UDP-glucose pyrophosph 97.3 0.037 8E-07 57.1 20.6 186 90-279 99-303 (498)
230 PLN02694 serine O-acetyltransf 97.3 0.0008 1.7E-08 67.0 8.6 23 451-473 208-230 (294)
231 PRK10191 putative acyl transfe 97.3 0.0012 2.7E-08 59.5 9.1 32 445-476 93-125 (146)
232 PLN02830 UDP-sugar pyrophospho 97.2 0.0087 1.9E-07 66.0 16.3 221 93-324 127-384 (615)
233 PRK09527 lacA galactoside O-ac 97.2 0.0013 2.9E-08 62.7 7.7 31 445-475 132-163 (203)
234 PLN02739 serine acetyltransfer 97.1 0.0009 2E-08 68.1 5.9 18 455-472 257-274 (355)
235 TIGR03535 DapD_actino 2,3,4,5- 97.1 0.0026 5.5E-08 63.4 8.8 14 493-506 242-255 (319)
236 TIGR03536 DapD_gpp 2,3,4,5-tet 97.0 0.0012 2.5E-08 66.1 6.3 15 456-470 251-265 (341)
237 COG2171 DapD Tetrahydrodipicol 97.0 0.0026 5.6E-08 62.1 8.2 28 445-472 189-217 (271)
238 cd05825 LbH_wcaF_like wcaF-lik 97.0 0.0022 4.8E-08 54.6 6.6 17 456-472 57-73 (107)
239 COG1043 LpxA Acyl-[acyl carrie 96.9 0.0042 9.1E-08 59.6 8.3 29 445-473 107-136 (260)
240 PF00132 Hexapep: Bacterial tr 96.8 0.00078 1.7E-08 45.3 2.2 26 445-470 8-34 (36)
241 cd03354 LbH_SAT Serine acetylt 96.8 0.004 8.6E-08 52.3 6.8 22 485-507 66-87 (101)
242 KOG1460 GDP-mannose pyrophosph 96.8 0.002 4.4E-08 63.4 5.5 28 445-472 313-340 (407)
243 COG1045 CysE Serine acetyltran 96.8 0.0037 8.1E-08 58.3 7.0 63 407-472 88-154 (194)
244 cd03357 LbH_MAT_GAT Maltose O- 96.8 0.0062 1.4E-07 56.3 8.6 18 455-472 118-135 (169)
245 COG1045 CysE Serine acetyltran 96.8 0.008 1.7E-07 56.1 9.1 18 455-472 119-136 (194)
246 KOG3121 Dynactin, subunit p25 96.7 0.0014 3E-08 57.6 3.4 33 445-477 91-123 (184)
247 PRK09677 putative lipopolysacc 96.7 0.0063 1.4E-07 57.6 8.2 10 407-416 86-95 (192)
248 cd03349 LbH_XAT Xenobiotic acy 96.5 0.0061 1.3E-07 55.0 6.2 19 454-472 72-90 (145)
249 PRK10092 maltose O-acetyltrans 96.3 0.02 4.3E-07 53.8 8.9 17 456-472 130-146 (183)
250 COG4801 Predicted acyltransfer 96.3 0.0097 2.1E-07 56.7 6.5 73 396-473 9-86 (277)
251 TIGR02353 NRPS_term_dom non-ri 96.2 0.0086 1.9E-07 67.6 6.7 28 445-472 646-674 (695)
252 TIGR02353 NRPS_term_dom non-ri 96.1 0.01 2.2E-07 67.0 7.0 60 407-476 132-193 (695)
253 PF00132 Hexapep: Bacterial tr 96.1 0.0064 1.4E-07 40.8 3.2 17 456-472 2-18 (36)
254 COG4801 Predicted acyltransfer 95.9 0.049 1.1E-06 52.0 9.0 59 409-472 6-67 (277)
255 KOG3121 Dynactin, subunit p25 95.8 0.0087 1.9E-07 52.7 3.3 27 446-477 103-129 (184)
256 cd03349 LbH_XAT Xenobiotic acy 95.6 0.039 8.4E-07 49.8 7.0 34 436-472 74-108 (145)
257 cd00761 Glyco_tranf_GTA_type G 95.4 0.33 7.2E-06 41.7 12.2 98 119-237 2-102 (156)
258 COG0110 WbbJ Acetyltransferase 95.2 0.05 1.1E-06 50.9 6.6 31 445-475 125-156 (190)
259 KOG4750 Serine O-acetyltransfe 95.1 0.041 8.8E-07 52.3 5.7 29 395-423 153-186 (269)
260 TIGR03552 F420_cofC 2-phospho- 94.1 0.24 5.2E-06 46.5 8.5 86 126-238 30-117 (195)
261 PF14602 Hexapep_2: Hexapeptid 94.1 0.071 1.5E-06 35.5 3.4 9 445-453 8-16 (34)
262 KOG4042 Dynactin subunit p27/W 93.3 0.081 1.7E-06 47.1 3.3 16 407-422 48-64 (190)
263 KOG2388 UDP-N-acetylglucosamin 92.4 0.92 2E-05 48.1 10.1 72 92-166 95-181 (477)
264 KOG4750 Serine O-acetyltransfe 91.3 0.41 8.9E-06 45.7 5.6 14 493-506 219-232 (269)
265 PF00535 Glycos_transf_2: Glyc 90.6 5.2 0.00011 35.0 12.1 109 119-248 3-114 (169)
266 COG0110 WbbJ Acetyltransferase 89.3 1.1 2.4E-05 41.7 6.8 33 455-506 124-156 (190)
267 PF07959 Fucokinase: L-fucokin 86.8 0.83 1.8E-05 48.5 4.7 18 406-423 273-290 (414)
268 KOG4042 Dynactin subunit p27/W 85.7 0.98 2.1E-05 40.4 3.8 25 392-416 10-36 (190)
269 PRK13412 fkp bifunctional fuco 81.8 2 4.2E-05 50.1 5.1 35 436-473 337-372 (974)
270 cd02525 Succinoglycan_BP_ExoA 81.0 21 0.00046 33.8 11.5 106 119-246 5-115 (249)
271 cd04179 DPM_DPG-synthase_like 80.3 24 0.00052 31.8 11.2 108 119-247 2-114 (185)
272 cd04186 GT_2_like_c Subfamily 79.6 40 0.00087 29.3 12.1 99 119-241 2-103 (166)
273 cd06434 GT2_HAS Hyaluronan syn 79.0 34 0.00074 32.2 12.2 97 119-238 5-103 (235)
274 cd06439 CESA_like_1 CESA_like_ 79.0 39 0.00084 32.3 12.7 107 110-239 23-136 (251)
275 cd06423 CESA_like CESA_like is 72.7 55 0.0012 28.2 11.1 102 119-240 2-106 (180)
276 cd02510 pp-GalNAc-T pp-GalNAc- 71.9 62 0.0013 32.2 12.4 105 119-242 3-113 (299)
277 cd04184 GT2_RfbC_Mx_like Myxoc 71.7 52 0.0011 30.0 11.1 104 119-243 6-115 (202)
278 cd06442 DPM1_like DPM1_like re 71.4 55 0.0012 30.4 11.4 107 119-246 2-112 (224)
279 cd04188 DPG_synthase DPG_synth 71.4 48 0.001 30.8 10.9 109 119-247 2-117 (211)
280 cd06433 GT_2_WfgS_like WfgS an 70.6 68 0.0015 28.9 11.5 97 119-239 3-102 (202)
281 PRK10073 putative glycosyl tra 70.5 41 0.00088 34.4 10.8 108 118-247 10-120 (328)
282 cd06427 CESA_like_2 CESA_like_ 70.3 83 0.0018 30.0 12.5 109 119-247 6-119 (241)
283 cd04195 GT2_AmsE_like GT2_AmsE 69.4 77 0.0017 28.9 11.7 99 119-239 3-107 (201)
284 PLN02726 dolichyl-phosphate be 67.4 45 0.00098 32.0 10.0 49 193-247 79-128 (243)
285 cd04192 GT_2_like_e Subfamily 65.1 93 0.002 28.8 11.5 106 119-242 2-112 (229)
286 cd06438 EpsO_like EpsO protein 60.5 1.3E+02 0.0028 27.2 13.3 106 119-244 2-112 (183)
287 PRK14583 hmsR N-glycosyltransf 58.6 93 0.002 33.2 11.2 101 118-239 79-182 (444)
288 cd04187 DPM1_like_bac Bacteria 56.3 1.1E+02 0.0024 27.4 10.0 106 119-246 2-113 (181)
289 TIGR03111 glyc2_xrt_Gpos1 puta 56.0 1.7E+02 0.0038 31.1 12.7 102 118-240 53-159 (439)
290 TIGR03469 HonB hopene-associat 54.2 2.6E+02 0.0057 29.1 13.6 114 119-244 45-165 (384)
291 PRK10018 putative glycosyl tra 50.7 2.7E+02 0.0058 27.8 12.9 98 119-239 10-112 (279)
292 cd06435 CESA_NdvC_like NdvC_li 49.9 1.9E+02 0.004 27.2 10.8 102 119-238 3-110 (236)
293 PRK11204 N-glycosyltransferase 49.9 2.1E+02 0.0046 29.9 12.1 100 119-239 59-161 (420)
294 cd02511 Beta4Glucosyltransfera 49.1 2.2E+02 0.0047 27.0 11.1 94 119-240 5-98 (229)
295 cd02520 Glucosylceramide_synth 49.1 1.9E+02 0.0042 26.4 10.5 103 119-237 6-111 (196)
296 cd04196 GT_2_like_d Subfamily 48.2 2E+02 0.0043 26.2 10.5 98 119-236 3-103 (214)
297 TIGR03472 HpnI hopanoid biosyn 47.8 1.8E+02 0.004 30.1 11.1 105 118-241 45-155 (373)
298 cd02522 GT_2_like_a GT_2_like_ 47.6 2.3E+02 0.005 26.1 11.7 95 119-241 4-101 (221)
299 cd06421 CESA_CelA_like CESA_Ce 47.5 2.4E+02 0.0051 26.2 12.2 100 119-239 6-111 (234)
300 cd06420 GT2_Chondriotin_Pol_N 46.5 1.8E+02 0.0039 25.8 9.7 100 119-237 2-104 (182)
301 PF13641 Glyco_tranf_2_3: Glyc 46.1 61 0.0013 30.4 6.7 107 118-243 5-117 (228)
302 KOG2978 Dolichol-phosphate man 45.3 2.8E+02 0.006 26.4 10.7 102 127-250 19-126 (238)
303 cd04185 GT_2_like_b Subfamily 44.9 2.4E+02 0.0053 25.6 11.8 101 119-238 2-105 (202)
304 PTZ00260 dolichyl-phosphate be 40.6 2.3E+02 0.005 29.0 10.3 49 193-247 148-200 (333)
305 PRK11498 bcsA cellulose syntha 39.1 3.1E+02 0.0067 32.2 11.9 97 118-240 264-367 (852)
306 PRK00923 sirohydrochlorin coba 37.4 52 0.0011 28.4 4.3 24 124-148 44-67 (126)
307 cd02526 GT2_RfbF_like RfbF is 35.9 3.6E+02 0.0079 25.0 11.9 94 119-234 2-97 (237)
308 COG1215 Glycosyltransferases, 33.7 3E+02 0.0065 28.7 10.2 106 118-242 58-167 (439)
309 COG0381 WecB UDP-N-acetylgluco 32.8 1.1E+02 0.0024 32.0 6.4 81 133-227 23-105 (383)
310 PRK13915 putative glucosyl-3-p 30.9 4.3E+02 0.0093 26.7 10.3 50 193-248 101-153 (306)
311 COG2266 GTP:adenosylcobinamide 29.9 1.1E+02 0.0023 28.6 5.1 68 305-373 91-169 (177)
312 TIGR01556 rhamnosyltran L-rham 29.8 5.3E+02 0.011 25.1 11.8 90 128-240 9-101 (281)
313 PRK10063 putative glycosyl tra 28.3 5.5E+02 0.012 24.8 12.5 98 120-240 7-109 (248)
314 cd04180 UGPase_euk_like Eukary 26.9 10 0.00022 37.7 -2.2 65 215-280 108-177 (266)
315 PF05060 MGAT2: N-acetylglucos 22.2 1.6E+02 0.0035 30.6 5.3 55 106-160 23-80 (356)
316 cd03409 Chelatase_Class_II Cla 21.3 1.4E+02 0.0031 24.1 4.0 22 127-148 45-66 (101)
317 TIGR00285 DNA-binding protein 20.0 1.5E+02 0.0033 24.3 3.6 31 120-151 4-36 (87)
No 1
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-76 Score=594.15 Aligned_cols=382 Identities=41% Similarity=0.703 Sum_probs=347.4
Q ss_pred CCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCCCcc
Q 010554 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTN 169 (507)
Q Consensus 91 ~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~~~~ 169 (507)
.++++-|+|||||.|+||.|||+.||||.+|++|+|+|||++|+||.++||++|+|+|+|++.+|.+||++.| |+.+..
T Consensus 2 ~~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~ 81 (393)
T COG0448 2 MKKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRK 81 (393)
T ss_pred CccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccc
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999888 755422
Q ss_pred cCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEE
Q 010554 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 170 ~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
.+++.++++.+. +.++.|++|||+|++|.++++++ ...+.+++++|||||+|||.+++++|++++|++|+++.
T Consensus 82 --~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~ 154 (393)
T COG0448 82 --NGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVK 154 (393)
T ss_pred --cCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEE
Confidence 356889887665 34457999999999999999974 45789999999999999999999999999999999999
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC--
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~-- 327 (507)
+++.++++.||++.+|++|+|++|.|||+.... ...+++||+|+|++++|.++|++...
T Consensus 155 ~Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~ 215 (393)
T COG0448 155 EVPREEASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDP 215 (393)
T ss_pred ECChHhhhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhccc
Confidence 999999999999999999999999999986210 12489999999999999999987543
Q ss_pred -CCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCcCCCceec-ceeee
Q 010554 328 -TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCRIK 405 (507)
Q Consensus 328 -~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~-~~~I~ 405 (507)
+..||+.++||.+++.++++||+|+|||.||||+++|++|||+|++..|.+.+|+++|+|||+....||+++. ++.+.
T Consensus 216 ~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~ 295 (393)
T COG0448 216 NSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVS 295 (393)
T ss_pred CccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEe
Confidence 4689999999999999999999999999999999999999999999778899999999999999999999997 47889
Q ss_pred ceEEcCCcEEccceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCC
Q 010554 406 DAIISHGCFLRECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADR 481 (507)
Q Consensus 406 ~siIg~gc~I~~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~ 481 (507)
+|+|+.||.|.+ .|+|||| +.|+.++.|. |+||++ |.||+||+|++|||++||+|++|++|.+.. +|.++
T Consensus 296 nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~---~~IG~~~~l~~aIIDk~v~I~~g~~i~~~~--~~~d~ 369 (393)
T COG0448 296 NSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD---VEIGEGAVLRRAIIDKNVVIGEGVVIGGDK--PEEDR 369 (393)
T ss_pred eeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC---cEECCCCEEEEEEeCCCcEeCCCcEEcCCc--chhcc
Confidence 999999999997 9999999 5899999995 999999 999999999999999999999999999864 67777
Q ss_pred CCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 482 PELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 482 ~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
.. +++. .|++||++++.++.+.+
T Consensus 370 ~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 370 KR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred cc-cccc-CCcEEEecccEeccccc
Confidence 77 6666 99999999999988765
No 2
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=8.9e-70 Score=526.03 Aligned_cols=350 Identities=41% Similarity=0.667 Sum_probs=308.8
Q ss_pred cCCCCCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCC
Q 010554 87 RRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGN 166 (507)
Q Consensus 87 ~~~~~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~ 166 (507)
..+++ +.|+|+||.||.||||+|||.++||||+|++|+ |||+|+|++|.++||++|++.++|+++++++|+.+.|
T Consensus 3 ~~~~~-~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y--- 77 (371)
T KOG1322|consen 3 TRPAD-QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY--- 77 (371)
T ss_pred ccccc-cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh---
Confidence 34455 899999999999999999999999999999987 9999999999999999999999999999999999988
Q ss_pred CcccCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEE
Q 010554 167 GTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITI 246 (507)
Q Consensus 167 ~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl 246 (507)
+.+++ |+++++.|++ +.|++||+++.|+++|.+++ .+|+|++||++|+++|++|+++|+++++++|+
T Consensus 78 ~~~lg---Vei~~s~ete----plgtaGpl~laR~~L~~~~~------~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI 144 (371)
T KOG1322|consen 78 GKELG---VEILASTETE----PLGTAGPLALARDFLWVFED------APFFVLNSDVICRMPYKEMVQFHRAHGAEITI 144 (371)
T ss_pred hhccc---eEEEEEeccC----CCcccchHHHHHHHhhhcCC------CcEEEecCCeeecCCHHHHHHHHHhcCCceEE
Confidence 33565 8999887764 57999999999999998862 49999999999999999999999999999999
Q ss_pred EEEEcCCCCCccceEEEECC-CCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhh
Q 010554 247 SCAAVGESRASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (507)
Q Consensus 247 ~~~~~~~~~~~~~g~v~id~-~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~ 325 (507)
+++++++ +++||+|++|+ +|||.+|.|||+... ++-+++|+|+|++++|.+++ .
T Consensus 145 ~~t~vde--pSkyGvv~~d~~~grV~~F~EKPkd~v---------------------snkinaGiYi~~~~vL~ri~--~ 199 (371)
T KOG1322|consen 145 VVTKVDE--PSKYGVVVIDEDTGRVIRFVEKPKDLV---------------------SNKINAGIYILNPEVLDRIL--L 199 (371)
T ss_pred EEEeccC--ccccceEEEecCCCceeEehhCchhhh---------------------hccccceEEEECHHHHhHhh--h
Confidence 9999998 89999999998 899999999998432 24567999999999999887 4
Q ss_pred CCCCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCcCCCceec-----
Q 010554 326 YPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID----- 400 (507)
Q Consensus 326 ~~~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~----- 400 (507)
+|+. |.+|++|.+++++++++|.++|||+|||+|+||+.+ +.||+.+.+.++.+++.||+.+.
T Consensus 200 ~ptS--iekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g----------~~~Yl~s~~~~t~~r~~p~~~i~~nvlv 267 (371)
T KOG1322|consen 200 RPTS--IEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTG----------FSFYLRSLPKYTSPRLLPGSKIVGNVLV 267 (371)
T ss_pred cccc--hhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHH----------HHHHHhhCcccCCccccCCccccccEee
Confidence 5554 899999999999999999999999999999999999 44666777888888888886653
Q ss_pred --------ceeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCC
Q 010554 401 --------NCRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 467 (507)
Q Consensus 401 --------~~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~ 467 (507)
+|.|. ||+||++|+|+ +..+++|.+ ++|+++++|+|.+..+. +.||.++ +|++||+||+|
T Consensus 268 d~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~--~~IG~~~-----~id~~a~lG~n 340 (371)
T KOG1322|consen 268 DSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWN--VPIGIWA-----RIDKNAVLGKN 340 (371)
T ss_pred ccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhcccc--ccccCce-----EEecccEeccc
Confidence 47776 48888899998 567888988 68999999987666665 5677765 88999999999
Q ss_pred cEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeC
Q 010554 468 VVIVNKDDVQEADRPELGFYIRSGITIIMEKATIE 502 (507)
Q Consensus 468 ~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~ 502 (507)
++|.|.+.+.++ +++++|+|+++|.++++|.
T Consensus 341 V~V~d~~~vn~g----~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 341 VIVADEDYVNEG----SGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred eEEecccccccc----eeEEeccceeecccccccC
Confidence 999999988888 7999999999999999874
No 3
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=1.7e-65 Score=543.34 Aligned_cols=414 Identities=73% Similarity=1.237 Sum_probs=361.0
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCCCccc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~~~~~ 170 (507)
|++|+|||||||+||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.| |+....+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 678999999999999999999999999999999889999999999999999999999999999999998666 4433333
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
..+.++++...|.. ..+.|++|||+||+++++++++....+.++|||++||+++++|+.+++++|+++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~--~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTP--GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccC--CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 33346666554432 1234679999999999988864221225899999999999999999999999999999999999
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCC
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~ 330 (507)
++.+++++||++.+|++++|.+|.|||..+....+++|+++|++++.+....++++++|+|+|++++|..++++..+...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 88666789999999989999999999977666678999999998875444446799999999999999888876655555
Q ss_pred chhhhhHHhhhhc-CcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCcCCCceecceeeeceEE
Q 010554 331 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAII 409 (507)
Q Consensus 331 d~~~dil~~li~~-~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~I~~siI 409 (507)
+|..++++.++++ .+|++|.++|||.|||+|++|++||+++++..+...++++.+++++.....||+.+.++.|.+|+|
T Consensus 239 ~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred chhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 7889999999987 689999999999999999999999999998777666778888999998888999998899999999
Q ss_pred cCCcEEccceEeeeeE---EeeccCceEe-eeecC----------------CCcceeeCCCcEEeeeEeCCCCEECCCcE
Q 010554 410 SHGCFLRECTVEHSIV---DYYQTESEIA-SLLAE----------------GKVPIGVGRNTKIRNCIIDKNVKIGKDVV 469 (507)
Q Consensus 410 g~gc~I~~~~I~~Sii---~~vg~~~~i~-s~l~~----------------g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~ 469 (507)
+++|+|++|.|++|+| +.+|.+++|. |+++. |.+++.||++|+|++++|++++.||++++
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 9999999888999998 5889999994 88876 33345899999999999999999999999
Q ss_pred EecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 470 IVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 470 i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
|.+++++.+..+.++++.+.+|+++||+++.|.+|++|
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 399 IINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred EecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 99999999999999999999999999999999999986
No 4
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2e-63 Score=526.15 Aligned_cols=408 Identities=57% Similarity=1.000 Sum_probs=351.0
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
|++++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.|+.. .+.
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~--~~~ 78 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD--GFS 78 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc--ccC
Confidence 458999999999999999999999999999999989999999999999999999999999999999997554211 122
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
.+.+.++...|.. ....|++|||+||+++++++++ ...++|+|++||+++++|+.++++.|++.++++|+++.+.
T Consensus 79 ~g~~~i~~~~~~~--~~~~~~lGTa~al~~a~~~l~~---~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~ 153 (429)
T PRK02862 79 GGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQE---WDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPV 153 (429)
T ss_pred CCEEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEec
Confidence 2335555444422 1124558999999999998853 1236899999999999999999999999999999999887
Q ss_pred CCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCc
Q 010554 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (507)
Q Consensus 252 ~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d 331 (507)
+.+++..||++.+|++|+|..|.|||.......+.+++++|..++.......+++++|+|+|++++|..++++. +...+
T Consensus 154 ~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~~ 232 (429)
T PRK02862 154 DEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYTD 232 (429)
T ss_pred ChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChhh
Confidence 65557789999999889999999999866566788888888777765555567999999999999998777653 23456
Q ss_pred hhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhh-ccCCCccccCCCCCcccCCCcCCCceecceeeeceEEc
Q 010554 332 FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT-KESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIIS 410 (507)
Q Consensus 332 ~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll-~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~I~~siIg 410 (507)
+..+++|.++++.++++|.++|||.|+||+++|++||++++ ...+...++.+.+++++.+.+.||+.+.++++++|+||
T Consensus 233 ~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig 312 (429)
T PRK02862 233 FGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIA 312 (429)
T ss_pred hHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEEC
Confidence 77899999999999999999999999999999999999998 55566667788899999999999999988999999999
Q ss_pred CCcEEccceEeeeeE---EeeccCceE-eeeecCC----------------CcceeeCCCcEEeeeEeCCCCEECCCcEE
Q 010554 411 HGCFLRECTVEHSIV---DYYQTESEI-ASLLAEG----------------KVPIGVGRNTKIRNCIIDKNVKIGKDVVI 470 (507)
Q Consensus 411 ~gc~I~~~~I~~Sii---~~vg~~~~i-~s~l~~g----------------~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i 470 (507)
+||.|.++.|.+|+| +.||.+++| +|+++.+ .+++.||+||+|++|||+++|+||++++|
T Consensus 313 ~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~ 392 (429)
T PRK02862 313 EGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRI 392 (429)
T ss_pred CCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEE
Confidence 999997789999999 589999999 4999862 11288999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 471 VNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 471 ~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
.+++.+.++++..+||++..|+|+|+++++|++||+|
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 393 VNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred ecCCCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 9999999999999999999999999999999999986
No 5
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=7.7e-58 Score=481.07 Aligned_cols=381 Identities=36% Similarity=0.636 Sum_probs=312.7
Q ss_pred CCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCccc
Q 010554 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 91 ~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
.|++|+|||||||.||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.| ... ..
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~-~~~-~~ 79 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTW-RLS-GL 79 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCc-Ccc-cc
Confidence 3789999999999999999999999999999999989999999999999999999999999999999997543 211 11
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
....+......+. .+..|++|||+||+.+++++.+ ...++|+|++||++++.|+.+++++|+++++++|+++..
T Consensus 80 ~~~~~~~~~~~~~---~~~~~~lGta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~ 153 (407)
T PRK00844 80 LGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIED---EDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIR 153 (407)
T ss_pred CCCeEEECCcccC---CCCCcccCCHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEe
Confidence 1112222111111 1235678999999999999863 112569999999999999999999999999999999987
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC---C
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~---~ 327 (507)
++.+.++.||++.+|++|+|..|.|||..+... .. ...++++++|+|+|++++|.+++++.. .
T Consensus 154 ~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~--~~------------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 219 (407)
T PRK00844 154 VPREEASAFGVIEVDPDGRIRGFLEKPADPPGL--PD------------DPDEALASMGNYVFTTDALVDALRRDAADED 219 (407)
T ss_pred cchHHcccCCEEEECCCCCEEEEEECCCCcccc--cC------------CCCCcEEEeEEEEEeHHHHHHHHHHhhcCCc
Confidence 655557789999999889999999999643210 00 012368999999999999877776422 1
Q ss_pred CCCchhhhhHHhhhhcCcEEEEEe------------ccEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCcCC
Q 010554 328 TSNDFGSEIIPAAIMEHDVQAYIF------------RDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLP 395 (507)
Q Consensus 328 ~~~d~~~dil~~li~~~~V~~~~~------------~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~ 395 (507)
...++.+++++.+++++++++|.+ +|||.|||++++|++||+++++..+...++++.+++++.....+
T Consensus 220 ~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~ 299 (407)
T PRK00844 220 SSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLP 299 (407)
T ss_pred ccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCC
Confidence 345677899999999999999977 59999999999999999999987777777788889999888888
Q ss_pred Cceecc-e----eeeceEEcCCcEEccceEeeeeE---EeeccCceE-eeeecCCCcceeeCCCcEEeeeEeCCCCEECC
Q 010554 396 PTKIDN-C----RIKDAIISHGCFLRECTVEHSIV---DYYQTESEI-ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 466 (507)
Q Consensus 396 p~~i~~-~----~I~~siIg~gc~I~~~~I~~Sii---~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~ 466 (507)
|+.+.. + .+.+++||+||.|++++|++|+| +.|+.+++| +|+|+++ +.||++|+|.+|||+++++||+
T Consensus 300 ~~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~---~~i~~~~~i~~~ii~~~~~i~~ 376 (407)
T PRK00844 300 PAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG---VRIGRGAVVRRAILDKNVVVPP 376 (407)
T ss_pred CceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC---CEECCCCEEEeeEECCCCEECC
Confidence 887742 2 57899999999998789999999 588999999 5999999 8999999999999999999999
Q ss_pred CcEEecCCCCccCCCCCCCeEEc-CCeEEEcCCCEe
Q 010554 467 DVVIVNKDDVQEADRPELGFYIR-SGITIIMEKATI 501 (507)
Q Consensus 467 ~~~i~~~~~~~e~~~~~~~~~i~-~g~~vig~~~~i 501 (507)
+++|.+. . +.+ .++|.+. +|+++|++|++|
T Consensus 377 ~~~i~~~--~-~~~--~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 377 GATIGVD--L-EED--RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred CCEECCC--c-ccc--ccceEeccceEEEeCCCCCC
Confidence 9999873 1 333 4578885 899999999865
No 6
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=7.4e-57 Score=469.93 Aligned_cols=369 Identities=38% Similarity=0.625 Sum_probs=305.6
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCCCccc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~~~~~ 170 (507)
|++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.. |+....
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~- 79 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRI- 79 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCC-
Confidence 578999999999999999999999999999999988999999999999999999999999999999986322 332111
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
...++++...+. +..++|++|||+||+++++++.+ ...++|||++||++++.|+.++++.|+++++++|+++..
T Consensus 80 -~~~~~i~~~~~~--~~~~~~~~Gta~al~~a~~~l~~---~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~ 153 (380)
T PRK05293 80 -NGGVTILPPYSE--SEGGKWYKGTAHAIYQNIDYIDQ---YDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIE 153 (380)
T ss_pred -CCCEEEeCCccc--CCCCcccCCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEE
Confidence 122555522221 12235789999999999998852 123689999999999999999999999999999998877
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC---C
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~---~ 327 (507)
.+.+++..||++.+|++|+|.+|.|||..+. .+++++|+|+|++++|..+++... .
T Consensus 154 ~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 212 (380)
T PRK05293 154 VPWEEASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPN 212 (380)
T ss_pred cchhhccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCC
Confidence 7655578899999998899999999986432 368899999999999987776532 2
Q ss_pred CCCchhhhhHHhhhhc-CcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCcCCCceec-ceeee
Q 010554 328 TSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCRIK 405 (507)
Q Consensus 328 ~~~d~~~dil~~li~~-~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~-~~~I~ 405 (507)
...+|.+++++.++++ .++++|.+++||.||||+++|++||++++...+...++++.+.+++.+.+.+|++|+ +++|.
T Consensus 213 ~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 292 (380)
T PRK05293 213 SSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVK 292 (380)
T ss_pred chhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEe
Confidence 2356778999999876 689999999999999999999999999998777667788888998888899999997 69999
Q ss_pred ceEEcCCcEEccceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCC
Q 010554 406 DAIISHGCFLRECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADR 481 (507)
Q Consensus 406 ~siIg~gc~I~~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~ 481 (507)
+|+||+||.|+ +.+.+|+| +.||.++.|. |+|+++ +.||++|+|.+|+|+++++||+++.|.++..
T Consensus 293 ~~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~---~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~------ 362 (380)
T PRK05293 293 NSLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPG---AKIGENVVIERAIIGENAVIGDGVIIGGGKE------ 362 (380)
T ss_pred cCEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCC---CEECCCeEEeEEEECCCCEECCCCEEcCCCc------
Confidence 99999999997 46788988 4677888774 888888 7888888888888888888888888876432
Q ss_pred CCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 482 PELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 482 ~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+..+||++++|+++++|
T Consensus 363 ---------~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 363 ---------VITVIGENEVIGVGTVI 379 (380)
T ss_pred ---------eeEEEeCCCCCCCCcEe
Confidence 24789999999999986
No 7
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.7e-56 Score=471.28 Aligned_cols=385 Identities=36% Similarity=0.612 Sum_probs=315.1
Q ss_pred CCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCccc
Q 010554 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 91 ~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
.+++++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.| +.....
T Consensus 12 ~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~-~~~~~~ 90 (425)
T PRK00725 12 LTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGW-SFFREE 90 (425)
T ss_pred hhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhh-cccccC
Confidence 3478999999999999999999999999999999955999999999999999999999999999999997543 210000
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
....+.++...+.. ..++|++|||+|++++++++++ ...++|+|++||++++.||.++++.|+++++++|+++.+
T Consensus 91 ~~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~---~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~ 165 (425)
T PRK00725 91 LGEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRR---YDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLE 165 (425)
T ss_pred CCCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEe
Confidence 11235555443321 1235678999999999999863 124689999999999999999999999999999999988
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC---C
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~---~ 327 (507)
++.+++..||++.+|++++|.+|.|||..+.. +.. ....+++++|+|+|++++|..+|++.. .
T Consensus 166 ~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~~------------~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~ 231 (425)
T PRK00725 166 VPREEASAFGVMAVDENDRITAFVEKPANPPA--MPG------------DPDKSLASMGIYVFNADYLYELLEEDAEDPN 231 (425)
T ss_pred cchhhcccceEEEECCCCCEEEEEECCCCccc--ccc------------CccceEEEeeEEEEeHHHHHHHHHHhhcCCC
Confidence 76556788999999988999999999864320 000 012368999999999999877776532 2
Q ss_pred CCCchhhhhHHhhhhcCcEEEEEec-----------cEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCcCCC
Q 010554 328 TSNDFGSEIIPAAIMEHDVQAYIFR-----------DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPP 396 (507)
Q Consensus 328 ~~~d~~~dil~~li~~~~V~~~~~~-----------gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p 396 (507)
...+|.+++++.+++++++++|.++ +||.|||||++|++||+++++..+...+++..+++++.....||
T Consensus 232 ~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~ 311 (425)
T PRK00725 232 SSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPP 311 (425)
T ss_pred ccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCC
Confidence 3457888999999999999999996 59999999999999999999877777777888899998888888
Q ss_pred ceec------ceeeeceEEcCCcEEccceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEeeeEeCCCCEECC
Q 010554 397 TKID------NCRIKDAIISHGCFLRECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 466 (507)
Q Consensus 397 ~~i~------~~~I~~siIg~gc~I~~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~ 466 (507)
+.+- .+.+.+|+||+||+|++|.|++|+| +.||.+++|. |+|+++ |.||++|+|.+||||++|+|++
T Consensus 312 ~~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~---~~I~~~~~i~~~ii~~~~~i~~ 388 (425)
T PRK00725 312 AKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD---VNVGRSCRLRRCVIDRGCVIPE 388 (425)
T ss_pred CeEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC---CEECCCCEEeeEEECCCCEECC
Confidence 8763 2467899999999998889999999 5889999994 999999 8999999999999999999999
Q ss_pred CcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeC
Q 010554 467 DVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIE 502 (507)
Q Consensus 467 ~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~ 502 (507)
+++|+.. ..++.++ ....+.|+++|++++...
T Consensus 389 ~~~i~~~-~~~~~~~---~~~~~~~~~~i~~~~~~~ 420 (425)
T PRK00725 389 GMVIGED-PEEDAKR---FRRSEEGIVLVTREMLDK 420 (425)
T ss_pred CCEECCC-CCCCCce---eEecCccEEEECCCcccc
Confidence 9999754 3333333 344578999999997653
No 8
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=1e-52 Score=437.11 Aligned_cols=345 Identities=24% Similarity=0.409 Sum_probs=255.6
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCch-HHHHHHHhcc-cCCCccc
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA-SLNRHIARTY-FGNGTNF 170 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~-~l~~~l~~~~-~~~~~~~ 170 (507)
++|+|||||||+||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++|+.+ ++.+|+.+.. |+.....
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~ 80 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR 80 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc
Confidence 4689999999999999999999999999999998899999999999999999999999987 9999996432 3322111
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
. +...++ .|.. +.+..|++++++.+++++++ ...++|||++||+++++||.+++++|+++++++|+++.+
T Consensus 81 ~-~~~~~~--~~e~----~~l~tg~~~a~~~a~~~l~~---~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 150 (369)
T TIGR02092 81 D-GLFVFP--YNDR----DDLSEGGKRYFSQNLEFLKR---STSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKK 150 (369)
T ss_pred C-cEEEEe--ccCC----CCcccChHHHHHHHHHHHHh---CCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEe
Confidence 1 111112 1211 11224777789888888842 123789999999999999999999999999999999988
Q ss_pred cCCCCCccc-eEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC-
Q 010554 251 VGESRASDY-GLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (507)
Q Consensus 251 ~~~~~~~~~-g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~- 328 (507)
++...+..| +++..|++|+|..+.+++... ....+++|+|+|++++|.++++...+.
T Consensus 151 v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~---------------------~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 209 (369)
T TIGR02092 151 VKPADASEYDTILRFDESGKVKSIGQNLNPE---------------------EEENISLDIYIVSTDLLIELLYECIQRG 209 (369)
T ss_pred cCHHHccccCcEEEEcCCCCEEeccccCCCC---------------------CcceeeeeEEEEEHHHHHHHHHHHhhcC
Confidence 764345667 456677778888874433211 124578999999999887777654332
Q ss_pred CCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCcccc-CCCCCcccCCCcCCCceec-ceeeec
Q 010554 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFY-DPKTPFYTSPRFLPPTKID-NCRIKD 406 (507)
Q Consensus 329 ~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~-~~~~~i~~~~~~~~p~~i~-~~~I~~ 406 (507)
..++..++++.++++.++++|.+++||.||||+++|++||+++++++.....+ ....++++.....+|++++ +++|.+
T Consensus 210 ~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~ 289 (369)
T TIGR02092 210 KLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVEN 289 (369)
T ss_pred ccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEE
Confidence 33456789999888889999999999999999999999999999876443333 2334666666667999997 699999
Q ss_pred eEEcCCcEEccceEeeeeE---EeeccCceE-eeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 407 AIISHGCFLRECTVEHSIV---DYYQTESEI-ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 407 siIg~gc~I~~~~I~~Sii---~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
|+||+||.|+ +.|++|+| +.+|.+++| +|+++++ +.|+++++|.+||||++++||+++.+.+
T Consensus 290 ~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~---~~I~~~~~i~~~ii~~~~~v~~~~~~~~ 355 (369)
T TIGR02092 290 SLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR---TVIGEGAHLENVIIDKDVVIEPNVKIAG 355 (369)
T ss_pred eEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC---CEECCCCEEEEEEECCCCEECCCCEeCC
Confidence 9999999997 67899988 244555555 2555555 4555555555555555555555555543
No 9
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=3e-51 Score=424.87 Aligned_cols=354 Identities=46% Similarity=0.791 Sum_probs=283.9
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
|||||||.||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.| ..... ....++
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~-~~~~~-~~~~~~ 78 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGW-DFDGF-IDGFVT 78 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhcc-CccCc-cCCCEE
Confidence 6999999999999999999999999999978999999999999999999999999999999997543 21110 012355
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCCCC
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 256 (507)
++...+. +..++|++||+++++.+.+++++ ...++|+|++||++++.++.++++.|+++++++|+++.+.+.+.+
T Consensus 79 ~~~~~~~--~~~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~ 153 (361)
T TIGR02091 79 LLPAQQR--ESGTDWYQGTADAVYQNLDLIED---YDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEA 153 (361)
T ss_pred EeCCccc--CCCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhc
Confidence 5543332 12345678999999999988853 124689999999999999999999999988889999888765557
Q ss_pred ccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC---CCCCchh
Q 010554 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PTSNDFG 333 (507)
Q Consensus 257 ~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~---~~~~d~~ 333 (507)
..||++.+|++++|.+|.|||..+... .+. ...+++++|+|+|++++|..+++... +...+|.
T Consensus 154 ~~~g~v~~d~~~~v~~~~ekp~~~~~~--------~~~------~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~ 219 (361)
T TIGR02091 154 SRFGVMQVDEDGRIVDFEEKPANPPSI--------PGM------PDFALASMGIYIFDKDVLKELLEEDADDPESSHDFG 219 (361)
T ss_pred ccccEEEECCCCCEEEEEECCCCcccc--------ccc------ccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccH
Confidence 789999999889999999998543210 000 01248999999999999877776532 2234677
Q ss_pred hhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCC-cCCCceecc-eeeeceEEcC
Q 010554 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPR-FLPPTKIDN-CRIKDAIISH 411 (507)
Q Consensus 334 ~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~-~~~p~~i~~-~~I~~siIg~ 411 (507)
+++++.+++++++++|.+++||.||||+++|++|+++++++.+....+...+++++... +.|++.++. +.|.+|+||+
T Consensus 220 ~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~ 299 (361)
T TIGR02091 220 KDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSE 299 (361)
T ss_pred HHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEECC
Confidence 89999999999999999999999999999999999999987654444455566655443 345566764 6889999999
Q ss_pred CcEEccceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCC
Q 010554 412 GCFLRECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 491 (507)
Q Consensus 412 gc~I~~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g 491 (507)
||.|++++|.+|+| ++| |.||++|+|.+|+|++++.||.++.|.+
T Consensus 300 ~~~I~~~~v~~s~i-------------~~~---~~I~~~~~i~~sii~~~~~v~~~~~l~~------------------- 344 (361)
T TIGR02091 300 GCIISGATVSHSVL-------------GIR---VRIGSGSTVEDSVIMGDVGIGRGAVIRN------------------- 344 (361)
T ss_pred CCEECCCEEEccEE-------------CCC---CEECCCCEEeeeEEeCCCEECCCCEEee-------------------
Confidence 99999768888877 888 8999999999999999999999999975
Q ss_pred eEEEcCCCEeCCCccC
Q 010554 492 ITIIMEKATIEDGMVI 507 (507)
Q Consensus 492 ~~vig~~~~i~~gt~i 507 (507)
++||++++|+++++|
T Consensus 345 -~ivg~~~~i~~~~~i 359 (361)
T TIGR02091 345 -AIIDKNVRIGEGVVI 359 (361)
T ss_pred -eEECCCCEECCCCEe
Confidence 678888888888765
No 10
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-50 Score=417.18 Aligned_cols=343 Identities=25% Similarity=0.433 Sum_probs=268.7
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
.|+|||||||+||||+|||.++||||+||+|+ |||+|+|++|.++|+++|+|+++|..+++.+|+...+ .++ .
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~-----~~~-~ 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGE-----GLG-V 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhccc-----ccC-C
Confidence 48999999999999999999999999999999 9999999999999999999999999999998886432 222 1
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCC
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 253 (507)
.++++.... ++|||++|+++.+++. .++|++++||++++.|+.+++++|+++.+.+|+....+.+
T Consensus 74 ~I~y~~e~~---------~lGTag~l~~a~~~l~------~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~ 138 (358)
T COG1208 74 RITYVVEKE---------PLGTAGALKNALDLLG------GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLD 138 (358)
T ss_pred ceEEEecCC---------cCccHHHHHHHHHhcC------CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCC
Confidence 244443222 3799999999998885 2899999999999999999999999998889998888877
Q ss_pred CCCccceEEEECCC-CcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCch
Q 010554 254 SRASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (507)
Q Consensus 254 ~~~~~~g~v~id~~-grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~ 332 (507)
+ +.||++..+++ ++|.+|.|||.... ..++++++|+|+|++++|. +++. ....+|
T Consensus 139 ~--~~~Gvv~~~~~~~~v~~f~ekp~~~~-------------------~~~~~in~Giyi~~~~v~~-~i~~--~~~~~~ 194 (358)
T COG1208 139 P--SEFGVVETDDGDGRVVEFREKPGPEE-------------------PPSNLINAGIYIFDPEVFD-YIEK--GERFDF 194 (358)
T ss_pred C--CcCceEEecCCCceEEEEEecCCCCC-------------------CCCceEEeEEEEECHHHhh-hccc--CCcccc
Confidence 4 78999998844 59999999995311 1347999999999999997 3232 235567
Q ss_pred hhhhHHhhhhcCc-EEEEEeccEEEecCCHHHHHHHHHHhhccCCCccccCCCC---CcccCCCcCCCceec-ceeee-c
Q 010554 333 GSEIIPAAIMEHD-VQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKT---PFYTSPRFLPPTKID-NCRIK-D 406 (507)
Q Consensus 333 ~~dil~~li~~~~-V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~---~i~~~~~~~~p~~i~-~~~I~-~ 406 (507)
..+++|.+++++. +++|.++|||.|||+|++|.+|+..+++............ .+.. ..+.+|++++ +|+|. +
T Consensus 195 ~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~ 273 (358)
T COG1208 195 EEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPG 273 (358)
T ss_pred hhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCEECCC
Confidence 7789999999987 9999999999999999999999999986443221000000 0122 4556777766 35554 2
Q ss_pred ------eEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccC
Q 010554 407 ------AIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 407 ------siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
++||+||.|+ ++.|.+ |+++++ +.||++++|.+||||.||+||++. + +++
T Consensus 274 ~~i~~~~~ig~~~~I~~~~~i~~-------------Sii~~~---~~i~~~~~i~~sIi~~~~~ig~~~-~-----i~d- 330 (358)
T COG1208 274 ALIGPYTVIGEGVTIGNGVEIKN-------------SIIMDN---VVIGHGSYIGDSIIGENCKIGASL-I-----IGD- 330 (358)
T ss_pred CEECCCcEECCCCEECCCcEEEe-------------eEEEcC---CEECCCCEEeeeEEcCCcEECCce-e-----ecc-
Confidence 4444455554 234444 555999 899999999999999999999922 2 677
Q ss_pred CCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 480 DRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 480 ~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
.....+..+..| +++++++.+++++++
T Consensus 331 ~~~g~~~~i~~g-~~~~~~~~~~~~~~~ 357 (358)
T COG1208 331 VVIGINSEILPG-VVVGPGSVVESGEIE 357 (358)
T ss_pred eEecCceEEcCc-eEeCCCccccCcccc
Confidence 777777788888 778888888877653
No 11
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=2.6e-46 Score=386.74 Aligned_cols=344 Identities=19% Similarity=0.296 Sum_probs=253.2
Q ss_pred EEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEecc-CchHHHHHHHhcccCCCcccCCCe
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQF-NSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~-~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
+|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|++++ +.+++.+|+.+. ..|+. .
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~-----~~~~~-~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEG-----ERFGA-K 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcc-----cccCc-e
Confidence 589999999999999999999999999999 999999999999999999999999 889999998631 23331 1
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 254 (507)
+.++. +. +.+||+++++.++.+++ .++|+|++||++++.++.++++.|+++++++|+++.+.++
T Consensus 74 ~~~~~--~~-------~~~G~~~al~~a~~~l~------~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~- 137 (353)
T TIGR01208 74 ITYIV--QG-------EPLGLAHAVYTARDFLG------DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD- 137 (353)
T ss_pred EEEEE--CC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC-
Confidence 23322 21 23699999999998874 3689999999999999999999999999999999988765
Q ss_pred CCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC--CCch
Q 010554 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (507)
Q Consensus 255 ~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~~d~ 332 (507)
+..||++..+++++|.+|.|||..+. ++++++|+|+|++.++. .+++..+. ...+
T Consensus 138 -~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~~ 194 (353)
T TIGR01208 138 -PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGELE 194 (353)
T ss_pred -hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcEE
Confidence 56799988877789999999987432 36789999999997664 55543331 2344
Q ss_pred hhhhHHhhhhc-CcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCcCCCceec-ceeeeceEEc
Q 010554 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCRIKDAIIS 410 (507)
Q Consensus 333 ~~dil~~li~~-~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~-~~~I~~siIg 410 (507)
..++++.++++ .+|++|.++|||.|||||++|++||+.++++... .+. .+.+.+.+.+|++++ ++.|.+++|+
T Consensus 195 l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~-~~~----~i~~~~~i~~~~~i~~~~~i~~~~i~ 269 (353)
T TIGR01208 195 ITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVER-EVQ----GVDDESKIRGRVVVGEGAKIVNSVIR 269 (353)
T ss_pred HHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc-ccC----CcCCCCEEcCCEEECCCCEEeCCEEE
Confidence 67899999876 5799999999999999999999999999975321 111 245566677888887 5888888887
Q ss_pred CCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCc-EEecCCCCccCCCCCCCeEE
Q 010554 411 HGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDV-VIVNKDDVQEADRPELGFYI 488 (507)
Q Consensus 411 ~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~-~i~~~~~~~e~~~~~~~~~i 488 (507)
.+|.|+ +|.|.+|+|. . .+.|++| +.|+ +|.|++|+|+++|+|+.++ .+.+ ..+++..++..+..+
T Consensus 270 ~~~~Ig~~~~I~~~~i~---~----~~~Ig~~---~~i~-~~~i~~s~i~~~~~i~~~~~~~~~-~ii~~~~~i~~~~~~ 337 (353)
T TIGR01208 270 GPAVIGEDCIIENSYIG---P----YTSIGEG---VVIR-DAEVEHSIVLDESVIEGVQARIVD-SVIGKKVRIKGNRRR 337 (353)
T ss_pred CCcEECCCCEEcCcEEC---C----CCEECCC---CEEe-eeEEEeeEEcCCCEEcCCcceeec-CEEcCCCEECCCccc
Confidence 778887 6777777651 0 1222333 3333 3444456666666665552 4443 234444444444333
Q ss_pred cC-CeEEEcCCCEeC
Q 010554 489 RS-GITIIMEKATIE 502 (507)
Q Consensus 489 ~~-g~~vig~~~~i~ 502 (507)
.+ ...++|++++|+
T Consensus 338 ~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 338 PGDLRLTIGDYSQVE 352 (353)
T ss_pred ccccceEEcCCceec
Confidence 32 124567666654
No 12
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-42 Score=358.40 Aligned_cols=377 Identities=17% Similarity=0.302 Sum_probs=263.9
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
...+|||+||.-+-+||+|+|..+|++|||++|. |||+|+|++|..+|+.+|+|+++.+..++++|+.+.-|.....|
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~- 99 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSF- 99 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccc-
Confidence 4679999999999999999999999999999999 99999999999999999999999999999999986445443222
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHH-----cCCceEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD-----RDADITI 246 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~-----~~a~~tl 246 (507)
.+..+.... ....|||+|... .++...+||++++||++.+++|.+++++||+ +++.|||
T Consensus 100 --~v~ti~s~~---------~~S~GDamR~id-----~k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTm 163 (673)
T KOG1461|consen 100 --IVVTICSGE---------SRSVGDAMRDID-----EKQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTM 163 (673)
T ss_pred --eEEEEcCCC---------cCcHHHHHHHHH-----hcceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEE
Confidence 233332111 258999999873 2344568999999999999999999999974 4688999
Q ss_pred EEEEcCCCCCccceEEEEC-CCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHh-
Q 010554 247 SCAAVGESRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW- 324 (507)
Q Consensus 247 ~~~~~~~~~~~~~g~v~id-~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~- 324 (507)
++.+.......+--++.+| .+.|+++|.+-.. .....+++.++|..++.. ....++.+++|.+|+++++..|-++
T Consensus 164 v~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~--~~~~~~l~~sl~d~~~~v-~vr~DL~dc~IdIcS~~V~sLF~dNF 240 (673)
T KOG1461|consen 164 VFKESSTRETTEQVVIAVDSRTSRLLHYQKCVR--EKHDIQLDLSLFDSNDEV-EVRNDLLDCQIDICSPEVLSLFTDNF 240 (673)
T ss_pred EEeccccccCCcceEEEEcCCcceEEeehhhcc--cccccccCHHHhcCCCcE-EEEccCCCceeeEecHhHHHHhhhcc
Confidence 9987642111233455666 4789999976211 223567888888776554 3467999999999999999766554
Q ss_pred hCCCCCchhhhhHHhhhhcCcEEEEEecc--EEEecCCHHHHHHHHHHhhccCC-----CccccCCCCCc-ccCCC-c-C
Q 010554 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRD--YWEDIGTIKSFYEANMALTKESP-----AFHFYDPKTPF-YTSPR-F-L 394 (507)
Q Consensus 325 ~~~~~~d~~~dil~~li~~~~V~~~~~~g--yw~dIgt~~~y~~An~~ll~~~~-----~~~~~~~~~~i-~~~~~-~-~ 394 (507)
.|++..||.+++|-.-+-..+|+++..+. |..++.++++|...+.+++++|. ...+.+. .++ +.+.. + .
T Consensus 241 Dyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~-q~~~~~r~~IYk~ 319 (673)
T KOG1461|consen 241 DYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGN-QTFSLERRNIYKS 319 (673)
T ss_pred cceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCC-ceeeecccccccC
Confidence 44567889999988888889999999875 99999999999999999999982 2222221 111 11100 0 1
Q ss_pred CCceec-ceeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceE-eeeecCCCcceeeCCCcEEeeeEeCCCCEECCC
Q 010554 395 PPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEI-ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 467 (507)
Q Consensus 395 ~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~ 467 (507)
+.+.+. .|.+. +++||.|+.|+ ++.|.|||| +.||.++.| +|+||.| |+||+||+|++|||+++++|++|
T Consensus 320 ~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~---v~Igdnc~I~~aii~d~v~i~~~ 396 (673)
T KOG1461|consen 320 PDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN---VTIGDNCRIDHAIICDDVKIGEG 396 (673)
T ss_pred ccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC---cEECCCceEeeeEeecCcEeCCC
Confidence 122222 24443 45666666666 556666666 133333333 1334666 66666666666666666666666
Q ss_pred cEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 468 VVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 468 ~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
|++..++++ ..| +|+|+|-+++.+++
T Consensus 397 ~~l~~g~vl------------~~~-VVv~~~~~l~~ns~ 422 (673)
T KOG1461|consen 397 AILKPGSVL------------GFG-VVVGRNFVLPKNSK 422 (673)
T ss_pred cccCCCcEE------------eee-eEeCCCcccccccc
Confidence 666554332 223 55566666665544
No 13
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-42 Score=332.19 Aligned_cols=352 Identities=22% Similarity=0.348 Sum_probs=267.9
Q ss_pred ceEEEEEcCC--CCCcccCCccCCCccceeecCcchhhHHHHHHHHh-cCCCEEEEEeccCchHHHHHHHhcccCCCccc
Q 010554 94 NVAAIILGGG--AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 94 ~~~aVILAaG--~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~-~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
.++||||-|| +||||+||+.+.||||+||+|+ |||.|.++.|.+ .|..+|+++.-|..+.+.+++.+.- ..|
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~----~e~ 76 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQ----QEF 76 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHH----hhc
Confidence 4789999999 6999999999999999999999 999999999998 5999999999998888888875332 123
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
. ..|+++... .++|||++|..+++.+-. ...+.|+|+++|..+++.+.+|++.|+..++.+||+.+.
T Consensus 77 ~-~pvrYL~E~---------~plGtaGgLyhFrdqIl~---g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tk 143 (407)
T KOG1460|consen 77 K-VPVRYLRED---------NPLGTAGGLYHFRDQILA---GSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTK 143 (407)
T ss_pred c-cchhhhccC---------CCCCcccceeehhhHHhc---CCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEE
Confidence 2 125555433 257999999999887742 446789999999999999999999999999999999999
Q ss_pred cCCCCCccceEEEEC-CCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHH---hh-
Q 010554 251 VGESRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR---WR- 325 (507)
Q Consensus 251 ~~~~~~~~~g~v~id-~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~---~~- 325 (507)
+..+++++||-+..| .+|+|+++.|||...- ++++++|+|+|++++|..+-+ +.
T Consensus 144 vs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q~~ 202 (407)
T KOG1460|consen 144 VSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQRQ 202 (407)
T ss_pred ecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHHHH
Confidence 998889999998888 6899999999998652 489999999999999875422 11
Q ss_pred ------------CCCCCch---hhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCcc---cc-CCCC-
Q 010554 326 ------------YPTSNDF---GSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFH---FY-DPKT- 385 (507)
Q Consensus 326 ------------~~~~~d~---~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~---~~-~~~~- 385 (507)
.+...|| .+|+++.++.++++|+|...++|..|.|+-+-+.||+.+|++..... +- .+..
T Consensus 203 ~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~ 282 (407)
T KOG1460|consen 203 DLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQ 282 (407)
T ss_pred hhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCC
Confidence 0111333 36899999999999999999999999999999999999987532110 10 1111
Q ss_pred -CcccCCCcCCCceec-ceeee-ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCC
Q 010554 386 -PFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKN 461 (507)
Q Consensus 386 -~i~~~~~~~~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~n 461 (507)
.|...+.+.|.+++. .++|. |+-||++++|+ +.++.+||| .++ +.|.+|+.+-+||||+.
T Consensus 283 a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sII-------------l~d---~ei~enavVl~sIigw~ 346 (407)
T KOG1460|consen 283 AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESII-------------LDD---AEIEENAVVLHSIIGWK 346 (407)
T ss_pred ceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeee-------------ccC---cEeeccceEEeeeeccc
Confidence 122223233334444 25554 56666666666 456666665 898 89999999999999999
Q ss_pred CEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 462 VKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 462 a~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+.||+++.++.........-+.- .++|.|.++.+++.++
T Consensus 347 s~iGrWaRVe~~pv~~s~~~~~~------a~Tilga~v~v~dev~ 385 (407)
T KOG1460|consen 347 SSIGRWARVEGIPVEPSPNLPFA------ALTILGADVSVEDEVI 385 (407)
T ss_pred ccccceeeecccccccCCCCCcc------eeEEecccceecceeE
Confidence 99999999986533222222211 3466667666666554
No 14
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.2e-41 Score=358.94 Aligned_cols=329 Identities=22% Similarity=0.295 Sum_probs=234.1
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
|++++|||||||.|+||++ .+||||+|++|+ |||+|+|+++.++|++++++++++..+++.+|+.+. .
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-----~--- 68 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-----G--- 68 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-----C---
Confidence 5678999999999999984 789999999999 999999999999999999999999999898888521 0
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
.+.++. +. .++||+++++.+++++++ ..++|++++||+ +...++.++++.|++.++++++++.
T Consensus 69 --~i~~~~--~~-------~~~Gt~~al~~a~~~l~~----~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~ 133 (459)
T PRK14355 69 --DVSFAL--QE-------EQLGTGHAVACAAPALDG----FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTA 133 (459)
T ss_pred --ceEEEe--cC-------CCCCHHHHHHHHHHHhhc----cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEE
Confidence 134432 21 136999999999998852 246899999998 5578899999999988888888887
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC--
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~-- 327 (507)
+..+ +..||.+.+|++|+|..+.|||...... ..++++++|+|+|++++|.++++...+
T Consensus 134 ~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 194 (459)
T PRK14355 134 RLEN--PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGNDN 194 (459)
T ss_pred EcCC--CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCccc
Confidence 7655 4579999998889999999987421100 013688999999999987676765332
Q ss_pred -CCCchhhhhHHhhhhc-CcEEEEEeccE--EEecCCHHHHHHHHHHhhccCC------CccccCCCC-CcccCCCcCCC
Q 010554 328 -TSNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKESP------AFHFYDPKT-PFYTSPRFLPP 396 (507)
Q Consensus 328 -~~~d~~~dil~~li~~-~~V~~~~~~gy--w~dIgt~~~y~~An~~ll~~~~------~~~~~~~~~-~i~~~~~~~~p 396 (507)
....+.+++++.++++ .++++|.+++| |.|+|||++|++|++.++.... ...++++.. .+...+.+.+.
T Consensus 195 ~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~ 274 (459)
T PRK14355 195 AQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRD 274 (459)
T ss_pred cCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCC
Confidence 1335578999999987 47999999988 9999999999999886654321 111233322 12233333444
Q ss_pred ceec-ceeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCc
Q 010554 397 TKID-NCRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDV 468 (507)
Q Consensus 397 ~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~ 468 (507)
+.|+ +|.|. +++||++|.|+ ++.|.+|+| ..++.++.+. ++++++ +.||.+++|+ ++.|+++++||+++
T Consensus 275 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~---~~ig~~~~i~~~~~i~~~~~ig~~~ 351 (459)
T PRK14355 275 TTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDD---VAIGPMAHLRPGTELSAHVKIGNFV 351 (459)
T ss_pred CEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCC---CEECCCCEECCCCEeCCCCEECCCc
Confidence 4444 35554 56777777776 567777666 2344444442 444544 4455555444 34444444444444
Q ss_pred E
Q 010554 469 V 469 (507)
Q Consensus 469 ~ 469 (507)
.
T Consensus 352 ~ 352 (459)
T PRK14355 352 E 352 (459)
T ss_pred c
Confidence 3
No 15
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8.1e-41 Score=359.42 Aligned_cols=368 Identities=17% Similarity=0.199 Sum_probs=260.4
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
|.++.|||||||.|+||+| .+||+|+|++|+ |||+|+|++|.++|+++++|++++..+.+.+++... ..
T Consensus 2 ~~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~--~~----- 70 (482)
T PRK14352 2 PRPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAEL--AP----- 70 (482)
T ss_pred CCCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhcc--CC-----
Confidence 5678999999999999997 689999999999 999999999999999999999999888888777421 00
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
.+.++. + ++..||+++++.++.++.+ ...++|+|++||+ +...++.++++.|++.++++++++.
T Consensus 71 --~~~~~~--~-------~~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~ 136 (482)
T PRK14352 71 --EVDIAV--Q-------DEQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTT 136 (482)
T ss_pred --ccEEEe--C-------CCCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 123332 2 1236999999999988742 1246799999998 3457899999999988888888877
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC-
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~- 328 (507)
+.++ +..||.+..|++|+|.+|.|||.....+ ....++++|+|+|++++|..+++...+.
T Consensus 137 ~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~ 197 (482)
T PRK14352 137 TLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFDAAVLRSALARLSSDN 197 (482)
T ss_pred ecCC--CCCCCEEEECCCCCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEEHHHHHHHHHhhCccc
Confidence 7665 5679998888889999999998743210 0125789999999999998777654332
Q ss_pred --CCchhhhhHHhhhhcC-cEEEEEeccEEEecCCHHHH------HHHHHHhhccCC--CccccC-------CCCCcccC
Q 010554 329 --SNDFGSEIIPAAIMEH-DVQAYIFRDYWEDIGTIKSF------YEANMALTKESP--AFHFYD-------PKTPFYTS 390 (507)
Q Consensus 329 --~~d~~~dil~~li~~~-~V~~~~~~gyw~dIgt~~~y------~~An~~ll~~~~--~~~~~~-------~~~~i~~~ 390 (507)
...++.|+++.+++++ +|++|.+++||.|+|+++.| ..+|+.++..+. ....++ +...+...
T Consensus 198 ~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~ 277 (482)
T PRK14352 198 AQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRD 277 (482)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCC
Confidence 3455789999999874 89999999999999999888 566665554321 111122 22222222
Q ss_pred CCcC------------CCceec-ceeeeceEEcCCcEEccceEeeeeE---Eeec------------------cCceEe-
Q 010554 391 PRFL------------PPTKID-NCRIKDAIISHGCFLRECTVEHSIV---DYYQ------------------TESEIA- 435 (507)
Q Consensus 391 ~~~~------------~p~~i~-~~~I~~siIg~gc~I~~~~I~~Sii---~~vg------------------~~~~i~- 435 (507)
+++. +.++|+ +|.|.+|+||++|.|+++.+.+++| ..+| .++++.
T Consensus 278 ~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~ 357 (482)
T PRK14352 278 VVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKN 357 (482)
T ss_pred cEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcc
Confidence 2222 222232 3555566666666665444555555 1222 223332
Q ss_pred eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecC-------CCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK-------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~-------~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
++++++ +.|+..+.+.+|+||++|.||.++++.+. ..+++..+...+..|.+| +.||+++.|++|++|
T Consensus 358 ~~I~~~---~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~-~~Ig~~~~igags~v 432 (482)
T PRK14352 358 ATIGRG---TKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAP-VTVGDGAYTGAGTVI 432 (482)
T ss_pred cEECCC---cEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCC-CEECCCcEECCCCEE
Confidence 445555 55666666778888899999999888753 456666666666666666 678888888888764
No 16
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.9e-40 Score=355.80 Aligned_cols=233 Identities=20% Similarity=0.267 Sum_probs=183.6
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
.+|+|||||||.|+||+| .+||+|+|++|+ |||+|+|++|.++|+++|+|+++++.+.+.+|+.. .+
T Consensus 6 ~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~--------~~- 72 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG--------SG- 72 (481)
T ss_pred CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc--------CC-
Confidence 469999999999999997 589999999999 99999999999999999999999998888877741 11
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
+.++. +. +++||+++++.++.+++. ..++|+|++||+ +...++.++++.|+++++++|+++.+
T Consensus 73 --i~~v~--~~-------~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~ 137 (481)
T PRK14358 73 --VAFAR--QE-------QQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGE 137 (481)
T ss_pred --cEEec--CC-------CcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEE
Confidence 44443 21 246999999999887741 235799999998 55778999999999999999999888
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC---C
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~---~ 327 (507)
+++ +..||++.+|++|+|.+|.|||..+... ....++++|+|+|+++++ ++++... +
T Consensus 138 ~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~-~~~~~i~~~~~ 197 (481)
T PRK14358 138 LPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAP-ELARRIGNDNK 197 (481)
T ss_pred cCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHH-HHHHhcCCCcc
Confidence 775 4569999999889999999998643210 012468999999997653 2333321 2
Q ss_pred CCCchhhhhHHhhhhcC-cEEEEEeccEEEecCCHHHHHHHHHH-hhc
Q 010554 328 TSNDFGSEIIPAAIMEH-DVQAYIFRDYWEDIGTIKSFYEANMA-LTK 373 (507)
Q Consensus 328 ~~~d~~~dil~~li~~~-~V~~~~~~gyw~dIgt~~~y~~An~~-ll~ 373 (507)
..+.+++|+++.+++++ ++++|.++++|..++...+|+.++++ +++
T Consensus 198 ~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~ 245 (481)
T PRK14358 198 AGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLR 245 (481)
T ss_pred CCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHH
Confidence 22345679999998874 79999999999999988888888765 443
No 17
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.9e-39 Score=344.01 Aligned_cols=358 Identities=18% Similarity=0.249 Sum_probs=260.7
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
.++|||||||.||||+| .+||||+||+|+ |||+|+++.|..+ +++|+|++++..+++.+|+.+.+ .
T Consensus 2 ~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~-------~-- 67 (430)
T PRK14359 2 KLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF-------P-- 67 (430)
T ss_pred CccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC-------C--
Confidence 36899999999999997 799999999999 9999999999987 78999999999999998886321 1
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCC
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 253 (507)
.++++...+ ..+.||+++++.+. ...++|++++||..+. ..+.++.+.+.++++++.+.++++
T Consensus 68 ~v~~~~~~~-------~~~~gt~~al~~~~--------~~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~ 130 (430)
T PRK14359 68 GVIFHTQDL-------ENYPGTGGALMGIE--------PKHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLAD 130 (430)
T ss_pred ceEEEEecC-------ccCCCcHHHHhhcc--------cCCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCC
Confidence 145543221 12369999998742 1247899999998442 235566676777888888888765
Q ss_pred CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC---CCC
Q 010554 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSN 330 (507)
Q Consensus 254 ~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~---~~~ 330 (507)
+..||.+..| +|+|..+.|+|...... ...+++++|+|+|++++|.++++.... ...
T Consensus 131 --~~~~g~v~~d-~g~v~~i~e~~~~~~~~-----------------~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e 190 (430)
T PRK14359 131 --PKGYGRVVIE-NGQVKKIVEQKDANEEE-----------------LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKE 190 (430)
T ss_pred --CccCcEEEEc-CCeEEEEEECCCCCccc-----------------ccceEEEeEEEEEEHHHHHHHHHhcCcccccCc
Confidence 4569988775 68999999987532100 013678999999999999877654321 133
Q ss_pred chhhhhHHhhhhc-CcEEEEEec-cEEEecCCHHHHHHHHHHhhccCCC-c-----------c-ccCCCCCcccCCCcCC
Q 010554 331 DFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKESPA-F-----------H-FYDPKTPFYTSPRFLP 395 (507)
Q Consensus 331 d~~~dil~~li~~-~~V~~~~~~-gyw~dIgt~~~y~~An~~ll~~~~~-~-----------~-~~~~~~~i~~~~~~~~ 395 (507)
.+.+++++.+++. .++++|.++ ++|.||+||+||+.|+..+..+... + . +..++..+...+.+.+
T Consensus 191 ~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~ 270 (430)
T PRK14359 191 YYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEE 270 (430)
T ss_pred eehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECC
Confidence 4567888888876 789999987 6899999999999998766543211 0 0 1122222333333445
Q ss_pred Cceec-ceeeeceEEcCCcEEccceEeeeeE--------------EeeccCceEe-eeecCCCcceeeCCCcEEeeeEeC
Q 010554 396 PTKID-NCRIKDAIISHGCFLRECTVEHSIV--------------DYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIID 459 (507)
Q Consensus 396 p~~i~-~~~I~~siIg~gc~I~~~~I~~Sii--------------~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~nsIIg 459 (507)
+++|+ ++.|.+++||++|.|+++.|++|+| ..+|.+++|. +++ ++ ++||+++.|.+|+||
T Consensus 271 ~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~-~~---~~i~~~~~i~d~~Ig 346 (430)
T PRK14359 271 GVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKL-NG---VKAGHLSYLGDCEID 346 (430)
T ss_pred CCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEe-cc---ccccccccccCCEEC
Confidence 55664 4666778888888887677777776 2456666664 555 66 789999999999999
Q ss_pred CCCEECCCcEEecC-------CCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 460 KNVKIGKDVVIVNK-------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 460 ~na~Ig~~~~i~~~-------~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
++|.||.++++.+. ..++++...+.+..|..| +.||+++.|++|++|
T Consensus 347 ~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~-~~ig~~~~i~~g~~v 400 (430)
T PRK14359 347 EGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAP-VNIEDNVLIAAGSTV 400 (430)
T ss_pred CCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCC-cEECCCCEECCCCEE
Confidence 99999999999865 345566666666666666 677888888888864
No 18
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.5e-39 Score=323.76 Aligned_cols=366 Identities=22% Similarity=0.280 Sum_probs=273.9
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
.+.+||||||.||||+ +..||.|.||+|+ ||++|+++.+...+.+++++|++|..+.+.+.+.+. ..
T Consensus 2 ~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-------~~-- 68 (460)
T COG1207 2 SLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-------DD-- 68 (460)
T ss_pred CceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-------cC--
Confidence 5789999999999999 6899999999999 999999999999999999999999999998888521 01
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-cCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~-~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
++++ .|.. .+|||||+.+++++|.+ ..+.++||++||+ |. ...|+++++.|...++.+|++....
T Consensus 69 -v~~v--~Q~e-------qlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~ 135 (460)
T COG1207 69 -VEFV--LQEE-------QLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAEL 135 (460)
T ss_pred -ceEE--Eecc-------cCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEc
Confidence 2322 1321 27999999999999942 2345799999999 44 4557889999999999999999988
Q ss_pred CCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC---C
Q 010554 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 328 (507)
Q Consensus 252 ~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~---~ 328 (507)
++ |..||.+..+++|+|..+.|..+..+. .+.-..+++|+|+|+...|.++|..... .
T Consensus 136 ~d--P~GYGRIvr~~~g~V~~IVE~KDA~~e-----------------ek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaq 196 (460)
T COG1207 136 DD--PTGYGRIVRDGNGEVTAIVEEKDASEE-----------------EKQIKEINTGIYAFDGAALLRALPKLSNNNAQ 196 (460)
T ss_pred CC--CCCcceEEEcCCCcEEEEEEcCCCCHH-----------------HhcCcEEeeeEEEEcHHHHHHHHHHhcccccc
Confidence 87 788999999999999999996654321 1123579999999999988888876433 3
Q ss_pred CCchhhhhHHhhhhc-CcEEEEEeccE--EEecCCHHHHHHHHHHhhccC------CCccccCCCC-------CcccCCC
Q 010554 329 SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPKT-------PFYTSPR 392 (507)
Q Consensus 329 ~~d~~~dil~~li~~-~~V~~~~~~gy--w~dIgt~~~y~~An~~ll~~~------~~~~~~~~~~-------~i~~~~~ 392 (507)
.+.|++|++..+-.+ .+|.++..+++ ...+|+-..+-++++.+.++. ....+.||.. .+..+..
T Consensus 197 gEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~Dvv 276 (460)
T COG1207 197 GEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVV 276 (460)
T ss_pred CcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceE
Confidence 567888988766544 78999988866 678999999999998776543 2233444443 2223333
Q ss_pred cCCCcee------------c-ceeeeceEEcCCcEEcc-ceEeeeeE---------------------EeeccCceEe-e
Q 010554 393 FLPPTKI------------D-NCRIKDAIISHGCFLRE-CTVEHSIV---------------------DYYQTESEIA-S 436 (507)
Q Consensus 393 ~~~p~~i------------~-~~~I~~siIg~gc~I~~-~~I~~Sii---------------------~~vg~~~~i~-s 436 (507)
+.|.+.+ + +|.|+||.|++||.|.. |.+++|.| +.+|+++|+. +
T Consensus 277 I~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a 356 (460)
T COG1207 277 IEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKA 356 (460)
T ss_pred EecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecc
Confidence 3443332 2 25555666666666653 55666666 3677777774 7
Q ss_pred eecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccC-CCCCCCeEEcCCe-----EEEcCCCEeCCCccC
Q 010554 437 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA-DRPELGFYIRSGI-----TIIMEKATIEDGMVI 507 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~-~~~~~~~~i~~g~-----~vig~~~~i~~gt~i 507 (507)
.|++| ++++.-++|.++-||+++-||.+++..|.|+.--- ..++++..|.+.- +.||+++.|++||+|
T Consensus 357 ~ig~g---sKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStI 430 (460)
T COG1207 357 TIGKG---SKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 430 (460)
T ss_pred cccCC---ccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceE
Confidence 77777 77888888888999999999999999999876443 4445555564432 467888888888875
No 19
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.3e-39 Score=345.96 Aligned_cols=365 Identities=18% Similarity=0.239 Sum_probs=240.6
Q ss_pred CCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCccc
Q 010554 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 91 ~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
.|..|+|||||||.|+||++ .+||||+|++|+ |||+|++++|.++|+++|++++++..+++.+|+.. .
T Consensus 2 ~~~~~~aiIlAaG~gtRl~~---~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~-----~--- 69 (456)
T PRK09451 2 LNSAMSVVILAAGKGTRMYS---DLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLAD-----E--- 69 (456)
T ss_pred CCCCceEEEEcCCCCCcCCC---CCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhcc-----C---
Confidence 35679999999999999983 699999999999 99999999999999999999999988888777741 1
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISC 248 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~ 248 (507)
.+.++... ..+||+++++.++.++. ..++|++++||+ +.+.++.++++.|++.+ +++++
T Consensus 70 ---~~~~i~~~---------~~~Gt~~al~~a~~~l~-----~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~ 130 (456)
T PRK09451 70 ---PLNWVLQA---------EQLGTGHAMQQAAPFFA-----DDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLT 130 (456)
T ss_pred ---CcEEEECC---------CCCCcHHHHHHHHHhhc-----cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEE
Confidence 13333211 13699999999988774 136899999998 55788999999886554 45666
Q ss_pred EEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC-
Q 010554 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP- 327 (507)
Q Consensus 249 ~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~- 327 (507)
.+.++ +..||++.. ++++|.+|.|||.....+ ...+++++|+|+|+++.|.++++...+
T Consensus 131 ~~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~ 190 (456)
T PRK09451 131 VKLDN--PTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNN 190 (456)
T ss_pred EEcCC--CCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCc
Confidence 66554 567999754 578999999998632110 012579999999999999877775433
Q ss_pred --CCCchhhhhHHhhhhc-CcEEEEE------eccE--EEecCCHHHHHHHHHH--hhcc-----CCC-cc---------
Q 010554 328 --TSNDFGSEIIPAAIME-HDVQAYI------FRDY--WEDIGTIKSFYEANMA--LTKE-----SPA-FH--------- 379 (507)
Q Consensus 328 --~~~d~~~dil~~li~~-~~V~~~~------~~gy--w~dIgt~~~y~~An~~--ll~~-----~~~-~~--------- 379 (507)
....++.|+++.++++ .+|++|. ++|| |.|++++++|+++|+. ++.. .|. ..
T Consensus 191 ~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~ 270 (456)
T PRK09451 191 NAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGR 270 (456)
T ss_pred cccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECC
Confidence 2445678999999987 5899996 4676 7889999999999852 3221 111 11
Q ss_pred --ccCCCCCcccCCCcCCCceec-ceeeeceEEcCCcEEc-cceEeeeeE---EeeccCceEe--eeecCCCc-------
Q 010554 380 --FYDPKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA--SLLAEGKV------- 443 (507)
Q Consensus 380 --~~~~~~~i~~~~~~~~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~--s~l~~g~~------- 443 (507)
.+.+...+...+.+.+.+.|+ +|.|.+|+||++|.|+ +|.+++|+| ..+|.++.|. +.++++..
T Consensus 271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i 350 (456)
T PRK09451 271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM 350 (456)
T ss_pred CCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence 111112222222233334444 3666677777777776 566666666 2344444442 33333300
Q ss_pred -c------eeeCCCcEEeeeEeCCCCEECCCcEEecCCC-------CccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 444 -P------IGVGRNTKIRNCIIDKNVKIGKDVVIVNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 444 -~------~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~-------~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
. +.|+..+.+.+|.||++|.||+++++.+.++ +++......+..+.+| +.||++++|++|++|
T Consensus 351 ~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~-~~ig~~~~i~~gs~v 427 (456)
T PRK09451 351 KKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VTVGKGATIGAGTTV 427 (456)
T ss_pred eceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCC-cEECCCCEECCCCEE
Confidence 0 3334444444556666666666666654322 3333333333333344 455666666666653
No 20
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.8e-40 Score=313.04 Aligned_cols=233 Identities=26% Similarity=0.432 Sum_probs=200.1
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCch-HHHHHHHhcccCCCcccCCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA-SLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~-~l~~~l~~~~~~~~~~~~~~ 173 (507)
|+|||||||.||||+|+|...||+|+||.+| |||+|+|+.|..+||++|.|+++++.. .++++ +++|++|+
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~l-----lGdgs~~g-- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKEL-----LGDGSDFG-- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhh-----hcCccccC--
Confidence 7999999999999999999999999999999 999999999999999999999988544 44333 36777887
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCC
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 253 (507)
+.+.+..|+. +.|.|+|+..+.+++. +++|+++.||.++.-++.++++.+.+++.++++++.++++
T Consensus 73 -v~itY~~Q~~-------p~GlA~Av~~a~~fv~------~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~d 138 (286)
T COG1209 73 -VDITYAVQPE-------PDGLAHAVLIAEDFVG------DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD 138 (286)
T ss_pred -cceEEEecCC-------CCcHHHHHHHHHhhcC------CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCC
Confidence 5555555643 4799999999998885 4899999999988779999999999988899999999997
Q ss_pred CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCC--Cc
Q 010554 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS--ND 331 (507)
Q Consensus 254 ~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~--~d 331 (507)
|++||++++|++|+|+.+.|||+.+. |+++-+|+|+|+++++. +++...|+. +-
T Consensus 139 --P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGEl 194 (286)
T COG1209 139 --PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGEL 194 (286)
T ss_pred --cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCce
Confidence 77899999999999999999999874 58999999999999995 567666642 22
Q ss_pred hhhhhHHhhhhcC-cEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 332 FGSEIIPAAIMEH-DVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 332 ~~~dil~~li~~~-~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
-++|+++.+++++ .+......|.|.|.||+++|++|++.++.
T Consensus 195 EITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 195 EITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred EehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 3578899988775 55556777899999999999999998876
No 21
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=2.6e-39 Score=325.32 Aligned_cols=243 Identities=18% Similarity=0.267 Sum_probs=192.6
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-c------
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-F------ 164 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~------ 164 (507)
|.+|+|||||||.||||+|+|.++||||+||+|+ |||+|+|++|.++|+++|+|+++|+.+++.+|+...+ +
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 4589999999999999999999999999999999 9999999999999999999999999999999986432 1
Q ss_pred ----------CCCcccCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc-------
Q 010554 165 ----------GNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR------- 227 (507)
Q Consensus 165 ----------~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~------- 227 (507)
..+.+++ +++....| .+++|||+|+++++++++ +++|+|++||++++
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~i~~~~q-------~~~lGtg~Av~~a~~~l~------~~~flvv~gD~l~~~~~~~~~ 143 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPG---VTIMNVRQ-------AQPLGLGHSILCARPVVG------DNPFVVVLPDIIIDDATADPL 143 (297)
T ss_pred hcchhhhhhhhhcCCCC---ceEEEeeC-------CCcCchHHHHHHHHHHhC------CCCEEEEECCeeccccccccc
Confidence 0000122 23322233 235899999999999885 36899999999987
Q ss_pred -CCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEE----CCCCc---EEEEEeCCCccccccccccccccCCCcccc
Q 010554 228 -MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI----DNMGR---IAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (507)
Q Consensus 228 -~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~i----d~~gr---V~~~~eKp~~~~~~~~~~~~~~~~~~~~~~ 299 (507)
+++.++++.|.++++.+ +++.++.+ .++.||++.+ |++|+ |.++.|||..+..
T Consensus 144 ~~~l~~li~~~~~~~~~~-~~~~~~~~-~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------- 204 (297)
T TIGR01105 144 RYNLAAMIARFNETGRSQ-VLAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred hhHHHHHHHHHHHhCCcE-EEEEEcCC-CCccceEEEecccccCCCCeeeEeEEEECCCCccc-----------------
Confidence 58999999998777766 44444432 3788999998 44564 5899999964321
Q ss_pred ccCCceeeeEEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhh
Q 010554 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 300 ~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll 372 (507)
..++++++|+|+|++++|.. ++...+. .....+++++.+++++++++|.++|+|+|||+|++|.+||.++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~-l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 205 -LDSDLMAVGRYVLSADIWAE-LERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCcCEEEEEEEEECHHHHHH-HhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 12478999999999999874 4543332 22346799999999999999999999999999999999998863
No 22
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=2.6e-39 Score=317.57 Aligned_cols=241 Identities=34% Similarity=0.586 Sum_probs=194.7
Q ss_pred EEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEE-EEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI-FVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I-~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
+|||||||.||||+|||.++||||+|++|+||||+|+|++|.++|++++ +|+++++.+++.+|+.+.+ +++ ..
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~-----~~~-~~ 74 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGY-----KFG-VK 74 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSG-----GGT-EE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccc-----ccc-cc
Confidence 6999999999999999999999999999999999999999999999995 5555688888998886432 232 12
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 254 (507)
++++. |.. ..|||+||+++..+++.. ...++|+|++||++++.++.++++.|+++++++++++...+.+
T Consensus 75 i~~i~--~~~-------~~Gta~al~~a~~~i~~~--~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 143 (248)
T PF00483_consen 75 IEYIV--QPE-------PLGTAGALLQALDFIEEE--DDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVE 143 (248)
T ss_dssp EEEEE--ESS-------SSCHHHHHHHTHHHHTTS--EE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESS
T ss_pred ceeee--ccc-------ccchhHHHHHHHHHhhhc--cccceEEEEeccccccchhhhHHHhhhcccccccccccccccc
Confidence 44443 322 259999999999998630 0023599999999999999999999999998554444444444
Q ss_pred CCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHH--hhCCCCCch
Q 010554 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR--WRYPTSNDF 332 (507)
Q Consensus 255 ~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~--~~~~~~~d~ 332 (507)
.++.||++.+|++|+|.+|.|||..+.. +.++++|+|+|++++|..+++ .......++
T Consensus 144 ~~~~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~ 203 (248)
T PF00483_consen 144 DPSRYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGEDF 203 (248)
T ss_dssp GGGGSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSHH
T ss_pred ccccceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhhH
Confidence 5788999999999999999999986531 368999999999999987755 223346778
Q ss_pred hhhhHHhhhhcC-cEEEEEecc--EEEecCCHHHHHHHHHHhhc
Q 010554 333 GSEIIPAAIMEH-DVQAYIFRD--YWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 333 ~~dil~~li~~~-~V~~~~~~g--yw~dIgt~~~y~~An~~ll~ 373 (507)
..++++.+++++ .+.+|.+++ +|.|||||++|++||+.+++
T Consensus 204 l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 204 LTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 899999999886 556789998 79999999999999999875
No 23
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=1.2e-38 Score=339.83 Aligned_cols=359 Identities=19% Similarity=0.262 Sum_probs=241.8
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|+|||||||.|+||+| .+||+|+||+|+ |||+|++++|.++|+++++|++++..+.+.+++.+ ++
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~--------~~--- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN--------RD--- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC--------CC---
Confidence 7899999999999997 799999999999 99999999999999999999999998888877742 11
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
+.++...+ ++||+++++.++.++++ .++|++++||+ +...++.++++.|.+. .+++++.+.+
T Consensus 66 i~~~~~~~---------~~G~~~ai~~a~~~l~~-----~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~ 129 (451)
T TIGR01173 66 VNWVLQAE---------QLGTGHAVLQALPFLPD-----DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLP 129 (451)
T ss_pred cEEEEcCC---------CCchHHHHHHHHHhcCC-----CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecC
Confidence 33332111 25999999999888742 36899999998 4466789999998764 3677776664
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC---C
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~---~ 329 (507)
+ +..|+.+..|++|+|..+.|||...... ...+.+++|+|+|++++|.++++...+. .
T Consensus 130 ~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~ 190 (451)
T TIGR01173 130 D--PTGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQG 190 (451)
T ss_pred C--CCCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhcccccccC
Confidence 3 5569999998889999999987532110 0125789999999999987776653321 2
Q ss_pred CchhhhhHHhhhhc-CcEEEEEeccE--EEecCCHHHHHHHHHHhhccCCC------ccc-------c------CCCCCc
Q 010554 330 NDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKESPA------FHF-------Y------DPKTPF 387 (507)
Q Consensus 330 ~d~~~dil~~li~~-~~V~~~~~~gy--w~dIgt~~~y~~An~~ll~~~~~------~~~-------~------~~~~~i 387 (507)
..+..++++.++++ .++++|.+++| |.+++++++|..++..+..+.+. ..+ . .++..+
T Consensus 191 e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i 270 (451)
T TIGR01173 191 EYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEI 270 (451)
T ss_pred cEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEE
Confidence 34567899999877 57999999988 99999999999887655432110 000 0 111222
Q ss_pred ccCCCcCCCc------eec-ceeeeceEEcCCcEEc-cceEeeeeE---EeeccCceEe--eeecCCCcceeeCCCcEEe
Q 010554 388 YTSPRFLPPT------KID-NCRIKDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA--SLLAEGKVPIGVGRNTKIR 454 (507)
Q Consensus 388 ~~~~~~~~p~------~i~-~~~I~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~ 454 (507)
...+.+.+++ .|+ +|.|.+++||++|.|+ +|.|.+++| +.+|.++.|. ++++++ |.||+++.+.
T Consensus 271 ~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~---~~Ig~~~~i~ 347 (451)
T TIGR01173 271 DPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAG---VHIGNFVETK 347 (451)
T ss_pred cCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCC---cEEccceeec
Confidence 2222222223 332 2555667777777776 566777666 2556666663 666666 5666655555
Q ss_pred eeEe-----------------CCCCEECCCcEEecCC-------CCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 455 NCII-----------------DKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 455 nsII-----------------g~na~Ig~~~~i~~~~-------~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+++| |+++.||.++++.+.+ .+++......+..+.+| +.||++++|++|+++
T Consensus 348 ~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~-~~ig~~~~i~~g~~v 423 (451)
T TIGR01173 348 NARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAP-VKVGDGATIAAGSTV 423 (451)
T ss_pred CcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECC-cEECCCCEEccCCEE
Confidence 4444 4444444444444321 22222233333333334 567888888877764
No 24
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-40 Score=323.58 Aligned_cols=343 Identities=20% Similarity=0.312 Sum_probs=245.2
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEecc-CchHHHHHHHhcccCCCccc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQF-NSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~-~~~~l~~~l~~~~~~~~~~~ 170 (507)
|.++||||+|||.||||--+|.+.|||||||+|+ |||+|+|++|.++|+++|+|++.. ....++..|...+ ....+
T Consensus 7 ~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~-~l~~~- 83 (433)
T KOG1462|consen 7 MSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNI-DLKKR- 83 (433)
T ss_pred hHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCC-ccccc-
Confidence 6689999999999999999999999999999999 999999999999999999999987 3445555554332 11101
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
...+++-...+. -.|||++||.....+. .+||||++||.++++++..+++++|..++...+++..
T Consensus 84 -~~~v~ip~~~~~--------d~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~ 148 (433)
T KOG1462|consen 84 -PDYVEIPTDDNS--------DFGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGN 148 (433)
T ss_pred -ccEEEeeccccc--------ccCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhcc
Confidence 012333322221 1699999999988775 3699999999999999999999999887655544432
Q ss_pred cCC---------CCCccceEEEECCC-CcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHH
Q 010554 251 VGE---------SRASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (507)
Q Consensus 251 ~~~---------~~~~~~g~v~id~~-grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ 320 (507)
... .....+.++.++++ +|+. |.... ......+.+.+++|+..|+... .+.+.++++|+|+.++++.
T Consensus 149 ~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~-y~~~~-~d~~~~l~i~~slL~~~prltl-~t~L~dahiY~~k~~v~d~ 225 (433)
T KOG1462|consen 149 ALSEVPIPGQKGKKKQARDVIGINEDTERLA-YSSDS-ADEEEPLVIRKSLLWNHPRLTL-TTKLVDAHIYVFKHWVIDL 225 (433)
T ss_pred ccccccccCcccccccccceeeeccccceeE-EeecC-CcCCCceehhhhhhhcCCceEE-eccccceeeeeeHHHHHHH
Confidence 211 11123556666664 4544 43322 2233467888999998887543 5689999999999999964
Q ss_pred HHHhhCCCCCchhhhhHHhhhhc---------------------------------CcEEEEEec--cEEEecCCHHHHH
Q 010554 321 LLRWRYPTSNDFGSEIIPAAIME---------------------------------HDVQAYIFR--DYWEDIGTIKSFY 365 (507)
Q Consensus 321 ll~~~~~~~~d~~~dil~~li~~---------------------------------~~V~~~~~~--gyw~dIgt~~~y~ 365 (507)
|+.. +...+|-.+++|.++++ -++++|... .-+.+++|.-.|+
T Consensus 226 -l~~~-~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~ 303 (433)
T KOG1462|consen 226 -LSEK-ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYM 303 (433)
T ss_pred -HhcC-CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHH
Confidence 4422 23344555666665532 245555554 4588999999999
Q ss_pred HHHH--HhhccCCCccccC----CCCCcccCCCcCCCceec-ceeeeceEEcCCcEEc-cceEeeeeEEeeccCceEeee
Q 010554 366 EANM--ALTKESPAFHFYD----PKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVDYYQTESEIASL 437 (507)
Q Consensus 366 ~An~--~ll~~~~~~~~~~----~~~~i~~~~~~~~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~ 437 (507)
++|+ .+..-.+.-.+.. ....+.....+.+.++|+ ++.|+.|+||++|.|+ .++|.+|++
T Consensus 304 eiN~~k~~~~l~~e~~~~k~~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSil------------ 371 (433)
T KOG1462|consen 304 EINRDKKLKKLCSEAKFVKNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSIL------------ 371 (433)
T ss_pred hhhHHHHHHHhccccccccchhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEe------------
Confidence 9994 3322111111111 112223345566778887 6888888888888888 578888776
Q ss_pred ecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecC
Q 010554 438 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 438 l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~ 473 (507)
|+| +.||+|+.|+|||||.+|.||+++.+.||
T Consensus 372 -m~n---V~vg~G~~IensIIg~gA~Ig~gs~L~nC 403 (433)
T KOG1462|consen 372 -MDN---VVVGDGVNIENSIIGMGAQIGSGSKLKNC 403 (433)
T ss_pred -ecC---cEecCCcceecceecccceecCCCeeeee
Confidence 999 99999999999999999999999999995
No 25
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.8e-38 Score=335.87 Aligned_cols=328 Identities=15% Similarity=0.227 Sum_probs=224.4
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
.+.|||||||.||||+ ..+||+|+|++|+ |||+|++++|...++++|+|++++..+.+.+++. . .
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~-----~---~--- 69 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFP-----D---E--- 69 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcc-----c---c---
Confidence 5889999999999997 5799999999999 9999999999999999999999998877765553 1 0
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
.++++.... ..||+++++.+++++++ ...++|++++||+ +...++.++++.|+ ++++++++.++
T Consensus 70 ~~~~v~~~~---------~~Gt~~al~~a~~~l~~---~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~ 135 (456)
T PRK14356 70 DARFVLQEQ---------QLGTGHALQCAWPSLTA---AGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTL 135 (456)
T ss_pred CceEEEcCC---------CCCcHHHHHHHHHHHhh---cCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEc
Confidence 134443211 26999999999988863 1247899999998 34567899998886 66788888877
Q ss_pred CCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC---C
Q 010554 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 328 (507)
Q Consensus 252 ~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~---~ 328 (507)
++ +..||++.. ++|+|.++.|||...... ....+.++++|+|+|++++|..+++...+ .
T Consensus 136 ~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~~---------------~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~ 197 (456)
T PRK14356 136 PD--PGAYGRVVR-RNGHVAAIVEAKDYDEAL---------------HGPETGEVNAGIYYLRLDAVESLLPRLTNANKS 197 (456)
T ss_pred CC--CCCceEEEE-cCCeEEEEEECCCCChHH---------------hhhhcCeEEEEEEEEEHHHHHHHHHhccCcccC
Confidence 76 567998877 578999999988632100 00013578999999999998777664322 2
Q ss_pred CCchhhhhHHhhhhc-CcEEEEEecc--EEEecCCHHHHHHHHHHhhccCCCccccCCCCCcc--------cCCCcCCCc
Q 010554 329 SNDFGSEIIPAAIME-HDVQAYIFRD--YWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFY--------TSPRFLPPT 397 (507)
Q Consensus 329 ~~d~~~dil~~li~~-~~V~~~~~~g--yw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~--------~~~~~~~p~ 397 (507)
.+.+.+++++.+++. .++++|.+.+ +|.+|+||++|.+|+..+..+... .++.+...+. ..+.+.+.+
T Consensus 198 ~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~-~~~~~~~~i~~~~~~~i~~~~~i~~~~ 276 (456)
T PRK14356 198 GEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVE-KHLESGVLIHAPESVRIGPRATIEPGA 276 (456)
T ss_pred CcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHH-HHHHcCCEEeCCCcEEECCCcEECCCC
Confidence 334567889888765 5799999876 579999999999998777654211 1122222221 122233333
Q ss_pred eec-ceeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcE
Q 010554 398 KID-NCRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVV 469 (507)
Q Consensus 398 ~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~ 469 (507)
.+. .|.|. +++||+||.|+ +|.|++|+| ..++.++.+. ++|+++ +.||++++|. +++|+++++||.++.
T Consensus 277 ~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~---~~Ig~~~~i~~~~~ig~~~~ig~~~~ 353 (456)
T PRK14356 277 EIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDG---CSVGPYARLRPGAVLEEGARVGNFVE 353 (456)
T ss_pred EEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecc---cEECCceEECCCCEECCCCEecCCce
Confidence 332 23332 45666666665 566666665 2445555553 555555 5566666665 456666666665555
Q ss_pred Eec
Q 010554 470 IVN 472 (507)
Q Consensus 470 i~~ 472 (507)
|.+
T Consensus 354 i~~ 356 (456)
T PRK14356 354 MKK 356 (456)
T ss_pred eee
Confidence 544
No 26
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=1.4e-38 Score=320.61 Aligned_cols=245 Identities=18% Similarity=0.263 Sum_probs=195.4
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cC-----
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG----- 165 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~----- 165 (507)
|++|+|||||||.||||+|||..+||||+||+|+ |||+|+|++|.++||++|+|++++..+++.+|+...| +.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 5789999999999999999999999999999999 9999999999999999999999999999999996432 10
Q ss_pred -----------CCcccCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc-------
Q 010554 166 -----------NGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR------- 227 (507)
Q Consensus 166 -----------~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~------- 227 (507)
....++ +++....|.. ++|||+|++++++++. .++|+|++||++++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~~-------~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQGQ-------PLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecCC-------cCchHHHHHHHHHHcC------CCCEEEEECCeeccCcccccc
Confidence 000011 2332223321 3799999999999884 36899999999986
Q ss_pred -CCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEEC----CCC---cEEEEEeCCCccccccccccccccCCCcccc
Q 010554 228 -MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID----NMG---RIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (507)
Q Consensus 228 -~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id----~~g---rV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~ 299 (507)
+|+.++++.|.+++++++ ++....+ .++.||++.+| ++| +|..+.|||..+..
T Consensus 144 ~~dl~~li~~h~~~~~~~~-~~~~~~~-~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------- 204 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQV-LAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred chhHHHHHHHHHHhCCcEE-EEEECCC-CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc-----------------
Confidence 589999999998887744 4444433 47789999986 355 78999999964321
Q ss_pred ccCCceeeeEEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHh-hcc
Q 010554 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL-TKE 374 (507)
Q Consensus 300 ~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~l-l~~ 374 (507)
..++++++|+|+|++++|..+.+ ..+. ...+++++++.+++++++++|.++|+|+|||+|++|.+|+.++ +..
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~l~~-~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~~~~ 280 (297)
T PRK10122 205 -LDSDLMAVGRYVLSADIWPELER-TEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRN 280 (297)
T ss_pred -CCccEEEEEEEEECHHHHHHHHh-CCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHHhcC
Confidence 12468999999999999876544 3232 3345679999999999999999999999999999999999997 543
No 27
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2e-37 Score=330.22 Aligned_cols=366 Identities=19% Similarity=0.217 Sum_probs=257.5
Q ss_pred CCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCccc
Q 010554 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 91 ~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
.|+++.|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+.+.+++.+ +
T Consensus 2 ~~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-~------- 69 (446)
T PRK14353 2 TDRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAK-I------- 69 (446)
T ss_pred ccccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhc-c-------
Confidence 46789999999999999984 589999999999 99999999999999999999999998888877742 1
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-cCCHHHHHHHHHHcCCceEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISC 248 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~-~~dl~~ll~~h~~~~a~~tl~~ 248 (507)
+. .+.++. +. +..|++++++.++.+++. ..++|++++||+ ++ ..++..+++ |.+.++++++.+
T Consensus 70 ~~-~~~~~~--~~-------~~~G~~~sl~~a~~~l~~----~~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~~ 134 (446)
T PRK14353 70 AP-DAEIFV--QK-------ERLGTAHAVLAAREALAG----GYGDVLVLYGDTPLITAETLARLRE-RLADGADVVVLG 134 (446)
T ss_pred CC-CceEEE--cC-------CCCCcHHHHHHHHHHHhc----cCCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEEE
Confidence 10 122221 11 136999999999888741 247899999998 44 455778877 445667788887
Q ss_pred EEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC-
Q 010554 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP- 327 (507)
Q Consensus 249 ~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~- 327 (507)
.+..+ +..||.+.. ++|+|.++.|||...... ....++++|+|+|+++.|.++++...+
T Consensus 135 ~~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 194 (446)
T PRK14353 135 FRAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGND 194 (446)
T ss_pred EEeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhccc
Confidence 77654 567988877 568999999998532110 012578999999999887777765432
Q ss_pred --CCCchhhhhHHhhhhc-CcEEEEEec-cEEEecCCHHHHHHHHHHhhcc---------C----CCccccCCCCCcccC
Q 010554 328 --TSNDFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKE---------S----PAFHFYDPKTPFYTS 390 (507)
Q Consensus 328 --~~~d~~~dil~~li~~-~~V~~~~~~-gyw~dIgt~~~y~~An~~ll~~---------~----~~~~~~~~~~~i~~~ 390 (507)
....+..++++.+++. .+++++..+ ++|.||+||+||..|+..+..+ . +...++.+...|..+
T Consensus 195 ~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 274 (446)
T PRK14353 195 NAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRD 274 (446)
T ss_pred CCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCC
Confidence 1234567888888866 569999987 5799999999999998644221 0 111122233333333
Q ss_pred CCcCCCc------eec-------ceeeeceEEcCCcEEc-cceEe-eeeE---EeeccCceEe-eeecCCCcceeeCCCc
Q 010554 391 PRFLPPT------KID-------NCRIKDAIISHGCFLR-ECTVE-HSIV---DYYQTESEIA-SLLAEGKVPIGVGRNT 451 (507)
Q Consensus 391 ~~~~~p~------~i~-------~~~I~~siIg~gc~I~-~~~I~-~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~ 451 (507)
..+.+++ .++ .+.|.+++||++|+|+ ++.|. +|+| +.+|.++++. +.++++ +.|+.++
T Consensus 275 ~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~---~~i~~~~ 351 (446)
T PRK14353 275 VVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEG---AKVNHLT 351 (446)
T ss_pred CEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCC---CEECCee
Confidence 3333333 332 1444467778888887 56665 5666 3567777774 777777 7778888
Q ss_pred EEeeeEeCCCCEECCCcEEec-------CCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 452 KIRNCIIDKNVKIGKDVVIVN-------KDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 452 ~I~nsIIg~na~Ig~~~~i~~-------~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
.+.+++||++|.||.++++.+ ...+++......+..+.+| +.||+++.|++|+++
T Consensus 352 ~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~-~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 352 YIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP-VTIGDGAYIASGSVI 413 (446)
T ss_pred EEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCC-CEECCCCEECCCCEE
Confidence 888888888888888887744 2345555555666666666 567888888777754
No 28
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=1.9e-38 Score=313.92 Aligned_cols=235 Identities=22% Similarity=0.370 Sum_probs=194.3
Q ss_pred EEEEcCC--CCCcccCCccCCCccceeecCcchhhHHHHHHHHh-cCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 97 AIILGGG--AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 97 aVILAaG--~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~-~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
||||||| .||||+|||..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+++.+|+.+.. ..++ .
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~----~~~~-~ 74 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQ----QEFN-V 74 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcc----cccC-c
Confidence 6999999 8999999999999999999999 999999999999 6999999999999999999996321 1122 1
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCC
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 253 (507)
.+.++ .|.. .+||++|++.++++++. ...++|+|++||++++.|+.++++.|+++++++|+++.+++.
T Consensus 75 ~i~~~--~~~~-------~~Gt~~al~~a~~~l~~---~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~ 142 (257)
T cd06428 75 PIRYL--QEYK-------PLGTAGGLYHFRDQILA---GNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASR 142 (257)
T ss_pred eEEEe--cCCc-------cCCcHHHHHHHHHHhhc---cCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccc
Confidence 23332 2211 36999999999988852 124689999999999999999999999999999999988765
Q ss_pred CCCccceEEEEC-CCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC-----
Q 010554 254 SRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP----- 327 (507)
Q Consensus 254 ~~~~~~g~v~id-~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~----- 327 (507)
+.+..||++.+| ++|+|.++.|||..+. +.++++|+|+|++++|..+ ....+
T Consensus 143 ~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~i-~~~~~~~~~e 200 (257)
T cd06428 143 EQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDTI-KKAFQSRQQE 200 (257)
T ss_pred cccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHHH-hhhccccccc
Confidence 557789999998 6789999999986432 3689999999999998654 32221
Q ss_pred -------------CCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHh
Q 010554 328 -------------TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 328 -------------~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~l 371 (507)
...++..++++.++++++|++|.++|||.||||+++|++||+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 201 AQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred cccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 12345679999999999999999999999999999999999863
No 29
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.6e-37 Score=329.46 Aligned_cols=354 Identities=20% Similarity=0.243 Sum_probs=238.1
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|+|||||||.|+||++ .+||+|+|++|+ |||+|+|++|.+.+ ++|+|++++..+.+.+|+. .+
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~-----~~------- 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLP-----EW------- 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhcc-----cc-------
Confidence 7899999999999984 799999999999 99999999999975 8999999998888877663 11
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
+.++. +. ..+||+++++.++.++++ .++|++++||+ +.+.++.++++.|+++++++|+++.+.+
T Consensus 64 ~~~~~--~~-------~~~g~~~ai~~a~~~l~~-----~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~ 129 (448)
T PRK14357 64 VKIFL--QE-------EQLGTAHAVMCARDFIEP-----GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE 129 (448)
T ss_pred cEEEe--cC-------CCCChHHHHHHHHHhcCc-----CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC
Confidence 23322 21 136999999999988741 47899999997 6678899999999999999999998876
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC---C
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~---~ 329 (507)
+ +..||++..| +|+| .+.|||..+... ...+++++|+|+|++++|.++++...+. .
T Consensus 130 ~--~~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~ 188 (448)
T PRK14357 130 D--PTGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKG 188 (448)
T ss_pred C--CCCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCC
Confidence 5 5679998887 6788 788876432110 0125799999999999987776643321 2
Q ss_pred CchhhhhHHhhhhcCcEEEEEeccE--EEecCCHHHHHHHHHHhhcc------CCCcc-------ccCCCCCcccCCCcC
Q 010554 330 NDFGSEIIPAAIMEHDVQAYIFRDY--WEDIGTIKSFYEANMALTKE------SPAFH-------FYDPKTPFYTSPRFL 394 (507)
Q Consensus 330 ~d~~~dil~~li~~~~V~~~~~~gy--w~dIgt~~~y~~An~~ll~~------~~~~~-------~~~~~~~i~~~~~~~ 394 (507)
..+..|+++.+ .++++|.+.+| |.+++++++|..+...+... .+... ++.+...|..++.+.
T Consensus 189 ~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~ 265 (448)
T PRK14357 189 EYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIY 265 (448)
T ss_pred eEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEc
Confidence 23456777766 35899999998 66777999998876554211 01111 122222222233222
Q ss_pred ------------CCceec-ceeeeceEEcCCcEEccceEeeeeE---EeeccCceEe--eeecCCCcceeeCCCcEEeee
Q 010554 395 ------------PPTKID-NCRIKDAIISHGCFLRECTVEHSIV---DYYQTESEIA--SLLAEGKVPIGVGRNTKIRNC 456 (507)
Q Consensus 395 ------------~p~~i~-~~~I~~siIg~gc~I~~~~I~~Sii---~~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~ns 456 (507)
+++.|+ .+.|.+|+||+||.|..+.+.+|+| ..++.++.+. ++++++ +.||+++.+.++
T Consensus 266 ~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~---~~Ig~~~~i~~~ 342 (448)
T PRK14357 266 PMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKS---VKIGNFVEIKKS 342 (448)
T ss_pred CCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCC---cEecCceeeecc
Confidence 333333 2555567777777776566777777 3566666662 667766 666666665544
Q ss_pred Ee-----------------CCCCEECCCcEEecC-------CCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 457 II-----------------DKNVKIGKDVVIVNK-------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 457 II-----------------g~na~Ig~~~~i~~~-------~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+| |+||.||.++++.+. ..+++......+..|.+| +.||+++.|++|++|
T Consensus 343 ~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~g-v~Ig~~~~i~ag~~v 416 (448)
T PRK14357 343 TIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAP-VRIGKGALIGAGSVI 416 (448)
T ss_pred EEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCC-cEECCCCEEcCCCEE
Confidence 44 444444444444321 123333333333344444 566777777777654
No 30
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=7.3e-38 Score=305.17 Aligned_cols=232 Identities=26% Similarity=0.421 Sum_probs=195.6
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|++||||||.|+||+|+|..+||||+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+ + . ..++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~-~-~--~~~~--- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKE-Y-E--KKLG--- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhc-c-c--ccCC---
Confidence 6899999999999999999999999999999 99999999999999999999999999999999862 2 1 1222
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 254 (507)
++++...+. ...||+++++.++.+++. ..++|+|++||++++.++.++++.|+++++++|+++.+.++
T Consensus 73 ~~i~~~~~~-------~~~G~~~al~~a~~~~~~----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 140 (233)
T cd06425 73 IKITFSIET-------EPLGTAGPLALARDLLGD----DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED- 140 (233)
T ss_pred eEEEeccCC-------CCCccHHHHHHHHHHhcc----CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC-
Confidence 444432222 136999999999988851 24689999999999999999999999999999999988765
Q ss_pred CCccceEEEECC-CCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCchh
Q 010554 255 RASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (507)
Q Consensus 255 ~~~~~g~v~id~-~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~~ 333 (507)
++.||++.+|+ +|+|+++.|||..+. ++++++|+|+|++++|..+.+ ...++.
T Consensus 141 -~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l~~----~~~~~~ 194 (233)
T cd06425 141 -PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRIPL----RPTSIE 194 (233)
T ss_pred -ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhccc----Ccccch
Confidence 56799999987 789999999986432 367999999999999965432 223445
Q ss_pred hhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhh
Q 010554 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 334 ~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll 372 (507)
.++++.++++++|++|.++|||.||||+++|++|++.+|
T Consensus 195 ~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 195 KEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred hhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 688999999999999999999999999999999998764
No 31
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=7.4e-37 Score=326.86 Aligned_cols=362 Identities=20% Similarity=0.279 Sum_probs=241.9
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
.++|||||||.|+||++ .+||||+||+|+ |||+|+|++|.++|+++++++++++.+++.+|+.. +
T Consensus 2 ~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-----~------ 66 (458)
T PRK14354 2 NRYAIILAAGKGTRMKS---KLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-----R------ 66 (458)
T ss_pred CceEEEEeCCCCcccCC---CCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-----C------
Confidence 46899999999999984 799999999999 99999999999999999999999998888777641 1
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
+.++... +.+||+++++.++.++++ ..++|++++||. +...++.++++.|++.+++.|+++.+.
T Consensus 67 -~~~~~~~---------~~~g~~~al~~a~~~l~~----~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~ 132 (458)
T PRK14354 67 -SEFALQE---------EQLGTGHAVMQAEEFLAD----KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIA 132 (458)
T ss_pred -cEEEEcC---------CCCCHHHHHHHHHHHhcc----cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEc
Confidence 2222211 136999999999988852 136799999997 446789999999988888888888776
Q ss_pred CCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC---
Q 010554 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--- 328 (507)
Q Consensus 252 ~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~--- 328 (507)
++ +..|+.+..|++++|..+.|||..... ....+++++|+|+|+++.|.+.+++....
T Consensus 133 ~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~ 193 (458)
T PRK14354 133 EN--PTGYGRIIRNENGEVEKIVEQKDATEE-----------------EKQIKEINTGTYCFDNKALFEALKKISNDNAQ 193 (458)
T ss_pred CC--CCCceEEEEcCCCCEEEEEECCCCChH-----------------HhcCcEEEEEEEEEEHHHHHHHHHHhCccccC
Confidence 54 456898888888999999998742110 00135789999999998776666553321
Q ss_pred CCchhhhhHHhhhhc-CcEEEEEeccE--EEecCCHHHHHHHHHHhhccC------CCccccCCC-------CCcccCCC
Q 010554 329 SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPK-------TPFYTSPR 392 (507)
Q Consensus 329 ~~d~~~dil~~li~~-~~V~~~~~~gy--w~dIgt~~~y~~An~~ll~~~------~~~~~~~~~-------~~i~~~~~ 392 (507)
...+..++++.+++. .++++|.++++ |+++++++||..|+..+..+. +...++++. ..+...+.
T Consensus 194 ~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~ 273 (458)
T PRK14354 194 GEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTV 273 (458)
T ss_pred CcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCE
Confidence 233467888888866 57999999976 567779999999886543221 111222322 11222222
Q ss_pred c------------CCCceec-ceeeeceEEcCCcEEccceEeeeeE---EeeccCceEe--eeecCCCcceeeCCCcEEe
Q 010554 393 F------------LPPTKID-NCRIKDAIISHGCFLRECTVEHSIV---DYYQTESEIA--SLLAEGKVPIGVGRNTKIR 454 (507)
Q Consensus 393 ~------------~~p~~i~-~~~I~~siIg~gc~I~~~~I~~Sii---~~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~ 454 (507)
+ ...+.|+ ++.|.+|+||++|.|+++.+.+|+| ..+|.++.|. ++|+++ +.||+++.|+
T Consensus 274 i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~---~~i~~~~~i~ 350 (458)
T PRK14354 274 IEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEE---VKIGNFVEIK 350 (458)
T ss_pred EeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCC---cEECCceEEe
Confidence 2 2222222 2445556666666666555666666 2455555552 566665 5666666555
Q ss_pred eeEeCCC-----------------CEECCCcEEecC-------CCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 455 NCIIDKN-----------------VKIGKDVVIVNK-------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 455 nsIIg~n-----------------a~Ig~~~~i~~~-------~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+++|+++ +.||.++.+.|. ..+++......+..+..| +.||+++.|++|++|
T Consensus 351 ~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~-~~ig~~~~v~~~~~v 426 (458)
T PRK14354 351 KSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAP-VTVGDNAYIAAGSTI 426 (458)
T ss_pred eeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCC-cEECCCCEECCCCEE
Confidence 5444444 444444444332 122334444444445555 567777777777654
No 32
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=9e-37 Score=306.17 Aligned_cols=235 Identities=23% Similarity=0.395 Sum_probs=189.6
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEec-cCchHHHHHHHhcccCCCccc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~-~~~~~l~~~l~~~~~~~~~~~ 170 (507)
|+.|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|+++ +..+.+.+|+. ++..|
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~-----~g~~~ 74 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG-----DGSQW 74 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHc-----Ccccc
Confidence 5689999999999999999999999999999999 99999999999999999998765 45667777774 33345
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-cCCHHHHHHHHHHcCCceEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
+. .+.+. .|.. ++|||+|+..+.+++. .+++++++||+++ +.|+.++++.|.++++++|+++.
T Consensus 75 g~-~i~y~--~q~~-------~~Gta~Al~~a~~~i~------~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~ 138 (292)
T PRK15480 75 GL-NLQYK--VQPS-------PDGLAQAFIIGEEFIG------GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAY 138 (292)
T ss_pred Cc-eeEEE--ECCC-------CCCHHHHHHHHHHHhC------CCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEE
Confidence 41 23333 3321 3699999999998884 2568889999754 89999999999988889999988
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC-
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~- 328 (507)
++++ ++.||++.+|++|+|+++.|||..+. ++++++|+|+|+++++.. ++...+.
T Consensus 139 ~v~~--p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~~-~~~~~~~~ 194 (292)
T PRK15480 139 HVND--PERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVEM-AKNLKPSA 194 (292)
T ss_pred EcCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHHH-HhhcCCCC
Confidence 8865 67899999998899999999997442 368999999999998864 4543332
Q ss_pred -CCchhhhhHHhhhhcCcEEE-EEecc-EEEecCCHHHHHHHHHHhh
Q 010554 329 -SNDFGSEIIPAAIMEHDVQA-YIFRD-YWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 329 -~~d~~~dil~~li~~~~V~~-~~~~g-yw~dIgt~~~y~~An~~ll 372 (507)
.+-..+++++.+++++++.. +...| +|.|+||+++|.+|+..+.
T Consensus 195 ~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 195 RGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 12225789999998887644 46678 4999999999999998775
No 33
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=1.4e-36 Score=297.33 Aligned_cols=231 Identities=23% Similarity=0.382 Sum_probs=189.0
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccC-chHHHHHHHhcccCCCcccCCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~-~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++ .+++.+|+.. +..|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~-----~~~~~-- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD-----GSDLG-- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc-----ccccC--
Confidence 6899999999999999999999999999998 9999999999999999999998754 4778888852 22343
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-cCCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
+++....+. ...||++|++.++++++ .++|+|++||+++ +.++.++++.|.++++++|+++.+++
T Consensus 73 -~~i~~~~~~-------~~~G~~~al~~a~~~~~------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (240)
T cd02538 73 -IRITYAVQP-------KPGGLAQAFIIGEEFIG------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN 138 (240)
T ss_pred -ceEEEeeCC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 333332332 13699999999988874 3679999999755 67899999999988899999988876
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC--CC
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 330 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~~ 330 (507)
+ ++.||++.+|++|+|+++.|||..+. +.++++|+|+|++++|. +++...+. ..
T Consensus 139 ~--~~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~ 194 (240)
T cd02538 139 D--PERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARGE 194 (240)
T ss_pred c--hhcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCCe
Confidence 5 56799999998899999999986432 25789999999999884 56543222 22
Q ss_pred chhhhhHHhhhhcCcEEEEEec--cEEEecCCHHHHHHHHHHh
Q 010554 331 DFGSEIIPAAIMEHDVQAYIFR--DYWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 331 d~~~dil~~li~~~~V~~~~~~--gyw~dIgt~~~y~~An~~l 371 (507)
.+..++++.+++++++.++.++ |||.|||||++|++||+.+
T Consensus 195 ~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 195 LEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred EEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 3456899999998888888877 9999999999999999865
No 34
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.1e-35 Score=317.22 Aligned_cols=325 Identities=21% Similarity=0.315 Sum_probs=217.4
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|.+||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++|+++++|++++..+.+.+|+.+. + .
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~--------~--~ 67 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHL--------P--G 67 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhccc--------C--C
Confidence 6799999999999985 789999999999 999999999999999999999999888888777421 1 1
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
++++. +. ++.|++++++.++.++++ ..++++|++||+ +...++.++++.|++.++++++++.+.+
T Consensus 68 i~~v~--~~-------~~~G~~~sv~~~~~~l~~----~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 134 (450)
T PRK14360 68 LEFVE--QQ-------PQLGTGHAVQQLLPVLKG----FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP 134 (450)
T ss_pred eEEEE--eC-------CcCCcHHHHHHHHHHhhc----cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 44443 21 136999999999888752 236799999998 5577899999999999998888877766
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC---C
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~---~ 329 (507)
+ +..||.+..|++|+|.++.|||..... ...++++++|+|+|+++.|.+++++..+. .
T Consensus 135 ~--~~~~g~~~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~ 195 (450)
T PRK14360 135 N--PKGYGRVFCDGNNLVEQIVEDRDCTPA-----------------QRQNNRINAGIYCFNWPALAEVLPKLSSNNDQK 195 (450)
T ss_pred C--CCCccEEEECCCCCEEEEEECCCCChh-----------------HhcCcEEEEEEEEEEHHHHHHHHhhccccccCC
Confidence 5 556999999989999999999853210 01236899999999999988887654332 3
Q ss_pred CchhhhhHHhhhhcCcEEEEEeccE--EEecCCHHHHHHHHHHhhccC------CCccccCCCC-CcccCCCcCCCceec
Q 010554 330 NDFGSEIIPAAIMEHDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPKT-PFYTSPRFLPPTKID 400 (507)
Q Consensus 330 ~d~~~dil~~li~~~~V~~~~~~gy--w~dIgt~~~y~~An~~ll~~~------~~~~~~~~~~-~i~~~~~~~~p~~i~ 400 (507)
..+.+++++.+. ++.+|.+.++ |..+++++++..+...+.... +...+.++.. .+.....+.+++.++
T Consensus 196 e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~ 272 (450)
T PRK14360 196 EYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIE 272 (450)
T ss_pred ceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEEC
Confidence 345667777663 3667777776 456999999998887654321 1111222221 111122222333333
Q ss_pred -ceeee-ceEEcCCcEEc-cceEeeeeEE---eeccCceE-eeeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 401 -NCRIK-DAIISHGCFLR-ECTVEHSIVD---YYQTESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 401 -~~~I~-~siIg~gc~I~-~~~I~~Sii~---~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
++.|. ++.||++|.|+ ++.|.+|+|+ .++ .+.+ .++++++ +.||.+++|+ +|+||++|+||+++.|.+
T Consensus 273 ~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~---~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~ 348 (450)
T PRK14360 273 PQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDG---VKIGPYAHLRPEAQIGSNCRIGNFVEIKK 348 (450)
T ss_pred CCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCC---cEECCCCEECCCCEEeCceEECCCEEEec
Confidence 23333 34555555554 4455554441 121 1112 2455555 5555555554 455555555555555543
No 35
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=2.4e-36 Score=302.65 Aligned_cols=231 Identities=26% Similarity=0.447 Sum_probs=188.7
Q ss_pred EEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEec-cCchHHHHHHHhcccCCCcccCCCe
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~-~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++||++|+|+++ +..+++.+|+. ++..|+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg-----~g~~~g--- 71 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG-----DGSQWG--- 71 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhc-----cccccC---
Confidence 589999999999999999999999999999 99999999999999999998875 55667777764 344554
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-ccCCHHHHHHHHHHcCCceEEEEEEcCC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGE 253 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i-~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 253 (507)
+.+....|.. ++|||+|++.+.+++. .++|++++||++ ++.++.++++.|.+.++++|+++.++++
T Consensus 72 ~~i~~~~q~~-------~~Gta~al~~a~~~l~------~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~ 138 (286)
T TIGR01207 72 VNLSYAVQPS-------PDGLAQAFIIGEDFIG------GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSD 138 (286)
T ss_pred ceEEEEEccC-------CCCHHHHHHHHHHHhC------CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccC
Confidence 3343333421 3699999999999885 367889999975 5889999999999888899999988875
Q ss_pred CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC--CCc
Q 010554 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SND 331 (507)
Q Consensus 254 ~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~~d 331 (507)
++.||++.+|++|+|+++.|||..+. ++++++|+|+|+++++. +++...+. ..-
T Consensus 139 --p~~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~ 194 (286)
T TIGR01207 139 --PERYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGEL 194 (286)
T ss_pred --HHHCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCcE
Confidence 67899999998899999999996442 36899999999999875 55544332 223
Q ss_pred hhhhhHHhhhhcCcEEEEEe-ccE-EEecCCHHHHHHHHHHhh
Q 010554 332 FGSEIIPAAIMEHDVQAYIF-RDY-WEDIGTIKSFYEANMALT 372 (507)
Q Consensus 332 ~~~dil~~li~~~~V~~~~~-~gy-w~dIgt~~~y~~An~~ll 372 (507)
..+++++.+++++++.++.+ +|+ |.|+||+++|++||..+.
T Consensus 195 eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 195 EITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred eHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 45799999998877766666 676 999999999999998764
No 36
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=4.5e-36 Score=298.49 Aligned_cols=244 Identities=22% Similarity=0.307 Sum_probs=191.1
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCCC-cccCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNG-TNFGD 172 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~~-~~~~~ 172 (507)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++++++.+|+...+ +... ...+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 6899999999999999999999999999999 9999999999999999999999999999999996432 1100 00000
Q ss_pred -----------CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccC---CHHHHHHHHH
Q 010554 173 -----------GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHV 238 (507)
Q Consensus 173 -----------~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~---dl~~ll~~h~ 238 (507)
..+++....| .+.+|||+|++.++.+++ .++|+|++||+++.. ++.++++.|+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-------~~~~Gt~~al~~~~~~i~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (267)
T cd02541 80 TDLLEEVRIISDLANIHYVRQ-------KEPLGLGHAVLCAKPFIG------DEPFAVLLGDDLIDSKEPCLKQLIEAYE 146 (267)
T ss_pred HHHhhhhhcccCCceEEEEEc-------CCCCChHHHHHHHHHHhC------CCceEEEECCeEEeCCchHHHHHHHHHH
Confidence 0122221122 234799999999998885 278999999998864 4999999998
Q ss_pred HcCCceEEEEEEcCCCCCccceEEEECC----CCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEe
Q 010554 239 DRDADITISCAAVGESRASDYGLVKIDN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFK 314 (507)
Q Consensus 239 ~~~a~~tl~~~~~~~~~~~~~g~v~id~----~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~ 314 (507)
+.+++ ++++.+++.+.+..||++.+|+ +++|.++.|||..... .+.++++|+|+|+
T Consensus 147 ~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (267)
T cd02541 147 KTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (267)
T ss_pred HhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcC
Confidence 87776 4666666655567899999985 2589999999863211 2368999999999
Q ss_pred HHHHHHHHHhhC-CCCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhh
Q 010554 315 KDVLFKLLRWRY-PTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 315 ~~iL~~ll~~~~-~~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll 372 (507)
+++|..+.+... .....+..++++.++++++|++|.++|||.||||+++|++||+++.
T Consensus 207 ~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 207 PDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHHHHHHhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 999876533111 1233456789999999899999999999999999999999999874
No 37
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=1e-35 Score=293.89 Aligned_cols=232 Identities=19% Similarity=0.309 Sum_probs=189.3
Q ss_pred EEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCCCccc--CC
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF--GD 172 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~~~~~--~~ 172 (507)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++||++|+|+++|+.+++.+|+.+.. .+.+.++ ..
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 9999999999999999999999999999999986321 1111110 00
Q ss_pred C------------eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHc
Q 010554 173 G------------FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240 (507)
Q Consensus 173 ~------------~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~ 240 (507)
+ .+++. .+ ..++||++||+.+++++. .++|+|++||+++++|+.++++.|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~-------~~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLV--DT-------GESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeee--ec-------CCcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0 01111 11 113799999999988874 478999999999999999999999999
Q ss_pred CCceEEEEEEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHH
Q 010554 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (507)
Q Consensus 241 ~a~~tl~~~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ 320 (507)
++++|+++.+ + +..||++.+|+ ++|++|.|||... +.++++|+|+|++++| .
T Consensus 145 ~~d~tl~~~~--~--~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il-~ 196 (254)
T TIGR02623 145 GKKATVTAVQ--P--PGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVL-D 196 (254)
T ss_pred CCCEEEEEec--C--CCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHH-h
Confidence 9999987642 2 46799999985 6999999998532 2579999999999998 4
Q ss_pred HHHhhCCCCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhcc
Q 010554 321 LLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (507)
Q Consensus 321 ll~~~~~~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~ 374 (507)
+++. ...++.+++++.+++++++++|.++|||.||||+++|.+|+..+...
T Consensus 197 ~l~~---~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~ 247 (254)
T TIGR02623 197 LIDG---DATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESG 247 (254)
T ss_pred hccc---cCchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcC
Confidence 5553 23467789999999999999999999999999999999999987653
No 38
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=4.9e-36 Score=296.97 Aligned_cols=239 Identities=21% Similarity=0.286 Sum_probs=187.4
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cC-----CCc
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG-----NGT 168 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~-----~~~ 168 (507)
|+|||||||.||||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+ +. .+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 6899999999999999999999999999999 9999999999999999999999999999999996432 11 000
Q ss_pred ccC-------CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccC---CHHHHHHHHH
Q 010554 169 NFG-------DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHV 238 (507)
Q Consensus 169 ~~~-------~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~---dl~~ll~~h~ 238 (507)
.+. ...+.+....| .+.+||++|++.++.++. .++|+|++||+++.. ++.++++.|+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-------~~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQ-------KEQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred HHHHHHhhhccccceEEEEec-------CCCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHH
Confidence 000 00012211122 234799999999988874 378999999998854 6999999999
Q ss_pred HcCCceEEEEEEcCCCCCccceEEEECC----CCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEe
Q 010554 239 DRDADITISCAAVGESRASDYGLVKIDN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFK 314 (507)
Q Consensus 239 ~~~a~~tl~~~~~~~~~~~~~g~v~id~----~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~ 314 (507)
++++++ +++..++.+++..||++.+|+ +++|+.+.|||..... .++++++|+|+|+
T Consensus 147 ~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (260)
T TIGR01099 147 KYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (260)
T ss_pred HhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECC
Confidence 988876 666666655578899999862 3699999999953211 2368999999999
Q ss_pred HHHHHHHHHhhCC-CCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHH
Q 010554 315 KDVLFKLLRWRYP-TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367 (507)
Q Consensus 315 ~~iL~~ll~~~~~-~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~A 367 (507)
+++|..+.+.... ....+..++++.++++++|++|.++|||.||||+++|++|
T Consensus 207 ~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 207 PDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 9998766442221 1234567899999999999999999999999999999875
No 39
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=3.1e-35 Score=296.75 Aligned_cols=244 Identities=22% Similarity=0.315 Sum_probs=194.2
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCC--Cc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGN--GT 168 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~--~~ 168 (507)
.+-|+|||||||.|+||+|+|..+||||+||+|+ |+|+|+|++|.++||++|+|++++..+++.+|+...+ |+. ..
T Consensus 6 ~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~ 84 (302)
T PRK13389 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEK 84 (302)
T ss_pred ccceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhh
Confidence 4568999999999999999999999999999999 9999999999999999999999999999999996432 220 00
Q ss_pred ccCC-----------CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--------CC
Q 010554 169 NFGD-----------GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--------MD 229 (507)
Q Consensus 169 ~~~~-----------~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~--------~d 229 (507)
+... ....+.+..| ...+|||+|++++++++. +++|+|++||++++ .|
T Consensus 85 ~~~~~~~~e~~~i~~~~~~i~~~~q-------~~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~~d 151 (302)
T PRK13389 85 RVKRQLLDEVQSICPPHVTIMQVRQ-------GLAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQDN 151 (302)
T ss_pred hhhhHHHHhhhhccccCceEEEeec-------CCCCChHHHHHHHHHHcC------CCCEEEEeCcceeccccccccccc
Confidence 0000 0012222222 124799999999988774 37899999999874 79
Q ss_pred HHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEECC-------CCcEEEEEeCCCccccccccccccccCCCccccccC
Q 010554 230 YMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN-------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKC 302 (507)
Q Consensus 230 l~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id~-------~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (507)
+.++++.|.+++++ |+++.++++ +..||++.+|+ +++|.++.|||..... .
T Consensus 152 l~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~ 209 (302)
T PRK13389 152 LAEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------P 209 (302)
T ss_pred HHHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------C
Confidence 99999999988876 777777754 67899998863 3589999999974211 1
Q ss_pred CceeeeEEEEEeHHHHHHHHHhhCC--CCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhh
Q 010554 303 PYVASMGVYVFKKDVLFKLLRWRYP--TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 303 ~~l~~~Giyif~~~iL~~ll~~~~~--~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll 372 (507)
++++++|+|+|++++| ++++...+ ....+.+++++.++++.+|++|.++|||.|||||++|.+|++++-
T Consensus 210 s~~~~~GiYi~~~~il-~~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 210 SNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred ccEEEEEEEEECHHHH-HHHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 3689999999999998 56665332 234567899999999999999999999999999999999999863
No 40
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=2.5e-35 Score=284.81 Aligned_cols=219 Identities=21% Similarity=0.306 Sum_probs=182.7
Q ss_pred EEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeE
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V 175 (507)
+|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+. .|+ +
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~------~~~---~ 70 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDS------RFG---L 70 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhcc------cCC---c
Confidence 589999999999999999999999999999 999999999999999999999999999999998631 232 3
Q ss_pred EEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHH--HcCCceEEEEEEcCC
Q 010554 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV--DRDADITISCAAVGE 253 (507)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~--~~~a~~tl~~~~~~~ 253 (507)
.+....+. .+..||+++++.++.+++ .++|+|++||++++.|+.++++.|+ ..++.+|+...+.+.
T Consensus 71 ~i~~~~~~------~~~~g~~~~l~~~~~~~~------~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (221)
T cd06422 71 RITISDEP------DELLETGGGIKKALPLLG------DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPG 138 (221)
T ss_pred eEEEecCC------CcccccHHHHHHHHHhcC------CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCC
Confidence 33332221 023699999999988874 3789999999999999999999998 456666666655543
Q ss_pred CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCchh
Q 010554 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (507)
Q Consensus 254 ~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~~ 333 (507)
...||.+.+|++|+|..+.|||.. +++++|+|+|++++|..+.+. ....
T Consensus 139 --~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~~ 187 (221)
T cd06422 139 --HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFSL 187 (221)
T ss_pred --CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----cccH
Confidence 567999999988999999888742 478999999999998765432 2346
Q ss_pred hhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHH
Q 010554 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367 (507)
Q Consensus 334 ~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~A 367 (507)
+++++.+++++++++|.++|||.||||+++|.+|
T Consensus 188 ~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 188 NPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 7899999999999999999999999999999875
No 41
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=1.9e-34 Score=284.77 Aligned_cols=241 Identities=16% Similarity=0.263 Sum_probs=190.5
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC----C
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG----D 172 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~----~ 172 (507)
|||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++|+.+++.+|+.+.+. .+..+. .
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~-~~~~~~~~~~~ 78 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFL-HNSDVTIDLGT 78 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhh-hcCceeEeecc
Confidence 69999999999999999999999999999 99999999999999999999999999999999975321 011111 0
Q ss_pred CeEEEecCccCCCC---CCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEE
Q 010554 173 GFVEVLAATQTPGE---SGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 173 ~~V~vl~~~q~~~~---~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
+.+.++......-. .......||++|++.++.++. ..++|+|++||++++.|+.++++.|...++++|+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~-----~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~ 153 (253)
T cd02524 79 NRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLG-----DDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAV 153 (253)
T ss_pred cceeeecccccccceeecccCcccccHHHHHHHHHhcC-----CCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEe
Confidence 11222221000000 000012589999999998874 1278999999999999999999999999999998775
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCC
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~ 329 (507)
. ....||++.+|++|+|..+.|||... +.++++|+|+|++++|..+ +.. .
T Consensus 154 ~----~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~l-~~~---~ 203 (253)
T cd02524 154 H----PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFDYI-DGD---D 203 (253)
T ss_pred c----CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHHhh-ccc---c
Confidence 3 24679999999899999999998642 1478999999999998644 322 4
Q ss_pred CchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhcc
Q 010554 330 NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (507)
Q Consensus 330 ~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~ 374 (507)
.++.+++++.+++++++++|.++|||.||+|+++|.+|+..+...
T Consensus 204 ~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 204 TVFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred chhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 466779999999999999999999999999999999999877543
No 42
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=5.3e-34 Score=278.10 Aligned_cols=232 Identities=26% Similarity=0.398 Sum_probs=191.4
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|++++|.++|+++|+|++++..+++.+|+.+.+ +|+ ..
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~-----~~~-~~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGS-----RFG-VR 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchh-----hcC-Ce
Confidence 7899999999999999999999999999999 9999999999999999999999999999988885321 222 11
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 254 (507)
+.++. +. ++.||+++++.++.++. .++|++++||++++.++.++++.|.++++++++++.+.++
T Consensus 74 i~~~~--~~-------~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (236)
T cd04189 74 ITYIL--QE-------EPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED- 137 (236)
T ss_pred EEEEE--CC-------CCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC-
Confidence 33332 21 23699999999988774 3689999999999999999999999999999999888765
Q ss_pred CCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC--CCch
Q 010554 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (507)
Q Consensus 255 ~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~~d~ 332 (507)
+..||++.+|+ ++|..+.|||..+. +.++++|+|+|++++|..+ +...+. ...+
T Consensus 138 -~~~~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~ 193 (236)
T cd04189 138 -PRRFGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGELE 193 (236)
T ss_pred -cccceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeEE
Confidence 46789888875 59999999986431 2578999999999998654 432221 2234
Q ss_pred hhhhHHhhhhc-CcEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 333 ~~dil~~li~~-~~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
..++++.++++ .+|++|.+++||.||||+++|.+||+.+++
T Consensus 194 ~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 194 ITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred HHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 57889988866 579999999999999999999999999885
No 43
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=4.7e-33 Score=267.20 Aligned_cols=217 Identities=30% Similarity=0.520 Sum_probs=182.4
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+.+ .++ ..+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~-----~~~-~~i~ 73 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGS-----KFG-VNIE 73 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChh-----hcC-ceEE
Confidence 69999999999999999999999999999 9999999999999999999999999899988885321 122 1233
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCCCC
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 256 (507)
++. +. ...|++++++.++.++. .++|+|++||++++.|+.++++.|+++++++|+++.+.+ .+
T Consensus 74 ~~~--~~-------~~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 136 (217)
T cd04181 74 YVV--QE-------EPLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DP 136 (217)
T ss_pred EEe--CC-------CCCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CC
Confidence 332 21 12699999999987772 489999999999999999999999999999999988776 36
Q ss_pred ccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCchhhhh
Q 010554 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (507)
Q Consensus 257 ~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~~~di 336 (507)
..||++.+|++|+|.++.|||.... ..++++|+|+|++++|. +++.......++..++
T Consensus 137 ~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~ 194 (217)
T cd04181 137 SRYGVVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTDA 194 (217)
T ss_pred CcceEEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHHH
Confidence 7899999998899999999986432 26899999999999884 5554332346778899
Q ss_pred HHhhhhcCcEEEEEeccEEEecC
Q 010554 337 IPAAIMEHDVQAYIFRDYWEDIG 359 (507)
Q Consensus 337 l~~li~~~~V~~~~~~gyw~dIg 359 (507)
++.++++.+|++|.++|||.|||
T Consensus 195 ~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 195 IPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHhcCCEEEEEcCCEEecCC
Confidence 99999999999999999999986
No 44
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=100.00 E-value=4.2e-33 Score=268.43 Aligned_cols=223 Identities=25% Similarity=0.420 Sum_probs=185.3
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+|+.+.+ .++. .+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~-----~~~~-~~~ 73 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGY-----RGGI-RIY 73 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcc-----ccCc-eEE
Confidence 69999999999999999999999999999 9999999999999999999999999999988886322 1221 122
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCCCC
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 256 (507)
+.. +. ...|++++++.++.++. .++|++++||++++.++.++++.|++.++++++++.+..+ .
T Consensus 74 ~~~--~~-------~~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~ 136 (223)
T cd06915 74 YVI--EP-------EPLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--A 136 (223)
T ss_pred EEE--CC-------CCCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--C
Confidence 221 11 12699999999987773 4789999999999999999999999888889988887654 4
Q ss_pred ccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCchhhhh
Q 010554 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (507)
Q Consensus 257 ~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~~~di 336 (507)
..|+.+.+|++|+|..+.|||.... ++++++|+|+|++++|..+.+. ..++.+++
T Consensus 137 ~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~ 191 (223)
T cd06915 137 SRYGNVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEIPAD----AFSLEADV 191 (223)
T ss_pred CcceeEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhCCcc----CCChHHHH
Confidence 5789999998899999999876421 3688999999999998754221 33456789
Q ss_pred HHhhhhcCcEEEEEeccEEEecCCHHHHHHHH
Q 010554 337 IPAAIMEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (507)
Q Consensus 337 l~~li~~~~V~~~~~~gyw~dIgt~~~y~~An 368 (507)
++.++++++|.+|.++++|.||+|++||+.|+
T Consensus 192 ~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 192 LPALVKRGRLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HHHHHhcCcEEEEecCCeEEecCCHHHHHhhC
Confidence 99999888999999999999999999999873
No 45
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=2.1e-32 Score=263.82 Aligned_cols=219 Identities=24% Similarity=0.451 Sum_probs=178.1
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+. ..++. .+.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-----~~~~~-~i~ 73 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG-----SKFGV-NIS 73 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc-----cccCc-cEE
Confidence 69999999999999999999999999999 999999999999999999999999998898888531 12321 133
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCCCC
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 256 (507)
++ .+. .+.||+++++.+.... .++|+|++||++++.++.++++.|+..++++++++.+... .
T Consensus 74 ~~--~~~-------~~~g~~~~l~~~~~~~-------~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~ 135 (220)
T cd06426 74 YV--RED-------KPLGTAGALSLLPEKP-------TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV--Q 135 (220)
T ss_pred EE--ECC-------CCCcchHHHHHHHhhC-------CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--C
Confidence 32 221 1369999997665332 4789999999999999999999999999999988877543 3
Q ss_pred ccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCchhhhh
Q 010554 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (507)
Q Consensus 257 ~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~~~di 336 (507)
..||++..|+ ++|.++.|||.. +.++++|+|+|+++++..+ + +.......++
T Consensus 136 ~~~g~~~~d~-~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~i-~---~~~~~~l~~~ 187 (220)
T cd06426 136 VPYGVVETEG-GRITSIEEKPTH-----------------------SFLVNAGIYVLEPEVLDLI-P---KNEFFDMPDL 187 (220)
T ss_pred CcceEEEECC-CEEEEEEECCCC-----------------------CCeEEEEEEEEcHHHHhhc-C---CCCCcCHHHH
Confidence 4699999986 899999998753 2478999999999998653 2 1222235688
Q ss_pred HHhhhhc-CcEEEEEeccEEEecCCHHHHHHHH
Q 010554 337 IPAAIME-HDVQAYIFRDYWEDIGTIKSFYEAN 368 (507)
Q Consensus 337 l~~li~~-~~V~~~~~~gyw~dIgt~~~y~~An 368 (507)
++.++++ .+|++|.++++|.||||+++|.+||
T Consensus 188 ~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 188 IEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 9888876 5699999999999999999999986
No 46
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=3e-32 Score=262.97 Aligned_cols=206 Identities=17% Similarity=0.253 Sum_probs=163.8
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCCCcccCCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDG 173 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~~~~~~~~ 173 (507)
++|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+ |+.. +...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~--~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPK--SSLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccccc--cCcc
Confidence 5899999999999999999999999999999 9999999999999999999999999999999997543 3221 1111
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHH-----cCCceEEEE
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD-----RDADITISC 248 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~-----~~a~~tl~~ 248 (507)
.+.++. +. ...|||+|++.+... . ...++|++++||+++++|+.++++.|++ +++++|+++
T Consensus 78 ~i~~~~--~~-------~~~~~~~al~~~~~~-~----~~~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~ 143 (217)
T cd04197 78 IVIIIM--SE-------DCRSLGDALRDLDAK-G----LIRGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVL 143 (217)
T ss_pred eEEEEe--CC-------CcCccchHHHHHhhc-c----ccCCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEE
Confidence 244332 21 135899999765321 0 1247899999999999999999999998 489999999
Q ss_pred EEcCCCC----CccceEEEECCC-CcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHH
Q 010554 249 AAVGESR----ASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (507)
Q Consensus 249 ~~~~~~~----~~~~g~v~id~~-grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL 318 (507)
.++++++ ..+++++.+|++ ++|+.|.|||..+.....+++++++...+... ..+++.++|+|+|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~-i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 144 KEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVE-IRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEE-EECCceecCEEEeCCCCC
Confidence 8887643 224788888865 89999999998776555677888777766543 467999999999999864
No 47
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=1.9e-31 Score=255.18 Aligned_cols=248 Identities=21% Similarity=0.307 Sum_probs=204.8
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCC----
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGN---- 166 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~---- 166 (507)
++-.+|||+|||.||||.|-|+..||-||||.++ |+|+|+++.+..+||++|++||+.+...+.+|+...| +..
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 3567999999999999999999999999999999 9999999999999999999999999999999987555 221
Q ss_pred -Cc--------ccCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccC---CHHHHH
Q 010554 167 -GT--------NFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFI 234 (507)
Q Consensus 167 -~~--------~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~---dl~~ll 234 (507)
++ +. ...+.+.+..|.. ++|.|||++++++++. +++|.|+.||.++.. -+++|+
T Consensus 81 ~~K~~~L~~v~~i-~~~~~i~~vRQ~e-------~~GLGhAVl~A~~~vg------~EpFaVlL~Ddl~~~~~~~l~qmi 146 (291)
T COG1210 81 RGKRELLEEVRSI-PPLVTISFVRQKE-------PLGLGHAVLCAKPFVG------DEPFAVLLPDDLVDSEKPCLKQMI 146 (291)
T ss_pred hCHHHHHHHHHhc-ccCceEEEEecCC-------CCcchhHHHhhhhhcC------CCceEEEeCCeeecCCchHHHHHH
Confidence 11 01 1234555555542 4799999999999985 589999999999865 378899
Q ss_pred HHHHHcCCceEEEEEEcCCCCCccceEEE----ECCC-CcEEEEEeCCCccccccccccccccCCCccccccCCceeeeE
Q 010554 235 QSHVDRDADITISCAAVGESRASDYGLVK----IDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMG 309 (507)
Q Consensus 235 ~~h~~~~a~~tl~~~~~~~~~~~~~g~v~----id~~-grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 309 (507)
+.+.+.+.. ++.+.+++.++.+.||++. .+++ .+|..++|||+..+. .|+++..|
T Consensus 147 ~~ye~~g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~G 206 (291)
T COG1210 147 ELYEETGGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVG 206 (291)
T ss_pred HHHHHhCCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------Ccceeeee
Confidence 998888764 6788889887889999997 4333 489999999976543 36899999
Q ss_pred EEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccC
Q 010554 310 VYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (507)
Q Consensus 310 iyif~~~iL~~ll~~~~~~--~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~ 375 (507)
-|+|++++|. +|++..++ .+--++|.+..++++..+++|.++|-.+|+|++..|.+|+.++..+.
T Consensus 207 RYil~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 207 RYVLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred eeecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 9999999996 67775554 23346788999999999999999999999999999999999886543
No 48
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.97 E-value=1e-30 Score=249.08 Aligned_cols=198 Identities=47% Similarity=0.780 Sum_probs=162.2
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCCCcccCCCeE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFV 175 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~~~~~~~~~V 175 (507)
|||||||.||||+|||..+||+|+||+|+||||+|+++++.++|+++|+|+++++.+++.+|+.+.. |+. +.....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDL--DRKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccC--CCCCCCE
Confidence 6999999999999999999999999999879999999999999999999999999999999986432 221 1111225
Q ss_pred EEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCCC
Q 010554 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESR 255 (507)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 255 (507)
+++...+.. .+.+.+|||+|++.++.++++ ...++|+|++||++++.++.++++.|+++++++|+++.
T Consensus 79 ~~~~~~~~~---~~~~~~Gta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQRK---GGDWYRGTADAIYQNLDYIER---SDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccCC---CCCcccCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 555433311 123568999999999988852 12478999999999999999999999999988888765
Q ss_pred CccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC-CCCCchhh
Q 010554 256 ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY-PTSNDFGS 334 (507)
Q Consensus 256 ~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~-~~~~d~~~ 334 (507)
+++|+|+|++++|..+++... ....++.+
T Consensus 147 --------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~ 176 (200)
T cd02508 147 --------------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGK 176 (200)
T ss_pred --------------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHH
Confidence 257999999999987776532 23457788
Q ss_pred hhHHhhhhcCcEEEEEeccEEEec
Q 010554 335 EIIPAAIMEHDVQAYIFRDYWEDI 358 (507)
Q Consensus 335 dil~~li~~~~V~~~~~~gyw~dI 358 (507)
|+++.++++.++++|.++|||.||
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 999999999999999999999986
No 49
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.97 E-value=3.2e-30 Score=250.50 Aligned_cols=222 Identities=17% Similarity=0.229 Sum_probs=173.0
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
|||||||.|+||+|+|..+||||+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+. .+ +.
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~-------~~---~~ 69 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY-------PN---IK 69 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc-------CC---eE
Confidence 69999999999999999999999999999 999999999999999999999999999999888521 11 45
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCCCC
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 256 (507)
++...+.. ..|++++++.++.++. ++|++++||++++. ++++.|.+.++++|+++.+..++..
T Consensus 70 ~~~~~~~~-------~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (229)
T cd02523 70 FVYNPDYA-------ETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWE 132 (229)
T ss_pred EEeCcchh-------hhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCccccc
Confidence 54332211 2699999999987772 78999999999865 5677888888999998887444334
Q ss_pred ccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHh---hCC--CCCc
Q 010554 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW---RYP--TSND 331 (507)
Q Consensus 257 ~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~---~~~--~~~d 331 (507)
..+++...| .+++..+.+||..+. ...++++|+|+|++++|..+.+. ..+ ...+
T Consensus 133 ~~~~~~~~~-~~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~ 191 (229)
T cd02523 133 DEYVKDLDD-AGVLLGIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVNL 191 (229)
T ss_pred ccceeeecC-ccceEeecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhcccccc
Confidence 456654444 378999999886432 12578999999999998765432 111 2456
Q ss_pred hhhhhHHhhhhc--CcEEEEEeccEEEecCCHHHHHHHH
Q 010554 332 FGSEIIPAAIME--HDVQAYIFRDYWEDIGTIKSFYEAN 368 (507)
Q Consensus 332 ~~~dil~~li~~--~~V~~~~~~gyw~dIgt~~~y~~An 368 (507)
+.+++++.++++ .+++++.. +||.||||+++|++|+
T Consensus 192 ~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 192 YYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred cHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 678999999884 44555555 8999999999999874
No 50
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.97 E-value=1.2e-29 Score=246.79 Aligned_cols=222 Identities=18% Similarity=0.246 Sum_probs=168.8
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
.||||||.|+||+|+|..+||||+||+|+ |||+|+|+++.++|+++++|++++.. ....|+.+.+ ... . . .+.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~-~~~-~-~--~~~ 73 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESL-KLL-A-P--NAT 73 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHH-HHh-C-C--CCE
Confidence 48999999999999999999999999999 99999999999999999999986432 2223332221 110 0 1 123
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCCCC
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 256 (507)
++...+. ..||++++..++..+. ..++|+|++||++++.++.++++.|.+.+++.++++...+ .
T Consensus 74 i~~~~~~--------~~g~~~~l~~a~~~l~-----~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 137 (231)
T cd04183 74 VVELDGE--------TLGAACTVLLAADLID-----NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS---H 137 (231)
T ss_pred EEEeCCC--------CCcHHHHHHHHHhhcC-----CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---C
Confidence 3221111 2699999999988773 2478999999999999999999999888877777766552 3
Q ss_pred ccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHH-HHHHHHHhhC-----CCCC
Q 010554 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLFKLLRWRY-----PTSN 330 (507)
Q Consensus 257 ~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~-iL~~ll~~~~-----~~~~ 330 (507)
..||.+.+|++|+|..+.||+.. +.++++|+|+|+++ .|.+.++... +...
T Consensus 138 ~~~~~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~ 194 (231)
T cd04183 138 PRWSYVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGE 194 (231)
T ss_pred CCeEEEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccCc
Confidence 47999999999999999888531 24689999999997 6655555321 1123
Q ss_pred chhhhhHHhhhhcC-cEEEEEe-ccEEEecCCHHHH
Q 010554 331 DFGSEIIPAAIMEH-DVQAYIF-RDYWEDIGTIKSF 364 (507)
Q Consensus 331 d~~~dil~~li~~~-~V~~~~~-~gyw~dIgt~~~y 364 (507)
.+..++++.+++++ +|++|.+ +++|.|||||++|
T Consensus 195 ~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 195 FYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred EEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 34578999999774 6999999 6999999999987
No 51
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.96 E-value=3.7e-28 Score=234.35 Aligned_cols=204 Identities=19% Similarity=0.309 Sum_probs=161.7
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|+|||||||.|+||.|+|...||+|+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+|... ..+ ..
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~-~~~-~~ 77 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSL-SSK-MI 77 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccc-cCC-ce
Confidence 6899999999999999999999999999999 99999999999999999999999999999999976553210 011 12
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHH--HHHcCCceEEEEEEcC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS--HVDRDADITISCAAVG 252 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~--h~~~~a~~tl~~~~~~ 252 (507)
+.+....+. ...|||++++++++++. ++|+|++||+++++|+.+++++ +..+++++|+++....
T Consensus 78 v~~~~~~~~-------~~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~ 143 (216)
T cd02507 78 VDVITSDLC-------ESAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLAS 143 (216)
T ss_pred EEEEEccCC-------CCCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEecc
Confidence 444433332 23699999999987763 7899999999999999999976 5566777777776554
Q ss_pred CCC-------CccceEEEECCC---CcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHH
Q 010554 253 ESR-------ASDYGLVKIDNM---GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (507)
Q Consensus 253 ~~~-------~~~~g~v~id~~---grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL 318 (507)
... ..+++++.+|++ .+++++.|++... ..+.+++++|...|+.. .++++.++|+|+|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~l~~~~~~~-i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 144 PPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDED--LELIIRKSLLSKHPNVT-IRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcC--cccccCHHHHhcCCCEE-EEcCcccccEEEecCcCC
Confidence 322 456899999987 5888888887643 34456788888777644 467999999999999864
No 52
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.95 E-value=4.4e-27 Score=234.77 Aligned_cols=234 Identities=18% Similarity=0.285 Sum_probs=168.4
Q ss_pred eEEEEEcCCCCCcccCCcc-CCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHH-HHHHHhcccCCCcccC
Q 010554 95 VAAIILGGGAGTKLFPLTL-RAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASL-NRHIARTYFGNGTNFG 171 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~-~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l-~~~l~~~~~~~~~~~~ 171 (507)
|++||||||.||||+|||. .+||+|+|++|.+|||+|+++++.+. ++++|+|+++++...+ .+++.+ . .
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~-~------ 72 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-G-L------ 72 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-c-C------
Confidence 6899999999999999996 79999999999339999999999998 5999999999865543 344431 0 0
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--CCHHHHHHHHHH---cCCceEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVD---RDADITI 246 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~--~dl~~ll~~h~~---~~a~~tl 246 (507)
..+.++.... .+||++|+..+..++.. ...++.++|++||+++. .+|.++++.|.+ .++.+|+
T Consensus 73 -~~~~ii~ep~---------~~gTa~ai~~a~~~~~~--~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~ 140 (274)
T cd02509 73 -PEENIILEPE---------GRNTAPAIALAALYLAK--RDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTF 140 (274)
T ss_pred -CCceEEECCC---------CCCcHHHHHHHHHHHHh--cCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 1134443222 26999999999888752 12346799999999886 567777776554 6777888
Q ss_pred EEEEcCCCCCccceEEEECCCC-----cEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHH
Q 010554 247 SCAAVGESRASDYGLVKIDNMG-----RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321 (507)
Q Consensus 247 ~~~~~~~~~~~~~g~v~id~~g-----rV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~l 321 (507)
.+.+... ...||++..+++. +|.+|.|||.....+.+. ....+++|+|+|+|+++.|.+.
T Consensus 141 gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~-------------~~g~~~wNsGiyi~~~~~l~~~ 205 (274)
T cd02509 141 GIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYL-------------ESGNYLWNSGIFLFRAKTFLEE 205 (274)
T ss_pred EeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHh-------------hcCCeEEECceeeeeHHHHHHH
Confidence 8877643 3679999998653 899999999754321110 0123689999999999988887
Q ss_pred HHhhCCCCC----------------chhhhhHHh--------hh--hcCcEEEEEeccEEEecCCHHH
Q 010554 322 LRWRYPTSN----------------DFGSEIIPA--------AI--MEHDVQAYIFRDYWEDIGTIKS 363 (507)
Q Consensus 322 l~~~~~~~~----------------d~~~dil~~--------li--~~~~V~~~~~~gyw~dIgt~~~ 363 (507)
++...|.-. .+..+.++. ++ +..++.+.+.+..|-|+|++++
T Consensus 206 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 206 LKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 776544211 111233332 11 2367888888889999999875
No 53
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.95 E-value=4.1e-26 Score=221.21 Aligned_cols=221 Identities=22% Similarity=0.338 Sum_probs=173.6
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
|||||||.|+||+| .+||+|+||+|+ |||+|+|+++.++|+++|+|+++++.+.+.+++.+ ++ ++
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~--------~~---~~ 65 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN--------PN---VE 65 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC--------CC---cE
Confidence 69999999999996 689999999999 99999999999999999999999988888777641 12 34
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEcCCC
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGES 254 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 254 (507)
++.... ..|++++++.+++++++ ..++|+++.||+ +...++.++++.|.+.++++++.+.+..+
T Consensus 66 ~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~- 131 (229)
T cd02540 66 FVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED- 131 (229)
T ss_pred EEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC-
Confidence 433211 25999999999988851 247899999998 34678999999998888888888777664
Q ss_pred CCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC---CCCc
Q 010554 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSND 331 (507)
Q Consensus 255 ~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~---~~~d 331 (507)
+..|+.+..|++|+|..+.|||...... ...+++++|+|+|+++.|.++++.... ....
T Consensus 132 -p~~~~~~~~~~~~~v~~~~ek~~~~~~~-----------------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~ 193 (229)
T cd02540 132 -PTGYGRIIRDGNGKVLRIVEEKDATEEE-----------------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEY 193 (229)
T ss_pred -CCCccEEEEcCCCCEEEEEECCCCChHH-----------------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCcE
Confidence 5679988888889999999987422100 012578999999999887777765432 2345
Q ss_pred hhhhhHHhhhhc-CcEEEEEeccE--EEecCCHHHH
Q 010554 332 FGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSF 364 (507)
Q Consensus 332 ~~~dil~~li~~-~~V~~~~~~gy--w~dIgt~~~y 364 (507)
+..++++.+++. .+|++|.++|| |+.|+||.++
T Consensus 194 ~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 194 YLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 678999999976 57999999877 7788888763
No 54
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.95 E-value=5.5e-27 Score=225.80 Aligned_cols=201 Identities=21% Similarity=0.293 Sum_probs=154.3
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCc-hHHHHHHHhcccCCCcccCCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~-~~l~~~l~~~~~~~~~~~~~~ 173 (507)
|+|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|.++|+++|+|++++.. +.+.+++.+..|... .. .
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~--~~-~ 76 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLK--QK-L 76 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccC--cc-e
Confidence 6899999999999999999999999999999 99999999999999999999999765 456666643212211 01 1
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCC
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 253 (507)
.+.+. .+. ...||+++|+.+...+ .++|+|++||++++.++.++++.|+.+++.+|+++.+...
T Consensus 77 ~~~~~--~~~-------~~~gt~~al~~~~~~i-------~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~ 140 (214)
T cd04198 77 DEVTI--VLD-------EDMGTADSLRHIRKKI-------KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPV 140 (214)
T ss_pred eEEEe--cCC-------CCcChHHHHHHHHhhc-------CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCC
Confidence 12222 111 2369999999998765 3789999999999999999999999999999999887642
Q ss_pred CC-----------CccceEEEECC-CCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHH
Q 010554 254 SR-----------ASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (507)
Q Consensus 254 ~~-----------~~~~g~v~id~-~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL 318 (507)
.. ...+.++.+|+ ++|++++.+... ..+.+.+++++|...|+.. .++++.++|+|+|++++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~--~~~~~~~~~~~l~~~~~~~-i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 141 SSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEED--LDEDLELRKSLLKRHPRVT-ITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred cccccCCcccccCCCCCceEEEcCCCCEEEEECCHHH--hhhhhhHHHHHHHhCCCEE-EEcCcccceEEEEEeeeC
Confidence 11 23467777775 578998865432 2235567888888777643 467999999999998764
No 55
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.92 E-value=7.1e-24 Score=226.31 Aligned_cols=240 Identities=16% Similarity=0.285 Sum_probs=165.3
Q ss_pred eEEEEEcCCCCCcccCCccC-CCccceeecC-cchhhHHHHHHHHhcCCCEEEEEeccCchH-HHHHHHhcccCCCcccC
Q 010554 95 VAAIILGGGAGTKLFPLTLR-AATPAVPVAG-CYRLIDIPMSNCINSGINKIFVLTQFNSAS-LNRHIARTYFGNGTNFG 171 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~-~PK~LlPI~g-~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~-l~~~l~~~~~~~~~~~~ 171 (507)
|.+||||||.||||+|||.. +||+|+|+.| + |||+|+++.|...++++++|+++..... +.+.+. .+ +
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~-~~-------~ 71 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLR-EI-------G 71 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHH-Hc-------C
Confidence 57999999999999999997 8999999977 7 9999999999999999999999865432 333332 21 1
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--CCHHHHHHHH---HHcCCceEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSH---VDRDADITI 246 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~--~dl~~ll~~h---~~~~a~~tl 246 (507)
.....++.... .+|||+|+..+..++.+.. ...+.++|++||+++. .+|.++++++ .+.++.+|+
T Consensus 72 ~~~~~~i~Ep~---------~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtl 141 (468)
T TIGR01479 72 KLASNIILEPV---------GRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTF 141 (468)
T ss_pred CCcceEEeccc---------ccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 11122332211 2699999998776663210 1234599999998764 3488888865 344566666
Q ss_pred EEEEcCCCCCccceEEEECC------CCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHH
Q 010554 247 SCAAVGESRASDYGLVKIDN------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (507)
Q Consensus 247 ~~~~~~~~~~~~~g~v~id~------~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ 320 (507)
...+..+ ...||++..++ .++|.+|.|||.......+ .....+++|+|+|+|+++.|.+
T Consensus 142 gi~p~~p--~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------l~~g~~~wNsGif~~~~~~ll~ 206 (468)
T TIGR01479 142 GIVPTHP--ETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAY-------------LESGDYYWNSGMFLFRASRYLA 206 (468)
T ss_pred EecCCCC--CCCceEEEeCCccCCCCceEEeEEEECCChHHHHHH-------------HhcCCeEEEeeEEEEEHHHHHH
Confidence 6655433 46799999873 2589999999975432111 0011378999999999887777
Q ss_pred HHHhhCCCC-----------------CchhhhhHH---------hhh-hcCcEEEEEeccEEEecCCHHHHHHHH
Q 010554 321 LLRWRYPTS-----------------NDFGSEIIP---------AAI-MEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (507)
Q Consensus 321 ll~~~~~~~-----------------~d~~~dil~---------~li-~~~~V~~~~~~gyw~dIgt~~~y~~An 368 (507)
.+++..|+- ..+..++++ .++ +..++++...+.+|.|+|++++|.+.-
T Consensus 207 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 207 ELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 666544321 111123444 122 235788888888999999999998874
No 56
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.91 E-value=7.4e-23 Score=200.08 Aligned_cols=226 Identities=16% Similarity=0.255 Sum_probs=157.5
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
+.|||||+|.++||. ||+|+|++|+ |||+|++++|..+ |+++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~--------~~-- 62 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES--------FG-- 62 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH--------cC--
Confidence 679999999999995 6999999999 9999999999998 99999998864 556666642 12
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHc-CCceEEEEEE
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDR-DADITISCAA 250 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~-~a~~tl~~~~ 250 (507)
+.++...+. +..||++ +..+...+. ...+.|++++||+ +...++..+++.|... ++++++++.+
T Consensus 63 -~~~~~~~~~-------~~~gt~~-~~~~~~~~~----~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~ 129 (239)
T cd02517 63 -GKVVMTSPD-------HPSGTDR-IAEVAEKLD----ADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATP 129 (239)
T ss_pred -CEEEEcCcc-------cCchhHH-HHHHHHhcC----CCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 333322221 1358886 445544443 1136799999997 4466789999998776 7888888887
Q ss_pred cCCCC----CccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC
Q 010554 251 VGESR----ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (507)
Q Consensus 251 ~~~~~----~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~ 326 (507)
++++. ...|+ +..|++|+|+.|.++|.....+ |. .....++++|+|+|++++|..+.+..
T Consensus 130 ~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~--~~~~~~~~~Giy~~~~~~~~~~~~~~- 193 (239)
T cd02517 130 ISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SS--EDFPYYKHIGIYAYRRDFLLRFAALP- 193 (239)
T ss_pred cCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CC--CCCceeEEEEEEEECHHHHHHHHhCC-
Confidence 75421 23344 4567779999998766422100 00 00136899999999999998765531
Q ss_pred CCCCchhhhhHH--hhhhc-CcEEEEEeccEEEecCCHHHHHHHHH
Q 010554 327 PTSNDFGSEIIP--AAIME-HDVQAYIFRDYWEDIGTIKSFYEANM 369 (507)
Q Consensus 327 ~~~~d~~~dil~--~li~~-~~V~~~~~~gyw~dIgt~~~y~~An~ 369 (507)
..... ..+.++ .++++ .+|+++..+++|.|||||++|.+|+.
T Consensus 194 ~~~~~-~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 194 PSPLE-QIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred Cchhh-hhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 11111 223333 34544 56999999999999999999999974
No 57
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.91 E-value=1.1e-22 Score=199.73 Aligned_cols=234 Identities=17% Similarity=0.195 Sum_probs=160.8
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
++.+||||+|.++||. +|+|+|++|+ |||+|+++.|.++|+++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~--------~~-- 62 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVEA--------FG-- 62 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH--------cC--
Confidence 4689999999999994 6999999999 999999999999999999998864 556666632 12
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-cCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~-~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
+.++...+. ++.||+++...+ ..++ ....+.+++++||+ +. ..++.++++.|+.+++++++++.+.
T Consensus 63 -~~v~~~~~~-------~~~gt~~~~~~~-~~~~---~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~ 130 (245)
T PRK05450 63 -GEVVMTSPD-------HPSGTDRIAEAA-AKLG---LADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPI 130 (245)
T ss_pred -CEEEECCCc-------CCCchHHHHHHH-HhcC---CCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeec
Confidence 233322221 235777655433 2221 01235699999999 44 4668899999987777777777666
Q ss_pred CC----CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC
Q 010554 252 GE----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (507)
Q Consensus 252 ~~----~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~ 327 (507)
.+ ..++.++++ +|++|+|++|.|||..+.... .++. ...++++++|+|+|++++|..+++. .+
T Consensus 131 ~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~----------~~~~-~~~~~~~~~Giy~~~~~~l~~~~~~-~~ 197 (245)
T PRK05450 131 HDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDA----------FADS-APTPVYRHIGIYAYRRGFLRRFVSL-PP 197 (245)
T ss_pred CCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCc----------cccc-cCccccEEEEEEecCHHHHHHHHhC-CC
Confidence 32 335567765 888899999999985331100 0000 0124789999999999999877653 22
Q ss_pred CCCchh--hhhHHhhhhcCcEEEEEecc-EEEecCCHHHHHHHHHHh
Q 010554 328 TSNDFG--SEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 328 ~~~d~~--~dil~~li~~~~V~~~~~~g-yw~dIgt~~~y~~An~~l 371 (507)
...+.. .++++.+.+..+|+++..+| +|.|||||+||.+|+..+
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 198 SPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred CccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 211111 12233333557899999996 999999999999999764
No 58
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=8.9e-22 Score=185.73 Aligned_cols=229 Identities=15% Similarity=0.223 Sum_probs=149.4
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEe-ccCchHHHHHHHhcccCCCccc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLT-QFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~-~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
|..|+|||||||.|+||.| ..||||+.++|+ ++|+|+|++|.++|+++++||+ +|+.+-+..++. .| .|
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~-~~-----~~ 70 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLK-KY-----PF 70 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHh-cC-----Cc
Confidence 4579999999999999999 899999999999 9999999999999999999999 888887777774 32 22
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
. .+++...... -.+|+.+|..+++++. +.|++++||++|...+ ++...+..+. ++.+..
T Consensus 71 ~---~~iv~N~~y~-------ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~---~e~l~~a~~~-~li~d~ 129 (239)
T COG1213 71 N---AKIVINSDYE-------KTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSI---LERLLEAPGE-GLIVDR 129 (239)
T ss_pred c---eEEEeCCCcc-------cCCceeEEeeehhhhc-------CcEEEEeCCEeecHHH---HHHHHhCcCC-cEEEec
Confidence 1 3444322211 1367899999988775 6799999999997654 4444443332 333332
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCC
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~ 330 (507)
.+......-.....+++|++..+..+-.. .+..++|++.|+++++..+.+-......
T Consensus 130 ~~~~~~~~ea~kv~~e~G~i~~igK~l~e-----------------------~~~e~iGi~~l~~~i~~~~~~~~~e~~~ 186 (239)
T COG1213 130 RPRYVGVEEATKVKDEGGRIVEIGKDLTE-----------------------YDGEDIGIFILSDSIFEDTYELLVERSE 186 (239)
T ss_pred cccccccCceeEEEecCCEEehhcCCccc-----------------------ccceeeeeEEechHHHHHHHHHHhhhhh
Confidence 22111111112233468999988654432 2457899999999987655442211111
Q ss_pred chhhhhHHhhh-hcCcEEEEEeccEEEecCCHHHHHHHHHHhhcc
Q 010554 331 DFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (507)
Q Consensus 331 d~~~dil~~li-~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~ 374 (507)
.-..++.+... ....+-......+|+||+||+|+.+|...+...
T Consensus 187 ~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~ 231 (239)
T COG1213 187 YDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPN 231 (239)
T ss_pred HHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHHH
Confidence 11122222221 111111111124799999999999999887653
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.87 E-value=7.8e-21 Score=185.63 Aligned_cols=225 Identities=17% Similarity=0.297 Sum_probs=153.1
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
++.|||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~--------~~- 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA--------FG- 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH--------cC-
Confidence 3789999999999994 4999999999 9999999999998 89999999864 566666642 12
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCC-ceEEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDA-DITISCA 249 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a-~~tl~~~ 249 (507)
++++...+. +..|+++ +..+...+. .+.|+++.||+ +...++.++++.|++.+. ++++++.
T Consensus 64 --~~v~~~~~~-------~~~g~~~-~~~a~~~~~------~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~ 127 (238)
T PRK13368 64 --GKVVMTSDD-------HLSGTDR-LAEVMLKIE------ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCA 127 (238)
T ss_pred --CeEEecCcc-------CCCccHH-HHHHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEE
Confidence 222222221 1247774 555544332 47899999996 557789999999876543 5566666
Q ss_pred EcCC-C---CCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhh
Q 010554 250 AVGE-S---RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (507)
Q Consensus 250 ~~~~-~---~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~ 325 (507)
+.+. . ++..+++ .++++|+++.+.|+|..... +.. ...++.++|+|+|++++|..+ +..
T Consensus 128 ~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~--------------~~~-~~~~~~n~giy~~~~~~l~~~-~~~ 190 (238)
T PRK13368 128 PISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRR--------------DGE-SARYLKHVGIYAFRRDVLQQF-SQL 190 (238)
T ss_pred EcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCC--------------CCC-CCceeEEEEEEEeCHHHHHHH-HcC
Confidence 5542 1 1344554 44567999999876521100 000 013589999999999999764 321
Q ss_pred CCCC-Cchhh-hhHHhhh-hcCcEEEEEeccEEEecCCHHHHHHHHHH
Q 010554 326 YPTS-NDFGS-EIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (507)
Q Consensus 326 ~~~~-~d~~~-dil~~li-~~~~V~~~~~~gyw~dIgt~~~y~~An~~ 370 (507)
.... .++.. +++ .++ ...++++|..+++|.|||||+||..|+..
T Consensus 191 ~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 191 PETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 1111 11222 445 454 45679999999999999999999999864
No 60
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.82 E-value=3e-19 Score=189.47 Aligned_cols=243 Identities=16% Similarity=0.277 Sum_probs=159.4
Q ss_pred ceEEEEEcCCCCCcccCCccC-CCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHH-HHHHhcccCCCcccC
Q 010554 94 NVAAIILGGGAGTKLFPLTLR-AATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN-RHIARTYFGNGTNFG 171 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~-~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~-~~l~~~~~~~~~~~~ 171 (507)
+|.+||||||.||||+|+|.. +||+|+|++|..|||+++++.+...++.+.+|+|+.....+. +.+. .. .. .
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~-~~-~~---~- 78 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLR-QL-NK---L- 78 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHH-hc-CC---c-
Confidence 389999999999999999998 799999996633999999999998888888888887655443 3332 11 10 0
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC--HHHHHHHHH---HcCCceEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD--YMDFIQSHV---DRDADITI 246 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d--l~~ll~~h~---~~~a~~tl 246 (507)
. ..++.... .++||-|+..+..++.......+.-++|+++||+..-. |.+.+.... +.+..+|+
T Consensus 79 ~--~~ii~EP~---------~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~ 147 (478)
T PRK15460 79 T--ENIILEPA---------GRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTF 147 (478)
T ss_pred c--ccEEecCC---------CCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 0 13333222 15899998877666642100113568899999987432 555544432 23555555
Q ss_pred EEEEcCCCCCccceEEEECCC---------CcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHH
Q 010554 247 SCAAVGESRASDYGLVKIDNM---------GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDV 317 (507)
Q Consensus 247 ~~~~~~~~~~~~~g~v~id~~---------grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~i 317 (507)
...|... ...||+++.++. -+|.+|.|||.......+.- .-.+++|+|+|+|+.+.
T Consensus 148 GI~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~-------------~G~y~WNsGiF~~~a~~ 212 (478)
T PRK15460 148 GIVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVA-------------SGEYYWNSGMFLFRAGR 212 (478)
T ss_pred ecCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHH-------------cCCEEEecceeheeHHH
Confidence 5444333 246999987642 26999999998765433211 12479999999999998
Q ss_pred HHHHHHhhCCCC--------------Cch--h-hhhHHh--------hh--hcCcEEEEEeccEEEecCCHHHHHHHH
Q 010554 318 LFKLLRWRYPTS--------------NDF--G-SEIIPA--------AI--MEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (507)
Q Consensus 318 L~~ll~~~~~~~--------------~d~--~-~dil~~--------li--~~~~V~~~~~~gyw~dIgt~~~y~~An 368 (507)
|...+++..|.- .++ . .+.++. ++ +..++.+.+.+--|-|+|++.++.+..
T Consensus 213 ~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 213 YLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred HHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 777666544420 010 0 122221 22 225688878777799999999998864
No 61
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=1.9e-17 Score=150.35 Aligned_cols=218 Identities=16% Similarity=0.233 Sum_probs=148.9
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|.|||||||.||||.|||...||+||.|.|+ |||+++++.|.++||++|+||++|..+++ ++|.+.| +
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy-------~--- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKY-------D--- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhc-------C---
Confidence 6799999999999999999999999999999 99999999999999999999999998876 6776544 2
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEE-EEEEcCC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITI-SCAAVGE 253 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl-~~~~~~~ 253 (507)
|+++....-. .-..-.++..++++|+ +..|+.+|....-++ ++.+.....- ++.....
T Consensus 69 vtLvyN~kY~-------~yNn~ySlyla~d~l~--------ntYiidsDnyl~kNi------f~~~~~~S~Yfav~~~~~ 127 (231)
T COG4750 69 VTLVYNPKYR-------EYNNIYSLYLARDFLN--------NTYIIDSDNYLTKNI------FLTKESHSKYFAVYRSGK 127 (231)
T ss_pred eEEEeCchHH-------hhhhHHHHHHHHHHhc--------ccEEeccchHhhhhh------hhcCcccceEEEEEecCC
Confidence 6666432210 1256788889998884 567889999775553 2222111111 1111111
Q ss_pred CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHH---HHHHHHhhCCC--
Q 010554 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDV---LFKLLRWRYPT-- 328 (507)
Q Consensus 254 ~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~i---L~~ll~~~~~~-- 328 (507)
...| .+..+.+|+|+++.-.-. ...+.+|+..|+... +..+++..+-.
T Consensus 128 --tnEw-~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e 180 (231)
T COG4750 128 --TNEW-LLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLE 180 (231)
T ss_pred --Ccee-EEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCch
Confidence 1123 355677899998864221 257789999998763 44455543321
Q ss_pred -CCchhhhhHHhhhhcCcEEEEEec-cEEEecCCHHHHHHHHHHhh
Q 010554 329 -SNDFGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 329 -~~d~~~dil~~li~~~~V~~~~~~-gyw~dIgt~~~y~~An~~ll 372 (507)
..-|-.++.-.-+++.++++-..+ +--+.+++.++|.+....++
T Consensus 181 ~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l 226 (231)
T COG4750 181 NRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFL 226 (231)
T ss_pred hhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhc
Confidence 112334455555666666665554 45778899999988777644
No 62
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=4.1e-17 Score=160.28 Aligned_cols=242 Identities=18% Similarity=0.301 Sum_probs=160.2
Q ss_pred eEEEEEcCCCCCcccCCcc-CCCccceeecCcchhhHHHHHHHHh-cCCCEEEEEeccCchHH-HHHHHhcccCCCcccC
Q 010554 95 VAAIILGGGAGTKLFPLTL-RAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASL-NRHIARTYFGNGTNFG 171 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~-~~PK~LlPI~g~ypLId~~L~~l~~-~Gi~~I~Vv~~~~~~~l-~~~l~~~~~~~~~~~~ 171 (507)
|.+||||||.||||+||+. ..||++|++.+...|++.++..+.. .+.++++|+|+..+..+ .+.+.+. +.. ...
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~--~~~-~~~ 78 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEI--DIE-NAA 78 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhh--hhc-ccc
Confidence 6899999999999999975 6999999996633999999999988 67899999999876543 3334320 000 111
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC--HHHHHHHHH---HcCCceEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD--YMDFIQSHV---DRDADITI 246 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d--l~~ll~~h~---~~~a~~tl 246 (507)
.++. ++.+ +.||-|+..+.-.+.. ...+.-++|+++||+..-. |.+.++... +.+..+|+
T Consensus 79 ----~ill--EP~g-------RnTApAIA~aa~~~~~--~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTf 143 (333)
T COG0836 79 ----GIIL--EPEG-------RNTAPAIALAALSATA--EGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTF 143 (333)
T ss_pred ----ceEe--ccCC-------CCcHHHHHHHHHHHHH--hCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEE
Confidence 1332 2211 4899999887655542 1223459999999988543 666665543 34554554
Q ss_pred EEEEcCCCCCccceEEEECCC------CcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHH
Q 010554 247 SCAAVGESRASDYGLVKIDNM------GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (507)
Q Consensus 247 ~~~~~~~~~~~~~g~v~id~~------grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ 320 (507)
...|... ...||+++..+. -+|.+|.|||.....+.+.- .-.+++|+|+|+|+...+.+
T Consensus 144 GI~Pt~P--eTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~-------------sG~y~WNSGmF~Fra~~~l~ 208 (333)
T COG0836 144 GIPPTRP--ETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVE-------------SGEYLWNSGMFLFRASVFLE 208 (333)
T ss_pred ecCCCCC--ccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHH-------------cCceEeeccceEEEHHHHHH
Confidence 4444322 247999987541 27999999998765432211 12389999999999998777
Q ss_pred HHHhhCCCC-------------Cchh---hhh--------HHhhh--hcCcEEEEEeccEEEecCCHHHHHHHHH
Q 010554 321 LLRWRYPTS-------------NDFG---SEI--------IPAAI--MEHDVQAYIFRDYWEDIGTIKSFYEANM 369 (507)
Q Consensus 321 ll~~~~~~~-------------~d~~---~di--------l~~li--~~~~V~~~~~~gyw~dIgt~~~y~~An~ 369 (507)
.+++..|.- .++. .+. +.+++ +..++.+.+.+-.|-|+|++.++++...
T Consensus 209 e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~ 283 (333)
T COG0836 209 ELKKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLD 283 (333)
T ss_pred HHHhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhh
Confidence 666554420 0110 111 11222 2367888888888999999999887653
No 63
>PLN02917 CMP-KDO synthetase
Probab=99.75 E-value=2e-16 Score=159.09 Aligned_cols=234 Identities=15% Similarity=0.157 Sum_probs=154.2
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
++.+||||+|.++||. +|+|+|++|+ |||+|+++.+..++..+.+| +.++.+.+.+++.+ ++
T Consensus 47 ~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VV-V~~~~e~I~~~~~~--------~~-- 108 (293)
T PLN02917 47 RVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIV-VATDDERIAECCRG--------FG-- 108 (293)
T ss_pred cEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEE-EECChHHHHHHHHH--------cC--
Confidence 5789999999999994 4999999999 99999999999876544433 34566777666641 11
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEE--EEE
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITI--SCA 249 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl--~~~ 249 (507)
++++...+.. ..||+++ ..+...++ ...+.++++.||. +....+..+++.+.+. +++++ ++.
T Consensus 109 -v~vi~~~~~~-------~~GT~~~-~~a~~~l~----~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~ 174 (293)
T PLN02917 109 -ADVIMTSESC-------RNGTERC-NEALKKLE----KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVT 174 (293)
T ss_pred -CEEEeCCccc-------CCchHHH-HHHHHhcc----CCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEee
Confidence 2333211211 2488887 46666663 1246899999999 3345688999988654 33433 333
Q ss_pred EcCCCCCccceEEE--ECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC
Q 010554 250 AVGESRASDYGLVK--IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (507)
Q Consensus 250 ~~~~~~~~~~g~v~--id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~ 327 (507)
+...+++.+||.++ .|++|+++.|..++-.+.... +++ .....+.++|+|+|+.+.|. .+....+
T Consensus 175 ~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~----------~~~--~~~i~~~n~Giy~f~~~~L~-~l~~l~~ 241 (293)
T PLN02917 175 SLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG----------KVN--PQFPYLLHLGIQSYDAKFLK-IYPELPP 241 (293)
T ss_pred ecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc----------ccc--cccceEEEEEEEEeCHHHHH-HHHcCCC
Confidence 34444577899886 687898776654322110000 000 11236889999999999998 4443322
Q ss_pred ---CCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 328 ---TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 328 ---~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
+...++++++ .+-...+|.++..+.....|||++++..++..+.+
T Consensus 242 ~n~e~e~yLtdl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 242 TPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred CcccchhccHHHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 2455667766 33344678888877667799999999999998754
No 64
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.61 E-value=3.5e-14 Score=136.78 Aligned_cols=210 Identities=14% Similarity=0.144 Sum_probs=139.8
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCc-hHHHHHHHhcccCCCcccCCCe
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~-~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|||||||.|+||.. ..||+|+|++|+ |||+|+++++.++ ++++|+|++++.. +.+..++. . . ..
T Consensus 2 aiIlAaG~s~R~~~---~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-----~--~---~~ 67 (217)
T TIGR00453 2 AVIPAAGRGTRFGS---GVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLV-----A--R---AV 67 (217)
T ss_pred EEEEcCcccccCCC---CCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhh-----c--C---Cc
Confidence 79999999999973 479999999999 9999999999998 8999999998764 33333232 1 0 01
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
++++. +. .+..++++.+...++ ..+.++++.||. +....+..+++.+++.+ +++++.+..
T Consensus 68 ~~~~~--~~---------~~~~~sl~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~ 129 (217)
T TIGR00453 68 PKIVA--GG---------DTRQDSVRNGLKALK-----DAEWVLVHDAARPFVPKELLDRLLEALRKAG--AAILALPVA 129 (217)
T ss_pred EEEeC--CC---------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--cEEEeEecc
Confidence 33331 11 134577888776551 246899999998 33456788888876643 344444443
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCch
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~ 332 (507)
.++..+|++|.+..+.|+.. -....+ .|.|+...|.++++........
T Consensus 130 ------~~v~~~~~~g~~~~~~~r~~------------------------~~~~~~-p~~f~~~~l~~~~~~~~~~~~~- 177 (217)
T TIGR00453 130 ------DTLKRVEADGFIVETVDREG------------------------LWAAQT-PQAFRTELLKKALARAKEEGFE- 177 (217)
T ss_pred ------ceEEEEcCCCceeecCChHH------------------------eEEEeC-CCcccHHHHHHHHHHHHhcCCC-
Confidence 34555566677877765321 123444 5999999998887643222222
Q ss_pred hhhhHHhhh-hcCcEEEEEeccEEEecCCHHHHHHHHHH
Q 010554 333 GSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (507)
Q Consensus 333 ~~dil~~li-~~~~V~~~~~~gyw~dIgt~~~y~~An~~ 370 (507)
..|....+. ...++..+..+..+.+|+|++||..|...
T Consensus 178 ~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 178 ITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred CCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 233332222 24678777777677899999999888753
No 65
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.60 E-value=5.6e-14 Score=136.37 Aligned_cols=218 Identities=17% Similarity=0.145 Sum_probs=141.3
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCc-hHHHHHHHhcccCCCccc
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNS-ASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~-~~l~~~l~~~~~~~~~~~ 170 (507)
..+.+||||||.|+||. ...||+|+|++|+ |||+|+++++..++ +++|+|++++.. +.+.+++. .. .
T Consensus 2 ~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~----~~---~ 70 (227)
T PRK00155 2 MMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLL----AK---D 70 (227)
T ss_pred CceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhh----cc---C
Confidence 35789999999999995 3579999999999 99999999999865 899999998765 33322221 10 0
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISC 248 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~ 248 (507)
..+.++. .. .+.+++++.+...++ ..+.++++.||. +....+..+++.+.+.+ ..+++
T Consensus 71 --~~~~~~~--~~---------~~~~~sv~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~ 130 (227)
T PRK00155 71 --PKVTVVA--GG---------AERQDSVLNGLQALP-----DDDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILA 130 (227)
T ss_pred --CceEEeC--Cc---------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEE
Confidence 1133331 11 256899998877663 146789999998 33456889999887654 33444
Q ss_pred EEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC
Q 010554 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (507)
Q Consensus 249 ~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~ 328 (507)
.+..+ .+.. ++++|.+..+.+ .... .... +.|.|+.+.|.++++...+.
T Consensus 131 ~~~~~----~~~~--v~~~g~~~~~~~---r~~~---------------------~~~~-~p~~f~~~~l~~~~~~~~~~ 179 (227)
T PRK00155 131 VPVKD----TIKR--SDDGGGIVDTPD---RSGL---------------------WAAQ-TPQGFRIELLREALARALAE 179 (227)
T ss_pred Eeccc----cEEE--EcCCCceeecCC---hHHh---------------------eeee-CCccchHHHHHHHHHHHHhc
Confidence 44433 1222 355666665532 1110 1223 37999999998887653322
Q ss_pred CCchhhhhHHhhh-hcCcEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 329 SNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 329 ~~d~~~dil~~li-~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
. .+..+....+. ...++..+..+..+++|+|++||..|...+.+
T Consensus 180 ~-~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 180 G-KTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred C-CCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHh
Confidence 1 22233222222 23567777766678899999999999876543
No 66
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.58 E-value=6.4e-14 Score=134.82 Aligned_cols=212 Identities=17% Similarity=0.197 Sum_probs=140.3
Q ss_pred EEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
.+||||||.|+||.+ ..||+|+|++|+ |||+|+++++..++ +++|+|++++........+. .+ . .. ..
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~-~~-~----~~-~~ 70 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELA-KY-G----LS-KV 70 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHH-hc-c----cC-CC
Confidence 589999999999985 379999999999 99999999999976 99999999887655544331 11 0 00 11
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
+.++... .+..++++.+...+++ ...+.++++.||+ +....+..+++.+...++ .+.+.+..
T Consensus 71 ~~~~~~~-----------~~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~~ 134 (218)
T cd02516 71 VKIVEGG-----------ATRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPVT 134 (218)
T ss_pred eEEECCc-----------hHHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEecc
Confidence 3333211 2457888888776631 1246789999998 334557889998866543 33444433
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCch
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~ 332 (507)
+ ++...|++|.+..+.+..+ -....++ ++|+.+.|.+++....+... +
T Consensus 135 ~------~~~~~~~~g~~~~~~~r~~------------------------~~~~~~P-~~f~~~~~~~~~~~~~~~~~-~ 182 (218)
T cd02516 135 D------TIKRVDDDGVVVETLDREK------------------------LWAAQTP-QAFRLDLLLKAHRQASEEGE-E 182 (218)
T ss_pred c------cEEEecCCCceeecCChHH------------------------hhhhcCC-CcccHHHHHHHHHHHHhcCC-C
Confidence 2 2334677888888876321 1355677 89999999988875433322 2
Q ss_pred hhhhHHhhhhc-CcEEEEEeccEEEecCCHHHHHH
Q 010554 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYE 366 (507)
Q Consensus 333 ~~dil~~li~~-~~V~~~~~~gyw~dIgt~~~y~~ 366 (507)
.+|...-+.+. .++..+..+..-+||+||+||..
T Consensus 183 ~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 183 FTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred cCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 34433222222 46766665555669999999954
No 67
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.56 E-value=2.8e-13 Score=140.59 Aligned_cols=208 Identities=13% Similarity=0.112 Sum_probs=139.2
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCccc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
|.++.+||||||.|+||. ...||+++|++|+ |||+|+++.+.+++ +++|+|++++......+.+. . .+
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~----~---~~ 71 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKAL----P---EI 71 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhc----c---cC
Confidence 556899999999999994 4689999999999 99999999999987 79999999876554433321 1 11
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-CCHHHHHHHHHHcCCceEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISC 248 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~~-~dl~~ll~~h~~~~a~~tl~~ 248 (507)
. .+.++. .. .+..++++.++..++ .+.++|..||. +.+ ..+..+++..++. +.++.+
T Consensus 72 ~--~v~~v~--gG---------~~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~ 130 (378)
T PRK09382 72 K--FVTLVT--GG---------ATRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDKA--DCVLPA 130 (378)
T ss_pred C--eEEEeC--CC---------chHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEE
Confidence 1 133331 11 246788998887764 36788999986 333 4467777766543 567777
Q ss_pred EEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC
Q 010554 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (507)
Q Consensus 249 ~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~ 328 (507)
.++.+ ...|+...+|. ..+..+ ++|+... .+.|.+..+ .
T Consensus 131 ~pv~D--tik~~~~tldR-~~l~~~-QTPQ~f~---------------------------------~~~l~~a~~----~ 169 (378)
T PRK09382 131 LPVAD--TLKRANETVDR-EGLKLI-QTPQLSR---------------------------------TKTLKAAAD----G 169 (378)
T ss_pred EEecc--CcEEeeeEcCc-ccEEEE-ECCCCCC---------------------------------HHHHHHHHh----C
Confidence 77766 34566555553 355544 7776432 111222111 1
Q ss_pred CCchhhhhHHhhh-hcCcEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 329 SNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 329 ~~d~~~dil~~li-~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
..+ .+|..+.+. ...+|..+..+..|.+|++|+||..|+..+..
T Consensus 170 ~~~-~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 170 RGD-FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCC-cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 222 244444433 34688888888899999999999999987643
No 68
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.55 E-value=3.6e-13 Score=129.89 Aligned_cols=215 Identities=19% Similarity=0.235 Sum_probs=137.8
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
++.|||||+|.|+||. .|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++.+ + +.
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~-~-------~~ 63 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARK-Y-------GA 63 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHH-h-------CC
Confidence 3679999999999994 4999999999 99999999999987 788887763 4445554431 1 10
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
.+.+.......+ ...|+.++++.++..+++. ....+.++++.||+ +...++.++++.|...+++.++.+.+
T Consensus 64 -~~~~~~~~~~~~-----~~~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~ 136 (223)
T cd02513 64 -EVPFLRPAELAT-----DTASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTE 136 (223)
T ss_pred -CceeeCChHHCC-----CCCCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 011221111000 0137899999988777521 01136899999999 55677899999998877887777766
Q ss_pred cCCCCCccceEEEECCCC-cEEEEEeC--CCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC
Q 010554 251 VGESRASDYGLVKIDNMG-RIAQFAEK--PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~g-rV~~~~eK--p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~ 327 (507)
..+. ..++... +++| .+..+.++ +...+. ...+..++|+|+++++.|.+.
T Consensus 137 ~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~q~~------------------~~~~~~n~~~y~~~~~~~~~~------ 189 (223)
T cd02513 137 FHRF--PWRALGL-DDNGLEPVNYPEDKRTRRQDL------------------PPAYHENGAIYIAKREALLES------ 189 (223)
T ss_pred cCcC--cHHheee-ccCCceeccCcccccCCcCCC------------------hhHeeECCEEEEEEHHHHHhc------
Confidence 5431 2233322 2223 22222111 100000 012567889999999987431
Q ss_pred CCCchhhhhHHhhhhcCcEEEEEecc-EEEecCCHHHHHHHHHH
Q 010554 328 TSNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMA 370 (507)
Q Consensus 328 ~~~d~~~dil~~li~~~~V~~~~~~g-yw~dIgt~~~y~~An~~ 370 (507)
.. + -..++..|..+. .-.||+|++||..|...
T Consensus 190 -~~-~---------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~ 222 (223)
T cd02513 190 -NS-F---------FGGKTGPYEMPRERSIDIDTEEDFELAEAL 222 (223)
T ss_pred -CC-c---------cCCCeEEEEeCccceeCCCCHHHHHHHHHh
Confidence 00 0 156788887776 58999999999888653
No 69
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.53 E-value=8.9e-14 Score=130.60 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|.|||||||+|+||.+ .||+|+|++|+ |||+|+++++..+++++|+|+++++.+.+..|+.+.+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6899999999999975 79999999999 9999999999999999999999988888877775211
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--cCCHHHHHHHHHHcCCceEEEEE
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~--~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
..+.. +. -.|...++..++..+. ..++|++++||+.+ ...+..+++.+...+...+..+.
T Consensus 65 ~~~~~---~~-------g~G~~~~l~~al~~~~-----~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~ 126 (183)
T TIGR00454 65 KDYKN---AS-------GKGYIEDLNECIGELY-----FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMI 126 (183)
T ss_pred cEEEe---cC-------CCCHHHHHHHHhhccc-----CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEe
Confidence 11221 11 1477778887765432 24789999999844 56688899988766555444443
No 70
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.53 E-value=8.8e-13 Score=129.10 Aligned_cols=228 Identities=15% Similarity=0.204 Sum_probs=141.5
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
+||+|+|.|+||. +|+|+|++|+ |||.|+++++..+++++|+|++.. +.+.+++. . ++ ++
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~-~-------~g---~~ 61 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATDD--ESVAQTCQ-K-------FG---IE 61 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHH-H-------cC---CE
Confidence 7999999999994 6999999999 999999999999899999998864 34555543 1 22 22
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-cCCHHHHHHHHHHcCCceEEEEEEcCCC
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVGES 254 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 254 (507)
++...+. ...|+.... .+...+.. ...+.++++.||. +. ...+.++++.+++.+++++.++.+..+.
T Consensus 62 ~v~~~~~-------~~~Gt~r~~-~~~~~l~~---~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~ 130 (238)
T TIGR00466 62 VCMTSKH-------HNSGTERLA-EVVEKLAL---KDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDA 130 (238)
T ss_pred EEEeCCC-------CCChhHHHH-HHHHHhCC---CCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCH
Confidence 2211111 012544333 33332310 1235688899999 33 4557888888866667777777776541
Q ss_pred CC---ccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCc
Q 010554 255 RA---SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (507)
Q Consensus 255 ~~---~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d 331 (507)
.. .+...+..|.+|+...|...+-......+ .....|+. ..++...|+|.|+.++|.++.... ++...
T Consensus 131 ~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~-----~~~~tpq~---~~~~~h~Giy~~~~~~L~~~~~~~-~~~le 201 (238)
T TIGR00466 131 EEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFF-----AKRQTPVG---DNLLRHIGIYGYRAGFIEEYVAWK-PCVLE 201 (238)
T ss_pred HHccCCCceEEEeCCCCeEEEecCCCCCCCCCcc-----cccccccc---cceeEEEEEEeCCHHHHHHHHhCC-CCccc
Confidence 11 11333444777888777654321110000 00122221 125778999999999999887642 22111
Q ss_pred h--hhhhHHhhhhcCcEEEEEeccE-EEecCCHHHH
Q 010554 332 F--GSEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSF 364 (507)
Q Consensus 332 ~--~~dil~~li~~~~V~~~~~~gy-w~dIgt~~~y 364 (507)
- .-|.|..+-...+|.+...+.. -..|+||+|+
T Consensus 202 ~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 202 EIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred ccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 1 1244555556788988888755 4589999987
No 71
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.51 E-value=1.5e-13 Score=125.66 Aligned_cols=120 Identities=19% Similarity=0.297 Sum_probs=92.8
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
|||||||.|+||. .||+|+|++|+ |||+|+++.+.+.++++|+|++++ +.+..++. +++ ++
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~--------~~~---~~ 61 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLE--------RYG---IK 61 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHT--------TTT---SE
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHh--------ccC---ce
Confidence 7999999999997 49999999999 999999999999999999999988 34444442 112 44
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--cCCHHHHHHHHHHcCCceEEEE
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISC 248 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~--~~dl~~ll~~h~~~~a~~tl~~ 248 (507)
++.... |..|+.++|+.+...+. ..++|++++||+.+ ...+..+++.+.+.++++++..
T Consensus 62 ~v~~~~--------~~~G~~~sl~~a~~~~~-----~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~ 122 (160)
T PF12804_consen 62 VVVDPE--------PGQGPLASLLAALSQLP-----SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV 122 (160)
T ss_dssp EEE-ST--------SSCSHHHHHHHHHHTST-----TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred EEEecc--------ccCChHHHHHHHHHhcc-----cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence 443322 12599999999987662 35899999999944 4457899999887777765544
No 72
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.50 E-value=6.8e-13 Score=124.48 Aligned_cols=119 Identities=13% Similarity=0.223 Sum_probs=88.6
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
+||||||.|+||. .||+|+|++|+ |||+|+++.+.++++++|+|++++..+.+.+++.+ .++ +.
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~-------~~~---v~ 65 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLAN-------HSN---IT 65 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhcc-------CCC---eE
Confidence 7999999999997 48999999999 99999999999999999999999887665444321 122 45
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee--ccCCHHHHHHHHHHcCCce
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADI 244 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i--~~~dl~~ll~~h~~~~a~~ 244 (507)
++.... +..|++++++.++.+ . ...+.++++.||+- ....+..+++.+...+.++
T Consensus 66 ~v~~~~--------~~~g~~~si~~~l~~-~----~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 66 LVHNPQ--------YAEGQSSSIKLGLEL-P----VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred EEECcC--------hhcCHHHHHHHHhcC-C----CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 443221 225899999988752 1 12478999999993 3456788888877665543
No 73
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.48 E-value=1.6e-12 Score=126.46 Aligned_cols=217 Identities=14% Similarity=0.119 Sum_probs=135.2
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchH-HHHHHHhcccCCCcccCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSAS-LNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~-l~~~l~~~~~~~~~~~~~ 172 (507)
+.+||||||.|+||. ...||+|+|++|+ |||.|+++++.++ .+++|+|+++..... +.+.+. .| + +..
T Consensus 3 ~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~-~~-~----~~~ 72 (230)
T PRK13385 3 YELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMK-QL-N----VAD 72 (230)
T ss_pred eEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHH-hc-C----cCC
Confidence 689999999999996 3579999999999 9999999999876 589999999764422 223332 22 1 101
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-CCHHHHHHHHHHcCCceEEEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~~-~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
..++++... .+..++++.++..++ ..+.++++.||. +.. ..+.++++.+.+.++. +.+.+
T Consensus 73 ~~~~~v~~g-----------~~r~~sv~~gl~~~~-----~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~~ 134 (230)
T PRK13385 73 QRVEVVKGG-----------TERQESVAAGLDRIG-----NEDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAVE 134 (230)
T ss_pred CceEEcCCC-----------chHHHHHHHHHHhcc-----CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEEe
Confidence 123443210 133588888876663 135578889999 334 4478888888766543 33334
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCC
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~ 330 (507)
+.+ .+... ++|.+....+ . .. .+.--+.|.|+.+.|.+..+.......
T Consensus 135 ~~d------ti~~~-~~~~~~~~i~--r-~~----------------------~~~~qtpq~f~~~~l~~~~~~~~~~~~ 182 (230)
T PRK13385 135 VKD------TVKRV-KDKQVIETVD--R-NE----------------------LWQGQTPQAFELKILQKAHRLASEQQF 182 (230)
T ss_pred ccc------eEEEE-cCCeeEeccC--H-HH----------------------HhhhcCCceeeHHHHHHHHHHHHhcCC
Confidence 332 12222 2354433322 1 11 122234689999888877664222222
Q ss_pred chhhhhHHhhh-hcCcEEEEEeccEEEecCCHHHHHHHHHHhh
Q 010554 331 DFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 331 d~~~dil~~li-~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll 372 (507)
+.++....+. ...+|..+.-+.....|+||+|+..|...+.
T Consensus 183 -~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 183 -LGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred -CcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 2333222222 3467777777778899999999999987664
No 74
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.42 E-value=1.8e-12 Score=121.00 Aligned_cols=120 Identities=18% Similarity=0.336 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
+.+||||||.|+||.+ ||+|+|++|+ |||+|+++.+...++++|+|+++++...+.+++. .++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~--------~~~--- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALA--------GLP--- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhc--------CCC---
Confidence 4689999999999985 9999999999 9999999999999999999999887655543331 112
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCc
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDAD 243 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~ 243 (507)
+.++.... +..|++++++.++..+.. ..+.++++.||+ +....+..+++.+...+++
T Consensus 64 ~~~~~~~~--------~~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 64 VVVVINPD--------WEEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred eEEEeCCC--------hhhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 33332221 125999999999877641 247899999999 3345678888877654443
No 75
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.42 E-value=4e-13 Score=130.50 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=78.1
Q ss_pred CchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCcCCCceec-ceeee-ce
Q 010554 330 NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCRIK-DA 407 (507)
Q Consensus 330 ~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~-~~~I~-~s 407 (507)
.+| .|.+|.+++.+ ++.++|||.|+ ++|+++|+++|..... ..............+...+.|+ .+.|. .+
T Consensus 28 ~~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~-~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v 99 (231)
T TIGR03532 28 VDF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRI-ENDRRNSAIPLLDLKNINARIEPGAIIRDQV 99 (231)
T ss_pred ccc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEE-eecccccccccccccccccEECCCCEEeCCe
Confidence 445 57888888766 88899999999 9999999999976421 0000000000000111222333 12222 34
Q ss_pred EEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEec--------CCCCc
Q 010554 408 IISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN--------KDDVQ 477 (507)
Q Consensus 408 iIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~--------~~~~~ 477 (507)
.||++|.|+ ++.|... +.++++ |.|+.+++|. +|+||++|.||.++.|.+ ...++
T Consensus 100 ~IG~~~~I~~~~~I~~~------------~~IG~~---~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IG 164 (231)
T TIGR03532 100 IIGDNAVIMMGAVINIG------------AEIGEG---TMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIE 164 (231)
T ss_pred EECCCCEEecCcccCCC------------eEECCC---CEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEEC
Confidence 555555554 3333211 122444 4455555553 555555555555555543 12233
Q ss_pred cCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 478 EADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 478 e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+......+..|.+| ++||++++|++|++
T Consensus 165 d~v~IG~gsvI~~g-~~Ig~~~~Igagsv 192 (231)
T TIGR03532 165 DNVLIGANAVILEG-VRVGKGAVVAAGAI 192 (231)
T ss_pred CCcEECCCCEEcCC-CEECCCCEECCCCE
Confidence 33333333444444 55666666666654
No 76
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.41 E-value=2.8e-11 Score=119.24 Aligned_cols=223 Identities=13% Similarity=0.099 Sum_probs=133.7
Q ss_pred CCCCCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHHHHHHHhcccCC
Q 010554 88 RRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGN 166 (507)
Q Consensus 88 ~~~~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l~~~l~~~~~~~ 166 (507)
..+.+..+.+||||||.|+||. ...||+++|++|+ |||+|+++.+.+. ++++|+|++++......+.+.+.+
T Consensus 18 ~~~~~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~--- 90 (252)
T PLN02728 18 AVVKEKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENI--- 90 (252)
T ss_pred cccccCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhc---
Confidence 4445667899999999999996 3589999999999 9999999999984 899999999876544333322211
Q ss_pred CcccCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCc--e-ec-cCCHHHHHHHHHHcCC
Q 010554 167 GTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGD--H-LY-RMDYMDFIQSHVDRDA 242 (507)
Q Consensus 167 ~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD--~-i~-~~dl~~ll~~h~~~~a 242 (507)
+ ..+.+.. .. .+..++++.++..++ .+..+|+.+| . +. ...+..+++...+.++
T Consensus 91 ----~-~~i~~v~--gg---------~~r~~SV~~gl~~l~------~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga 148 (252)
T PLN02728 91 ----D-VPLKFAL--PG---------KERQDSVFNGLQEVD------ANSELVCIHDSARPLVTSADIEKVLKDAAVHGA 148 (252)
T ss_pred ----C-CceEEcC--CC---------CchHHHHHHHHHhcc------CCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCe
Confidence 1 1133221 11 134677888876663 1334566666 3 33 3346788887777664
Q ss_pred ceEEEEEEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHH
Q 010554 243 DITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLL 322 (507)
Q Consensus 243 ~~tl~~~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll 322 (507)
.+...++.+ .+..+++++.|.. .+....... ...| ..|+.+.|.+..
T Consensus 149 --~i~~~~~~d------tik~v~~~~~v~~---t~~R~~l~~--------~QTP--------------Q~F~~~~l~~a~ 195 (252)
T PLN02728 149 --AVLGVPVKA------TIKEANSDSFVVK---TLDRKRLWE--------MQTP--------------QVIKPELLRRGF 195 (252)
T ss_pred --EEEeecchh------hEEEecCCCceee---ccChHHeEE--------EeCC--------------ccchHHHHHHHH
Confidence 345555433 2333444554433 232221100 0111 357777776665
Q ss_pred HhhCCCCCchhhhhHHhh-hhcCcEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 323 RWRYPTSNDFGSEIIPAA-IMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 323 ~~~~~~~~d~~~dil~~l-i~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
+........ .+|-...+ ....+|....-+..-+-|.||+|+..|...+..
T Consensus 196 ~~~~~~~~~-~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~ 246 (252)
T PLN02728 196 ELVEREGLE-VTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNE 246 (252)
T ss_pred HHHHhcCCC-cCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhh
Confidence 543222222 23322221 123567766555567889999999999876543
No 77
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.39 E-value=8.4e-12 Score=116.58 Aligned_cols=107 Identities=12% Similarity=0.181 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
+.+||||||.|+||.+ ||+|+|++|+ |||+|+++.+... +++|+|++++..+.. . .++
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~~---~---------~~~--- 58 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQERY---A---------LLG--- 58 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHHH---h---------hcC---
Confidence 4689999999999983 9999999999 9999999999987 899999998875431 1 111
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-c-CCHHHHHHHH
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSH 237 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~-~dl~~ll~~h 237 (507)
++++.... +..|..++++.++..++ .+.++++.||+-+ + ..+..+++.+
T Consensus 59 ~~~v~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 59 VPVIPDEP--------PGKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CcEeeCCC--------CCCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 33333211 23589999999876653 4789999999933 3 4467777665
No 78
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.35 E-value=8e-12 Score=106.42 Aligned_cols=99 Identities=31% Similarity=0.509 Sum_probs=83.0
Q ss_pred Cceec-ceeeeceEEcCCcEEccceEeeeeE---EeeccCceE-eeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEE
Q 010554 396 PTKID-NCRIKDAIISHGCFLRECTVEHSIV---DYYQTESEI-ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI 470 (507)
Q Consensus 396 p~~i~-~~~I~~siIg~gc~I~~~~I~~Sii---~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i 470 (507)
|++++ +++|++|+||++|.|+++.|++|++ ..++.+++| .|+++++ +.||++++|.+|+|+++++||+++++
T Consensus 1 p~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~---~~Ig~~~~i~~siig~~~~Ig~~~~v 77 (104)
T cd04651 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN---VGIGRNAVIRRAIIDKNVVIPDGVVI 77 (104)
T ss_pred CceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC---CEECCCCEEEeEEECCCCEECCCCEE
Confidence 45665 5889999999999999889999999 478999999 4999999 89999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCeEEcCCeEEEcCCCEe
Q 010554 471 VNKDDVQEADRPELGFYIRSGITIIMEKATI 501 (507)
Q Consensus 471 ~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i 501 (507)
.+.... + ...+++..+|+++|++++++
T Consensus 78 ~~~~~~-~---~~~~~~~~~~~~~~~~~~~~ 104 (104)
T cd04651 78 GGDPEE-D---RARFYVTEDGIVVVGKGMVI 104 (104)
T ss_pred CCCccc-c---cccceEcCCeEEEEecccCC
Confidence 885222 1 13556668999999998764
No 79
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.35 E-value=4.5e-11 Score=113.08 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=81.3
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
|..|.+||||||.|+||. ..||+++|++|+ |||+|+++.+. .++++|+|+++...+.+ . . ++
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~-~-------~~ 62 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARY----A-A-------FG 62 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHH----H-h-------cC
Confidence 346899999999999995 379999999999 99999999998 78999999987653322 1 1 11
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-CCHHHHHHHHHHc
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDR 240 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~~-~dl~~ll~~h~~~ 240 (507)
+.++.... . ...|+.++++.++...+ .+.++++.||+ +.. ..+..+++.+.+.
T Consensus 63 ---~~~v~~~~-~------~~~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 117 (193)
T PRK00317 63 ---LPVIPDSL-A------DFPGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAGKD 117 (193)
T ss_pred ---CcEEeCCC-C------CCCCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhhcC
Confidence 23332111 0 12488889988876442 47899999999 444 3467777655433
No 80
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.33 E-value=8.3e-11 Score=109.55 Aligned_cols=122 Identities=18% Similarity=0.310 Sum_probs=94.1
Q ss_pred CCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCccc
Q 010554 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 91 ~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
.+..+.+||||||.|+||. .+|-|+|+.|+ ||++++++...++++++++|+++|.......... .
T Consensus 2 ~~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~----~----- 66 (199)
T COG2068 2 RPSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALL----A----- 66 (199)
T ss_pred CCcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhh----c-----
Confidence 3567899999999999998 89999999999 9999999999999999999999997322221111 1
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHc
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDR 240 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~ 240 (507)
...++++... +|.+|.+.+++.+...+.. ..+-++++.||+ +...++..+++.++.+
T Consensus 67 -~~~~~~v~np--------d~~~Gls~Sl~ag~~a~~~----~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 67 -QLGVTVVVNP--------DYAQGLSTSLKAGLRAADA----EGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred -cCCeEEEeCc--------chhhhHhHHHHHHHHhccc----CCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 1125565433 2558999999998877652 125799999999 5567788888887766
No 81
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=7.4e-12 Score=132.03 Aligned_cols=83 Identities=14% Similarity=0.364 Sum_probs=71.8
Q ss_pred ccCCCcCCCceec-ceeeeceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCC
Q 010554 388 YTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDK 460 (507)
Q Consensus 388 ~~~~~~~~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~ 460 (507)
.....+..+++|+ +++|.||+||.||.|+ +++|.+|.| +.||.+++|. ++|+++ +.|++||++. +||||.
T Consensus 331 ~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~---v~i~~~~~l~~g~vl~~ 407 (673)
T KOG1461|consen 331 GANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD---VKIGEGAILKPGSVLGF 407 (673)
T ss_pred cceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC---cEeCCCcccCCCcEEee
Confidence 3344556677887 6999999999999999 899999999 5899999995 999999 9999999995 799999
Q ss_pred CCEECCCcEEecC
Q 010554 461 NVKIGKDVVIVNK 473 (507)
Q Consensus 461 na~Ig~~~~i~~~ 473 (507)
++++|++-++...
T Consensus 408 ~VVv~~~~~l~~n 420 (673)
T KOG1461|consen 408 GVVVGRNFVLPKN 420 (673)
T ss_pred eeEeCCCcccccc
Confidence 9999999888765
No 82
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.26 E-value=4.4e-11 Score=108.43 Aligned_cols=110 Identities=25% Similarity=0.374 Sum_probs=85.0
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|.+||+|||+||||. ..=|||++++|+ |||+|+++.+.+ .+++|+++++.+.-...+|+.+. +
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~--------g--- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV--------G--- 63 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc--------C---
Confidence 579999999999998 245999999999 999999999998 88999999999998898888632 2
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-c-CCHHHHHHHHH
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHV 238 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~-~dl~~ll~~h~ 238 (507)
++++. ++++ |--.-|+.+...+. .++|++++|+.+ + ..+..+++.+.
T Consensus 64 v~vi~---tpG~-------GYv~Dl~~al~~l~-------~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 VKVIE---TPGE-------GYVEDLRFALESLG-------TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred ceEEE---cCCC-------ChHHHHHHHHHhcC-------CceEEEecccccCCHHHHHHHHHHHh
Confidence 56663 3322 55566776665553 599999999955 3 33566666554
No 83
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.23 E-value=5e-10 Score=106.74 Aligned_cols=112 Identities=18% Similarity=0.178 Sum_probs=79.8
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
..+.+||||||.|+||. .+|+|+|++|+ |||+|+++.+.. .+++|+|++++. +.. ..+. ..
T Consensus 6 ~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~-~~~~ivvv~~~~-~~~-~~~~----~~------ 66 (200)
T PRK02726 6 NNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAA-CADEVYIITPWP-ERY-QSLL----PP------ 66 (200)
T ss_pred CCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHh-hCCEEEEECCCH-HHH-Hhhc----cC------
Confidence 36889999999999996 47999999999 999999999975 478998888642 211 1111 10
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-c-CCHHHHHHHHH
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHV 238 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~-~dl~~ll~~h~ 238 (507)
.+.++...+ +..|..++++.++..++ .+.++|+.||+-+ . ..+..+++.+.
T Consensus 67 -~~~~i~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 67 -GCHWLREPP--------PSQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred -CCeEecCCC--------CCCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 134443221 23699999999987764 3789999999933 3 34567777654
No 84
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.22 E-value=1.4e-09 Score=105.43 Aligned_cols=215 Identities=16% Similarity=0.232 Sum_probs=139.4
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCcccCCCeE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V 175 (507)
|||+|+|.++||. .|.+.|++|+ |||.|+++.+.+++ +++|+|.+. .+.+.+... .| +. .+
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~-~~-------g~-~v 63 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAK-SY-------GA-SV 63 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHH-Hc-------CC-Ee
Confidence 7999999999994 4999999999 99999999999986 677777554 344544332 22 21 12
Q ss_pred EEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--cCCHHHHHHHHHHcCCceEEEEEEcCC
Q 010554 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGE 253 (507)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~--~~dl~~ll~~h~~~~a~~tl~~~~~~~ 253 (507)
.+..+.... .+..|+.++++.+...+++. ...+.|+++.+|.-+ ..++..+++.+++.+++..+.+.+...
T Consensus 64 ~~~r~~~l~-----~d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~ 136 (222)
T TIGR03584 64 PFLRPKELA-----DDFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAF 136 (222)
T ss_pred EEeChHHHc-----CCCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCC
Confidence 122111100 11258899999998777421 124679999999944 457899999998877888888777543
Q ss_pred CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCchh
Q 010554 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (507)
Q Consensus 254 ~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~~ 333 (507)
. + .+. ...+++|++..+..... ... .++. ...+..+.++|+++++.|.+ . . .+
T Consensus 137 ~-~-~~~-~~~~~~g~~~~~~~~~~-~~~-------------rQd~-~~~y~~nga~y~~~~~~~~~---~----~-~~- 189 (222)
T TIGR03584 137 P-I-QRA-FKLKENGGVEMFFPEHF-NTR-------------SQDL-EEAYHDAGQFYWGKSQAWLE---S----G-PI- 189 (222)
T ss_pred C-h-HHh-eEECCCCcEEecCCCcc-cCC-------------CCCC-chheeeCCeEEEEEHHHHHh---c----C-Cc-
Confidence 1 1 122 23446677665542110 000 0000 01256799999999998742 1 1 11
Q ss_pred hhhHHhhhhcCcEEEEEecc-EEEecCCHHHHHHHHHHh
Q 010554 334 SEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 334 ~dil~~li~~~~V~~~~~~g-yw~dIgt~~~y~~An~~l 371 (507)
-..++..|..+. ...||+|++||..|...+
T Consensus 190 --------~~~~~~~~~m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 190 --------FSPHSIPIVLPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred --------cCCCcEEEEeCccceeCCCCHHHHHHHHHHH
Confidence 135678888775 589999999999987643
No 85
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.19 E-value=1.1e-09 Score=104.15 Aligned_cols=54 Identities=17% Similarity=0.375 Sum_probs=48.3
Q ss_pred CCCCceEEEEEcCCCCCcccCCccCCCccceeecC-cchhhHHHHHHHHhcCCCEEEEEecc
Q 010554 90 VDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAG-CYRLIDIPMSNCINSGINKIFVLTQF 150 (507)
Q Consensus 90 ~~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g-~ypLId~~L~~l~~~Gi~~I~Vv~~~ 150 (507)
+.+.++.+||||||.++||. .+|+|+|++| + |||+|+++++... +++|+|++++
T Consensus 4 ~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~ 58 (196)
T PRK00560 4 PMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD 58 (196)
T ss_pred ccccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc
Confidence 44567899999999999995 5899999999 9 9999999999876 8999998875
No 86
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.18 E-value=8.3e-10 Score=114.85 Aligned_cols=121 Identities=16% Similarity=0.191 Sum_probs=84.3
Q ss_pred CCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCccc
Q 010554 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 91 ~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
+++++.+||||||.|+||. ..||+|+|++|+ |||+|+++.+.. .+++|+|+++...+.+.+++ ..
T Consensus 2 ~~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~-----~~---- 66 (366)
T PRK14489 2 QISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLF-----PG---- 66 (366)
T ss_pred CCCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhc-----cC----
Confidence 4567899999999999995 379999999999 999999999975 59999997766544332221 11
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eccCC-HHHHHHHHHHcCCc
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRDAD 243 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~~~d-l~~ll~~h~~~~a~ 243 (507)
+.++..... + ..|..++++.++..++ .+.++|+.||+ +...+ +..+++.+++.+++
T Consensus 67 ----~~~i~d~~~-g------~~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 67 ----LPVYPDILP-G------FQGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred ----CcEEecCCC-C------CCChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 122221111 0 1488888988876653 36799999998 33433 56777765555554
No 87
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.12 E-value=4.9e-10 Score=103.22 Aligned_cols=110 Identities=15% Similarity=0.286 Sum_probs=75.6
Q ss_pred CCCceec-ceeee-ceEEcCCcEEc-cceEe-eeeE---EeeccCceEe-eeecCCCcceeeCCCcEEeeeEeCCCCEEC
Q 010554 394 LPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 465 (507)
Q Consensus 394 ~~p~~i~-~~~I~-~siIg~gc~I~-~~~I~-~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig 465 (507)
.+.+.+. ++.|. +++||++|.|+ ++.|. +++| ..++.+++|. ++++++ +.|++++++.+|+|++++.|+
T Consensus 21 g~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~---~~I~~~~~i~~siIg~~~~I~ 97 (163)
T cd05636 21 GEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG---TKVPHLNYVGDSVLGENVNLG 97 (163)
T ss_pred cCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC---CEeccCCEEecCEECCCCEEC
Confidence 3334443 35454 57888888886 67776 4666 3678888884 888999 899999999999999999999
Q ss_pred CCcEEecC------------------------CCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 466 KDVVIVNK------------------------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 466 ~~~~i~~~------------------------~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+++.+.+. ..+++......+..|..| ++||+++.|++|+++
T Consensus 98 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g-~~ig~~~~i~agsvV 162 (163)
T cd05636 98 AGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPG-VKIGPGSWVYPGCVV 162 (163)
T ss_pred CCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCC-cEECCCCEECCCcEe
Confidence 99999763 233344444444444445 556666666666553
No 88
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.12 E-value=8.7e-10 Score=103.97 Aligned_cols=123 Identities=16% Similarity=0.185 Sum_probs=84.3
Q ss_pred EEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeE
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V 175 (507)
.+||||||.|+||. .+|.|++++|+ |||+|+++.+...++++|+|++++..+.+ +.+.+.... . ..+
T Consensus 2 ~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~-~~~~~~~~~---~---~~~ 68 (190)
T TIGR03202 2 VAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHL-SWLDPYLLA---D---ERI 68 (190)
T ss_pred eEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchh-hhhhHhhhc---C---CCe
Confidence 58999999999997 37999999999 99999999988889999999998765432 111111111 0 114
Q ss_pred EEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-cc-CCHHHHHHHHHHcCC
Q 010554 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YR-MDYMDFIQSHVDRDA 242 (507)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i-~~-~dl~~ll~~h~~~~a 242 (507)
+++.... |..|.+.+++.++..+.+ ...+.++++.||+- .. ..+..+++.......
T Consensus 69 ~~~~~~~--------~~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~ 126 (190)
T TIGR03202 69 MLVCCRD--------ACEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKRRPD 126 (190)
T ss_pred EEEECCC--------hhhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCC
Confidence 4432221 235888999998776531 13478999999993 33 345677766544333
No 89
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.11 E-value=4.2e-10 Score=105.54 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=82.2
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
+.+||||||.|+||. .+||+|+|++|+ |||+|+++++.. ++++|+|++++..+. +... .++
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~-------~~~--- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQA-------GFG--- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc-------cCC---
Confidence 468999999999997 369999999999 999999999976 599999988764321 1110 111
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eccCC-HHHHHHHHHHcCCc
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRDAD 243 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~~~d-l~~ll~~h~~~~a~ 243 (507)
+.++.... .+..|+.++|+.++..++ .+.++++.||+ +...+ +..+++.+.+.++.
T Consensus 62 ~~~i~~~~-------~~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 119 (186)
T TIGR02665 62 LPVVPDAL-------ADFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDAD 119 (186)
T ss_pred CcEEecCC-------CCCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCCc
Confidence 23333211 123699999999987663 47899999999 44444 56776665443443
No 90
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.11 E-value=3.9e-10 Score=91.35 Aligned_cols=75 Identities=17% Similarity=0.443 Sum_probs=64.2
Q ss_pred CCceec-ceeeeceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 395 PPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 395 ~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
+.+.|+ ++.|.+++|+++|.|+ +++|++|+| +++ +.||++++|.+|+|++++.|++++.+.+
T Consensus 4 ~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i-------------~~~---~~ig~~~~l~~svi~~~~~i~~~~~v~~ 67 (81)
T cd04652 4 ENTQVGEKTSIKRSVIGANCKIGKRVKITNCVI-------------MDN---VTIEDGCTLENCIIGNGAVIGEKCKLKD 67 (81)
T ss_pred CCCEECCCCEEeCcEECCCCEECCCCEEeCcEE-------------eCC---CEECCCCEEeccEEeCCCEECCCCEEcc
Confidence 445665 4777888999999997 678888776 888 8999999999999999999999999976
Q ss_pred CCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 473 KDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 473 ~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
++||++++|++++
T Consensus 68 --------------------~ii~~~~~i~~~~ 80 (81)
T cd04652 68 --------------------CLVGSGYRVEAGT 80 (81)
T ss_pred --------------------CEECCCcEeCCCC
Confidence 6899999999886
No 91
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.10 E-value=8.6e-09 Score=99.38 Aligned_cols=211 Identities=14% Similarity=0.184 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
+.|||||||.|+||. ...||.+++++|+ |+|.|+|+.+.+. .+++|+|++........+.+... .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----------~ 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----------K 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH----------T
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC----------C
Confidence 468999999999998 4689999999999 9999999999884 79999999987664433333221 1
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce---ec-cCCHHHHHHHHHHcCCceEEEEE
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH---LY-RMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~---i~-~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
.+.++.-. ..-.++++.++..+.+ ..+++++. |- +. ...+.++++..++ +....+...
T Consensus 67 ~v~iv~GG-----------~tR~~SV~ngL~~l~~-----~~d~VlIH-DaaRPfv~~~~i~~~i~~~~~-~~~aai~~~ 128 (221)
T PF01128_consen 67 KVKIVEGG-----------ATRQESVYNGLKALAE-----DCDIVLIH-DAARPFVSPELIDRVIEAARE-GHGAAIPAL 128 (221)
T ss_dssp TEEEEE-------------SSHHHHHHHHHHCHHC-----TSSEEEEE-ETTSTT--HHHHHHHHHHHHH-TCSEEEEEE
T ss_pred CEEEecCC-----------hhHHHHHHHHHHHHHc-----CCCEEEEE-ccccCCCCHHHHHHHHHHHHh-hcCcEEEEE
Confidence 25555311 1345788888777762 22444443 33 22 2235777777655 133455566
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEE-EEEeHHHHHHHHHhhCCC
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV-YVFKKDVLFKLLRWRYPT 328 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi-yif~~~iL~~ll~~~~~~ 328 (507)
++.+ .+...+++|.|....+. . .+..+.. ..|+.+.|.+..++....
T Consensus 129 p~~D------Tik~v~~~~~v~~tldR---~-----------------------~l~~~QTPQ~F~~~~l~~a~~~a~~~ 176 (221)
T PF01128_consen 129 PVTD------TIKRVDDDGFVTETLDR---S-----------------------KLWAVQTPQAFRFELLLEAYEKADEE 176 (221)
T ss_dssp E-SS------EEEEESTTSBEEEEETG---G-----------------------GEEEEEEEEEEEHHHHHHHHHTHHHH
T ss_pred eccc------cEEEEecCCcccccCCH---H-----------------------HeeeecCCCeecHHHHHHHHHHHHhc
Confidence 6554 35566767877765421 1 1222221 478888887776643221
Q ss_pred CCchhhh--hHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHh
Q 010554 329 SNDFGSE--IIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 329 ~~d~~~d--il~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~l 371 (507)
...+..| ++.. -..+|+...-+..-+-|.+|+|+..|...+
T Consensus 177 ~~~~tDdasl~~~--~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 177 GFEFTDDASLVEA--AGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp THHHSSHHHHHHH--TTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred CCCccCHHHHHHH--cCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 1222222 2211 246666665555677899999999998765
No 92
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.09 E-value=1.5e-08 Score=97.53 Aligned_cols=219 Identities=17% Similarity=0.170 Sum_probs=133.2
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHH-HHHHHhcccCCCccc
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASL-NRHIARTYFGNGTNF 170 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l-~~~l~~~~~~~~~~~ 170 (507)
..+.+||||||.|+||.. ..||.+++++|+ |||+|+++.+..+ .|++|+|+++...... .++.. + .
T Consensus 3 ~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~--~------~ 70 (230)
T COG1211 3 MMVSAVILAAGFGSRMGN---PVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK--L------S 70 (230)
T ss_pred ceEEEEEEcCccccccCC---CCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh--h------c
Confidence 457899999999999995 899999999999 9999999999886 6899999998744332 22221 1 0
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce----eccCCHHHHHHHHHHcCCceEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH----LYRMDYMDFIQSHVDRDADITI 246 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~----i~~~dl~~ll~~h~~~~a~~tl 246 (507)
....++++.-. ..-.++++..+..+.. ..++++++. |- +..-.+.++++...+.+ +.+
T Consensus 71 ~~~~v~~v~GG-----------~~R~~SV~~gL~~~~~----~~~~~VlvH-DaaRPf~~~~~i~~li~~~~~~~--aai 132 (230)
T COG1211 71 ADKRVEVVKGG-----------ATRQESVYNGLQALSK----YDSDWVLVH-DAARPFLTPKLIKRLIELADKYG--AAI 132 (230)
T ss_pred cCCeEEEecCC-----------ccHHHHHHHHHHHhhc----cCCCEEEEe-ccccCCCCHHHHHHHHHhhccCC--cEE
Confidence 11235555321 1356888888777752 123444443 33 22334677774433333 455
Q ss_pred EEEEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC
Q 010554 247 SCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (507)
Q Consensus 247 ~~~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~ 326 (507)
...|+.+ .+...+++|.|.+...... .-. ...| ..|+.+.|.+.++...
T Consensus 133 ~alpv~D------Tik~~~~~~~i~~t~~R~~---l~~--------~QTP--------------Q~F~~~~L~~a~~~a~ 181 (230)
T COG1211 133 LALPVTD------TLKRVDADGNIVETVDRSG---LWA--------AQTP--------------QAFRLELLKQALARAF 181 (230)
T ss_pred EEeeccC------cEEEecCCCCeeeccChhh---hhh--------hhCC--------------ccccHHHHHHHHHHHH
Confidence 6666654 3444555666665532211 100 1112 3577777777766543
Q ss_pred CCCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhh
Q 010554 327 PTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 327 ~~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll 372 (507)
....++..|.--......++....-+-+-+-|.+|+|+.-|+..+-
T Consensus 182 ~~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~ 227 (230)
T COG1211 182 AEGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILR 227 (230)
T ss_pred hcCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhc
Confidence 3333333332111112567776666667899999999999987654
No 93
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=99.08 E-value=5.2e-09 Score=106.60 Aligned_cols=214 Identities=19% Similarity=0.289 Sum_probs=130.4
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeec---CcchhhHHHHHHHHhcC------------CCEEEEEec-cCchHHH
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINSG------------INKIFVLTQ-FNSASLN 156 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~---g~ypLId~~L~~l~~~G------------i~~I~Vv~~-~~~~~l~ 156 (507)
.++.+||||||.|||| +...||+|+||+ |+ |++++.++.+...+ + .++|+|+ +..+.+.
T Consensus 14 ~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~i-p~~imtS~~t~~~t~ 88 (323)
T cd04193 14 GKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPI-PWYIMTSEATHEETR 88 (323)
T ss_pred CCEEEEEECCCccccc---CCCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCc-eEEEEcChhHhHHHH
Confidence 4789999999999999 678999999998 68 99999999998742 4 3567777 7788898
Q ss_pred HHHHhc-ccCCCcc----cCCCeEEEecCccCC----CCCCCCcccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCcee
Q 010554 157 RHIART-YFGNGTN----FGDGFVEVLAATQTP----GESGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHL 225 (507)
Q Consensus 157 ~~l~~~-~~~~~~~----~~~~~V~vl~~~q~~----~~~~~~~~~Gta~AL~~~~~--~l~~~~~~~~~~~lVl~gD~i 225 (507)
+++.+. ||+.... |.+..+-.+..+... ...-.-.|.|.||-...... .+++....+.+.+.+.+-|.+
T Consensus 89 ~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~ 168 (323)
T cd04193 89 KFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNI 168 (323)
T ss_pred HHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcc
Confidence 888753 3443110 111111111100000 00001235688887665422 344444567899999999995
Q ss_pred -ccCCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEE-ECCCCcEEEEEeCCCccccccccccccccCCCccccccCC
Q 010554 226 -YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCP 303 (507)
Q Consensus 226 -~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (507)
...---.++-.|..+++++.+-+.+...+. +.-|.+. .|..-+|+++.|-|....... .-+.. | ..
T Consensus 169 L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-ekvG~l~~~~g~~~vvEysel~~~~~~~~-~~~g~-l---------~f 236 (323)
T cd04193 169 LVKVADPVFIGFCISKGADVGAKVVRKRYPT-EKVGVVVLVDGKPQVVEYSEISDELAEKR-DADGE-L---------QY 236 (323)
T ss_pred cccccCHHHhHHHHHcCCceEEEEEECCCCC-CceeEEEEECCeEEEEEeecCCHHHHhcc-CcCCc-E---------ec
Confidence 433224678888899999888766554321 2345544 343335667776654332110 00000 0 11
Q ss_pred ceeeeEEEEEeHHHHHHHHH
Q 010554 304 YVASMGVYVFKKDVLFKLLR 323 (507)
Q Consensus 304 ~l~~~Giyif~~~iL~~ll~ 323 (507)
+..+..+.+|+.+.|.++++
T Consensus 237 ~~~ni~~~~fsl~fl~~~~~ 256 (323)
T cd04193 237 NAGNIANHFFSLDFLEKAAE 256 (323)
T ss_pred ccchHhhheeCHHHHHHHHh
Confidence 34455677888888887765
No 94
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.06 E-value=8.8e-09 Score=100.33 Aligned_cols=115 Identities=23% Similarity=0.260 Sum_probs=78.3
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCc--hHHHHHHHhcccCCCcccCCC
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNS--ASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~--~~l~~~l~~~~~~~~~~~~~~ 173 (507)
|||||+|.++||. +|.|+|++|+ |||+|+++.+..++ +++|+|+++... +.+.+++.. .+
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~--------~~-- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK--------LG-- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH--------cC--
Confidence 7999999999994 4999999999 99999999999987 899999998765 455544431 11
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--cCCHHHHHHHHHHcCCceE
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADIT 245 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~--~~dl~~ll~~h~~~~a~~t 245 (507)
++++.... + + .+......++. ...+.++++.||+-+ ...+.++++.++..+.+++
T Consensus 65 -v~~v~~~~--------~--~---~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 -VKVFRGSE--------E--D---VLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred -CeEEECCc--------h--h---HHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 33432111 0 1 12111112221 124679999999933 4557899988877666654
No 95
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.04 E-value=1.1e-08 Score=106.67 Aligned_cols=114 Identities=9% Similarity=0.146 Sum_probs=76.2
Q ss_pred CCCCCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCC
Q 010554 88 RRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNG 167 (507)
Q Consensus 88 ~~~~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~ 167 (507)
.++++..+.+||||||.|+||. .+|+|+|++|+ |||+|+++.+.. .+++|+|+++...... +. .
T Consensus 168 ~~~~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~-~~~~vvV~~~~~~~~~---~~-~----- 231 (369)
T PRK14490 168 GRAEEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRP-HCQEVFISCRAEQAEQ---YR-S----- 231 (369)
T ss_pred cccccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHh-hCCEEEEEeCCchhhH---Hh-h-----
Confidence 3444567889999999999997 48999999999 999999999976 4788888776542211 11 0
Q ss_pred cccCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-cCC-HHHHHHH
Q 010554 168 TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQS 236 (507)
Q Consensus 168 ~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~~d-l~~ll~~ 236 (507)
++ +.++.... + ..|...++..+..... .+.++++.||+-+ +.+ +..+++.
T Consensus 232 --~~---v~~i~d~~-~-------~~Gpl~gi~~al~~~~------~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 232 --FG---IPLITDSY-L-------DIGPLGGLLSAQRHHP------DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred --cC---CcEEeCCC-C-------CCCcHHHHHHHHHhCC------CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 11 33443221 1 1466677776654432 3679999999933 433 4555543
No 96
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=99.00 E-value=3.5e-08 Score=98.08 Aligned_cols=214 Identities=14% Similarity=0.153 Sum_probs=129.6
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeec---CcchhhHHHHHHHHh--------cCCCEEEEEeccCchHHHHHHHhcc
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCIN--------SGINKIFVLTQFNSASLNRHIARTY 163 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~---g~ypLId~~L~~l~~--------~Gi~~I~Vv~~~~~~~l~~~l~~~~ 163 (507)
+.+||||||.||||. ...||+|+||+ |+ |+|+|.++.+.. .+|..+++...+..+.+.+++.+..
T Consensus 1 va~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 1 VAVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred CEEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 368999999999995 78999999999 99 999999999976 3477777777788888999997532
Q ss_pred cCCCc--ccCCCeEEEecCc-cC-CCCCC--CCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceec-cC-CHHHH
Q 010554 164 FGNGT--NFGDGFVEVLAAT-QT-PGESG--KNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLY-RM-DYMDF 233 (507)
Q Consensus 164 ~~~~~--~~~~~~V~vl~~~-q~-~~~~~--~~~~~Gta~AL~~~~--~~l~~~~~~~~~~~lVl~gD~i~-~~-dl~~l 233 (507)
+.... .|.+..+-.+... .. ..+.. ...+-|.||.+.... ..+++....+.+.+.|.+.|.+. .. |. .+
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP-~~ 155 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADP-LF 155 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCH-HH
Confidence 11110 0111111111110 00 00001 123568888776442 23444344677889999999954 45 54 46
Q ss_pred HHHHHHcCCceEEEEEEcCCCCCccceEEEECCCCc--EEEEEeCCCccccccc---c-ccccccCCCccccccCCceee
Q 010554 234 IQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKAM---Q-VDTSLLGFSPQEARKCPYVAS 307 (507)
Q Consensus 234 l~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id~~gr--V~~~~eKp~~~~~~~~---~-~~~~~~~~~~~~~~~~~~l~~ 307 (507)
+-.+...++++.+-+.+.+..+ +.-|++...++|+ ++++.|-|........ . -+.+ .......+
T Consensus 156 lG~~~~~~~~~~~kvv~K~~~d-~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~~~---------~~~~~~~n 225 (266)
T cd04180 156 IGIAIQNRKAINQKVVPKTRNE-ESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDID---------DAPFFLFN 225 (266)
T ss_pred HHHHHHcCCCEEEEEEECCCCC-CeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCCCC---------ceeeccce
Confidence 7777888888777666554322 2346555432354 6666665532211000 0 0011 11235789
Q ss_pred eEEEEEeHHHHHHHHH
Q 010554 308 MGVYVFKKDVLFKLLR 323 (507)
Q Consensus 308 ~Giyif~~~iL~~ll~ 323 (507)
+...+|+-+.+.+.++
T Consensus 226 ~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 226 TNNLINFLVEFKDRVD 241 (266)
T ss_pred EEEEEEEHHHHHHHHH
Confidence 9999999999987765
No 97
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.96 E-value=4.4e-09 Score=84.52 Aligned_cols=74 Identities=32% Similarity=0.508 Sum_probs=60.1
Q ss_pred CCceec-ceeeeceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 395 PPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 395 ~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
+.+.++ ++.|.+++||++|+|+ ++.+++|+| +++ +.|+++++|.+|+|++++.|++++.+.+
T Consensus 4 ~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi-------------~~~---~~i~~~~~i~~svv~~~~~i~~~~~i~~ 67 (79)
T cd03356 4 ESTVIGENAIIKNSVIGDNVRIGDGVTITNSIL-------------MDN---VTIGANSVIVDSIIGDNAVIGENVRVVN 67 (79)
T ss_pred CCcEECCCCEEeCCEECCCCEECCCCEEeCCEE-------------eCC---CEECCCCEEECCEECCCCEECCCCEEcC
Confidence 445665 4777788889999997 678888776 788 8899999999999999999999998876
Q ss_pred CCCCccCCCCCCCeEEcCCeEEEcCCCEeCC
Q 010554 473 KDDVQEADRPELGFYIRSGITIIMEKATIED 503 (507)
Q Consensus 473 ~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~ 503 (507)
. ++|+++++|++
T Consensus 68 ~-------------------~~ig~~~~i~~ 79 (79)
T cd03356 68 L-------------------CIIGDDVVVED 79 (79)
T ss_pred C-------------------eEECCCeEECc
Confidence 3 56788888764
No 98
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=98.94 E-value=5.3e-09 Score=98.99 Aligned_cols=114 Identities=21% Similarity=0.271 Sum_probs=60.4
Q ss_pred cCCCceec-ceeeeceEEcCCcEEc-cceEeeeeE---EeeccCceEe--eeecCCCc--------------ceeeCCCc
Q 010554 393 FLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA--SLLAEGKV--------------PIGVGRNT 451 (507)
Q Consensus 393 ~~~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~--s~l~~g~~--------------~~~Ig~~~ 451 (507)
+.+.+.|. ++.|.++.||++|.|+ ++.+.++++ ..++.++.|. +.++++.. .+.|++.+
T Consensus 36 Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~ 115 (193)
T cd03353 36 IGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLS 115 (193)
T ss_pred ECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCCCEecccc
Confidence 33344443 3666667777777776 566777666 2344444442 34444300 03334444
Q ss_pred EEeeeEeCCCCEECCCcEEecCC-------CCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 452 KIRNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 452 ~I~nsIIg~na~Ig~~~~i~~~~-------~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
.|.+|+||+++.||+++.+.+.+ .++|......+..+..| +.||+++.|++|+++
T Consensus 116 ~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~-~~Ig~~~~i~~gs~V 177 (193)
T cd03353 116 YLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAP-VTIGDGATIAAGSTI 177 (193)
T ss_pred eecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCC-cEECCCcEECCCCEE
Confidence 44456666666666666665432 23333333333334445 567788888877754
No 99
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.93 E-value=4.7e-09 Score=100.27 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=53.0
Q ss_pred CCCceec-ceeeeceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEe
Q 010554 394 LPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 394 ~~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~ 471 (507)
.+++.|+ ++.|.++.||+||.|+ +|.|.+|+| +++ +.|++++.|.+++||++|.|++++.|.
T Consensus 6 ~~~~~I~~~a~i~~~~IG~~~~Ig~~a~I~~s~I-------------G~~---s~I~~~~~i~~~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 6 SPEPTLHPTAELTESKLGRYTEIGERTRLREVAL-------------GDY---SYVMRDCDIIYTTIGKFCSIAAMVRIN 69 (204)
T ss_pred CCCCeECCCcEEeccEeCCCcEECCCcEEeCCEE-------------CCC---CEECCCcEEeeeEECCCCEECCCCEEC
Confidence 3455666 4888889999999998 688888777 777 889999999999999999999999887
Q ss_pred cC
Q 010554 472 NK 473 (507)
Q Consensus 472 ~~ 473 (507)
++
T Consensus 70 ~~ 71 (204)
T TIGR03308 70 AT 71 (204)
T ss_pred CC
Confidence 54
No 100
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.91 E-value=1.1e-09 Score=117.21 Aligned_cols=121 Identities=13% Similarity=0.210 Sum_probs=73.6
Q ss_pred CCCCCcccCCCcCCCceec-ceeeeceEEcCCcEEccceEeeeeE---EeeccCceEe--eeecCCCcceeeCCCcEEee
Q 010554 382 DPKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLRECTVEHSIV---DYYQTESEIA--SLLAEGKVPIGVGRNTKIRN 455 (507)
Q Consensus 382 ~~~~~i~~~~~~~~p~~i~-~~~I~~siIg~gc~I~~~~I~~Sii---~~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~n 455 (507)
++...+.....+.+++.|+ ++.|.+|+|++||.|+++.+.+|+| ..++.++.|. ++|+++ |.||+++.|.+
T Consensus 272 ~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~---~~Ig~~~~i~~ 348 (450)
T PRK14360 272 EPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSN---CRIGNFVEIKK 348 (450)
T ss_pred CCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCc---eEECCCEEEec
Confidence 4444555555566667775 5778888888888887677777777 3566777663 667766 66776666655
Q ss_pred eE-----------------eCCCCEECCCcEEec-------CCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 456 CI-----------------IDKNVKIGKDVVIVN-------KDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 456 sI-----------------Ig~na~Ig~~~~i~~-------~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
++ |+++|.||.++.+.+ ...+++......+..+.+| +.||+++.|++|++
T Consensus 349 ~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~-~~ig~~~~v~~~~~ 422 (450)
T PRK14360 349 SQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAP-ITLGEDVTVAAGST 422 (450)
T ss_pred cccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCC-cEECCCCEECCCCE
Confidence 54 445555555555443 2233344444444444445 55666666666654
No 101
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.89 E-value=1.6e-07 Score=88.54 Aligned_cols=234 Identities=15% Similarity=0.215 Sum_probs=154.5
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
+..+||.|-=..|||.- |||--|+|+ |||.|+.++..++|.++++|.|.+ +++.+++. .||.
T Consensus 3 ~~~viIPAR~~STRLpg------KPLadI~Gk-pmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~--------~~G~- 64 (247)
T COG1212 3 KFVVIIPARLASTRLPG------KPLADIGGK-PMIVRVAERALKSGADRVVVATDD--ERIAEAVQ--------AFGG- 64 (247)
T ss_pred ceEEEEecchhcccCCC------CchhhhCCc-hHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHH--------HhCC-
Confidence 46788999888999964 999999999 999999999999999999999864 56777774 2331
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--cCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~--~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
.+ ++....+ ..||-. +..+...+. ...++-++=+-||.=+ ...+..+++...+.+++|.-++.+.
T Consensus 65 ~a-vmT~~~h--------~SGTdR-~~Ev~~~l~---~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i 131 (247)
T COG1212 65 EA-VMTSKDH--------QSGTDR-LAEVVEKLG---LPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKI 131 (247)
T ss_pred EE-EecCCCC--------CCccHH-HHHHHHhcC---CCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeec
Confidence 11 2222221 136644 333433332 1223455666899833 3456778887777778876666665
Q ss_pred CCCCC---ccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC
Q 010554 252 GESRA---SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (507)
Q Consensus 252 ~~~~~---~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~ 328 (507)
.++.. .+--.+..|.+|+-+.|...|-....+. .- ..+.+--.|+|.|++++|.++..+. |+
T Consensus 132 ~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~~-------------~~p~l~HIGIYayr~~~L~~f~~~~-ps 196 (247)
T COG1212 132 TDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-FG-------------GTPFLRHIGIYAYRAGFLERFVALK-PS 196 (247)
T ss_pred CCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-cC-------------CcchhheeehHHhHHHHHHHHHhcC-Cc
Confidence 54221 2334456788899999987664332110 00 0246778999999999999987764 22
Q ss_pred CCchh--hhhHHhhhhcCcEEEEEeccEE-EecCCHHHHHHHHHHhhc
Q 010554 329 SNDFG--SEIIPAAIMEHDVQAYIFRDYW-EDIGTIKSFYEANMALTK 373 (507)
Q Consensus 329 ~~d~~--~dil~~li~~~~V~~~~~~gyw-~dIgt~~~y~~An~~ll~ 373 (507)
...-. -|-|..+-...+|.+...+..- ..|+|++||.++...+.+
T Consensus 197 ~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 197 PLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred hhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 11101 1234444456899998888654 899999999999887653
No 102
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.86 E-value=1.6e-08 Score=81.67 Aligned_cols=74 Identities=19% Similarity=0.364 Sum_probs=59.8
Q ss_pred CCceec-ceeee-ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEe
Q 010554 395 PPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 395 ~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~ 471 (507)
|+++++ ++.|. +++|+++|.|+ +|.|.+|++ +++ +.|+++++|.+|++++++.|++++.+.
T Consensus 4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii-------------~~~---~~i~~~~~i~~sii~~~~~v~~~~~~~ 67 (80)
T cd05824 4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVI-------------LSN---STVRDHSWVKSSIVGWNSTVGRWTRLE 67 (80)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEEeeeEE-------------cCC---CEECCCCEEeCCEEeCCCEECCCcEEe
Confidence 456665 46673 78899999997 688888776 888 899999999999999999999999886
Q ss_pred cCCCCccCCCCCCCeEEcCCeEEEcCCCEeCC
Q 010554 472 NKDDVQEADRPELGFYIRSGITIIMEKATIED 503 (507)
Q Consensus 472 ~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~ 503 (507)
+. ++||++++|++
T Consensus 68 ~~-------------------~~ig~~~~i~~ 80 (80)
T cd05824 68 NV-------------------TVLGDDVTIKD 80 (80)
T ss_pred cC-------------------EEECCceEECC
Confidence 53 56788887763
No 103
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=98.84 E-value=9.8e-08 Score=98.17 Aligned_cols=109 Identities=8% Similarity=0.048 Sum_probs=76.2
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
++.+||||||+|+||. .+|.|+|+.|+ ||++|+++.+.. .+++|+|+++... . . .+ . +.
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~-~~~~ViVv~~~~~--~-~----~~-~----~~-- 218 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAK-YCEQVFLSARPSQ--W-Q----GT-P----LE-- 218 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHh-hCCEEEEEeCchH--h-h----hc-c----cc--
Confidence 6789999999999996 59999999999 999999988876 4889988886421 1 0 00 0 00
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-ccCC-HHHHHHHH
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMD-YMDFIQSH 237 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i-~~~d-l~~ll~~h 237 (507)
.+.++.... +..|...+|+.++..+. .+.++++.||+- ...+ +..+++.+
T Consensus 219 ~v~~I~D~~--------~~~GPlagI~aaL~~~~------~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 219 NLPTLPDRG--------ESVGPISGILTALQSYP------GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred CCeEEeCCC--------CCCChHHHHHHHHHhCC------CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 123332221 12599999999876543 357899999994 3434 56666654
No 104
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.82 E-value=2e-08 Score=80.42 Aligned_cols=62 Identities=21% Similarity=0.409 Sum_probs=43.4
Q ss_pred CCceec-ceeeeceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 395 PPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 395 ~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
+.+.++ ++.|.+++|+++|.|+ ++.|.+|+| +++ +.|+++++|.+|+|+++++|++++.|..
T Consensus 4 ~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i-------------~~~---~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 67 (79)
T cd05787 4 RGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYI-------------WDD---VTIEDGCTIHHSIVADGAVIGKGCTIPP 67 (79)
T ss_pred CCCEECCCCEEeccEECCCCEECCCCEEeCcEE-------------eCC---CEECCCCEEeCcEEcCCCEECCCCEECC
Confidence 344554 3666667777777776 466666555 677 7788888888888888888888877764
No 105
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.81 E-value=4.2e-07 Score=96.80 Aligned_cols=214 Identities=19% Similarity=0.231 Sum_probs=127.6
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeec---CcchhhHHHHHHHHhc--------------CCCEEEEEe-ccCchH
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS--------------GINKIFVLT-QFNSAS 154 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~---g~ypLId~~L~~l~~~--------------Gi~~I~Vv~-~~~~~~ 154 (507)
.++.+||||||.||||. ...||+|+||+ |+ ||+++.++.+... .+. ++|++ .+..+.
T Consensus 105 gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip-~~IMTS~~t~~~ 179 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIY-ILVLTSSFNHDQ 179 (482)
T ss_pred CCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCC-EEEEeCcchHHH
Confidence 46999999999999996 68999999994 78 9999999999874 244 45554 577888
Q ss_pred HHHHHHhc-ccCCCcc----cCCCeEEEecCc-cC----CCCCCCCcccChHHHHHHHHH--HHHhhhcCCCCeEEEEcC
Q 010554 155 LNRHIART-YFGNGTN----FGDGFVEVLAAT-QT----PGESGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCG 222 (507)
Q Consensus 155 l~~~l~~~-~~~~~~~----~~~~~V~vl~~~-q~----~~~~~~~~~~Gta~AL~~~~~--~l~~~~~~~~~~~lVl~g 222 (507)
+.+++.+. ||+.... |.++.+-.+... .. ....-...|.|.|+-.+.... .+++....+.+++.+.+.
T Consensus 180 t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~v 259 (482)
T PTZ00339 180 TRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISI 259 (482)
T ss_pred HHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEec
Confidence 88888643 2432110 111111111100 00 000000224688876665422 344444567899999999
Q ss_pred ceec-cCCHHHHHHHHHHcCC-ceEEEEEEcCCCCCccceEEEE-CCCCcEEEEEeCCCccccccccccccccCCCcccc
Q 010554 223 DHLY-RMDYMDFIQSHVDRDA-DITISCAAVGESRASDYGLVKI-DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (507)
Q Consensus 223 D~i~-~~dl~~ll~~h~~~~a-~~tl~~~~~~~~~~~~~g~v~i-d~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~ 299 (507)
|.+. ..---.++-.+...++ ++.-.+.+... .+.-|++.. |..-.|+.+.|-+...... ..-++..+
T Consensus 260 DN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~~-~~~~~g~l------- 329 (482)
T PTZ00339 260 DNILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILNN-DELLTGEL------- 329 (482)
T ss_pred CcccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhhc-ccccCCee-------
Confidence 9974 3333467777888777 65544333322 234566654 3222678888765433210 00000111
Q ss_pred ccCCceeeeEEEEEeHHHHHHHHH
Q 010554 300 RKCPYVASMGVYVFKKDVLFKLLR 323 (507)
Q Consensus 300 ~~~~~l~~~Giyif~~~iL~~ll~ 323 (507)
.....++..++|+.++|.++++
T Consensus 330 --~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 330 --AFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred --cccccceEEEEEEHHHHHHHhh
Confidence 1246788999999999987654
No 106
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=98.80 E-value=8.5e-08 Score=98.03 Aligned_cols=21 Identities=5% Similarity=-0.235 Sum_probs=13.1
Q ss_pred EEEecCCHHHHHHHHHHhhcc
Q 010554 354 YWEDIGTIKSFYEANMALTKE 374 (507)
Q Consensus 354 yw~dIgt~~~y~~An~~ll~~ 374 (507)
.+.-+++|...+..-..++.+
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~ 86 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDP 86 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcc
Confidence 356678898666555555543
No 107
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.79 E-value=2.7e-08 Score=84.68 Aligned_cols=56 Identities=27% Similarity=0.414 Sum_probs=43.8
Q ss_pred EEcCCcEEccceEeeeeE---EeeccCceE-eeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 408 IISHGCFLRECTVEHSIV---DYYQTESEI-ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 408 iIg~gc~I~~~~I~~Sii---~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
.|+++|.| .+|+| ..++ ++.+ +|+++++ +.||++++|.+|+|+++++||+++.|.+
T Consensus 3 ~i~~~~~i-----~~s~Ig~~~~I~-~~~I~~svi~~~---~~Ig~~~~I~~siI~~~~~Ig~~~~i~~ 62 (104)
T cd04651 3 YIGRRGEV-----KNSLVSEGCIIS-GGTVENSVLFRG---VRVGSGSVVEDSVIMPNVGIGRNAVIRR 62 (104)
T ss_pred eecCCCEE-----EeEEECCCCEEc-CeEEEeCEEeCC---CEECCCCEEEEeEEcCCCEECCCCEEEe
Confidence 44555554 44555 2467 7777 4999999 8999999999999999999999999976
No 108
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=98.79 E-value=3.4e-08 Score=90.24 Aligned_cols=41 Identities=22% Similarity=0.490 Sum_probs=32.0
Q ss_pred eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccC
Q 010554 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
++++++ +.|++++.|.+|+||+++.||.++.|.+...+++.
T Consensus 62 ~~Ig~~---~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~g~~Ig~~ 102 (155)
T cd04745 62 TVLEEN---GHIGHGAILHGCTIGRNALVGMNAVVMDGAVIGEE 102 (155)
T ss_pred eEEcCC---CEECCCcEEECCEECCCCEECCCCEEeCCCEECCC
Confidence 556887 78888888889999999999988888775444433
No 109
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=98.78 E-value=3e-08 Score=93.70 Aligned_cols=113 Identities=17% Similarity=0.241 Sum_probs=78.1
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
+.+|.+||||||+++|| .+|+|++++|+ |||+|+++.|....- .++|....+.+. +. .++
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~---------~~g 61 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YA---------EFG 61 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hh---------ccC
Confidence 46789999999999999 67999999999 999999999988754 555555544321 11 122
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-cCC-HHHHHHHHHHcC
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQSHVDRD 241 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~~d-l~~ll~~h~~~~ 241 (507)
++++..... ++ |.-.+++.++..+. .+.++++.||+=+ ..+ +..+.+.....+
T Consensus 62 ---~~vv~D~~~-------~~-GPL~Gi~~al~~~~------~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 62 ---LPVVPDELP-------GF-GPLAGILAALRHFG------TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred ---CceeecCCC-------CC-CCHHHHHHHHHhCC------CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 345543221 12 88888888876663 5799999999933 444 455555544433
No 110
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.78 E-value=3.7e-06 Score=89.00 Aligned_cols=213 Identities=15% Similarity=0.222 Sum_probs=128.7
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc----CCC-EEEEEeccC-chHHHHHHHhcc--
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS----GIN-KIFVLTQFN-SASLNRHIARTY-- 163 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~----Gi~-~I~Vv~~~~-~~~l~~~l~~~~-- 163 (507)
..++.+|.||||.||||. ..-||.++|+.+...++|..++.+... |.+ -.+|.++++ .+...+++.+ |
T Consensus 77 L~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k-~~~ 152 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEK-YTN 152 (469)
T ss_pred HhcEEEEEecCCcccccC---CCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHH-cCC
Confidence 468899999999999998 578999999954338999988887543 443 346677755 4557777753 3
Q ss_pred cCCCc-ccCCCeEE-EecCccC----CC-CCCCCc-ccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceecc-CCHHH
Q 010554 164 FGNGT-NFGDGFVE-VLAATQT----PG-ESGKNW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYR-MDYMD 232 (507)
Q Consensus 164 ~~~~~-~~~~~~V~-vl~~~q~----~~-~~~~~~-~~Gta~AL~~~~--~~l~~~~~~~~~~~lVl~gD~i~~-~dl~~ 232 (507)
+.... -|.+..+- +...... .+ .+...| |.|.||...... ..+++....+.+++.|.+.|.+.. .| ..
T Consensus 153 ~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vD-p~ 231 (469)
T PLN02474 153 SNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVD-LK 231 (469)
T ss_pred CccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccC-HH
Confidence 21110 11111111 1110000 00 001113 467776655432 123444446789999999999764 44 46
Q ss_pred HHHHHHHcCCceEEEEEEcCCCCCccceEEE-ECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEE
Q 010554 233 FIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVY 311 (507)
Q Consensus 233 ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy 311 (507)
++.+|..+++++++=+.+...++ ..-|.+. .|..=+|+++.+-|+..... .+ . .....+.+++.+
T Consensus 232 ~lg~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~~dgk~~lvEysqvp~e~~~~---f~-~---------~~kf~~fNtnn~ 297 (469)
T PLN02474 232 ILNHLIQNKNEYCMEVTPKTLAD-VKGGTLISYEGKVQLLEIAQVPDEHVNE---FK-S---------IEKFKIFNTNNL 297 (469)
T ss_pred HHHHHHhcCCceEEEEeecCCCC-CCccEEEEECCEEEEEEEecCCHHHHHh---hc-c---------cccceeeeeeeE
Confidence 88899999999888776544322 2235444 33223577888777543210 00 0 012357899999
Q ss_pred EEeHHHHHHHHH
Q 010554 312 VFKKDVLFKLLR 323 (507)
Q Consensus 312 if~~~iL~~ll~ 323 (507)
.|+-+.|.++++
T Consensus 298 w~~L~~l~~~~~ 309 (469)
T PLN02474 298 WVNLKAIKRLVE 309 (469)
T ss_pred EEEHHHHHHHhh
Confidence 999999988765
No 111
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=98.77 E-value=3.5e-08 Score=93.35 Aligned_cols=77 Identities=22% Similarity=0.429 Sum_probs=58.3
Q ss_pred cCCCceec-ceeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEE
Q 010554 393 FLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKI 464 (507)
Q Consensus 393 ~~~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~I 464 (507)
+.+.+.+. .+.|. ++.||++|.|+ ++.|.+++| ..++.++.+. ++++++ +.||++++|+ +++|+++++|
T Consensus 18 ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~---~~Ig~~~~I~~~~~Ig~~~~I 94 (193)
T cd03353 18 IGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNG---ATVGPFAHLRPGTVLGEGVHI 94 (193)
T ss_pred ECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCC---CEECCccEEcCccEECCCCEE
Confidence 33445554 35565 68899999997 688888877 3667777774 888888 8899999987 7888888888
Q ss_pred CCCcEEec
Q 010554 465 GKDVVIVN 472 (507)
Q Consensus 465 g~~~~i~~ 472 (507)
++++.+.+
T Consensus 95 g~~~~i~~ 102 (193)
T cd03353 95 GNFVEIKK 102 (193)
T ss_pred CCcEEEec
Confidence 88777764
No 112
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=98.76 E-value=1.1e-07 Score=95.01 Aligned_cols=62 Identities=26% Similarity=0.201 Sum_probs=32.1
Q ss_pred eeeCCCcEEee-eEeCCCCEECCCcEEecCCCCccCCCCCCCeEE-cCCeEEEcCCCEeCCCccC
Q 010554 445 IGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI-RSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 445 ~~Ig~~~~I~n-sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i-~~g~~vig~~~~i~~gt~i 507 (507)
+.|..|+.|.. +.||+||.|+.|++|+. ++++.+.....=+.+ .-|.++|++++.||.+|.|
T Consensus 154 ~~i~~~v~I~~~~~IG~~v~I~~GavIG~-dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~I 217 (338)
T COG1044 154 TVIHPNVTIYHNVVIGNNVIIHSGAVIGA-DGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTI 217 (338)
T ss_pred cEEcCCCEEecCcEECCceEECCCCEEcc-CccccccccCCceEcceeceEEECCceEEccccee
Confidence 44444555543 66666666666666653 455555322221222 2355666666666666544
No 113
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.74 E-value=2.5e-08 Score=101.95 Aligned_cols=99 Identities=20% Similarity=0.362 Sum_probs=75.7
Q ss_pred eeee-ceEEcCCcEEc-cceEeeeeEE---eeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEecCC
Q 010554 402 CRIK-DAIISHGCFLR-ECTVEHSIVD---YYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 474 (507)
Q Consensus 402 ~~I~-~siIg~gc~I~-~~~I~~Sii~---~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~ 474 (507)
+.+. ++.||++|+|+ +|.|++|.|+ .|...+.+. |.+++| +.||..++|| +|.++++++||..|.++++
T Consensus 281 v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~---~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a- 356 (460)
T COG1207 281 VILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG---ATVGPFARLRPGAVLGADVHIGNFVEVKKA- 356 (460)
T ss_pred cEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC---cccCCccccCCcCcccCCCeEeeeEEEecc-
Confidence 4443 67899999998 7899998882 445555563 777888 7888888888 7999999999999999885
Q ss_pred CCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 475 DVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 475 ~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
.+++......=.|+ |-+.||++++||+||+
T Consensus 357 ~ig~gsKa~HLtYl--GDA~iG~~~NiGAGtI 386 (460)
T COG1207 357 TIGKGSKAGHLTYL--GDAEIGENVNIGAGTI 386 (460)
T ss_pred cccCCccccceeee--ccceecCCceeccceE
Confidence 56666665555666 4467888888888886
No 114
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=98.73 E-value=5.1e-08 Score=92.14 Aligned_cols=90 Identities=16% Similarity=0.383 Sum_probs=54.7
Q ss_pred ceEEcCCcEEc-cceEeee----eE---EeeccCceE------eeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEe
Q 010554 406 DAIISHGCFLR-ECTVEHS----IV---DYYQTESEI------ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~S----ii---~~vg~~~~i------~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~ 471 (507)
++.||++|.|. +|.|..+ +| ..+|.++.| .++|+++ +.||+++.|.+|+|++++.||.++.+.
T Consensus 26 ~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~---~~Ig~~a~I~~siIg~~~~IG~ga~I~ 102 (192)
T TIGR02287 26 DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN---GHVGHGAILHGCIVGRNALVGMNAVVM 102 (192)
T ss_pred eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC---CEECCCCEEcCCEECCCCEECCCcccC
Confidence 45666666665 4555421 22 234555544 2677888 788888888899999999998888887
Q ss_pred cCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 472 NKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 472 ~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
+...+++. ..+..| ++|.++..|++++
T Consensus 103 ~g~~IG~~------s~Vgag-s~V~~~~~ip~~~ 129 (192)
T TIGR02287 103 DGAVIGEN------SIVAAS-AFVKAGAEMPAQY 129 (192)
T ss_pred CCeEECCC------CEEcCC-CEECCCCEECCCe
Confidence 65433333 333334 3444444454443
No 115
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=98.72 E-value=8.5e-08 Score=94.86 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=37.0
Q ss_pred eeeCCCcEE-eeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 445 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 445 ~~Ig~~~~I-~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+.|+++++| .+|+||+++.|+.++.+.+...+++......+..|.++ +.||++++|+.++++
T Consensus 109 ~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V 171 (254)
T cd03351 109 NLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF-CRIGRHAMVGGGSGV 171 (254)
T ss_pred CEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC-cEECCCCEECcCCEE
Confidence 344444444 45666666666666666555556666555556666666 666777777777653
No 116
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=98.71 E-value=8.1e-08 Score=95.02 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=24.6
Q ss_pred eeCCCcEEe-eeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 446 GVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 446 ~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
.||+++.|. ++.|+.+++||++|.|.+...+.......++..|..+ ++|..+++|+++++
T Consensus 104 ~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~-~~i~~~v~Ig~~~~ 164 (254)
T cd03351 104 RIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGL-SAVHQFCRIGRHAM 164 (254)
T ss_pred EECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCc-ceECCCcEECCCCE
Confidence 334444432 3334444444444444444333333333333333333 33444444444443
No 117
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=98.71 E-value=8.1e-08 Score=91.07 Aligned_cols=67 Identities=19% Similarity=0.441 Sum_probs=45.2
Q ss_pred ceEEcCCcEEc-cceEeee----eE---EeeccCceE------eeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEe
Q 010554 406 DAIISHGCFLR-ECTVEHS----IV---DYYQTESEI------ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~S----ii---~~vg~~~~i------~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~ 471 (507)
+++||+||.|. +++|..+ +| ..+|.++.| .++++++ +.||.++.|.+|+|+++|.||.++++.
T Consensus 28 ~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~---~~Ig~~a~i~g~vIG~~v~IG~ga~V~ 104 (196)
T PRK13627 28 DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGEN---GHIGHGAILHGCVIGRDALVGMNSVIM 104 (196)
T ss_pred ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCC---CEECCCcEEeeEEECCCCEECcCCccC
Confidence 55666666666 4555442 22 234444444 3677888 788888888899999999999888887
Q ss_pred cCCC
Q 010554 472 NKDD 475 (507)
Q Consensus 472 ~~~~ 475 (507)
++..
T Consensus 105 ~g~~ 108 (196)
T PRK13627 105 DGAV 108 (196)
T ss_pred CCcE
Confidence 6543
No 118
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.69 E-value=6.3e-08 Score=103.51 Aligned_cols=68 Identities=22% Similarity=0.386 Sum_probs=48.8
Q ss_pred eeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 402 CRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 402 ~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
+.|. +++||++|.|+ +|.|.+++| +.++.++.+. ++++++ +.||++++|. +++|+++++||+++.+.+
T Consensus 274 ~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~---~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~ 348 (451)
T TIGR01173 274 VILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEG---CDVGPFARLRPGSVLGAGVHIGNFVETKN 348 (451)
T ss_pred eEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCC---cEECCeeEECCCCEECCCcEEccceeecC
Confidence 4444 57788888887 677888777 3566677764 777777 7788888887 577777777777766654
No 119
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=98.68 E-value=1.3e-07 Score=93.45 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=31.0
Q ss_pred eeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 454 RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 454 ~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
.+|+||+++.|+.++.+.+...+++......+..+.++ +.||+++.|+.+++
T Consensus 118 ~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~ 169 (254)
T TIGR01852 118 HDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQF-VRIGRYAMIGGLSA 169 (254)
T ss_pred cCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCC-cEECCCCEEeeeee
Confidence 45666666666666666555555555555555555555 55666666666654
No 120
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.4e-08 Score=100.45 Aligned_cols=78 Identities=22% Similarity=0.338 Sum_probs=60.0
Q ss_pred ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCC
Q 010554 406 DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPEL 484 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~ 484 (507)
+++++++|+|+ ++.|..||| +.+ |.||+.++|.||||++|++||+||.|.|| .++....+++
T Consensus 334 d~iv~~~t~i~~~s~ik~Svi-------------G~n---C~Ig~~~~v~nSilm~nV~vg~G~~Iens-IIg~gA~Ig~ 396 (433)
T KOG1462|consen 334 DSIVGDNTQIGENSNIKRSVI-------------GSN---CDIGERVKVANSILMDNVVVGDGVNIENS-IIGMGAQIGS 396 (433)
T ss_pred hhccCCCceecccceeeeeee-------------cCC---ccccCCcEEEeeEeecCcEecCCcceecc-eecccceecC
Confidence 67889999998 678888877 888 89999999999999999999999999984 5555555555
Q ss_pred CeEEcCCeEEEcCCCEeC
Q 010554 485 GFYIRSGITIIMEKATIE 502 (507)
Q Consensus 485 ~~~i~~g~~vig~~~~i~ 502 (507)
|..++ .|.||++=+++
T Consensus 397 gs~L~--nC~Ig~~yvVe 412 (433)
T KOG1462|consen 397 GSKLK--NCIIGPGYVVE 412 (433)
T ss_pred CCeee--eeEecCCcEEc
Confidence 44442 14555555555
No 121
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=98.67 E-value=3.6e-07 Score=94.35 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=9.4
Q ss_pred eeeeEEEEEeHHH
Q 010554 305 VASMGVYVFKKDV 317 (507)
Q Consensus 305 l~~~Giyif~~~i 317 (507)
...++.+++.+++
T Consensus 52 ~~~A~a~Iv~~d~ 64 (343)
T PRK00892 52 TTKAGAVIVSPDD 64 (343)
T ss_pred ccCCeEEEechhh
Confidence 4567888887764
No 122
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.67 E-value=7.6e-08 Score=103.18 Aligned_cols=113 Identities=21% Similarity=0.295 Sum_probs=65.4
Q ss_pred CCcCCCceec-ceeeeceEEcCCcEEc-cceEeeeeEE---eeccCceEe--eeecCCCcceeeCCCcEEeee-------
Q 010554 391 PRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVD---YYQTESEIA--SLLAEGKVPIGVGRNTKIRNC------- 456 (507)
Q Consensus 391 ~~~~~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii~---~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~ns------- 456 (507)
+.+.+.+.|+ +|.|.+|+||+||.|+ +|.|.+++|+ .+|.++.|. +.++++ +.||+++.|.+|
T Consensus 288 ~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~---~~ig~~~~i~~~~i~~~~~ 364 (456)
T PRK14356 288 SRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEG---ARVGNFVEMKKAVLGKGAK 364 (456)
T ss_pred eEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCC---CEecCCceeeeeEecCCcE
Confidence 3444555555 4777788888888887 5777777772 556666662 555555 556655555554
Q ss_pred ----------EeCCCCEECCCcEEecC-------CCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 457 ----------IIDKNVKIGKDVVIVNK-------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 457 ----------IIg~na~Ig~~~~i~~~-------~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+||+++.||.++.+.+. ..+++......+..+-.| +.||+++.|++|+++
T Consensus 365 i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~-~~ig~~~~i~~~~~v 431 (456)
T PRK14356 365 ANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAP-VTIGDGALVGAGSVI 431 (456)
T ss_pred ecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCC-cEECCCCEEcCCCEE
Confidence 45555555555544332 123333333334444445 567777777777754
No 123
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.67 E-value=6.1e-08 Score=77.60 Aligned_cols=77 Identities=23% Similarity=0.328 Sum_probs=57.2
Q ss_pred EEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCe
Q 010554 408 IISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGF 486 (507)
Q Consensus 408 iIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~ 486 (507)
+||++|+|+ ++.|.+|+| +++ +.||++++|.+|+|+++++|++++.|.+ ..+++..+...+.
T Consensus 1 ~ig~~~~I~~~~~i~~s~i-------------g~~---~~ig~~~~i~~s~i~~~~~i~~~~~i~~-~~i~~~~~i~~~~ 63 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVI-------------GRN---CKIGKNVVIDNSYIWDDVTIEDGCTIHH-SIVADGAVIGKGC 63 (79)
T ss_pred CccCCCEECCCCEEeccEE-------------CCC---CEECCCCEEeCcEEeCCCEECCCCEEeC-cEEcCCCEECCCC
Confidence 467888887 577777766 788 8999999999999999999999999986 3566665555555
Q ss_pred EEcCCeEEEcCCCEeC
Q 010554 487 YIRSGITIIMEKATIE 502 (507)
Q Consensus 487 ~i~~g~~vig~~~~i~ 502 (507)
++..| ++|+++++|+
T Consensus 64 ~i~~~-~~v~~~~~ig 78 (79)
T cd05787 64 TIPPG-SLISFGVVIG 78 (79)
T ss_pred EECCC-CEEeCCcEeC
Confidence 55444 4445555544
No 124
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.66 E-value=8.2e-08 Score=95.37 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=25.0
Q ss_pred eeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 455 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+|+||+++.|++++.+.+...+++......+..|.++ +.||+++.|++|+++
T Consensus 123 ~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~gs~V 174 (262)
T PRK05289 123 DCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQF-VRIGAHAMVGGMSGV 174 (262)
T ss_pred eEEECCCeEECCccccccccccCCcEEEeecceecCC-CEECCCCEEeeecce
Confidence 3444444444444444433344444444444444445 455666666666553
No 125
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.66 E-value=6.6e-08 Score=78.23 Aligned_cols=48 Identities=23% Similarity=0.498 Sum_probs=38.6
Q ss_pred EcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 409 ISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 409 Ig~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
||++|.|+ ++.|.+++| +++ +.|+++++|++|+|++++.||.++.|.+
T Consensus 2 ig~~~~I~~~~~i~~~~I-------------g~~---~~I~~~~~i~~s~i~~~~~ig~~~~l~~ 50 (81)
T cd04652 2 VGENTQVGEKTSIKRSVI-------------GAN---CKIGKRVKITNCVIMDNVTIEDGCTLEN 50 (81)
T ss_pred ccCCCEECCCCEEeCcEE-------------CCC---CEECCCCEEeCcEEeCCCEECCCCEEec
Confidence 67777776 566666665 777 7888889998899999999998888876
No 126
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.66 E-value=6.6e-08 Score=77.62 Aligned_cols=75 Identities=23% Similarity=0.412 Sum_probs=54.7
Q ss_pred EEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCe
Q 010554 408 IISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGF 486 (507)
Q Consensus 408 iIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~ 486 (507)
+||++|.|+ ++.|.+|+| +++ +.||++++|.+|+|+++++|++++.|.++ .+. ++.
T Consensus 1 ~ig~~~~I~~~~~i~~s~i-------------g~~---~~Ig~~~~i~~svi~~~~~i~~~~~i~~s-vv~------~~~ 57 (79)
T cd03356 1 LIGESTVIGENAIIKNSVI-------------GDN---VRIGDGVTITNSILMDNVTIGANSVIVDS-IIG------DNA 57 (79)
T ss_pred CccCCcEECCCCEEeCCEE-------------CCC---CEECCCCEEeCCEEeCCCEECCCCEEECC-EEC------CCC
Confidence 478888887 677777666 888 89999999999999999999999999874 232 223
Q ss_pred EEcCCeEEEcCCCEeCCCcc
Q 010554 487 YIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 487 ~i~~g~~vig~~~~i~~gt~ 506 (507)
.|..+ +.|..++.|+++++
T Consensus 58 ~i~~~-~~i~~~~~ig~~~~ 76 (79)
T cd03356 58 VIGEN-VRVVNLCIIGDDVV 76 (79)
T ss_pred EECCC-CEEcCCeEECCCeE
Confidence 34444 44444455555554
No 127
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=98.64 E-value=1.4e-07 Score=86.19 Aligned_cols=87 Identities=16% Similarity=0.352 Sum_probs=51.3
Q ss_pred ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEE-----eeeEeCCCCEECCCcEEecCCCCccC
Q 010554 406 DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKI-----RNCIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I-----~nsIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
++.||++|.|+ +|.|....- ...|+++ +.|+++|+| .+|+|++++.|+.+++|.+ ..+++.
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~---------~i~IG~~---~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~ 84 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFG---------RIVIRDG---ANVQDNCVIHGFPGQDTVLEENGHIGHGAILHG-CTIGRN 84 (155)
T ss_pred cEEECCCCEECCCcEEeCCCC---------cEEECCC---CEECCCCEEeecCCCCeEEcCCCEECCCcEEEC-CEECCC
Confidence 56677777775 455543100 0123666 667777777 4577777777777766654 355555
Q ss_pred CCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 480 DRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 480 ~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
.....+.++.+| ++|+++++|+++++
T Consensus 85 ~~Ig~~~~I~~g-~~Ig~~~~Ig~~s~ 110 (155)
T cd04745 85 ALVGMNAVVMDG-AVIGEESIVGAMAF 110 (155)
T ss_pred CEECCCCEEeCC-CEECCCCEECCCCE
Confidence 555555666555 55666666666654
No 128
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.64 E-value=1.6e-07 Score=101.47 Aligned_cols=51 Identities=18% Similarity=0.402 Sum_probs=26.3
Q ss_pred eeeeceEEcCCcEEc-cceEeeeeE---EeeccCceEe--eeecCCCcceeeCCCcEEee
Q 010554 402 CRIKDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA--SLLAEGKVPIGVGRNTKIRN 455 (507)
Q Consensus 402 ~~I~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~n 455 (507)
|.|.+|+|+++|.|+ ++.|.+++| ..+|.++++. +.++++ +.|++++.|.+
T Consensus 301 ~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~---~~Ig~~~~i~~ 357 (481)
T PRK14358 301 SVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEG---VHIGNFVETKN 357 (481)
T ss_pred CEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCC---CEECCCEEECC
Confidence 555566666666666 455666555 1344444442 444444 44444444333
No 129
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.63 E-value=5.9e-08 Score=90.75 Aligned_cols=14 Identities=36% Similarity=0.306 Sum_probs=8.2
Q ss_pred EEEcCCCEeCCCcc
Q 010554 493 TIIMEKATIEDGMV 506 (507)
Q Consensus 493 ~vig~~~~i~~gt~ 506 (507)
++||++++|+++++
T Consensus 169 ~~ig~~~~v~~~~~ 182 (197)
T cd03360 169 VTIGAGAIIGAGAV 182 (197)
T ss_pred CEECCCCEECCCCE
Confidence 45566666666554
No 130
>PLN02296 carbonate dehydratase
Probab=98.62 E-value=2e-07 Score=92.50 Aligned_cols=61 Identities=15% Similarity=0.443 Sum_probs=39.4
Q ss_pred eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
++|+++ |.||.||.|.+|+|+++|.||.+++|.++..+ .++..|..| ++|.++++|+++++
T Consensus 120 siIG~~---v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~I------g~~a~Igag-SvV~~~~~I~~~~~ 180 (269)
T PLN02296 120 TIIGDN---VTIGHSAVLHGCTVEDEAFVGMGATLLDGVVV------EKHAMVAAG-ALVRQNTRIPSGEV 180 (269)
T ss_pred cEeCCC---CEECCCceecCCEECCCcEECCCcEECCCeEE------CCCCEECCC-CEEecCCEeCCCeE
Confidence 567777 77888888888888888888888888654333 233344444 44555555555543
No 131
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.62 E-value=1.7e-07 Score=86.24 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=44.4
Q ss_pred eccCceEe--eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEE
Q 010554 428 YQTESEIA--SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 488 (507)
Q Consensus 428 vg~~~~i~--s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i 488 (507)
+++++.|. ++|+++ +.|+++++|.+|+|+++++|+.++.+.++ .+++..+...+..+
T Consensus 44 I~~~~~i~~~~~Ig~~---~~I~~~~~i~~siig~~~~I~~~~~i~~s-iIg~~~~I~~~~~i 102 (163)
T cd05636 44 IGPNAYIRGYTVLGDG---CVVGNSVEVKNSIIMDGTKVPHLNYVGDS-VLGENVNLGAGTIT 102 (163)
T ss_pred ECCCCEEcCCCEECCC---CEECCCcEEeeeEecCCCEeccCCEEecC-EECCCCEECCCcEE
Confidence 45666673 889999 89999999999999999999988777653 56666666655554
No 132
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.61 E-value=1.7e-07 Score=100.16 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=56.8
Q ss_pred ceEEcCCcEEc-cceEeeeeE---EeeccCceEe--eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccC
Q 010554 406 DAIISHGCFLR-ECTVEHSIV---DYYQTESEIA--SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
++.||+||.|+ ++.|.+++| ..+|.++.|. ++++++ |.||+++.|.+++|++++.|+.++.+.++ .+++.
T Consensus 286 ~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~---~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~-~ig~~ 361 (446)
T PRK14353 286 GVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEG---AKVGNFVEVKNAKLGEGAKVNHLTYIGDA-TIGAG 361 (446)
T ss_pred CCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCC---eEEcCceEEeceEECCCCEECCeeEEcCc-EEcCC
Confidence 35566666665 456666666 3567777663 777777 77888888888888877766666555442 44444
Q ss_pred CCCCCCeEE-------cCCeEEEcCCCEeCCCcc
Q 010554 480 DRPELGFYI-------RSGITIIMEKATIEDGMV 506 (507)
Q Consensus 480 ~~~~~~~~i-------~~g~~vig~~~~i~~gt~ 506 (507)
.+...+..+ ..+ ++||+++.|+.|++
T Consensus 362 ~~Ig~~~~~~~~~~~~~~~-~~Ig~~~~ig~~~~ 394 (446)
T PRK14353 362 ANIGAGTITCNYDGFNKHR-TEIGAGAFIGSNSA 394 (446)
T ss_pred cEECCceeeeccccccCCC-cEECCCcEECCCCE
Confidence 444444322 112 44555555555543
No 133
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=98.61 E-value=2.6e-07 Score=91.45 Aligned_cols=66 Identities=11% Similarity=-0.057 Sum_probs=29.9
Q ss_pred eeecCCCcceeeCCCcEEe--------eeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 436 SLLAEGKVPIGVGRNTKIR--------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~--------nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
..|+++ +.|+++|+|. +++||+++.|+.++.|.+.+.+++......+..+..+ ++||+++.|+.++
T Consensus 77 v~IG~~---~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~-~~Igd~~~Ig~~~ 150 (254)
T TIGR01852 77 LIIGDN---NTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGH-VEVGDYAIIGGLV 150 (254)
T ss_pred EEECCC---CEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCC-cEECCCcEEeccC
Confidence 344555 4555555554 3355555555555555443344443333333333333 4444444444433
No 134
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.59 E-value=1.6e-07 Score=100.71 Aligned_cols=105 Identities=15% Similarity=0.270 Sum_probs=69.2
Q ss_pred CCceec-ceeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECC
Q 010554 395 PPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGK 466 (507)
Q Consensus 395 ~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~ 466 (507)
+++.|+ +|.|. +++||+||.|+ +|.|.+|+| ..+++++.+. ++++++ +.||+++.|. ++.|+++++||+
T Consensus 270 ~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~---~~Ig~~~~i~~~~~i~~~~~ig~ 346 (456)
T PRK09451 270 RDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAA---CTIGPFARLRPGAELAEGAHVGN 346 (456)
T ss_pred CCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCC---cEecCceEEeCCCEECCCceecc
Confidence 345555 46666 68899999998 688888888 3667777774 777777 7888888887 788888888888
Q ss_pred CcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 467 DVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 467 ~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
++.|.++ .+++........++ |-+.||+++.|++++
T Consensus 347 ~~~i~~~-~i~~~~~~~~~~~~--g~~~ig~~~~ig~~~ 382 (456)
T PRK09451 347 FVEMKKA-RLGKGSKAGHLTYL--GDAEIGDNVNIGAGT 382 (456)
T ss_pred ceeeece-eeCCCCccCccccc--cccEECCCCEEcCCe
Confidence 7777643 34444443332222 224555555555444
No 135
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.59 E-value=1.6e-07 Score=100.78 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=69.2
Q ss_pred CCcCCCceec-ceeeeceEEcCCcEEc-cceEeeeeE---EeeccCceEe--eeecCCCcceeeCCCcE-----------
Q 010554 391 PRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA--SLLAEGKVPIGVGRNTK----------- 452 (507)
Q Consensus 391 ~~~~~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~--s~l~~g~~~~~Ig~~~~----------- 452 (507)
+.+.+.+.|+ ++.|.+|+||++|.|+ ++.+.+|+| ..+|.++.+. +.++++ +.||+++.
T Consensus 287 ~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~~~~~~ig~~~~ 363 (459)
T PRK14355 287 TRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAH---VKIGNFVETKKIVMGEGSK 363 (459)
T ss_pred CEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCC---CEECCCccccCCEECCCce
Confidence 3344445554 4777889999999998 688888888 3566666663 566666 55555433
Q ss_pred ------EeeeEeCCCCEECCCcEEecCC-------CCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 453 ------IRNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 453 ------I~nsIIg~na~Ig~~~~i~~~~-------~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
|.+|+|++++.||.++++.|.+ .+++......+..|-+| +.||++++|++|++|
T Consensus 364 ~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~-~~ig~~~~i~a~s~v 430 (459)
T PRK14355 364 ASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAP-VTVGRNSLIAAGTTV 430 (459)
T ss_pred eeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCC-cEECCCCEECCCCEE
Confidence 3346667777777777665432 23333333333333344 566777777777754
No 136
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.59 E-value=3.3e-07 Score=83.63 Aligned_cols=41 Identities=12% Similarity=0.369 Sum_probs=32.2
Q ss_pred eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccC
Q 010554 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
++|+++ +.|+++++|.+++|++++.||.++.+.+...+++.
T Consensus 62 ~~Ig~~---~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~ 102 (154)
T cd04650 62 TEIGDY---VTIGHNAVVHGAKVGNYVIVGMGAILLNGAKIGDH 102 (154)
T ss_pred eEECCC---CEECCCcEEECcEECCCCEEcCCCEEeCCCEECCC
Confidence 456887 88999999999999999999999888765444443
No 137
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=98.59 E-value=1.3e-07 Score=89.35 Aligned_cols=62 Identities=13% Similarity=0.342 Sum_probs=34.3
Q ss_pred eEEcCCcEEc-cceE-----eeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEee-eEeCCCCEECCCcEEe
Q 010554 407 AIISHGCFLR-ECTV-----EHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIV 471 (507)
Q Consensus 407 siIg~gc~I~-~~~I-----~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~n-sIIg~na~Ig~~~~i~ 471 (507)
.+||++|.|+ +|.| .+|+| +.++.++.+. |+++++ +.||.++.|.+ ++|++++.|+.++.+.
T Consensus 48 i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~---~~IG~ga~I~~g~~IG~~s~Vgags~V~ 120 (192)
T TIGR02287 48 IVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRN---ALVGMNAVVMDGAVIGENSIVAASAFVK 120 (192)
T ss_pred eEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCC---CEECCCcccCCCeEECCCCEEcCCCEEC
Confidence 3556666665 4555 34555 2455555553 566665 55666655543 5555555555555554
No 138
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=98.56 E-value=4e-07 Score=91.15 Aligned_cols=59 Identities=25% Similarity=0.328 Sum_probs=30.0
Q ss_pred eeCCCcEEee-eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 446 GVGRNTKIRN-CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 446 ~Ig~~~~I~n-sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
.||++++|.| +-|+.||+||++|.|..+.++.....+++.+.|.+. +.|.....|+|++
T Consensus 226 vIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~-vgI~gh~~IgD~~ 285 (338)
T COG1044 226 VIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQ-VGIAGHLEIGDGV 285 (338)
T ss_pred eecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcc-eeecCceEEcCCC
Confidence 3555555554 445555666666666655555555555554444332 3344444444443
No 139
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.55 E-value=1.8e-07 Score=100.35 Aligned_cols=92 Identities=25% Similarity=0.369 Sum_probs=62.2
Q ss_pred ceEEcCCcEEc-cceEeeeeE---EeeccCceE-eeeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEecCCCCccC
Q 010554 406 DAIISHGCFLR-ECTVEHSIV---DYYQTESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
++.||++|.|+ ++.|.+|+| +.++. ..+ .++++++ +.||++++|. +++||++++||.++.|.++ .+++.
T Consensus 283 ~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~-~~i~~~~ig~~---~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~-~i~~~ 357 (458)
T PRK14354 283 NTVIGEDCVIGPGSRIVDSTIGDGVTITN-SVIEESKVGDN---VTVGPFAHLRPGSVIGEEVKIGNFVEIKKS-TIGEG 357 (458)
T ss_pred ceEECCCCEECCCcEEeccEECCCCEEEE-EEEeCCEECCC---cEECCceEecCCCEEeCCcEECCceEEeee-EECCC
Confidence 57888999997 688888887 24553 333 4889998 8999999998 8999999999998888653 44444
Q ss_pred CCCCCCeEEcCCeEEEcCCCEeCCC
Q 010554 480 DRPELGFYIRSGITIIMEKATIEDG 504 (507)
Q Consensus 480 ~~~~~~~~i~~g~~vig~~~~i~~g 504 (507)
.......++ |.++||+++.|++|
T Consensus 358 ~~i~~~~~~--~~~~ig~~~~ig~~ 380 (458)
T PRK14354 358 TKVSHLTYI--GDAEVGENVNIGCG 380 (458)
T ss_pred CEecceeee--cCcccCCceEEcCc
Confidence 433333333 22344444444443
No 140
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.55 E-value=7.4e-07 Score=81.15 Aligned_cols=40 Identities=20% Similarity=0.518 Sum_probs=31.4
Q ss_pred eecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccC
Q 010554 437 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
+|+++ +.|+.+|.|.+++|++++.||.++.+.....+++.
T Consensus 62 ~Ig~~---~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~~~~ig~~ 101 (153)
T cd04645 62 IIGDN---VTVGHGAVLHGCTIGDNCLIGMGAIILDGAVIGKG 101 (153)
T ss_pred EEcCC---cEECCCcEEeeeEECCCCEECCCCEEcCCCEECCC
Confidence 67888 88999999999999999999988888754444333
No 141
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=98.54 E-value=3.1e-07 Score=94.91 Aligned_cols=10 Identities=30% Similarity=0.162 Sum_probs=4.0
Q ss_pred EcCCCEeCCC
Q 010554 495 IMEKATIEDG 504 (507)
Q Consensus 495 ig~~~~i~~g 504 (507)
||+++.|+.+
T Consensus 282 ig~~~~i~~~ 291 (343)
T PRK00892 282 IGDGVTITAM 291 (343)
T ss_pred ECCCCEEecC
Confidence 3444444333
No 142
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=98.54 E-value=3.8e-07 Score=93.27 Aligned_cols=61 Identities=25% Similarity=0.280 Sum_probs=27.4
Q ss_pred eeCCCcEEee-eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCC-----eEEEcCCCEeCCCcc
Q 010554 446 GVGRNTKIRN-CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG-----ITIIMEKATIEDGMV 506 (507)
Q Consensus 446 ~Ig~~~~I~n-sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g-----~~vig~~~~i~~gt~ 506 (507)
.||++++|.| +.|+.|++||+++.|.....+....+..++..+.++ -+.||+++.|+.++.
T Consensus 219 ~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~ 285 (324)
T TIGR01853 219 IIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSG 285 (324)
T ss_pred eecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCE
Confidence 3444444443 344555555555555554444333344443333222 034455555555443
No 143
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=2.5e-07 Score=94.48 Aligned_cols=37 Identities=30% Similarity=0.588 Sum_probs=35.1
Q ss_pred eE-eeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 433 EI-ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 433 ~i-~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
+| +|+|+.| ++|+++|.|++|||++++.||+||+|.+
T Consensus 308 ~V~nSVL~~~---v~I~~gs~i~~svim~~~~IG~~~~l~~ 345 (393)
T COG0448 308 TVENSVLFRG---VRIGKGSVIENSVIMPDVEIGEGAVLRR 345 (393)
T ss_pred EEEeeEEecC---eEECCCCEEEeeEEeCCcEECCCCEEEE
Confidence 44 6999999 9999999999999999999999999998
No 144
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.53 E-value=4e-07 Score=90.42 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=20.4
Q ss_pred eeecCCCcceeeCCCcEEee--------eEeCCCCEECCCcEEecCCCCccC
Q 010554 436 SLLAEGKVPIGVGRNTKIRN--------CIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~n--------sIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
..++++ +.|+++++|.+ ++||+++.|+.++.|.+.+.+++.
T Consensus 81 v~IG~~---~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~ 129 (262)
T PRK05289 81 LVIGDN---NTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNH 129 (262)
T ss_pred EEECCC---CEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCC
Confidence 345555 55555555543 345555555555555443333333
No 145
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.49 E-value=4.7e-07 Score=96.83 Aligned_cols=70 Identities=23% Similarity=0.369 Sum_probs=51.7
Q ss_pred ceEEcCCcEEc-cceEeeeeEE---eeccCceE-eeeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEecCCCCccC
Q 010554 406 DAIISHGCFLR-ECTVEHSIVD---YYQTESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~---~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
++.||++|.|+ +|.|.+|+|+ .+. .+++ .++++++ +.||++++|+ +++||+|++||+++.+.++ .+++.
T Consensus 273 ~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~---~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~-~ig~~ 347 (448)
T PRK14357 273 KTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDD---VSVGPFSRLREGTVLKKSVKIGNFVEIKKS-TIGEN 347 (448)
T ss_pred eeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCC---cEECCCcEECCcccccCCcEecCceeeecc-EEcCC
Confidence 57888888888 6788888771 232 2233 5899998 8899999996 5999999999998877652 44444
Q ss_pred C
Q 010554 480 D 480 (507)
Q Consensus 480 ~ 480 (507)
.
T Consensus 348 ~ 348 (448)
T PRK14357 348 T 348 (448)
T ss_pred c
Confidence 3
No 146
>PLN02472 uncharacterized protein
Probab=98.49 E-value=4.8e-07 Score=88.63 Aligned_cols=38 Identities=21% Similarity=0.496 Sum_probs=31.3
Q ss_pred eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCC
Q 010554 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDV 476 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~ 476 (507)
++|+++ |.||++|.|.+|+|+++|.||.+++|.++..+
T Consensus 127 tvIG~~---v~IG~~s~L~~~~Igd~v~IG~~svI~~gavI 164 (246)
T PLN02472 127 TLIDRY---VTIGAYSLLRSCTIEPECIIGQHSILMEGSLV 164 (246)
T ss_pred cEECCC---CEECCCcEECCeEEcCCCEECCCCEECCCCEE
Confidence 567888 88999999999999999999999888775443
No 147
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.48 E-value=1e-06 Score=80.45 Aligned_cols=87 Identities=20% Similarity=0.205 Sum_probs=50.2
Q ss_pred ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEee-----eEeCCCCEECCCcEEecCCCCccC
Q 010554 406 DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRN-----CIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~n-----sIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
++.||++|.|+ ++.|..+. -..+|+++ +.|+++|.|.. ++||+++.|++++.|.++ .+++.
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~---------~~i~Ig~~---~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~-~Ig~~ 84 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDN---------DSIYIGKY---SNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGA-KVGNY 84 (154)
T ss_pred eEEECCCCEEcCCeEEEcCC---------CcEEECCC---CEECCCCEEEeCCCCCeEECCCCEECCCcEEECc-EECCC
Confidence 45666666666 45554430 00123566 66777777664 667777777777766543 56666
Q ss_pred CCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 480 DRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 480 ~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
.....+..+..+ ++||+++.+++++.
T Consensus 85 ~~Ig~~~~i~~~-~~Ig~~~~vg~~~~ 110 (154)
T cd04650 85 VIVGMGAILLNG-AKIGDHVIIGAGAV 110 (154)
T ss_pred CEEcCCCEEeCC-CEECCCCEECCCCE
Confidence 665555555555 55566666665543
No 148
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.48 E-value=6e-07 Score=88.13 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=7.8
Q ss_pred eEeCCCCEECCCcEEec
Q 010554 456 CIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~ 472 (507)
++|++||.||.+|.|.+
T Consensus 174 ViIgDnv~IGa~a~I~~ 190 (269)
T TIGR00965 174 TIIEDNCFIGARSEIVE 190 (269)
T ss_pred eEECCCCEECCCCEEcC
Confidence 34444444444444433
No 149
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.47 E-value=7.1e-07 Score=94.20 Aligned_cols=232 Identities=19% Similarity=0.221 Sum_probs=124.6
Q ss_pred CeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEECCCC---------cEEEEEeCCCccccccc
Q 010554 215 ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG---------RIAQFAEKPSGANLKAM 285 (507)
Q Consensus 215 ~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id~~g---------rV~~~~eKp~~~~~~~~ 285 (507)
.-++|.++|+++...-...+. + .+++++++..+.+.+-+.+.|+...|+++ .+.+|..||...+.
T Consensus 54 pGv~V~s~D~vl~~~~~~~~~-~--~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem--- 127 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPDDPLID-W--DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEM--- 127 (414)
T ss_pred cceEEEecccccccCccccCC-C--CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHH---
Confidence 468999999554322122222 1 23677888888877667889999999888 89999999976543
Q ss_pred cccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC----------------CCchhhhhHHhhhhcCcEEEE
Q 010554 286 QVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT----------------SNDFGSEIIPAAIMEHDVQAY 349 (507)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~----------------~~d~~~dil~~li~~~~V~~~ 349 (507)
+-...++. ......++|++.|+.+..+.++...... +.++..|++..+..+....-.
T Consensus 128 ~~~~av~~-------~~~~~ldsG~~~~s~~~~e~L~~~~~~~~~~~~~y~~~~g~~~~ei~lY~Dfl~aLg~~~t~e~~ 200 (414)
T PF07959_consen 128 RASGAVLP-------DGNVLLDSGIVFFSSKAVESLLYLHVSPPLDLCTYYGLSGALPCEIDLYGDFLQALGPDATEEYP 200 (414)
T ss_pred HhCCcccC-------CCcccccccceeccHHHHHHHHHhccCchHhhhhhhhhcCCccceehHHHHHHHHhcCCccccCc
Confidence 21111111 1224679999999999877766432111 234445666555533211111
Q ss_pred EeccEEEecCCHHHHHHHHHHhhccC---CCccccCCCCCcc---cCCCcC----CCce--ecceeeeceEEcCCcEEc-
Q 010554 350 IFRDYWEDIGTIKSFYEANMALTKES---PAFHFYDPKTPFY---TSPRFL----PPTK--IDNCRIKDAIISHGCFLR- 416 (507)
Q Consensus 350 ~~~gyw~dIgt~~~y~~An~~ll~~~---~~~~~~~~~~~i~---~~~~~~----~p~~--i~~~~I~~siIg~gc~I~- 416 (507)
... ..+.+.-..+..|.+.+.+.- +---++-++..+| |...++ .+.. +...++..+.....+.++
T Consensus 201 ~~~--~~~~~~~~~l~~aR~~l~~~Lr~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (414)
T PF07959_consen 201 ENT--SNVLKEESELREARQKLWKLLRGTPLNVVPLPNGKFYHFGTSREYLEHLTSDSELGIMRRKFSHSPATTPSDSEA 278 (414)
T ss_pred ccc--CCCcchhHHHHHHHHHHHHHhhhccccccccCCceEEEecCCHHHHHhhccCcccccceeeeeccccccccccCC
Confidence 000 111222233444444332211 1100111111111 111111 0011 111222222222233444
Q ss_pred cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCc
Q 010554 417 ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQ 477 (507)
Q Consensus 417 ~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~ 477 (507)
++.|.||+| ..+ +.||++++|++|.++.+.+||++|+|.+.+...
T Consensus 279 ~~~VinSil-------------~~~---~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~ 323 (414)
T PF07959_consen 279 SSCVINSIL-------------EGG---VSVGPGSVIEHSHLGGPWSIGSNCIISGVDINS 323 (414)
T ss_pred CeeEEEeEe-------------cCC---ceECCCCEEEeeecCCCCEECCCCEEECCcccc
Confidence 455666665 555 899999999999999999999999999875443
No 150
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.47 E-value=8.8e-07 Score=81.73 Aligned_cols=104 Identities=12% Similarity=0.093 Sum_probs=60.9
Q ss_pred CCcCCCceec-ceeee----ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEE
Q 010554 391 PRFLPPTKID-NCRIK----DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 464 (507)
Q Consensus 391 ~~~~~p~~i~-~~~I~----~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~I 464 (507)
..+.+.+.|+ .+.|. .+.||++|.|+ +|.|.+++.... ...-...++++ +.|+.+++|.+++||++|.|
T Consensus 18 v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~--~~~~~v~IG~~---~~i~~~~~i~~~~IGd~~~I 92 (164)
T cd04646 18 VTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDP--AEPKPMIIGSN---NVFEVGCKCEALKIGNNNVF 92 (164)
T ss_pred eEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCC--CCCCCeEECCC---CEECCCcEEEeeEECCCCEE
Confidence 3344444554 35553 35778888876 566766543100 00001345666 66777888888888888888
Q ss_pred CCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 465 GKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 465 g~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
|.++.|..+..+++. ..|..| ++|.++++|+++++
T Consensus 93 g~~a~I~~gv~Ig~~------~~Igag-svV~~~~~i~~~~v 127 (164)
T cd04646 93 ESKSFVGKNVIITDG------CIIGAG-CKLPSSEILPENTV 127 (164)
T ss_pred eCCCEECCCCEECCC------CEEeCC-eEECCCcEECCCeE
Confidence 888888765444333 344444 55555555655554
No 151
>PLN02296 carbonate dehydratase
Probab=98.47 E-value=5.3e-07 Score=89.46 Aligned_cols=88 Identities=19% Similarity=0.393 Sum_probs=61.4
Q ss_pred ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEe-----------eeEeCCCCEECCCcEEecC
Q 010554 406 DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIR-----------NCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~-----------nsIIg~na~Ig~~~~i~~~ 473 (507)
++.||++|.|. +|.|...+= ...|+++ +.|+++|.|. +|+||+++.||.+++|.+
T Consensus 70 ~V~IG~~~~I~~gavI~g~~~---------~I~IG~~---~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g- 136 (269)
T PLN02296 70 DVQVGRGSSIWYGCVLRGDVN---------SISVGSG---TNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHG- 136 (269)
T ss_pred ceEECCCCEECCCCEEEcCCC---------ceEECCC---CEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecC-
Confidence 56677777775 555553310 0134677 7788888774 688999999999988854
Q ss_pred CCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 474 DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 474 ~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+.+++...+..+..|.+| ++|++++.|++|++|
T Consensus 137 ~~Igd~v~IG~ga~I~~g-v~Ig~~a~IgagSvV 169 (269)
T PLN02296 137 CTVEDEAFVGMGATLLDG-VVVEKHAMVAAGALV 169 (269)
T ss_pred CEECCCcEECCCcEECCC-eEECCCCEECCCCEE
Confidence 567777777777777777 677888887777754
No 152
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.46 E-value=4.6e-07 Score=73.09 Aligned_cols=33 Identities=12% Similarity=0.422 Sum_probs=30.4
Q ss_pred ecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecC
Q 010554 438 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 438 l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~ 473 (507)
|+++ +.||++++|.+|+|+++++|++++.|.++
T Consensus 20 Ig~~---~~Ig~~~~i~~sii~~~~~i~~~~~i~~s 52 (80)
T cd05824 20 IGPN---VTIGDGVRLQRCVILSNSTVRDHSWVKSS 52 (80)
T ss_pred ECCC---CEECCCcEEeeeEEcCCCEECCCCEEeCC
Confidence 3788 89999999999999999999999999874
No 153
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.46 E-value=2e-06 Score=81.15 Aligned_cols=20 Identities=25% Similarity=0.029 Sum_probs=11.8
Q ss_pred cEEEecCCHHHHHHHHHHhh
Q 010554 353 DYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 353 gyw~dIgt~~~y~~An~~ll 372 (507)
.++..++.++...+....+.
T Consensus 61 ~~iiai~~~~~~~~i~~~l~ 80 (201)
T TIGR03570 61 DLVVAIGDNKLRRRLFEKLK 80 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHH
Confidence 35666766666655555544
No 154
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.45 E-value=1e-06 Score=87.06 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=14.2
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEecCCC
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDD 475 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~ 475 (507)
+.||+++.|. ++.|+.+|.||++|.|.+...
T Consensus 102 t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~ 133 (255)
T PRK12461 102 TRIGNDNLLMAYSHVAHDCQIGNNVILVNGAL 133 (255)
T ss_pred EEEcccceeccCcEECCCCEECCCcEECCCCc
Confidence 3444444443 344444455555555544433
No 155
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.45 E-value=8e-07 Score=82.02 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=49.6
Q ss_pred ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeee-----------EeCCCCEECCCcEEecC
Q 010554 406 DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNC-----------IIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~ns-----------IIg~na~Ig~~~~i~~~ 473 (507)
++.||++|.|. ++.|..+- . ...|+++ +.|+++++|.++ +||+++.|+.++.|.+
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~-----~----~i~IG~~---~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~- 83 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEA-----G----PIIIGEN---NIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEA- 83 (164)
T ss_pred ceEECCCCEEcCCeEEecCC-----C----CeEECCC---CEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEe-
Confidence 56677777776 45554220 0 0123666 667777777653 4556655555555554
Q ss_pred CCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 474 DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 474 ~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
..+++......+..|.+| ++||+++.|++|++|
T Consensus 84 ~~IGd~~~Ig~~a~I~~g-v~Ig~~~~IgagsvV 116 (164)
T cd04646 84 LKIGNNNVFESKSFVGKN-VIITDGCIIGAGCKL 116 (164)
T ss_pred eEECCCCEEeCCCEECCC-CEECCCCEEeCCeEE
Confidence 345555555555555555 556666666666653
No 156
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.45 E-value=1.7e-06 Score=82.62 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=5.7
Q ss_pred EEEcCCCEeCCCc
Q 010554 493 TIIMEKATIEDGM 505 (507)
Q Consensus 493 ~vig~~~~i~~gt 505 (507)
++||+++.|++++
T Consensus 169 ~~ig~~~~i~~~s 181 (205)
T cd03352 169 LTIGDGVVIGAGS 181 (205)
T ss_pred cEECCCCEEcCCC
Confidence 3344444444443
No 157
>PLN02472 uncharacterized protein
Probab=98.44 E-value=9.2e-07 Score=86.64 Aligned_cols=87 Identities=14% Similarity=0.188 Sum_probs=52.7
Q ss_pred ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEe-----------eeEeCCCCEECCCcEEecC
Q 010554 406 DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIR-----------NCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~-----------nsIIg~na~Ig~~~~i~~~ 473 (507)
++.||++|.|. +++|+.. ...| .|+++ +.|++||+|. +++||++|+||.++.|.+
T Consensus 77 ~V~Ig~~a~I~~gavirgd-------~~~I--~IG~~---t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~- 143 (246)
T PLN02472 77 QVTVWDGASVWNGAVLRGD-------LNKI--TVGFC---SNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRS- 143 (246)
T ss_pred CEEECCCCEEcCCCEEecC-------Ccce--EECCC---CEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECC-
Confidence 56666666665 4443321 1111 34555 6677777773 577888888888887764
Q ss_pred CCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 474 DDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 474 ~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+.+++...++.+..|-.| ++|++++.|++|++
T Consensus 144 ~~Igd~v~IG~~svI~~g-avIg~~~~Ig~gsv 175 (246)
T PLN02472 144 CTIEPECIIGQHSILMEG-SLVETHSILEAGSV 175 (246)
T ss_pred eEEcCCCEECCCCEECCC-CEECCCCEECCCCE
Confidence 466666666666666555 55666666666654
No 158
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.44 E-value=1.2e-06 Score=80.55 Aligned_cols=88 Identities=20% Similarity=0.301 Sum_probs=61.4
Q ss_pred eEEcCCcEEc-cceEeeeeEEeeccCceE--eeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCC
Q 010554 407 AIISHGCFLR-ECTVEHSIVDYYQTESEI--ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPE 483 (507)
Q Consensus 407 siIg~gc~I~-~~~I~~Sii~~vg~~~~i--~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~ 483 (507)
+.||++|.|+ +|.|..+.. .+.+..+ ...++++ +.|++++.|.+++|++++.||+++.|.....+++.
T Consensus 43 v~IG~~~~I~~~~~I~~~~~--~~~~~~~~~~v~Ig~~---~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~---- 113 (161)
T cd03359 43 VSIGRYCILSEGCVIRPPFK--KFSKGVAFFPLHIGDY---VFIGENCVVNAAQIGSYVHIGKNCVIGRRCIIKDC---- 113 (161)
T ss_pred eEECCCcEECCCCEEeCCcc--ccCCCccccCeEECCc---cEECCCCEEEeeEEcCCcEECCCCEEcCCCEECCC----
Confidence 6788888887 677776542 2223323 2567888 89999999999999999999999999876555444
Q ss_pred CCeEEcCCeEEEcCCCEeCCCcc
Q 010554 484 LGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 484 ~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
..+..| ++|+++++|+++++
T Consensus 114 --~~i~~g-~~V~~~~~i~~~~v 133 (161)
T cd03359 114 --VKILDG-TVVPPDTVIPPYSV 133 (161)
T ss_pred --cEECCC-CEECCCCEeCCCCE
Confidence 344445 45555555555554
No 159
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.44 E-value=1.9e-06 Score=78.98 Aligned_cols=64 Identities=19% Similarity=0.358 Sum_probs=46.3
Q ss_pred eeccCceEe------eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCE
Q 010554 427 YYQTESEIA------SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKAT 500 (507)
Q Consensus 427 ~vg~~~~i~------s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~ 500 (507)
.++.++.+. ..|+++ ++||.++.|..|.|+++|-||-|++|.|++.+++. ++||.++.
T Consensus 58 NIQDg~ViH~~~~~p~~IG~~---vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~-------------~iVgAgal 121 (176)
T COG0663 58 NIQDGVVIHADPGYPVTIGDD---VTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDG-------------SIVGAGAL 121 (176)
T ss_pred eecCCeEEecCCCCCeEECCC---cEEcCccEEEEeEECCCcEEecCceEeCCcEECCC-------------cEEccCCc
Confidence 445555552 678888 89999999999999999999999999986543332 55555555
Q ss_pred eCCCcc
Q 010554 501 IEDGMV 506 (507)
Q Consensus 501 i~~gt~ 506 (507)
+++|.+
T Consensus 122 V~~~k~ 127 (176)
T COG0663 122 VTPGKE 127 (176)
T ss_pred ccCCcC
Confidence 555543
No 160
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.43 E-value=7e-07 Score=96.50 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=41.2
Q ss_pred eeee-ceEEcCCcEEc-cceEeeeeEE---eeccCceE-eeeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEE
Q 010554 402 CRIK-DAIISHGCFLR-ECTVEHSIVD---YYQTESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVI 470 (507)
Q Consensus 402 ~~I~-~siIg~gc~I~-~~~I~~Sii~---~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i 470 (507)
+.|. +++||+||.|+ +|.|++|+|+ .++. +.+ .++++++ +.||+++.|. +++|+.+++||.++.+
T Consensus 284 ~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~---~~Ig~~~~i~~~~vIg~~~~ig~~~~~ 355 (482)
T PRK14352 284 TQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAG---ATVGPFTYLRPGTVLGEEGKLGAFVET 355 (482)
T ss_pred cEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCC---CEECCCeEecCCcEEcCCCEECCcEEE
Confidence 4443 57899999998 7888888772 2222 223 3666666 6677776665 5666666666554433
No 161
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.39 E-value=2.7e-06 Score=78.65 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=27.1
Q ss_pred eeeCCCcEEee-eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 445 IGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 445 ~~Ig~~~~I~n-sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+.|+.++.|.. ++||++|.||.++.|.+ ..+++......+..|. + +.|++++.++++++
T Consensus 71 ~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~-~~Ig~~~~Ig~~s~i~-~-~~i~~~~~v~~~~~ 130 (167)
T cd00710 71 VSIAHGAIVHGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVD-G-VEIPPGRYVPAGAV 130 (167)
T ss_pred ceECCCCEEeCCEEECCCCEECCCCEEEC-CEECCCCEEcCCCEEe-C-CEeCCCCEECCCCE
Confidence 44444444443 55555555555555543 2333333333333331 2 34455555555543
No 162
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.31 E-value=3.3e-06 Score=83.48 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=19.0
Q ss_pred eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 456 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
|.|+.++.|+.+|.|++...+........ + ++||+++.|+.++
T Consensus 108 ~~i~~~~~I~hd~~IG~~v~i~~~~~i~g------~-v~Igd~a~Ig~~a 150 (255)
T PRK12461 108 NLLMAYSHVAHDCQIGNNVILVNGALLAG------H-VTVGDRAIISGNC 150 (255)
T ss_pred ceeccCcEECCCCEECCCcEECCCCccCC------c-eEECCCeEEeCCC
Confidence 33344444444444444444433333322 2 4555555555544
No 163
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.31 E-value=1e-06 Score=87.30 Aligned_cols=29 Identities=7% Similarity=-0.020 Sum_probs=14.8
Q ss_pred CcEEEEEeccEEEe-------cCCHHHHHHHHHHhh
Q 010554 344 HDVQAYIFRDYWED-------IGTIKSFYEANMALT 372 (507)
Q Consensus 344 ~~V~~~~~~gyw~d-------Igt~~~y~~An~~ll 372 (507)
.+++.+....|..+ ..+|+.|..+..+++
T Consensus 51 ~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~i~~Di~ 86 (273)
T PRK11132 51 NKLASPIMPAIAIREVVEEAYAADPEMIASAACDIQ 86 (273)
T ss_pred HHhccccCCHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 34444444444443 455555555555554
No 164
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.29 E-value=3.2e-06 Score=76.93 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=31.5
Q ss_pred ecCCCcceeeCCCcEEee-----eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 438 LAEGKVPIGVGRNTKIRN-----CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 438 l~~g~~~~~Ig~~~~I~n-----sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
|+++ +.|+++++|.+ ++|++++.|+.+++|.+ ..+++......+..+.++ ++|++++.|++++
T Consensus 41 IG~~---~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~v~~~-~~ig~~~~ig~~~ 108 (153)
T cd04645 41 IGER---TNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHG-CTIGDNCLIGMGAIILDG-AVIGKGSIVAAGS 108 (153)
T ss_pred ECCC---CEECCCcEEecCCCCCeEEcCCcEECCCcEEee-eEECCCCEECCCCEEcCC-CEECCCCEECCCC
Confidence 3555 55566665554 36666666666655554 234444444444444433 3444444444443
No 165
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.29 E-value=3.2e-06 Score=83.05 Aligned_cols=69 Identities=16% Similarity=0.313 Sum_probs=36.3
Q ss_pred eeccCceEe--eeecCCCcceeeCCCcEEe-eeEeC--------CCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEE
Q 010554 427 YYQTESEIA--SLLAEGKVPIGVGRNTKIR-NCIID--------KNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITII 495 (507)
Q Consensus 427 ~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~-nsIIg--------~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vi 495 (507)
++|.++.|. +.|+.+ +.||+||+|. ++.|+ .+++||++|.|+..+.+.+ |..|..| ++|
T Consensus 131 ~IGeGt~I~~~a~IG~~---v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~------GV~IG~g-avI 200 (269)
T TIGR00965 131 YVDEGTMVDTWATVGSC---AQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVE------GVIVEEG-SVI 200 (269)
T ss_pred EECCCCEECCCcEECCC---CEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcC------CCEECCC-CEE
Confidence 345555552 455655 6666666665 34454 4466777776665544433 3334344 444
Q ss_pred cCCCEeCCCc
Q 010554 496 MEKATIEDGM 505 (507)
Q Consensus 496 g~~~~i~~gt 505 (507)
|.+++|++++
T Consensus 201 GaGavI~~~~ 210 (269)
T TIGR00965 201 SMGVFIGQST 210 (269)
T ss_pred eCCCEECCCC
Confidence 4444444444
No 166
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.28 E-value=1.9e-06 Score=89.55 Aligned_cols=67 Identities=34% Similarity=0.524 Sum_probs=58.7
Q ss_pred CCCcCCCceecceeeeceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCc
Q 010554 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDV 468 (507)
Q Consensus 390 ~~~~~~p~~i~~~~I~~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~ 468 (507)
.+.+.+++.|+.++|.+|+|++||.|+ +|.|.+|+| +++ +.||++++|++|+||++++||.++
T Consensus 294 ~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii-------------~~~---~~v~~~~~l~~~ivg~~~~i~~~~ 357 (361)
T TIGR02091 294 DSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVI-------------MGD---VGIGRGAVIRNAIIDKNVRIGEGV 357 (361)
T ss_pred CCEECCCCEECCCEEEccEECCCCEECCCCEEeeeEE-------------eCC---CEECCCCEEeeeEECCCCEECCCC
Confidence 345667777776678899999999998 789999887 888 899999999999999999999999
Q ss_pred EEec
Q 010554 469 VIVN 472 (507)
Q Consensus 469 ~i~~ 472 (507)
.|+|
T Consensus 358 ~i~~ 361 (361)
T TIGR02091 358 VIGN 361 (361)
T ss_pred EeCC
Confidence 9975
No 167
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.26 E-value=5.8e-06 Score=81.91 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=6.7
Q ss_pred eeEeCCCCEECCCcEEe
Q 010554 455 NCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~ 471 (507)
+++||++|.||.++.|.
T Consensus 194 Gv~IGdgavIgag~vV~ 210 (272)
T PRK11830 194 GVIVEEGSVLGMGVFLG 210 (272)
T ss_pred CCEECCCCEEcCCCEEc
Confidence 33334444444444433
No 168
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.25 E-value=2.8e-06 Score=88.55 Aligned_cols=34 Identities=38% Similarity=0.726 Sum_probs=26.3
Q ss_pred eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
|+++++ |.||+||+|.+|+|+++++|++++.+.+
T Consensus 305 s~i~~~---~~I~~~~~i~~sii~~~~~I~~~~~i~~ 338 (369)
T TIGR02092 305 SILSRG---VHVGKDALIKNCIIMQRTVIGEGAHLEN 338 (369)
T ss_pred CEECCC---CEECCCCEEEeeEEeCCCEECCCCEEEE
Confidence 777777 7777777777777777777777777766
No 169
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=98.23 E-value=5.3e-05 Score=79.88 Aligned_cols=214 Identities=20% Similarity=0.316 Sum_probs=125.6
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHh----cCCC-EEEEEecc-CchHHHHHHHhcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN----SGIN-KIFVLTQF-NSASLNRHIARTYFG 165 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~----~Gi~-~I~Vv~~~-~~~~l~~~l~~~~~~ 165 (507)
..++.+|+||||.||||. ..-||.|+||.....+++..++.+.. .|.+ -++|.++. ..+...+++.+ |++
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k-yfg 129 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK-YFG 129 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH-GCG
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH-hcC
Confidence 568899999999999998 57899999997655889988887765 2433 45666654 46778888876 765
Q ss_pred CCcc---cCCCeEEEecCcc-CCCC-------CCCCc-ccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceeccCCHH
Q 010554 166 NGTN---FGDGFVEVLAATQ-TPGE-------SGKNW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYM 231 (507)
Q Consensus 166 ~~~~---~~~~~V~vl~~~q-~~~~-------~~~~~-~~Gta~AL~~~~--~~l~~~~~~~~~~~lVl~gD~i~~~dl~ 231 (507)
...+ |.+..+-.+.... .+-+ ....| |-|.||...... ..+++....+.+.+.|.+.|.+...--.
T Consensus 130 ~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp 209 (420)
T PF01704_consen 130 LDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDP 209 (420)
T ss_dssp SSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-H
T ss_pred CCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCH
Confidence 4322 1111121111110 0000 00112 458887554432 2444444467899999999997754334
Q ss_pred HHHHHHHHcCCceEEEEEEcCCCCCccceEEEECCCCc--EEEEEeCCCccccccccccccccCCCccccccCCceeeeE
Q 010554 232 DFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMG 309 (507)
Q Consensus 232 ~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id~~gr--V~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 309 (507)
.++..+.++++++.+-+.+...+. ..-|++... +|+ |+++.+-|..... ...- .....+.++|
T Consensus 210 ~~lG~~~~~~~~~~~evv~Kt~~d-ek~Gvl~~~-~G~~~vvEysqip~~~~~-~~~~------------~~~~~~Fntn 274 (420)
T PF01704_consen 210 VFLGYMIEKNADFGMEVVPKTSPD-EKGGVLCRY-DGKLQVVEYSQIPKEHMA-EFKD------------IKGFLLFNTN 274 (420)
T ss_dssp HHHHHHHHTT-SEEEEEEE-CSTT-TSSEEEEEE-TTEEEEEEGGGS-HHGHH-HHTS------------TTTSBEEEEE
T ss_pred HHHHHHHhccchhheeeeecCCCC-CceeEEEEe-CCccEEEEeccCCHHHHH-hhhc------------cccceEEEec
Confidence 688889999999988777654322 234555432 354 5555554432110 0000 0012466888
Q ss_pred EEEEeHHHHHHHHHh
Q 010554 310 VYVFKKDVLFKLLRW 324 (507)
Q Consensus 310 iyif~~~iL~~ll~~ 324 (507)
--.|+-+.|.++++.
T Consensus 275 Ni~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 275 NIWFSLDFLKRLLER 289 (420)
T ss_dssp EEEEEHHHHHHHHHT
T ss_pred eeeEEHHHHHHHHHh
Confidence 889999999988764
No 170
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.23 E-value=2.6e-06 Score=90.54 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=56.2
Q ss_pred cCCCceecceeeeceEEcCCcEEc-cceEeeeeEE-------------eeccCceEe-eeecCCCcceeeCCCcEEeeeE
Q 010554 393 FLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVD-------------YYQTESEIA-SLLAEGKVPIGVGRNTKIRNCI 457 (507)
Q Consensus 393 ~~~p~~i~~~~I~~siIg~gc~I~-~~~I~~Sii~-------------~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~nsI 457 (507)
+.+.+.|+++.|.+|+||++|.|+ +|.|.+|+|+ .+|..+.+. |+|+++ |.||.++.+.+.-
T Consensus 285 i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~---~~ig~~~~~~~~~ 361 (430)
T PRK14359 285 IKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEG---TNIGAGTITCNYD 361 (430)
T ss_pred ECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCC---CEECCCceEcccc
Confidence 344555555666788888888887 6777778772 233334442 555555 5566655554310
Q ss_pred e--CCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCC
Q 010554 458 I--DKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEK 498 (507)
Q Consensus 458 I--g~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~ 498 (507)
- +.+++||++|.|+....+....++.++..|..| ++|.++
T Consensus 362 ~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g-~~v~~~ 403 (430)
T PRK14359 362 GKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAG-STVTKD 403 (430)
T ss_pred CccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCC-CEEccc
Confidence 0 012555566655555444455555555555555 333343
No 171
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.23 E-value=0.00011 Score=74.09 Aligned_cols=215 Identities=12% Similarity=0.138 Sum_probs=127.4
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc----CCC-EEEEEeccC-chHHHHHHHhcccCC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS----GIN-KIFVLTQFN-SASLNRHIARTYFGN 166 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~----Gi~-~I~Vv~~~~-~~~l~~~l~~~~~~~ 166 (507)
+++.+|+||||.||||. ..-||.|+||....+++++.++.+... |.+ -.+|.|++. .+...+++.+..+..
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~~~ 78 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGVN 78 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCCCc
Confidence 46789999999999996 578999999965448999999988642 432 456667654 566778886421211
Q ss_pred C--cccCCCeEEEecC------ccCCCCCCC-CcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceeccCCHHHHHH
Q 010554 167 G--TNFGDGFVEVLAA------TQTPGESGK-NWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYMDFIQ 235 (507)
Q Consensus 167 ~--~~~~~~~V~vl~~------~q~~~~~~~-~~~~Gta~AL~~~~--~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~ 235 (507)
. .-|.++.+.-+.. .+....... -.|.|.||...... ..+++....+.+++.+.+.|.+...-=-.++.
T Consensus 79 ~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~lg 158 (300)
T cd00897 79 VDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILN 158 (300)
T ss_pred cCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHHH
Confidence 0 0011111100000 000000111 22457776555331 12333334678999999999977532246888
Q ss_pred HHHHcCCceEEEEEEcCCCCCccceEEEE-CCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEe
Q 010554 236 SHVDRDADITISCAAVGESRASDYGLVKI-DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFK 314 (507)
Q Consensus 236 ~h~~~~a~~tl~~~~~~~~~~~~~g~v~i-d~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~ 314 (507)
.|..+++++++=+.+...+. +.-|++.. |..=+|+++.|-|..... ... + .....+.+++.+.|+
T Consensus 159 ~~~~~~~~~~~evv~Kt~~d-ek~G~l~~~~g~~~vvEyse~p~e~~~-~~~-~-----------~~~~~~~nt~n~~~~ 224 (300)
T cd00897 159 HMVDNKAEYIMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVD-EFK-S-----------IKKFKIFNTNNLWVN 224 (300)
T ss_pred HHHhcCCceEEEEeecCCCC-CcccEEEEECCEEEEEEeccCCHHHHH-hhc-C-----------cccceEEEEeEEEEE
Confidence 99999999887665544321 23455443 332357777777754321 000 0 001257899999999
Q ss_pred HHHHHHHHHh
Q 010554 315 KDVLFKLLRW 324 (507)
Q Consensus 315 ~~iL~~ll~~ 324 (507)
-+.|.++++.
T Consensus 225 l~~L~~~~~~ 234 (300)
T cd00897 225 LKAVKRVVEE 234 (300)
T ss_pred HHHHHHHHHh
Confidence 9999887653
No 172
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.23 E-value=3.2e-06 Score=73.13 Aligned_cols=69 Identities=13% Similarity=0.219 Sum_probs=36.7
Q ss_pred eeee-ceEEcCCcEEc-cceE-eeeeE---EeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecC
Q 010554 402 CRIK-DAIISHGCFLR-ECTV-EHSIV---DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 402 ~~I~-~siIg~gc~I~-~~~I-~~Sii---~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~ 473 (507)
+.|. +++||++|.|+ ++.| .+++| ..++..+.+......+ ..+..++.+.+++|++++.||.++.+.+.
T Consensus 11 ~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~---~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~ 85 (119)
T cd03358 11 VFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPR---SKIYRKWELKGTTVKRGASIGANATILPG 85 (119)
T ss_pred cEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCc---cccccccccCCcEECCCcEECcCCEEeCC
Confidence 4443 56777777776 4555 34544 1233333332111222 12334455667777788888877777654
No 173
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.22 E-value=4.7e-06 Score=86.39 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=56.9
Q ss_pred CCCCCcccCCCcCCCceec-ceeeeceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCC-cEEeeeEe
Q 010554 382 DPKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRN-TKIRNCII 458 (507)
Q Consensus 382 ~~~~~i~~~~~~~~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~-~~I~nsII 458 (507)
.+...+ ..+.+.+|+.|+ +|.|.+++|+++|.|+ +|.|.+|.| .+|+++++ +.|+.+ ++|.+|+|
T Consensus 258 ~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i--------~~s~i~~~---~~i~~~~~~~~~~ii 325 (353)
T TIGR01208 258 GEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEV--------EHSIVLDE---SVIEGVQARIVDSVI 325 (353)
T ss_pred CCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEE--------EeeEEcCC---CEEcCCcceeecCEE
Confidence 444444 444556677776 4777777777777776 455555443 14777999 889988 59999999
Q ss_pred CCCCEECCCcEEec
Q 010554 459 DKNVKIGKDVVIVN 472 (507)
Q Consensus 459 g~na~Ig~~~~i~~ 472 (507)
+++++|+.++.|.+
T Consensus 326 ~~~~~i~~~~~~~~ 339 (353)
T TIGR01208 326 GKKVRIKGNRRRPG 339 (353)
T ss_pred cCCCEECCCccccc
Confidence 99999999999974
No 174
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.20 E-value=3.1e-06 Score=90.05 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=29.5
Q ss_pred CCcCCCceecceeeeceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCC
Q 010554 391 PRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEG 441 (507)
Q Consensus 391 ~~~~~p~~i~~~~I~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g 441 (507)
+.+.++|.+.+|.|.+|+|++||.|+ +|.|++|+| +.+|.+++|. |+++++
T Consensus 328 s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~ 383 (425)
T PRK00725 328 SLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRG 383 (425)
T ss_pred CEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCC
Confidence 33445555555666666666666665 566666666 3455555552 444444
No 175
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.19 E-value=1.4e-05 Score=76.15 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=30.2
Q ss_pred eeecCCCcceeeCCCcEEe-----eeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 436 SLLAEGKVPIGVGRNTKIR-----NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~-----nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
.+++++ +.|++++.|. ++.|++++.|+.++.|.+...+++......+..+.++ +.||+++.|+.++
T Consensus 93 v~Ig~~---~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~-~~Ig~~~~ig~~~ 163 (205)
T cd03352 93 VIIGDD---VEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGS-TTIGDNVIIGGQV 163 (205)
T ss_pred EEECCC---EEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccc-cEECCCeEEcCCC
Confidence 344444 5555555553 3455555555555555444444444333333333332 3444444444433
No 176
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.19 E-value=4.2e-06 Score=66.23 Aligned_cols=66 Identities=27% Similarity=0.508 Sum_probs=40.9
Q ss_pred eEEcCCcEEc-cceEee-eeEEeeccCceEeeeecCCCcceeeCCCcEEee---------eEeCCCCEECCCcEEecCCC
Q 010554 407 AIISHGCFLR-ECTVEH-SIVDYYQTESEIASLLAEGKVPIGVGRNTKIRN---------CIIDKNVKIGKDVVIVNKDD 475 (507)
Q Consensus 407 siIg~gc~I~-~~~I~~-Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~n---------sIIg~na~Ig~~~~i~~~~~ 475 (507)
+.||++|.|+ ++.|.. ++| +++ +.|++++.|.+ ..|++++.|+.++.+..
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~I-------------g~~---~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~--- 61 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVI-------------GDN---VNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHG--- 61 (78)
T ss_pred CEECCCeEECCCCEEeCcEEE-------------CCC---CEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeC---
Confidence 3566666665 455543 333 666 67777777775 35555555555555543
Q ss_pred CccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 476 VQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 476 ~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+ +.|++++.|+++++|
T Consensus 62 ---------------~-~~ig~~~~i~~~s~v 77 (78)
T cd00208 62 ---------------G-VKIGDNAVIGAGAVV 77 (78)
T ss_pred ---------------C-CEECCCCEECcCcEe
Confidence 3 678888888888764
No 177
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.18 E-value=7.6e-06 Score=73.28 Aligned_cols=17 Identities=35% Similarity=0.616 Sum_probs=8.4
Q ss_pred eEeCCCCEECCCcEEec
Q 010554 456 CIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~ 472 (507)
++|++++.||.++.|..
T Consensus 76 v~Ig~~~~Ig~~a~I~~ 92 (139)
T cd03350 76 VIIEDDVFIGANCEVVE 92 (139)
T ss_pred eEECCCCEECCCCEECC
Confidence 44455555555555543
No 178
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.15 E-value=6.3e-06 Score=87.20 Aligned_cols=34 Identities=21% Similarity=0.466 Sum_probs=19.1
Q ss_pred eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
|+|+++ |.||++|+|++|||+++|+||+++.|.+
T Consensus 332 svIg~~---~~I~~~~~i~~sii~~~~~i~~~~~i~~ 365 (407)
T PRK00844 332 SVLSPN---VVVESGAEVEDSVLMDGVRIGRGAVVRR 365 (407)
T ss_pred CEECCC---CEECCCCEEeeeEECCCCEECCCCEEEe
Confidence 555555 5555555555555555555555555554
No 179
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.14 E-value=2e-05 Score=73.53 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=14.5
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
+.|+.++.|. +++|+++|.||.++.+..
T Consensus 139 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~~ 167 (197)
T cd03360 139 VHIAPGVVLSGGVTIGEGAFIGAGATIIQ 167 (197)
T ss_pred CEECCCCEEcCCcEECCCCEECCCCEEcC
Confidence 4455555443 355555555555555544
No 180
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.12 E-value=6.3e-06 Score=86.24 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=61.6
Q ss_pred cCCCceecceeeeceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEee-----eEeCCCC
Q 010554 393 FLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIRN-----CIIDKNV 462 (507)
Q Consensus 393 ~~~p~~i~~~~I~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~n-----sIIg~na 462 (507)
+.+.+.|. +.+.+|+||++|.|+ +|.|++|+| +.+|.++.|. |+++++ +.||++++|.+ ++||+++
T Consensus 296 Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~---~~i~~~~~i~~~~~~~~~ig~~~ 371 (380)
T PRK05293 296 VVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN---AVIGDGVIIGGGKEVITVIGENE 371 (380)
T ss_pred ECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC---CEECCCCEEcCCCceeEEEeCCC
Confidence 33344443 245689999999998 789999999 4789999984 999999 89999999998 8999999
Q ss_pred EECCCcEEe
Q 010554 463 KIGKDVVIV 471 (507)
Q Consensus 463 ~Ig~~~~i~ 471 (507)
+|+++++|+
T Consensus 372 ~~~~~~~~~ 380 (380)
T PRK05293 372 VIGVGTVIG 380 (380)
T ss_pred CCCCCcEeC
Confidence 999888773
No 181
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.10 E-value=1.5e-05 Score=67.36 Aligned_cols=32 Identities=3% Similarity=0.005 Sum_probs=18.0
Q ss_pred ecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 438 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 438 l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
|+++ +.|+++++|.+++||++++||+++.++|
T Consensus 65 i~~~---~~i~~~~~lg~siIg~~v~ig~~~~~~~ 96 (101)
T cd05635 65 IEGY---SNKQHDGFLGHSYLGSWCNLGAGTNNSD 96 (101)
T ss_pred EcCC---CEecCcCEEeeeEECCCCEECCCceecc
Confidence 3555 4555555555555555555555555554
No 182
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=98.09 E-value=2.3e-05 Score=89.37 Aligned_cols=139 Identities=18% Similarity=0.192 Sum_probs=92.8
Q ss_pred eEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEECCC--CcEEEEEeCCCccccccccccccccC
Q 010554 216 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM--GRIAQFAEKPSGANLKAMQVDTSLLG 293 (507)
Q Consensus 216 ~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id~~--grV~~~~eKp~~~~~~~~~~~~~~~~ 293 (507)
.++|.+||.+..++=. +. .-.+++++......+.+-..+.|++..|.+ +++..+..||..++..++.-
T Consensus 154 g~li~~gDv~~~f~~~--~~--~~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~------ 223 (974)
T PRK13412 154 HTLIASGDVYIRSEQP--LQ--DIPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSK------ 223 (974)
T ss_pred ceEEEecchhhhcccc--cc--CCCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhc------
Confidence 7999999987766521 00 123466666666666666788999999877 68889999998765433221
Q ss_pred CCccccccCCceeeeEEEEEeHHHHHHHHHhhCC------CCCchhhhhHHhhh----------hcCcEEEEEec-cEEE
Q 010554 294 FSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP------TSNDFGSEIIPAAI----------MEHDVQAYIFR-DYWE 356 (507)
Q Consensus 294 ~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~------~~~d~~~dil~~li----------~~~~V~~~~~~-gyw~ 356 (507)
....+.++|+|+|+.+....+++..+. ...|+.+|++..+- +..++...... +.++
T Consensus 224 -------~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~ 296 (974)
T PRK13412 224 -------THLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFY 296 (974)
T ss_pred -------CCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeE
Confidence 123689999999999988777765332 13455666664432 23455555555 5689
Q ss_pred ecCCHHHHHHHHHHh
Q 010554 357 DIGTIKSFYEANMAL 371 (507)
Q Consensus 357 dIgt~~~y~~An~~l 371 (507)
.+||-..|+.....+
T Consensus 297 H~GTs~E~l~~~~~~ 311 (974)
T PRK13412 297 HYGTSRELISSTLAV 311 (974)
T ss_pred EecCcHHHhcCchhH
Confidence 999998888654443
No 183
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.09 E-value=9e-06 Score=76.65 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=12.9
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEe
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~ 471 (507)
+.|+.++.|. ++.|++++.||.++.+.
T Consensus 142 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~ 169 (201)
T TIGR03570 142 VHIAPGVTLSGGVVIGEGVFIGAGATII 169 (201)
T ss_pred CEECCCCEEeCCcEECCCCEECCCCEEe
Confidence 4444444444 34445555555554444
No 184
>PLN02694 serine O-acetyltransferase
Probab=98.07 E-value=7.3e-06 Score=81.41 Aligned_cols=78 Identities=18% Similarity=0.305 Sum_probs=55.0
Q ss_pred CcCCCceecc-eeee---ceEEcCCcEEc-cceEeeeeE-EeeccCceE-eeeecCCCcceeeCCCcEE-eeeEeCCCCE
Q 010554 392 RFLPPTKIDN-CRIK---DAIISHGCFLR-ECTVEHSIV-DYYQTESEI-ASLLAEGKVPIGVGRNTKI-RNCIIDKNVK 463 (507)
Q Consensus 392 ~~~~p~~i~~-~~I~---~siIg~gc~I~-~~~I~~Sii-~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I-~nsIIg~na~ 463 (507)
.+.|.++|++ +.|. .++||++|.|+ +|.|.+++. +..+.++.. ..+|+++ |.||.|++| .++.||++|+
T Consensus 162 dI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~---V~IGagA~Ilggi~IGd~a~ 238 (294)
T PLN02694 162 DIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDG---VLIGAGATILGNVKIGEGAK 238 (294)
T ss_pred EeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCC---eEECCeeEECCCCEECCCCE
Confidence 3445566763 5564 47899999998 677766554 222333334 3778888 888888888 6788888888
Q ss_pred ECCCcEEec
Q 010554 464 IGKDVVIVN 472 (507)
Q Consensus 464 Ig~~~~i~~ 472 (507)
||.|+++..
T Consensus 239 IGAgSVV~k 247 (294)
T PLN02694 239 IGAGSVVLI 247 (294)
T ss_pred ECCCCEECC
Confidence 888888874
No 185
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.05 E-value=1.7e-05 Score=67.13 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=32.2
Q ss_pred cCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 439 AEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 439 ~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+++ +.||. .|.+|+|+++++|+.++.|.+ ++||+++.|++++.
T Consensus 51 G~~---~~Ig~--~i~~svi~~~~~i~~~~~lg~--------------------siIg~~v~ig~~~~ 93 (101)
T cd05635 51 GPT---CKIGG--EVEDSIIEGYSNKQHDGFLGH--------------------SYLGSWCNLGAGTN 93 (101)
T ss_pred CCC---CEECC--EECccEEcCCCEecCcCEEee--------------------eEECCCCEECCCce
Confidence 555 55543 456888888888888888765 78899999998875
No 186
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.05 E-value=2.4e-05 Score=72.40 Aligned_cols=87 Identities=11% Similarity=0.159 Sum_probs=53.9
Q ss_pred CCCCcccCCCcCCCceec-ceeee-----ceEEcCCcEEc-cceEe-----eeeE---EeeccCceEe--eeecCCCcce
Q 010554 383 PKTPFYTSPRFLPPTKID-NCRIK-----DAIISHGCFLR-ECTVE-----HSIV---DYYQTESEIA--SLLAEGKVPI 445 (507)
Q Consensus 383 ~~~~i~~~~~~~~p~~i~-~~~I~-----~siIg~gc~I~-~~~I~-----~Sii---~~vg~~~~i~--s~l~~g~~~~ 445 (507)
+...+....++.+.+.|. ++.|. .+.||++|.|+ ++.+. ...| ..++..+.+. +.|+++ +
T Consensus 13 ~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~---~ 89 (167)
T cd00710 13 PTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDN---C 89 (167)
T ss_pred CCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCC---C
Confidence 333333333334444444 34443 25788888887 45553 2222 2345555553 778877 7
Q ss_pred eeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 446 GVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 446 ~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
.||.++.|.++.||+++.||.++.|.+
T Consensus 90 ~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~ 116 (167)
T cd00710 90 FIGFRSVVFNAKVGDNCVIGHNAVVDG 116 (167)
T ss_pred EECCCCEEECCEECCCCEEcCCCEEeC
Confidence 888888888888888888888888854
No 187
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=98.05 E-value=1.3e-05 Score=78.18 Aligned_cols=50 Identities=24% Similarity=0.492 Sum_probs=26.9
Q ss_pred ceEEcCCcEEc-cceEe-eeeEEeeccCceEeeeecCCCcceeeCCCcEEee---------eEeCCCCEECCCcEEe
Q 010554 406 DAIISHGCFLR-ECTVE-HSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRN---------CIIDKNVKIGKDVVIV 471 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~-~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~n---------sIIg~na~Ig~~~~i~ 471 (507)
+++||++|.|+ ++.|. +++| +++ |.||.++.|.+ ++||+++.||.++.|.
T Consensus 116 ~~~IG~~~~I~~~a~I~~~s~I-------------g~~---~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~ 176 (231)
T TIGR03532 116 GAEIGEGTMIDMNAVLGGRATV-------------GKN---VHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVIL 176 (231)
T ss_pred CeEECCCCEEccccccCCCcEE-------------CCC---cEEcCCcEEccccccccCCCeEECCCcEECCCCEEc
Confidence 46667777776 45553 4444 455 55555555542 4555555555555554
No 188
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.04 E-value=2.4e-05 Score=70.05 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=13.4
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEecC
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~ 473 (507)
+.||+++.|. ++.|++++.|++++.|.+.
T Consensus 82 ~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~ 111 (139)
T cd03350 82 VFIGANCEVVEGVIVGKGAVLAAGVVLTQS 111 (139)
T ss_pred CEECCCCEECCCCEECCCCEEcCCCEEcCC
Confidence 4444444442 4444444444444444443
No 189
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.03 E-value=1.2e-05 Score=85.54 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=56.2
Q ss_pred cCceE-eeeecCCCcceeeCCCcEEeeeEeCC-------------------CCEECCCcEEecCCCCccCCCCCCCeEEc
Q 010554 430 TESEI-ASLLAEGKVPIGVGRNTKIRNCIIDK-------------------NVKIGKDVVIVNKDDVQEADRPELGFYIR 489 (507)
Q Consensus 430 ~~~~i-~s~l~~g~~~~~Ig~~~~I~nsIIg~-------------------na~Ig~~~~i~~~~~~~e~~~~~~~~~i~ 489 (507)
.++.| +|+|+++ |.||+||+|.+|||+. ++.||+||.|.++ .++...+++++..+.
T Consensus 318 ~~~~i~~svi~~~---~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~-ii~~~~~i~~~~~~~ 393 (429)
T PRK02862 318 KNCSIHHSVLGIR---SRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRA-IIDKNARIGNNVRIV 393 (429)
T ss_pred CCcEEEEEEEeCC---cEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEE-EECCCcEECCCcEEe
Confidence 44555 5999999 8999999999999975 7999999999874 677777777777664
Q ss_pred CCe-----------EEEcCC-CEeCCCccC
Q 010554 490 SGI-----------TIIMEK-ATIEDGMVI 507 (507)
Q Consensus 490 ~g~-----------~vig~~-~~i~~gt~i 507 (507)
++. ++|+++ ++|+.++++
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (429)
T PRK02862 394 NKDNVEEADREDQGFYIRDGIVVVVKNAVI 423 (429)
T ss_pred cCCCcccccccccceEeeCCEEEEcCCcCC
Confidence 321 566666 667777654
No 190
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.01 E-value=1.6e-05 Score=76.08 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=11.8
Q ss_pred Cceecceeee-ceEEcCCcEEccceE
Q 010554 396 PTKIDNCRIK-DAIISHGCFLRECTV 420 (507)
Q Consensus 396 p~~i~~~~I~-~siIg~gc~I~~~~I 420 (507)
.+.+.++.|. ++.|+++|.|.++.|
T Consensus 14 ~a~i~~~~IG~~~~Ig~~a~I~~s~I 39 (204)
T TIGR03308 14 TAELTESKLGRYTEIGERTRLREVAL 39 (204)
T ss_pred CcEEeccEeCCCcEECCCcEEeCCEE
Confidence 3444444443 455555555544443
No 191
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.01 E-value=2.2e-05 Score=72.11 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=8.9
Q ss_pred EeCCCCEECCCcEEec
Q 010554 457 IIDKNVKIGKDVVIVN 472 (507)
Q Consensus 457 IIg~na~Ig~~~~i~~ 472 (507)
+||+++.|++++.+.+
T Consensus 74 ~Ig~~~~Ig~~~~i~~ 89 (161)
T cd03359 74 HIGDYVFIGENCVVNA 89 (161)
T ss_pred EECCccEECCCCEEEe
Confidence 4555555555555543
No 192
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.00 E-value=0.00031 Score=73.59 Aligned_cols=214 Identities=16% Similarity=0.270 Sum_probs=128.1
Q ss_pred CCCceEEEEEcCCCCCcccCCccCCCccceeec-CcchhhHHHHHHHHhc----CCC-EEEEEeccCchHHH-HHHHhcc
Q 010554 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINS----GIN-KIFVLTQFNSASLN-RHIARTY 163 (507)
Q Consensus 91 ~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~-g~ypLId~~L~~l~~~----Gi~-~I~Vv~~~~~~~l~-~~l~~~~ 163 (507)
.-.++.+|+||||.||||. ..-||.+++|. |+ ++++.+.+.+..+ +++ ..+|.++.+.++-. .+....|
T Consensus 102 ~~~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y 177 (472)
T COG4284 102 KLGKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDY 177 (472)
T ss_pred hcCceEEEEecCCcccccc---cCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhh
Confidence 3567899999999999998 56899999999 77 9999998877653 443 45677777774443 3444555
Q ss_pred cCCCc-c---cCCCeEE-EecCccC-----CCCCCCCcccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCceec-cCCH
Q 010554 164 FGNGT-N---FGDGFVE-VLAATQT-----PGESGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLY-RMDY 230 (507)
Q Consensus 164 ~~~~~-~---~~~~~V~-vl~~~q~-----~~~~~~~~~~Gta~AL~~~~~--~l~~~~~~~~~~~lVl~gD~i~-~~dl 230 (507)
++..+ + |.+..+- ++..+.. .+....-+|.|+|+--..... .+++....+.+.+.|.+.|.+. ..|+
T Consensus 178 ~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~ 257 (472)
T COG4284 178 FGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL 257 (472)
T ss_pred cCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH
Confidence 55311 1 1111111 1111100 000011235677754433322 3444445678999999999966 3565
Q ss_pred HHHHHHHHHcCCceEEEEEEcCCCCCccceEEE-ECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceee-e
Q 010554 231 MDFIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS-M 308 (507)
Q Consensus 231 ~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 308 (507)
.++.+|..++.+.++=+...... ..+-|++. .|+.-||+.+.|-|......-+. + .......++ .
T Consensus 258 -~~lg~~~~~~~e~~~e~t~Kt~a-~ekvG~Lv~~~g~~rllEysev~~~~~~~~~s-~----------~~~~~~n~Nni 324 (472)
T COG4284 258 -KFLGFMAETNYEYLMETTDKTKA-DEKVGILVTYDGKLRLLEYSEVPNEHREEFTS-D----------GKLKYFNTNNI 324 (472)
T ss_pred -HHHHHHHhcCcceeEEEeecccc-cccceEEEEeCCceEEEEEecCChhHhhhhcc-c----------cceeeeccccc
Confidence 67888999999887766553332 23456655 77777999999887642211000 0 000112344 7
Q ss_pred EEEEEeHHHHHHH
Q 010554 309 GVYVFKKDVLFKL 321 (507)
Q Consensus 309 Giyif~~~iL~~l 321 (507)
++|+++-+.|.+.
T Consensus 325 ~l~~~~~~~l~~~ 337 (472)
T COG4284 325 WLHLFSVKFLKEA 337 (472)
T ss_pred eeehhHHHHHHhh
Confidence 7888888877543
No 193
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.00 E-value=4.6e-06 Score=82.78 Aligned_cols=72 Identities=15% Similarity=0.156 Sum_probs=57.9
Q ss_pred cceEee-eeE---EeeccCceEe-eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCC
Q 010554 417 ECTVEH-SIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 491 (507)
Q Consensus 417 ~~~I~~-Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g 491 (507)
+|.|.+ |+| +.++.++++. |+++.+ ..++.++.|+.||+|++++||.|++|.+.+.+++++.+.+.-|+.+|
T Consensus 276 ~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~---~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~vn~g 352 (371)
T KOG1322|consen 276 NCSIGPNVVIGPRVRIEDGVRLQDSTILGA---DYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDYVNEG 352 (371)
T ss_pred ccEECCCceECCCcEecCceEEEeeEEEcc---ceechhHHHHhhhccccccccCceEEecccEeccceEEecccccccc
Confidence 565554 666 3678899994 999988 89999999999999999999999999998777777666666666555
No 194
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=97.96 E-value=2.7e-05 Score=83.15 Aligned_cols=62 Identities=13% Similarity=0.307 Sum_probs=47.9
Q ss_pred CCcCCCceecceeeeceEEcCCcEEc-cceEeeeeE-E---------------------eeccCceEe-eeecCCCccee
Q 010554 391 PRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIV-D---------------------YYQTESEIA-SLLAEGKVPIG 446 (507)
Q Consensus 391 ~~~~~p~~i~~~~I~~siIg~gc~I~-~~~I~~Sii-~---------------------~vg~~~~i~-s~l~~g~~~~~ 446 (507)
+.+.+++.|+++.|.+|+|+++|.|+ +|.|.+|++ + .+|.++.+. ++++++ +.
T Consensus 316 s~I~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~---v~ 392 (436)
T PLN02241 316 SIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKN---AR 392 (436)
T ss_pred eEEcCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCC---CE
Confidence 45677888888889999999999998 799999998 2 456666663 667666 67
Q ss_pred eCCCcEEee
Q 010554 447 VGRNTKIRN 455 (507)
Q Consensus 447 Ig~~~~I~n 455 (507)
||+++.|.+
T Consensus 393 Ig~~~~i~~ 401 (436)
T PLN02241 393 IGKNVVIIN 401 (436)
T ss_pred ECCCcEEec
Confidence 777777753
No 195
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=97.96 E-value=3.2e-05 Score=66.82 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=45.8
Q ss_pred cCCCceec-ceeee-ceEEcCCcEEc-cceEeeeeE--EeeccCceE-eeeecCCCcceeeCCCcEEee-eEeCCCCEEC
Q 010554 393 FLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIV--DYYQTESEI-ASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIG 465 (507)
Q Consensus 393 ~~~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii--~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~n-sIIg~na~Ig 465 (507)
+.+.++++ ++.|. +++||++|.|+ ++.+.++.+ ..+...+.+ .+.++++ +.||+++.|.+ ++|++++.|+
T Consensus 19 Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~---~~Ig~~~~v~~~~~ig~~~~i~ 95 (119)
T cd03358 19 IGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRG---ASIGANATILPGVTIGEYALVG 95 (119)
T ss_pred ECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCC---cEECcCCEEeCCcEECCCCEEc
Confidence 33334443 34443 56777777776 345555443 122223344 3677777 77888877754 7777788887
Q ss_pred CCcEEec
Q 010554 466 KDVVIVN 472 (507)
Q Consensus 466 ~~~~i~~ 472 (507)
.++.+..
T Consensus 96 ~~~~v~~ 102 (119)
T cd03358 96 AGAVVTK 102 (119)
T ss_pred cCCEEeC
Confidence 7777754
No 196
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=97.94 E-value=3.4e-05 Score=73.22 Aligned_cols=15 Identities=27% Similarity=0.585 Sum_probs=6.0
Q ss_pred eEeCCCCEECCCcEE
Q 010554 456 CIIDKNVKIGKDVVI 470 (507)
Q Consensus 456 sIIg~na~Ig~~~~i 470 (507)
|+|++++.||.++.|
T Consensus 72 siIg~~~~Ig~~a~i 86 (196)
T PRK13627 72 TIVGENGHIGHGAIL 86 (196)
T ss_pred CEECCCCEECCCcEE
Confidence 334444444443333
No 197
>PRK10502 putative acyl transferase; Provisional
Probab=97.92 E-value=3.2e-05 Score=72.63 Aligned_cols=15 Identities=7% Similarity=0.074 Sum_probs=8.1
Q ss_pred eEEcCCcEEc-cceEe
Q 010554 407 AIISHGCFLR-ECTVE 421 (507)
Q Consensus 407 siIg~gc~I~-~~~I~ 421 (507)
..||++|.|+ ++.|.
T Consensus 72 ~~IG~~~~Ig~~~~I~ 87 (182)
T PRK10502 72 LTIGDYAWIGDDVWLY 87 (182)
T ss_pred EEECCCeEECCCceec
Confidence 5566666665 34443
No 198
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=2.8e-05 Score=80.76 Aligned_cols=84 Identities=24% Similarity=0.351 Sum_probs=56.6
Q ss_pred eceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCC
Q 010554 405 KDAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPE 483 (507)
Q Consensus 405 ~~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~ 483 (507)
...+||.+|.|+ ++.|... +++++| |.||++++|.+|||++||+||+++.|.++ .+++....+
T Consensus 260 gp~~ig~~~~i~~~~~i~~~------------~~ig~~---~~I~~~~~i~~Sii~~~~~i~~~~~i~~s-Ii~~~~~ig 323 (358)
T COG1208 260 GPVVIGPGAKIGPGALIGPY------------TVIGEG---VTIGNGVEIKNSIIMDNVVIGHGSYIGDS-IIGENCKIG 323 (358)
T ss_pred CCEEECCCCEECCCCEECCC------------cEECCC---CEECCCcEEEeeEEEcCCEECCCCEEeee-EEcCCcEEC
Confidence 477888888888 4555431 234899 89999999999999999999999999874 555554433
Q ss_pred CCeEEcCCeEEEcCCCEeCCCcc
Q 010554 484 LGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 484 ~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
... .-.. +++|.++.|.+|++
T Consensus 324 ~~~-~i~d-~~~g~~~~i~~g~~ 344 (358)
T COG1208 324 ASL-IIGD-VVIGINSEILPGVV 344 (358)
T ss_pred Cce-eecc-eEecCceEEcCceE
Confidence 211 1122 44455555555443
No 199
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.90 E-value=0.00036 Score=70.66 Aligned_cols=215 Identities=12% Similarity=0.144 Sum_probs=124.1
Q ss_pred EEEEEcCCCCCcccCCccCCCccceee---cCcchhhHHHHHHHHhcC--------C-CEEEEEecc-CchHHHHHHHh-
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCINSG--------I-NKIFVLTQF-NSASLNRHIAR- 161 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI---~g~ypLId~~L~~l~~~G--------i-~~I~Vv~~~-~~~~l~~~l~~- 161 (507)
.+|+||||.||||. ..-||.++|| .|+ .++++..+.+.... . =-++|.|+. +.+...+++.+
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 47899999999998 6899999999 477 89999999886532 1 145777764 45667788864
Q ss_pred cccCCCcc----cCCCeEEEec-CccCC----CCC--CCCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceec-c
Q 010554 162 TYFGNGTN----FGDGFVEVLA-ATQTP----GES--GKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLY-R 227 (507)
Q Consensus 162 ~~~~~~~~----~~~~~V~vl~-~~q~~----~~~--~~~~~~Gta~AL~~~~--~~l~~~~~~~~~~~lVl~gD~i~-~ 227 (507)
.||+.... |.+..+-.+. .+... .+. -...|-|.||-..... ..+++....+.+.+.+..-|.+. .
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 33543211 1122222221 00000 000 0122568887655432 12343334677888888888854 3
Q ss_pred CCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEE--CCCCc--E--EEEEeCCCcccccc---ccccccccCCCccc
Q 010554 228 MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI--DNMGR--I--AQFAEKPSGANLKA---MQVDTSLLGFSPQE 298 (507)
Q Consensus 228 ~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~i--d~~gr--V--~~~~eKp~~~~~~~---~~~~~~~~~~~~~~ 298 (507)
.-.-.++-.+..+++++...+.+... .+.-|++.. ..+|+ | +++.|-+....... ...+. -.+.
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~--~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~-~~~~---- 230 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKP--KEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDD-KTGF---- 230 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCC--CCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCccc-cccc----
Confidence 33345666677888888776655332 245676643 23444 4 66666543111000 00000 0111
Q ss_pred cccCCceeeeEEEEEeHHHHHHHHHh
Q 010554 299 ARKCPYVASMGVYVFKKDVLFKLLRW 324 (507)
Q Consensus 299 ~~~~~~l~~~Giyif~~~iL~~ll~~ 324 (507)
+..-.+++.++|+-+.+.+.++.
T Consensus 231 ---s~f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 231 ---SPFPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred ---ccCCCeeeeEEEeHHHHHHHHhh
Confidence 23468999999999988887764
No 200
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=97.90 E-value=6e-05 Score=71.39 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=16.9
Q ss_pred eeeCCCcEEe---eeEeCCCCEECCCcEEec
Q 010554 445 IGVGRNTKIR---NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 445 ~~Ig~~~~I~---nsIIg~na~Ig~~~~i~~ 472 (507)
+.|+++++|. ++.||+||.|+.++.|.+
T Consensus 72 v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~ 102 (192)
T PRK09677 72 VQVNDYVHIACIESITIGRDTLIASKVFITD 102 (192)
T ss_pred CEECCCcEEccCceEEECCCCEECCCeEEEC
Confidence 5566666554 466666666666666653
No 201
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=97.90 E-value=4e-05 Score=64.57 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=17.4
Q ss_pred eeeCCCcE---EeeeEeCCCCEECCCcEEec
Q 010554 445 IGVGRNTK---IRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 445 ~~Ig~~~~---I~nsIIg~na~Ig~~~~i~~ 472 (507)
+.|+.++. +..++|++++.|+.++.+..
T Consensus 41 ~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~ 71 (101)
T cd03354 41 VTLGGKGKGGGKRHPTIGDNVVIGAGAKILG 71 (101)
T ss_pred CEECCCccCCcCCCCEECCCcEEcCCCEEEC
Confidence 55665554 55666666666666666654
No 202
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=97.89 E-value=0.0001 Score=73.47 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=10.7
Q ss_pred eeecCCCcceeeCCCcEEe
Q 010554 436 SLLAEGKVPIGVGRNTKIR 454 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~ 454 (507)
++++++ |.||.+|.|.
T Consensus 225 avIGhd---s~IG~gasIg 240 (341)
T TIGR03536 225 VMVGKG---SDLGGGCSTM 240 (341)
T ss_pred CEECCC---CEECCCCEEe
Confidence 566666 6677777773
No 203
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.88 E-value=0.00058 Score=64.38 Aligned_cols=218 Identities=18% Similarity=0.189 Sum_probs=131.5
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
.+..|+|+|-|..+|.. -|-+.+++|+ |||.|++..+.+++ |++|+|-+ .++.+.+.- +.| |
T Consensus 2 ~~~iAiIpAR~gSKgI~------~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A-~~y-------g 64 (228)
T COG1083 2 MKNIAIIPARGGSKGIK------NKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEA-KKY-------G 64 (228)
T ss_pred cceEEEEeccCCCCcCC------ccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHH-HHh-------C
Confidence 45679999999999986 3899999999 99999999999997 46665544 334443332 222 2
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCe-EEEEcCc--eeccCCHHHHHHHHHHcCCceEEEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN-VAILCGD--HLYRMDYMDFIQSHVDRDADITISC 248 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~-~lVl~gD--~i~~~dl~~ll~~h~~~~a~~tl~~ 248 (507)
.. +.+..+..... + ...|-+++..+...+. ..++ ++++.+- ++...++++.++.+.+...+-.+.+
T Consensus 65 ak-~~~~Rp~~LA~----D-~ast~~~~lh~le~~~-----~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa 133 (228)
T COG1083 65 AK-VFLKRPKELAS----D-RASTIDAALHALESFN-----IDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSA 133 (228)
T ss_pred cc-ccccCChhhcc----C-chhHHHHHHHHHHHhc-----cccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEE
Confidence 11 11222111110 0 0133345555555443 2344 5555443 3667889999999999888888888
Q ss_pred EEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC
Q 010554 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (507)
Q Consensus 249 ~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~ 328 (507)
.+.... + |-.. .+++|.+..+.|.|..... +=.++ ..+..+..+|+++.+.|.+ +
T Consensus 134 ~e~e~~-p--~k~f-~~~~~~~~~~~~~~~~~~r-rQ~Lp-------------k~Y~~NgaiYi~~~~~l~e---~---- 188 (228)
T COG1083 134 VECEHH-P--YKAF-SLNNGEVKPVNEDPDFETR-RQDLP-------------KAYRENGAIYINKKDALLE---N---- 188 (228)
T ss_pred eecccc-h--HHHH-HhcCCceeecccCCccccc-cccch-------------hhhhhcCcEEEehHHHHhh---c----
Confidence 776541 1 1111 1234777777776632210 00111 2366788899999998753 1
Q ss_pred CCchhhhhHHhhhhcCcEEEEEecc-EEEecCCHHHHHHHHHHhhc
Q 010554 329 SNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 329 ~~d~~~dil~~li~~~~V~~~~~~g-yw~dIgt~~~y~~An~~ll~ 373 (507)
..-| ..+...|..+. ...||++..|+..|+..+..
T Consensus 189 ~~~f----------~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 189 DCFF----------IPNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred Ccee----------cCCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 1111 12334555553 47899999999999987653
No 204
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=97.87 E-value=2.5e-05 Score=77.38 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=13.4
Q ss_pred eEeCCCCEECCCcEEecCCCCccCC
Q 010554 456 CIIDKNVKIGKDVVIVNKDDVQEAD 480 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~~~~~~e~~ 480 (507)
++|+++|.||.++.|..+..+++..
T Consensus 177 viIgDnv~IGa~s~I~~Gv~IGdga 201 (272)
T PRK11830 177 VIIEDNCFIGARSEVVEGVIVEEGS 201 (272)
T ss_pred eEEcCCCEECCCCEEcCCCEECCCC
Confidence 5666666666666664444444433
No 205
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.87 E-value=0.00061 Score=72.83 Aligned_cols=212 Identities=16% Similarity=0.231 Sum_probs=127.2
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeec---CcchhhHHHHHHHHhc--------------CCC-EEEEEecc-Cc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS--------------GIN-KIFVLTQF-NS 152 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~---g~ypLId~~L~~l~~~--------------Gi~-~I~Vv~~~-~~ 152 (507)
..++.+|+||||.||||. ..-||.|+||+ ++ .+++...+.+... +.. .++|.|+. ..
T Consensus 114 ~gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~ 189 (493)
T PLN02435 114 EGKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTD 189 (493)
T ss_pred cCCEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchh
Confidence 367889999999999998 67899999885 67 8999998876431 111 34777764 46
Q ss_pred hHHHHHHHh-cccCCCcccCCCeEEEecCcc-------------CCCCCCCCcccChHHHHHHHHH--HHHhhhcCCCCe
Q 010554 153 ASLNRHIAR-TYFGNGTNFGDGFVEVLAATQ-------------TPGESGKNWFQGTADAVRQFTW--VFEDAKNRNIEN 216 (507)
Q Consensus 153 ~~l~~~l~~-~~~~~~~~~~~~~V~vl~~~q-------------~~~~~~~~~~~Gta~AL~~~~~--~l~~~~~~~~~~ 216 (507)
+...+++.+ .||+.... .|.+..... .+. .-...|.|.||-...... .+++....+.+.
T Consensus 190 ~~T~~ff~~~~~FGl~~~----~V~fF~Q~~~P~~~~dg~i~l~~~~-~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~y 264 (493)
T PLN02435 190 EATRKFFESHKYFGLEAD----QVTFFQQGTLPCVSKDGKFIMETPF-KVAKAPDGNGGVYAALKSSRLLEDMASRGIKY 264 (493)
T ss_pred HHHHHHHHhCCCCCCCcc----ceEEEecCCcceECCCCCcccCCCc-ccccCCCCCcHHHHHHHHCCcHHHHHhcCCEE
Confidence 677888864 33553211 122211000 000 001235688876664422 344444567899
Q ss_pred EEEEcCcee-ccCCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEE-CCCCc--EEEEEeCCCcccccccccccccc
Q 010554 217 VAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI-DNMGR--IAQFAEKPSGANLKAMQVDTSLL 292 (507)
Q Consensus 217 ~lVl~gD~i-~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~i-d~~gr--V~~~~eKp~~~~~~~~~~~~~~~ 292 (507)
+.+.+-|.+ ...---.++-.+..+++++.+-+.+...+ ...-|++.. +.+|+ |+.+.|-+....... .-++..|
T Consensus 265 i~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~-~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~-~~~~g~L 342 (493)
T PLN02435 265 VDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYP-QEKVGVFVRRGKGGPLTVVEYSELDQAMASAI-NQQTGRL 342 (493)
T ss_pred EEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCC-CCceeEEEEecCCCCEEEEEeccCCHHHHhcc-Ccccccc
Confidence 999999995 43333567888889999987766544321 133576654 34555 666666553221100 0001111
Q ss_pred CCCccccccCCceeeeEEEEEeHHHHHHHHH
Q 010554 293 GFSPQEARKCPYVASMGVYVFKKDVLFKLLR 323 (507)
Q Consensus 293 ~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~ 323 (507)
.....+++.++|+-++|.++.+
T Consensus 343 ---------~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 343 ---------RYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred ---------ccchhhHHHhhccHHHHHHHHH
Confidence 1256788899999999988754
No 206
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=97.85 E-value=6.6e-05 Score=69.09 Aligned_cols=34 Identities=26% Similarity=0.530 Sum_probs=19.3
Q ss_pred eeecCCCcceeeCCCcEEee-eEeCCCCEECCCcEEec
Q 010554 436 SLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~n-sIIg~na~Ig~~~~i~~ 472 (507)
.+|+++ |.||.+++|.. +.||+++.||+++.+..
T Consensus 114 ~~Ig~~---v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~ 148 (162)
T TIGR01172 114 PTVGEG---VMIGAGAKVLGNIEVGENAKIGANSVVLK 148 (162)
T ss_pred CEECCC---cEEcCCCEEECCcEECCCCEECCCCEECC
Confidence 345555 55666665553 55666666666665553
No 207
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=97.83 E-value=7.8e-05 Score=58.86 Aligned_cols=64 Identities=25% Similarity=0.364 Sum_probs=30.8
Q ss_pred Cceec-ceeeec-eEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEee-eEeCCCCEECCCcEEe
Q 010554 396 PTKID-NCRIKD-AIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIV 471 (507)
Q Consensus 396 p~~i~-~~~I~~-siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~n-sIIg~na~Ig~~~~i~ 471 (507)
.+.+. ++.|.. +.||++|.|+ ++.+.++.. .....++.||+++.|.. |+|..+++||+++.|.
T Consensus 6 ~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~-------------~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~ 72 (78)
T cd00208 6 GVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATG-------------PNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIG 72 (78)
T ss_pred CeEECCCCEEeCcEEECCCCEECCCCEEEeccC-------------CCccCCcEECCCcEECCCCEEeCCCEECCCCEEC
Confidence 34444 255543 6677777776 455555422 00001144555555542 5555555555555554
Q ss_pred c
Q 010554 472 N 472 (507)
Q Consensus 472 ~ 472 (507)
.
T Consensus 73 ~ 73 (78)
T cd00208 73 A 73 (78)
T ss_pred c
Confidence 3
No 208
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=97.78 E-value=0.00016 Score=71.74 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=8.4
Q ss_pred eEeCCCCEECCCcEE
Q 010554 456 CIIDKNVKIGKDVVI 470 (507)
Q Consensus 456 sIIg~na~Ig~~~~i 470 (507)
+.||++|.||.|+.|
T Consensus 226 V~IGe~~~IGagA~I 240 (319)
T TIGR03535 226 ISIGERCLLGANSGL 240 (319)
T ss_pred EEECCCcEECCCCEE
Confidence 455555555555555
No 209
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.74 E-value=0.0012 Score=61.57 Aligned_cols=96 Identities=11% Similarity=0.099 Sum_probs=58.9
Q ss_pred CCccceeecC--cchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcc
Q 010554 115 AATPAVPVAG--CYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF 192 (507)
Q Consensus 115 ~PK~LlPI~g--~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~ 192 (507)
.+|+|+|+.| + |||+|+++.+. ..+++|+|+++.+. . +. ..+ +.++.. ... .
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~~-~--------~~----~~~---~~~i~d-~~~-------g 56 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPGQ-P--------LP----ELP---APVLRD-ELR-------G 56 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCCc-c--------cc----cCC---CCEecc-CCC-------C
Confidence 5899999999 9 99999999876 56899999997642 1 10 011 234431 211 1
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-ccCC-HHHHHHHHHH
Q 010554 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMD-YMDFIQSHVD 239 (507)
Q Consensus 193 ~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i-~~~d-l~~ll~~h~~ 239 (507)
+|...++..+.....+ ...+.++|+.||+- ...+ +..+++.+..
T Consensus 57 ~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 57 LGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred CCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 3555555544433211 12478999999993 3443 5666665433
No 210
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=97.73 E-value=0.00016 Score=66.39 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=32.0
Q ss_pred eeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEecCCCCccCCCCCCC
Q 010554 427 YYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELG 485 (507)
Q Consensus 427 ~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~ 485 (507)
.+|.++.|. ..+.-| |+||++|.|. +++|.++|+||++|.|+-+..+.+..++..+
T Consensus 74 ~IG~~vtIGH~aivHG---c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~ 131 (176)
T COG0663 74 TIGDDVTIGHGAVVHG---CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGG 131 (176)
T ss_pred EECCCcEEcCccEEEE---eEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCC
Confidence 456666662 334455 5666666665 5666666666666666665555554444433
No 211
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=97.70 E-value=0.00011 Score=68.03 Aligned_cols=28 Identities=39% Similarity=0.470 Sum_probs=12.7
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
+.||++|.|. +|+|.++++||+||+|+.
T Consensus 119 v~IG~~~~Ig~~a~I~~gv~Ig~~~~Vga 147 (169)
T cd03357 119 ITIGDNVWIGGGVIILPGVTIGDNSVIGA 147 (169)
T ss_pred cEeCCCEEECCCCEEeCCCEECCCCEECC
Confidence 4444444442 344444444444444443
No 212
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=97.66 E-value=0.00017 Score=61.19 Aligned_cols=18 Identities=11% Similarity=0.219 Sum_probs=11.1
Q ss_pred ceEEcCCcEEc-cceEeee
Q 010554 406 DAIISHGCFLR-ECTVEHS 423 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~S 423 (507)
++.||++|.|+ +|.|.++
T Consensus 21 ~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 21 GITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred ceEECCCCEECCCCEEECC
Confidence 46677777776 4556544
No 213
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=97.65 E-value=0.00015 Score=68.00 Aligned_cols=29 Identities=31% Similarity=0.596 Sum_probs=15.5
Q ss_pred eeeCCCcEE-eeeEeCCCCEECCCcEEecC
Q 010554 445 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 445 ~~Ig~~~~I-~nsIIg~na~Ig~~~~i~~~ 473 (507)
+.||+++.| .+|+|.++++||++++|..+
T Consensus 130 v~IGd~v~IG~~a~I~~gv~IG~~~vIgag 159 (183)
T PRK10092 130 VTIGNNVWIGGRAVINPGVTIGDNVVVASG 159 (183)
T ss_pred eEECCCcEECCCCEECCCCEECCCCEECCC
Confidence 455555555 34555555555555555443
No 214
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=97.64 E-value=0.00067 Score=67.40 Aligned_cols=75 Identities=21% Similarity=0.372 Sum_probs=35.7
Q ss_pred CcCCCceecc-eeee---ceEEcCCcEEc-cceEeeeeEEeecc---CceE-eeeecCCCcceeeCCCcEEe-eeEeCCC
Q 010554 392 RFLPPTKIDN-CRIK---DAIISHGCFLR-ECTVEHSIVDYYQT---ESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKN 461 (507)
Q Consensus 392 ~~~~p~~i~~-~~I~---~siIg~gc~I~-~~~I~~Sii~~vg~---~~~i-~s~l~~g~~~~~Ig~~~~I~-nsIIg~n 461 (507)
.+.|.++|++ +.|. ..+||++|.|+ +|.|-+.+. +|. +... ...|+++ |.||.|++|. ++.||+|
T Consensus 143 dI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~Vt--iGg~~~~~~~~~p~IGd~---V~IGaga~Ilggv~IG~~ 217 (273)
T PRK11132 143 DIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVT--LGGTGKTSGDRHPKIREG---VMIGAGAKILGNIEVGRG 217 (273)
T ss_pred EecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcE--EecCcccCCCcCCEECCC---cEEcCCCEEcCCCEECCC
Confidence 3344455553 3332 34666666666 455543322 221 1111 1445555 5555555554 3555555
Q ss_pred CEECCCcEEe
Q 010554 462 VKIGKDVVIV 471 (507)
Q Consensus 462 a~Ig~~~~i~ 471 (507)
|+||.|+.+.
T Consensus 218 a~IGAgSvV~ 227 (273)
T PRK11132 218 AKIGAGSVVL 227 (273)
T ss_pred CEECCCCEEC
Confidence 5555555554
No 215
>PLN02357 serine acetyltransferase
Probab=97.62 E-value=0.00024 Score=72.67 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=50.0
Q ss_pred cCCCceecc-eeee---ceEEcCCcEEc-cceEeeeeE-EeeccCceE-eeeecCCCcceeeCCCcEE-eeeEeCCCCEE
Q 010554 393 FLPPTKIDN-CRIK---DAIISHGCFLR-ECTVEHSIV-DYYQTESEI-ASLLAEGKVPIGVGRNTKI-RNCIIDKNVKI 464 (507)
Q Consensus 393 ~~~p~~i~~-~~I~---~siIg~gc~I~-~~~I~~Sii-~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I-~nsIIg~na~I 464 (507)
+.|.++|++ ..|. .++||++|.|+ +|.|.+++. +..+.+... ...|+++ |.||.|+.| .+..||++++|
T Consensus 229 I~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~---V~IGagA~IlggV~IGdga~I 305 (360)
T PLN02357 229 IHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDG---VLIGAGTCILGNITIGEGAKI 305 (360)
T ss_pred eCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCC---eEECCceEEECCeEECCCCEE
Confidence 344455653 4443 35677777777 466655443 222222222 3778888 889999888 47889999999
Q ss_pred CCCcEEec
Q 010554 465 GKDVVIVN 472 (507)
Q Consensus 465 g~~~~i~~ 472 (507)
|.|+++..
T Consensus 306 GAgSVV~~ 313 (360)
T PLN02357 306 GAGSVVLK 313 (360)
T ss_pred CCCCEECc
Confidence 99998875
No 216
>PLN02357 serine acetyltransferase
Probab=97.62 E-value=0.00016 Score=74.01 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=11.9
Q ss_pred eeEeCCCCEECCCcEEec
Q 010554 455 NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~ 472 (507)
+++||+|+.||.|+.|.+
T Consensus 278 ~piIGd~V~IGagA~Ilg 295 (360)
T PLN02357 278 HPKIGDGVLIGAGTCILG 295 (360)
T ss_pred CceeCCCeEECCceEEEC
Confidence 466777777777766654
No 217
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=97.61 E-value=0.0002 Score=64.02 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=15.6
Q ss_pred eecCCCcceeeCCCcEEeeeEeCCC----CEECCCcEEe
Q 010554 437 LLAEGKVPIGVGRNTKIRNCIIDKN----VKIGKDVVIV 471 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I~nsIIg~n----a~Ig~~~~i~ 471 (507)
.+..+ |.||+++.|. +.+..+ ++||++|.|+
T Consensus 49 ~Ighd---~~IG~~~~I~-~~l~G~~~~pV~IG~~~~IG 83 (147)
T cd04649 49 IVGKG---SDVGGGASIM-GTLSGGGNNVISIGKRCLLG 83 (147)
T ss_pred EECCC---CEECCCCEEE-EECCCCcccCEEECCCCEEC
Confidence 34555 5666666666 333333 4444444444
No 218
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=97.56 E-value=0.00021 Score=68.10 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=13.6
Q ss_pred CCCcCCCceecceeeeceEEcCCcEEc-cceE
Q 010554 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTV 420 (507)
Q Consensus 390 ~~~~~~p~~i~~~~I~~siIg~gc~I~-~~~I 420 (507)
.+.+.||.++... .+..||++|+|. +|.|
T Consensus 61 ~~~I~~~~~~~~g--~ni~IG~~v~In~~~~I 90 (203)
T PRK09527 61 NAWVEPPVYFSYG--SNIHIGRNFYANFNLTI 90 (203)
T ss_pred CcEEcCCEEEeeC--CCcEEcCCcEECCCcEE
Confidence 3445555554310 244566666555 4444
No 219
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=97.55 E-value=0.00035 Score=59.53 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=17.1
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEecCCC
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDD 475 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~ 475 (507)
+.||++|.|. +|+|..+++||+++.|..++.
T Consensus 57 v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~ 88 (107)
T cd05825 57 IVIGDGAWVAAEAFVGPGVTIGEGAVVGARSV 88 (107)
T ss_pred EEECCCCEECCCCEECCCCEECCCCEECCCCE
Confidence 5555555554 455555555555555555443
No 220
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=97.53 E-value=0.0012 Score=63.26 Aligned_cols=181 Identities=23% Similarity=0.267 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
.|||.|=|..+||.- |.|.|++|+ |||+|+++.+.++ .+++|+|.|.. +.+.+.+. .| + ..
T Consensus 1 iaiIpAR~gS~rlp~------Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~~-~~-------g-~~ 62 (217)
T PF02348_consen 1 IAIIPARGGSKRLPG------KNLKPLGGK-PLIEYVIERAKQSKLIDEIVVATDD--EEIDDIAE-EY-------G-AK 62 (217)
T ss_dssp EEEEEE-SSSSSSTT------GGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHHH-HT-------T-SE
T ss_pred CEEEecCCCCCCCCc------chhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHHH-Hc-------C-Ce
Confidence 389999999999964 999999999 9999999999997 57998887754 34444443 22 2 12
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-c-CCHHHHHHHHHHcCCc-eEEEEEEc
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDAD-ITISCAAV 251 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~-~dl~~ll~~h~~~~a~-~tl~~~~~ 251 (507)
+.+... .. ..++......+..+.. ...+.++.+.||.-+ + ..+..+++.+++..++ +.-...+.
T Consensus 63 v~~~~~-~~--------~~~~~r~~~~~~~~~~----~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~~ 129 (217)
T PF02348_consen 63 VIFRRG-SL--------ADDTDRFIEAIKHFLA----DDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDPV 129 (217)
T ss_dssp EEE--T-TS--------SSHHHHHHHHHHHHTC----STTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEEE
T ss_pred eEEcCh-hh--------cCCcccHHHHHHHhhh----hHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhccccccc
Confidence 322221 11 1244433333333322 112378888999944 3 4578899999888776 22223332
Q ss_pred CC----CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHH-HHHH
Q 010554 252 GE----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLFK 320 (507)
Q Consensus 252 ~~----~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~-iL~~ 320 (507)
.. .+.... ....+.++....+.+.+....... +... ...++...++|.++.. .+..
T Consensus 130 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~~ 190 (217)
T PF02348_consen 130 GSSVEIFNFNPL-KVLFDDDGLELYFSEHVIPYIRRN-----------PEEF-KYFYIRQVGIYAFRKEMFLER 190 (217)
T ss_dssp CSHHHHTSTTST-EEEECTTSBEEEEESSESSECHHH-----------HCSS-SSTEEEEEEEEEEEHHHHHHH
T ss_pred cchhhcccccce-EEEeccccchhhcccCCCcccccc-----------cccc-ccccccccccccccccccccc
Confidence 21 111111 223344555555555443211000 0000 0125778999999997 4443
No 221
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=97.51 E-value=0.00053 Score=61.37 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=23.2
Q ss_pred eecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCcc
Q 010554 437 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQE 478 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e 478 (507)
.++++ +.||.|+.| +..||+|++||+++.+.....+.+
T Consensus 75 ~IG~~---~~IG~ga~I-gv~IG~~~vIGaGsvV~k~t~i~~ 112 (147)
T cd04649 75 SIGKR---CLLGANSGI-GISLGDNCIVEAGLYVTAGTKVTL 112 (147)
T ss_pred EECCC---CEECCCCEE-eEEECCCCEECCCCEEeCCeEEEE
Confidence 44555 566666666 566677777777776665544433
No 222
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=97.51 E-value=0.0012 Score=62.49 Aligned_cols=115 Identities=21% Similarity=0.344 Sum_probs=77.3
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCch--HHHHHHHhcccCCCcccC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSA--SLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~--~l~~~l~~~~~~~~~~~~ 171 (507)
+.+||-|-=.+|||.- |.|+|+++. |||+++|+++..+ -+++|+|.|+...+ .|..+..+ .|
T Consensus 4 I~~IiQARmgStRLpg------KvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~--------~G 68 (241)
T COG1861 4 ILVIIQARMGSTRLPG------KVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS--------HG 68 (241)
T ss_pred EEEEeeecccCccCCc------chhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH--------cC
Confidence 3444444445677753 999999999 9999999999987 47899999975543 34444431 12
Q ss_pred CCeEEEecCccCCCCCCCCcccChH-HHHHHHHHHHHhhhcCCCCeEEEEcCce-eccCCH-HHHHHHHHHcCCce
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTA-DAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDY-MDFIQSHVDRDADI 244 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta-~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~~~dl-~~ll~~h~~~~a~~ 244 (507)
+.+. +|.. +.|..+...++. ...+.++=+.||. +.+..+ ..+++.|.++|+|.
T Consensus 69 ---~~vf--------------rGs~~dVL~Rf~~a~~a---~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 69 ---FYVF--------------RGSEEDVLQRFIIAIKA---YSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred ---eeEe--------------cCCHHHHHHHHHHHHHh---cCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 3333 3554 445555555542 3346788899999 445554 78899999999874
No 223
>PLN02739 serine acetyltransferase
Probab=97.51 E-value=0.00024 Score=72.17 Aligned_cols=62 Identities=15% Similarity=0.267 Sum_probs=34.1
Q ss_pred ceEEcCCcEEc-cceEeeeeEEeec-cCce---EeeeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 406 DAIISHGCFLR-ECTVEHSIVDYYQ-TESE---IASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~~vg-~~~~---i~s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
.++||++|.|+ +|.|.+.+. +| ++.+ -...|+++ |.||.|++|. ++.||+||+||.|+++..
T Consensus 225 GVVIG~~avIGdnv~I~~gVT--IGg~g~~~g~r~p~IGd~---V~IGagA~IlG~V~IGd~aiIGAGSVV~k 292 (355)
T PLN02739 225 GVVIGETAVIGDRVSILHGVT--LGGTGKETGDRHPKIGDG---ALLGACVTILGNISIGAGAMVAAGSLVLK 292 (355)
T ss_pred ceEECCCCEECCCCEEcCCce--eCCcCCcCCCCCcEECCC---CEEcCCCEEeCCeEECCCCEECCCCEECC
Confidence 45666666666 455543322 11 1111 11455666 6677776664 566777777777776653
No 224
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=97.50 E-value=0.00037 Score=59.02 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=9.5
Q ss_pred eeee-ceEEcCCcEEcc
Q 010554 402 CRIK-DAIISHGCFLRE 417 (507)
Q Consensus 402 ~~I~-~siIg~gc~I~~ 417 (507)
..|. ++.|+++|.|.+
T Consensus 22 v~IG~~~~Ig~~~~i~~ 38 (109)
T cd04647 22 ITIGDNVLIGPNVTIYD 38 (109)
T ss_pred eEECCCCEECCCCEEEC
Confidence 4453 466777776653
No 225
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=97.42 E-value=0.00074 Score=62.15 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=12.3
Q ss_pred eeEeCCCCEECCCcEEecC
Q 010554 455 NCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~~ 473 (507)
.++||++|.||.++.|.+.
T Consensus 113 ~~~Ig~~v~Ig~~a~I~~~ 131 (162)
T TIGR01172 113 HPTVGEGVMIGAGAKVLGN 131 (162)
T ss_pred CCEECCCcEEcCCCEEECC
Confidence 3566777777777776653
No 226
>PRK10191 putative acyl transferase; Provisional
Probab=97.40 E-value=0.0005 Score=62.09 Aligned_cols=33 Identities=27% Similarity=0.547 Sum_probs=22.8
Q ss_pred eecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 437 LLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
.++++ +.||.++.|. ++.||+++.||.++.+..
T Consensus 94 ~IGd~---~~Ig~~~~I~~~v~IG~~~~Igags~V~~ 127 (146)
T PRK10191 94 HIGNG---VELGANVIILGDITIGNNVTVGAGSVVLD 127 (146)
T ss_pred EECCC---cEEcCCCEEeCCCEECCCCEECCCCEECC
Confidence 45666 6677777776 477777777777777764
No 227
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=97.36 E-value=0.0013 Score=64.12 Aligned_cols=11 Identities=36% Similarity=0.601 Sum_probs=4.7
Q ss_pred ceeeCCCcEEe
Q 010554 444 PIGVGRNTKIR 454 (507)
Q Consensus 444 ~~~Ig~~~~I~ 454 (507)
|+.||+||.|.
T Consensus 182 Pv~IgdncliG 192 (271)
T COG2171 182 PVIIGDNCLIG 192 (271)
T ss_pred CeEECCccEec
Confidence 34444444443
No 228
>PRK10502 putative acyl transferase; Provisional
Probab=97.35 E-value=0.00098 Score=62.54 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=13.1
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
+.||+++.|. +|+|..+++||+++.|+.
T Consensus 125 i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga 153 (182)
T PRK10502 125 IVIGEGCWLAADVFVAPGVTIGSGAVVGA 153 (182)
T ss_pred EEEcCCcEEcCCCEEcCCCEECCCCEECC
Confidence 3444444443 344444444544444443
No 229
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.037 Score=57.07 Aligned_cols=186 Identities=14% Similarity=0.285 Sum_probs=104.0
Q ss_pred CCCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc----CCCE-EEEEeccCchHHHHHHHhccc
Q 010554 90 VDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS----GINK-IFVLTQFNSASLNRHIARTYF 164 (507)
Q Consensus 90 ~~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~----Gi~~-I~Vv~~~~~~~l~~~l~~~~~ 164 (507)
..-+++..+=|-||.||-|. -.-||.+++|-+-+..+|-++....+. +++- .++..+++-++--+.+.+.|-
T Consensus 99 ~~L~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~ 175 (498)
T KOG2638|consen 99 SLLNKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYA 175 (498)
T ss_pred HhhhheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhc
Confidence 34456777789999999998 578999999987668888777666543 4442 344556665544444445553
Q ss_pred CCCc--------ccCCCeE-EEecCccCCCC-CCCCcc-cChHHHHHHH--HHHHHhhhcCCCCeEEEEcCceec-cCCH
Q 010554 165 GNGT--------NFGDGFV-EVLAATQTPGE-SGKNWF-QGTADAVRQF--TWVFEDAKNRNIENVAILCGDHLY-RMDY 230 (507)
Q Consensus 165 ~~~~--------~~~~~~V-~vl~~~q~~~~-~~~~~~-~Gta~AL~~~--~~~l~~~~~~~~~~~lVl~gD~i~-~~dl 230 (507)
+... +|..-.. +.++.....++ +-..|| -|.|+-.... ...++.....+.+.++|-+.|.+. ..||
T Consensus 176 ~~kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL 255 (498)
T KOG2638|consen 176 GSKVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDL 255 (498)
T ss_pred CCceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeH
Confidence 3221 2221111 12222110111 123464 5777544322 123333334678999999999987 4666
Q ss_pred HHHHHHHHHcCCceEEEEEEcCCCCCccceEEEECCCCcEEEEEeCCCc
Q 010554 231 MDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSG 279 (507)
Q Consensus 231 ~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id~~grV~~~~eKp~~ 279 (507)
.++++..+.+....|-+++-.......-.++..+..-|++.+..-|..
T Consensus 256 -~ILn~~i~~~~ey~MEvTdKT~aDvKgGtLi~y~G~lrlLEiaQVP~e 303 (498)
T KOG2638|consen 256 -NILNHVINNNIEYLMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKE 303 (498)
T ss_pred -HHHHHHhcCCCceEEEecccchhhcccceEEeecCEEEEEEeccCChh
Confidence 567777777777666665443321111223333322345566555543
No 230
>PLN02694 serine O-acetyltransferase
Probab=97.34 E-value=0.0008 Score=67.04 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=15.5
Q ss_pred cEEeeeEeCCCCEECCCcEEecC
Q 010554 451 TKIRNCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 451 ~~I~nsIIg~na~Ig~~~~i~~~ 473 (507)
+..++++||+||.||.|++|.+.
T Consensus 208 ~~~r~piIGd~V~IGagA~Ilgg 230 (294)
T PLN02694 208 CGDRHPKIGDGVLIGAGATILGN 230 (294)
T ss_pred cCCCccEECCCeEECCeeEECCC
Confidence 33456777777777777777543
No 231
>PRK10191 putative acyl transferase; Provisional
Probab=97.33 E-value=0.0012 Score=59.54 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=20.2
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEecCCCC
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDV 476 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~~ 476 (507)
+.||+++.|. +|.|..+++||+++.|+.+..+
T Consensus 93 ~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V 125 (146)
T PRK10191 93 PHIGNGVELGANVIILGDITIGNNVTVGAGSVV 125 (146)
T ss_pred CEECCCcEEcCCCEEeCCCEECCCCEECCCCEE
Confidence 4567776665 5666666666666666665443
No 232
>PLN02830 UDP-sugar pyrophosphorylase
Probab=97.25 E-value=0.0087 Score=65.99 Aligned_cols=221 Identities=14% Similarity=0.145 Sum_probs=126.1
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeec---CcchhhHHHHHHHHhc-----------CC-CEEEEEeccC-chHHH
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS-----------GI-NKIFVLTQFN-SASLN 156 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~---g~ypLId~~L~~l~~~-----------Gi-~~I~Vv~~~~-~~~l~ 156 (507)
.++..|.||||.||||. ..-||.++|++ |+ ++++..++.+... +. =-++|.|+++ .+...
T Consensus 127 ~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 127 GNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred CcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 68889999999999998 57899999983 67 8999999887553 11 1357777654 56677
Q ss_pred HHHHhc-ccCCCcc----cCCCeEEEecCc-cCCC------CCCCCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcC
Q 010554 157 RHIART-YFGNGTN----FGDGFVEVLAAT-QTPG------ESGKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCG 222 (507)
Q Consensus 157 ~~l~~~-~~~~~~~----~~~~~V~vl~~~-q~~~------~~~~~~~~Gta~AL~~~~--~~l~~~~~~~~~~~lVl~g 222 (507)
+++.+. ||+.... |.++.+-.+... ...- ..-.-.|-|.||-.+... ..+++....+.+.+.+.+.
T Consensus 203 ~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~v 282 (615)
T PLN02830 203 KLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQD 282 (615)
T ss_pred HHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEec
Confidence 777642 3543211 111111111100 0000 000123567776555442 2344444467899999999
Q ss_pred ceec-cCCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEE--CCCCc----EEEEEeCCCccccccccccccccCCC
Q 010554 223 DHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI--DNMGR----IAQFAEKPSGANLKAMQVDTSLLGFS 295 (507)
Q Consensus 223 D~i~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~i--d~~gr----V~~~~eKp~~~~~~~~~~~~~~~~~~ 295 (507)
|.+. ..-.-.++-.+..+++++.+-+.+... ...-|++.. ..+|+ ++++.|.+.... ..+.+..-+...
T Consensus 283 DN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~--~a~~p~g~l~~~ 358 (615)
T PLN02830 283 TNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPLLR--ATGHPDGDVNDE 358 (615)
T ss_pred cchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHHHH--hccCCCcccccc
Confidence 9933 333378888999999998887766533 234565553 23344 345555543211 111111111100
Q ss_pred ccccccCCceeeeEEEEEeHHHHHHHHHh
Q 010554 296 PQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (507)
Q Consensus 296 ~~~~~~~~~l~~~Giyif~~~iL~~ll~~ 324 (507)
.. -+..=.|+...+++-..+.+.|+.
T Consensus 359 ~~---~s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 359 TG---YSPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred cc---cccCCCCceeeEeeHHHHHHHHHh
Confidence 00 011124888888998888888764
No 233
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=97.16 E-value=0.0013 Score=62.67 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=17.8
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEecCCC
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDD 475 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~ 475 (507)
+.||+++.|. +|+|.++++||++++|..+..
T Consensus 132 i~IGd~v~IG~~~~I~~gv~IG~~~vIgagsv 163 (203)
T PRK09527 132 ITIGNNVWIGSHVVINPGVTIGDNSVIGAGSV 163 (203)
T ss_pred eEECCCcEECCCCEEcCCCEECCCCEECCCCE
Confidence 5566665554 455666666666666655443
No 234
>PLN02739 serine acetyltransferase
Probab=97.07 E-value=0.0009 Score=68.07 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=11.5
Q ss_pred eeEeCCCCEECCCcEEec
Q 010554 455 NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~ 472 (507)
.++||+||.||.|++|..
T Consensus 257 ~p~IGd~V~IGagA~IlG 274 (355)
T PLN02739 257 HPKIGDGALLGACVTILG 274 (355)
T ss_pred CcEECCCCEEcCCCEEeC
Confidence 356666666666666654
No 235
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=97.05 E-value=0.0026 Score=63.38 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=8.6
Q ss_pred EEEcCCCEeCCCcc
Q 010554 493 TIIMEKATIEDGMV 506 (507)
Q Consensus 493 ~vig~~~~i~~gt~ 506 (507)
..||++++|++|++
T Consensus 242 I~IGd~~VVGAGaV 255 (319)
T TIGR03535 242 ISLGDDCVVEAGLY 255 (319)
T ss_pred eEECCCCEECCCCE
Confidence 34566666666654
No 236
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=97.04 E-value=0.0012 Score=66.13 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=9.2
Q ss_pred eEeCCCCEECCCcEE
Q 010554 456 CIIDKNVKIGKDVVI 470 (507)
Q Consensus 456 sIIg~na~Ig~~~~i 470 (507)
+.||++|.||.|+.|
T Consensus 251 V~IGe~~lIGagA~I 265 (341)
T TIGR03536 251 ISVGEGCLLGANAGI 265 (341)
T ss_pred EEECCCcEECCCCEE
Confidence 556666666666665
No 237
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=97.01 E-value=0.0026 Score=62.08 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=11.2
Q ss_pred eeeCCCc-EEeeeEeCCCCEECCCcEEec
Q 010554 445 IGVGRNT-KIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 445 ~~Ig~~~-~I~nsIIg~na~Ig~~~~i~~ 472 (507)
|-||.|+ .+..+++|+||.|+.|+.|..
T Consensus 189 cliGAns~~veGV~vGdg~VV~aGv~I~~ 217 (271)
T COG2171 189 CLIGANSEVVEGVIVGDGCVVAAGVFITQ 217 (271)
T ss_pred cEeccccceEeeeEeCCCcEEecceEEeC
Confidence 3344443 333344444444444444433
No 238
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=96.96 E-value=0.0022 Score=54.60 Aligned_cols=17 Identities=6% Similarity=0.171 Sum_probs=8.9
Q ss_pred eEeCCCCEECCCcEEec
Q 010554 456 CIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~ 472 (507)
.+|+++|.||.++.|..
T Consensus 57 v~Ig~~~~ig~~~~i~~ 73 (107)
T cd05825 57 IVIGDGAWVAAEAFVGP 73 (107)
T ss_pred EEECCCCEECCCCEECC
Confidence 45555555555555543
No 239
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=96.89 E-value=0.0042 Score=59.58 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=17.4
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEecC
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~ 473 (507)
+.||+|.-+. ++-|..+|+||++|++.|.
T Consensus 107 T~IGdnnl~May~HVAHDC~iGn~~ilaNn 136 (260)
T COG1043 107 TRIGDNNLIMAYAHVAHDCVIGNNCILANN 136 (260)
T ss_pred EEECCCCEEEEeeeeeccceecCcEEEecC
Confidence 4455554443 5666666666777776664
No 240
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=96.83 E-value=0.00078 Score=45.32 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=10.1
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEE
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVI 470 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i 470 (507)
+.|+.++.|. +|+|++++.|++++.|
T Consensus 8 ~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 8 VIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred CEECCCcEecCCCEECCCCEEcCCCEE
Confidence 3444444432 3444444444444443
No 241
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=96.80 E-value=0.004 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=13.1
Q ss_pred CeEEcCCeEEEcCCCEeCCCccC
Q 010554 485 GFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 485 ~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+..+..+ ++|+++++|+++++|
T Consensus 66 ~~~i~~~-~~Ig~~~~i~~~~~i 87 (101)
T cd03354 66 GAKILGN-ITIGDNVKIGANAVV 87 (101)
T ss_pred CCEEECc-CEECCCCEECCCCEE
Confidence 3444445 556777777776653
No 242
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.002 Score=63.40 Aligned_cols=28 Identities=25% Similarity=0.560 Sum_probs=17.6
Q ss_pred eeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 445 IGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 445 ~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
++||+|++|++|||-++|.|.+|+.+.+
T Consensus 313 vrvg~GvRl~~sIIl~d~ei~enavVl~ 340 (407)
T KOG1460|consen 313 VRVGPGVRLRESIILDDAEIEENAVVLH 340 (407)
T ss_pred ceecCCceeeeeeeccCcEeeccceEEe
Confidence 5566666666666666666666666655
No 243
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=96.78 E-value=0.0037 Score=58.25 Aligned_cols=63 Identities=25% Similarity=0.402 Sum_probs=40.3
Q ss_pred eEEcCCcEEc-cceEeeeeE-EeeccCc-eEeeeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 407 AIISHGCFLR-ECTVEHSIV-DYYQTES-EIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 407 siIg~gc~I~-~~~I~~Sii-~~vg~~~-~i~s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
.+||+-|.|+ +|.|.+.+- +..|.++ ...=.|++| +.||.|++|- |=-||+|++||+|+++..
T Consensus 88 vVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~---V~IGagAkILG~I~IGd~akIGA~sVVlk 154 (194)
T COG1045 88 VVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNG---VYIGAGAKILGNIEIGDNAKIGAGSVVLK 154 (194)
T ss_pred EEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCC---eEECCCCEEEcceEECCCCEECCCceEcc
Confidence 4566666666 455555443 1111111 122456787 8899988875 667899999999999875
No 244
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=96.78 E-value=0.0062 Score=56.32 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=11.2
Q ss_pred eeEeCCCCEECCCcEEec
Q 010554 455 NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~ 472 (507)
.+.||++|.||.++.|..
T Consensus 118 ~v~IG~~~~Ig~~a~I~~ 135 (169)
T cd03357 118 PITIGDNVWIGGGVIILP 135 (169)
T ss_pred CcEeCCCEEECCCCEEeC
Confidence 356666666666666654
No 245
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=96.77 E-value=0.008 Score=56.08 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=11.4
Q ss_pred eeEeCCCCEECCCcEEec
Q 010554 455 NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~ 472 (507)
.--||+|+.||+|+.|-.
T Consensus 119 hPtIg~~V~IGagAkILG 136 (194)
T COG1045 119 HPTIGNGVYIGAGAKILG 136 (194)
T ss_pred CCccCCCeEECCCCEEEc
Confidence 346666777777766654
No 246
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=96.72 E-value=0.0014 Score=57.60 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=20.4
Q ss_pred eeeCCCcEEeeeEeCCCCEECCCcEEecCCCCc
Q 010554 445 IGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQ 477 (507)
Q Consensus 445 ~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~ 477 (507)
+-|+++|++.-.-||.-+.+|+|++|++.+++.
T Consensus 91 VFieE~cVVnAAqIgsyVh~GknaviGrrCVlk 123 (184)
T KOG3121|consen 91 VFIEEECVVNAAQIGSYVHLGKNAVIGRRCVLK 123 (184)
T ss_pred EEEecceEeehhhheeeeEeccceeEcCceEhh
Confidence 667777777655556666666666666555443
No 247
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=96.71 E-value=0.0063 Score=57.58 Aligned_cols=10 Identities=10% Similarity=0.248 Sum_probs=4.8
Q ss_pred eEEcCCcEEc
Q 010554 407 AIISHGCFLR 416 (507)
Q Consensus 407 siIg~gc~I~ 416 (507)
+.||++|.|+
T Consensus 86 v~IG~~v~Ig 95 (192)
T PRK09677 86 ITIGRDTLIA 95 (192)
T ss_pred EEECCCCEEC
Confidence 3445555554
No 248
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=96.49 E-value=0.0061 Score=55.00 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=10.8
Q ss_pred eeeEeCCCCEECCCcEEec
Q 010554 454 RNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 454 ~nsIIg~na~Ig~~~~i~~ 472 (507)
.+++||++|.||.++.|..
T Consensus 72 ~~~~Ig~~~~Ig~~~~i~~ 90 (145)
T cd03349 72 GDVIIGNDVWIGHGATILP 90 (145)
T ss_pred CCcEECCCCEECCCCEEeC
Confidence 3455566666666655544
No 249
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=96.33 E-value=0.02 Score=53.79 Aligned_cols=17 Identities=41% Similarity=0.425 Sum_probs=9.9
Q ss_pred eEeCCCCEECCCcEEec
Q 010554 456 CIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~ 472 (507)
..||++|.||.+|+|..
T Consensus 130 v~IGd~v~IG~~a~I~~ 146 (183)
T PRK10092 130 VTIGNNVWIGGRAVINP 146 (183)
T ss_pred eEECCCcEECCCCEECC
Confidence 45566666666666644
No 250
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.30 E-value=0.0097 Score=56.66 Aligned_cols=73 Identities=26% Similarity=0.389 Sum_probs=44.5
Q ss_pred Cceecceee--e-ceEEcCCcEEccceEeeeeEEeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEE
Q 010554 396 PTKIDNCRI--K-DAIISHGCFLRECTVEHSIVDYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVI 470 (507)
Q Consensus 396 p~~i~~~~I--~-~siIg~gc~I~~~~I~~Sii~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i 470 (507)
.++++.+.+ + +.+||+++.+.-..+.+-|+ +|..+.|. .++..+ ++|+..|++. |.++.+++.||+.+.|
T Consensus 9 ~Tr~e~~~ivv~gdViIG~nS~l~~~V~g~~ii--vge~v~i~Gdiva~d---iridmw~kv~gNV~ve~dayiGE~~sI 83 (277)
T COG4801 9 NTRVEEAIIVVKGDVIIGKNSMLKYGVVGEEII--VGERVRIYGDIVAKD---IRIDMWCKVTGNVIVENDAYIGEFSSI 83 (277)
T ss_pred CCceeeeeEEEeccEEEcccceeeeeeeeeeEE--eccCcEEeeeEEecc---eeeeeeeEeeccEEEcCceEEecccee
Confidence 366664443 2 67888888887444444443 45555563 556655 6777777775 5555666666666666
Q ss_pred ecC
Q 010554 471 VNK 473 (507)
Q Consensus 471 ~~~ 473 (507)
+..
T Consensus 84 ~gk 86 (277)
T COG4801 84 KGK 86 (277)
T ss_pred eee
Confidence 543
No 251
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=96.21 E-value=0.0086 Score=67.62 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=14.4
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
+.||++|.|. +|+|.++++||+++.|..
T Consensus 646 v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~ 674 (695)
T TIGR02353 646 VTIGDGATLGPGAIVLYGVVMGEGSVLGP 674 (695)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECC
Confidence 4555555554 355555555555555543
No 252
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=96.15 E-value=0.01 Score=67.03 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=31.6
Q ss_pred eEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEecCCCC
Q 010554 407 AIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDV 476 (507)
Q Consensus 407 siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~~ 476 (507)
..||+||.|+ +|.+.+..+ +.+.. . -| ++.||+||.|. +|+|.+|++||+|++|..+..+
T Consensus 132 i~IG~~~~I~~~v~l~~~~~---~~~~l----~-~g--~i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V 193 (695)
T TIGR02353 132 LTIGAGTIVRKEVMLLGYRA---ERGRL----H-TG--PVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSAL 193 (695)
T ss_pred eEECCCCEECCCCEEEcccC---CCCce----e-ec--CcEECCCcEECCCCEEcCCCEECCCCEECCCCEe
Confidence 3577777777 466543222 11111 1 12 14566666664 5666666666666666655443
No 253
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=96.12 E-value=0.0064 Score=40.77 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=8.5
Q ss_pred eEeCCCCEECCCcEEec
Q 010554 456 CIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~ 472 (507)
++|++++.|+.++.|..
T Consensus 2 ~~Ig~~~~i~~~~~i~~ 18 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGG 18 (36)
T ss_dssp EEEETTEEEETTEEEET
T ss_pred CEEcCCCEECCCcEecC
Confidence 44555555555555543
No 254
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=95.88 E-value=0.049 Score=51.98 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=34.8
Q ss_pred EcCCcEEcc--ceEeeeeEEeeccCceEe-eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 409 ISHGCFLRE--CTVEHSIVDYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 409 Ig~gc~I~~--~~I~~Sii~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
|=++++++. .+++.++| +|..+.+. .+.++. +.+|+++.|..-|+.++++|+.||.+..
T Consensus 6 vPp~Tr~e~~~ivv~gdVi--IG~nS~l~~~V~g~~---iivge~v~i~Gdiva~diridmw~kv~g 67 (277)
T COG4801 6 VPPNTRVEEAIIVVKGDVI--IGKNSMLKYGVVGEE---IIVGERVRIYGDIVAKDIRIDMWCKVTG 67 (277)
T ss_pred cCCCCceeeeeEEEeccEE--Ecccceeeeeeeeee---EEeccCcEEeeeEEecceeeeeeeEeec
Confidence 344555442 23344444 56666664 566666 6677777777777766666666666654
No 255
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=95.78 E-value=0.0087 Score=52.69 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=16.5
Q ss_pred eeCCCcEEeeeEeCCCCEECCCcEEecCCCCc
Q 010554 446 GVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQ 477 (507)
Q Consensus 446 ~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~ 477 (507)
.||+.++ +|+||.||+.|+|.+++.+.
T Consensus 103 qIgsyVh-----~GknaviGrrCVlkdCc~il 129 (184)
T KOG3121|consen 103 QIGSYVH-----LGKNAVIGRRCVLKDCCRIL 129 (184)
T ss_pred hheeeeE-----eccceeEcCceEhhhheecc
Confidence 4555433 46667777777777776543
No 256
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=95.59 E-value=0.039 Score=49.77 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=18.5
Q ss_pred eeecCCCcceeeCCCcEE-eeeEeCCCCEECCCcEEec
Q 010554 436 SLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I-~nsIIg~na~Ig~~~~i~~ 472 (507)
.+|+++ |.||.++.| .++.||++|.||+++.+..
T Consensus 74 ~~Ig~~---~~Ig~~~~i~~gv~Ig~~~vIgags~V~~ 108 (145)
T cd03349 74 VIIGND---VWIGHGATILPGVTIGDGAVIAAGAVVTK 108 (145)
T ss_pred cEECCC---CEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 455555 555555555 2455555555555555543
No 257
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.37 E-value=0.33 Score=41.73 Aligned_cols=98 Identities=12% Similarity=0.019 Sum_probs=66.5
Q ss_pred ceeecCcchhhHHHHHHHHhcC--CCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChH
Q 010554 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~G--i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (507)
++|..|..+++.++++++.+.+ ..+++|+.+...+...+.+.+.... .. .+..+.... ..|.+
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~---------~~g~~ 66 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK---DP---RVIRVINEE---------NQGLA 66 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc---CC---CeEEEEecC---------CCChH
Confidence 4677777799999999999987 7889999888777666666533211 00 122222111 24889
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCH-HHHHHHH
Q 010554 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSH 237 (507)
Q Consensus 197 ~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl-~~ll~~h 237 (507)
.++..+..... .+.++++.+|.++..++ ..++..+
T Consensus 67 ~~~~~~~~~~~------~d~v~~~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 67 AARNAGLKAAR------GEYILFLDADDLLLPDWLERLVAEL 102 (156)
T ss_pred HHHHHHHHHhc------CCEEEEECCCCccCccHHHHHHHHH
Confidence 99988876653 57899999999998775 4442433
No 258
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=95.19 E-value=0.05 Score=50.91 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=20.5
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEecCCC
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDD 475 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~ 475 (507)
+.||+++.|. +++|.++++||+|++|..+..
T Consensus 125 v~IG~~vwIG~~a~IlpGV~IG~gavigagsV 156 (190)
T COG0110 125 VTIGEDVWIGAGAVILPGVTIGEGAVIGAGSV 156 (190)
T ss_pred eEECCCeEEcCccEECCCEEECCCcEEeeCCE
Confidence 6666666665 566777777777777766543
No 259
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=95.13 E-value=0.041 Score=52.32 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=15.6
Q ss_pred CCceecceeee----ceEEcCCcEEc-cceEeee
Q 010554 395 PPTKIDNCRIK----DAIISHGCFLR-ECTVEHS 423 (507)
Q Consensus 395 ~p~~i~~~~I~----~siIg~gc~I~-~~~I~~S 423 (507)
|.++|++..+. ..+||+-++|+ +++|-|-
T Consensus 153 paa~ig~gilldhatgvvigeTAvvg~~vSilH~ 186 (269)
T KOG4750|consen 153 PAAKIGKGILLDHATGVVIGETAVVGDNVSILHP 186 (269)
T ss_pred chhhcccceeeccccceeecceeEeccceeeecc
Confidence 44566653332 35666666666 3555443
No 260
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=94.12 E-value=0.24 Score=46.52 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=57.3
Q ss_pred chhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHH
Q 010554 126 YRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWV 205 (507)
Q Consensus 126 ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~ 205 (507)
.|||.|+++.+..+++++++|+++. +.+.+++. .++ ++++.... .|.+.+++.+...
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~--------~~~---v~~i~~~~----------~G~~~si~~al~~ 86 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPD--PALLEAAR--------NLG---APVLRDPG----------PGLNNALNAALAE 86 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHH--------hcC---CEEEecCC----------CCHHHHHHHHHHH
Confidence 3899999999999888888888874 33433332 112 34443211 2899999988766
Q ss_pred HHhhhcCCCCeEEEEcCcee--ccCCHHHHHHHHH
Q 010554 206 FEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHV 238 (507)
Q Consensus 206 l~~~~~~~~~~~lVl~gD~i--~~~dl~~ll~~h~ 238 (507)
+.. ..+.++++.||+- ....+.++++...
T Consensus 87 ~~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 87 ARE----PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred hhc----cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 541 2357999999993 3456777777653
No 261
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=94.09 E-value=0.071 Score=35.51 Aligned_cols=9 Identities=33% Similarity=0.453 Sum_probs=2.9
Q ss_pred eeeCCCcEE
Q 010554 445 IGVGRNTKI 453 (507)
Q Consensus 445 ~~Ig~~~~I 453 (507)
|.||.++.|
T Consensus 8 ~~ig~~~~i 16 (34)
T PF14602_consen 8 CFIGANSTI 16 (34)
T ss_dssp EEE-TT-EE
T ss_pred EEECccccc
Confidence 344444443
No 262
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=93.31 E-value=0.081 Score=47.12 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=9.3
Q ss_pred eEEcCCcEEcc-ceEee
Q 010554 407 AIISHGCFLRE-CTVEH 422 (507)
Q Consensus 407 siIg~gc~I~~-~~I~~ 422 (507)
-+||+||.|++ +.|.|
T Consensus 48 I~iGEnniiEEyA~i~n 64 (190)
T KOG4042|consen 48 IYIGENNIIEEYAVIRN 64 (190)
T ss_pred EEEccCchhhhHHHHHh
Confidence 36677777663 44444
No 263
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=92.40 E-value=0.92 Score=48.08 Aligned_cols=72 Identities=24% Similarity=0.437 Sum_probs=46.8
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCc--chhhHHHHHHHHh----------cCCC-EEEEEec-cCchHHHH
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGC--YRLIDIPMSNCIN----------SGIN-KIFVLTQ-FNSASLNR 157 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~--ypLId~~L~~l~~----------~Gi~-~I~Vv~~-~~~~~l~~ 157 (507)
..++.++++|||.||||. ..-||.+.|++.. ..++++..+.+.. .|.+ ..+|.|. .-.+.-.+
T Consensus 95 ~~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~ 171 (477)
T KOG2388|consen 95 EGKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLE 171 (477)
T ss_pred cCcceEEEeccCceeeec---cCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHh
Confidence 467899999999999998 5789999999843 1477777665432 1321 2255554 34555566
Q ss_pred HHHh-cccCC
Q 010554 158 HIAR-TYFGN 166 (507)
Q Consensus 158 ~l~~-~~~~~ 166 (507)
|+.. .||+.
T Consensus 172 ~f~~~~~FGl 181 (477)
T KOG2388|consen 172 YFESHKYFGL 181 (477)
T ss_pred HHhhcCCCCC
Confidence 6653 34543
No 264
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=91.33 E-value=0.41 Score=45.69 Aligned_cols=14 Identities=43% Similarity=0.408 Sum_probs=8.1
Q ss_pred EEEcCCCEeCCCcc
Q 010554 493 TIIMEKATIEDGMV 506 (507)
Q Consensus 493 ~vig~~~~i~~gt~ 506 (507)
+.||+|++|++|++
T Consensus 219 V~IGegavIaAGsv 232 (269)
T KOG4750|consen 219 VTIGEGAVIAAGSV 232 (269)
T ss_pred eeECCCcEEeccce
Confidence 44566666666654
No 265
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=90.63 E-value=5.2 Score=34.99 Aligned_cols=109 Identities=12% Similarity=0.150 Sum_probs=69.8
Q ss_pred ceeecCcchhhHHHHHHHHhc--CCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChH
Q 010554 119 AVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~--Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (507)
.+|..|+...|..+|+.+.+. ...+|+|+-....+...+.+. .+.. ....++++...+. .|.+
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~-~~~~-----~~~~i~~i~~~~n---------~g~~ 67 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILE-EYAE-----SDPNIRYIRNPEN---------LGFS 67 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHH-HHHC-----CSTTEEEEEHCCC---------SHHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccc-cccc-----ccccccccccccc---------cccc
Confidence 578888767889999988876 445777776555444444443 2211 0122666653332 3788
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcCCceEEEE
Q 010554 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISC 248 (507)
Q Consensus 197 ~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~a~~tl~~ 248 (507)
.++..+..... .+.++++..|.+...+ +..+++.+.+.+.++.+..
T Consensus 68 ~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 68 AARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp HHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred ccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 88888876654 4799999999999877 6888888888777654443
No 266
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=89.26 E-value=1.1 Score=41.71 Aligned_cols=33 Identities=39% Similarity=0.481 Sum_probs=24.4
Q ss_pred eeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 455 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
.++||++|-||.+++|.. | ++||+|+.|++|++
T Consensus 124 ~v~IG~~vwIG~~a~Ilp------------------G-V~IG~gavigagsV 156 (190)
T COG0110 124 PVTIGEDVWIGAGAVILP------------------G-VTIGEGAVIGAGSV 156 (190)
T ss_pred CeEECCCeEEcCccEECC------------------C-EEECCCcEEeeCCE
Confidence 477777777777777765 3 67788888877765
No 267
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=86.80 E-value=0.83 Score=48.53 Aligned_cols=18 Identities=6% Similarity=-0.032 Sum_probs=9.7
Q ss_pred ceEEcCCcEEccceEeee
Q 010554 406 DAIISHGCFLRECTVEHS 423 (507)
Q Consensus 406 ~siIg~gc~I~~~~I~~S 423 (507)
.+.+.+++.|-+|.++..
T Consensus 273 ~~~~~~~~~VinSil~~~ 290 (414)
T PF07959_consen 273 PSDSEASSCVINSILEGG 290 (414)
T ss_pred ccccCCCeeEEEeEecCC
Confidence 445555555555555443
No 268
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=85.71 E-value=0.98 Score=40.40 Aligned_cols=25 Identities=24% Similarity=0.614 Sum_probs=14.1
Q ss_pred CcCCCceec-ceeee-ceEEcCCcEEc
Q 010554 392 RFLPPTKID-NCRIK-DAIISHGCFLR 416 (507)
Q Consensus 392 ~~~~p~~i~-~~~I~-~siIg~gc~I~ 416 (507)
.+.|.+.+. .+.|+ +.+|++||++-
T Consensus 10 kIap~AvVCvEs~irGdvti~~gcVvH 36 (190)
T KOG4042|consen 10 KIAPSAVVCVESDIRGDVTIKEGCVVH 36 (190)
T ss_pred eecCceEEEEecccccceEecCCcEec
Confidence 344444443 34443 67778887764
No 269
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=81.77 E-value=2 Score=50.15 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=26.0
Q ss_pred eeecCCCcceeeCCCc-EEeeeEeCCCCEECCCcEEecC
Q 010554 436 SLLAEGKVPIGVGRNT-KIRNCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~-~I~nsIIg~na~Ig~~~~i~~~ 473 (507)
|++..+ +.+|+++ .|+||.|+.+.+||.+++|.+.
T Consensus 337 s~~~~~---~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv 372 (974)
T PRK13412 337 AVLSGK---LTAENATLWIENSHVGEGWKLASRSIITGV 372 (974)
T ss_pred eEecCC---cccCCCeEEEEeeEecCCeEEcCCcEEecc
Confidence 444666 7788874 4888888888888888888764
No 270
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=81.03 E-value=21 Score=33.81 Aligned_cols=106 Identities=10% Similarity=0.108 Sum_probs=65.4
Q ss_pred ceeecCcchhhHHHHHHHHhcCC----CEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccC
Q 010554 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~Gi----~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (507)
++|..|..+.|..+|+.+.+... -+|+|+-+...+...+.+.+ +... . ..+.++.... .|
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~-~~~~---~--~~v~~i~~~~----------~~ 68 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQE-YAAK---D--PRIRLIDNPK----------RI 68 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHH-HHhc---C--CeEEEEeCCC----------CC
Confidence 56777776778888888877644 37777766655555555532 2111 1 1255553211 25
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcCCceEE
Q 010554 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITI 246 (507)
Q Consensus 195 ta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~a~~tl 246 (507)
-+.|+..+....+ .+.++++.+|.+...+ +..+++.+.+.+.++..
T Consensus 69 ~~~a~N~g~~~a~------~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~ 115 (249)
T cd02525 69 QSAGLNIGIRNSR------GDIIIRVDAHAVYPKDYILELVEALKRTGADNVG 115 (249)
T ss_pred chHHHHHHHHHhC------CCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEe
Confidence 5667776655442 5789999999988766 57777766666555433
No 271
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=80.33 E-value=24 Score=31.76 Aligned_cols=108 Identities=14% Similarity=0.068 Sum_probs=64.8
Q ss_pred ceeecCcchhhHHHHHHHHhc----CCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccC
Q 010554 119 AVPVAGCYRLIDIPMSNCINS----GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~----Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (507)
.+|..+....|..+|+.+.+. ...+|+|+-+...+...+.+. .+.. ++. .+.++...+. .|
T Consensus 2 ii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~-~~~~---~~~--~~~~~~~~~n---------~G 66 (185)
T cd04179 2 VIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIAR-ELAA---RVP--RVRVIRLSRN---------FG 66 (185)
T ss_pred eecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHH-HHHH---hCC--CeEEEEccCC---------CC
Confidence 356666645677778888776 356777776555444444342 2211 111 1344433332 48
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcCCceEEE
Q 010554 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (507)
Q Consensus 195 ta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~a~~tl~ 247 (507)
.+.|+..+..... .+.++++.+|.....+ +..++......+.++.+.
T Consensus 67 ~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 67 KGAAVRAGFKAAR------GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred ccHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 8888887765543 4789999999877666 577777655666655433
No 272
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=79.61 E-value=40 Score=29.33 Aligned_cols=99 Identities=7% Similarity=0.050 Sum_probs=64.0
Q ss_pred ceeecCcchhhHHHHHHHHhcC--CCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChH
Q 010554 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~G--i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (507)
++|.-|+..++..+++.+.+.- ..+|+|+-....+...+.+.+.+ . .+.++.... ..|.+
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~-~--------~~~~~~~~~---------~~g~~ 63 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELF-P--------EVRLIRNGE---------NLGFG 63 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhC-C--------CeEEEecCC---------CcChH
Confidence 4677777678999999998763 45777777655555555554221 1 245543221 14888
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcC
Q 010554 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRD 241 (507)
Q Consensus 197 ~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~ 241 (507)
.|+..+....+ .+.++++..|..+..+ +..+++.+.+..
T Consensus 64 ~a~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 64 AGNNQGIREAK------GDYVLLLNPDTVVEPGALLELLDAAEQDP 103 (166)
T ss_pred HHhhHHHhhCC------CCEEEEECCCcEECccHHHHHHHHHHhCC
Confidence 88888766553 5788999999988766 566666555443
No 273
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=79.00 E-value=34 Score=32.22 Aligned_cols=97 Identities=13% Similarity=0.182 Sum_probs=63.8
Q ss_pred ceeecCcc-hhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChHH
Q 010554 119 AVPVAGCY-RLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTAD 197 (507)
Q Consensus 119 LlPI~g~y-pLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~ 197 (507)
++|.-|.. ..|..+|+.+.+....+|+|+.....+...+.+.+.. .. ..+.++.... .|-+.
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~-----~~--~~~~v~~~~~----------~g~~~ 67 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTV-----KY--GGIFVITVPH----------PGKRR 67 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhc-----cC--CcEEEEecCC----------CChHH
Confidence 56777775 7889999999876566888887766666555553211 11 1244443211 37778
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHH
Q 010554 198 AVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV 238 (507)
Q Consensus 198 AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~ 238 (507)
|+..+.... ..+.++++.+|.....+ +..+++.+.
T Consensus 68 a~n~g~~~a------~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 68 ALAEGIRHV------TTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHHh------CCCEEEEECCCceeChhHHHHHHHhcc
Confidence 887665443 25889999999999877 566666655
No 274
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=78.98 E-value=39 Score=32.31 Aligned_cols=107 Identities=17% Similarity=0.143 Sum_probs=64.1
Q ss_pred CCccCCCc--cceeecCcchhhHHHHHHHHhcCC----CEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccC
Q 010554 110 PLTLRAAT--PAVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQT 183 (507)
Q Consensus 110 PLT~~~PK--~LlPI~g~ypLId~~L~~l~~~Gi----~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~ 183 (507)
+.....|+ .++|..|....|...|+.+..... -+|+|+.....+...+.+. .+.. . .+.++.....
T Consensus 23 ~~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~---~----~v~~i~~~~~ 94 (251)
T cd06439 23 PDPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAR-EYAD---K----GVKLLRFPER 94 (251)
T ss_pred CCCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHH-HHhh---C----cEEEEEcCCC
Confidence 33444555 567777775667777777766432 2577776555444444442 2211 0 1455432221
Q ss_pred CCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHH
Q 010554 184 PGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (507)
Q Consensus 184 ~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~ 239 (507)
.|-+.++..+..... .+.++++.+|.+...+ +.++++...+
T Consensus 95 ---------~g~~~a~n~gi~~a~------~d~i~~lD~D~~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 95 ---------RGKAAALNRALALAT------GEIVVFTDANALLDPDALRLLVRHFAD 136 (251)
T ss_pred ---------CChHHHHHHHHHHcC------CCEEEEEccccCcCHHHHHHHHHHhcC
Confidence 478888887765543 4889999999988766 5677766543
No 275
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=72.69 E-value=55 Score=28.25 Aligned_cols=102 Identities=13% Similarity=0.090 Sum_probs=60.9
Q ss_pred ceeecCcchhhHHHHHHHHhcC--CCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChH
Q 010554 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~G--i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (507)
.+|.-|....|..+|+.+.+.. ..+|+|+-....+...+.+.+ +... .. ..+.++...+. .|.+
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~-~~~~---~~-~~~~~~~~~~~---------~g~~ 67 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEE-LAAL---YI-RRVLVVRDKEN---------GGKA 67 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHH-Hhcc---cc-ceEEEEEeccc---------CCch
Confidence 4677777678888899988864 447777766555444444432 2111 00 11223322221 4888
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHc
Q 010554 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDR 240 (507)
Q Consensus 197 ~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~ 240 (507)
.++..+..... .+.++++.+|.+...+ +..++..+...
T Consensus 68 ~~~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 68 GALNAGLRHAK------GDIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred HHHHHHHHhcC------CCEEEEECCCCCcChHHHHHHHHHhccC
Confidence 88887765542 5789999999988766 45554555443
No 276
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=71.92 E-value=62 Score=32.21 Aligned_cols=105 Identities=10% Similarity=0.086 Sum_probs=64.0
Q ss_pred ceeecCcc-hhhHHHHHHHHhcCC----CEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCccc
Q 010554 119 AVPVAGCY-RLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (507)
Q Consensus 119 LlPI~g~y-pLId~~L~~l~~~Gi----~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~ 193 (507)
.+|.-|.. ..|..+|+.+.+.-- .+|+||-+...+...+.+.+.+... .. ..++++..... .
T Consensus 3 IIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~--~~--~~v~vi~~~~n---------~ 69 (299)
T cd02510 3 IIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKK--YL--PKVKVLRLKKR---------E 69 (299)
T ss_pred EEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhh--cC--CcEEEEEcCCC---------C
Confidence 46777875 588888888876421 3787776655443333332211000 11 12666643322 4
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcCC
Q 010554 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDA 242 (507)
Q Consensus 194 Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~a 242 (507)
|-+.|...+..... .+.++++++|.....+ +..+++.......
T Consensus 70 G~~~a~N~g~~~A~------gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 70 GLIRARIAGARAAT------GDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred CHHHHHHHHHHHcc------CCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 78888777765432 5889999999988766 5777777665543
No 277
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=71.70 E-value=52 Score=30.04 Aligned_cols=104 Identities=14% Similarity=0.181 Sum_probs=59.2
Q ss_pred ceeecCcc-hhhHHHHHHHHhcCCC--EEEEEeccCch-HHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccC
Q 010554 119 AVPVAGCY-RLIDIPMSNCINSGIN--KIFVLTQFNSA-SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (507)
Q Consensus 119 LlPI~g~y-pLId~~L~~l~~~Gi~--~I~Vv~~~~~~-~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (507)
.+|.-|.. ..+..+|+.+.+.-.. +|+|+-....+ .+...+ +.+.... ..+.++..... .|
T Consensus 6 ii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~-~~~~~~~-----~~~~~~~~~~~---------~g 70 (202)
T cd04184 6 VMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVL-KKYAAQD-----PRIKVVFREEN---------GG 70 (202)
T ss_pred EEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHH-HHHHhcC-----CCEEEEEcccC---------CC
Confidence 46767765 6677788888765332 66666543322 333222 2221111 12444432221 47
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHH-HHcCCc
Q 010554 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSH-VDRDAD 243 (507)
Q Consensus 195 ta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h-~~~~a~ 243 (507)
.+.++..+..... .+.++++..|.....+ +..+++.+ ...+.+
T Consensus 71 ~~~a~n~g~~~a~------~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~ 115 (202)
T cd04184 71 ISAATNSALELAT------GEFVALLDHDDELAPHALYEVVKALNEHPDAD 115 (202)
T ss_pred HHHHHHHHHHhhc------CCEEEEECCCCcCChHHHHHHHHHHHhCCCCC
Confidence 7888877765442 4788899999988776 57777776 334443
No 278
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=71.45 E-value=55 Score=30.44 Aligned_cols=107 Identities=10% Similarity=0.078 Sum_probs=62.5
Q ss_pred ceeecCcchhhHHHHHHHHhcC---CCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccCh
Q 010554 119 AVPVAGCYRLIDIPMSNCINSG---INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~G---i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gt 195 (507)
.+|.-|....|..+|+.+.+.- --+|+||-....+...+.+. .+... . ..+.++..... .|-
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~-~~~~~---~--~~i~~~~~~~n---------~G~ 66 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVR-ELAKE---Y--PRVRLIVRPGK---------RGL 66 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHH-HHHHh---C--CceEEEecCCC---------CCh
Confidence 4677777566778888877643 24676665544343333332 22111 1 12444432221 588
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcCCceEE
Q 010554 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITI 246 (507)
Q Consensus 196 a~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~a~~tl 246 (507)
+.|+..+..... .+.++++.+|.....+ +..+++.....+.++..
T Consensus 67 ~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 112 (224)
T cd06442 67 GSAYIEGFKAAR------GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVI 112 (224)
T ss_pred HHHHHHHHHHcC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 888887765543 4788899999887665 56777765555555433
No 279
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=71.40 E-value=48 Score=30.85 Aligned_cols=109 Identities=12% Similarity=0.095 Sum_probs=62.8
Q ss_pred ceeecCcchhhHHHHHHHHhc------CCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcc
Q 010554 119 AVPVAGCYRLIDIPMSNCINS------GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF 192 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~------Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~ 192 (507)
.+|.-|....|...|+.+.+. .--+|+|+-+...+...+.+. .+.. +++. .+.++.....
T Consensus 2 iip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~-~~~~---~~~~-~i~~i~~~~n--------- 67 (211)
T cd04188 2 VIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVAR-KLAR---KNPA-LIRVLTLPKN--------- 67 (211)
T ss_pred EEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHH-HHHH---hCCC-cEEEEEcccC---------
Confidence 467766545666677776653 234677765544433333332 2211 1111 1344432221
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcCCceEEE
Q 010554 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (507)
Q Consensus 193 ~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~a~~tl~ 247 (507)
.|-+.|+..+..... .+.++++.+|..+..+ +..+++...+.+.++.+.
T Consensus 68 ~G~~~a~~~g~~~a~------gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 68 RGKGGAVRAGMLAAR------GDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred CCcHHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 588999988765543 4889999999988765 677777755666665444
No 280
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=70.61 E-value=68 Score=28.87 Aligned_cols=97 Identities=9% Similarity=0.106 Sum_probs=58.2
Q ss_pred ceeecCcchhhHHHHHHHHhcCCC--EEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChH
Q 010554 119 AVPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~Gi~--~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (507)
.+|.-|....|..+|+.+.+.... +|+|+-+...+...+.+. .+.. . .+.+.. .+. .|.+
T Consensus 3 vi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~-~~~~---~----~~~~~~-~~~---------~g~~ 64 (202)
T cd06433 3 ITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIK-KYED---K----ITYWIS-EPD---------KGIY 64 (202)
T ss_pred EEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHH-HhHh---h----cEEEEe-cCC---------cCHH
Confidence 466767656888899998876554 566665444444444443 2211 0 123332 111 4888
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHH
Q 010554 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (507)
Q Consensus 197 ~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~ 239 (507)
.++..+....+ .+.++++.+|.....+ +..++.....
T Consensus 65 ~a~n~~~~~a~------~~~v~~ld~D~~~~~~~~~~~~~~~~~ 102 (202)
T cd06433 65 DAMNKGIALAT------GDIIGFLNSDDTLLPGALLAVVAAFAE 102 (202)
T ss_pred HHHHHHHHHcC------CCEEEEeCCCcccCchHHHHHHHHHHh
Confidence 88887765443 4789999999977655 6777744433
No 281
>PRK10073 putative glycosyl transferase; Provisional
Probab=70.55 E-value=41 Score=34.42 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=64.5
Q ss_pred cceeecCcchhhHHHHHHHHhcCCC--EEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccCh
Q 010554 118 PAVPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (507)
Q Consensus 118 ~LlPI~g~ypLId~~L~~l~~~Gi~--~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gt 195 (507)
..+|+-|....|..+|+.+.+.-.. +|+|+-....+.-.+.+ +.|... ...+.++. +.. .|.
T Consensus 10 VIIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~-~~~~~~-----~~~i~vi~--~~n--------~G~ 73 (328)
T PRK10073 10 IIIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIA-KHYAEN-----YPHVRLLH--QAN--------AGV 73 (328)
T ss_pred EEEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHH-HHHHhh-----CCCEEEEE--CCC--------CCh
Confidence 3567777657889999999876443 56555433332222222 222111 11256653 211 488
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcCCceEEE
Q 010554 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (507)
Q Consensus 196 a~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~a~~tl~ 247 (507)
+.|...+..... .+.++++.+|-....+ +..+++...+.+.++.+.
T Consensus 74 ~~arN~gl~~a~------g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~ 120 (328)
T PRK10073 74 SVARNTGLAVAT------GKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQC 120 (328)
T ss_pred HHHHHHHHHhCC------CCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEE
Confidence 888777665442 5889999999988766 567777766666776443
No 282
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=70.31 E-value=83 Score=30.03 Aligned_cols=109 Identities=11% Similarity=-0.025 Sum_probs=63.0
Q ss_pred ceeecCcchhhHHHHHHHHhcCC----CEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccC
Q 010554 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~Gi----~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (507)
++|.-|....|..+|+.+.+... -+|+||.....+.-.+.+. .+ ..... ..+.++.... ..|
T Consensus 6 iIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~-~~-~~~~~---~~i~~~~~~~---------~~G 71 (241)
T cd06427 6 LVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAAR-AL-RLPSI---FRVVVVPPSQ---------PRT 71 (241)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHH-Hh-ccCCC---eeEEEecCCC---------CCc
Confidence 56777765678888888877532 1566665544443333332 22 11001 1133322111 147
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcCCceEEE
Q 010554 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (507)
Q Consensus 195 ta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~a~~tl~ 247 (507)
-+.|+..+.... ..+.++++.+|.....+ +.+++..+.+.+.++.++
T Consensus 72 ~~~a~n~g~~~a------~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 72 KPKACNYALAFA------RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred hHHHHHHHHHhc------CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 888888876543 25789999999988777 467777776544554443
No 283
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=69.44 E-value=77 Score=28.89 Aligned_cols=99 Identities=11% Similarity=0.113 Sum_probs=58.8
Q ss_pred ceeecCcc--hhhHHHHHHHHhcC--CCEEEEEeccC-chHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCccc
Q 010554 119 AVPVAGCY--RLIDIPMSNCINSG--INKIFVLTQFN-SASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (507)
Q Consensus 119 LlPI~g~y--pLId~~L~~l~~~G--i~~I~Vv~~~~-~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~ 193 (507)
++|+.|.. ..|..+|+.+.+.- -.+|+|+-... .+...+.+ +.|.. ++. ++++...+. .
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~-~~~~~---~~~---i~~i~~~~n---------~ 66 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVL-EEFKR---KLP---LKVVPLEKN---------R 66 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHH-HHHHh---cCC---eEEEEcCcc---------c
Confidence 57887762 27889999998754 25666665433 33333323 22211 111 455532221 4
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHH
Q 010554 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (507)
Q Consensus 194 Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~ 239 (507)
|.+.|...+.... ..+.++++.+|.+...+ +..+++...+
T Consensus 67 G~~~a~N~g~~~a------~gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 67 GLGKALNEGLKHC------TYDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred cHHHHHHHHHHhc------CCCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 8888887776543 25789999999988766 4666666543
No 284
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=67.36 E-value=45 Score=32.02 Aligned_cols=49 Identities=20% Similarity=0.094 Sum_probs=35.0
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcCCceEEE
Q 010554 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (507)
Q Consensus 193 ~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~a~~tl~ 247 (507)
.|-+.|+..+..... .+.++++.+|...+.+ +.++++...+.++++...
T Consensus 79 ~G~~~a~n~g~~~a~------g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 79 LGLGTAYIHGLKHAS------GDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred CCHHHHHHHHHHHcC------CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 488888877754432 5789999999988665 577787766667765443
No 285
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=65.13 E-value=93 Score=28.84 Aligned_cols=106 Identities=5% Similarity=0.029 Sum_probs=60.6
Q ss_pred ceeecCcchhhHHHHHHHHhcCC----CEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccC
Q 010554 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~Gi----~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (507)
++|..|....|..+|+.+....- -+|+|+-....+...+.+. +.. ......+.++.... . ...|
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~--~~~---~~~~~~v~~~~~~~-~------~~~g 69 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE--FAA---AKPNFQLKILNNSR-V------SISG 69 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH--HHH---hCCCcceEEeeccC-c------ccch
Confidence 57888876678888888866522 3566665544433333332 100 01112255554322 1 0146
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcCC
Q 010554 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDA 242 (507)
Q Consensus 195 ta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~a 242 (507)
-+.++..+.... ..+.++++.+|.+...+ +..+++.+.+.+.
T Consensus 70 ~~~a~n~g~~~~------~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 70 KKNALTTAIKAA------KGDWIVTTDADCVVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred hHHHHHHHHHHh------cCCEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence 677776665433 25789999999988776 4777776655544
No 286
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=60.53 E-value=1.3e+02 Score=27.17 Aligned_cols=106 Identities=12% Similarity=0.078 Sum_probs=62.0
Q ss_pred ceeecCcchhhHHHHHHHHhcCC----CEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccC
Q 010554 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~Gi----~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (507)
++|..|....|.-+|+.+.+... -+|+|+.....+...+.+. .+ +. .+.+.. ... -.|
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~-~~-------~~-~~~~~~-~~~--------~~g 63 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVAR-AA-------GA-TVLERH-DPE--------RRG 63 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHH-Hc-------CC-eEEEeC-CCC--------CCC
Confidence 57888876788888888876543 3576776555444433332 21 11 122211 111 148
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCH-HHHHHHHHHcCCce
Q 010554 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRDADI 244 (507)
Q Consensus 195 ta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl-~~ll~~h~~~~a~~ 244 (507)
.+.|+..+...... .....+.++++.+|.....++ ..+++.+. .+.++
T Consensus 64 k~~aln~g~~~a~~-~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~-~~~~~ 112 (183)
T cd06438 64 KGYALDFGFRHLLN-LADDPDAVVVFDADNLVDPNALEELNARFA-AGARV 112 (183)
T ss_pred HHHHHHHHHHHHHh-cCCCCCEEEEEcCCCCCChhHHHHHHHHHh-hCCCe
Confidence 88888887665520 012357899999999998775 66666554 34443
No 287
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=58.60 E-value=93 Score=33.18 Aligned_cols=101 Identities=13% Similarity=0.078 Sum_probs=60.2
Q ss_pred cceeecCcchhhHHHHHHHHhcCC--CEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccCh
Q 010554 118 PAVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (507)
Q Consensus 118 ~LlPI~g~ypLId~~L~~l~~~Gi--~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gt 195 (507)
-++|..|...-|..+++.+.+..- -+|+|+.....+...+.+. .+.. +. ..++++...+. .|-
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~-~~~~---~~--~~v~vv~~~~n---------~Gk 143 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLD-ALLA---ED--PRLRVIHLAHN---------QGK 143 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHH-HHHH---hC--CCEEEEEeCCC---------CCH
Confidence 466777765667788888776532 2677776544443333332 1111 11 12555543221 488
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHH
Q 010554 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (507)
Q Consensus 196 a~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~ 239 (507)
+.|+..+.... ..+.++++.+|.+.+.| +..+++.+.+
T Consensus 144 a~AlN~gl~~a------~~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 144 AIALRMGAAAA------RSEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred HHHHHHHHHhC------CCCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 88888775443 35889999999998877 4666665544
No 288
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=56.33 E-value=1.1e+02 Score=27.44 Aligned_cols=106 Identities=10% Similarity=-0.035 Sum_probs=58.2
Q ss_pred ceeecCcchhhHHHHHHHHhc-----CCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCccc
Q 010554 119 AVPVAGCYRLIDIPMSNCINS-----GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~-----Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~ 193 (507)
++|.-|....|...++.+.+. ..-+|+|+-+...+...+.+. .+... . ..+.++...+. .
T Consensus 2 iIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~---~--~~i~~i~~~~n---------~ 66 (181)
T cd04187 2 VVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILR-ELAAR---D--PRVKVIRLSRN---------F 66 (181)
T ss_pred EEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHH-HHHhh---C--CCEEEEEecCC---------C
Confidence 356666634455555555432 223677776554443333332 22111 1 12555543221 4
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcCCceEE
Q 010554 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITI 246 (507)
Q Consensus 194 Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~a~~tl 246 (507)
|.+.|+..+..... .+.++++.+|.....+ +..+++. .+.+.++.+
T Consensus 67 G~~~a~n~g~~~a~------~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~ 113 (181)
T cd04187 67 GQQAALLAGLDHAR------GDAVITMDADLQDPPELIPEMLAK-WEEGYDVVY 113 (181)
T ss_pred CcHHHHHHHHHhcC------CCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEE
Confidence 88888887765442 4789999999988766 5677766 444555433
No 289
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=56.02 E-value=1.7e+02 Score=31.10 Aligned_cols=102 Identities=12% Similarity=0.067 Sum_probs=59.4
Q ss_pred cceeecCcchhhHHHHHHHHhcCCC----EEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCccc
Q 010554 118 PAVPVAGCYRLIDIPMSNCINSGIN----KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (507)
Q Consensus 118 ~LlPI~g~ypLId~~L~~l~~~Gi~----~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~ 193 (507)
.++|.-|....|..+++.+.+.... +|+|+-+...+...+.+.+ +.. .+. .+.+...... .
T Consensus 53 VIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~-~~~---~~~--~v~v~~~~~~---------~ 117 (439)
T TIGR03111 53 IIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCR-AQN---EFP--GLSLRYMNSD---------Q 117 (439)
T ss_pred EEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHH-HHH---hCC--CeEEEEeCCC---------C
Confidence 3556666657788888888776432 4666654444433322221 100 111 1333321221 4
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHc
Q 010554 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDR 240 (507)
Q Consensus 194 Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~ 240 (507)
|-++|+..+..... .+.++++.+|.+.+.| +.++++.+.+.
T Consensus 118 Gka~AlN~gl~~s~------g~~v~~~DaD~~~~~d~L~~l~~~f~~~ 159 (439)
T TIGR03111 118 GKAKALNAAIYNSI------GKYIIHIDSDGKLHKDAIKNMVTRFENN 159 (439)
T ss_pred CHHHHHHHHHHHcc------CCEEEEECCCCCcChHHHHHHHHHHHhC
Confidence 88999988865442 5789999999998777 57777766543
No 290
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=54.18 E-value=2.6e+02 Score=29.06 Aligned_cols=114 Identities=16% Similarity=0.226 Sum_probs=64.2
Q ss_pred ceeecCcchhhHHHHHHHHhcCC---CEEEEEeccCchH---HHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcc
Q 010554 119 AVPVAGCYRLIDIPMSNCINSGI---NKIFVLTQFNSAS---LNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF 192 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~Gi---~~I~Vv~~~~~~~---l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~ 192 (507)
.+|..|....|...|+.+.+... -+|+|+-+...+. +.+.+.+.+ .. ...++++.....+ . .|
T Consensus 45 IIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~-~~-----~~~i~vi~~~~~~--~--g~- 113 (384)
T TIGR03469 45 VVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAY-GR-----GDRLTVVSGQPLP--P--GW- 113 (384)
T ss_pred EEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhc-CC-----CCcEEEecCCCCC--C--CC-
Confidence 45666655778888888877533 3677776554433 333332221 00 0125666432211 1 12
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcCCce
Q 010554 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADI 244 (507)
Q Consensus 193 ~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~a~~ 244 (507)
.|-+.|+.+......+. ....+.++++.+|.....+ +.++++...+.+.++
T Consensus 114 ~Gk~~A~n~g~~~A~~~-~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 114 SGKLWAVSQGIAAARTL-APPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred cchHHHHHHHHHHHhcc-CCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 36667777765444310 0114789999999988766 588887777666554
No 291
>PRK10018 putative glycosyl transferase; Provisional
Probab=50.71 E-value=2.7e+02 Score=27.76 Aligned_cols=98 Identities=9% Similarity=0.144 Sum_probs=58.2
Q ss_pred ceeecCcchhhHHHHHHHHhcCCC--EEEEEeccCc--hHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccC
Q 010554 119 AVPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNS--ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~Gi~--~I~Vv~~~~~--~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (507)
.+|..|....|..+|+.+.+.-.. +|+|+-.... +.+.+++. .+ ....+.++...+. .|
T Consensus 10 Iip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~-~~-------~~~ri~~i~~~~n---------~G 72 (279)
T PRK10018 10 YMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVT-AL-------NDPRITYIHNDIN---------SG 72 (279)
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHH-Hc-------CCCCEEEEECCCC---------CC
Confidence 456677756778888888776443 5655543222 22333332 21 1123666543221 48
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHH
Q 010554 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (507)
Q Consensus 195 ta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~ 239 (507)
.+.|...+.... ..+.++++.+|.+...+ +..+++...+
T Consensus 73 ~~~a~N~gi~~a------~g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 73 ACAVRNQAIMLA------QGEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HHHHHHHHHHHc------CCCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 888887766543 25889999999988766 5667765443
No 292
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=49.92 E-value=1.9e+02 Score=27.19 Aligned_cols=102 Identities=12% Similarity=0.103 Sum_probs=57.4
Q ss_pred ceeecCcc-hhhHHHHHHHHhcCC--CEEEEEeccCch-HHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccC
Q 010554 119 AVPVAGCY-RLIDIPMSNCINSGI--NKIFVLTQFNSA-SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (507)
Q Consensus 119 LlPI~g~y-pLId~~L~~l~~~Gi--~~I~Vv~~~~~~-~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (507)
++|.-|.. .+|...|+.+.+... -+|+|+-+...+ ...+.+. .+.. +.+ ..+.++...+. .|
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~-~~~~---~~~-~~i~~i~~~~~---------~G 68 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVE-AHCA---QLG-ERFRFFHVEPL---------PG 68 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHH-HHHH---HhC-CcEEEEEcCCC---------CC
Confidence 57888874 378889999987653 367666644332 2211111 1100 011 12444433222 24
Q ss_pred -hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHH
Q 010554 195 -TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV 238 (507)
Q Consensus 195 -ta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~ 238 (507)
.++|+..+..... ...+.++++..|.+...+ +..+++...
T Consensus 69 ~~~~a~n~g~~~a~----~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 69 AKAGALNYALERTA----PDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred CchHHHHHHHHhcC----CCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 4777777765442 124789999999988776 577776654
No 293
>PRK11204 N-glycosyltransferase; Provisional
Probab=49.87 E-value=2.1e+02 Score=29.94 Aligned_cols=100 Identities=14% Similarity=0.147 Sum_probs=58.2
Q ss_pred ceeecCcchhhHHHHHHHHhcCC--CEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChH
Q 010554 119 AVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~Gi--~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (507)
++|.-|....|..+++.+.+..- -+|+|+-....+...+.+. .+.. ++ ..++++...+. .|-+
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~-~~~~---~~--~~v~~i~~~~n---------~Gka 123 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILD-RLAA---QI--PRLRVIHLAEN---------QGKA 123 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHH-HHHH---hC--CcEEEEEcCCC---------CCHH
Confidence 34555544567777877776532 3677766544433333332 1101 11 12555542221 4888
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHH
Q 010554 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (507)
Q Consensus 197 ~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~ 239 (507)
+|+..+.... ..+.++++.+|.+...| +..+++.+.+
T Consensus 124 ~aln~g~~~a------~~d~i~~lDaD~~~~~d~L~~l~~~~~~ 161 (420)
T PRK11204 124 NALNTGAAAA------RSEYLVCIDGDALLDPDAAAYMVEHFLH 161 (420)
T ss_pred HHHHHHHHHc------CCCEEEEECCCCCCChhHHHHHHHHHHh
Confidence 8988876543 25889999999988777 5777776644
No 294
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=49.11 E-value=2.2e+02 Score=26.98 Aligned_cols=94 Identities=14% Similarity=0.073 Sum_probs=57.4
Q ss_pred ceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChHHH
Q 010554 119 AVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADA 198 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~A 198 (507)
++|.-|....|..+|+.+... .++|+|+-+...+...+-+. .+ + ++++.. . ..|-+.+
T Consensus 5 ii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~-~~-------~---~~v~~~-~---------~~g~~~~ 62 (229)
T cd02511 5 VIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAK-EY-------G---AKVYQR-W---------WDGFGAQ 62 (229)
T ss_pred EEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHH-Hc-------C---CEEEEC-C---------CCChHHH
Confidence 567777656788888887654 36888887665544433332 21 2 344432 1 1477877
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHc
Q 010554 199 VRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240 (507)
Q Consensus 199 L~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~ 240 (507)
...+..... .+.++++.+|.+...++.+.+....+.
T Consensus 63 ~n~~~~~a~------~d~vl~lDaD~~~~~~~~~~l~~~~~~ 98 (229)
T cd02511 63 RNFALELAT------NDWVLSLDADERLTPELADEILALLAT 98 (229)
T ss_pred HHHHHHhCC------CCEEEEEeCCcCcCHHHHHHHHHHHhC
Confidence 776665443 468999999998877754444434333
No 295
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=49.06 E-value=1.9e+02 Score=26.39 Aligned_cols=103 Identities=9% Similarity=0.027 Sum_probs=52.0
Q ss_pred ceeecCcchhhHHHHHHHHhcC--CCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChH
Q 010554 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~G--i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (507)
++|+.|.-+-|...|+.+.+.- --+|+||.....+.-.+.+. .+.. ++....+.++......+ ..+.+
T Consensus 6 iip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~-~~~~---~~~~~~~~~~~~~~~~g------~~~~~ 75 (196)
T cd02520 6 LKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVR-KLIA---KYPNVDARLLIGGEKVG------INPKV 75 (196)
T ss_pred EEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHH-HHHH---HCCCCcEEEEecCCcCC------CCHhH
Confidence 5677766556778888887642 23677666544332222221 1100 11111244443322211 01233
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHH
Q 010554 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSH 237 (507)
Q Consensus 197 ~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h 237 (507)
.++..+.... ..+.++++.+|.....+ +..+++..
T Consensus 76 ~~~n~g~~~a------~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 76 NNLIKGYEEA------RYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred HHHHHHHHhC------CCCEEEEECCCceEChhHHHHHHHHh
Confidence 4444443322 25788999999988766 46666543
No 296
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=48.16 E-value=2e+02 Score=26.17 Aligned_cols=98 Identities=7% Similarity=0.089 Sum_probs=55.8
Q ss_pred ceeecCcchhhHHHHHHHHhcCC--CEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChH
Q 010554 119 AVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~Gi--~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (507)
++|.-|....|...|+.+.+... -+|+|+-....+...+.+. .+.. +++ ..+.++...+. .|.+
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~-~~~~---~~~-~~~~~~~~~~~---------~G~~ 68 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIK-EYID---KDP-FIIILIRNGKN---------LGVA 68 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHH-HHHh---cCC-ceEEEEeCCCC---------ccHH
Confidence 57888875688888888877533 2566665433333222222 2211 111 11333322221 3777
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHH
Q 010554 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQS 236 (507)
Q Consensus 197 ~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~ 236 (507)
.++..+.... ..+.++++..|.++..+ +..+++.
T Consensus 69 ~~~n~g~~~~------~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 69 RNFESLLQAA------DGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred HHHHHHHHhC------CCCEEEEECCCcccChhHHHHHHHH
Confidence 7777664322 35789999999888766 6777776
No 297
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=47.78 E-value=1.8e+02 Score=30.09 Aligned_cols=105 Identities=11% Similarity=0.121 Sum_probs=58.0
Q ss_pred cceeecCcchhhHHHHHHHHhcCC--CEEEEEeccCch---HHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcc
Q 010554 118 PAVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSA---SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF 192 (507)
Q Consensus 118 ~LlPI~g~ypLId~~L~~l~~~Gi--~~I~Vv~~~~~~---~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~ 192 (507)
-++|+.|..+.|...|+.+.++.- -+|+|+.....+ .+.+.+.+.+ ....++++...+..+ .
T Consensus 45 ViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~-------p~~~i~~v~~~~~~G------~ 111 (373)
T TIGR03472 45 VLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADF-------PDADIDLVIDARRHG------P 111 (373)
T ss_pred EEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhC-------CCCceEEEECCCCCC------C
Confidence 366777776788888888877643 367665544333 2333333222 222255553322211 1
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCH-HHHHHHHHHcC
Q 010554 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRD 241 (507)
Q Consensus 193 ~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl-~~ll~~h~~~~ 241 (507)
.+-..++.++. +. ...|.++++.+|.....|+ +.++....+.+
T Consensus 112 ~~K~~~l~~~~---~~---a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~ 155 (373)
T TIGR03472 112 NRKVSNLINML---PH---ARHDILVIADSDISVGPDYLRQVVAPLADPD 155 (373)
T ss_pred ChHHHHHHHHH---Hh---ccCCEEEEECCCCCcChhHHHHHHHHhcCCC
Confidence 23344554442 22 2358899999999887774 66666654433
No 298
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=47.56 E-value=2.3e+02 Score=26.08 Aligned_cols=95 Identities=12% Similarity=0.025 Sum_probs=55.5
Q ss_pred ceeecCcchhhHHHHHHHHhcC--CCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChH
Q 010554 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~G--i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (507)
++|+-|..+.|...|+.+.+.- ..+|+|+-+...+...+.+.+ . .+.++.. . .|-+
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~--------~---~~~~~~~--~---------~g~~ 61 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS--------A---GVVVISS--P---------KGRA 61 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc--------C---CeEEEeC--C---------cCHH
Confidence 5677777567888888887653 246666654443434344431 1 1333321 1 3667
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCH-HHHHHHHHHcC
Q 010554 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRD 241 (507)
Q Consensus 197 ~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl-~~ll~~h~~~~ 241 (507)
.++..+..... .+.++++..|.....+. ..++..+...+
T Consensus 62 ~a~n~g~~~a~------~~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 62 RQMNAGAAAAR------GDWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred HHHHHHHHhcc------CCEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 77766654432 57899999999887664 55554444443
No 299
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=47.54 E-value=2.4e+02 Score=26.22 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=57.5
Q ss_pred ceeecCcc-hhhHHHHHHHHhcCCC----EEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCccc
Q 010554 119 AVPVAGCY-RLIDIPMSNCINSGIN----KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (507)
Q Consensus 119 LlPI~g~y-pLId~~L~~l~~~Gi~----~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~ 193 (507)
.+|..|.. .++...|+.+.+.... +|+|+-+...+...+.+. .+ .. +. .+.++...... .
T Consensus 6 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~-~~-~~--~~---~~~~~~~~~~~--------~ 70 (234)
T cd06421 6 FIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAA-EL-GV--EY---GYRYLTRPDNR--------H 70 (234)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHH-Hh-hc--cc---CceEEEeCCCC--------C
Confidence 56777752 3678888888876443 677776665555544443 22 11 11 13333222111 1
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCH-HHHHHHHHH
Q 010554 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVD 239 (507)
Q Consensus 194 Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl-~~ll~~h~~ 239 (507)
+-++++..+.... ..+.++++..|.+.+.+. ..+++...+
T Consensus 71 ~~~~~~n~~~~~a------~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 71 AKAGNLNNALAHT------TGDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred CcHHHHHHHHHhC------CCCEEEEEccccCcCccHHHHHHHHHhc
Confidence 3455666555433 258899999999888774 666665544
No 300
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=46.46 E-value=1.8e+02 Score=25.80 Aligned_cols=100 Identities=10% Similarity=0.082 Sum_probs=55.5
Q ss_pred ceeecCcchhhHHHHHHHHhc--CCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChH
Q 010554 119 AVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~--Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (507)
++|.-|....+..+|+.+.+. ...+|+|+-....+...+.+. .+.. ......+.+....+ . .|.+
T Consensus 2 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~-~~~~---~~~~~~~~~~~~~~-------~--~~~~ 68 (182)
T cd06420 2 IITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIE-EFKS---QFPIPIKHVWQEDE-------G--FRKA 68 (182)
T ss_pred EEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHH-HHHh---hcCCceEEEEcCCc-------c--hhHH
Confidence 467777756788899998764 234777776555544433342 2211 01111122222111 0 2556
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHH
Q 010554 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSH 237 (507)
Q Consensus 197 ~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h 237 (507)
.++..+..... .+.++++.+|.+...+ +..+++.+
T Consensus 69 ~~~n~g~~~a~------g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 69 KIRNKAIAAAK------GDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHHHhc------CCEEEEEcCCcccCHHHHHHHHHHh
Confidence 66666554432 5789999999988766 46666554
No 301
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=46.07 E-value=61 Score=30.36 Aligned_cols=107 Identities=15% Similarity=0.160 Sum_probs=53.9
Q ss_pred cceeecCcchhhHHHHHHHHhc--CCCEEEEEeccCchHH---HHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcc
Q 010554 118 PAVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSASL---NRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF 192 (507)
Q Consensus 118 ~LlPI~g~ypLId~~L~~l~~~--Gi~~I~Vv~~~~~~~l---~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~ 192 (507)
.++|..|..+.|..+|+.+... .--+|+|+.+...+.. .+.+...+ +...+.++......+ .
T Consensus 5 Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~-------~~~~v~vi~~~~~~g------~ 71 (228)
T PF13641_consen 5 VVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARY-------PRVRVRVIRRPRNPG------P 71 (228)
T ss_dssp EE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTT-------GG-GEEEEE----HH------H
T ss_pred EEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHc-------CCCceEEeecCCCCC------c
Confidence 3577777767888888888764 2236666665443332 23332222 111256664332110 1
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcCCc
Q 010554 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDAD 243 (507)
Q Consensus 193 ~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~a~ 243 (507)
.|.+.++..+....+ .+.++++..|.+...+ +..+++.+...+..
T Consensus 72 ~~k~~a~n~~~~~~~------~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~ 117 (228)
T PF13641_consen 72 GGKARALNEALAAAR------GDYILFLDDDTVLDPDWLERLLAAFADPGVG 117 (228)
T ss_dssp HHHHHHHHHHHHH---------SEEEEE-SSEEE-CHHHHHHHHHHHBSS--
T ss_pred chHHHHHHHHHHhcC------CCEEEEECCCcEECHHHHHHHHHHHHhCCCC
Confidence 245677777665543 5889999999999777 57777777344443
No 302
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=45.29 E-value=2.8e+02 Score=26.36 Aligned_cols=102 Identities=14% Similarity=0.174 Sum_probs=57.4
Q ss_pred hhhHHHHHHHH-hcCCC-EEEEEecc---CchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChHHHHHH
Q 010554 127 RLIDIPMSNCI-NSGIN-KIFVLTQF---NSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQ 201 (507)
Q Consensus 127 pLId~~L~~l~-~~Gi~-~I~Vv~~~---~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~ 201 (507)
|++-|.+.... +.|.+ +|+|+-.. ....+.+.|++.| +..+|.+..-.. .+|.+.|...
T Consensus 19 pi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~y-------g~d~i~l~pR~~---------klGLgtAy~h 82 (238)
T KOG2978|consen 19 PIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIY-------GEDNILLKPRTK---------KLGLGTAYIH 82 (238)
T ss_pred eeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHh-------CCCcEEEEeccC---------cccchHHHHh
Confidence 34445444443 34665 55555322 2335556665444 223355543222 2577777777
Q ss_pred HHHHHHhhhcCCCCeEEEEcCceeccC-CHHHHHHHHHHcCCceEEEEEE
Q 010554 202 FTWVFEDAKNRNIENVAILCGDHLYRM-DYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 202 ~~~~l~~~~~~~~~~~lVl~gD~i~~~-dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
...+.+ .+.++++.+|.=-.. -+.+|++...+.+.|++....-
T Consensus 83 gl~~a~------g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRY 126 (238)
T KOG2978|consen 83 GLKHAT------GDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRY 126 (238)
T ss_pred hhhhcc------CCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeeeE
Confidence 665543 356677788875543 3578888877777787766544
No 303
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=44.87 E-value=2.4e+02 Score=25.60 Aligned_cols=101 Identities=9% Similarity=0.014 Sum_probs=59.0
Q ss_pred ceeecCcchhhHHHHHHHHhcCC--CEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChH
Q 010554 119 AVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~Gi--~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (507)
.+|.-|....|..+|+.+.+.-. .+|+|+-+...+...+.+.+ +.. ... +.++..... .|.+
T Consensus 2 iI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~-~~~---~~~---i~~~~~~~n---------~g~~ 65 (202)
T cd04185 2 VVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTS-LGD---LDN---IVYLRLPEN---------LGGA 65 (202)
T ss_pred EEEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHH-hcC---CCc---eEEEECccc---------cchh
Confidence 45666765778888999887532 46777765555455444432 211 111 444432221 4777
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCH-HHHHHHHH
Q 010554 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHV 238 (507)
Q Consensus 197 ~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl-~~ll~~h~ 238 (507)
.++..+...... ...+.++++..|.+...++ ..+++...
T Consensus 66 ~~~n~~~~~a~~---~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 66 GGFYEGVRRAYE---LGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred hHHHHHHHHHhc---cCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 777666544321 2357899999999887774 55555544
No 304
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=40.60 E-value=2.3e+02 Score=29.01 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=32.7
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHH---cCCceEEE
Q 010554 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD---RDADITIS 247 (507)
Q Consensus 193 ~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~---~~a~~tl~ 247 (507)
.|.+.|++.+...- ..+.++++.+|...+.+ +..+++...+ .+.++.+.
T Consensus 148 ~G~~~A~~~Gi~~a------~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~G 200 (333)
T PTZ00260 148 KGKGGAVRIGMLAS------RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFG 200 (333)
T ss_pred CChHHHHHHHHHHc------cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEe
Confidence 58999998876443 24788999999877654 5666665443 45554444
No 305
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=39.15 E-value=3.1e+02 Score=32.17 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=58.2
Q ss_pred cceeecCcch--hhHHHHHHHHhcCC--C--EEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCc
Q 010554 118 PAVPVAGCYR--LIDIPMSNCINSGI--N--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNW 191 (507)
Q Consensus 118 ~LlPI~g~yp--LId~~L~~l~~~Gi--~--~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~ 191 (507)
-++|..|. + ++..++..+.+..- + +|+|+-....+...+... . .+ ++++...+..
T Consensus 264 ViIPtYNE-~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~-~-------~~---v~yI~R~~n~------- 324 (852)
T PRK11498 264 IFVPTYNE-DLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQ-E-------VG---VKYIARPTHE------- 324 (852)
T ss_pred EEEecCCC-cHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHH-H-------CC---cEEEEeCCCC-------
Confidence 45677776 4 56667777665432 1 577776555555544443 1 12 4444322111
Q ss_pred ccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCH-HHHHHHHHHc
Q 010554 192 FQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDR 240 (507)
Q Consensus 192 ~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl-~~ll~~h~~~ 240 (507)
.|-++++..+....+ .|.++++.+|++...|+ +.++..+.+.
T Consensus 325 -~gKAGnLN~aL~~a~------GEyIavlDAD~ip~pdfL~~~V~~f~~d 367 (852)
T PRK11498 325 -HAKAGNINNALKYAK------GEFVAIFDCDHVPTRSFLQMTMGWFLKD 367 (852)
T ss_pred -cchHHHHHHHHHhCC------CCEEEEECCCCCCChHHHHHHHHHHHhC
Confidence 267888887765542 58899999999987774 5666655443
No 306
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=37.42 E-value=52 Score=28.36 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.9
Q ss_pred CcchhhHHHHHHHHhcCCCEEEEEe
Q 010554 124 GCYRLIDIPMSNCINSGINKIFVLT 148 (507)
Q Consensus 124 g~ypLId~~L~~l~~~Gi~~I~Vv~ 148 (507)
+. |-|+..++.|.+.|.++|+|+=
T Consensus 44 ~~-P~l~~~l~~l~~~g~~~v~vvP 67 (126)
T PRK00923 44 NE-PTIPEALKKLIGTGADKIIVVP 67 (126)
T ss_pred CC-CCHHHHHHHHHHcCCCEEEEEc
Confidence 55 8999999999999999998863
No 307
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=35.89 E-value=3.6e+02 Score=25.05 Aligned_cols=94 Identities=11% Similarity=0.103 Sum_probs=54.5
Q ss_pred ceeecCcc-hhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChHH
Q 010554 119 AVPVAGCY-RLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTAD 197 (507)
Q Consensus 119 LlPI~g~y-pLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~ 197 (507)
.+|.-|.. ..|..+|+.+.+. ..+|+|+=+...+....... + ....+.++..... .|-+.
T Consensus 2 vI~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~--~-------~~~~i~~i~~~~n---------~G~~~ 62 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLR--L-------NSEKIELIHLGEN---------LGIAK 62 (237)
T ss_pred EEEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhh--c-------cCCcEEEEECCCc---------eehHH
Confidence 35666664 6778888888776 55676665433222221111 1 1112555543322 47788
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEcCceeccCCH-HHHH
Q 010554 198 AVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFI 234 (507)
Q Consensus 198 AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl-~~ll 234 (507)
|...+..... +...+.++++.+|.....++ ..++
T Consensus 63 a~N~g~~~a~---~~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 63 ALNIGIKAAL---ENGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred hhhHHHHHHH---hCCCCEEEEECCCCCcCHhHHHHHH
Confidence 8877765443 12348899999999887664 5553
No 308
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=33.68 E-value=3e+02 Score=28.67 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=68.5
Q ss_pred cceeecCcch-hhHHHHHHHHhcCCC--EEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccC
Q 010554 118 PAVPVAGCYR-LIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (507)
Q Consensus 118 ~LlPI~g~yp-LId~~L~~l~~~Gi~--~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (507)
-++|.-|..+ .++.+++++.+.... +|+++.....+...+.+.+.. . +++ ..+++....+ ...|
T Consensus 58 viiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~-~---~~~-~~~~~~~~~~--------~~~g 124 (439)
T COG1215 58 VIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELG-A---EYG-PNFRVIYPEK--------KNGG 124 (439)
T ss_pred EEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHH-h---hcC-cceEEEeccc--------cCcc
Confidence 5667777767 899999999988654 777777656666655554322 1 111 1233331101 1247
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcCC
Q 010554 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDA 242 (507)
Q Consensus 195 ta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~a 242 (507)
.+.|+..+....+ .+-++++.+|++...| +.+++..+.+...
T Consensus 125 K~~al~~~l~~~~------~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 125 KAGALNNGLKRAK------GDVVVILDADTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred chHHHHHHHhhcC------CCEEEEEcCCCCCChhHHHHHHhhhcCCCe
Confidence 8899988765543 5788999999998877 5777777765543
No 309
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=32.81 E-value=1.1e+02 Score=32.01 Aligned_cols=81 Identities=14% Similarity=0.152 Sum_probs=46.3
Q ss_pred HHHHHhcC-CCEEEEEeccCch-HHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhh
Q 010554 133 MSNCINSG-INKIFVLTQFNSA-SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAK 210 (507)
Q Consensus 133 L~~l~~~G-i~~I~Vv~~~~~~-~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~ 210 (507)
+..|.+.+ ++.++|+|+.+.+ .+.+.+.+.+ +- ...+-...+....|+. ..-|+.++..+.+.+++
T Consensus 23 i~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~-~i--~~pdy~L~i~~~~~tl-------~~~t~~~i~~~~~vl~~-- 90 (383)
T COG0381 23 VKALEKDPDFELIVIHTGQHRDYEMLDQVLELF-GI--RKPDYDLNIMKPGQTL-------GEITGNIIEGLSKVLEE-- 90 (383)
T ss_pred HHHHHhCCCCceEEEEecccccHHHHHHHHHHh-CC--CCCCcchhccccCCCH-------HHHHHHHHHHHHHHHHh--
Confidence 34566665 9999999987762 3333333333 21 1111123333223322 23577777777777764
Q ss_pred cCCCCeEEEEcCceecc
Q 010554 211 NRNIENVAILCGDHLYR 227 (507)
Q Consensus 211 ~~~~~~~lVl~gD~i~~ 227 (507)
...|.+++.||+-+-
T Consensus 91 --~kPD~VlVhGDT~t~ 105 (383)
T COG0381 91 --EKPDLVLVHGDTNTT 105 (383)
T ss_pred --hCCCEEEEeCCcchH
Confidence 357899999999664
No 310
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=30.86 E-value=4.3e+02 Score=26.68 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=34.0
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-ccCC-HHHHHHHHH-HcCCceEEEE
Q 010554 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMD-YMDFIQSHV-DRDADITISC 248 (507)
Q Consensus 193 ~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i-~~~d-l~~ll~~h~-~~~a~~tl~~ 248 (507)
.|-+.|+....... ..+.++++.+|.. .+.+ +..+++... +.+.+++..+
T Consensus 101 ~Gkg~A~~~g~~~a------~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~ 153 (306)
T PRK13915 101 PGKGEALWRSLAAT------TGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAF 153 (306)
T ss_pred CCHHHHHHHHHHhc------CCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 48889988765432 2478999999996 5554 677887765 3455555544
No 311
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=29.95 E-value=1.1e+02 Score=28.56 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=40.3
Q ss_pred eeeeEEEEEeHHHHHHHHHhhCCCCCc------hhh-----hhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 305 VASMGVYVFKKDVLFKLLRWRYPTSND------FGS-----EIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 305 l~~~Giyif~~~iL~~ll~~~~~~~~d------~~~-----dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
.+++-++++++.++..+.+.......+ .+. .++.. ..+...+.....+..++|||++||..|++.+-.
T Consensus 91 vvsaDLp~l~~~~i~~vi~~~~~~~~p~~~~~~~G~v~~Glni~~~-~~~~~~~~i~~~~la~NVNT~eDl~~a~~ll~~ 169 (177)
T COG2266 91 VVSADLPFLNPSIIDSVIDAAASVEVPIVTVVKAGRVPVGLNIVGG-KQEEEILEIDNPELAVNVNTPEDLKKAERLLRT 169 (177)
T ss_pred EEecccccCCHHHHHHHHHHHhhccCceeEeeccCccceeeEeecC-CCcceeEEeeccceeEecCCHHHHHHHHHHHhh
Confidence 467778899999998777654311000 000 11111 122333333334678899999999999998753
No 312
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=29.80 E-value=5.3e+02 Score=25.06 Aligned_cols=90 Identities=12% Similarity=0.024 Sum_probs=53.6
Q ss_pred hhHHHHHHHHhcCCCEEEEEeccC--chHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHH
Q 010554 128 LIDIPMSNCINSGINKIFVLTQFN--SASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWV 205 (507)
Q Consensus 128 LId~~L~~l~~~Gi~~I~Vv~~~~--~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~ 205 (507)
.|...++.+.+. ..+|+||=+.. .+.+.+.+. . . ..+.++..... +|-|.|.......
T Consensus 9 ~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~-~-------~--~~i~~i~~~~N---------~G~a~a~N~Gi~~ 68 (281)
T TIGR01556 9 HLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARL-R-------G--QKIALIHLGDN---------QGIAGAQNQGLDA 68 (281)
T ss_pred HHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhc-c-------C--CCeEEEECCCC---------cchHHHHHHHHHH
Confidence 566677777654 45776665542 223332221 1 1 12666653322 5889998887665
Q ss_pred HHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHc
Q 010554 206 FEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDR 240 (507)
Q Consensus 206 l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~ 240 (507)
..+ ...+.++++..|.+...+ +..+++.....
T Consensus 69 a~~---~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 69 SFR---RGVQGVLLLDQDSRPGNAFLAAQWKLLSAE 101 (281)
T ss_pred HHH---CCCCEEEEECCCCCCCHHHHHHHHHHHHhc
Confidence 531 245889999999988766 46666655444
No 313
>PRK10063 putative glycosyl transferase; Provisional
Probab=28.29 E-value=5.5e+02 Score=24.80 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=55.6
Q ss_pred eeecCcchhhHHHHHHHHhc----CC-CEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccC
Q 010554 120 VPVAGCYRLIDIPMSNCINS----GI-NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (507)
Q Consensus 120 lPI~g~ypLId~~L~~l~~~----Gi-~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (507)
+|.-|....|..+|+.+.+. +. -+|+|+=+...+...+.+. .+.. .. .+.++.. .. .|
T Consensus 7 i~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~-~~~~---~~---~i~~i~~--~~--------~G 69 (248)
T PRK10063 7 TVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLE-NLNG---IF---NLRFVSE--PD--------NG 69 (248)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHH-Hhcc---cC---CEEEEEC--CC--------CC
Confidence 45555546788888887531 22 2566664444444444443 3211 11 1555532 11 48
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHc
Q 010554 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240 (507)
Q Consensus 195 ta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~ 240 (507)
.++|+..+..... .+.++.+++|-+...+..+++......
T Consensus 70 ~~~A~N~Gi~~a~------g~~v~~ld~DD~~~~~~~~~~~~~~~~ 109 (248)
T PRK10063 70 IYDAMNKGIAMAQ------GRFALFLNSGDIFHQDAANFVRQLKMQ 109 (248)
T ss_pred HHHHHHHHHHHcC------CCEEEEEeCCcccCcCHHHHHHHHHhC
Confidence 8999988765543 478889998887766765555554433
No 314
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=26.95 E-value=10 Score=37.70 Aligned_cols=65 Identities=9% Similarity=0.054 Sum_probs=45.0
Q ss_pred CeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCC-----CCCccceEEEECCCCcEEEEEeCCCcc
Q 010554 215 ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE-----SRASDYGLVKIDNMGRIAQFAEKPSGA 280 (507)
Q Consensus 215 ~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~-----~~~~~~g~v~id~~grV~~~~eKp~~~ 280 (507)
+....-+||++..++...+++.|+++|... +.+..+++ .++.-+|++..++...+..+.+|+...
T Consensus 108 ~~~P~GnGdi~~~L~~sglLd~l~~~G~~y-i~v~~vDN~la~v~DP~~lG~~~~~~~~~~~kvv~K~~~d 177 (266)
T cd04180 108 HLFPCGHGDVVLALIHSGHLNKLLEKGYRY-IHFIGVDNLLVKVADPLFIGIAIQNRKAINQKVVPKTRNE 177 (266)
T ss_pred eeccCCcHHHHHHHHHCChHHHHHHcCCEE-EEEEccCccCccccCHHHHHHHHHcCCCEEEEEEECCCCC
Confidence 345666788888777788999999998763 23333332 124557777777778899999998653
No 315
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=22.24 E-value=1.6e+02 Score=30.58 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=44.0
Q ss_pred CcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccC--chHHHHHHH
Q 010554 106 TKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFN--SASLNRHIA 160 (507)
Q Consensus 106 tRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~--~~~l~~~l~ 160 (507)
..+.||....+.-++-|-++...+.+.|+.|.++ ||++..++.+|. .+++.+.+.
T Consensus 23 ~~f~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~ 80 (356)
T PF05060_consen 23 DKFGPLANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQ 80 (356)
T ss_pred hhcCCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHH
Confidence 4566777777888889999977899999999986 999999998866 456666664
No 316
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=21.32 E-value=1.4e+02 Score=24.12 Aligned_cols=22 Identities=5% Similarity=0.218 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHhcCCCEEEEEe
Q 010554 127 RLIDIPMSNCINSGINKIFVLT 148 (507)
Q Consensus 127 pLId~~L~~l~~~Gi~~I~Vv~ 148 (507)
|.++-.++.|...|+++|+|+-
T Consensus 45 P~i~~~l~~l~~~g~~~vvvvP 66 (101)
T cd03409 45 PDTEEAIRELAEEGYQRVVIVP 66 (101)
T ss_pred CCHHHHHHHHHHcCCCeEEEEe
Confidence 7777777777777777777664
No 317
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=20.01 E-value=1.5e+02 Score=24.27 Aligned_cols=31 Identities=10% Similarity=0.202 Sum_probs=24.9
Q ss_pred eeecCcchhhHHHHHHHHh--cCCCEEEEEeccC
Q 010554 120 VPVAGCYRLIDIPMSNCIN--SGINKIFVLTQFN 151 (507)
Q Consensus 120 lPI~g~ypLId~~L~~l~~--~Gi~~I~Vv~~~~ 151 (507)
+-||++ |+..|++.-+.+ .|.++|.+-...+
T Consensus 4 i~vG~K-PvmnYVlavlt~fn~g~~eV~iKarG~ 36 (87)
T TIGR00285 4 VYIGNK-PVMNYVLAVLTQLNSGADEVIIKARGR 36 (87)
T ss_pred EEEcCC-cHHHHHHHHHHHHhCCCCeEEEEEecc
Confidence 457888 999999999875 5899998876543
Done!