Query 010555
Match_columns 507
No_of_seqs 221 out of 985
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 01:54:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02759 Formate--tetrahydrofo 100.0 6E-238 1E-242 1854.7 46.5 502 4-505 4-505 (637)
2 PTZ00386 formyl tetrahydrofola 100.0 3E-232 6E-237 1809.1 44.0 488 6-505 5-493 (625)
3 PRK13507 formate--tetrahydrofo 100.0 5E-220 1E-224 1709.8 41.0 451 11-505 2-455 (587)
4 KOG4230 C1-tetrahydrofolate sy 100.0 3E-216 8E-221 1678.6 38.4 498 6-505 302-805 (935)
5 PF01268 FTHFS: Formate--tetra 100.0 2E-215 5E-220 1675.0 25.3 425 16-505 1-425 (557)
6 COG2759 MIS1 Formyltetrahydrof 100.0 1E-211 2E-216 1614.7 35.4 424 18-506 1-424 (554)
7 PRK13506 formate--tetrahydrofo 100.0 2E-209 4E-214 1630.8 40.5 447 16-505 1-448 (578)
8 PRK13505 formate--tetrahydrofo 100.0 2E-200 3E-205 1564.0 39.5 427 15-506 1-427 (557)
9 cd00477 FTHFS Formyltetrahydro 100.0 1E-199 3E-204 1545.2 36.6 410 32-505 1-410 (524)
10 TIGR03029 EpsG chain length de 97.1 0.00046 1E-08 66.7 3.9 51 67-121 101-154 (274)
11 CHL00175 minD septum-site dete 96.4 0.004 8.8E-08 60.5 4.8 55 64-122 10-67 (281)
12 TIGR01007 eps_fam capsular exo 96.4 0.0038 8.2E-08 57.8 4.4 52 67-122 15-69 (204)
13 PRK11519 tyrosine kinase; Prov 96.3 0.0046 9.9E-08 68.9 4.9 52 67-122 524-578 (719)
14 TIGR01005 eps_transp_fam exopo 96.0 0.006 1.3E-07 67.7 3.9 51 67-121 544-597 (754)
15 TIGR03018 pepcterm_TyrKin exop 95.9 0.011 2.3E-07 55.5 4.8 52 67-121 33-87 (207)
16 PRK09841 cryptic autophosphory 95.8 0.0094 2E-07 66.6 4.4 51 67-121 529-582 (726)
17 PRK13705 plasmid-partitioning 95.7 0.012 2.7E-07 61.4 4.8 91 28-119 39-155 (388)
18 PHA02519 plasmid partition pro 95.5 0.023 5E-07 59.5 5.7 90 29-120 40-156 (387)
19 TIGR01968 minD_bact septum sit 95.4 0.018 3.8E-07 54.2 4.3 48 69-120 1-51 (261)
20 cd02033 BchX Chlorophyllide re 95.4 0.02 4.4E-07 59.1 5.1 52 67-123 29-83 (329)
21 TIGR03453 partition_RepA plasm 95.2 0.027 5.9E-07 58.1 5.2 47 70-120 105-153 (387)
22 PRK13869 plasmid-partitioning 95.2 0.027 5.9E-07 59.1 5.2 46 70-119 122-169 (405)
23 TIGR00347 bioD dethiobiotin sy 95.1 0.015 3.2E-07 52.1 2.7 35 77-114 2-36 (166)
24 COG0489 Mrp ATPases involved i 95.0 0.019 4.1E-07 57.1 3.1 52 68-123 56-110 (265)
25 COG2805 PilT Tfp pilus assembl 94.8 0.034 7.3E-07 58.2 4.5 45 62-112 119-163 (353)
26 cd01983 Fer4_NifH The Fer4_Nif 94.4 0.046 1E-06 42.5 3.5 26 83-110 9-34 (99)
27 cd00550 ArsA_ATPase Oxyanion-t 94.3 0.035 7.6E-07 54.3 3.3 47 70-122 1-50 (254)
28 cd02037 MRP-like MRP (Multiple 94.0 0.055 1.2E-06 48.8 3.5 35 77-112 4-38 (169)
29 cd02117 NifH_like This family 93.6 0.073 1.6E-06 50.0 3.9 39 71-114 2-40 (212)
30 cd02036 MinD Bacterial cell di 93.6 0.061 1.3E-06 47.6 3.1 41 77-118 4-47 (179)
31 PRK13185 chlL protochlorophyll 93.4 0.086 1.9E-06 51.0 4.0 39 69-112 2-40 (270)
32 PF02367 UPF0079: Uncharacteri 93.3 0.067 1.5E-06 48.4 3.0 40 67-120 13-52 (123)
33 PRK00698 tmk thymidylate kinas 93.2 0.099 2.1E-06 47.7 3.9 45 68-119 2-46 (205)
34 COG2894 MinD Septum formation 93.2 0.094 2E-06 53.2 4.0 36 69-108 2-37 (272)
35 cd02040 NifH NifH gene encodes 92.7 0.076 1.6E-06 50.7 2.5 31 81-112 9-39 (270)
36 PRK13230 nitrogenase reductase 92.5 0.082 1.8E-06 51.7 2.5 31 81-112 9-39 (279)
37 TIGR01969 minD_arch cell divis 92.5 0.13 2.8E-06 48.2 3.7 44 77-121 5-51 (251)
38 PLN02924 thymidylate kinase 92.4 0.16 3.4E-06 49.4 4.3 47 66-118 13-59 (220)
39 PF02374 ArsA_ATPase: Anion-tr 92.3 0.082 1.8E-06 53.7 2.2 56 70-133 2-59 (305)
40 TIGR01281 DPOR_bchL light-inde 92.2 0.094 2E-06 50.6 2.5 31 81-112 8-38 (268)
41 TIGR00064 ftsY signal recognit 92.1 0.18 4E-06 50.4 4.4 35 68-107 71-105 (272)
42 TIGR03815 CpaE_hom_Actino heli 91.9 0.24 5.2E-06 49.6 4.9 51 67-121 91-144 (322)
43 TIGR00041 DTMP_kinase thymidyl 91.8 0.25 5.4E-06 45.1 4.6 40 69-114 3-42 (195)
44 TIGR01287 nifH nitrogenase iro 91.6 0.12 2.6E-06 50.2 2.5 27 81-108 8-34 (275)
45 cd01672 TMPK Thymidine monopho 91.5 0.28 6.2E-06 43.8 4.6 41 70-116 1-41 (200)
46 PRK13973 thymidylate kinase; P 91.5 0.27 5.8E-06 46.8 4.6 43 68-116 2-44 (213)
47 PRK10037 cell division protein 91.3 0.17 3.7E-06 48.8 3.2 44 76-120 5-50 (250)
48 COG0125 Tmk Thymidylate kinase 91.2 0.27 5.8E-06 48.0 4.4 44 68-117 2-45 (208)
49 PF01656 CbiA: CobQ/CobB/MinD/ 91.2 0.15 3.3E-06 45.6 2.5 33 79-112 5-37 (195)
50 PHA02518 ParA-like protein; Pr 91.2 0.16 3.4E-06 46.5 2.6 29 79-108 7-35 (211)
51 PRK13235 nifH nitrogenase redu 91.1 0.18 3.9E-06 49.2 3.1 37 81-118 9-45 (274)
52 PRK00300 gmk guanylate kinase; 91.1 0.23 4.9E-06 45.8 3.6 45 67-116 3-47 (205)
53 cd02032 Bchl_like This family 90.8 0.24 5.2E-06 48.0 3.6 33 81-114 8-40 (267)
54 PRK11670 antiporter inner memb 90.8 0.25 5.4E-06 51.6 4.0 49 69-121 107-158 (369)
55 PRK00090 bioD dithiobiotin syn 90.7 0.17 3.7E-06 47.5 2.5 30 77-107 4-33 (222)
56 TIGR00150 HI0065_YjeE ATPase, 90.7 0.23 4.9E-06 45.6 3.2 72 67-163 20-92 (133)
57 PF09140 MipZ: ATPase MipZ; I 90.4 0.11 2.5E-06 52.8 1.1 38 80-118 8-48 (261)
58 PRK13232 nifH nitrogenase redu 90.4 0.22 4.8E-06 48.5 3.0 32 80-112 8-39 (273)
59 PRK10646 ADP-binding protein; 90.4 0.25 5.4E-06 46.4 3.3 28 67-98 26-53 (153)
60 PRK13234 nifH nitrogenase redu 90.3 0.23 5.1E-06 49.7 3.2 35 80-115 11-48 (295)
61 TIGR03371 cellulose_yhjQ cellu 89.9 0.25 5.5E-06 46.4 2.9 35 70-108 2-36 (246)
62 CHL00072 chlL photochlorophyll 89.7 0.23 5E-06 49.8 2.6 32 81-113 8-39 (290)
63 cd02035 ArsA ArsA ATPase funct 89.4 0.33 7.2E-06 46.2 3.3 27 81-108 7-33 (217)
64 PRK13768 GTPase; Provisional 89.2 0.5 1.1E-05 46.5 4.4 39 70-113 3-41 (253)
65 PRK04296 thymidine kinase; Pro 89.0 0.51 1.1E-05 44.3 4.1 45 69-120 2-46 (190)
66 COG0802 Predicted ATPase or ki 89.0 0.38 8.3E-06 45.4 3.3 28 67-98 23-50 (149)
67 TIGR02016 BchX chlorophyllide 88.9 0.34 7.5E-06 48.8 3.2 34 81-115 8-41 (296)
68 PRK13231 nitrogenase reductase 88.9 0.19 4.2E-06 48.5 1.3 26 81-109 10-35 (264)
69 PF13500 AAA_26: AAA domain; P 88.6 0.32 6.8E-06 45.1 2.5 29 77-106 5-33 (199)
70 PRK10416 signal recognition pa 88.6 0.54 1.2E-05 48.3 4.4 36 67-107 112-147 (318)
71 PRK13976 thymidylate kinase; P 88.5 0.52 1.1E-05 45.4 4.0 40 70-113 1-40 (209)
72 PRK13233 nifH nitrogenase redu 88.5 0.36 7.9E-06 46.9 2.9 27 80-107 9-36 (275)
73 COG0003 ArsA Predicted ATPase 88.2 0.49 1.1E-05 49.2 3.8 68 70-164 3-72 (322)
74 PRK10818 cell division inhibit 88.2 0.42 9.1E-06 46.1 3.1 36 69-108 2-37 (270)
75 COG2804 PulE Type II secretory 87.9 0.55 1.2E-05 51.7 4.1 86 63-164 253-354 (500)
76 cd03110 Fer4_NifH_child This p 87.8 0.38 8.2E-06 43.5 2.4 40 78-122 5-47 (179)
77 TIGR03263 guanyl_kin guanylate 87.7 0.39 8.6E-06 43.2 2.5 43 69-116 1-43 (180)
78 cd03174 DRE_TIM_metallolyase D 87.6 3 6.4E-05 40.0 8.4 124 364-488 32-168 (265)
79 PF02223 Thymidylate_kin: Thym 87.5 0.33 7.2E-06 44.3 1.9 34 82-117 5-38 (186)
80 PRK13236 nitrogenase reductase 87.0 0.44 9.6E-06 47.7 2.6 33 81-114 14-46 (296)
81 COG1149 MinD superfamily P-loo 86.9 0.9 2E-05 47.0 4.7 134 272-484 108-243 (284)
82 PRK08233 hypothetical protein; 86.6 0.48 1E-05 42.3 2.3 25 69-97 3-27 (182)
83 cd04165 GTPBP1_like GTPBP1-lik 86.5 1.8 4E-05 42.0 6.4 36 438-473 126-161 (224)
84 PRK05480 uridine/cytidine kina 86.4 0.89 1.9E-05 42.5 4.1 26 68-97 5-30 (209)
85 cd03111 CpaE_like This protein 86.4 0.57 1.2E-05 40.1 2.6 37 76-113 3-40 (106)
86 PRK14974 cell division protein 86.4 0.93 2E-05 47.3 4.6 36 67-107 138-173 (336)
87 cd02042 ParA ParA and ParB of 85.5 0.68 1.5E-05 38.3 2.6 32 81-113 8-39 (104)
88 TIGR03499 FlhF flagellar biosy 85.5 1 2.2E-05 45.1 4.3 27 68-98 193-219 (282)
89 PRK12374 putative dithiobiotin 85.4 0.58 1.3E-05 45.0 2.4 32 77-110 7-38 (231)
90 cd02025 PanK Pantothenate kina 85.2 0.76 1.6E-05 44.4 3.1 35 81-139 7-41 (220)
91 PF06564 YhjQ: YhjQ protein; 85.2 0.73 1.6E-05 46.3 3.1 52 70-147 2-53 (243)
92 PF13614 AAA_31: AAA domain; P 84.7 1.2 2.6E-05 38.9 3.9 49 70-122 1-52 (157)
93 PRK10867 signal recognition pa 84.6 1.1 2.4E-05 48.3 4.3 36 69-109 100-136 (433)
94 cd03115 SRP The signal recogni 84.5 0.84 1.8E-05 41.2 2.9 29 81-110 8-36 (173)
95 PRK00131 aroK shikimate kinase 84.3 0.88 1.9E-05 40.0 2.9 28 67-98 2-29 (175)
96 COG1192 Soj ATPases involved i 84.3 0.65 1.4E-05 44.6 2.2 33 80-112 10-42 (259)
97 PRK07933 thymidylate kinase; V 84.1 1.6 3.5E-05 41.9 4.8 40 70-115 1-40 (213)
98 PRK13849 putative crown gall t 83.7 0.98 2.1E-05 44.2 3.2 34 77-111 6-39 (231)
99 PF02421 FeoB_N: Ferrous iron 83.4 0.8 1.7E-05 43.0 2.4 58 443-503 98-156 (156)
100 PRK00889 adenylylsulfate kinas 83.2 1.6 3.4E-05 39.6 4.1 34 67-105 2-35 (175)
101 TIGR01420 pilT_fam pilus retra 83.1 1.5 3.3E-05 45.0 4.4 40 68-112 121-160 (343)
102 COG1797 CobB Cobyrinic acid a, 83.1 0.7 1.5E-05 50.3 2.0 26 78-104 6-31 (451)
103 PRK12726 flagellar biosynthesi 82.9 1.4 3.1E-05 47.5 4.3 35 67-106 204-238 (407)
104 PRK06278 cobyrinic acid a,c-di 82.8 1.3 2.8E-05 48.3 4.0 24 72-98 241-264 (476)
105 PRK10436 hypothetical protein; 82.2 1.5 3.2E-05 47.6 4.0 40 68-113 217-256 (462)
106 KOG0635 Adenosine 5'-phosphosu 81.3 2.1 4.5E-05 41.9 4.3 35 67-106 29-63 (207)
107 PRK00771 signal recognition pa 81.2 1.8 3.9E-05 46.7 4.3 35 69-108 95-129 (437)
108 PRK03846 adenylylsulfate kinas 80.6 2.1 4.6E-05 40.0 4.0 35 67-106 22-56 (198)
109 smart00763 AAA_PrkA PrkA AAA d 80.5 1.5 3.1E-05 46.6 3.2 79 46-143 52-133 (361)
110 TIGR00379 cobB cobyrinic acid 80.5 1.2 2.5E-05 47.7 2.5 31 77-108 4-34 (449)
111 PF03029 ATP_bind_1: Conserved 80.3 1.3 2.9E-05 43.6 2.7 27 81-108 4-30 (238)
112 PTZ00301 uridine kinase; Provi 80.1 1.6 3.4E-05 42.4 3.1 27 70-100 4-30 (210)
113 TIGR00475 selB selenocysteine- 80.1 6.7 0.00015 43.6 8.3 61 439-502 91-160 (581)
114 cd01131 PilT Pilus retraction 80.0 2.4 5.1E-05 40.1 4.2 38 71-113 3-40 (198)
115 PRK06696 uridine kinase; Valid 79.8 2 4.3E-05 41.0 3.7 26 69-98 22-47 (223)
116 cd02038 FleN-like FleN is a me 78.9 2.3 4.9E-05 37.8 3.5 32 80-112 7-38 (139)
117 TIGR00235 udk uridine kinase. 78.8 1.7 3.7E-05 40.8 2.9 28 66-97 3-30 (207)
118 PF13604 AAA_30: AAA domain; P 78.7 2.8 6.2E-05 39.6 4.3 36 68-108 17-52 (196)
119 COG0826 Collagenase and relate 78.6 5.1 0.00011 42.2 6.5 58 438-502 50-109 (347)
120 TIGR02538 type_IV_pilB type IV 78.5 2.1 4.5E-05 47.2 3.8 39 69-113 316-354 (564)
121 TIGR00677 fadh2_euk methylenet 78.5 7.6 0.00016 39.5 7.5 127 339-480 138-277 (281)
122 cd03109 DTBS Dethiobiotin synt 78.5 1.6 3.4E-05 38.9 2.4 25 81-106 7-31 (134)
123 cd01394 radB RadB. The archaea 78.5 2.5 5.5E-05 39.6 3.8 37 66-107 16-52 (218)
124 PRK05541 adenylylsulfate kinas 78.1 3.4 7.4E-05 37.5 4.5 35 67-106 5-39 (176)
125 PRK13896 cobyrinic acid a,c-di 78.0 1.6 3.5E-05 47.0 2.7 36 78-118 7-42 (433)
126 TIGR02524 dot_icm_DotB Dot/Icm 78.0 3 6.5E-05 43.7 4.6 45 67-115 132-177 (358)
127 TIGR02237 recomb_radB DNA repa 77.7 2.7 6E-05 38.9 3.8 27 67-97 10-36 (209)
128 PF01583 APS_kinase: Adenylyls 77.6 2.6 5.5E-05 39.8 3.6 36 68-108 1-36 (156)
129 TIGR02322 phosphon_PhnN phosph 76.6 2 4.2E-05 39.0 2.5 26 69-98 1-26 (179)
130 PTZ00141 elongation factor 1- 76.4 2.8 6E-05 45.0 3.9 70 378-474 95-173 (446)
131 TIGR00485 EF-Tu translation el 76.2 10 0.00023 39.5 7.9 71 378-479 85-162 (394)
132 COG0771 MurD UDP-N-acetylmuram 76.1 2.9 6.2E-05 45.6 4.0 97 30-161 84-193 (448)
133 TIGR02533 type_II_gspE general 75.6 2.7 5.9E-05 45.7 3.6 39 67-112 241-279 (486)
134 PF00009 GTP_EFTU: Elongation 75.5 17 0.00037 33.3 8.3 65 438-505 110-184 (188)
135 cd04145 M_R_Ras_like M-Ras/R-R 75.2 15 0.00033 31.6 7.5 55 448-505 105-161 (164)
136 PF07015 VirC1: VirC1 protein; 74.9 2.1 4.5E-05 43.0 2.4 29 79-108 8-36 (231)
137 PRK01077 cobyrinic acid a,c-di 74.6 1.8 3.8E-05 46.2 1.9 33 71-107 5-37 (451)
138 TIGR00231 small_GTP small GTP- 74.5 18 0.00038 29.7 7.4 60 442-503 100-159 (161)
139 smart00382 AAA ATPases associa 73.8 2.2 4.9E-05 34.1 1.9 26 69-98 2-27 (148)
140 TIGR03470 HpnH hopanoid biosyn 73.8 11 0.00024 38.5 7.2 55 438-492 150-204 (318)
141 PRK00784 cobyric acid synthase 73.6 2.1 4.6E-05 46.1 2.3 32 71-106 4-35 (488)
142 TIGR01425 SRP54_euk signal rec 73.2 4.2 9.1E-05 44.1 4.3 35 69-108 100-134 (429)
143 cd01129 PulE-GspE PulE/GspE Th 73.2 4.9 0.00011 40.1 4.5 39 69-113 80-118 (264)
144 TIGR02525 plasmid_TraJ plasmid 73.1 4.6 9.9E-05 42.8 4.5 42 69-114 149-190 (372)
145 PRK15453 phosphoribulokinase; 73.1 4 8.7E-05 42.4 4.0 32 68-104 4-35 (290)
146 PRK09361 radB DNA repair and r 72.7 5.2 0.00011 37.8 4.3 35 67-106 21-55 (225)
147 PF05729 NACHT: NACHT domain 72.5 3.5 7.6E-05 35.5 2.9 25 70-98 1-25 (166)
148 cd02023 UMPK Uridine monophosp 72.1 2.7 5.9E-05 38.8 2.3 22 72-97 2-23 (198)
149 PHA00729 NTP-binding motif con 72.1 2.7 5.9E-05 42.0 2.4 24 71-98 19-42 (226)
150 cd00154 Rab Rab family. Rab G 72.0 20 0.00044 29.9 7.3 63 438-503 90-157 (159)
151 cd01822 Lysophospholipase_L1_l 72.0 63 0.0014 28.4 10.7 106 349-481 24-137 (177)
152 cd00227 CPT Chloramphenicol (C 71.9 3.4 7.4E-05 37.7 2.8 26 69-98 2-27 (175)
153 cd04138 H_N_K_Ras_like H-Ras/N 71.5 20 0.00044 30.5 7.3 53 449-504 105-158 (162)
154 TIGR00676 fadh2 5,10-methylene 71.4 11 0.00024 37.7 6.5 101 352-460 147-261 (272)
155 COG0194 Gmk Guanylate kinase [ 71.4 4.4 9.5E-05 40.0 3.6 46 68-119 3-48 (191)
156 cd00009 AAA The AAA+ (ATPases 71.3 7.4 0.00016 31.7 4.4 27 67-97 17-43 (151)
157 cd01828 sialate_O-acetylestera 71.3 20 0.00044 31.8 7.5 94 364-481 21-126 (169)
158 TIGR00959 ffh signal recogniti 71.3 3.2 6.9E-05 44.8 2.9 35 70-108 100-134 (428)
159 COG0532 InfB Translation initi 71.2 12 0.00027 41.6 7.3 98 376-504 63-166 (509)
160 PLN00043 elongation factor 1-a 71.2 6.4 0.00014 42.3 5.1 77 377-480 94-183 (447)
161 cd00046 DEXDc DEAD-like helica 71.0 3.9 8.4E-05 33.0 2.7 18 81-98 8-25 (144)
162 cd02028 UMPK_like Uridine mono 71.0 4.2 9.2E-05 37.9 3.3 24 71-98 1-24 (179)
163 TIGR00455 apsK adenylylsulfate 70.9 5.5 0.00012 36.5 3.9 33 67-104 16-48 (184)
164 PLN02348 phosphoribulokinase 70.7 5.9 0.00013 42.7 4.6 25 70-98 50-74 (395)
165 PRK05632 phosphate acetyltrans 70.4 3 6.4E-05 47.0 2.5 34 72-110 5-38 (684)
166 COG0529 CysC Adenylylsulfate k 70.1 5.7 0.00012 39.4 4.0 36 67-107 21-56 (197)
167 cd00945 Aldolase_Class_I Class 70.0 27 0.00059 31.3 8.1 62 438-499 98-162 (201)
168 PRK13886 conjugal transfer pro 69.4 6.2 0.00013 39.7 4.2 44 70-118 3-46 (241)
169 TIGR03881 KaiC_arch_4 KaiC dom 69.2 6.9 0.00015 36.9 4.3 35 66-105 17-51 (229)
170 PF00448 SRP54: SRP54-type pro 68.9 4.1 8.9E-05 39.0 2.8 30 71-105 3-32 (196)
171 PF13245 AAA_19: Part of AAA d 68.8 4.6 0.0001 33.3 2.7 25 69-97 10-34 (76)
172 TIGR03420 DnaA_homol_Hda DnaA 68.4 7.9 0.00017 36.0 4.5 42 58-104 27-68 (226)
173 PF13238 AAA_18: AAA domain; P 68.2 4.1 8.9E-05 33.8 2.3 22 72-97 1-22 (129)
174 PF00485 PRK: Phosphoribulokin 67.8 3.5 7.5E-05 38.4 2.0 28 72-104 2-29 (194)
175 PRK13764 ATPase; Provisional 67.6 6.6 0.00014 44.3 4.4 39 68-112 256-294 (602)
176 PF13207 AAA_17: AAA domain; P 67.5 3.1 6.8E-05 34.9 1.5 22 72-97 2-23 (121)
177 PRK14722 flhF flagellar biosyn 67.4 7.6 0.00016 41.4 4.6 33 67-103 135-167 (374)
178 cd04127 Rab27A Rab27a subfamil 67.4 19 0.00042 31.9 6.5 66 437-505 103-174 (180)
179 cd04163 Era Era subfamily. Er 67.2 30 0.00065 29.0 7.4 62 441-504 102-165 (168)
180 cd01866 Rab2 Rab2 subfamily. 67.2 24 0.00053 31.2 7.1 60 438-500 94-158 (168)
181 PF00625 Guanylate_kin: Guanyl 66.8 4.6 9.9E-05 37.2 2.5 43 69-115 2-44 (183)
182 PF13086 AAA_11: AAA domain; P 66.7 4.5 9.8E-05 36.6 2.5 23 71-97 19-41 (236)
183 PF00437 T2SE: Type II/IV secr 66.6 6.7 0.00015 38.1 3.8 39 68-112 126-164 (270)
184 cd04106 Rab23_lke Rab23-like s 66.5 28 0.0006 30.0 7.2 52 449-503 105-158 (162)
185 PRK00049 elongation factor Tu; 66.3 34 0.00075 36.0 9.2 42 438-479 115-162 (396)
186 COG0283 Cmk Cytidylate kinase 66.3 3 6.5E-05 41.9 1.3 18 81-98 12-29 (222)
187 PRK14738 gmk guanylate kinase; 66.2 6.5 0.00014 37.4 3.5 26 65-94 9-34 (206)
188 TIGR00750 lao LAO/AO transport 66.0 9.5 0.00021 38.4 4.8 41 67-112 32-72 (300)
189 PRK12724 flagellar biosynthesi 66.0 7.2 0.00016 42.5 4.2 37 68-108 222-258 (432)
190 PRK00098 GTPase RsgA; Reviewed 65.9 41 0.00089 34.1 9.3 62 439-503 100-162 (298)
191 PRK10512 selenocysteinyl-tRNA- 65.9 19 0.00041 40.6 7.5 64 438-504 91-162 (614)
192 PRK06762 hypothetical protein; 65.6 5.1 0.00011 35.8 2.6 25 69-97 2-26 (166)
193 PRK05703 flhF flagellar biosyn 65.5 8 0.00017 41.5 4.4 26 68-97 220-245 (424)
194 PRK06067 flagellar accessory p 65.2 9.4 0.0002 36.4 4.4 42 66-112 22-64 (234)
195 PRK13974 thymidylate kinase; P 65.1 9.7 0.00021 36.3 4.5 44 68-116 2-49 (212)
196 PRK13975 thymidylate kinase; P 64.7 5.4 0.00012 36.5 2.6 26 69-98 2-27 (196)
197 PRK13946 shikimate kinase; Pro 64.4 4.6 0.0001 37.4 2.1 26 69-98 10-35 (184)
198 PRK04308 murD UDP-N-acetylmura 64.0 8.4 0.00018 40.4 4.2 32 68-106 109-140 (445)
199 cd02034 CooC The accessory pro 63.5 5.7 0.00012 35.1 2.4 42 81-123 7-49 (116)
200 PF02219 MTHFR: Methylenetetra 63.4 2.4 5.2E-05 42.5 0.0 112 353-479 163-287 (287)
201 PRK06547 hypothetical protein; 63.3 5.3 0.00012 37.5 2.3 25 69-97 15-39 (172)
202 PRK14527 adenylate kinase; Pro 63.2 6.3 0.00014 36.5 2.8 28 67-98 4-31 (191)
203 cd01834 SGNH_hydrolase_like_2 63.0 1.1E+02 0.0024 27.1 10.4 117 348-481 18-149 (191)
204 PRK06761 hypothetical protein; 62.9 7.6 0.00017 39.9 3.5 40 69-114 3-42 (282)
205 PRK07259 dihydroorotate dehydr 62.8 50 0.0011 33.1 9.2 34 447-484 88-122 (301)
206 TIGR00036 dapB dihydrodipicoli 62.5 16 0.00035 36.4 5.7 60 438-501 80-139 (266)
207 PRK04663 murD UDP-N-acetylmura 62.1 8.8 0.00019 40.4 3.9 31 69-106 108-138 (438)
208 PRK02006 murD UDP-N-acetylmura 61.4 9.5 0.0002 40.8 4.0 32 69-107 121-152 (498)
209 PRK04040 adenylate kinase; Pro 61.3 6.7 0.00015 37.2 2.6 25 69-97 2-26 (188)
210 cd02029 PRK_like Phosphoribulo 61.2 7.8 0.00017 40.1 3.3 28 72-104 2-29 (277)
211 PRK07667 uridine kinase; Provi 61.2 6.7 0.00014 36.8 2.6 30 69-103 17-46 (193)
212 cd00959 DeoC 2-deoxyribose-5-p 61.0 30 0.00066 33.0 7.0 45 450-495 116-160 (203)
213 PRK03839 putative kinase; Prov 60.9 6.5 0.00014 35.8 2.4 24 71-98 2-25 (180)
214 TIGR03880 KaiC_arch_3 KaiC dom 60.7 13 0.00029 35.1 4.5 40 67-111 14-54 (224)
215 COG1703 ArgK Putative periplas 60.6 12 0.00026 39.6 4.5 38 76-115 55-92 (323)
216 PRK08154 anaerobic benzoate ca 60.5 9.5 0.00021 38.7 3.7 28 67-98 131-158 (309)
217 PLN03025 replication factor C 60.3 7.7 0.00017 39.1 3.0 196 72-291 37-251 (319)
218 PRK09856 fructoselysine 3-epim 60.3 64 0.0014 31.2 9.2 59 428-488 81-150 (275)
219 TIGR02493 PFLA pyruvate format 60.2 38 0.00082 32.2 7.5 43 438-480 144-188 (235)
220 PF13191 AAA_16: AAA ATPase do 60.1 8.5 0.00018 34.1 2.9 31 66-100 21-51 (185)
221 PRK01368 murD UDP-N-acetylmura 60.1 10 0.00022 40.7 3.9 79 69-161 104-184 (454)
222 PRK13210 putative L-xylulose 5 59.8 57 0.0012 31.6 8.7 76 427-503 84-172 (284)
223 TIGR01087 murD UDP-N-acetylmur 59.5 11 0.00023 39.3 3.9 33 68-107 101-133 (433)
224 COG1855 ATPase (PilT family) [ 59.4 12 0.00025 42.0 4.3 47 58-112 254-300 (604)
225 cd00071 GMPK Guanosine monopho 59.1 4.7 0.0001 36.1 1.1 35 81-115 7-41 (137)
226 PF03205 MobB: Molybdopterin g 58.9 19 0.00042 32.7 5.0 48 71-123 2-49 (140)
227 cd01890 LepA LepA subfamily. 58.8 33 0.00071 30.3 6.4 59 447-505 116-174 (179)
228 PRK12289 GTPase RsgA; Reviewed 58.6 35 0.00076 36.0 7.5 63 439-504 109-171 (352)
229 PLN02165 adenylate isopentenyl 58.5 7.4 0.00016 41.1 2.6 29 66-98 40-68 (334)
230 PTZ00327 eukaryotic translatio 58.5 30 0.00066 37.8 7.3 95 377-504 126-229 (460)
231 cd00878 Arf_Arl Arf (ADP-ribos 57.9 40 0.00086 29.1 6.6 56 448-505 98-157 (158)
232 cd04104 p47_IIGP_like p47 (47- 57.7 39 0.00085 31.5 7.0 65 441-505 98-181 (197)
233 TIGR03878 thermo_KaiC_2 KaiC d 57.6 13 0.00028 36.9 4.0 38 67-109 34-72 (259)
234 cd04112 Rab26 Rab26 subfamily. 57.5 31 0.00067 31.6 6.2 54 448-504 104-159 (191)
235 PF01261 AP_endonuc_2: Xylose 57.3 69 0.0015 28.6 8.3 65 427-493 62-138 (213)
236 KOG1970 Checkpoint RAD17-RFC c 57.3 7.4 0.00016 44.1 2.5 31 64-98 105-135 (634)
237 PRK15452 putative protease; Pr 57.3 30 0.00065 37.7 7.0 98 392-502 3-106 (443)
238 COG1213 Predicted sugar nucleo 57.3 20 0.00043 36.6 5.3 55 435-495 30-86 (239)
239 PRK01438 murD UDP-N-acetylmura 57.2 12 0.00026 39.6 3.9 33 68-107 121-153 (480)
240 PRK05439 pantothenate kinase; 57.1 8.8 0.00019 39.9 2.9 42 71-140 88-129 (311)
241 cd01891 TypA_BipA TypA (tyrosi 56.9 48 0.001 30.4 7.4 61 443-504 110-188 (194)
242 cd04136 Rap_like Rap-like subf 56.9 44 0.00095 28.7 6.7 54 449-505 105-160 (163)
243 cd01894 EngA1 EngA1 subfamily. 56.8 41 0.00088 28.5 6.4 58 443-505 98-155 (157)
244 PF06068 TIP49: TIP49 C-termin 56.8 6.9 0.00015 42.3 2.1 46 49-98 28-75 (398)
245 TIGR00708 cobA cob(I)alamin ad 56.8 10 0.00022 36.5 3.1 36 67-108 4-39 (173)
246 cd00561 CobA_CobO_BtuR ATP:cor 56.7 10 0.00022 35.9 3.0 27 80-107 9-35 (159)
247 cd01673 dNK Deoxyribonucleosid 56.4 7.2 0.00016 35.8 1.9 32 71-113 1-32 (193)
248 COG2229 Predicted GTPase [Gene 56.4 29 0.00063 34.3 6.0 30 451-481 122-154 (187)
249 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 55.9 26 0.00056 30.6 5.2 66 436-504 90-160 (166)
250 TIGR03574 selen_PSTK L-seryl-t 55.9 12 0.00026 36.2 3.4 31 71-106 1-31 (249)
251 PF00004 AAA: ATPase family as 55.9 6 0.00013 32.9 1.2 18 81-98 6-23 (132)
252 TIGR00542 hxl6Piso_put hexulos 55.6 78 0.0017 31.0 9.0 76 427-503 84-172 (279)
253 PRK12727 flagellar biosynthesi 55.5 14 0.00031 41.6 4.3 28 67-98 348-375 (559)
254 cd04101 RabL4 RabL4 (Rab-like4 55.4 33 0.00071 29.7 5.7 53 449-504 106-160 (164)
255 cd01897 NOG NOG1 is a nucleola 55.3 46 0.00099 29.0 6.6 53 450-505 113-165 (168)
256 PRK09435 membrane ATPase/prote 55.2 19 0.00041 37.8 4.9 76 29-113 19-95 (332)
257 TIGR00176 mobB molybdopterin-g 55.2 9.8 0.00021 35.1 2.6 27 82-110 8-34 (155)
258 PRK03369 murD UDP-N-acetylmura 55.2 14 0.0003 39.8 4.1 32 69-107 117-148 (488)
259 PLN02840 tRNA dimethylallyltra 55.2 8.4 0.00018 41.8 2.4 28 67-98 19-46 (421)
260 cd01130 VirB11-like_ATPase Typ 55.2 8.8 0.00019 35.7 2.3 27 67-97 23-49 (186)
261 COG0857 Pta BioD-like N-termin 55.2 8.8 0.00019 40.7 2.5 28 77-105 7-34 (354)
262 PRK03803 murD UDP-N-acetylmura 55.0 13 0.00028 39.0 3.8 32 69-107 108-139 (448)
263 PF07005 DUF1537: Protein of u 54.9 12 0.00026 35.6 3.2 67 428-503 10-76 (223)
264 PF00142 Fer4_NifH: 4Fe-4S iro 54.9 8.3 0.00018 39.9 2.2 35 82-117 9-43 (273)
265 PF03215 Rad17: Rad17 cell cyc 54.6 10 0.00022 41.9 3.0 30 65-98 41-70 (519)
266 PRK15455 PrkA family serine pr 54.3 13 0.00028 42.5 3.7 70 47-143 78-152 (644)
267 TIGR02768 TraA_Ti Ti-type conj 54.0 14 0.00031 42.4 4.1 35 69-108 368-402 (744)
268 PLN02748 tRNA dimethylallyltra 54.0 9.4 0.0002 41.9 2.6 40 67-110 20-60 (468)
269 TIGR00554 panK_bact pantothena 53.7 11 0.00024 38.7 3.0 42 71-140 64-105 (290)
270 PRK12723 flagellar biosynthesi 53.7 16 0.00035 39.0 4.2 26 69-98 174-199 (388)
271 PRK08762 molybdopterin biosynt 53.7 56 0.0012 34.1 8.1 83 197-307 94-176 (376)
272 cd01122 GP4d_helicase GP4d_hel 53.7 17 0.00036 35.2 4.0 27 67-97 28-54 (271)
273 TIGR03598 GTPase_YsxC ribosome 53.6 30 0.00065 31.4 5.4 36 444-479 123-162 (179)
274 COG1348 NifH Nitrogenase subun 53.6 11 0.00024 39.0 2.8 41 82-123 10-50 (278)
275 PRK10536 hypothetical protein; 53.6 21 0.00046 36.7 4.8 37 69-110 74-111 (262)
276 KOG0744 AAA+-type ATPase [Post 53.6 10 0.00022 41.0 2.7 27 68-98 176-202 (423)
277 cd00983 recA RecA is a bacter 53.4 15 0.00031 38.6 3.7 69 31-106 10-87 (325)
278 cd02020 CMPK Cytidine monophos 53.4 7.4 0.00016 33.3 1.4 18 81-98 7-24 (147)
279 cd04107 Rab32_Rab38 Rab38/Rab3 53.1 46 0.001 30.7 6.6 55 448-504 108-164 (201)
280 cd00984 DnaB_C DnaB helicase C 53.0 20 0.00044 33.8 4.4 56 66-159 10-65 (242)
281 TIGR00539 hemN_rel putative ox 53.0 47 0.001 34.3 7.3 81 402-486 103-187 (360)
282 cd00881 GTP_translation_factor 53.0 48 0.001 29.1 6.4 63 441-505 105-184 (189)
283 cd03278 ABC_SMC_barmotin Barmo 53.0 10 0.00022 36.0 2.3 58 44-117 5-62 (197)
284 PRK05306 infB translation init 52.8 38 0.00081 39.6 7.2 60 441-504 380-448 (787)
285 cd03110 Fer4_NifH_child This p 52.7 38 0.00083 30.7 5.9 41 440-481 133-173 (179)
286 PF01113 DapB_N: Dihydrodipico 52.5 17 0.00036 32.2 3.5 37 438-477 79-115 (124)
287 PRK01184 hypothetical protein; 52.5 10 0.00022 34.7 2.1 33 70-111 2-37 (184)
288 cd04124 RabL2 RabL2 subfamily. 52.1 71 0.0015 28.2 7.4 65 436-504 88-154 (161)
289 PRK08533 flagellar accessory p 51.9 18 0.00039 35.2 3.9 33 67-104 22-54 (230)
290 COG4240 Predicted kinase [Gene 51.8 12 0.00026 38.8 2.8 34 74-109 52-85 (300)
291 PF01202 SKI: Shikimate kinase 51.7 7.7 0.00017 35.1 1.3 16 83-98 2-17 (158)
292 TIGR03877 thermo_KaiC_1 KaiC d 51.4 21 0.00046 34.5 4.3 40 66-111 18-59 (237)
293 PRK06217 hypothetical protein; 51.4 9.8 0.00021 35.1 1.9 22 72-97 4-25 (183)
294 PLN02772 guanylate kinase 51.3 12 0.00027 40.4 2.9 69 47-119 110-181 (398)
295 cd04115 Rab33B_Rab33A Rab33B/R 51.3 67 0.0015 28.5 7.2 55 449-504 108-165 (170)
296 COG0132 BioD Dethiobiotin synt 51.3 12 0.00026 37.4 2.6 33 70-106 3-35 (223)
297 cd04139 RalA_RalB RalA/RalB su 51.3 65 0.0014 27.5 6.9 65 438-505 92-159 (164)
298 cd03271 ABC_UvrA_II The excisi 51.3 24 0.00051 35.6 4.7 33 67-103 19-52 (261)
299 TIGR01313 therm_gnt_kin carboh 51.0 7.7 0.00017 34.6 1.1 17 81-97 6-22 (163)
300 PRK08084 DNA replication initi 51.0 19 0.00041 35.0 3.9 43 58-105 34-76 (235)
301 PF04055 Radical_SAM: Radical 51.0 35 0.00076 28.8 5.1 39 436-474 126-165 (166)
302 COG1072 CoaA Panthothenate kin 50.9 12 0.00027 38.9 2.7 45 68-139 80-124 (283)
303 PF00910 RNA_helicase: RNA hel 50.8 11 0.00023 32.3 1.9 77 81-168 6-85 (107)
304 PRK14737 gmk guanylate kinase; 50.7 15 0.00033 34.8 3.1 46 67-117 2-47 (186)
305 PRK05506 bifunctional sulfate 50.7 15 0.00033 40.9 3.6 39 67-111 458-496 (632)
306 PRK13833 conjugal transfer pro 50.4 22 0.00047 37.2 4.5 41 69-113 144-184 (323)
307 COG4088 Predicted nucleotide k 50.3 14 0.00031 37.8 3.0 24 71-98 3-26 (261)
308 PRK06995 flhF flagellar biosyn 50.2 21 0.00045 39.5 4.4 32 68-103 255-286 (484)
309 PF02562 PhoH: PhoH-like prote 50.2 17 0.00036 35.8 3.4 40 69-113 19-59 (205)
310 TIGR01448 recD_rel helicase, p 50.1 18 0.00038 41.4 4.0 30 68-102 337-366 (720)
311 cd03114 ArgK-like The function 50.0 18 0.00038 33.1 3.3 32 81-113 7-38 (148)
312 PRK13948 shikimate kinase; Pro 49.8 14 0.0003 35.3 2.7 28 67-98 8-35 (182)
313 smart00174 RHO Rho (Ras homolo 49.8 98 0.0021 27.2 7.9 54 449-504 101-168 (174)
314 PRK09183 transposase/IS protei 49.8 22 0.00047 35.5 4.1 35 67-106 100-134 (259)
315 PRK06526 transposase; Provisio 49.6 10 0.00022 37.9 1.8 70 31-105 55-129 (254)
316 cd00876 Ras Ras family. The R 49.6 55 0.0012 27.7 6.1 65 438-505 91-158 (160)
317 PRK14494 putative molybdopteri 49.4 18 0.0004 36.0 3.6 33 70-107 2-34 (229)
318 cd01863 Rab18 Rab18 subfamily. 49.4 64 0.0014 27.9 6.6 55 448-505 104-159 (161)
319 smart00175 RAB Rab subfamily o 49.4 51 0.0011 28.3 5.9 54 449-505 104-159 (164)
320 smart00173 RAS Ras subfamily o 49.0 87 0.0019 27.1 7.4 54 449-505 104-159 (164)
321 TIGR00126 deoC deoxyribose-pho 49.0 1.1E+02 0.0023 30.3 8.8 47 450-497 117-163 (211)
322 TIGR02109 PQQ_syn_pqqE coenzym 48.9 58 0.0013 33.2 7.1 49 436-485 131-179 (358)
323 PF13173 AAA_14: AAA domain 48.8 17 0.00037 31.6 2.9 26 68-97 1-26 (128)
324 TIGR00313 cobQ cobyric acid sy 48.8 12 0.00026 40.6 2.4 29 77-106 3-31 (475)
325 cd04170 EF-G_bact Elongation f 48.6 45 0.00097 32.7 6.1 42 440-481 106-147 (268)
326 cd01860 Rab5_related Rab5-rela 48.6 72 0.0016 27.5 6.8 54 449-505 105-160 (163)
327 TIGR02012 tigrfam_recA protein 48.6 19 0.00041 37.7 3.7 69 31-106 10-87 (321)
328 TIGR02881 spore_V_K stage V sp 48.5 11 0.00023 37.0 1.8 26 72-102 45-70 (261)
329 PRK04328 hypothetical protein; 48.1 25 0.00055 34.5 4.3 39 67-111 21-61 (249)
330 PRK12339 2-phosphoglycerate ki 47.9 14 0.0003 35.6 2.4 26 68-97 2-27 (197)
331 PRK09354 recA recombinase A; P 47.8 20 0.00043 38.1 3.7 71 30-107 14-93 (349)
332 PTZ00369 Ras-like protein; Pro 47.8 78 0.0017 28.9 7.2 52 449-503 109-162 (189)
333 cd04175 Rap1 Rap1 subgroup. T 47.8 54 0.0012 28.6 5.9 54 449-505 105-160 (164)
334 cd01864 Rab19 Rab19 subfamily. 47.6 74 0.0016 27.9 6.7 65 438-504 96-162 (165)
335 cd01884 EF_Tu EF-Tu subfamily. 47.6 42 0.0009 32.0 5.5 43 438-480 105-153 (195)
336 PRK01390 murD UDP-N-acetylmura 47.5 21 0.00046 37.6 3.9 33 68-107 113-145 (460)
337 PRK02705 murD UDP-N-acetylmura 47.4 22 0.00048 37.2 4.0 34 68-108 108-141 (459)
338 COG1038 PycA Pyruvate carboxyl 47.1 50 0.0011 39.5 6.9 84 402-496 73-174 (1149)
339 PF00682 HMGL-like: HMGL-like 47.0 72 0.0016 30.6 7.1 59 432-490 103-161 (237)
340 PHA02530 pseT polynucleotide k 46.9 13 0.00028 36.5 2.1 24 70-97 3-26 (300)
341 PRK00652 lpxK tetraacyldisacch 46.9 15 0.00033 38.3 2.7 38 70-110 50-87 (325)
342 TIGR01360 aden_kin_iso1 adenyl 46.7 18 0.00039 32.5 2.8 25 69-97 3-27 (188)
343 COG0455 flhG Antiactivator of 46.7 15 0.00033 37.1 2.6 42 81-122 11-55 (262)
344 PRK10078 ribose 1,5-bisphospho 46.7 14 0.0003 34.2 2.1 25 69-97 2-26 (186)
345 cd04113 Rab4 Rab4 subfamily. 46.7 53 0.0011 28.5 5.6 55 447-504 102-158 (161)
346 cd02021 GntK Gluconate kinase 46.7 9.4 0.0002 33.5 1.0 24 71-98 1-24 (150)
347 PRK08939 primosomal protein Dn 46.5 29 0.00064 35.6 4.7 71 31-106 108-188 (306)
348 PRK07952 DNA replication prote 46.4 17 0.00036 36.4 2.8 32 70-106 100-131 (244)
349 COG2909 MalT ATP-dependent tra 46.4 13 0.00029 43.8 2.3 35 57-95 25-59 (894)
350 PRK04690 murD UDP-N-acetylmura 46.3 20 0.00044 38.4 3.6 31 69-106 115-145 (468)
351 COG0467 RAD55 RecA-superfamily 46.3 24 0.00053 34.4 3.9 42 67-113 21-63 (260)
352 PRK13851 type IV secretion sys 46.3 16 0.00034 38.4 2.7 39 67-112 160-198 (344)
353 PRK13947 shikimate kinase; Pro 46.2 11 0.00024 33.7 1.4 23 72-98 4-26 (171)
354 PRK04220 2-phosphoglycerate ki 46.2 18 0.00039 37.8 3.0 37 57-97 80-116 (301)
355 smart00729 Elp3 Elongator prot 46.2 1E+02 0.0022 27.2 7.4 64 437-500 136-201 (216)
356 cd04119 RJL RJL (RabJ-Like) su 46.1 87 0.0019 26.8 6.8 54 449-505 109-164 (168)
357 PRK14493 putative bifunctional 45.7 23 0.00051 36.0 3.7 34 71-111 3-36 (274)
358 COG0552 FtsY Signal recognitio 45.7 31 0.00066 36.9 4.7 36 68-108 138-173 (340)
359 PF06745 KaiC: KaiC; InterPro 45.6 24 0.00052 33.4 3.6 42 67-113 17-60 (226)
360 PRK05986 cob(I)alamin adenolsy 45.5 20 0.00043 35.2 3.1 35 67-107 21-55 (191)
361 PRK00091 miaA tRNA delta(2)-is 45.5 16 0.00034 37.8 2.5 26 69-98 4-29 (307)
362 cd04501 SGNH_hydrolase_like_4 45.4 94 0.002 27.8 7.2 94 364-481 31-140 (183)
363 cd01886 EF-G Elongation factor 45.3 48 0.001 33.3 5.8 24 440-463 106-129 (270)
364 cd01867 Rab8_Rab10_Rab13_like 45.2 86 0.0019 27.7 6.8 53 449-504 107-161 (167)
365 PF13481 AAA_25: AAA domain; P 45.1 21 0.00045 32.4 3.0 27 67-97 30-56 (193)
366 TIGR02034 CysN sulfate adenyly 45.0 43 0.00093 35.4 5.7 25 439-463 121-146 (406)
367 PF02492 cobW: CobW/HypB/UreG, 44.6 30 0.00064 32.1 4.0 35 71-111 2-36 (178)
368 PRK03806 murD UDP-N-acetylmura 44.6 26 0.00055 36.7 3.9 31 69-106 105-135 (438)
369 TIGR01286 nifK nitrogenase mol 44.5 95 0.002 34.5 8.4 181 298-502 58-283 (515)
370 PF02171 Piwi: Piwi domain; I 44.4 47 0.001 32.9 5.6 120 351-479 50-182 (302)
371 PF13401 AAA_22: AAA domain; P 44.4 18 0.00038 30.5 2.3 27 68-98 3-29 (131)
372 PRK00141 murD UDP-N-acetylmura 44.4 22 0.00048 38.1 3.5 31 69-106 121-151 (473)
373 cd00019 AP2Ec AP endonuclease 44.3 86 0.0019 30.6 7.3 67 424-491 72-147 (279)
374 PRK12337 2-phosphoglycerate ki 44.3 18 0.00038 40.1 2.8 28 67-98 253-280 (475)
375 PRK08118 topology modulation p 44.2 12 0.00026 34.7 1.3 23 72-98 4-26 (167)
376 PF02606 LpxK: Tetraacyldisacc 44.2 32 0.0007 35.8 4.6 67 68-148 34-100 (326)
377 PF08303 tRNA_lig_kinase: tRNA 44.2 10 0.00022 36.8 0.8 17 81-97 7-23 (168)
378 TIGR00376 DNA helicase, putati 43.9 18 0.00038 40.9 2.8 34 70-108 174-207 (637)
379 TIGR01278 DPOR_BchB light-inde 43.8 2.1E+02 0.0046 31.4 10.9 156 327-501 22-206 (511)
380 cd01857 HSR1_MMR1 HSR1/MMR1. 43.7 72 0.0016 28.1 6.1 33 449-481 41-73 (141)
381 TIGR03015 pepcterm_ATPase puta 43.5 18 0.00039 34.5 2.5 25 69-97 43-67 (269)
382 PRK02472 murD UDP-N-acetylmura 43.4 27 0.00059 36.4 3.9 31 69-106 108-138 (447)
383 PF13671 AAA_33: AAA domain; P 43.4 12 0.00026 32.1 1.1 23 71-97 1-23 (143)
384 KOG1145 Mitochondrial translat 43.3 41 0.00088 38.6 5.4 125 342-504 161-312 (683)
385 cd04132 Rho4_like Rho4-like su 43.2 1.1E+02 0.0024 27.5 7.3 53 449-503 104-162 (187)
386 cd01881 Obg_like The Obg-like 43.2 76 0.0016 27.6 6.1 54 449-505 119-174 (176)
387 cd04123 Rab21 Rab21 subfamily. 43.2 91 0.002 26.5 6.5 58 444-504 99-158 (162)
388 TIGR02782 TrbB_P P-type conjug 43.0 33 0.00073 35.0 4.4 40 68-112 131-171 (299)
389 PF12774 AAA_6: Hydrolytic ATP 42.9 12 0.00027 37.0 1.3 71 80-160 39-112 (231)
390 TIGR02880 cbbX_cfxQ probable R 42.9 15 0.00032 37.0 1.9 28 71-103 60-87 (284)
391 PRK00683 murD UDP-N-acetylmura 42.8 30 0.00064 36.3 4.1 80 68-161 101-184 (418)
392 PHA02096 hypothetical protein 42.7 20 0.00043 31.8 2.3 35 427-461 40-76 (103)
393 cd01892 Miro2 Miro2 subfamily. 42.6 66 0.0014 28.9 5.8 53 449-503 107-161 (169)
394 PF13555 AAA_29: P-loop contai 42.6 33 0.00071 28.1 3.4 43 44-97 5-47 (62)
395 smart00072 GuKc Guanylate kina 42.5 24 0.00052 32.7 3.0 48 68-119 1-48 (184)
396 PF00931 NB-ARC: NB-ARC domain 42.3 25 0.00054 33.8 3.2 27 67-97 17-43 (287)
397 cd07937 DRE_TIM_PC_TC_5S Pyruv 42.2 90 0.002 31.4 7.2 54 436-489 117-172 (275)
398 TIGR03471 HpnJ hopanoid biosyn 42.2 50 0.0011 35.3 5.7 76 402-481 290-368 (472)
399 PRK09825 idnK D-gluconate kina 42.1 21 0.00046 33.4 2.7 26 68-97 2-27 (176)
400 PRK05301 pyrroloquinoline quin 41.9 83 0.0018 32.5 7.1 50 436-486 140-189 (378)
401 cd02019 NK Nucleoside/nucleoti 41.8 16 0.00034 29.1 1.5 17 81-97 7-23 (69)
402 PRK14106 murD UDP-N-acetylmura 41.7 29 0.00062 36.2 3.8 31 69-106 108-138 (450)
403 cd04130 Wrch_1 Wrch-1 subfamil 41.7 1.5E+02 0.0032 26.4 7.8 54 449-504 103-170 (173)
404 PF10662 PduV-EutP: Ethanolami 41.6 65 0.0014 30.3 5.7 55 447-503 86-141 (143)
405 PRK04213 GTP-binding protein; 41.6 1.2E+02 0.0026 27.7 7.3 57 444-504 124-188 (201)
406 PRK04165 acetyl-CoA decarbonyl 41.6 43 0.00094 36.8 5.2 46 437-487 188-233 (450)
407 TIGR00157 ribosome small subun 41.4 90 0.0019 30.8 7.0 106 364-503 5-118 (245)
408 cd01854 YjeQ_engC YjeQ/EngC. 41.1 71 0.0015 32.2 6.3 63 438-503 97-159 (287)
409 COG1224 TIP49 DNA helicase TIP 41.1 23 0.0005 38.8 3.0 28 67-98 63-90 (450)
410 cd04122 Rab14 Rab14 subfamily. 41.0 95 0.0021 27.3 6.4 52 445-499 102-155 (166)
411 TIGR02173 cyt_kin_arch cytidyl 41.0 13 0.00029 32.8 1.1 24 71-98 2-25 (171)
412 PRK13900 type IV secretion sys 40.8 26 0.00057 36.5 3.3 37 68-111 159-195 (332)
413 cd07939 DRE_TIM_NifV Streptomy 40.7 1.2E+02 0.0026 30.0 7.7 57 433-489 106-162 (259)
414 PRK00421 murC UDP-N-acetylmura 40.7 30 0.00065 36.6 3.8 29 69-104 107-135 (461)
415 cd07944 DRE_TIM_HOA_like 4-hyd 40.7 91 0.002 31.4 7.0 54 436-489 108-161 (266)
416 cd01865 Rab3 Rab3 subfamily. 40.6 1.7E+02 0.0036 25.8 7.9 53 449-504 105-159 (165)
417 TIGR03822 AblA_like_2 lysine-2 40.5 90 0.002 32.2 7.1 49 437-485 214-264 (321)
418 cd01868 Rab11_like Rab11-like. 40.5 74 0.0016 27.7 5.6 54 449-505 107-162 (165)
419 cd01859 MJ1464 MJ1464. This f 40.4 1.2E+02 0.0025 26.9 6.9 55 447-504 38-92 (156)
420 PRK14489 putative bifunctional 40.4 33 0.00071 35.8 4.0 36 70-111 206-241 (366)
421 cd04171 SelB SelB subfamily. 40.3 1.3E+02 0.0027 25.8 6.9 55 446-503 99-161 (164)
422 cd01121 Sms Sms (bacterial rad 40.3 40 0.00086 35.8 4.6 36 67-107 80-115 (372)
423 PRK05537 bifunctional sulfate 40.1 28 0.00062 38.9 3.6 40 67-111 390-429 (568)
424 KOG1533 Predicted GTPase [Gene 40.0 27 0.00058 36.4 3.1 31 81-112 10-40 (290)
425 COG3265 GntK Gluconate kinase 40.0 14 0.00031 35.7 1.2 18 81-98 3-20 (161)
426 PRK09302 circadian clock prote 39.9 39 0.00084 36.5 4.5 41 67-112 29-71 (509)
427 TIGR02640 gas_vesic_GvpN gas v 39.9 22 0.00048 35.1 2.5 26 68-97 20-45 (262)
428 cd01861 Rab6 Rab6 subfamily. 39.8 91 0.002 26.8 6.0 67 436-505 88-159 (161)
429 PRK14334 (dimethylallyl)adenos 39.8 55 0.0012 35.0 5.6 91 401-494 236-332 (440)
430 PLN02200 adenylate kinase fami 39.8 26 0.00057 34.4 3.0 27 68-98 42-68 (234)
431 COG0703 AroK Shikimate kinase 39.7 15 0.00033 35.5 1.3 24 70-98 4-27 (172)
432 PRK08195 4-hyroxy-2-oxovalerat 39.7 98 0.0021 32.4 7.2 52 438-489 116-167 (337)
433 PF01695 IstB_IS21: IstB-like 39.6 25 0.00054 33.1 2.7 34 68-106 46-79 (178)
434 cd01895 EngA2 EngA2 subfamily. 39.4 1.2E+02 0.0027 25.8 6.7 60 444-506 107-173 (174)
435 COG0572 Udk Uridine kinase [Nu 39.4 21 0.00045 35.8 2.2 26 69-98 8-33 (218)
436 cd04160 Arfrp1 Arfrp1 subfamil 39.3 1E+02 0.0022 26.8 6.3 55 448-504 105-165 (167)
437 KOG3022 Predicted ATPase, nucl 39.2 28 0.00061 36.6 3.2 49 71-123 49-100 (300)
438 TIGR01082 murC UDP-N-acetylmur 39.1 29 0.00063 36.6 3.4 28 69-103 99-126 (448)
439 cd04118 Rab24 Rab24 subfamily. 39.1 1.3E+02 0.0027 27.3 7.1 64 438-504 91-162 (193)
440 cd04176 Rap2 Rap2 subgroup. T 39.1 98 0.0021 26.8 6.1 64 438-504 93-159 (163)
441 COG3839 MalK ABC-type sugar tr 39.1 19 0.00042 38.1 2.1 21 67-91 27-47 (338)
442 PRK09270 nucleoside triphospha 39.1 25 0.00054 33.8 2.7 28 67-98 31-58 (229)
443 cd01393 recA_like RecA is a b 38.9 38 0.00082 31.7 3.8 28 66-97 16-43 (226)
444 PRK13361 molybdenum cofactor b 38.9 90 0.0019 31.9 6.7 54 438-492 141-195 (329)
445 PRK00507 deoxyribose-phosphate 38.8 1.1E+02 0.0025 30.2 7.2 35 464-498 134-168 (221)
446 PRK01710 murD UDP-N-acetylmura 38.8 31 0.00068 36.6 3.6 31 69-106 117-147 (458)
447 PLN02199 shikimate kinase 38.7 21 0.00046 37.4 2.3 28 67-98 100-127 (303)
448 cd01983 Fer4_NifH The Fer4_Nif 38.6 1E+02 0.0022 23.7 5.6 35 364-403 35-69 (99)
449 COG1936 Predicted nucleotide k 38.5 16 0.00035 35.8 1.3 27 71-106 2-28 (180)
450 PRK00048 dihydrodipicolinate r 38.5 1.1E+02 0.0024 30.3 7.2 60 439-504 73-132 (257)
451 PRK08760 replicative DNA helic 38.5 1.4E+02 0.0031 32.6 8.5 43 58-104 217-260 (476)
452 TIGR03594 GTPase_EngA ribosome 38.5 1.2E+02 0.0026 31.5 7.6 58 443-503 276-339 (429)
453 PRK12377 putative replication 38.4 26 0.00057 35.1 2.8 36 69-110 101-136 (248)
454 cd01120 RecA-like_NTPases RecA 38.4 37 0.00081 28.8 3.4 18 81-98 7-24 (165)
455 PRK12736 elongation factor Tu; 38.2 1.2E+02 0.0026 31.9 7.7 53 438-490 115-177 (394)
456 PRK11545 gntK gluconate kinase 38.1 17 0.00037 33.3 1.4 18 81-98 3-20 (163)
457 cd04120 Rab12 Rab12 subfamily. 37.9 1.2E+02 0.0026 28.9 7.1 53 449-504 104-159 (202)
458 KOG1144 Translation initiation 37.7 38 0.00083 40.1 4.2 54 376-459 548-601 (1064)
459 TIGR01359 UMP_CMP_kin_fam UMP- 37.5 17 0.00037 32.8 1.3 23 72-98 2-24 (183)
460 COG0274 DeoC Deoxyribose-phosp 37.5 1.5E+02 0.0033 30.3 7.9 43 456-498 130-172 (228)
461 cd01918 HprK_C HprK/P, the bif 37.4 26 0.00057 33.0 2.5 25 68-96 13-37 (149)
462 TIGR03217 4OH_2_O_val_ald 4-hy 37.3 1.1E+02 0.0024 32.0 7.2 52 438-489 115-166 (333)
463 cd00882 Ras_like_GTPase Ras-li 37.2 1.4E+02 0.003 23.9 6.3 62 440-504 92-156 (157)
464 TIGR01499 folC folylpolyglutam 37.1 30 0.00065 35.9 3.0 37 70-114 19-55 (397)
465 PRK04841 transcriptional regul 37.0 22 0.00048 39.9 2.2 51 58-116 21-71 (903)
466 cd04169 RF3 RF3 subfamily. Pe 36.9 87 0.0019 31.4 6.2 23 441-463 114-136 (267)
467 PLN02881 tetrahydrofolylpolygl 36.7 2.1E+02 0.0045 32.3 9.6 86 364-486 159-244 (530)
468 PRK04182 cytidylate kinase; Pr 36.7 17 0.00037 32.3 1.0 23 71-97 2-24 (180)
469 PF00580 UvrD-helicase: UvrD/R 36.7 19 0.00041 34.4 1.4 34 454-488 259-292 (315)
470 TIGR01085 murE UDP-N-acetylmur 36.5 38 0.00083 35.8 3.8 32 68-106 84-115 (464)
471 TIGR01969 minD_arch cell divis 36.5 1.1E+02 0.0023 28.8 6.4 24 440-463 149-173 (251)
472 PRK05973 replicative DNA helic 36.4 45 0.00097 33.5 4.1 41 67-112 62-103 (237)
473 cd01870 RhoA_like RhoA-like su 36.4 2.2E+02 0.0049 24.9 8.0 54 449-504 104-171 (175)
474 cd01879 FeoB Ferrous iron tran 36.4 83 0.0018 26.8 5.2 56 446-504 97-153 (158)
475 TIGR01125 MiaB-like tRNA modif 36.3 80 0.0017 33.5 6.1 81 402-485 235-321 (430)
476 cd04144 Ras2 Ras2 subfamily. 36.3 1.9E+02 0.0042 26.4 7.9 53 449-504 105-159 (190)
477 PF05970 PIF1: PIF1-like helic 36.3 48 0.001 34.5 4.4 35 67-106 20-54 (364)
478 TIGR00630 uvra excinuclease AB 36.2 31 0.00067 40.9 3.3 26 67-96 20-45 (924)
479 PRK08727 hypothetical protein; 36.1 26 0.00057 34.0 2.3 32 69-105 41-72 (233)
480 TIGR01081 mpl UDP-N-acetylmura 36.1 28 0.0006 36.8 2.7 29 70-105 103-131 (448)
481 PRK13209 L-xylulose 5-phosphat 35.9 2.6E+02 0.0057 27.2 9.1 61 426-488 88-159 (283)
482 PRK12288 GTPase RsgA; Reviewed 35.8 1.1E+02 0.0023 32.4 6.8 64 438-504 138-204 (347)
483 TIGR02729 Obg_CgtA Obg family 35.7 1.7E+02 0.0036 30.5 8.1 53 449-504 272-325 (329)
484 KOG1207 Diacetyl reductase/L-x 35.5 42 0.00091 33.9 3.6 36 68-112 6-41 (245)
485 cd01832 SGNH_hydrolase_like_1 35.5 2.3E+02 0.0049 25.3 8.0 51 427-481 85-147 (185)
486 PRK05283 deoxyribose-phosphate 35.4 1.3E+02 0.0029 30.9 7.3 45 450-494 131-175 (257)
487 KOG0483 Transcription factor H 35.3 25 0.00055 34.8 2.1 44 183-229 50-94 (198)
488 cd02027 APSK Adenosine 5'-phos 35.1 32 0.0007 31.1 2.6 25 81-106 7-31 (149)
489 cd04116 Rab9 Rab9 subfamily. 34.9 1.2E+02 0.0025 26.6 6.0 55 449-505 113-168 (170)
490 PRK10773 murF UDP-N-acetylmura 34.8 36 0.00078 36.2 3.3 32 66-104 97-128 (453)
491 PRK14336 (dimethylallyl)adenos 34.8 1.5E+02 0.0032 31.8 7.8 131 349-483 157-308 (418)
492 PLN02540 methylenetetrahydrofo 34.8 39 0.00085 38.2 3.7 103 364-480 171-285 (565)
493 PRK11889 flhF flagellar biosyn 34.7 30 0.00066 38.0 2.7 35 69-108 241-275 (436)
494 PRK12402 replication factor C 34.6 28 0.00061 34.3 2.3 24 71-98 38-61 (337)
495 PRK08691 DNA polymerase III su 34.6 9.9 0.00021 43.9 -0.9 73 422-495 573-657 (709)
496 COG1484 DnaC DNA replication p 34.4 34 0.00073 34.2 2.8 39 68-112 104-142 (254)
497 CHL00071 tufA elongation facto 34.4 78 0.0017 33.5 5.6 43 438-480 115-163 (409)
498 PRK13894 conjugal transfer ATP 34.3 52 0.0011 34.2 4.3 41 68-112 147-187 (319)
499 TIGR02495 NrdG2 anaerobic ribo 34.3 90 0.002 28.7 5.4 41 438-479 141-183 (191)
500 PF01297 TroA: Periplasmic sol 34.2 1.5E+02 0.0032 28.8 7.1 81 419-501 117-219 (256)
No 1
>PLN02759 Formate--tetrahydrofolate ligase
Probab=100.00 E-value=6.4e-238 Score=1854.71 Aligned_cols=502 Identities=86% Similarity=1.311 Sum_probs=494.0
Q ss_pred CCCccccccCCCCCChHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeechhhhhhhcCCCCCcEEEEeccCCCCCC
Q 010555 4 SKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLG 83 (507)
Q Consensus 4 ~~~~~~l~~~~pm~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~~kAKi~l~~l~~~~~~~~GklIlVTaitPTP~G 83 (507)
+.+-.++.++.||||||||||+++++||++||+++||++|+|||||+|||||+++++++++++|+|||||||||||||+|
T Consensus 4 ~~~~~~~~~~~~~~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~ykAKi~l~~l~~~~~~~~gklIlVTaitPTP~G 83 (637)
T PLN02759 4 SSSRRKLEVKSPVPADIDIAQSVEPLHISEIAKALGLLPDEYDLYGKYKAKVLLSVRDRLAGAPDGYYVVVAGITPTPLG 83 (637)
T ss_pred cCCCCCCCCCCCCCCHHHHHhhCCCcCHHHHHHHcCCChhhhccCCCcceEEcHHHHhhhccCCCCcEEEEEecCCCCCC
Confidence 44556778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhh
Q 010555 84 EGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTR 163 (507)
Q Consensus 84 EGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaA~NLlaA~iDn~ 163 (507)
||||||||||+|||++|+||++++|||||||||||||||||||||||||+|||||||||||||||||||||||+|+||||
T Consensus 84 EGKTTttIGL~~aL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~ 163 (637)
T PLN02759 84 EGKSTTTIGLCQALGAYLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLLAAAIDTR 163 (637)
T ss_pred CCchhHHHHHHHHHHHHhCCeeEEEeecCCcCCcCCcccccCCCcccccccHhhhcccccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999656999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeecccccccccc
Q 010555 164 IFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLR 243 (507)
Q Consensus 164 i~~~n~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR 243 (507)
|||||+|+|++||+||||..++|+|+|+++|+|||+||||+|||||+||||||++|++|+|||++|+|+||||||||+||
T Consensus 164 i~~~n~~~~~~l~~~l~p~~~~~~r~~~~~~~~rl~~l~i~~~~p~~lt~~e~~~~~~L~IDp~~I~w~RvlD~NDR~LR 243 (637)
T PLN02759 164 VFHEATQSDKALFNRLCPANKEGKRSFAAVMFRRLKKLGISKTDPDELTPEERKKFARLDIDPASITWRRVMDVNDRFLR 243 (637)
T ss_pred HhhccccchhhhhhccccccccccccccHHHHHHHHhhccCcCCccccCHHHhhhhhccCcCcceeEEEeeccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCCCCCcceecceeeeehhhHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcc
Q 010555 244 KITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPT 323 (507)
Q Consensus 244 ~I~iGlg~~~~G~~re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkdAikPN 323 (507)
+|+||+|++++|+|||+|||||||||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||
T Consensus 244 ~I~vGlgg~~~G~~Re~gFdITvASEiMAILcLa~dl~Dlk~Rlg~ivvg~~~~g~pVta~DL~~~GAmt~LLkDAikPN 323 (637)
T PLN02759 244 KITVGQGPEEKGMTRETGFDITVASEIMAVLALTTSLADMRERLGKMVIGNSKAGEPVTADDLGVGGALTVLMKDAIHPT 323 (637)
T ss_pred ceeeCcCCCCCCCcccCCceeeHHHHHHHHHHHcCCHHHHHHHHhCEEEEEcCCCCceeHHHcCchHhHHHHHHhhhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCceeEEeccCcccccccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeeh
Q 010555 324 LMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIR 403 (507)
Q Consensus 324 LvQTlEgtPa~VHgGPFANIAhG~nSviAtk~ALklag~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvR 403 (507)
||||+|||||||||||||||||||||||||++||||+|.+||||||||||||||||||||||||.+||+|||+|||||||
T Consensus 324 LvQTlEgtPa~vHgGPFANIAhG~nSviAtk~ALkla~~~dyvVTEAGFGaDlGaEKF~dIkcR~~gl~P~a~VlVaTvR 403 (637)
T PLN02759 324 LMQTLEGTPVLVHAGPFANIAHGNSSIVADQIALKLVGPGGFVVTEAGFGADIGTEKFMNIKCRYSGLKPQCAVIVATVR 403 (637)
T ss_pred ceeecCCCceEEecCCcccccccchHHHHHHHHHhhcCCCCeEEEecccCCCCchhheecccccccCCCCCEEEEEeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeE
Q 010555 404 ALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDA 483 (507)
Q Consensus 404 ALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~ 483 (507)
|||||||++.++||+|||++|.+||+++|++||+||.|||+|+++||+|||||||+|++||++||++|+++|+++|+.++
T Consensus 404 ALK~hGG~~~~~pg~~l~~~l~~enl~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~v~~~~~~~ga~~~ 483 (637)
T PLN02759 404 ALKMHGGGPAVVAGKPLDHAYTTENVELVEAGCVNLARHIENTKSYGVNVVVAINMFATDTEAELEAVRQAALAAGAFDA 483 (637)
T ss_pred HHHhcCCCCcccCCccchhhhcccCHHHHHhhhhhHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996459
Q ss_pred EEccccccCchhhHHHHHhhhh
Q 010555 484 VVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 484 ~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
++|+||++||+|++|||++|++
T Consensus 484 ~~~~~wa~GGeGa~eLA~~Vv~ 505 (637)
T PLN02759 484 VLCTHHAHGGKGAVDLGEAVQK 505 (637)
T ss_pred EEechhhcccHHHHHHHHHHHH
Confidence 9999999999999999999985
No 2
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=100.00 E-value=2.8e-232 Score=1809.15 Aligned_cols=488 Identities=66% Similarity=1.010 Sum_probs=477.8
Q ss_pred CccccccCCCCCChHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeechhhhhhhcCCCCCcEEEEeccCCCCCCCC
Q 010555 6 TVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEG 85 (507)
Q Consensus 6 ~~~~l~~~~pm~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~~kAKi~l~~l~~~~~~~~GklIlVTaitPTP~GEG 85 (507)
+..++.++.||||||||||+++++||++||+++||++|||||||+|||||+++++++++++|+|||||||||||||+|||
T Consensus 5 ~~~~~~~~~~~~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~ykAKv~l~~~~~~~~~~~gklIlVTaitPTP~GEG 84 (625)
T PTZ00386 5 TTRKLSCQWPVPSDIDIAQSVKPQPITSVAESAGILLSELDPYGSTRAKVKLSVLKRLENSPNGKYVVVAGMNPTPLGEG 84 (625)
T ss_pred CCCCCCCCCCCCCHHHHHhhCCCcCHHHHHHHcCCCHHHHHhcCCcceecCHHHHHhhccCCCCcEEEEeecCCCCCCCC
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhh
Q 010555 86 KSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIF 165 (507)
Q Consensus 86 KTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaA~NLlaA~iDn~i~ 165 (507)
||||||||+|||++|+||++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+||||||
T Consensus 85 KtTttIGL~~aL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~HAItaA~NLlaA~iDn~i~ 164 (625)
T PTZ00386 85 KSTTTIGLAQSLGAHLHRKTFACIRQPSQGPTFGIKGGAAGGGYSQVIPMEDFNLHGTGDIHAITAANNLLAAALDTRIF 164 (625)
T ss_pred ccchhhhhHHHHHHHhCcceEEEEecCCcCCcCCcccccCCCccccccchhhccccccchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999965999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccce
Q 010555 166 HEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKI 245 (507)
Q Consensus 166 ~~n~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I 245 (507)
|||+|+|++||+||| +|+|+|+++|++||+||||.|+||++||||||++|++|+|||++|+|+||||||||+||+|
T Consensus 165 ~~n~~~d~~l~~~l~----~~~r~~~~~~~~rl~~lgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I 240 (625)
T PTZ00386 165 HERTQSDAALYRRLT----DELKKFTPIMLKRLEKLGISKTDPKQLTEEERVRFARLDIDPDTISWRRVTDVNDRMLREI 240 (625)
T ss_pred hccccchhHHHhhhc----cccccccHHHHHHHHhhccCcCCccccCHHHhhhhhhcCcCcceeEEEeeccccchhhhce
Confidence 999999999999999 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCcceecceeeeehhhHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccc
Q 010555 246 TIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLM 325 (507)
Q Consensus 246 ~iGlg~~~~G~~re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkdAikPNLv 325 (507)
+||+|++++|+|||||||||||||||||||||+|++|||+|||||||||++||+||||+||+++||||+|||||||||||
T Consensus 241 ~vGlG~~~~G~~Re~gFdITvASEiMAIl~La~dl~Dlr~Rlg~ivva~~~~g~pVta~DL~~~GAmt~LLkDAikPNLv 320 (625)
T PTZ00386 241 TIGQGKEEKGITRKTGFDISVASEVMAILALATDLADMRQRLGAIVVAKSKSGEPVTAEDLGCAGAMTVLMKDTIEPTLM 320 (625)
T ss_pred eeCcCCCCCCCcccCCceeEHHHHHHHHHHHhCCHHHHHHHHhceeeeecCCCCceeHHHcCchHHHHHHHHhhccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCceeEEeccCcccccccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHH
Q 010555 326 QTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRAL 405 (507)
Q Consensus 326 QTlEgtPa~VHgGPFANIAhG~nSviAtk~ALklag~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvRAL 405 (507)
||+|||||||||||||||||||||||||++||||+|.+||||||||||||||||||||||||.|||+|||+|||||||||
T Consensus 321 QTlEgtPa~VHgGPFANIAhG~nSviAt~~ALkla~~~dyvVTEAGFGaDlGaEKF~dIkcR~sgl~P~a~VlVaTvRAL 400 (625)
T PTZ00386 321 QTLEGTPVLVHAGPFGNIAHGNSSIVADQIALKLAGQDGFVLTEAGFGADIGCEKFFNIKCRTSGLKPDAAVLVATVRAL 400 (625)
T ss_pred eecCCCceEEecCCcchhhcccHHHHHHHHHHHhCCCCCeEEEeccccCCCCchhhccccccccCCCcCEEEEEeehHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHH-HcCCCeEE
Q 010555 406 KMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAM-AAGAFDAV 484 (507)
Q Consensus 406 K~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~-~~G~~~~~ 484 (507)
|||||++... +.+||+++|++||+||.|||+|+++||+|||||||+|++||++||++|+++|+ ++|+.+++
T Consensus 401 K~hGG~~~~~--------l~~enl~al~~G~~NL~~Hien~~~fgvpvVVAIN~F~tDT~~Ei~~i~~~~~~~~ga~~~~ 472 (625)
T PTZ00386 401 KFHGGVEPVV--------AGKENLEAVRKGLSNLQRHIQNIRKFGVPVVVALNKFSTDTDAELELVKELALQEGGAADVV 472 (625)
T ss_pred HHhCCCCccc--------cCccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHhcCCccEE
Confidence 9999998754 45799999999999999999999999999999999999999999999999999 99964599
Q ss_pred EccccccCchhhHHHHHhhhh
Q 010555 485 VCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 485 ~s~~wa~GGeGa~~LA~~v~~ 505 (507)
+|+||++||+|++|||++|++
T Consensus 473 ~s~~~a~GG~Ga~eLA~~Vv~ 493 (625)
T PTZ00386 473 VTDHWAKGGAGAVDLAQALIR 493 (625)
T ss_pred EechhhccchhHHHHHHHHHH
Confidence 999999999999999999975
No 3
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=4.6e-220 Score=1709.82 Aligned_cols=451 Identities=53% Similarity=0.818 Sum_probs=443.2
Q ss_pred ccCCCCCChHHHHccCC--CCCHHHHHHHcCCCCcccccccCceeeechh-hhhhhcCCCCCcEEEEeccCCCCCCCCcc
Q 010555 11 QVVSPVPADIDIANSVE--PLHISEIAQELNLKPNHYDLYGKYKAKVLLS-VLDELEGSADGYYVVVGGITPTPLGEGKS 87 (507)
Q Consensus 11 ~~~~pm~sDieIa~~~~--~~~I~~iA~~lgl~~~~le~YG~~kAKi~l~-~l~~~~~~~~GklIlVTaitPTP~GEGKT 87 (507)
+++.|+||||||||+++ ++||++||+++||++|+|||||+|||||+++ ++++++++|+|||||||||||||+|||||
T Consensus 2 ~~~~~~~sdieIa~~~~~~~~~I~~ia~~lgl~~~~le~YG~~kAKi~l~~~l~~~~~~~~gklIlVTaitPTP~GEGKt 81 (587)
T PRK13507 2 ALDPTKMKDWEIAEEAEKFMKPVEELAEELGLTKEELLPYGHYIAKVDFRKVLDRLKDRPDGKYIDVTAITPTPLGEGKS 81 (587)
T ss_pred CCCCCCCCHHHHHHhhhccCCCHHHHHHHcCCCHHHHHhcCCcceeecHHHHHHhhccCCCCeEEEEeccCCCCCCCCcc
Confidence 45779999999999999 8899999999999999999999999999998 89999988999999999999999999999
Q ss_pred hhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhcc
Q 010555 88 TTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHE 167 (507)
Q Consensus 88 TttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaA~NLlaA~iDn~i~~~ 167 (507)
||||||+|||+ ++||++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||+
T Consensus 82 TttIGL~~aL~-~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAitaA~NLlaA~idn~i~~~ 160 (587)
T PRK13507 82 TTTMGLVQGLG-KRGKKVSGAIRQPSGGPTMNIKGSAAGGGLSQCIPLTPFSLGLTGDINAIMNAHNLAMVALTARMQHE 160 (587)
T ss_pred chhhhHHHHHH-hhcCceEEEEecCCcCCcCCcccccCCCccccccchhhccccccChHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999995 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceee
Q 010555 168 ASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITI 247 (507)
Q Consensus 168 n~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~i 247 (507)
|+|+|++|+.| .|++|+|||++|+|+||||||||+||+|+|
T Consensus 161 n~~~~~~l~~~---------------------------------------~~~~L~IDp~~I~w~RvlD~NDR~LR~I~v 201 (587)
T PRK13507 161 RNYTDEQLARR---------------------------------------GLKRLDIDPTRVEMGWIIDFCAQALRNIII 201 (587)
T ss_pred Cccccchhhcc---------------------------------------cccccCCCcceeeEeecccccchhhhceee
Confidence 99999998754 377999999999999999999999999999
Q ss_pred ccCCCCCCcceecceeeeehhhHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCccccee
Q 010555 248 GQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQT 327 (507)
Q Consensus 248 Glg~~~~G~~re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkdAikPNLvQT 327 (507)
|+|++.+|+|||||||||||||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||
T Consensus 202 GlG~~~~G~~Re~gFdITvASEiMAIlcLa~~l~Dlk~Rlg~ivva~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQT 281 (587)
T PRK13507 202 GIGGKTDGYMMQSGFGIAVSSEVMAILSVATDLKDLRERIGKIVVAYDKNGKPVTTADLEVDGAMTAWMVRAINPNLLQT 281 (587)
T ss_pred CcCCCCCCccccCCceeeHHHHHHHHHHHcCCHHHHHHHHhcEEEEEcCCCCeeeHHhccchHhHHHHHHhhcCcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCceeEEeccCcccccccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHh
Q 010555 328 LEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKM 407 (507)
Q Consensus 328 lEgtPa~VHgGPFANIAhG~nSviAtk~ALklag~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvRALK~ 407 (507)
+||||||||||||||||||||||||||+||||+ ||||||||||||||||||||||||.+|++|||+|||||||||||
T Consensus 282 lEgtPa~vHgGPFANIAHG~nSviAt~~ALkla---dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~ 358 (587)
T PRK13507 282 IEGQPVFVHAGPFANIAIGQSSIIADRVGLKLA---DYHVTESGFGADIGFEKFWNLKCRLSGLKPDCAVIVATIRALKM 358 (587)
T ss_pred cCCCceEEecCCcchhhcccHHHHHHHHHHhcC---CeEEeccccCCCCChhheeeeeccccCCCCCEEEEEeEhHHHHH
Confidence 999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcc
Q 010555 408 HGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 408 HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~ 487 (507)
|||++...+|+|||++|.+||+++|++||+||.|||+|+++||+|||||||+|++||++||++|+++|++.|+. +++|+
T Consensus 359 hgG~~~~~~g~~l~~~l~~enl~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~l~~~~~~~g~~-~~v~~ 437 (587)
T PRK13507 359 HGGGPKVVPGKPLPEEYTKENVGLVEKGCANLLHHIGTVKKSGINPVVCINAFYTDTHAEIAIVRRLAEQAGAR-VAVSR 437 (587)
T ss_pred cCCCCccccCCccchhccccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCHHHHHHHHHHHHHcCCC-EEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996 89999
Q ss_pred ccccCchhhHHHHHhhhh
Q 010555 488 HHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 488 ~wa~GGeGa~~LA~~v~~ 505 (507)
||++||+|++|||++|+.
T Consensus 438 ~wa~GGeGa~eLA~~Vv~ 455 (587)
T PRK13507 438 HWEKGGEGALELADAVID 455 (587)
T ss_pred hhhccchhHHHHHHHHHH
Confidence 999999999999999985
No 4
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.5e-216 Score=1678.55 Aligned_cols=498 Identities=66% Similarity=1.055 Sum_probs=492.3
Q ss_pred CccccccCCCCCChHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeechhhhhhhcCCCCCcEEEEeccCCCCCCCC
Q 010555 6 TVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEG 85 (507)
Q Consensus 6 ~~~~l~~~~pm~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~~kAKi~l~~l~~~~~~~~GklIlVTaitPTP~GEG 85 (507)
.+.||.+++|+||||||||+++|++|.++|+++||.++|||.||+|||||++++++||+.+++||||+||+|||||+|||
T Consensus 302 ~~~pl~l~tpvpsdidisrsq~pk~i~~la~e~gi~s~ele~yg~~kakv~l~v~erl~hr~dg~yvvvsgitptp~geg 381 (935)
T KOG4230|consen 302 DLLPLKLKTPVPSDIDISRSQEPKLIGQLAKELGIYSHELELYGHYKAKVNLAVLERLKHRKDGKYVVVSGITPTPLGEG 381 (935)
T ss_pred CCCccccCCCCCcccchhhccCcchHHHHHHHhchhhHHHHhhcchhhhcCHHHHHHHhccCCCcEEEEeccCCCCCCCC
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhh
Q 010555 86 KSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIF 165 (507)
Q Consensus 86 KTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaA~NLlaA~iDn~i~ 165 (507)
|||||+||.|||+ +|||.+++|+||||+|||||+|||||||||||||||||||||+||||||||||||||+|+||+|||
T Consensus 382 kst~t~glvqal~-~l~k~~iacvrqpsqgptfgvkggaagggysq~ipmdefnlhltgdihaitaannllaaaidtrmf 460 (935)
T KOG4230|consen 382 KSTTTAGLVQALG-ALGKLAIACVRQPSQGPTFGVKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRMF 460 (935)
T ss_pred cchhHHHHHHHHH-hhCCcceeeecCCCcCCccccccccCCCccceeeehhhcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 9999999999997 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccce
Q 010555 166 HEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKI 245 (507)
Q Consensus 166 ~~n~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I 245 (507)
|||||+|.+||+||+| .|+|+|+|+|+|+|||+||||+|+||++|||||+++|+||||||++|+|+||+|+|||+||+|
T Consensus 461 he~tq~daal~krlvp-~kng~r~f~~~m~rrlkrl~i~k~dp~~lt~ee~~~farlnidpdtit~~rvldvndrflr~i 539 (935)
T KOG4230|consen 461 HENTQSDAALYKRLVP-VKNGKRKFTPSMIRRLKRLGIEKTDPEDLTPEEIKKFARLNIDPDTITINRVLDVNDRFLRQI 539 (935)
T ss_pred hhcccchHHHHHhhcc-ccCCeeecCHHHHHHHHHhccccCCcccCCHHHHHHhHcccCCCCeeEEEEEeccchhhhhhe
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCcceecceeeeehhhHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccc
Q 010555 246 TIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLM 325 (507)
Q Consensus 246 ~iGlg~~~~G~~re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkdAikPNLv 325 (507)
+||+.++++|++|.+||||||||||||||+||+||+|||+||||||||.+++|+||||+||||+||+|+|||||||||||
T Consensus 540 tig~a~tekg~tr~t~fdisvase~mailals~dl~dm~erlgrmvva~dk~g~pvtaedlgv~galtvllkdaikpnlm 619 (935)
T KOG4230|consen 540 TIGQAPTEKGHTRTTGFDISVASECMAILALSKDLNDMKERLGRMVVAADKYGEPVTAEDLGVSGALTVLLKDAIKPNLM 619 (935)
T ss_pred ecccCccccCcccccccceehHHHHHHHHHHhccHHHHHHHhhcEEEeecCCCCcccHHhcCcchhHHHHHHhhcchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCceeEEeccCcccccccCchHHHHHHHHHhcCCC------CeEEeecccccccccccccccccccCCCCcceEEEE
Q 010555 326 QTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPG------GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIV 399 (507)
Q Consensus 326 QTlEgtPa~VHgGPFANIAhG~nSviAtk~ALklag~~------dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlV 399 (507)
|||||||||||+||||||+||.||||||++||||+|++ +||||||||++|||+|||||||||+|||.||+||||
T Consensus 620 qtlegtpv~vhagpfanisigassiiadrialklvgte~~~keagyvvteagf~~dmgmekffnikcr~sgl~p~avvlv 699 (935)
T KOG4230|consen 620 QTLEGTPVFVHAGPFANISIGASSIIADRIALKLVGTESRPKEAGYVVTEAGFASDMGMEKFFNIKCRYSGLVPNAVVLV 699 (935)
T ss_pred hhccCCeeEEecccccccccchHHHHHHHHHHHhcCCCCCcccCceEEEecccccccchhheeeeeeecCCCCCceEEEe
Confidence 99999999999999999999999999999999999987 499999999999999999999999999999999999
Q ss_pred eeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcC
Q 010555 400 ATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAG 479 (507)
Q Consensus 400 aTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G 479 (507)
|||||||+|||+|.++||+|||++|.+||+|.+++||+||.|||+|+++||+|||||||+|.|||+.||+.|++.+.++|
T Consensus 700 atvralk~hgggp~v~pg~plp~~y~~en~dlv~kg~snl~k~i~n~~~fgipvvvain~f~tds~~ei~~ir~~al~ag 779 (935)
T KOG4230|consen 700 ATVRALKLHGGGPKVKPGQPLPEEYTEENLDLVEKGCSNLVKQIENIKKFGIPVVVAINKFKTDSEKEIEAIREAALEAG 779 (935)
T ss_pred ehhHHHHhcCCCCCCCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHhHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccccccCchhhHHHHHhhhh
Q 010555 480 AFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 480 ~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
+++++.|+||++||+||++||++|+.
T Consensus 780 a~dav~snhwaeggkgai~la~av~~ 805 (935)
T KOG4230|consen 780 AFDAVTSNHWAEGGKGAIELAKAVIT 805 (935)
T ss_pred CcccccccchhhcCccHHHHHHHHHH
Confidence 99999999999999999999999985
No 5
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=100.00 E-value=2.4e-215 Score=1674.95 Aligned_cols=425 Identities=57% Similarity=0.927 Sum_probs=361.4
Q ss_pred CCChHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeechhhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHH
Q 010555 16 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 16 m~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~~kAKi~l~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~q 95 (507)
|||||||||+++++||++||+++||++|||||||+|||||++++++|++++|+|||||||||||||+|||||||||||+|
T Consensus 1 m~sd~~ia~~~~~~~i~~ia~~~gl~~~~~~~yG~~kaKi~~~~~~~~~~~~~gklilVTaitPTp~GEGKtTttiGL~~ 80 (557)
T PF01268_consen 1 MKSDIEIAQSAKLKPIEEIAEKLGLPEDDLEPYGRYKAKIDLSVLERLKDKPDGKLILVTAITPTPAGEGKTTTTIGLAQ 80 (557)
T ss_dssp --GGSTTTCTT----HHHHHHCTT--GGGEEEETTTEEEE-TCHHHHTTTS---EEEEEEESS--TTS-SHHHHHHHHHH
T ss_pred CCCHHHHHhcCCCCCHHHHHHHcCCCHHHHHhcCCCCcEeChHHHhhccccCCCcEEEEEecCCCCCCCCceeHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHh
Q 010555 96 ALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKAL 175 (507)
Q Consensus 96 aL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaA~NLlaA~iDn~i~~~n~~~~~~l 175 (507)
|| +|+||++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||+|
T Consensus 81 al-~~lg~~~~~~lRePSlGP~fG~KGGAaGGG~sqv~Pme~iNLhfTGD~hAIt~A~NLlaA~idn~i~~gn------- 152 (557)
T PF01268_consen 81 AL-NRLGKKAIAALREPSLGPVFGIKGGAAGGGYSQVVPMEDINLHFTGDFHAITAANNLLAAMIDNHIYHGN------- 152 (557)
T ss_dssp HH-HHTT--EEEEE----CHHHHCST-STTCETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTS-------
T ss_pred HH-HhcCCceEEEEecCCCCCccCccccccCCceeEEechHHeeccccCcHHHHHHHHHHHHHHHHHHHhccc-------
Confidence 99 6999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCCCC
Q 010555 176 FNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKG 255 (507)
Q Consensus 176 ~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~~~G 255 (507)
+|+|||++|+||||||||||+||+|+||+|++.||
T Consensus 153 ---------------------------------------------~l~iDp~~I~w~Rv~D~NDR~LR~i~iglg~~~~G 187 (557)
T PF01268_consen 153 ---------------------------------------------ELNIDPRRITWKRVLDMNDRALRNIVIGLGGKANG 187 (557)
T ss_dssp ---------------------------------------------TT-EECCCE---EEESS--GGGSSEEESTSSCCC-
T ss_pred ---------------------------------------------cCCCCcceeeeeeeccccchhhhheeeCCCCCCCC
Confidence 69999999999999999999999999999999999
Q ss_pred cceecceeeeehhhHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccceeecCceeEE
Q 010555 256 MVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLV 335 (507)
Q Consensus 256 ~~re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~V 335 (507)
+|||+|||||||||+|||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||+|||||||
T Consensus 188 ~~r~~~FdIT~ASEiMAilcLa~~l~Dlk~Rl~~ivv~~~~~~~pvta~dl~~~Gam~~LLkdAikPNLvQTlEgtPa~v 267 (557)
T PF01268_consen 188 VPREDGFDITVASEIMAILCLATDLEDLKERLGRIVVAYTKDGKPVTAEDLGAAGAMTALLKDAIKPNLVQTLEGTPAFV 267 (557)
T ss_dssp --EEE-EEEGGGSHHHHHHHC-SSHHHHHHHHHC-EEEEETTS-EEECHHHT-HHHHHHHTTTTTS-EEEEETTS-EEEE
T ss_pred CcccCceeeEechhhheehhhhcCHHHHHHHHhCEEEEEcCCCCeEEHHHcCCcHhHHHHHHhhcCchhhhhcccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcccccccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCcc
Q 010555 336 HAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVV 415 (507)
Q Consensus 336 HgGPFANIAhG~nSviAtk~ALklag~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~ 415 (507)
|||||||||||||||||||+||||+ ||||||||||||||||||||||||.+||+||||||||||||||||||++.
T Consensus 268 HgGPFANIAhG~nSviAt~~al~l~---dyvvTEAGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvRALK~HGG~~~-- 342 (557)
T PF01268_consen 268 HGGPFANIAHGCNSVIATKMALKLA---DYVVTEAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHGGVAK-- 342 (557)
T ss_dssp -----SSSS--B--HHHHHHHHHHS---SEEEEEBSSSTTTHHHHHHHTHHHHHT---SEEEEEEEHHHHHHHTT--G--
T ss_pred eccccccccccCchHHHHHHHHhhc---ceeecccccccccChhhhcCccchhcccCcceEEEeeechHHHhhcCCCc--
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999999975
Q ss_pred CCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchh
Q 010555 416 AGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 416 ~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeG 495 (507)
++|.+||+++|++||+||+|||+|+++||+|||||||+|++||++||++|+++|+++|++ +++|+||++||+|
T Consensus 343 ------~~l~~eNl~al~~G~~NL~rHIeNik~fGvpvVVAIN~F~tDT~aEi~~I~~~~~~~Gv~-~avs~~wa~GGeG 415 (557)
T PF01268_consen 343 ------DDLNEENLEALEKGFANLERHIENIKKFGVPVVVAINRFPTDTDAEIELIRELCEELGVR-AAVSEHWAKGGEG 415 (557)
T ss_dssp ------GGTTS--HHHHHHHHHHHHHHHHHHHCTT--EEEEEE--TTS-HHHHHHHHHHCCCCCEE-EEEC-HHHHGGGG
T ss_pred ------cccCccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHHHhCCCC-EEEechhhccccc
Confidence 679999999999999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred hHHHHHhhhh
Q 010555 496 AFKEPVRMLH 505 (507)
Q Consensus 496 a~~LA~~v~~ 505 (507)
++|||++|++
T Consensus 416 a~eLA~~Vv~ 425 (557)
T PF01268_consen 416 AVELAEAVVE 425 (557)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 6
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=100.00 E-value=9.6e-212 Score=1614.70 Aligned_cols=424 Identities=56% Similarity=0.907 Sum_probs=419.5
Q ss_pred ChHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeechhhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 18 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 18 sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~~kAKi~l~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|||||||+++++||.+||+++||..|+||+||+||||||++++++++++++|||||||||||||+|||||||||||+|||
T Consensus 1 sDieIa~~~~~k~I~~ia~k~Gl~~d~lelYG~ykAKi~~~~~~~l~~k~~gKlILVTaitPTPaGEGKsTttiGL~~al 80 (554)
T COG2759 1 SDIEIARAATMKPIEEIAEKLGLSADDLELYGHYKAKISLEVIKRLKNKPDGKLILVTAITPTPAGEGKTTTTIGLVDAL 80 (554)
T ss_pred ChhhhhhhcccccHHHHHHHcCCCHHHhhhccchhhhcCHHHHHhhccCCCceEEEEEecCCCCCCCCcceeeehHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHhhh
Q 010555 98 GAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFN 177 (507)
Q Consensus 98 ~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaA~NLlaA~iDn~i~~~n~~~~~~l~~ 177 (507)
+++||++++|||||||||||||||||||||||||+|||||||||||||||||+|||||+|+|||||||||
T Consensus 81 -~~lgK~~i~alRePSlGP~fGiKGGAaGGGyaqv~PmediNLHfTGD~HAItaAnNllsA~Idnhi~~gn--------- 150 (554)
T COG2759 81 -NKLGKKAIIALREPSLGPVFGIKGGAAGGGYAQVLPMEDINLHFTGDFHAITAANNLLSAAIDNHIYHGN--------- 150 (554)
T ss_pred -HhcCchheEEeccCCcCCccccccccCCCceeeeeehhhccccccCchhHHHHHHHHHHHHHHhhhhcCc---------
Confidence 5999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCCCCcc
Q 010555 178 RLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMV 257 (507)
Q Consensus 178 rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~~~G~~ 257 (507)
+|+|||+||+||||||||||+||+|+||+|++.||+|
T Consensus 151 -------------------------------------------~l~ID~~rI~wkRv~DmNDRaLR~I~vglg~~~~G~~ 187 (554)
T COG2759 151 -------------------------------------------ELGIDPRRITWKRVVDMNDRALRSIVVGLGGPENGVP 187 (554)
T ss_pred -------------------------------------------ccCcCcceEEEEeeeccchhhhhheeeccCCccCCcc
Confidence 6999999999999999999999999999999999999
Q ss_pred eecceeeeehhhHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccceeecCceeEEec
Q 010555 258 RETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHA 337 (507)
Q Consensus 258 re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~VHg 337 (507)
||||||||||||||||||||+|++|||+|||||||||++||+|||++||+++|||++|||||||||||||+||||+||||
T Consensus 188 RedgFdITvASEiMAIlcLa~dlkDlk~Rl~~iviay~~~~~PV~~~Dl~~~GAma~lLkDAikPNLvQTlEgtPa~VHg 267 (554)
T COG2759 188 REDGFDITVASEIMAILCLATDLKDLKERLGRIVIAYDYDGKPVTAGDLKVEGAMAALLKDAIKPNLVQTLEGTPAFVHG 267 (554)
T ss_pred cCCCceeehHHHHHHHHHHhhhHHHHHHHHhheEEEEecCCCceeeeccccchHHHHHHHhhccccceeecCCCceeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCC
Q 010555 338 GPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAG 417 (507)
Q Consensus 338 GPFANIAhG~nSviAtk~ALklag~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g 417 (507)
||||||||||||||||++||||+ ||||||||||||||+|||||||||.+||+||||||||||||||||||+++
T Consensus 268 GPFANIAhGcnSiiAt~~AlkL~---dy~VTEAGFgaDlGaEKF~dIK~r~~gl~PdavVlVATvRALK~hGG~~~---- 340 (554)
T COG2759 268 GPFANIAHGCNSIIATKTALKLA---DYVVTEAGFGADLGAEKFFDIKCRSSGLKPDAVVLVATVRALKMHGGVPK---- 340 (554)
T ss_pred CccchhhccchhHHHHHHHHhhc---CeEEEecccccccchhhhcceeccccCCCCCeEEEeeehHHHHHcCCCCh----
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999985
Q ss_pred CCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhH
Q 010555 418 KPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAF 497 (507)
Q Consensus 418 ~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~ 497 (507)
++|.+||+|+|++||+||.|||+|+|+||||||||||+|++||++||+.|+++|+++|++ +++|+||++||+|++
T Consensus 341 ----~~l~~Env~avk~G~aNL~~Hi~Nikkfgvp~VVAIN~F~tDt~~Ei~~i~~~~~~~gv~-~~ls~vwakGg~Gg~ 415 (554)
T COG2759 341 ----EDLTEENVDAVKKGFANLLKHIENIKKFGVPVVVAINKFPTDTEAEIAAIEKLCEEHGVE-VALSEVWAKGGEGGI 415 (554)
T ss_pred ----HHhcchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccCCCCCHHHHHHHHHHHHHcCCc-eeehhhhhccCccHH
Confidence 899999999999999999999999999999999999999999999999999999999996 999999999999999
Q ss_pred HHHHhhhhc
Q 010555 498 KEPVRMLHS 506 (507)
Q Consensus 498 ~LA~~v~~~ 506 (507)
|||++|+..
T Consensus 416 eLA~kVv~~ 424 (554)
T COG2759 416 ELAKKVVEA 424 (554)
T ss_pred HHHHHHHHH
Confidence 999999863
No 7
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=2e-209 Score=1630.76 Aligned_cols=447 Identities=54% Similarity=0.848 Sum_probs=438.1
Q ss_pred CCChHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeechhhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHH
Q 010555 16 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 16 m~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~~kAKi~l~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~q 95 (507)
|+|||||||+++++||++||+++||++|||||||+|||||+++++++++++|+||||+||+++|||+||||||||+||+|
T Consensus 1 m~sdieia~~~~~~~I~~ia~~lgl~~~~l~~YG~~kAKi~~~~~~~~~~~~~~k~IlVTs~~PTp~GEGKTT~si~La~ 80 (578)
T PRK13506 1 MLSDIEISRQAPLKPIAEIAAKLGLLPDELSPFGHTKAKVSLSVLKRLADKPKGKLVLVTAITPTPLGEGKTVTTIGLTQ 80 (578)
T ss_pred CCchHHHHhhCCCCCHHHHHHHcCCCHHHHhhcCCcceecCHHHHHhhccCCCCeEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHh
Q 010555 96 ALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKAL 175 (507)
Q Consensus 96 aL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaA~NLlaA~iDn~i~~~n~~~~~~l 175 (507)
+| +++|++++.|||||||||+||+||||+|||||||+|||||||||||||||||||||||+|+|||||||+|+++|++|
T Consensus 81 ~l-a~~Gk~~i~~LR~Pslg~~fg~kgga~GGGlsqvlpme~iNLHfTGD~hAItaA~NLlaA~iDn~i~~gn~~~~~~~ 159 (578)
T PRK13506 81 GL-NALGQKVCACIRQPSMGPVFGVKGGAAGGGYAQVVPMEELNLHLTGDIHAVSAAHNLAAAAIDARLFHEQRLGYDAF 159 (578)
T ss_pred HH-HHhCCceEEEeccCCcCCccCCCCCCCCCCeeeeeeHhhccccccChHHHHHHHHHHHHHHHHHHHhccCccCccch
Confidence 99 59999999999999999999999999999999999999999999999999999999999999999999998776552
Q ss_pred hhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCCCC
Q 010555 176 FNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKG 255 (507)
Q Consensus 176 ~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~~~G 255 (507)
+|+++|++|+|||++|+||||||||||+||+|+||+|++.||
T Consensus 160 --------------------------------------~~~~~~~~l~IDp~~I~w~Rv~DmNDR~LR~I~vglg~~~~G 201 (578)
T PRK13506 160 --------------------------------------EAQSGLPALDIDPEQILWKRVVDHNDRALRMITVGLGENGNG 201 (578)
T ss_pred --------------------------------------hhhccccccCcCcCeeEEeecccccchhhhceeeCcCCCCCC
Confidence 389999999999999999999999999999999999999999
Q ss_pred cceecceeeeehhhHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccceeecCceeEE
Q 010555 256 MVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLV 335 (507)
Q Consensus 256 ~~re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~V 335 (507)
+|||||||||||||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||+|||||||
T Consensus 202 ~~Re~gFdITvASEiMAIlcLa~dl~Dlk~Rl~~ivv~~~~~g~pVta~DL~~~GAm~~LLkDAikPNLvQTlEgtPa~v 281 (578)
T PRK13506 202 PEREDGFDITAASELMAILALSRDLKDMRQRIGRLVLAYNLQGQPITAEDLGVAGAMTVIMKDAIEPTLMQTLEGVPCLI 281 (578)
T ss_pred CcccCCceeeHHHHHHHHHHHcCCHHHHHHHhhcEEEEEcCCCCceeHHHccchHhHHHHHHHhccchhheecCCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcccccccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCcc
Q 010555 336 HAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVV 415 (507)
Q Consensus 336 HgGPFANIAhG~nSviAtk~ALklag~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~ 415 (507)
|||||||||||||||||||+||||+ ||||||||||||||||||||||||.+||+|||+||||||||||||||++...
T Consensus 282 HgGPFANIAhG~nSviAt~~aLkla---DyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~~~~ 358 (578)
T PRK13506 282 HAGPFANIAHGNSSIIADRIALKLA---DYVVTEGGFGSDMGFEKFCNIKARQSGKAPDCAVLVATLRALKANSGLYDLR 358 (578)
T ss_pred ecCCcccccccchHHHHHHHHHhhc---CeEEeeccccCCCCCceeeeeeeccCCCCCceEEEEEEeehHHhcCCCCCcc
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHH-cCCCeEEEccccccCch
Q 010555 416 AGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMA-AGAFDAVVCSHHAHGGK 494 (507)
Q Consensus 416 ~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~-~G~~~~~~s~~wa~GGe 494 (507)
.|+|||++|.+||+++|++||+||+|||+|+++||+|||||||+|++||++||++|+++|++ .|+ ++++|+||++||+
T Consensus 359 ~g~pl~~~l~~en~~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~~~~~~~~~~~~-~~~~~~~wa~GGe 437 (578)
T PRK13506 359 PGQALPDSINAPDQARLEAGFANLKWHINNVAQYGLPVVVAINRFPTDTDEELEWLKEAVLLTGAF-GCEISEAFAQGGE 437 (578)
T ss_pred cCcccchhccccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCC-cEEEechhhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999 455 4999999999999
Q ss_pred hhHHHHHhhhh
Q 010555 495 GAFKEPVRMLH 505 (507)
Q Consensus 495 Ga~~LA~~v~~ 505 (507)
|++|||++|++
T Consensus 438 Ga~eLA~~Vv~ 448 (578)
T PRK13506 438 GATALAQAVVR 448 (578)
T ss_pred hHHHHHHHHHH
Confidence 99999999985
No 8
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=1.6e-200 Score=1564.01 Aligned_cols=427 Identities=53% Similarity=0.869 Sum_probs=421.2
Q ss_pred CCCChHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeechhhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHH
Q 010555 15 PVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLC 94 (507)
Q Consensus 15 pm~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~~kAKi~l~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~ 94 (507)
+|||||||||+++++||++||+++||++|+||+||+|||||+++.+++++++|++|+|+||+++|||+||||||||+||+
T Consensus 1 ~~~sd~eia~~~~~~~i~~ia~~~gl~~~~~e~Yg~~kaki~~~~~~~~~~~~~~k~IlVTS~~PTp~GEGKTt~sinLA 80 (557)
T PRK13505 1 TMKSDIEIAQEATLKPITEIAAKLGIPEDDLEPYGKYKAKISLDKIKALKDKKDGKLILVTAINPTPAGEGKSTVTVGLG 80 (557)
T ss_pred CCCChHHHHhhCCCcCHHHHHHHcCCCHHHHHhccCcceeeCHHHHhhhccCCCCeEEEEecCCCCCCCCCHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhH
Q 010555 95 QALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKA 174 (507)
Q Consensus 95 qaL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaA~NLlaA~iDn~i~~~n~~~~~~ 174 (507)
|+| +++|++++++||||||||+||+||||||||||||+|||||||||||||||||||||||||+|||||||+|
T Consensus 81 ~~l-a~~GkkvlliLR~Psl~~~fg~kggaaGGG~~qvlpme~inLhftGD~hAit~A~NLlaA~idn~i~~gn------ 153 (557)
T PRK13505 81 DAL-NKIGKKTVIALREPSLGPVFGIKGGAAGGGYAQVVPMEDINLHFTGDFHAITSANNLLAALIDNHIHQGN------ 153 (557)
T ss_pred HHH-HHcCCeEEEEEecCCcccccCCCCCcCCCCceeeecHhHccccccChHHHHHHHHHHHHHHHHHHHhccC------
Confidence 999 5999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCCC
Q 010555 175 LFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEK 254 (507)
Q Consensus 175 l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~~~ 254 (507)
+|+|||++|+||||||||||+||+|+||+|++.|
T Consensus 154 ----------------------------------------------~l~id~~~i~w~Rv~D~NDR~LR~i~iglg~~~~ 187 (557)
T PRK13505 154 ----------------------------------------------ELGIDPRRITWKRVLDMNDRALRNIVVGLGGPAN 187 (557)
T ss_pred ----------------------------------------------ccCCCcceeEEEecccccchhhhceEeccCCCCC
Confidence 7999999999999999999999999999999999
Q ss_pred CcceecceeeeehhhHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccceeecCceeE
Q 010555 255 GMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVL 334 (507)
Q Consensus 255 G~~re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~ 334 (507)
|+|||||||||||||||||||||+|++|||+|||||||||++||+||||+||+++||||+|||||||||||||+||||||
T Consensus 188 G~~re~gFdIT~ASEiMAilcLa~~l~Dl~~Rl~~ivv~~~~~~~pvt~~dl~~~GAm~~lLkdAi~PnLvQTle~tPa~ 267 (557)
T PRK13505 188 GVPREDGFDITVASEIMAILCLATDLKDLKERLGRIVVGYTYDGKPVTVKDLKVEGAMALLLKDAIKPNLVQTLEGTPAF 267 (557)
T ss_pred CCcccCCceeeHHHHHHHHHHHhCCHHHHHHHHhCEEEEEcCCCCceeHHHcCchHHHHHHHHhhcccceeeecCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCcccccccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCc
Q 010555 335 VHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQV 414 (507)
Q Consensus 335 VHgGPFANIAhG~nSviAtk~ALklag~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~ 414 (507)
||||||||||||||||||||+||||+ ||||||||||||||||||||||||.+||+|||+||||||||||||||++.
T Consensus 268 vHgGPFANIAhG~nSviAt~~al~la---dyvvTEaGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvraLK~hgg~~~- 343 (557)
T PRK13505 268 VHGGPFANIAHGCNSVLATKTALKLA---DYVVTEAGFGADLGAEKFLDIKCRKAGLKPDAVVIVATVRALKMHGGVAK- 343 (557)
T ss_pred EecCCcchhhcccHHHHHHHHHHhhC---CEEEecccccCCCCCceeeeeecccCCCCCCEEEEEeehHHHHHcCCCCh-
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999986
Q ss_pred cCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCch
Q 010555 415 VAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 494 (507)
Q Consensus 415 ~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGe 494 (507)
++|.+||+|++++||.||+|||+|+|+||+|||||||+|++||++|++.|+++|++.|++ +++|+||++||+
T Consensus 344 -------~~l~~en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~-va~~~~~~~Gg~ 415 (557)
T PRK13505 344 -------DDLKEENVEALKKGFANLERHIENIRKFGVPVVVAINKFVTDTDAEIAALKELCEELGVE-VALSEVWAKGGE 415 (557)
T ss_pred -------hhccccCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCC-EEEecccccCCc
Confidence 789999999999999999999999999999999999999999999999999999999997 899999999999
Q ss_pred hhHHHHHhhhhc
Q 010555 495 GAFKEPVRMLHS 506 (507)
Q Consensus 495 Ga~~LA~~v~~~ 506 (507)
|+++||++|++.
T Consensus 416 Gai~LA~aVveA 427 (557)
T PRK13505 416 GGVELAEKVVEL 427 (557)
T ss_pred chHHHHHHHHHH
Confidence 999999999853
No 9
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=100.00 E-value=1.2e-199 Score=1545.24 Aligned_cols=410 Identities=65% Similarity=1.013 Sum_probs=402.2
Q ss_pred HHHHHHcCCCCcccccccCceeeechhhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010555 32 SEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 32 ~~iA~~lgl~~~~le~YG~~kAKi~l~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRe 111 (507)
.+||+++||++|+|||||+|||||+++++++++++|++|||+||+++|||+||||||||+||+|+| +++|+++++||||
T Consensus 1 ~~ia~~lgl~~~~~~~yG~~kaKi~~~~~~~~~~~~~~k~IlVTs~~PTp~GEGKTT~si~La~~l-a~~Gkk~l~~LR~ 79 (524)
T cd00477 1 EEIAKELGLLEDELEPYGKYKAKVDLDVLKRLEKRPDGKLILVTAITPTPAGEGKTTTTIGLAQAL-NAHGKKAIACLRE 79 (524)
T ss_pred ChhHHHcCCCHHHHHhccCcceeecHHHHhhhccCCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH-HHhCCcEEEEEec
Confidence 379999999999999999999999999999999889999999999999999999999999999999 5999999999999
Q ss_pred CCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHhhhccCCCCCcCCcchh
Q 010555 112 PSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFS 191 (507)
Q Consensus 112 PSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaA~NLlaA~iDn~i~~~n~~~~~~l~~rl~p~~~~g~r~f~ 191 (507)
|||||+||+||||||||||||+|||||||||||||||||||||||+|+|||||||+|
T Consensus 80 PSlg~~fg~kggaaGGG~sqvlpme~iNLhfTGD~hAItaA~NLlaA~iDn~i~~gn----------------------- 136 (524)
T cd00477 80 PSLGPTFGIKGGAAGGGYSQVIPMEEINLHFTGDIHAITAANNLLAAAIDNHIHHGN----------------------- 136 (524)
T ss_pred CCcCcccCCCCCCCCCChhhcccHhhhcccccchHHHHHHHHHHHHHHHHHHHhccc-----------------------
Confidence 999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCCCCcceecceeeeehhhHH
Q 010555 192 NIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIM 271 (507)
Q Consensus 192 ~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~~~G~~re~gFdITvASEiM 271 (507)
+|+|||++|+||||||||||+||+|+||+|++.||+|||||||||||||||
T Consensus 137 -----------------------------~l~iDp~~I~w~Rv~D~NDR~LR~iviglGg~~~G~~re~gFdITvASEiM 187 (524)
T cd00477 137 -----------------------------RLDIDPRRITWKRVLDVNDRALRKIVIGLGGKENGVPRETGFDITVASEIM 187 (524)
T ss_pred -----------------------------ccCCCcceeEEEecccccchhhhceEeccCCCCCCccccCCceeeHHHHHH
Confidence 799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccceeecCceeEEeccCcccccccCchHH
Q 010555 272 AVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIV 351 (507)
Q Consensus 272 AIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~VHgGPFANIAhG~nSvi 351 (507)
||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||+|||||||||||||||||||||||
T Consensus 188 AIlcLa~~l~DLk~Rl~~ivv~~~~~g~PVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~vHgGPFANIAhGcnSvi 267 (524)
T cd00477 188 AILCLATDLEDLKERLGRIVVAYSKDGEPVTAEDLGVAGAMAVLLKDAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSII 267 (524)
T ss_pred HHHHHcCCHHHHHHHHhCEEEEEcCCCCcEeHHHcCchHhHHHHHHhhhCccceeecCCCceEEecCCcccccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHH
Q 010555 352 ADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVAL 431 (507)
Q Consensus 352 Atk~ALklag~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~a 431 (507)
|||+||+|+ ||||||||||||||||||||||||.+||+|||+||||||||||||||+++..+++ +||+++
T Consensus 268 Atk~al~la---DyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~~~~l~~-------~en~~a 337 (524)
T cd00477 268 ADKIALKLA---DYVVTEAGFGADLGAEKFFNIKCRYSGLKPDAVVLVATVRALKMHGGVPKVTLGL-------EENLEA 337 (524)
T ss_pred HHHHHHhhc---CeEEeeccccCCCCCceeeeeeeccCCCCCCEEEEEEehHHHHHhCCCCcccCCC-------ccCHHH
Confidence 999999999 9999999999999999999999999999999999999999999999998754331 899999
Q ss_pred HHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 432 VEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 432 l~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
|++||+||+|||||+++||+|||||||+|++||++||++|+++|+++|++ +++|+||++||+|+++||++|+.
T Consensus 338 l~~G~~NL~~Hi~n~~~fg~p~VVaiN~F~~Dt~~Ei~~v~~~~~~~g~~-~~~~~~~~~GG~Ga~eLA~~Vi~ 410 (524)
T cd00477 338 LEKGFANLRKHIENIKKFGVPVVVAINKFSTDTDAELALVRKLAEEAGAF-VAVSEHWAEGGKGAVELAEAVIE 410 (524)
T ss_pred HHhHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCC-EEEehhhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997 89999999999999999999985
No 10
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=97.08 E-value=0.00046 Score=66.74 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=42.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE---EecCCCCCCccccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPSQGPTFGIK 121 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~---~lRePSlGP~FGiK 121 (507)
+..|.|.||+-.| ||||||++..|+.+| ++.|+++.+ .+|.|++.-.||.+
T Consensus 101 ~~~~vi~vts~~~---g~Gktt~a~nLA~~l-a~~g~~VllID~D~~~~~~~~~~~~~ 154 (274)
T TIGR03029 101 EGRKALAVVSAKS---GEGCSYIAANLAIVF-SQLGEKTLLIDANLRDPVQHRNFKLS 154 (274)
T ss_pred CCCeEEEEECCCC---CCCHHHHHHHHHHHH-HhcCCeEEEEeCCCCCccHHHhcCCC
Confidence 5678999987654 999999999999999 699999874 47999988777653
No 11
>CHL00175 minD septum-site determining protein; Validated
Probab=96.41 E-value=0.004 Score=60.48 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=42.3
Q ss_pred cCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccccc
Q 010555 64 EGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (507)
Q Consensus 64 ~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiKG 122 (507)
+.++.+|.|.|++- .=|.||||+|..|+.+| ++.|+++.+. ++.+++.-.||+..
T Consensus 10 ~~~~~~~vi~v~s~---KGGvGKTt~a~nLA~~L-a~~g~~vlliD~D~~~~~l~~~lg~~~ 67 (281)
T CHL00175 10 KSATMSRIIVITSG---KGGVGKTTTTANLGMSI-ARLGYRVALIDADIGLRNLDLLLGLEN 67 (281)
T ss_pred hcCCCceEEEEEcC---CCCCcHHHHHHHHHHHH-HhCCCeEEEEeCCCCCCChhhhcCCCC
Confidence 34466888888765 55999999999999999 5889997765 44566777777753
No 12
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=96.40 E-value=0.0038 Score=57.81 Aligned_cols=52 Identities=27% Similarity=0.340 Sum_probs=41.4
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiKG 122 (507)
++-|.|.||+.. -|+||||++..|+.+| ++.|+++.+. ++.|++.-.|+..+
T Consensus 15 ~~~kvI~v~s~k---gG~GKTt~a~~LA~~l-a~~G~rVllID~D~~~~~l~~~~~~~~ 69 (204)
T TIGR01007 15 AEIKVLLITSVK---PGEGKSTTSANIAVAF-AQAGYKTLLIDGDMRNSVMSGTFKSQN 69 (204)
T ss_pred CCCcEEEEecCC---CCCCHHHHHHHHHHHH-HhCCCeEEEEeCCCCChhHHHHhCCCC
Confidence 447899888765 5999999999999999 5889997743 78888776666553
No 13
>PRK11519 tyrosine kinase; Provisional
Probab=96.28 E-value=0.0046 Score=68.95 Aligned_cols=52 Identities=19% Similarity=0.370 Sum_probs=45.0
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiKG 122 (507)
...|.|+||+..| ||||||++..|+.+| +..|+++.+. +|.|++.-.||...
T Consensus 524 ~~~kvi~vts~~~---geGKTt~a~nLA~~l-a~~g~rvLlID~Dlr~~~~~~~~~~~~ 578 (719)
T PRK11519 524 AQNNVLMMTGVSP---SIGKTFVCANLAAVI-SQTNKRVLLIDCDMRKGYTHELLGTNN 578 (719)
T ss_pred CCceEEEEECCCC---CCCHHHHHHHHHHHH-HhCCCcEEEEeCCCCCCcHHHHhCCCC
Confidence 4578999998777 999999999999999 6899998765 89999888888653
No 14
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.96 E-value=0.006 Score=67.69 Aligned_cols=51 Identities=18% Similarity=0.087 Sum_probs=43.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiK 121 (507)
+..|.|.||+-.| ||||||++..|+.+| ++.|+++.+. +|.||+.-.||+.
T Consensus 544 ~~~kvi~vts~~~---G~GKTt~a~nLA~~l-A~~g~rvLlID~D~~~~~l~~~~~~~ 597 (754)
T TIGR01005 544 AEPEVVETQRPRP---VLGKSDIEANAAALI-ASGGKRALLIDADGRKAALSQILVAR 597 (754)
T ss_pred CCceEEEeecCCC---CCChhHHHHHHHHHH-HhCCCeEEEEeCCCCchhHHHHhCCc
Confidence 4578888887654 899999999999999 5899997765 7999998888864
No 15
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=95.90 E-value=0.011 Score=55.54 Aligned_cols=52 Identities=35% Similarity=0.486 Sum_probs=39.8
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE---EecCCCCCCccccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPSQGPTFGIK 121 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~---~lRePSlGP~FGiK 121 (507)
..+|.|.||+ ..-|+||||++..|+.+|....|+++.+ .++.|++...||++
T Consensus 33 ~~~~vi~v~s---~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~ 87 (207)
T TIGR03018 33 KNNNLIMVTS---SLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLE 87 (207)
T ss_pred CCCeEEEEEC---CCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCC
Confidence 4578887775 4569999999999999994235998764 46778887777654
No 16
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=95.77 E-value=0.0094 Score=66.58 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=43.8
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiK 121 (507)
..+|.|+||+-.| ||||||++..|+.+| +..|+++.+. +|.|++--.||+.
T Consensus 529 ~~~kvI~vtS~~~---g~GKTtva~nLA~~l-a~~G~rVLlID~D~r~~~l~~~~~~~ 582 (726)
T PRK09841 529 TENNILMITGATP---DSGKTFVSSTLAAVI-AQSDQKVLFIDADLRRGYSHNLFTVS 582 (726)
T ss_pred CCCeEEEEecCCC---CCCHHHHHHHHHHHH-HhCCCeEEEEeCCCCCCcHHHHcCCC
Confidence 4689999998765 999999999999999 6999998854 8999987778765
No 17
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=95.70 E-value=0.012 Score=61.35 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=58.4
Q ss_pred CCCHHHHHHHcCCCCcccccc--------------cCc--eeeechhhhhhh-------cCCCCCcEEEEeccCCCCCCC
Q 010555 28 PLHISEIAQELNLKPNHYDLY--------------GKY--KAKVLLSVLDEL-------EGSADGYYVVVGGITPTPLGE 84 (507)
Q Consensus 28 ~~~I~~iA~~lgl~~~~le~Y--------------G~~--kAKi~l~~l~~~-------~~~~~GklIlVTaitPTP~GE 84 (507)
.-+|.|+|+.+|++.+.+--| |+. +.-.+++-+.++ ..++.|.-.-|-+|.--.=|.
T Consensus 39 ~~~i~e~A~~~gvs~~tiR~ye~~gll~~~~~~~~gr~~~~~~ftL~ei~~lr~~~~~~~~r~~~~~~~vIai~n~KGGV 118 (388)
T PRK13705 39 RWRIGEAADLVGVSSQAIRDAEKAGRLPHPDMEMRGRVEQRVGYTIEQINHMRDVFGTRLRRAEDVFPPVIGVAAHKGGV 118 (388)
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcCCCCCCCcCCCCcchhhcCcCHHHHHHHHHhhcccccccCCCCCeEEEEECCCCCc
Confidence 447999999999998877766 331 111333322221 122333212233445567899
Q ss_pred CcchhHhhHHHHHhhhcCCcEEEE-e--cCCCCCCccc
Q 010555 85 GKSTTTVGLCQALGAFLDKKVVTC-L--RQPSQGPTFG 119 (507)
Q Consensus 85 GKTTttIGL~qaL~~~lgk~a~~~-l--RePSlGP~FG 119 (507)
||||||+.|+.+| ++.|+++.+. + .|-|+--.||
T Consensus 119 GKTT~a~nLA~~L-A~~G~rVLlID~~DpQ~nlt~~~g 155 (388)
T PRK13705 119 YKTSVSVHLAQDL-ALKGLRVLLVEGNDPQGTASMYHG 155 (388)
T ss_pred hHHHHHHHHHHHH-HhcCCCeEEEcCCCCCCchhhhcC
Confidence 9999999999999 6899998765 2 5556655565
No 18
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=95.45 E-value=0.023 Score=59.51 Aligned_cols=90 Identities=19% Similarity=0.210 Sum_probs=56.9
Q ss_pred CCHHHHHHHcCCCCcccccc--------------cCceee--echhhhhh-------hcCCCCCc-EEEEeccCCCCCCC
Q 010555 29 LHISEIAQELNLKPNHYDLY--------------GKYKAK--VLLSVLDE-------LEGSADGY-YVVVGGITPTPLGE 84 (507)
Q Consensus 29 ~~I~~iA~~lgl~~~~le~Y--------------G~~kAK--i~l~~l~~-------~~~~~~Gk-lIlVTaitPTP~GE 84 (507)
-.+.|+|+.+|+++..|..| |+-..+ .+++-+.. ...++.++ ..++ ++.-..=|.
T Consensus 40 f~~~eaA~l~gvs~~~lr~~~~~g~~p~~~~~~~gr~~~R~~ytl~eI~~lr~~~~~~~~r~~~~~~~vI-av~n~KGGV 118 (387)
T PHA02519 40 WGITEVADLIGVTPQAIRDAEKSGRLPPPDFETRGRVERRAGYTIDQISHMRDHFGNPNQRPDDKNPVVL-AVMSHKGGV 118 (387)
T ss_pred cCHHHHHHHhCcCHHHHHHHHHcCCCCCCccCCCCcccccceEcHHHHHHHHHHhhccccCcCCCCceEE-EEecCCCCC
Confidence 37899999999987776654 321112 33332221 11223343 2222 333457899
Q ss_pred CcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccc
Q 010555 85 GKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGI 120 (507)
Q Consensus 85 GKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGi 120 (507)
||||||+-|+++| +..|+++.+. -.|.|+--.||.
T Consensus 119 GKTTta~nLA~~L-A~~G~rVLlIDl~DpQ~nlt~~~g~ 156 (387)
T PHA02519 119 YKTSSAVHTAQWL-ALQGHRVLLIEGNDPQGTASMYHGY 156 (387)
T ss_pred cHHHHHHHHHHHH-HhCCCcEEEEeCCCCCCCcccccCc
Confidence 9999999999999 5899997764 356677767764
No 19
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=95.44 E-value=0.018 Score=54.18 Aligned_cols=48 Identities=35% Similarity=0.345 Sum_probs=34.9
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC---CCCCCcccc
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ---PSQGPTFGI 120 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRe---PSlGP~FGi 120 (507)
||.|.|++ +.=|+||||++..|+.+| ++.|+++.+.=-. |++.-.||+
T Consensus 1 ~~ii~v~s---~kGGvGKTt~a~~lA~~l-a~~g~~vlliD~D~~~~~~~~~lg~ 51 (261)
T TIGR01968 1 ARVIVITS---GKGGVGKTTTTANLGTAL-ARLGKKVVLIDADIGLRNLDLLLGL 51 (261)
T ss_pred CeEEEEec---CCCCccHHHHHHHHHHHH-HHcCCeEEEEECCCCCCCeeEEeCC
Confidence 56777765 456999999999999999 5889998766333 444444544
No 20
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=95.43 E-value=0.02 Score=59.10 Aligned_cols=52 Identities=25% Similarity=0.235 Sum_probs=44.3
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccccC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKGG 123 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiKGG 123 (507)
+..|.|.||+ .-|+||||++.-|+.+| ++.|+++.+. +|.||+.-.||++..
T Consensus 29 ~~~~ii~v~g----kgG~GKSt~a~nLa~~l-a~~g~rVllid~D~~~~~~~~~~g~~~~ 83 (329)
T cd02033 29 KKTQIIAIYG----KGGIGKSFTLANLSYMM-AQQGKRVLLIGCDPKSDTTSLLFGGKAC 83 (329)
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHH-HHCCCcEEEEEeeecccccchhccccCC
Confidence 4688899984 57999999999999999 5889998765 899999999987643
No 21
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=95.20 E-value=0.027 Score=58.09 Aligned_cols=47 Identities=32% Similarity=0.318 Sum_probs=34.1
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEe--cCCCCCCcccc
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL--RQPSQGPTFGI 120 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~l--RePSlGP~FGi 120 (507)
|.|.|+ -..-|+||||||+-|+.+| +..|+++.+.= -|+|+.-.||.
T Consensus 105 ~vI~v~---n~KGGvGKTT~a~nLA~~L-a~~G~rVLlID~DpQ~~ls~~~g~ 153 (387)
T TIGR03453 105 QVIAVT---NFKGGSGKTTTAAHLAQYL-ALRGYRVLAIDLDPQASLSALFGY 153 (387)
T ss_pred eEEEEE---ccCCCcCHHHHHHHHHHHH-HhcCCCEEEEecCCCCCHHHHcCC
Confidence 455444 4567999999999999999 58899865541 35666656654
No 22
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=95.19 E-value=0.027 Score=59.09 Aligned_cols=46 Identities=30% Similarity=0.312 Sum_probs=32.1
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEe--cCCCCCCccc
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL--RQPSQGPTFG 119 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~l--RePSlGP~FG 119 (507)
|.|.|+ =..=|+||||||+-|+++| ++.|+++.+.= -|.|+--.||
T Consensus 122 ~vIav~---n~KGGvGKTTta~nLA~~L-A~~G~rVLlIDlDpQ~~lt~~~g 169 (405)
T PRK13869 122 QVIAVT---NFKGGSGKTTTSAHLAQYL-ALQGYRVLAVDLDPQASLSALLG 169 (405)
T ss_pred eEEEEE---cCCCCCCHHHHHHHHHHHH-HhcCCceEEEcCCCCCCHHHHcC
Confidence 445444 4577999999999999999 68999865542 3444433454
No 23
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=95.14 E-value=0.015 Score=52.13 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=29.3
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010555 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSl 114 (507)
|++|-.|+||||++.||+.+| ++-|++.. ++.|.+
T Consensus 2 I~~t~~~~GKT~va~~L~~~l-~~~g~~V~--~~kP~~ 36 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKL-KKAGYSVG--YYKPVQ 36 (166)
T ss_pred eecCCCCccHHHHHHHHHHHH-HHCCCcEE--EEEeee
Confidence 689999999999999999999 58898764 466654
No 24
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.96 E-value=0.019 Score=57.12 Aligned_cols=52 Identities=37% Similarity=0.381 Sum_probs=44.0
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE---EecCCCCCCccccccC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPSQGPTFGIKGG 123 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~---~lRePSlGP~FGiKGG 123 (507)
..+.|+||+ .+-|+||||||.-|+.+| ++.|+++.+ -+|.||+-..||+...
T Consensus 56 ~~~~I~V~S---~kgGvGKStva~nLA~al-A~~G~rVlliDaD~~gps~~~~l~~~~~ 110 (265)
T COG0489 56 VKNVIAVTS---GKGGVGKSTVAVNLAAAL-AQLGKRVLLLDADLRGPSIPRMLGLENL 110 (265)
T ss_pred cceEEEEEe---CCCCCcHHHHHHHHHHHH-HhcCCcEEEEeCcCCCCchHHHhCCCCC
Confidence 466777765 567999999999999999 699999875 4999999999998553
No 25
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.78 E-value=0.034 Score=58.22 Aligned_cols=45 Identities=33% Similarity=0.530 Sum_probs=35.7
Q ss_pred hhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 62 ELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 62 ~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
.+.+.++| |||||| |-|+|||||--.+.+-+| +--...++++-.|
T Consensus 119 ~~~~~~~G-LILVTG----pTGSGKSTTlAamId~iN-~~~~~HIlTIEDP 163 (353)
T COG2805 119 ELAESPRG-LILVTG----PTGSGKSTTLAAMIDYIN-KHKAKHILTIEDP 163 (353)
T ss_pred HHHhCCCc-eEEEeC----CCCCcHHHHHHHHHHHHh-ccCCcceEEecCc
Confidence 34445555 999999 449999999999999995 6677778888765
No 26
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.42 E-value=0.046 Score=42.51 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=21.6
Q ss_pred CCCcchhHhhHHHHHhhhcCCcEEEEec
Q 010555 83 GEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (507)
Q Consensus 83 GEGKTTttIGL~qaL~~~lgk~a~~~lR 110 (507)
|+||||++..|++.| ++.|++.. ++.
T Consensus 9 G~Gktt~~~~l~~~l-~~~g~~v~-~~~ 34 (99)
T cd01983 9 GVGKTTLAANLAAAL-AKRGKRVL-LID 34 (99)
T ss_pred CCCHHHHHHHHHHHH-HHCCCeEE-EEC
Confidence 999999999999999 47777754 444
No 27
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=94.33 E-value=0.035 Score=54.33 Aligned_cols=47 Identities=30% Similarity=0.322 Sum_probs=39.3
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccccc
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiKG 122 (507)
|+|++++ .-|+||||++..|+.++ ++.|+++.+. .| ||++-+||++-
T Consensus 1 ~~~~~~g----kgG~GKtt~a~~la~~~-a~~g~~vLlvd~D~~-~sl~~~~~~~~ 50 (254)
T cd00550 1 RYIFFGG----KGGVGKTTISAATAVRL-AEQGKKVLLVSTDPA-HSLSDSFNQEF 50 (254)
T ss_pred CEEEEEC----CCCchHHHHHHHHHHHH-HHCCCCceEEeCCCc-ccHHHHhCCcc
Confidence 4677776 47999999999999999 5899998765 44 79999999984
No 28
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=93.96 E-value=0.055 Score=48.83 Aligned_cols=35 Identities=37% Similarity=0.240 Sum_probs=28.2
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
++-..-|+||||+++.|+.+| +..|+++.+.=..|
T Consensus 4 v~s~kgG~GKTt~a~~LA~~l-a~~g~~vllvD~D~ 38 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALAL-AKLGYKVGLLDADI 38 (169)
T ss_pred EecCCCcCChhHHHHHHHHHH-HHcCCcEEEEeCCC
Confidence 445567999999999999999 58899988763443
No 29
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.64 E-value=0.073 Score=49.98 Aligned_cols=39 Identities=38% Similarity=0.416 Sum_probs=30.2
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSl 114 (507)
.|-|++ .-|.||||+|.-|+.+| ++.|+++.+.=-.|-.
T Consensus 2 ~iav~g----KGGvGKTt~~~nLA~~l-a~~G~rvLliD~D~q~ 40 (212)
T cd02117 2 QIAIYG----KGGIGKSTTSQNLSAAL-AEMGKKVLQVGCDPKA 40 (212)
T ss_pred EEEEEC----CCcCcHHHHHHHHHHHH-HHCCCcEEEEeCCCCC
Confidence 455663 78999999999999999 6899997655344443
No 30
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=93.61 E-value=0.061 Score=47.62 Aligned_cols=41 Identities=39% Similarity=0.332 Sum_probs=31.0
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcc
Q 010555 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTF 118 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~F 118 (507)
++-+.-|+||||+++.|+.+| ++.|+++.+. .++|++...|
T Consensus 4 v~~~kgG~GKtt~a~~la~~l-~~~g~~vllvD~D~~~~~~~~~~ 47 (179)
T cd02036 4 VTSGKGGVGKTTTTANLGTAL-AQLGYKVVLIDADLGLRNLDLIL 47 (179)
T ss_pred EeeCCCCCCHHHHHHHHHHHH-HhCCCeEEEEeCCCCCCCchhhc
Confidence 344567999999999999999 5889998776 4455544444
No 31
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=93.40 E-value=0.086 Score=50.97 Aligned_cols=39 Identities=38% Similarity=0.346 Sum_probs=31.0
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
+|.|-|. + .=|.|||||++-|+.+| ++.|+++.+.=-.|
T Consensus 2 ~~iIav~--~--KGGVGKTT~~~nLA~~l-a~~G~kVLliD~Dp 40 (270)
T PRK13185 2 ALVLAVY--G--KGGIGKSTTSSNLSAAF-AKLGKKVLQIGCDP 40 (270)
T ss_pred ceEEEEE--C--CCCCCHHHHHHHHHHHH-HHCCCeEEEEeccC
Confidence 4566664 4 89999999999999999 58999977663455
No 32
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.35 E-value=0.067 Score=48.44 Aligned_cols=40 Identities=38% Similarity=0.699 Sum_probs=28.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGI 120 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGi 120 (507)
+.|.+|+..| ++|.||||.+.|++++|+ +.++--=|||-+
T Consensus 13 ~~g~vi~L~G----dLGaGKTtf~r~l~~~lg----------~~~~V~SPTF~l 52 (123)
T PF02367_consen 13 KPGDVILLSG----DLGAGKTTFVRGLARALG----------IDEEVTSPTFSL 52 (123)
T ss_dssp SS-EEEEEEE----STTSSHHHHHHHHHHHTT------------S----TTTTS
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHHHcC----------CCCCcCCCCeEE
Confidence 5689999998 799999999999999995 233555678875
No 33
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.22 E-value=0.099 Score=47.67 Aligned_cols=45 Identities=33% Similarity=0.513 Sum_probs=35.8
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccc
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FG 119 (507)
.|++|.|.|+ -|.||||.+--|.+.|. ..| ..+...|+|+ +-.+|
T Consensus 2 ~~~~I~ieG~----~gsGKsT~~~~L~~~l~-~~~-~~~~~~~~p~-~~~~~ 46 (205)
T PRK00698 2 RGMFITIEGI----DGAGKSTQIELLKELLE-QQG-RDVVFTREPG-GTPLG 46 (205)
T ss_pred CceEEEEECC----CCCCHHHHHHHHHHHHH-HcC-CceeEeeCCC-CChHH
Confidence 3889999996 59999999999999994 667 4467789998 43343
No 34
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=93.19 E-value=0.094 Score=53.16 Aligned_cols=36 Identities=44% Similarity=0.436 Sum_probs=31.1
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
||.|+||+ -.-|.||||||--|+-|| +++|||+++.
T Consensus 2 ~~iIVvTS---GKGGVGKTTttAnig~aL-A~~GkKv~li 37 (272)
T COG2894 2 ARIIVVTS---GKGGVGKTTTTANIGTAL-AQLGKKVVLI 37 (272)
T ss_pred ceEEEEec---CCCCcCccchhHHHHHHH-HHcCCeEEEE
Confidence 67888875 568999999999999999 6999998754
No 35
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=92.74 E-value=0.076 Score=50.73 Aligned_cols=31 Identities=48% Similarity=0.449 Sum_probs=25.9
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
.=|.||||+|+.|+.+| ++.|+++.+.==.|
T Consensus 9 KGGvGKTT~~~nLA~~L-a~~G~kVlliD~Dp 39 (270)
T cd02040 9 KGGIGKSTTTQNLSAAL-AEMGKKVMIVGCDP 39 (270)
T ss_pred CCcCCHHHHHHHHHHHH-HhCCCeEEEEEcCC
Confidence 88999999999999999 58999877653333
No 36
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=92.52 E-value=0.082 Score=51.66 Aligned_cols=31 Identities=42% Similarity=0.386 Sum_probs=26.1
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
.=|.||||||+.|+.+| ++.|+++.+.==.|
T Consensus 9 KGGVGKTT~a~nLA~~L-a~~G~rVLliD~Dp 39 (279)
T PRK13230 9 KGGIGKSTTVCNIAAAL-AESGKKVLVVGCDP 39 (279)
T ss_pred CCCCcHHHHHHHHHHHH-HhCCCEEEEEeeCC
Confidence 77999999999999999 69999976653444
No 37
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=92.46 E-value=0.13 Score=48.23 Aligned_cols=44 Identities=34% Similarity=0.345 Sum_probs=32.8
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEe---cCCCCCCccccc
Q 010555 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL---RQPSQGPTFGIK 121 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lgk~a~~~l---RePSlGP~FGiK 121 (507)
+.-..-|.||||+++.|+.+| ++.|+++.+.= .++++.-.||++
T Consensus 5 v~~~KGGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~~~~~~g~~ 51 (251)
T TIGR01969 5 IASGKGGTGKTTITANLGVAL-AKLGKKVLALDADITMANLELILGME 51 (251)
T ss_pred EEcCCCCCcHHHHHHHHHHHH-HHCCCeEEEEeCCCCCccceeEeCCC
Confidence 344577999999999999999 58898876652 345665556654
No 38
>PLN02924 thymidylate kinase
Probab=92.42 E-value=0.16 Score=49.40 Aligned_cols=47 Identities=26% Similarity=0.301 Sum_probs=38.8
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcc
Q 010555 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTF 118 (507)
Q Consensus 66 ~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~F 118 (507)
.+.|++|.+.|+ -|.||||.+--|.+.|. ..|.++ ..+|||+-+...
T Consensus 13 ~~~g~~IviEGi----DGsGKsTq~~~L~~~l~-~~g~~v-~~~~ep~~~~~~ 59 (220)
T PLN02924 13 ESRGALIVLEGL----DRSGKSTQCAKLVSFLK-GLGVAA-ELWRFPDRTTSV 59 (220)
T ss_pred CCCCeEEEEECC----CCCCHHHHHHHHHHHHH-hcCCCc-eeeeCCCCCChH
Confidence 356999999998 59999999999999995 678875 688999754333
No 39
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.28 E-value=0.082 Score=53.67 Aligned_cols=56 Identities=32% Similarity=0.389 Sum_probs=41.9
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC--CCCCccccccCCCCCCceeee
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP--SQGPTFGIKGGAAGGGYSQVI 133 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP--SlGP~FGiKGGAaGGGysQVi 133 (507)
|+|+++| +=|.||||++..++.++ ++.|+++.++==.| |+|.+||.+-| +.-.+|-
T Consensus 2 r~~~~~G----KGGVGKTT~aaA~A~~~-A~~G~rtLlvS~Dpa~~L~d~l~~~~~---~~~~~v~ 59 (305)
T PF02374_consen 2 RILFFGG----KGGVGKTTVAAALALAL-ARRGKRTLLVSTDPAHSLSDVLGQKLG---GEPTKVE 59 (305)
T ss_dssp SEEEEEE----STTSSHHHHHHHHHHHH-HHTTS-EEEEESSTTTHHHHHHTS--B---SS-EEET
T ss_pred eEEEEec----CCCCCcHHHHHHHHHHH-hhCCCCeeEeecCCCccHHHHhCCcCC---CCCeEec
Confidence 5778877 56999999999999999 58899999887766 68889999653 3444443
No 40
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=92.25 E-value=0.094 Score=50.64 Aligned_cols=31 Identities=42% Similarity=0.419 Sum_probs=25.4
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
.=|.||||||+-|+.+| ++.|+++.+.==.|
T Consensus 8 KGGVGKTT~~~nLA~~L-a~~g~rVLliD~D~ 38 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAF-AKLGKRVLQIGCDP 38 (268)
T ss_pred CCcCcHHHHHHHHHHHH-HhCCCeEEEEecCc
Confidence 67999999999999999 58899976542344
No 41
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.05 E-value=0.18 Score=50.42 Aligned_cols=35 Identities=29% Similarity=0.288 Sum_probs=28.8
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
+.+.|+++| |-|+|||||+.-|+..| ...|++..+
T Consensus 71 ~~~vi~l~G----~~G~GKTTt~akLA~~l-~~~g~~V~l 105 (272)
T TIGR00064 71 KPNVILFVG----VNGVGKTTTIAKLANKL-KKQGKSVLL 105 (272)
T ss_pred CCeEEEEEC----CCCCcHHHHHHHHHHHH-HhcCCEEEE
Confidence 467888885 77999999999999999 577876554
No 42
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=91.85 E-value=0.24 Score=49.64 Aligned_cols=51 Identities=25% Similarity=0.178 Sum_probs=37.4
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiK 121 (507)
+.||.|.|++ ..-|.||||++..|+.+| ++.|+++.+. .+.+++.-.||++
T Consensus 91 ~~~~vIav~~---~KGGvGkTT~a~nLA~~l-a~~g~~VlLvD~D~~~~~~~~~lg~~ 144 (322)
T TIGR03815 91 ARGVVVAVIG---GRGGAGASTLAAALALAA-ARHGLRTLLVDADPWGGGLDLLLGAE 144 (322)
T ss_pred CCceEEEEEc---CCCCCcHHHHHHHHHHHH-HhcCCCEEEEecCCCCCCeeeeecCC
Confidence 4689888876 567999999999999999 5889887654 2333333445554
No 43
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=91.77 E-value=0.25 Score=45.07 Aligned_cols=40 Identities=33% Similarity=0.424 Sum_probs=34.0
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSl 114 (507)
|++|+++|+ -|.||||.+--|.+.|+ ..|.+. ..+++|+-
T Consensus 3 g~~IvieG~----~GsGKsT~~~~L~~~l~-~~g~~v-~~~~~~~~ 42 (195)
T TIGR00041 3 GMFIVIEGI----DGAGKTTQANLLKKLLQ-ENGYDV-LFTREPGG 42 (195)
T ss_pred ceEEEEECC----CCCCHHHHHHHHHHHHH-HcCCeE-EEEeCCCC
Confidence 899999996 59999999999999995 668775 56888863
No 44
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=91.63 E-value=0.12 Score=50.17 Aligned_cols=27 Identities=48% Similarity=0.482 Sum_probs=23.5
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.=|.||||+|+.|+.+| ++.|+++.+.
T Consensus 8 KGGVGKTT~a~nLA~~L-a~~G~~Vlli 34 (275)
T TIGR01287 8 KGGIGKSTTTQNIAAAL-AEMGKKVMIV 34 (275)
T ss_pred CCcCcHHHHHHHHHHHH-HHCCCeEEEE
Confidence 77999999999999999 5889876553
No 45
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.55 E-value=0.28 Score=43.78 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=33.7
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP 116 (507)
++|.+.|+ -|.||||.+--|++.|. ..|.++ +.+++|+-++
T Consensus 1 ~~I~ieG~----~GsGKtT~~~~L~~~l~-~~g~~v-~~~~~~~~~~ 41 (200)
T cd01672 1 MFIVFEGI----DGAGKTTLIELLAERLE-ARGYEV-VLTREPGGTP 41 (200)
T ss_pred CEEEEECC----CCCCHHHHHHHHHHHHH-HcCCeE-EEEeCCCCCc
Confidence 47788874 69999999999999994 778885 7899998543
No 46
>PRK13973 thymidylate kinase; Provisional
Probab=91.48 E-value=0.27 Score=46.76 Aligned_cols=43 Identities=30% Similarity=0.398 Sum_probs=36.0
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP 116 (507)
+|++|++-|+ -|.||||.+-.|.+.|. ..|.+ +...|||+..|
T Consensus 2 ~g~~IviEG~----dGsGKtTq~~~l~~~l~-~~g~~-~~~~~~p~~~~ 44 (213)
T PRK13973 2 RGRFITFEGG----EGAGKSTQIRLLAERLR-AAGYD-VLVTREPGGSP 44 (213)
T ss_pred CceEEEEEcC----CCCCHHHHHHHHHHHHH-HCCCe-EEEEECCCCCc
Confidence 3899999997 49999999999999995 66776 57789998544
No 47
>PRK10037 cell division protein; Provisional
Probab=91.33 E-value=0.17 Score=48.77 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=31.6
Q ss_pred ccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE-e-cCCCCCCcccc
Q 010555 76 GITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC-L-RQPSQGPTFGI 120 (507)
Q Consensus 76 aitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~-l-RePSlGP~FGi 120 (507)
++.=..=|.||||+++.|+.+| ++.|+++.+. + .|.++.-.||.
T Consensus 5 av~n~KGGvGKTT~a~nLA~~L-a~~G~rVLlID~D~q~~~s~~~g~ 50 (250)
T PRK10037 5 GLQGVRGGVGTTSITAALAWSL-QMLGENVLVIDACPDNLLRLSFNV 50 (250)
T ss_pred EEecCCCCccHHHHHHHHHHHH-HhcCCcEEEEeCChhhhHHHHhCC
Confidence 3445678999999999999999 5899997654 2 23344444544
No 48
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=91.25 E-value=0.27 Score=48.02 Aligned_cols=44 Identities=32% Similarity=0.444 Sum_probs=38.2
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCc
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~ 117 (507)
+|++|.+-|| -|.||||.+--|.+-| ...|. .++..|||+=+|+
T Consensus 2 ~g~fI~iEGi----DGaGKTT~~~~L~~~l-~~~g~-~v~~trEP~~~~i 45 (208)
T COG0125 2 KGMFIVIEGI----DGAGKTTQAELLKERL-EERGI-KVVLTREPGGTPI 45 (208)
T ss_pred CceEEEEECC----CCCCHHHHHHHHHHHH-HHcCC-eEEEEeCCCCChH
Confidence 5899999998 5999999999999999 57788 6888999987654
No 49
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=91.22 E-value=0.15 Score=45.63 Aligned_cols=33 Identities=36% Similarity=0.342 Sum_probs=25.9
Q ss_pred CCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 79 PTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 79 PTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
-+.=|.||||+|..|+.+|. +.|+++.+.=-.|
T Consensus 5 ~~kGG~GKTt~a~~la~~la-~~g~~VlliD~D~ 37 (195)
T PF01656_consen 5 SGKGGVGKTTIAANLAQALA-RKGKKVLLIDLDP 37 (195)
T ss_dssp ESSTTSSHHHHHHHHHHHHH-HTTS-EEEEEEST
T ss_pred cCCCCccHHHHHHHHHhccc-cccccccccccCc
Confidence 45679999999999999994 7899987764443
No 50
>PHA02518 ParA-like protein; Provisional
Probab=91.21 E-value=0.16 Score=46.48 Aligned_cols=29 Identities=28% Similarity=0.247 Sum_probs=24.2
Q ss_pred CCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 79 PTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 79 PTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
-..=|.||||+|+.|+.+| ++.|+++.+.
T Consensus 7 ~~KGGvGKTT~a~~la~~l-a~~g~~vlli 35 (211)
T PHA02518 7 NQKGGAGKTTVATNLASWL-HADGHKVLLV 35 (211)
T ss_pred cCCCCCCHHHHHHHHHHHH-HhCCCeEEEE
Confidence 3456899999999999999 5889887644
No 51
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=91.11 E-value=0.18 Score=49.22 Aligned_cols=37 Identities=38% Similarity=0.314 Sum_probs=28.9
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcc
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTF 118 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~F 118 (507)
.=|.||||||+.|+.+| ++.|+++.+.==.|-.-=+.
T Consensus 9 KGGVGKTT~~~nLA~~L-a~~G~rVLlID~Dpq~~~t~ 45 (274)
T PRK13235 9 KGGIGKSTTTQNTVAGL-AEMGKKVMVVGCDPKADSTR 45 (274)
T ss_pred CCCccHHHHHHHHHHHH-HHCCCcEEEEecCCcccccc
Confidence 88999999999999999 69999977653455443333
No 52
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.10 E-value=0.23 Score=45.82 Aligned_cols=45 Identities=33% Similarity=0.460 Sum_probs=35.3
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP 116 (507)
+.|++|+++| |.|.||||++.-|.+-+. .+......+-|+|..|-
T Consensus 3 ~~g~~i~i~G----~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge 47 (205)
T PRK00300 3 RRGLLIVLSG----PSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGE 47 (205)
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCC
Confidence 5699999999 679999999988887763 45555556778888764
No 53
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=90.79 E-value=0.24 Score=47.97 Aligned_cols=33 Identities=42% Similarity=0.370 Sum_probs=27.7
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSl 114 (507)
.=|.||||+|+-|+.+| ++.|+++.+.==.|..
T Consensus 8 KGGvGKTT~a~nLA~~l-a~~G~rvlliD~Dpq~ 40 (267)
T cd02032 8 KGGIGKSTTSSNLSVAL-AKRGKKVLQIGCDPKH 40 (267)
T ss_pred CCCCCHHHHHHHHHHHH-HHCCCcEEEEecCCCC
Confidence 78999999999999999 5899998766555543
No 54
>PRK11670 antiporter inner membrane protein; Provisional
Probab=90.76 E-value=0.25 Score=51.55 Aligned_cols=49 Identities=33% Similarity=0.311 Sum_probs=37.8
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccc
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiK 121 (507)
.|.|.|+ -..=|+||||||+-|+.+| ++.|+++.+. ++-||+-=.||+.
T Consensus 107 ~~vIaV~---S~KGGVGKTT~avNLA~aL-A~~G~rVlLID~D~qgps~~~~lg~~ 158 (369)
T PRK11670 107 KNIIAVS---SGKGGVGKSSTAVNLALAL-AAEGAKVGILDADIYGPSIPTMLGAE 158 (369)
T ss_pred CEEEEEe---CCCCCCCHHHHHHHHHHHH-HHCCCcEEEEeCCCCCCCcchhcCCc
Confidence 3555555 5567999999999999999 6899998765 7778775557653
No 55
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=90.72 E-value=0.17 Score=47.53 Aligned_cols=30 Identities=33% Similarity=0.285 Sum_probs=25.6
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
|+.|-.|.|||++|.||+++| .+.|+++..
T Consensus 4 I~~t~t~~GKT~vs~~L~~~l-~~~g~~v~~ 33 (222)
T PRK00090 4 VTGTDTDVGKTVVTAALAQAL-REAGYSVAG 33 (222)
T ss_pred EEeCCCCcCHHHHHHHHHHHH-HHcCCceEE
Confidence 456788999999999999999 588997643
No 56
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=90.70 E-value=0.23 Score=45.58 Aligned_cols=72 Identities=26% Similarity=0.424 Sum_probs=47.3
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCccccc-ccchh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNL-HLTGD 145 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNL-HfTGD 145 (507)
+.|++|++.| +.|.||||.+.+++++|+ . .++=--|||-+.--=. .....+ || |
T Consensus 20 ~~~~~i~l~G----~lGaGKTtl~~~l~~~lg-~---------~~~v~SPTf~lv~~Y~---------~~~~~l~H~--D 74 (133)
T TIGR00150 20 DFGTVVLLKG----DLGAGKTTLVQGLLQGLG-I---------QGNVTSPTFTLVNEYN---------EGNLMVYHF--D 74 (133)
T ss_pred CCCCEEEEEc----CCCCCHHHHHHHHHHHcC-C---------CCcccCCCeeeeeecc---------cCCCcEEEe--c
Confidence 5688999998 689999999999999994 2 2233467787754322 111122 44 6
Q ss_pred hhHHHHHHhHHHHHHHhh
Q 010555 146 IHAITAANNLLAAAIDTR 163 (507)
Q Consensus 146 ~HAItaA~NLlaA~iDn~ 163 (507)
+..+.....+..--+|..
T Consensus 75 lYRl~~~~e~~~lg~ee~ 92 (133)
T TIGR00150 75 LYRLADPEELELMGLEDY 92 (133)
T ss_pred hhhcCChhHHHHCChHHh
Confidence 777776666655555533
No 57
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=90.45 E-value=0.11 Score=52.77 Aligned_cols=38 Identities=45% Similarity=0.428 Sum_probs=28.4
Q ss_pred CCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcc
Q 010555 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTF 118 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~F 118 (507)
-.=|.||||||+=|+-|| ++.|+++-+. +||||+.=.|
T Consensus 8 gKGGvGKSTva~~lA~aL-a~~G~kVg~lD~Di~q~S~~r~l 48 (261)
T PF09140_consen 8 GKGGVGKSTVAVNLAVAL-ARMGKKVGLLDLDIRQPSLPRYL 48 (261)
T ss_dssp SSTTTTHHHHHHHHHHHH-HCTT--EEEEE--TTT-HHHHHH
T ss_pred CCCCCcHHHHHHHHHHHH-HHCCCeEEEEecCCCCCCHHHHH
Confidence 456999999999999999 6999997754 7888875333
No 58
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=90.42 E-value=0.22 Score=48.55 Aligned_cols=32 Identities=38% Similarity=0.389 Sum_probs=26.9
Q ss_pred CCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
-.=|.|||||++-|+-+| ++.|+++.+.==.|
T Consensus 8 gKGGVGKTT~a~nLA~~L-a~~G~rVllvD~Dp 39 (273)
T PRK13232 8 GKGGIGKSTTTQNLTAAL-STMGNKILLVGCDP 39 (273)
T ss_pred CCCCCcHHHHHHHHHHHH-HhhCCCeEEEeccc
Confidence 588999999999999999 58999987663333
No 59
>PRK10646 ADP-binding protein; Provisional
Probab=90.41 E-value=0.25 Score=46.43 Aligned_cols=28 Identities=39% Similarity=0.566 Sum_probs=25.0
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.|.+|+..| ++|.||||.+.||+++|+
T Consensus 26 ~~g~vi~L~G----dLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 26 DGATVIYLYG----DLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHcC
Confidence 4588999988 799999999999999995
No 60
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=90.33 E-value=0.23 Score=49.67 Aligned_cols=35 Identities=29% Similarity=0.263 Sum_probs=28.7
Q ss_pred CCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCC
Q 010555 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQG 115 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlG 115 (507)
-.-|.|||||++-|+.+| ++.|+++.+. .+.++..
T Consensus 11 ~KGGvGKTt~~~nLa~~l-a~~g~kVLliD~D~q~~~~~ 48 (295)
T PRK13234 11 GKGGIGKSTTSQNTLAAL-VEMGQKILIVGCDPKADSTR 48 (295)
T ss_pred CCCCccHHHHHHHHHHHH-HHCCCeEEEEeccccccccc
Confidence 688999999999999999 6999997776 4444443
No 61
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=89.91 E-value=0.25 Score=46.42 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=26.7
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
|.|.|+ -..-|+||||+|+.|+.+| ++.|+++.+.
T Consensus 2 ~iI~v~---s~KGGvGKTt~a~nla~~l-a~~g~~Vlli 36 (246)
T TIGR03371 2 KVIAIV---GVKGGVGKTTLTANLASAL-KLLGEPVLAI 36 (246)
T ss_pred cEEEEE---eCCCCccHHHHHHHHHHHH-HhCCCcEEEE
Confidence 344444 3467999999999999999 5889886543
No 62
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=89.73 E-value=0.23 Score=49.84 Aligned_cols=32 Identities=41% Similarity=0.364 Sum_probs=26.1
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
.=|.|||||++-|+.+| ++.|+++.+.==.|-
T Consensus 8 KGGVGKTTta~nLA~~L-a~~G~rVLlID~DpQ 39 (290)
T CHL00072 8 KGGIGKSTTSCNISIAL-ARRGKKVLQIGCDPK 39 (290)
T ss_pred CCCCcHHHHHHHHHHHH-HHCCCeEEEEeccCC
Confidence 67999999999999999 599999765544443
No 63
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=89.43 E-value=0.33 Score=46.18 Aligned_cols=27 Identities=33% Similarity=0.265 Sum_probs=24.1
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.-|+||||++..|+..+ ++.|+++.+.
T Consensus 7 ~~g~Gkt~~~~~la~~~-a~~g~~~~l~ 33 (217)
T cd02035 7 KGGVGKTTIAAATAVRL-AEEGKKVLLV 33 (217)
T ss_pred CCCchHHHHHHHHHHHH-HHCCCcEEEE
Confidence 56999999999999999 5889998776
No 64
>PRK13768 GTPase; Provisional
Probab=89.16 E-value=0.5 Score=46.52 Aligned_cols=39 Identities=31% Similarity=0.321 Sum_probs=32.0
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
+.|+|++. .|.||||++.+|+++| ...|+++.+.=-.|.
T Consensus 3 ~~i~v~G~----~G~GKTt~~~~~~~~l-~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 3 YIVFFLGT----AGSGKTTLTKALSDWL-EEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEEECC----CCccHHHHHHHHHHHH-HhcCCceEEEECCCc
Confidence 45666653 8999999999999999 588999888777763
No 65
>PRK04296 thymidine kinase; Provisional
Probab=89.00 E-value=0.51 Score=44.33 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=34.5
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcccc
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGI 120 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGi 120 (507)
|+++|+|| |.|.||||.+++++..+. .-|+++.+. -|++.+.+|.
T Consensus 2 g~i~litG----~~GsGKTT~~l~~~~~~~-~~g~~v~i~--k~~~d~~~~~ 46 (190)
T PRK04296 2 AKLEFIYG----AMNSGKSTELLQRAYNYE-ERGMKVLVF--KPAIDDRYGE 46 (190)
T ss_pred cEEEEEEC----CCCCHHHHHHHHHHHHHH-HcCCeEEEE--eccccccccC
Confidence 77888887 679999999999999883 558776654 4666665553
No 66
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=88.96 E-value=0.38 Score=45.39 Aligned_cols=28 Identities=39% Similarity=0.701 Sum_probs=25.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.|.+|+..| ++|.||||.+.|+++||+
T Consensus 23 ~~g~Vv~L~G----dLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 23 KAGDVVLLSG----DLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CCCCEEEEEc----CCcCChHHHHHHHHHHcC
Confidence 4688999988 799999999999999995
No 67
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=88.92 E-value=0.34 Score=48.84 Aligned_cols=34 Identities=32% Similarity=0.381 Sum_probs=28.7
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlG 115 (507)
.=|+||||||+.|+.+| +..|+++.+.==.|.++
T Consensus 8 KGGvGKTT~a~nLA~~L-a~~g~rVLlID~Dpq~~ 41 (296)
T TIGR02016 8 KGGSGKSFTTTNLSHMM-AEMGKRVLQLGCDPKHD 41 (296)
T ss_pred CCCCCHHHHHHHHHHHH-HHCCCeEEEEEecCCCC
Confidence 78999999999999999 58899988776666544
No 68
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=88.90 E-value=0.19 Score=48.52 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=22.2
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEe
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCL 109 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~l 109 (507)
.=|.||||||+.|+.+| ++.| + ++.+
T Consensus 10 KGGvGKTT~a~nLA~~L-a~~G-r-VLli 35 (264)
T PRK13231 10 KGGIGKSTTVSNMAAAY-SNDH-R-VLVI 35 (264)
T ss_pred CCCCcHHHHHHHHhccc-CCCC-E-EEEE
Confidence 88999999999999999 5889 6 4444
No 69
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=88.64 E-value=0.32 Score=45.11 Aligned_cols=29 Identities=41% Similarity=0.449 Sum_probs=24.4
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
|+||-.+.|||+++.||+++| .+.|.+..
T Consensus 5 I~~t~t~vGKT~vslgL~~~l-~~~g~~v~ 33 (199)
T PF13500_consen 5 ITGTDTGVGKTVVSLGLARAL-RRRGIKVG 33 (199)
T ss_dssp EEESSSSSSHHHHHHHHHHHH-HHTTSEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHH-HhCCCceE
Confidence 457888999999999999999 57777744
No 70
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=88.61 E-value=0.54 Score=48.30 Aligned_cols=36 Identities=31% Similarity=0.341 Sum_probs=29.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
+.|++|++.| |-|+|||||+.-|+-.+ ...|++..+
T Consensus 112 ~~~~vi~lvG----pnGsGKTTt~~kLA~~l-~~~g~~V~L 147 (318)
T PRK10416 112 KKPFVILVVG----VNGVGKTTTIGKLAHKY-KAQGKKVLL 147 (318)
T ss_pred CCCeEEEEEC----CCCCcHHHHHHHHHHHH-HhcCCeEEE
Confidence 3578999998 77999999999999999 466776554
No 71
>PRK13976 thymidylate kinase; Provisional
Probab=88.52 E-value=0.52 Score=45.44 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=31.5
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
++|.+-|| -|.||||.+--|.+.|..+.|...+...|||+
T Consensus 1 ~fIv~EGi----DGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~ 40 (209)
T PRK13976 1 MFITFEGI----DGSGKTTQSRLLAEYLSDIYGENNVVLTREPG 40 (209)
T ss_pred CEEEEECC----CCCCHHHHHHHHHHHHHHhcCCcceEEeeCCC
Confidence 46777776 59999999999999995333655566789997
No 72
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=88.46 E-value=0.36 Score=46.90 Aligned_cols=27 Identities=48% Similarity=0.495 Sum_probs=23.2
Q ss_pred CCCCCCcchhHhhHHHHHhhh-cCCcEEE
Q 010555 80 TPLGEGKSTTTVGLCQALGAF-LDKKVVT 107 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~-lgk~a~~ 107 (507)
-.=|.|||||++-|+-+| ++ .|+++.+
T Consensus 9 ~KGGVGKTT~a~nLA~~L-a~~~G~rvLl 36 (275)
T PRK13233 9 GKGGIGKSTTTQNTAAAM-AYFHDKKVFI 36 (275)
T ss_pred cCCCCcHHHHHHHHHHHH-HHhcCCeEEE
Confidence 389999999999999999 56 6998554
No 73
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=88.20 E-value=0.49 Score=49.17 Aligned_cols=68 Identities=29% Similarity=0.288 Sum_probs=51.6
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC--CCCCccccccCCCCCCceeeecCcccccccchhhh
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP--SQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIH 147 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP--SlGP~FGiKGGAaGGGysQViPmediNLHfTGD~H 147 (507)
++|++||- =|.||||++..++=-+ +..|+++.+.-=.| |+|.+|+++= .-|..
T Consensus 3 riv~f~GK----GGVGKTT~aaA~A~~l-A~~g~kvLlvStDPAhsL~d~f~~el--------------------g~~~~ 57 (322)
T COG0003 3 RIVFFTGK----GGVGKTTIAAATAVKL-AESGKKVLLVSTDPAHSLGDVFDLEL--------------------GHDPR 57 (322)
T ss_pred EEEEEecC----CcccHHHHHHHHHHHH-HHcCCcEEEEEeCCCCchHhhhcccc--------------------CCchh
Confidence 68888885 5999999999999999 57898876666776 7777776532 25667
Q ss_pred HHHHHHhHHHHHHHhhh
Q 010555 148 AITAANNLLAAAIDTRI 164 (507)
Q Consensus 148 AItaA~NLlaA~iDn~i 164 (507)
+|+ .||-+..||-..
T Consensus 58 ~I~--~nL~a~eiD~~~ 72 (322)
T COG0003 58 KVG--PNLDALELDPEK 72 (322)
T ss_pred hcC--CCCceeeecHHH
Confidence 777 888777777543
No 74
>PRK10818 cell division inhibitor MinD; Provisional
Probab=88.17 E-value=0.42 Score=46.15 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=28.7
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
+|.|.|+ -..-|.||||+++.|+-+| ++.|+++++.
T Consensus 2 ~kviav~---s~KGGvGKTt~a~nlA~~l-a~~g~~vllv 37 (270)
T PRK10818 2 ARIIVVT---SGKGGVGKTTSSAAIATGL-AQKGKKTVVI 37 (270)
T ss_pred ceEEEEE---eCCCCCcHHHHHHHHHHHH-HHCCCeEEEE
Confidence 3555555 3467999999999999999 5889987765
No 75
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.90 E-value=0.55 Score=51.67 Aligned_cols=86 Identities=24% Similarity=0.395 Sum_probs=53.3
Q ss_pred hcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCccccccc
Q 010555 63 LEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHL 142 (507)
Q Consensus 63 ~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHf 142 (507)
+-++|.| +||||| |-|+|||||--.+.+-|+ .-.++ ++++=.|===..=| ..|+-==+++.|-|
T Consensus 253 ~~~~p~G-liLvTG----PTGSGKTTTLY~~L~~ln-~~~~n-I~TiEDPVE~~~~g---------I~Q~qVN~k~gltf 316 (500)
T COG2804 253 LLNRPQG-LILVTG----PTGSGKTTTLYAALSELN-TPERN-IITIEDPVEYQLPG---------INQVQVNPKIGLTF 316 (500)
T ss_pred HHhCCCe-EEEEeC----CCCCCHHHHHHHHHHHhc-CCCce-EEEeeCCeeeecCC---------cceeecccccCCCH
Confidence 3345666 899998 569999999988888884 54444 88887773222212 23433333666654
Q ss_pred ----------------chhhhHHHHHHhHHHHHHHhhh
Q 010555 143 ----------------TGDIHAITAANNLLAAAIDTRI 164 (507)
Q Consensus 143 ----------------TGD~HAItaA~NLlaA~iDn~i 164 (507)
-|.|---..|.=.+-|++--|+
T Consensus 317 a~~LRa~LRqDPDvImVGEIRD~ETAeiavqAalTGHL 354 (500)
T COG2804 317 ARALRAILRQDPDVIMVGEIRDLETAEIAVQAALTGHL 354 (500)
T ss_pred HHHHHHHhccCCCeEEEeccCCHHHHHHHHHHHhcCCe
Confidence 3444445566666666665554
No 76
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=87.80 E-value=0.38 Score=43.55 Aligned_cols=40 Identities=28% Similarity=0.233 Sum_probs=30.8
Q ss_pred CCCCCCCCcchhHhhHHHHHhhhcCCcEEE---EecCCCCCCcccccc
Q 010555 78 TPTPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPSQGPTFGIKG 122 (507)
Q Consensus 78 tPTP~GEGKTTttIGL~qaL~~~lgk~a~~---~lRePSlGP~FGiKG 122 (507)
+-..-|+||||++.-|+-+| +++.+ -+|.|++--.||+++
T Consensus 5 ~s~kgG~GKSt~a~nLA~~l-----~~vlliD~D~~~~~~~~~~~~~~ 47 (179)
T cd03110 5 ISGKGGTGKTTVTAALAALL-----KNVVLADCDVDAPNLHLFLKPEI 47 (179)
T ss_pred EcCCCCCCHHHHHHHHHHHH-----hCcEEEECCCCCCchhhhcCCCc
Confidence 34566999999999999988 44443 268888888888876
No 77
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=87.75 E-value=0.39 Score=43.24 Aligned_cols=43 Identities=33% Similarity=0.486 Sum_probs=31.1
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP 116 (507)
||+|++.| |-|.||||++.-|.+-+. ......-.+.|+|..|.
T Consensus 1 g~ii~l~G----~~GsGKsTl~~~L~~~~~-~~~~~~~~~tr~~~~g~ 43 (180)
T TIGR03263 1 GLLIVISG----PSGVGKSTLVKALLEEDP-NLKFSISATTRKPRPGE 43 (180)
T ss_pred CcEEEEEC----CCCCCHHHHHHHHHccCc-cccccccceeeCCCCCC
Confidence 68899998 779999998777766552 34444445678887664
No 78
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=87.57 E-value=3 Score=39.95 Aligned_cols=124 Identities=19% Similarity=0.071 Sum_probs=73.8
Q ss_pred CeEEeecccccccc----ccccccc--ccccCCCCcceEEEEee----ehHHHhcCCCCCccCCCCCchhccccCHH-HH
Q 010555 364 GFVVTEAGFGADIG----AEKFMNI--KCRYSGLTPQCAVIVAT----IRALKMHGGGPQVVAGKPLDHAYLNENVA-LV 432 (507)
Q Consensus 364 dyVVTEAGFGaDlG----aEKF~dI--KCr~sgl~PdavVlVaT----vRALK~HGG~~~~~~g~pL~~~~~~enl~-al 432 (507)
++=+=|.||++... .+..+++ +++..+...-.++++.+ ++.++-+| ...+..--+..+.+.+.|+. ..
T Consensus 32 GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~i~~~~s~~~~~~~~~~~~ 110 (265)
T cd03174 32 GVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVRIFDSASETHSRKNLNKSR 110 (265)
T ss_pred CCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEEEEEecCHHHHHHHhCCCH
Confidence 34455999998762 2555554 45554432333344444 34444443 33332222222211111100 11
Q ss_pred HHHhhhHHHHHHHHhccCCcEEEEecCCCC--CCHHHHHHHHHHHHHcCCCeEEEccc
Q 010555 433 EAGCVNLARHIANTKAYGANVVVAVNMFAT--DSKAELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 433 ~~G~~NL~~HIen~~~fGvpvVVAiN~F~t--DT~aEi~~v~~~~~~~G~~~~~~s~~ 488 (507)
+.-+.+....|+.+++.|+++.+.+=.... .+++++..+.+.+.+.|+..+.+++.
T Consensus 111 ~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt 168 (265)
T cd03174 111 EEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT 168 (265)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh
Confidence 224678888999999999999999944444 78999999999999999987777765
No 79
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=87.55 E-value=0.33 Score=44.28 Aligned_cols=34 Identities=32% Similarity=0.277 Sum_probs=29.8
Q ss_pred CCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCc
Q 010555 82 LGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (507)
Q Consensus 82 ~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~ 117 (507)
-|.||||.+--|.++| ...|.+ +...++|+-.|+
T Consensus 5 DGsGKtT~~~~L~~~l-~~~~~~-~~~~~~~~~~~~ 38 (186)
T PF02223_consen 5 DGSGKTTQIRLLAEAL-KEKGYK-VIITFPPGSTPI 38 (186)
T ss_dssp TTSSHHHHHHHHHHHH-HHTTEE-EEEEESSTSSHH
T ss_pred CCCCHHHHHHHHHHHH-HHcCCc-ccccCCCCCChH
Confidence 5999999999999999 588988 888899987664
No 80
>PRK13236 nitrogenase reductase; Reviewed
Probab=86.98 E-value=0.44 Score=47.74 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=27.3
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSl 114 (507)
.=|.|||||++-|+.+| ++.|+++.+.==.|-+
T Consensus 14 KGGVGKTt~a~NLA~~L-a~~G~rVLliD~D~q~ 46 (296)
T PRK13236 14 KGGIGKSTTSQNTLAAM-AEMGQRILIVGCDPKA 46 (296)
T ss_pred CCcCCHHHHHHHHHHHH-HHCCCcEEEEEccCCC
Confidence 78999999999999999 5789998876444443
No 81
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=86.86 E-value=0.9 Score=46.95 Aligned_cols=134 Identities=19% Similarity=0.309 Sum_probs=82.6
Q ss_pred HHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccceeec-CceeEEeccCcccccccCchH
Q 010555 272 AVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLE-GTPVLVHAGPFANIAHGNSSI 350 (507)
Q Consensus 272 AIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkdAikPNLvQTlE-gtPa~VHgGPFANIAhG~nSv 350 (507)
.+.|=-+-++.=+.++|.|+-+.+..|.|+.-..|++.=..++=|-+++|-+- .| .-.++|-+-|= -||+-+
T Consensus 108 ~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~vGe~~s~~lV~~~kk~a---~E~~~~~IIDsaaG----~gCpVi 180 (284)
T COG1149 108 SIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKHA---KELADLLIIDSAAG----TGCPVI 180 (284)
T ss_pred eeeCCCcccccccceeeEEEEEEcCCCceeEEeeccCCccccchHHHHHHHhh---hhhcceeEEecCCC----CCChHH
Confidence 34455555677888999999999988878888888775443333322222110 01 23334433221 233322
Q ss_pred HHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHH
Q 010555 351 VADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVA 430 (507)
Q Consensus 351 iAtk~ALklag~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~ 430 (507)
-| ++ | -|.+++|+- |-
T Consensus 181 ~s----l~--------------~-------------------aD~ai~VTE-------------------------PT-- 196 (284)
T COG1149 181 AS----LK--------------G-------------------ADLAILVTE-------------------------PT-- 196 (284)
T ss_pred Hh----hc--------------c-------------------CCEEEEEec-------------------------CC--
Confidence 11 11 1 355666652 11
Q ss_pred HHHHHhhhHHHHHHHHhccCCcEEEEecCCC-CCCHHHHHHHHHHHHHcCCCeEE
Q 010555 431 LVEAGCVNLARHIANTKAYGANVVVAVNMFA-TDSKAELNAVRNAAMAAGAFDAV 484 (507)
Q Consensus 431 al~~G~~NL~~HIen~~~fGvpvVVAiN~F~-tDT~aEi~~v~~~~~~~G~~~~~ 484 (507)
..|+-.|+|-+|-++.||+|+++.|||+. .|+ | |.++|++.|++ ..
T Consensus 197 --p~glhD~kr~~el~~~f~ip~~iViNr~~~g~s--~---ie~~~~e~gi~-il 243 (284)
T COG1149 197 --PFGLHDLKRALELVEHFGIPTGIVINRYNLGDS--E---IEEYCEEEGIP-IL 243 (284)
T ss_pred --ccchhHHHHHHHHHHHhCCceEEEEecCCCCch--H---HHHHHHHcCCC-ee
Confidence 13677899999999999999999999992 332 4 56899999997 44
No 82
>PRK08233 hypothetical protein; Provisional
Probab=86.61 E-value=0.48 Score=42.33 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=20.9
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+++|.|+|. | |.||||++--|++.|
T Consensus 3 ~~iI~I~G~---~-GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAV---S-GGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECC---C-CCCHHHHHHHHHhhC
Confidence 578888882 3 999999999998887
No 83
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=86.48 E-value=1.8 Score=41.95 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=28.6
Q ss_pred hHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHH
Q 010555 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRN 473 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~ 473 (507)
.-.+|++-++.+|+|++|++|+..--.+++++...+
T Consensus 126 ~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~ 161 (224)
T cd04165 126 MTKEHLGLALALNIPVFVVVTKIDLAPANILQETLK 161 (224)
T ss_pred HHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHH
Confidence 467889999999999999999987656666655544
No 84
>PRK05480 uridine/cytidine kinase; Provisional
Probab=86.39 E-value=0.89 Score=42.47 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=21.8
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
++.+|.++| |.|.||||++.-|.+.|
T Consensus 5 ~~~iI~I~G----~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAG----GSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 467899999 77999999998887665
No 85
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=86.38 E-value=0.57 Score=40.08 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=28.0
Q ss_pred ccCCCCCCCCcchhHhhHHHHHhhhc-CCcEEEEecCCC
Q 010555 76 GITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTCLRQPS 113 (507)
Q Consensus 76 aitPTP~GEGKTTttIGL~qaL~~~l-gk~a~~~lRePS 113 (507)
+++-+.-|+||||++..|+-++ ++. |+++.+.==.|.
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~-~~~~~~~~~l~d~d~~ 40 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVAL-AKEAGRRVLLVDLDLQ 40 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHH-HhcCCCcEEEEECCCC
Confidence 3445678999999999999999 576 888776533443
No 86
>PRK14974 cell division protein FtsY; Provisional
Probab=86.36 E-value=0.93 Score=47.25 Aligned_cols=36 Identities=31% Similarity=0.222 Sum_probs=28.7
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
.+.++|+++| |-|.|||||..-|+..|. ..|++.++
T Consensus 138 ~~~~vi~~~G----~~GvGKTTtiakLA~~l~-~~g~~V~l 173 (336)
T PRK14974 138 GKPVVIVFVG----VNGTGKTTTIAKLAYYLK-KNGFSVVI 173 (336)
T ss_pred CCCeEEEEEc----CCCCCHHHHHHHHHHHHH-HcCCeEEE
Confidence 3467999999 569999999999999994 66766543
No 87
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=85.54 E-value=0.68 Score=38.28 Aligned_cols=32 Identities=41% Similarity=0.412 Sum_probs=25.7
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
.-|.||||++..|++.| ++.|++..+.==.|+
T Consensus 8 kgG~Gkst~~~~la~~~-~~~~~~vl~~d~d~~ 39 (104)
T cd02042 8 KGGVGKTTTAVNLAAAL-ARRGKRVLLIDLDPQ 39 (104)
T ss_pred CCCcCHHHHHHHHHHHH-HhCCCcEEEEeCCCC
Confidence 35999999999999999 577888766645555
No 88
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=85.49 E-value=1 Score=45.09 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=23.0
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.+++|++.| | -|.|||||...|+..+.
T Consensus 193 ~~~vi~~vG--p--tGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 193 QGGVIALVG--P--TGVGKTTTLAKLAARFV 219 (282)
T ss_pred CCeEEEEEC--C--CCCCHHHHHHHHHHHHH
Confidence 577888886 4 49999999999999984
No 89
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=85.43 E-value=0.58 Score=45.03 Aligned_cols=32 Identities=38% Similarity=0.339 Sum_probs=25.4
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEec
Q 010555 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lR 110 (507)
|++|-.|.|||++|.||.++| .+.|.++. .+|
T Consensus 7 It~t~t~vGKT~vt~~L~~~l-~~~g~~v~-~~K 38 (231)
T PRK12374 7 ITGTDTSVGKTVVSRALLQAL-ASQGKTVA-GYK 38 (231)
T ss_pred EEECCCCCCHHHHHHHHHHHH-HHCCCeEE-EEC
Confidence 346778999999999999999 57787754 344
No 90
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=85.22 E-value=0.76 Score=44.44 Aligned_cols=35 Identities=29% Similarity=0.218 Sum_probs=27.1
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccc
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFN 139 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediN 139 (507)
|-|.||||++--|.+.|. ... +++-..++||+++.
T Consensus 7 ~sGSGKTTla~~L~~~l~-~~~-----------------------~~~~v~vi~~D~f~ 41 (220)
T cd02025 7 SVAVGKSTTARVLQALLS-RWP-----------------------DHPNVELITTDGFL 41 (220)
T ss_pred CCCCCHHHHHHHHHHHHh-hcC-----------------------CCCcEEEEecCccc
Confidence 679999999999988883 321 24667899999983
No 91
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=85.17 E-value=0.73 Score=46.28 Aligned_cols=52 Identities=27% Similarity=0.300 Sum_probs=37.6
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhh
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIH 147 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~H 147 (507)
|.|.+.++ .=|.||||+|..|+.+| .++|+++.+. -.-|-....|||.=|+.
T Consensus 2 ~~iai~s~---kGGvG~TTltAnLA~aL-~~~G~~VlaI----------------------D~dpqN~Lrlhfg~~~~ 53 (243)
T PF06564_consen 2 KVIAIVSP---KGGVGKTTLTANLAWAL-ARLGESVLAI----------------------DLDPQNLLRLHFGLPLD 53 (243)
T ss_pred cEEEEecC---CCCCCHHHHHHHHHHHH-HHCCCcEEEE----------------------eCCcHHHHHHhcCCCCc
Confidence 34555544 57999999999999999 6999986653 33455566677766653
No 92
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=84.65 E-value=1.2 Score=38.91 Aligned_cols=49 Identities=33% Similarity=0.320 Sum_probs=30.7
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccccc
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiKG 122 (507)
|+|.|++- --|.||||++..|+..| ++-|+++++. .+.|++--.||...
T Consensus 1 k~i~v~s~---~~g~G~t~~a~~lA~~l-a~~~~~Vllid~~~~~~~~~~~~~~~~ 52 (157)
T PF13614_consen 1 KVIAVWSP---KGGVGKTTLALNLAAAL-ARKGKKVLLIDFDFFSPSLSRLLGIEP 52 (157)
T ss_dssp EEEEEEES---STTSSHHHHHHHHHHHH-HHTTT-EEEEE--SSS-HHHHHTTSSS
T ss_pred CEEEEECC---CCCCCHHHHHHHHHHHH-HhcCCCeEEEECCCCCCCccccccccc
Confidence 45666553 45899999999999999 5888774432 24444444444433
No 93
>PRK10867 signal recognition particle protein; Provisional
Probab=84.56 E-value=1.1 Score=48.27 Aligned_cols=36 Identities=31% Similarity=0.290 Sum_probs=28.9
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhc-CCcEEEEe
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTCL 109 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~l-gk~a~~~l 109 (507)
.++|+++| |.|+|||||+.-|+..|. .. |++..+.=
T Consensus 100 p~vI~~vG----~~GsGKTTtaakLA~~l~-~~~G~kV~lV~ 136 (433)
T PRK10867 100 PTVIMMVG----LQGAGKTTTAGKLAKYLK-KKKKKKVLLVA 136 (433)
T ss_pred CEEEEEEC----CCCCcHHHHHHHHHHHHH-HhcCCcEEEEE
Confidence 46788886 779999999999999994 66 88776543
No 94
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=84.49 E-value=0.84 Score=41.21 Aligned_cols=29 Identities=34% Similarity=0.272 Sum_probs=23.2
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEec
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~lR 110 (507)
|.|+||||++.-|+..+. ..|++..++=.
T Consensus 8 ~~G~GKTt~~~~la~~~~-~~g~~v~~i~~ 36 (173)
T cd03115 8 LQGVGKTTTAAKLALYLK-KKGKKVLLVAA 36 (173)
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCcEEEEEc
Confidence 679999999999999994 66877655433
No 95
>PRK00131 aroK shikimate kinase; Reviewed
Probab=84.33 E-value=0.88 Score=40.03 Aligned_cols=28 Identities=39% Similarity=0.532 Sum_probs=23.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.++.|+++|+ .|.||||++..|++.|+
T Consensus 2 ~~~~~i~l~G~----~GsGKstla~~La~~l~ 29 (175)
T PRK00131 2 LKGPNIVLIGF----MGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCCeEEEEcC----CCCCHHHHHHHHHHHhC
Confidence 35789999995 69999999999999884
No 96
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=84.26 E-value=0.65 Score=44.56 Aligned_cols=33 Identities=39% Similarity=0.357 Sum_probs=23.5
Q ss_pred CCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
..=|.||||||+=|+-+|..+-|+++.+.==.|
T Consensus 10 ~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDp 42 (259)
T COG1192 10 QKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDP 42 (259)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 457999999999999999424446655443333
No 97
>PRK07933 thymidylate kinase; Validated
Probab=84.06 E-value=1.6 Score=41.93 Aligned_cols=40 Identities=33% Similarity=0.432 Sum_probs=32.3
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlG 115 (507)
++|.+-|+ -|.||||.+--|.+.|. ..|.+ ++..|+|..|
T Consensus 1 ~~IviEG~----dGsGKST~~~~L~~~L~-~~g~~-v~~~~~P~~~ 40 (213)
T PRK07933 1 MLIAIEGV----DGAGKRTLTEALRAALE-ARGRS-VATLAFPRYG 40 (213)
T ss_pred CEEEEEcC----CCCCHHHHHHHHHHHHH-HCCCe-EEEEecCCCC
Confidence 46777776 59999999999999995 66776 6778999644
No 98
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=83.73 E-value=0.98 Score=44.16 Aligned_cols=34 Identities=35% Similarity=0.430 Sum_probs=27.0
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010555 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRe 111 (507)
+.-..=|.|||||++-|+.+| ++.|+++.+.==.
T Consensus 6 v~n~KGGvGKTT~a~nLA~~l-a~~G~~VlliD~D 39 (231)
T PRK13849 6 FCSFKGGAGKTTALMGLCAAL-ASDGKRVALFEAD 39 (231)
T ss_pred EECCCCCccHHHHHHHHHHHH-HhCCCcEEEEeCC
Confidence 345678999999999999999 5889887655333
No 99
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=83.44 E-value=0.8 Score=42.96 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=36.7
Q ss_pred HHHHhccCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEccccccCchhhHHHHHhh
Q 010555 443 IANTKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 443 Ien~~~fGvpvVVAiN~F~tDT~aEi~-~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
...++++|+|+||++|+...=.+.-+. -..++.+..|++ ++. .=+..|+|-.+|-+++
T Consensus 98 ~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~p-vi~--~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 98 TLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVP-VIP--VSARTGEGIDELKDAI 156 (156)
T ss_dssp HHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS--EEE--EBTTTTBTHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCC-EEE--EEeCCCcCHHHHHhhC
Confidence 345667999999999996321111110 145666778997 443 3477889988887764
No 100
>PRK00889 adenylylsulfate kinase; Provisional
Probab=83.19 E-value=1.6 Score=39.65 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=28.0
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a 105 (507)
+.|++|+++|. .|.||||++.-|++.|. .-|.+.
T Consensus 2 ~~g~~i~~~G~----~GsGKST~a~~la~~l~-~~g~~v 35 (175)
T PRK00889 2 QRGVTVWFTGL----SGAGKTTIARALAEKLR-EAGYPV 35 (175)
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHHH-HcCCeE
Confidence 56999999995 59999999999999994 555443
No 101
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=83.06 E-value=1.5 Score=45.02 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=32.2
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
.+.+|+|+| |-|.|||||.-.|...+. ......++++-+|
T Consensus 121 ~~g~ili~G----~tGSGKTT~l~al~~~i~-~~~~~~i~tiEdp 160 (343)
T TIGR01420 121 PRGLILVTG----PTGSGKSTTLASMIDYIN-KNAAGHIITIEDP 160 (343)
T ss_pred cCcEEEEEC----CCCCCHHHHHHHHHHhhC-cCCCCEEEEEcCC
Confidence 478999998 459999999999988884 4445668888887
No 102
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=83.05 E-value=0.7 Score=50.32 Aligned_cols=26 Identities=42% Similarity=0.477 Sum_probs=22.1
Q ss_pred CCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 78 TPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 78 tPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
--|-.|.||||+|+||..||. +.|.+
T Consensus 6 Ag~~SG~GKTTvT~glm~aL~-~rg~~ 31 (451)
T COG1797 6 AGTSSGSGKTTVTLGLMRALR-RRGLK 31 (451)
T ss_pred ecCCCCCcHHHHHHHHHHHHH-hcCCc
Confidence 347789999999999999994 66765
No 103
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=82.93 E-value=1.4 Score=47.47 Aligned_cols=35 Identities=31% Similarity=0.274 Sum_probs=27.7
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
..+++|+++| || |.|||||...|+..+. ..|+++.
T Consensus 204 ~~~~ii~lvG--pt--GvGKTTt~akLA~~l~-~~g~~V~ 238 (407)
T PRK12726 204 SNHRIISLIG--QT--GVGKTTTLVKLGWQLL-KQNRTVG 238 (407)
T ss_pred cCCeEEEEEC--CC--CCCHHHHHHHHHHHHH-HcCCeEE
Confidence 3588999988 55 9999999999998873 5576543
No 104
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=82.83 E-value=1.3 Score=48.30 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.9
Q ss_pred EEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 72 VVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|+||| |-.|.||||+|.||.++|.
T Consensus 241 i~Iag---t~Tg~GKT~vt~~L~~al~ 264 (476)
T PRK06278 241 IILLA---TGSESGKTFLTTSIAGKLR 264 (476)
T ss_pred EEEEe---CCCCCCHHHHHHHHHHHHH
Confidence 77776 5689999999999999995
No 105
>PRK10436 hypothetical protein; Provisional
Probab=82.16 E-value=1.5 Score=47.64 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=31.0
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
..-+|||||-| |+|||||--.+...++ ..+ +.++++=.|-
T Consensus 217 ~~GliLvtGpT----GSGKTTtL~a~l~~~~-~~~-~~i~TiEDPv 256 (462)
T PRK10436 217 PQGLILVTGPT----GSGKTVTLYSALQTLN-TAQ-INICSVEDPV 256 (462)
T ss_pred cCCeEEEECCC----CCChHHHHHHHHHhhC-CCC-CEEEEecCCc
Confidence 35699999944 9999999988778884 544 4588888875
No 106
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=81.34 E-value=2.1 Score=41.85 Aligned_cols=35 Identities=34% Similarity=0.419 Sum_probs=30.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
.+|=.|-+|+.+ |+||||++..|.|+|. ..|+-+.
T Consensus 29 qkGcviWiTGLS----gSGKStlACaL~q~L~-qrgkl~Y 63 (207)
T KOG0635|consen 29 QKGCVIWITGLS----GSGKSTLACALSQALL-QRGKLTY 63 (207)
T ss_pred CCCcEEEEeccC----CCCchhHHHHHHHHHH-hcCceEE
Confidence 579999999995 8999999999999995 6687665
No 107
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=81.22 E-value=1.8 Score=46.72 Aligned_cols=35 Identities=26% Similarity=0.225 Sum_probs=28.8
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
..+|+++| |-|+|||||+.-|+..| ...|++..++
T Consensus 95 p~vI~lvG----~~GsGKTTtaakLA~~L-~~~g~kV~lV 129 (437)
T PRK00771 95 PQTIMLVG----LQGSGKTTTAAKLARYF-KKKGLKVGLV 129 (437)
T ss_pred CeEEEEEC----CCCCcHHHHHHHHHHHH-HHcCCeEEEe
Confidence 56888888 67999999999999999 4678776654
No 108
>PRK03846 adenylylsulfate kinase; Provisional
Probab=80.61 E-value=2.1 Score=40.05 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=27.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+.|++|.+||.+ |.||||++--|.+.|. ..|..++
T Consensus 22 ~~~~~i~i~G~~----GsGKSTla~~l~~~l~-~~~~~~~ 56 (198)
T PRK03846 22 HKGVVLWFTGLS----GSGKSTVAGALEEALH-ELGVSTY 56 (198)
T ss_pred CCCEEEEEECCC----CCCHHHHHHHHHHHHH-hCCCCEE
Confidence 578999999974 9999999999988883 4455443
No 109
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=80.54 E-value=1.5 Score=46.65 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=56.6
Q ss_pred ccccCceeeech-hhhhhhcC--CCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcccccc
Q 010555 46 DLYGKYKAKVLL-SVLDELEG--SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKG 122 (507)
Q Consensus 46 e~YG~~kAKi~l-~~l~~~~~--~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKG 122 (507)
+.||.++++-.+ +.+..... ....|+++.+| |-|.||||++--|+.+|+ +. .|+ .-||.|-+||
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~G----PPGsGKStla~~La~~l~-~y-------s~t-~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLG----PVGGGKSSLVECLKRGLE-EY-------SKT-PEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEEC----CCCCCHHHHHHHHHHHHh-hh-------ccc-ccCceEEEEe
Confidence 588988887554 34433221 23457888887 779999999999999995 32 344 4699999988
Q ss_pred CCCCCCceeeecCcccccccc
Q 010555 123 GAAGGGYSQVIPMDEFNLHLT 143 (507)
Q Consensus 123 GAaGGGysQViPmediNLHfT 143 (507)
+. ..-||-|-=||+-
T Consensus 119 ~~------~~sp~~e~Pl~l~ 133 (361)
T smart00763 119 NG------EESPMHEDPLHLF 133 (361)
T ss_pred cC------CCCCCccCCcccC
Confidence 65 5668888777764
No 110
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=80.49 E-value=1.2 Score=47.70 Aligned_cols=31 Identities=32% Similarity=0.405 Sum_probs=25.5
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
|+-|..|.||||+|.||+++| .+.|.++...
T Consensus 4 I~gT~t~vGKT~vt~~L~~~L-~~~G~~V~~f 34 (449)
T TIGR00379 4 IAGTSSGVGKTTISTGIMKAL-SRRKLRVQPF 34 (449)
T ss_pred EEeCCCCCcHHHHHHHHHHHH-HHCCCceeEE
Confidence 345778999999999999999 5889885544
No 111
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=80.28 E-value=1.3 Score=43.56 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=21.5
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
|+|.||||.+-++.|=+ ...|++..+.
T Consensus 4 paGSGKTT~~~~~~~~~-~~~~~~~~~v 30 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWL-ESNGRDVYIV 30 (238)
T ss_dssp STTSSHHHHHHHHHHHH-TTT-S-EEEE
T ss_pred CCCCCHHHHHHHHHHHH-HhccCCceEE
Confidence 89999999999999999 4777776554
No 112
>PTZ00301 uridine kinase; Provisional
Probab=80.08 E-value=1.6 Score=42.41 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=22.1
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhh
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAF 100 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~ 100 (507)
++|-|+| |.|+||||++-.|.+.|+.+
T Consensus 4 ~iIgIaG----~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 4 TVIGISG----ASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred EEEEEEC----CCcCCHHHHHHHHHHHHHhh
Confidence 5777887 46999999999999988533
No 113
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=80.06 E-value=6.7 Score=43.56 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=38.0
Q ss_pred HHHHHHHHhccCCc-EEEEecCCCCCCHHHHHH----HHHHHHHc----CCCeEEEccccccCchhhHHHHHh
Q 010555 439 LARHIANTKAYGAN-VVVAVNMFATDSKAELNA----VRNAAMAA----GAFDAVVCSHHAHGGKGAFKEPVR 502 (507)
Q Consensus 439 L~~HIen~~~fGvp-vVVAiN~F~tDT~aEi~~----v~~~~~~~----G~~~~~~s~~wa~GGeGa~~LA~~ 502 (507)
...|+..++.+|+| +||++|+-..-++++++. ++++++.. +++ ++.++.. =|+|-.+|-+.
T Consensus 91 T~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~-ii~vSA~--tG~GI~eL~~~ 160 (581)
T TIGR00475 91 TGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAK-IFKTSAK--TGQGIGELKKE 160 (581)
T ss_pred HHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCc-EEEEeCC--CCCCchhHHHH
Confidence 34677778889999 999999987655665543 44555443 344 4444433 35665555443
No 114
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=80.01 E-value=2.4 Score=40.06 Aligned_cols=38 Identities=29% Similarity=0.450 Sum_probs=28.5
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
+|+|+| |-|.||||+.-.|...+. .-....++++.+|-
T Consensus 3 lilI~G----ptGSGKTTll~~ll~~~~-~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTG----PTGSGKSTTLAAMIDYIN-KNKTHHILTIEDPI 40 (198)
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHhh-hcCCcEEEEEcCCc
Confidence 567776 569999999998888884 33445677888764
No 115
>PRK06696 uridine kinase; Validated
Probab=79.77 E-value=2 Score=41.01 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.7
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
-.+|.|+| +.|.||||++--|++.|+
T Consensus 22 ~~iI~I~G----~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 22 PLRVAIDG----ITASGKTTFADELAEEIK 47 (223)
T ss_pred ceEEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 45888888 679999999999999995
No 116
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=78.88 E-value=2.3 Score=37.81 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=26.7
Q ss_pred CCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
-.-|+||||++.+|+..+. ..|+++.+.=-.|
T Consensus 7 ~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~ 38 (139)
T cd02038 7 GKGGVGKTNISANLALALA-KLGKRVLLLDADL 38 (139)
T ss_pred CCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC
Confidence 3779999999999999994 7798887765555
No 117
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=78.83 E-value=1.7 Score=40.82 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=22.9
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 66 ~~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+|.|.+|.++| |.|.||||++--|.+.|
T Consensus 3 ~~~g~vi~I~G----~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 3 KPKGIIIGIGG----GSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCCeEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 47799999999 77999999886666555
No 118
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=78.67 E-value=2.8 Score=39.62 Aligned_cols=36 Identities=33% Similarity=0.447 Sum_probs=27.2
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
..++++|+| |+|.||||+..-+.+++. .-|++.+++
T Consensus 17 ~~~~~~l~G----~aGtGKT~~l~~~~~~~~-~~g~~v~~~ 52 (196)
T PF13604_consen 17 GDRVSVLQG----PAGTGKTTLLKALAEALE-AAGKRVIGL 52 (196)
T ss_dssp TCSEEEEEE----STTSTHHHHHHHHHHHHH-HTT--EEEE
T ss_pred CCeEEEEEE----CCCCCHHHHHHHHHHHHH-hCCCeEEEE
Confidence 457999988 699999999999999994 546554443
No 119
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=78.60 E-value=5.1 Score=42.16 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=44.6
Q ss_pred hHHHHHHHHhccCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHh
Q 010555 438 NLARHIANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVR 502 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~ 502 (507)
.|+.+|+-++++|..+.|++|-|..+.+.| .+.+.+++ +.|+..+++++. |.+.|++.
T Consensus 50 ~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~-e~GvDaviv~Dp------g~i~l~~e 109 (347)
T COG0826 50 DLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLV-ELGVDAVIVADP------GLIMLARE 109 (347)
T ss_pred HHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHH-HcCCCEEEEcCH------HHHHHHHH
Confidence 588999999999999999999999888877 55666554 599975555553 55666553
No 120
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=78.52 E-value=2.1 Score=47.22 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=29.9
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
.-+|||||-| |+|||||--.+...++ .. .+.++++-.|-
T Consensus 316 ~Glilv~G~t----GSGKTTtl~a~l~~~~-~~-~~~i~tiEdpv 354 (564)
T TIGR02538 316 QGMVLVTGPT----GSGKTVSLYTALNILN-TE-EVNISTAEDPV 354 (564)
T ss_pred CCeEEEECCC----CCCHHHHHHHHHHhhC-CC-CceEEEecCCc
Confidence 4589999944 9999999888877773 44 35588888883
No 121
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=78.51 E-value=7.6 Score=39.45 Aligned_cols=127 Identities=15% Similarity=0.170 Sum_probs=78.6
Q ss_pred CcccccccCchHHHHHHHHHh-cCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHH---hcCCCCCc
Q 010555 339 PFANIAHGNSSIVADKIALKL-VGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALK---MHGGGPQV 414 (507)
Q Consensus 339 PFANIAhG~nSviAtk~ALkl-ag~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvRALK---~HGG~~~~ 414 (507)
|+.+..-.+-..--+++.-|. +|. ||+||-..|..+. .++|++ +||..|+..-.+.=|.-+..+| +.--
T Consensus 138 Pe~Hp~~~~~~~d~~~L~~Ki~aGA-~f~iTQ~~Fd~~~-~~~f~~-~~~~~gi~~PIi~GI~pi~s~~~~~~~~~---- 210 (281)
T TIGR00677 138 PEGHPEAESVELDLKYLKEKVDAGA-DFIITQLFYDVDN-FLKFVN-DCRAIGIDCPIVPGIMPINNYASFLRRAK---- 210 (281)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC-CEeeccceecHHH-HHHHHH-HHHHcCCCCCEEeeccccCCHHHHHHHHh----
Confidence 665444333222234555554 333 6999999999875 678888 7999998765444333333333 2222
Q ss_pred cCCCCCchhccc------cCHHH-HHHHhhhHHHHHHHHhccCCcEE--EEecCCCCCCHHHHHHHHHHHHHcCC
Q 010555 415 VAGKPLDHAYLN------ENVAL-VEAGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGA 480 (507)
Q Consensus 415 ~~g~pL~~~~~~------enl~a-l~~G~~NL~~HIen~~~fGvpvV--VAiN~F~tDT~aEi~~v~~~~~~~G~ 480 (507)
.+|-.+|+++.+ ++.++ -+.|++--.+.|+.+...|+|-| ..+|++ +.+.+.|+..|.
T Consensus 211 ~~Gi~vP~~l~~~l~~~~~~~~~~~~~gi~~a~~~~~~l~~~G~~giH~~t~n~~--------~~~~~il~~l~~ 277 (281)
T TIGR00677 211 WSKTKIPQEIMSRLEPIKDDDEAVRDYGIELIVEMCQKLLASGIKGLHFYTLNLE--------KAALMILERLGL 277 (281)
T ss_pred cCCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHCCCCeeEEeccCch--------HHHHHHHHHcCC
Confidence 235556665544 33343 45799888899999999998743 456665 456667776664
No 122
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=78.51 E-value=1.6 Score=38.93 Aligned_cols=25 Identities=28% Similarity=0.198 Sum_probs=20.6
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
-.|.||||+|.||...| ++.|.++.
T Consensus 7 ~~~~Gkt~~~~~l~~~l-~~~~~~v~ 31 (134)
T cd03109 7 GTDIGKTVATAILARAL-KEKGYRVA 31 (134)
T ss_pred CCCcCHHHHHHHHHHHH-HHCCCeEE
Confidence 35699999999999999 57777754
No 123
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=78.45 E-value=2.5 Score=39.56 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=30.0
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 66 ~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
-+.|.+++|+| |.|.||||.+.-++..+. ..|.+++.
T Consensus 16 i~~g~i~~i~G----~~GsGKT~l~~~~a~~~~-~~g~~v~y 52 (218)
T cd01394 16 VERGTVTQVYG----PPGTGKTNIAIQLAVETA-GQGKKVAY 52 (218)
T ss_pred ccCCeEEEEEC----CCCCCHHHHHHHHHHHHH-hcCCeEEE
Confidence 36799999999 779999999999988873 55666543
No 124
>PRK05541 adenylylsulfate kinase; Provisional
Probab=78.07 E-value=3.4 Score=37.50 Aligned_cols=35 Identities=29% Similarity=0.552 Sum_probs=28.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
++|++|+++|+ .|.||||++.-|...|. .-+..++
T Consensus 5 ~~~~~I~i~G~----~GsGKst~a~~l~~~l~-~~~~~~~ 39 (176)
T PRK05541 5 PNGYVIWITGL----AGSGKTTIAKALYERLK-LKYSNVI 39 (176)
T ss_pred CCCCEEEEEcC----CCCCHHHHHHHHHHHHH-HcCCcEE
Confidence 56899999996 59999999999999994 4455443
No 125
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=77.96 E-value=1.6 Score=47.04 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=27.2
Q ss_pred CCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcc
Q 010555 78 TPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTF 118 (507)
Q Consensus 78 tPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~F 118 (507)
+.|-.|.||||+|.||.++| .+.|.++... .| ||-+
T Consensus 7 ~~~~s~~GKT~vt~gl~~~l-~~~g~~v~~~--K~--Gpd~ 42 (433)
T PRK13896 7 GGTSSGVGKTVATLATIRAL-EDAGYAVQPA--KA--GPDF 42 (433)
T ss_pred EeCCCCCCHHHHHHHHHHHH-HHCCCeeEEE--ee--CCCC
Confidence 45678999999999999999 5778876332 33 7753
No 126
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=77.96 E-value=3 Score=43.70 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=34.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcC-CcEEEEecCCCCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLD-KKVVTCLRQPSQG 115 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lg-k~a~~~lRePSlG 115 (507)
+.+.+|+||| |-|.|||||.-.|.+-++...+ .+.++++-.|.--
T Consensus 132 ~~~glilI~G----pTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~ 177 (358)
T TIGR02524 132 PQEGIVFITG----ATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEF 177 (358)
T ss_pred ccCCEEEEEC----CCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceE
Confidence 3578999999 4599999999999888843333 3468888888643
No 127
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=77.67 E-value=2.7 Score=38.95 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|.|.+++|+| |.|.||||.+.-++-..
T Consensus 10 ~~g~i~~i~G----~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 10 ERGTITQIYG----PPGSGKTNICMILAVNA 36 (209)
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHH
Confidence 6799999999 78999999998776665
No 128
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=77.59 E-value=2.6 Score=39.81 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=28.7
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
+|..|..||. .|.||||++-.|.+.| ...|.++..-
T Consensus 1 ~g~vIwltGl----sGsGKtTlA~~L~~~L-~~~g~~~~~L 36 (156)
T PF01583_consen 1 KGFVIWLTGL----SGSGKTTLARALERRL-FARGIKVYLL 36 (156)
T ss_dssp S-EEEEEESS----TTSSHHHHHHHHHHHH-HHTTS-EEEE
T ss_pred CCEEEEEECC----CCCCHHHHHHHHHHHH-HHcCCcEEEe
Confidence 3678999997 4999999999999999 4778887653
No 129
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=76.60 E-value=2 Score=38.96 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=21.8
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|++|+|+| |.|.||||++-.|+..+.
T Consensus 1 ~~~~~i~G----~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVG----PSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEEC----CCCCCHHHHHHHHHHHcC
Confidence 56888888 579999999998888773
No 130
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=76.43 E-value=2.8 Score=44.98 Aligned_cols=70 Identities=23% Similarity=0.386 Sum_probs=45.3
Q ss_pred cccccccccccCCCC-cceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHh---hhHHHHHHHHhccCCc-
Q 010555 378 AEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC---VNLARHIANTKAYGAN- 452 (507)
Q Consensus 378 aEKF~dIKCr~sgl~-PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~---~NL~~HIen~~~fGvp- 452 (507)
-++| +++..+|+. .|++|||.-... |. .+.|+ ....+|+..++.+|+|
T Consensus 95 h~~f--~~~~~~g~~~aD~ailVVda~~-----G~--------------------~e~~~~~~~qT~eh~~~~~~~gi~~ 147 (446)
T PTZ00141 95 HRDF--IKNMITGTSQADVAILVVASTA-----GE--------------------FEAGISKDGQTREHALLAFTLGVKQ 147 (446)
T ss_pred hHHH--HHHHHHhhhhcCEEEEEEEcCC-----Cc--------------------eecccCCCccHHHHHHHHHHcCCCe
Confidence 4566 467777776 899998876321 21 11122 2678999999999999
Q ss_pred EEEEecCCCCC----CHHHHHHHHHH
Q 010555 453 VVVAVNMFATD----SKAELNAVRNA 474 (507)
Q Consensus 453 vVVAiN~F~tD----T~aEi~~v~~~ 474 (507)
+||+||+-..+ +++.++.+.+.
T Consensus 148 iiv~vNKmD~~~~~~~~~~~~~i~~~ 173 (446)
T PTZ00141 148 MIVCINKMDDKTVNYSQERYDEIKKE 173 (446)
T ss_pred EEEEEEccccccchhhHHHHHHHHHH
Confidence 56999998732 34555444443
No 131
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=76.16 E-value=10 Score=39.54 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=45.8
Q ss_pred cccccccccccCCC-CcceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEE-E
Q 010555 378 AEKFMNIKCRYSGL-TPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVV-V 455 (507)
Q Consensus 378 aEKF~dIKCr~sgl-~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvV-V 455 (507)
-|+|. ++-.+|+ ..|++++|.-++- |. ...-.+|+..++.+|+|.+ |
T Consensus 85 h~~f~--~~~~~~~~~~D~~ilVvda~~-----g~------------------------~~qt~e~l~~~~~~gi~~iIv 133 (394)
T TIGR00485 85 HADYV--KNMITGAAQMDGAILVVSATD-----GP------------------------MPQTREHILLARQVGVPYIVV 133 (394)
T ss_pred hHHHH--HHHHHHHhhCCEEEEEEECCC-----CC------------------------cHHHHHHHHHHHHcCCCEEEE
Confidence 35665 4445555 4889888876541 11 0134588999999999976 6
Q ss_pred EecCCCCCCHHHH-----HHHHHHHHHcC
Q 010555 456 AVNMFATDSKAEL-----NAVRNAAMAAG 479 (507)
Q Consensus 456 AiN~F~tDT~aEi-----~~v~~~~~~~G 479 (507)
++|+..--+++|. +.+++++++.+
T Consensus 134 vvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 134 FLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred EEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 8999875443332 24667777766
No 132
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=76.11 E-value=2.9 Score=45.57 Aligned_cols=97 Identities=22% Similarity=0.330 Sum_probs=63.6
Q ss_pred CHHHHHHHcCCCC-cccccccCceeeechhhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 30 HISEIAQELNLKP-NHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 30 ~I~~iA~~lgl~~-~~le~YG~~kAKi~l~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
|+-+.|++.|++. .|+|.+=+ .. +..+.|-|||.| ||||||-=+++-| +..|.++.+
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r------------~~--~~~p~vaITGTN------GKTTTTsli~~~l-~~~G~~~~l- 141 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYR------------LS--GEAPIVAITGTN------GKTTTTSLIAHLL-KAAGLDALL- 141 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHH------------hc--CCCCEEEEECCC------chHHHHHHHHHHH-HhcCCCcee-
Confidence 5677788888862 23443322 11 245599999997 9999999999999 589998765
Q ss_pred ecCCCCCCccccccCCCCCCceeeec-----------CcccccccchhhhHHHH-HHhHHHHHHH
Q 010555 109 LRQPSQGPTFGIKGGAAGGGYSQVIP-----------MDEFNLHLTGDIHAITA-ANNLLAAAID 161 (507)
Q Consensus 109 lRePSlGP~FGiKGGAaGGGysQViP-----------mediNLHfTGD~HAIta-A~NLlaA~iD 161 (507)
||=-|...+++.+ +..|-||.|=.|..--+ =-|+-..=+|
T Consensus 142 -------------gGNIG~p~l~~~~~~~~~d~~VlElSSfQL~~~~~~~P~iavilNi~~DHLD 193 (448)
T COG0771 142 -------------GGNIGTPALELLEQAEPADVYVLELSSFQLETTSSLRPEIAVILNISEDHLD 193 (448)
T ss_pred -------------ccccCccHHHhhcccCCCCEEEEEccccccccCccCCccEEEEecCCHHHhh
Confidence 4555655555443 55788998876654322 2344444444
No 133
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=75.60 E-value=2.7 Score=45.74 Aligned_cols=39 Identities=28% Similarity=0.513 Sum_probs=29.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
+.| +||||| |-|+|||||.-.+.+.++ .-+ ..++++=.|
T Consensus 241 ~~G-lilitG----ptGSGKTTtL~a~L~~l~-~~~-~~iiTiEDp 279 (486)
T TIGR02533 241 PHG-IILVTG----PTGSGKTTTLYAALSRLN-TPE-RNILTVEDP 279 (486)
T ss_pred CCC-EEEEEc----CCCCCHHHHHHHHHhccC-CCC-CcEEEEcCC
Confidence 444 999998 459999999988877773 433 457777765
No 134
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=75.51 E-value=17 Score=33.33 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=42.9
Q ss_pred hHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHH-----HHcCCC-----eEEEccccccCchhhHHHHHhhhh
Q 010555 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAA-----MAAGAF-----DAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~-----~~~G~~-----~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
....|++.++.+++|+||+||+-..- +++++.+.+.. ++.+.. .++.... .=|.|-.+|-+.+.+
T Consensus 110 ~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa--~~g~gi~~Ll~~l~~ 184 (188)
T PF00009_consen 110 QTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISA--LTGDGIDELLEALVE 184 (188)
T ss_dssp HHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBT--TTTBTHHHHHHHHHH
T ss_pred ccccccccccccccceEEeeeeccch-hhhHHHHHHHHHHHhccccccCccccceEEEEec--CCCCCHHHHHHHHHH
Confidence 56789999999999999999998666 66665554433 333332 2444444 446677778777654
No 135
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=75.19 E-value=15 Score=31.62 Aligned_cols=55 Identities=7% Similarity=-0.095 Sum_probs=37.3
Q ss_pred ccCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 448 AYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 448 ~fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
..++|+||++|+..-..+. ..+...+++++.+.. +..++. .-|+|-.+|=+.+++
T Consensus 105 ~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~~i~~l~~~l~~ 161 (164)
T cd04145 105 RDEFPMILVGNKADLEHQRKVSREEGQELARKLKIP-YIETSA--KDRLNVDKAFHDLVR 161 (164)
T ss_pred CCCCCEEEEeeCccccccceecHHHHHHHHHHcCCc-EEEeeC--CCCCCHHHHHHHHHH
Confidence 3689999999998654433 234567788888875 554443 447888887776654
No 136
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=74.87 E-value=2.1 Score=43.04 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=24.3
Q ss_pred CCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 79 PTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 79 PTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
-+.=|.||||+.+.|+.+| ++.|+++.+-
T Consensus 8 s~KGGaGKTT~~~~LAs~l-a~~G~~V~lI 36 (231)
T PF07015_consen 8 SSKGGAGKTTAAMALASEL-AARGARVALI 36 (231)
T ss_pred cCCCCCcHHHHHHHHHHHH-HHCCCeEEEE
Confidence 3578999999999999999 5789876653
No 137
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=74.64 E-value=1.8 Score=46.25 Aligned_cols=33 Identities=33% Similarity=0.451 Sum_probs=26.5
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
-|+||+ |.-|.||||+|.||+++| ++.|.++..
T Consensus 5 ~i~I~g---t~s~~GKT~it~~L~~~L-~~~G~~V~~ 37 (451)
T PRK01077 5 ALVIAA---PASGSGKTTVTLGLMRAL-RRRGLRVQP 37 (451)
T ss_pred EEEEEe---CCCCCcHHHHHHHHHHHH-HhCCCCcce
Confidence 466666 568999999999999999 577876543
No 138
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=74.51 E-value=18 Score=29.72 Aligned_cols=60 Identities=10% Similarity=-0.042 Sum_probs=35.4
Q ss_pred HHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhh
Q 010555 442 HIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 442 HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
.+.+....++|++|++|+..--.++..+...+.....+-..++.+ =+..|+|-.+|-+.+
T Consensus 100 ~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 100 EIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPL--SAETGKNIDSAFKIV 159 (161)
T ss_pred HHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEe--ecCCCCCHHHHHHHh
Confidence 333333348999999998766544334444444444444323333 377888888876553
No 139
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=73.81 E-value=2.2 Score=34.11 Aligned_cols=26 Identities=38% Similarity=0.698 Sum_probs=20.6
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+..++++| |.|.||||++..|++.+.
T Consensus 2 ~~~~~l~G----~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVG----PPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEEC----CCCCcHHHHHHHHHhccC
Confidence 34566666 689999999999988884
No 140
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=73.79 E-value=11 Score=38.54 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=41.1
Q ss_pred hHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccC
Q 010555 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHG 492 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~G 492 (507)
...+-|+.+++.|++|.|-.-.|..++.+|++.+.+++.+.|+..+.++..+..|
T Consensus 150 ~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~ 204 (318)
T TIGR03470 150 RAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYE 204 (318)
T ss_pred HHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 4444455666789887765555778999999999999999999767676666543
No 141
>PRK00784 cobyric acid synthase; Provisional
Probab=73.62 E-value=2.1 Score=46.12 Aligned_cols=32 Identities=41% Similarity=0.545 Sum_probs=26.3
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
-|+||| |..|.||||+|.||+++| .+.|.++.
T Consensus 4 ~ifItG---T~T~vGKT~vt~~L~~~l-~~~G~~v~ 35 (488)
T PRK00784 4 ALMVQG---TASDAGKSTLVAGLCRIL-ARRGYRVA 35 (488)
T ss_pred eEEEEe---CCCCCcHHHHHHHHHHHH-HHCCCeEe
Confidence 467766 567999999999999999 57787755
No 142
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=73.23 E-value=4.2 Score=44.05 Aligned_cols=35 Identities=23% Similarity=0.137 Sum_probs=28.5
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.++|+++| |-|.|||||+.-|+..| .+.|++..+.
T Consensus 100 ~~vi~lvG----~~GvGKTTtaaKLA~~l-~~~G~kV~lV 134 (429)
T TIGR01425 100 QNVIMFVG----LQGSGKTTTCTKLAYYY-QRKGFKPCLV 134 (429)
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHH-HHCCCCEEEE
Confidence 36888888 57999999999999999 4778876544
No 143
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=73.16 E-value=4.9 Score=40.12 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=29.5
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
+.+|+||| |-|+|||||.-.|.+.+. ..+ ..++.+=+|.
T Consensus 80 ~GlilisG----~tGSGKTT~l~all~~i~-~~~-~~iitiEdp~ 118 (264)
T cd01129 80 HGIILVTG----PTGSGKTTTLYSALSELN-TPE-KNIITVEDPV 118 (264)
T ss_pred CCEEEEEC----CCCCcHHHHHHHHHhhhC-CCC-CeEEEECCCc
Confidence 45899998 459999999999988884 433 4577776663
No 144
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=73.14 E-value=4.6 Score=42.79 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=31.7
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSl 114 (507)
..+||||| |-|+|||||.-.|.+.++.......++++=+|.=
T Consensus 149 ~GlilI~G----~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E 190 (372)
T TIGR02525 149 AGLGLICG----ETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIE 190 (372)
T ss_pred CCEEEEEC----CCCCCHHHHHHHHHHHHHhcCCCceEEEEecCch
Confidence 44899998 4599999999999998853233456888877754
No 145
>PRK15453 phosphoribulokinase; Provisional
Probab=73.13 E-value=4 Score=42.36 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=26.0
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
+..+|.|||- .|.||||++-.|.+.|+ +.+.+
T Consensus 4 k~piI~ItG~----SGsGKTTva~~l~~if~-~~~~~ 35 (290)
T PRK15453 4 KHPIIAVTGS----SGAGTTTVKRAFEKIFR-RENIN 35 (290)
T ss_pred CCcEEEEECC----CCCCHHHHHHHHHHHHh-hcCCC
Confidence 4568999995 59999999999999994 66643
No 146
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=72.68 E-value=5.2 Score=37.77 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=28.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+.|++++|+| |.|.||||.+.-++.... ..|.+++
T Consensus 21 ~~g~i~~i~G----~~GsGKT~l~~~la~~~~-~~~~~v~ 55 (225)
T PRK09361 21 ERGTITQIYG----PPGSGKTNICLQLAVEAA-KNGKKVI 55 (225)
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHH-HCCCeEE
Confidence 6799999999 789999999999987773 4455544
No 147
>PF05729 NACHT: NACHT domain
Probab=72.48 E-value=3.5 Score=35.49 Aligned_cols=25 Identities=36% Similarity=0.411 Sum_probs=21.3
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++++|+| +.|.||||+..-+++.+.
T Consensus 1 r~l~I~G----~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISG----EPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEEC----CCCCChHHHHHHHHHHHH
Confidence 4677777 689999999999999994
No 148
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=72.11 E-value=2.7 Score=38.82 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=16.0
Q ss_pred EEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|.++| |-|.||||++--|...|
T Consensus 2 igi~G----~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAG----GSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEEC----CCCCCHHHHHHHHHHHh
Confidence 44555 57999999997776555
No 149
>PHA00729 NTP-binding motif containing protein
Probab=72.09 E-value=2.7 Score=41.95 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=19.9
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
-|++|| || |.||||++..|++.++
T Consensus 19 nIlItG---~p-GvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFG---KQ-GSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEC---CC-CCCHHHHHHHHHHHHH
Confidence 467777 34 9999999999999884
No 150
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=72.02 E-value=20 Score=29.86 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=38.1
Q ss_pred hHHHHHHHHhc---cCCcEEEEecCCCC--CCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhh
Q 010555 438 NLARHIANTKA---YGANVVVAVNMFAT--DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 438 NL~~HIen~~~---fGvpvVVAiN~F~t--DT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
.+.+.++.+.. .+.|++|++|+... +.....+.+++++++.+.. ++.+.... |+|-.++-+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~--~~~i~~~~~~i 157 (159)
T cd00154 90 NLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLL-FFETSAKT--GENVEELFQSL 157 (159)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCe-EEEEecCC--CCCHHHHHHHH
Confidence 33444444444 46999999999766 3333345567777777775 55554433 45666665544
No 151
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=71.97 E-value=63 Score=28.43 Aligned_cols=106 Identities=16% Similarity=0.207 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhcCCCCeEEeecccccccc---cccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhcc
Q 010555 349 SIVADKIALKLVGPGGFVVTEAGFGADIG---AEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYL 425 (507)
Q Consensus 349 SviAtk~ALklag~~dyVVTEAGFGaDlG---aEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~ 425 (507)
+.++.++.-... ++-|+-.|++-+.- .+++-.. ....+||.|||-. |......
T Consensus 24 ~~l~~~l~~~~~---~~~v~n~g~~G~~~~~~~~~l~~~---~~~~~pd~v~i~~---------G~ND~~~--------- 79 (177)
T cd01822 24 ALLQKRLDARGI---DVTVINAGVSGDTTAGGLARLPAL---LAQHKPDLVILEL---------GGNDGLR--------- 79 (177)
T ss_pred HHHHHHHHHhCC---CeEEEecCcCCcccHHHHHHHHHH---HHhcCCCEEEEec---------cCccccc---------
Confidence 445555543223 67777777764432 2333211 2336899777643 3332111
Q ss_pred ccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCC----CHHH-HHHHHHHHHHcCCC
Q 010555 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATD----SKAE-LNAVRNAAMAAGAF 481 (507)
Q Consensus 426 ~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tD----T~aE-i~~v~~~~~~~G~~ 481 (507)
..+.+..++ ||++=|+.+++.+.++|+.--..+.. ..++ -+.++++|++.++.
T Consensus 80 ~~~~~~~~~---~l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 137 (177)
T cd01822 80 GIPPDQTRA---NLRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAAIYPELAEEYGVP 137 (177)
T ss_pred CCCHHHHHH---HHHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHHHHHHHHHHcCCc
Confidence 123444544 45555666777788877652112221 1223 35667889999986
No 152
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=71.89 E-value=3.4 Score=37.74 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.5
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|++|+++| |.|.||||.+--|.+.+.
T Consensus 2 ~~~i~l~G----~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNG----GSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEEC----CCCCCHHHHHHHHHHhhC
Confidence 78999998 469999999999988763
No 153
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=71.55 E-value=20 Score=30.46 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=34.6
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT-~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.++|+||+.|+..--. ....+.+.++++..+.. +..++ ++-|+|-.+|=+.++
T Consensus 105 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~ 158 (162)
T cd04138 105 DDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIP-YIETS--AKTRQGVEEAFYTLV 158 (162)
T ss_pred CCCCEEEEEECcccccceecHHHHHHHHHHhCCe-EEEec--CCCCCCHHHHHHHHH
Confidence 5899999999965422 22344566777777875 44443 566777777665554
No 154
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=71.43 E-value=11 Score=37.73 Aligned_cols=101 Identities=16% Similarity=0.265 Sum_probs=66.0
Q ss_pred HHHHHHHhc-CCCCeEEeecccccccccccccccccccCCCCcceEE---EEeeeh-HHHhcCCCCCccCCCCCchhccc
Q 010555 352 ADKIALKLV-GPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAV---IVATIR-ALKMHGGGPQVVAGKPLDHAYLN 426 (507)
Q Consensus 352 Atk~ALkla-g~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavV---lVaTvR-ALK~HGG~~~~~~g~pL~~~~~~ 426 (507)
-+++.-|.. |. ||+||-..|.++. .++|++ .||..|+..-.++ -+.+.+ +++|.- .+|-.+|+++.+
T Consensus 147 ~~~L~~K~~aGA-~f~iTQ~~fd~~~-~~~~~~-~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~-----~~Gv~vP~~~~~ 218 (272)
T TIGR00676 147 IENLKRKVDAGA-DYAITQLFFDNDD-YYRFVD-RCRAAGIDVPIIPGIMPITNFKQLLRFAE-----RCGAEIPAWLVK 218 (272)
T ss_pred HHHHHHHHHcCC-CeEeeccccCHHH-HHHHHH-HHHHcCCCCCEecccCCcCCHHHHHHHHh-----ccCCCCCHHHHH
Confidence 344555653 44 7999999999976 778888 8999988743322 234455 445543 234455665443
Q ss_pred ------cCHHHH-HHHhhhHHHHHHHHhccCCc--EEEEecCC
Q 010555 427 ------ENVALV-EAGCVNLARHIANTKAYGAN--VVVAVNMF 460 (507)
Q Consensus 427 ------enl~al-~~G~~NL~~HIen~~~fGvp--vVVAiN~F 460 (507)
++.+++ +.|++--...++.++.+|++ =+..+|++
T Consensus 219 ~l~~~~~~~~~~~~~gi~~~~~~~~~l~~~g~~GiHl~t~n~~ 261 (272)
T TIGR00676 219 RLEKYDDDPEEVRAVGIEYATDQCEDLIAEGVPGIHFYTLNRA 261 (272)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCH
Confidence 334433 47888888889999888887 45567775
No 155
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=71.35 E-value=4.4 Score=39.95 Aligned_cols=46 Identities=35% Similarity=0.468 Sum_probs=39.9
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccc
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FG 119 (507)
+|++++++| |.|.||||+.--|-+.. .+....-.+=|+|=-|=+=|
T Consensus 3 ~G~l~vlsg----PSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G 48 (191)
T COG0194 3 KGLLIVLSG----PSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDG 48 (191)
T ss_pred CceEEEEEC----CCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCC
Confidence 699999998 89999999999998888 57888889999998885544
No 156
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=71.33 E-value=7.4 Score=31.70 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.++.|+++| |.|.||||+..-+.+.+
T Consensus 17 ~~~~~v~i~G----~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 17 PPPKNLLLYG----PPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCCeEEEEC----CCCCCHHHHHHHHHHHh
Confidence 4678899988 67999999998888887
No 157
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=71.28 E-value=20 Score=31.76 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=51.6
Q ss_pred CeEEeeccccccc---ccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHH
Q 010555 364 GFVVTEAGFGADI---GAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLA 440 (507)
Q Consensus 364 dyVVTEAGFGaDl---GaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~ 440 (507)
++.|...|.+.+. ..+++-.+. ..+||.|||-. |...... ..+.+..++++.+|.
T Consensus 21 ~~~v~n~g~~G~~~~~~~~~l~~~~----~~~pd~vvl~~---------G~ND~~~---------~~~~~~~~~~l~~li 78 (169)
T cd01828 21 DVKVANRGISGDTTRGLLARLDEDV----ALQPKAIFIMI---------GINDLAQ---------GTSDEDIVANYRTIL 78 (169)
T ss_pred CCceEecCcccccHHHHHHHHHHHh----ccCCCEEEEEe---------eccCCCC---------CCCHHHHHHHHHHHH
Confidence 5555555554433 223332222 46899988865 4333211 245677777777776
Q ss_pred HHHHHHhccCCcEEEEecCCCC-----CCHH----HHHHHHHHHHHcCCC
Q 010555 441 RHIANTKAYGANVVVAVNMFAT-----DSKA----ELNAVRNAAMAAGAF 481 (507)
Q Consensus 441 ~HIen~~~fGvpvVVAiN~F~t-----DT~a----Ei~~v~~~~~~~G~~ 481 (507)
+.+... .-+.+||+ +.-.+. ...+ --+.++++|++.|+.
T Consensus 79 ~~~~~~-~~~~~vi~-~~~~p~~~~~~~~~~~~~~~n~~l~~~a~~~~~~ 126 (169)
T cd01828 79 EKLRKH-FPNIKIVV-QSILPVGELKSIPNEQIEELNRQLAQLAQQEGVT 126 (169)
T ss_pred HHHHHH-CCCCeEEE-EecCCcCccCcCCHHHHHHHHHHHHHHHHHCCCE
Confidence 655543 25777666 333333 2333 334578889988885
No 158
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=71.26 E-value=3.2 Score=44.77 Aligned_cols=35 Identities=31% Similarity=0.284 Sum_probs=26.4
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.+|+++| |.|+|||||+.-|+..|..+.|++..+.
T Consensus 100 ~vi~~vG----~~GsGKTTtaakLA~~l~~~~g~kV~lV 134 (428)
T TIGR00959 100 TVILMVG----LQGSGKTTTCGKLAYYLKKKQGKKVLLV 134 (428)
T ss_pred EEEEEEC----CCCCcHHHHHHHHHHHHHHhCCCeEEEE
Confidence 4566664 6799999999999999832568876654
No 159
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=71.21 E-value=12 Score=41.62 Aligned_cols=98 Identities=27% Similarity=0.357 Sum_probs=60.7
Q ss_pred cccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEE
Q 010555 376 IGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVV 455 (507)
Q Consensus 376 lGaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVV 455 (507)
-|=|=|.+.-.|-+.+.+ .||||.-+ .+|=.|+ -+|| |+.+|.+|+|+||
T Consensus 63 PGHeAFt~mRaRGa~vtD-IaILVVa~----dDGv~pQ--------------TiEA-----------I~hak~a~vP~iV 112 (509)
T COG0532 63 PGHEAFTAMRARGASVTD-IAILVVAA----DDGVMPQ--------------TIEA-----------INHAKAAGVPIVV 112 (509)
T ss_pred CcHHHHHHHHhcCCcccc-EEEEEEEc----cCCcchh--------------HHHH-----------HHHHHHCCCCEEE
Confidence 466778887778776664 55555432 2322221 1233 7778999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHcCCC------eEEEccccccCchhhHHHHHhhh
Q 010555 456 AVNMFATDSKAELNAVRNAAMAAGAF------DAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 456 AiN~F~tDT~aEi~~v~~~~~~~G~~------~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
|+|+-.-- ++..+.++....+.|.. ++.+-..=|+.|+|-.+|=+.++
T Consensus 113 AiNKiDk~-~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 113 AINKIDKP-EANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELIL 166 (509)
T ss_pred EEecccCC-CCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHH
Confidence 99985433 33344454444445542 24555666899999988866554
No 160
>PLN00043 elongation factor 1-alpha; Provisional
Probab=71.17 E-value=6.4 Score=42.33 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=49.3
Q ss_pred ccccccccccccCCCC-cceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHh---hhHHHHHHHHhccCCc
Q 010555 377 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC---VNLARHIANTKAYGAN 452 (507)
Q Consensus 377 GaEKF~dIKCr~sgl~-PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~---~NL~~HIen~~~fGvp 452 (507)
|-|+|+ +...+|+. +|++|||.-... |.. +.|+ ....+|+.-++.+|+|
T Consensus 94 Gh~df~--~~~~~g~~~aD~aIlVVda~~----G~~---------------------e~g~~~~~qT~eh~~~~~~~gi~ 146 (447)
T PLN00043 94 GHRDFI--KNMITGTSQADCAVLIIDSTT----GGF---------------------EAGISKDGQTREHALLAFTLGVK 146 (447)
T ss_pred CHHHHH--HHHHhhhhhccEEEEEEEccc----Cce---------------------ecccCCCchHHHHHHHHHHcCCC
Confidence 446665 34455554 899999987542 211 1111 2568899999999996
Q ss_pred -EEEEecCCCCCC----HHH----HHHHHHHHHHcCC
Q 010555 453 -VVVAVNMFATDS----KAE----LNAVRNAAMAAGA 480 (507)
Q Consensus 453 -vVVAiN~F~tDT----~aE----i~~v~~~~~~~G~ 480 (507)
+||++|+-...+ .+. ++.+++++++.|.
T Consensus 147 ~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~ 183 (447)
T PLN00043 147 QMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 183 (447)
T ss_pred cEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 588999975321 111 5567777887784
No 161
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=71.05 E-value=3.9 Score=32.97 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=16.4
Q ss_pred CCCCCcchhHhhHHHHHh
Q 010555 81 PLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~ 98 (507)
|.|.|||++.+.+...+.
T Consensus 8 ~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 8 PTGSGKTLAALLPILELL 25 (144)
T ss_pred CCCCchhHHHHHHHHHHH
Confidence 679999999999999884
No 162
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=71.03 E-value=4.2 Score=37.94 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=20.0
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+|.|+| +.|.||||++--|.+.|.
T Consensus 1 ii~i~G----~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAG----PSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 366777 569999999999999984
No 163
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=70.90 E-value=5.5 Score=36.53 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=26.8
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
..|++|+++|.+ |.||||++-.|...|. .-|..
T Consensus 16 ~~~~~i~i~G~~----GsGKstla~~l~~~l~-~~~~~ 48 (184)
T TIGR00455 16 HRGVVIWLTGLS----GSGKSTIANALEKKLE-SKGYR 48 (184)
T ss_pred CCCeEEEEECCC----CCCHHHHHHHHHHHHH-HcCCc
Confidence 568999999975 9999999999998883 44543
No 164
>PLN02348 phosphoribulokinase
Probab=70.70 E-value=5.9 Score=42.73 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=20.9
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
-+|-|+| +.|.||||++-.|.+.|+
T Consensus 50 ~IIGIaG----~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 50 VVIGLAA----DSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred EEEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 3566777 579999999999999995
No 165
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=70.41 E-value=3 Score=47.04 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=27.2
Q ss_pred EEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEec
Q 010555 72 VVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lR 110 (507)
|+|| +|..|.|||++|.||.++| .+.|.++. ..|
T Consensus 5 l~I~---~T~t~~GKT~vslgL~~~L-~~~G~~Vg-~fK 38 (684)
T PRK05632 5 IYLA---PTGTGVGLTSVSLGLMRAL-ERKGVKVG-FFK 38 (684)
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHH-HhCCCeEE-EeC
Confidence 5554 6788999999999999999 57788744 456
No 166
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=70.11 E-value=5.7 Score=39.38 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=31.7
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
.+|..|..||. .|.||||.+-.|.+.| ...|+.+.+
T Consensus 21 ~~~~viW~TGL----SGsGKSTiA~ale~~L-~~~G~~~y~ 56 (197)
T COG0529 21 QKGAVIWFTGL----SGSGKSTIANALEEKL-FAKGYHVYL 56 (197)
T ss_pred CCCeEEEeecC----CCCCHHHHHHHHHHHH-HHcCCeEEE
Confidence 56889999997 5999999999999999 578988775
No 167
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=70.04 E-value=27 Score=31.32 Aligned_cols=62 Identities=18% Similarity=0.126 Sum_probs=41.5
Q ss_pred hHHHHHHHHhcc---CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHH
Q 010555 438 NLARHIANTKAY---GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKE 499 (507)
Q Consensus 438 NL~~HIen~~~f---GvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~L 499 (507)
.+.+|++.+.+. ++|+++-.+-..+-+.+++..+.+.+++.|+.-+-.+..|..|+.....+
T Consensus 98 ~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~ 162 (201)
T cd00945 98 EVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDV 162 (201)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHH
Confidence 566777776664 89988877754445677888777777889997444555565555444433
No 168
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=69.37 E-value=6.2 Score=39.72 Aligned_cols=44 Identities=25% Similarity=0.139 Sum_probs=31.5
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcc
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTF 118 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~F 118 (507)
|.++|.+ ..-|.||||++..|+++| ++.|++..+.=-.|+ .|+|
T Consensus 3 ~i~~i~~---~KGGvGKSt~a~~la~~l-~~~g~~vl~iD~D~~-n~~~ 46 (241)
T PRK13886 3 KIHMVLQ---GKGGVGKSFIAATIAQYK-ASKGQKPLCIDTDPV-NATF 46 (241)
T ss_pred eEEEEec---CCCCCcHHHHHHHHHHHH-HhCCCCEEEEECCCC-Cchh
Confidence 3444443 578999999999999999 588988654435555 3443
No 169
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=69.18 E-value=6.9 Score=36.94 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=25.8
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010555 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 66 ~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a 105 (507)
=+.|.+++|+| |.|.||||++.-++-... .-|+++
T Consensus 17 i~~G~~~~i~G----~~G~GKT~l~~~~~~~~~-~~g~~~ 51 (229)
T TIGR03881 17 IPRGFFVAVTG----EPGTGKTIFCLHFAYKGL-RDGDPV 51 (229)
T ss_pred CcCCeEEEEEC----CCCCChHHHHHHHHHHHH-hcCCeE
Confidence 36799999999 779999999987654331 336544
No 170
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=68.86 E-value=4.1 Score=38.99 Aligned_cols=30 Identities=40% Similarity=0.548 Sum_probs=21.0
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a 105 (507)
+|++-| |-|.|||||..=|+.-+. ..|++.
T Consensus 3 vi~lvG----ptGvGKTTt~aKLAa~~~-~~~~~v 32 (196)
T PF00448_consen 3 VIALVG----PTGVGKTTTIAKLAARLK-LKGKKV 32 (196)
T ss_dssp EEEEEE----STTSSHHHHHHHHHHHHH-HTT--E
T ss_pred EEEEEC----CCCCchHhHHHHHHHHHh-hccccc
Confidence 444444 669999999999999995 335553
No 171
>PF13245 AAA_19: Part of AAA domain
Probab=68.82 E-value=4.6 Score=33.34 Aligned_cols=25 Identities=40% Similarity=0.504 Sum_probs=21.5
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.++.+|+| |.|.|||||.+-+...+
T Consensus 10 ~~~~vv~g----~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQG----PPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEEC----CCCCCHHHHHHHHHHHH
Confidence 56777776 89999999999998888
No 172
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=68.42 E-value=7.9 Score=36.01 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=29.3
Q ss_pred hhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 58 SVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 58 ~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
+.+++.-....++.|+++| |.|.||||++..+.+.+. ..+.+
T Consensus 27 ~~l~~~~~~~~~~~lll~G----~~G~GKT~la~~~~~~~~-~~~~~ 68 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWG----ESGSGKSHLLQAACAAAE-ERGKS 68 (226)
T ss_pred HHHHHHHhcCCCCeEEEEC----CCCCCHHHHHHHHHHHHH-hcCCc
Confidence 3444432234577899999 669999999999998874 44543
No 173
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=68.18 E-value=4.1 Score=33.80 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=17.1
Q ss_pred EEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|+++|+ .|.||||++--|.+-+
T Consensus 1 I~i~G~----~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGI----PGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEES----TTSSHHHHHHHHHHHH
T ss_pred CEEECC----CCCCHHHHHHHHHHHH
Confidence 566665 5999999988887765
No 174
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=67.77 E-value=3.5 Score=38.40 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=21.9
Q ss_pred EEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 72 VVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
|-|+| |.|.||||++--|.+.|+ ..|..
T Consensus 2 IgI~G----~sgSGKTTla~~L~~~L~-~~~~~ 29 (194)
T PF00485_consen 2 IGIAG----PSGSGKTTLAKRLAQILN-KRGIP 29 (194)
T ss_dssp EEEEE----STTSSHHHHHHHHHHHHT-TCTTT
T ss_pred EEEEC----CCCCCHHHHHHHHHHHhC-ccCcC
Confidence 45555 579999999999999994 55554
No 175
>PRK13764 ATPase; Provisional
Probab=67.58 E-value=6.6 Score=44.34 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=29.1
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
..+.||||| |.|.||||+...|++.++ .-+ +.+.++-+|
T Consensus 256 ~~~~ILIsG----~TGSGKTTll~AL~~~i~-~~~-riV~TiEDp 294 (602)
T PRK13764 256 RAEGILIAG----APGAGKSTFAQALAEFYA-DMG-KIVKTMESP 294 (602)
T ss_pred cCCEEEEEC----CCCCCHHHHHHHHHHHHh-hCC-CEEEEECCC
Confidence 356799999 459999999999999995 444 345466554
No 176
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=67.53 E-value=3.1 Score=34.86 Aligned_cols=22 Identities=41% Similarity=0.747 Sum_probs=17.7
Q ss_pred EEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|+|+| |.|.||||++-=|++.+
T Consensus 2 I~I~G----~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISG----PPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEE----STTSSHHHHHHHHHHHH
T ss_pred EEEEC----CCCCCHHHHHHHHHHHH
Confidence 56666 56999999998888776
No 177
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=67.41 E-value=7.6 Score=41.40 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=24.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk 103 (507)
++|+.|++.| |-|.|||||..-|+..+..+.|.
T Consensus 135 ~~g~ii~lvG----ptGvGKTTtiakLA~~~~~~~G~ 167 (374)
T PRK14722 135 ERGGVFALMG----PTGVGKTTTTAKLAARCVMRFGA 167 (374)
T ss_pred cCCcEEEEEC----CCCCCHHHHHHHHHHHHHHhcCC
Confidence 4578888877 56999999999999876334454
No 178
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=67.36 E-value=19 Score=31.87 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=43.0
Q ss_pred hhHHHHHHHHhcc----CCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 437 VNLARHIANTKAY----GANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 437 ~NL~~HIen~~~f----GvpvVVAiN~F~tDT~--aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.++...++.++.+ +.|++++.|+..--.+ -..+.+.++|++.+++ + .+..++=|+|-.+|-+.+++
T Consensus 103 ~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~--~e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 103 LNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIP-Y--FETSAATGTNVEKAVERLLD 174 (180)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCe-E--EEEeCCCCCCHHHHHHHHHH
Confidence 3444445555442 6899999998764322 1234567888888875 3 46678888888887766543
No 179
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=67.19 E-value=30 Score=29.00 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=39.3
Q ss_pred HHHHHHhccCCcEEEEecCCCCC-CHHHHHHHHHHHHHcC-CCeEEEccccccCchhhHHHHHhhh
Q 010555 441 RHIANTKAYGANVVVAVNMFATD-SKAELNAVRNAAMAAG-AFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 441 ~HIen~~~fGvpvVVAiN~F~tD-T~aEi~~v~~~~~~~G-~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
+.++.++.++.|+++++|+.... ++++++.+.+...+.. ...++.++ +.=++|-.+|-+.+.
T Consensus 102 ~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~~~~l~~~l~ 165 (168)
T cd04163 102 FILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPIS--ALKGENVDELLEEIV 165 (168)
T ss_pred HHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEE--eccCCChHHHHHHHH
Confidence 34455666799999999998766 5666666666555443 32344333 445677777666554
No 180
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=67.15 E-value=24 Score=31.22 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=35.2
Q ss_pred hHHHHHHHHhc---cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHH
Q 010555 438 NLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEP 500 (507)
Q Consensus 438 NL~~HIen~~~---fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA 500 (507)
++.+.++++++ .++|+||+.|+.....+.. .+.+++++.+.++.-+-+|. .-|+|-.++-
T Consensus 94 ~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa---~~~~~i~~~~ 158 (168)
T cd01866 94 HLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSA---KTASNVEEAF 158 (168)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC---CCCCCHHHHH
Confidence 45555555554 4899999999976542222 34466778888886333343 3344444433
No 181
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=66.77 E-value=4.6 Score=37.19 Aligned_cols=43 Identities=33% Similarity=0.414 Sum_probs=34.0
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlG 115 (507)
+|.|+++| |.|.||||+.--|.+.+..+++.-..-+-|.|-.|
T Consensus 2 ~r~ivl~G----psg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~ 44 (183)
T PF00625_consen 2 RRPIVLVG----PSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPG 44 (183)
T ss_dssp SSEEEEES----STTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTT
T ss_pred CCEEEEEC----CCCCCHHHHHHHHHHhcccccccceeecccCCccc
Confidence 57777766 78999999999999998656777777788998665
No 182
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=66.67 E-value=4.5 Score=36.55 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=17.7
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.+|.| |.|.|||||...+...+
T Consensus 19 ~~~i~G----pPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQG----PPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-----STTSSHHHHHHHHHHHH
T ss_pred CEEEEC----CCCCChHHHHHHHHHHh
Confidence 566665 56999999999998888
No 183
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=66.62 E-value=6.7 Score=38.13 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=30.1
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
.++.|+|+|- -|+||||+.--|.+.+. .. ...++++=+|
T Consensus 126 ~~~~ili~G~----tGSGKTT~l~all~~i~-~~-~~~iv~iEd~ 164 (270)
T PF00437_consen 126 GRGNILISGP----TGSGKTTLLNALLEEIP-PE-DERIVTIEDP 164 (270)
T ss_dssp TTEEEEEEES----TTSSHHHHHHHHHHHCH-TT-TSEEEEEESS
T ss_pred cceEEEEECC----CccccchHHHHHhhhcc-cc-ccceEEeccc
Confidence 4789999995 49999999999988884 33 4567776653
No 184
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=66.53 E-value=28 Score=30.04 Aligned_cols=52 Identities=8% Similarity=-0.173 Sum_probs=33.8
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhh
Q 010555 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
.++|+||+.|+..-..+.+ .+.+.+++++.|.+ +..++... |.|-.+|-+.+
T Consensus 105 ~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~--~~~v~~l~~~l 158 (162)
T cd04106 105 GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLP-LFRTSVKD--DFNVTELFEYL 158 (162)
T ss_pred CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCC--CCCHHHHHHHH
Confidence 4899999999987543333 34566778888886 55555544 45655554443
No 185
>PRK00049 elongation factor Tu; Reviewed
Probab=66.35 E-value=34 Score=36.00 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=27.7
Q ss_pred hHHHHHHHHhccCCcEE-EEecCCCCCCHHH----HH-HHHHHHHHcC
Q 010555 438 NLARHIANTKAYGANVV-VAVNMFATDSKAE----LN-AVRNAAMAAG 479 (507)
Q Consensus 438 NL~~HIen~~~fGvpvV-VAiN~F~tDT~aE----i~-~v~~~~~~~G 479 (507)
....|++.++.+|+|++ |++|+..-=+++| +. .++++.+..|
T Consensus 115 qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 115 QTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 45678999999999986 6999986533333 21 3445554444
No 186
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=66.30 E-value=3 Score=41.90 Aligned_cols=18 Identities=50% Similarity=0.713 Sum_probs=17.1
Q ss_pred CCCCCcchhHhhHHHHHh
Q 010555 81 PLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~ 98 (507)
|+|.||||++-.|++.|+
T Consensus 12 PagsGKsTvak~lA~~Lg 29 (222)
T COG0283 12 PAGSGKSTVAKILAEKLG 29 (222)
T ss_pred CCccChHHHHHHHHHHhC
Confidence 999999999999999995
No 187
>PRK14738 gmk guanylate kinase; Provisional
Probab=66.20 E-value=6.5 Score=37.35 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=20.6
Q ss_pred CCCCCcEEEEeccCCCCCCCCcchhHhhHH
Q 010555 65 GSADGYYVVVGGITPTPLGEGKSTTTVGLC 94 (507)
Q Consensus 65 ~~~~GklIlVTaitPTP~GEGKTTttIGL~ 94 (507)
+.+.+++|+++| |.|.||||+.--|.
T Consensus 9 ~~~~~~~ivi~G----psG~GK~tl~~~L~ 34 (206)
T PRK14738 9 KPAKPLLVVISG----PSGVGKDAVLARMR 34 (206)
T ss_pred CCCCCeEEEEEC----cCCCCHHHHHHHHH
Confidence 346799999998 67999999765553
No 188
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=66.04 E-value=9.5 Score=38.45 Aligned_cols=41 Identities=29% Similarity=0.248 Sum_probs=32.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
..++.|.||| |-|.||||+..-|+..+. ..|.++.+.-=.|
T Consensus 32 ~~~~~i~i~G----~~G~GKttl~~~l~~~~~-~~~~~v~~i~~D~ 72 (300)
T TIGR00750 32 GNAHRVGITG----TPGAGKSTLLEALGMELR-RRGLKVAVIAVDP 72 (300)
T ss_pred CCceEEEEEC----CCCCCHHHHHHHHHHHHH-HCCCeEEEEecCC
Confidence 4688898886 579999999999999994 7788876544444
No 189
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=66.01 E-value=7.2 Score=42.53 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=27.2
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.+++|+++| |.|.|||||+.-|+..+....|++..+.
T Consensus 222 ~~~vi~lvG----ptGvGKTTtaaKLA~~~~~~~G~~V~Li 258 (432)
T PRK12724 222 QRKVVFFVG----PTGSGKTTSIAKLAAKYFLHMGKSVSLY 258 (432)
T ss_pred CCeEEEEEC----CCCCCHHHHHHHHHHHHHHhcCCeEEEe
Confidence 356788887 6799999999999976533457665443
No 190
>PRK00098 GTPase RsgA; Reviewed
Probab=65.87 E-value=41 Score=34.06 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=40.8
Q ss_pred HHHHHHHHhccCCcEEEEecCCCC-CCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhh
Q 010555 439 LARHIANTKAYGANVVVAVNMFAT-DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 439 L~~HIen~~~fGvpvVVAiN~F~t-DT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
+.+-+..++..++|+|+++|+-.- +..++++...++.++.|.. +...+. .=|+|-.+|-+.+
T Consensus 100 idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~-v~~vSA--~~g~gi~~L~~~l 162 (298)
T PRK00098 100 LDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYD-VLELSA--KEGEGLDELKPLL 162 (298)
T ss_pred HHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCe-EEEEeC--CCCccHHHHHhhc
Confidence 456666677789999999999765 3455666666777777875 433332 3456666666543
No 191
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=65.87 E-value=19 Score=40.57 Aligned_cols=64 Identities=20% Similarity=0.206 Sum_probs=40.4
Q ss_pred hHHHHHHHHhccCCcE-EEEecCCCCCCHHHHHH----HHHHHHHcC---CCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTKAYGANV-VVAVNMFATDSKAELNA----VRNAAMAAG---AFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~fGvpv-VVAiN~F~tDT~aEi~~----v~~~~~~~G---~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.-..|++.++.+|+|. ||++|+..--++++++. +++++.+.| ++ ++.++. .-|+|-.+|-+.+.
T Consensus 91 qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~-ii~VSA--~tG~gI~~L~~~L~ 162 (614)
T PRK10512 91 QTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAK-LFVTAA--TEGRGIDALREHLL 162 (614)
T ss_pred HHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEeC--CCCCCCHHHHHHHH
Confidence 4457778888999995 79999987655555544 445555445 33 343333 34677777766553
No 192
>PRK06762 hypothetical protein; Provisional
Probab=65.58 E-value=5.1 Score=35.85 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=20.7
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.++|++||. .|.||||.+--|.+.+
T Consensus 2 ~~li~i~G~----~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGN----SGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECC----CCCCHHHHHHHHHHHh
Confidence 368888885 5999999998887777
No 193
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=65.46 E-value=8 Score=41.45 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=21.5
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.|++|++.| | -|.|||||+.-|+-.+
T Consensus 220 ~~~~i~~vG--p--tGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 220 QGGVVALVG--P--TGVGKTTTLAKLAARY 245 (424)
T ss_pred CCcEEEEEC--C--CCCCHHHHHHHHHHHH
Confidence 367777775 4 4999999999999888
No 194
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=65.24 E-value=9.4 Score=36.42 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=30.8
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcE-EEEecCC
Q 010555 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV-VTCLRQP 112 (507)
Q Consensus 66 ~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a-~~~lReP 112 (507)
-|.|.+++|+| |.|.||||.+..++.... +-|.+. ++.+.++
T Consensus 22 ~~~g~~~~i~G----~~GsGKt~l~~~~~~~~~-~~g~~~~y~~~e~~ 64 (234)
T PRK06067 22 IPFPSLILIEG----DHGTGKSVLSQQFVYGAL-KQGKKVYVITTENT 64 (234)
T ss_pred CcCCcEEEEEC----CCCCChHHHHHHHHHHHH-hCCCEEEEEEcCCC
Confidence 47899999998 679999999999865442 346654 4555554
No 195
>PRK13974 thymidylate kinase; Provisional
Probab=65.10 E-value=9.7 Score=36.28 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=34.2
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCC----cEEEEecCCCCCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK----KVVTCLRQPSQGP 116 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk----~a~~~lRePSlGP 116 (507)
.|++|.+-|+ -|.||||.+--|.+-|. .-|+ ..++..|+|.-.|
T Consensus 2 ~g~~i~~eG~----dGsGKsT~~~~l~~~l~-~~g~~~~~~~~~~~~~p~~~~ 49 (212)
T PRK13974 2 KGKFIVLEGI----DGCGKTTQIDHLSKWLP-SSGLMPKGAKLIITREPGGTL 49 (212)
T ss_pred CCcEEEEECC----CCCCHHHHHHHHHHHHH-hcCccccCCeeeeeeCCCCCc
Confidence 3889999986 59999999999999994 4454 3677788987443
No 196
>PRK13975 thymidylate kinase; Provisional
Probab=64.75 E-value=5.4 Score=36.47 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=22.8
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|++|++.|+ -|.||||.+--|++.|+
T Consensus 2 ~~~I~ieG~----~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 2 NKFIVFEGI----DGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CeEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 578999985 69999999999999884
No 197
>PRK13946 shikimate kinase; Provisional
Probab=64.43 E-value=4.6 Score=37.43 Aligned_cols=26 Identities=42% Similarity=0.566 Sum_probs=22.4
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.+.|+|+|+ .|.||||++.-|++.|+
T Consensus 10 ~~~I~l~G~----~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGL----MGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECC----CCCCHHHHHHHHHHHcC
Confidence 468999998 49999999999998884
No 198
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.98 E-value=8.4 Score=40.37 Aligned_cols=32 Identities=19% Similarity=0.107 Sum_probs=27.0
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+.+.|-|||.+ ||||||-=|++.| ...|+++.
T Consensus 109 ~~~~I~ITGT~------GKTTTt~li~~iL-~~~g~~~~ 140 (445)
T PRK04308 109 GDKVIAITGSN------GKTTVTSLVGYLC-IKCGLDTV 140 (445)
T ss_pred CCCEEEEECCC------cHHHHHHHHHHHH-HHcCCCeE
Confidence 46899999986 9999999999999 47788753
No 199
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=63.53 E-value=5.7 Score=35.11 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=29.9
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecC-CCCCCccccccC
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ-PSQGPTFGIKGG 123 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~lRe-PSlGP~FGiKGG 123 (507)
.-|.||||++.-|++.| .+.|++..+.=-. ||+-.-|+.+.+
T Consensus 7 kgG~GKTt~a~~la~~l-~~~g~~V~~id~D~~~~~~~~~~~~~ 49 (116)
T cd02034 7 KGGVGKTTIAALLARYL-AEKGKPVLAIDADPDDLPERLSVEVG 49 (116)
T ss_pred CCCCCHHHHHHHHHHHH-HHCCCcEEEEECCchhhHHHHhhccC
Confidence 57999999999999999 5778876544333 455555555543
No 200
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=63.35 E-value=2.4 Score=42.49 Aligned_cols=112 Identities=19% Similarity=0.286 Sum_probs=66.9
Q ss_pred HHHHHHh-cCCCCeEEeecccccccccccccccccccCCCCcceE---EEEeeehHHHhcCCCCCccCCCCCchhccc--
Q 010555 353 DKIALKL-VGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCA---VIVATIRALKMHGGGPQVVAGKPLDHAYLN-- 426 (507)
Q Consensus 353 tk~ALkl-ag~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~Pdav---VlVaTvRALK~HGG~~~~~~g~pL~~~~~~-- 426 (507)
.++.-|+ +|. ||+||-..|..+. .++|++ +||..|+.--.+ -.+.+.+.+.+.-.. .|-.+|+++.+
T Consensus 163 ~~l~~Ki~aGA-~f~iTQ~~fd~~~-~~~~~~-~~~~~g~~~pIi~GI~p~~s~~~~~~~~~~----~Gv~iP~~~~~~l 235 (287)
T PF02219_consen 163 KRLKKKIDAGA-DFIITQPFFDAEA-FERFLD-RLREAGIDVPIIPGIMPLTSAKSARFLAKL----CGVDIPDELIERL 235 (287)
T ss_dssp HHHHHHHHTTE-SEEEEEE-SSHHH-HHHHHH-HHHHTTHTSEEEEEEE-HCCHHHHHHHHHH----HT-EEEHHHHHHH
T ss_pred HHHHHHHHCCC-CEEeccccCCHHH-HHHHHH-HHHHcCCCCcEEEEEeccCCHHHHHHHHhc----cCccCCHHHHHHH
Confidence 3444455 222 8999999999987 888988 899999832222 123444555544221 23345565443
Q ss_pred ----cCHHHH-HHHhhhHHHHHHHHhccCCcEE--EEecCCCCCCHHHHHHHHHHHHHcC
Q 010555 427 ----ENVALV-EAGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAG 479 (507)
Q Consensus 427 ----enl~al-~~G~~NL~~HIen~~~fGvpvV--VAiN~F~tDT~aEi~~v~~~~~~~G 479 (507)
.+.++. +.|++-....++.+...|++=| ..+|++ +.+.+.++++|
T Consensus 236 ~~~~~~~~~~~~~gi~~a~e~~~~l~~~gv~GvH~~t~n~~--------~~~~~il~~lg 287 (287)
T PF02219_consen 236 EEAKDDPEAVREIGIEIAVELIRELLAEGVPGVHLYTMNRE--------ELVPEILENLG 287 (287)
T ss_dssp HTTTT-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETTTS--------HHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHhHHHHHHHHHHHHHcCCCeEEEEcCCCH--------HHHHHHHHHcC
Confidence 334443 5688888888888887775532 467776 45666666655
No 201
>PRK06547 hypothetical protein; Provisional
Probab=63.30 E-value=5.3 Score=37.50 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.5
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
-.+|+|+| |.|.||||++--|++.+
T Consensus 15 ~~~i~i~G----~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 15 MITVLIDG----RSGSGKTTLAGALAART 39 (172)
T ss_pred CEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 45788887 67999999998888775
No 202
>PRK14527 adenylate kinase; Provisional
Probab=63.21 E-value=6.3 Score=36.51 Aligned_cols=28 Identities=39% Similarity=0.563 Sum_probs=23.8
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.+++|+|.| |-|.||||.+.-|++-++
T Consensus 4 ~~~~~i~i~G----~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLG----PPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHhC
Confidence 4689999998 579999999999988774
No 203
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=62.96 E-value=1.1e+02 Score=27.06 Aligned_cols=117 Identities=17% Similarity=0.162 Sum_probs=59.7
Q ss_pred chHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhcccc
Q 010555 348 SSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNE 427 (507)
Q Consensus 348 nSviAtk~ALklag~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~e 427 (507)
...+...++.+..+ .++-|.-.|++-+.=.+---.++......+||.|+|-. |......+.+ ...
T Consensus 18 ~~~~~~~l~~~~~~-~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~d~v~l~~---------G~ND~~~~~~-----~~~ 82 (191)
T cd01834 18 VGYVETYLAARYPE-LKLTFRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMF---------GINDSFRGFD-----DPV 82 (191)
T ss_pred HHHHHHHHHHhCCC-CCcEEEEcccCccchhhhhhhhhcccccCCCCEEEEEe---------ecchHhhccc-----ccc
Confidence 45566666665421 25677777777654332111334444556799887744 2222111100 123
Q ss_pred CHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCC-----------HHH----HHHHHHHHHHcCCC
Q 010555 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDS-----------KAE----LNAVRNAAMAAGAF 481 (507)
Q Consensus 428 nl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT-----------~aE----i~~v~~~~~~~G~~ 481 (507)
+++.++..+..+.+.+.. +.-+.++|+ ++-++.+. .+. .+.++++|++.++.
T Consensus 83 ~~~~~~~~l~~~v~~~~~-~~~~~~ii~-~~p~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~ 149 (191)
T cd01834 83 GLEKFKTNLRRLIDRLKN-KESAPRIVL-VSPIAYEANEDPLPDGAEYNANLAAYADAVRELAAENGVA 149 (191)
T ss_pred cHHHHHHHHHHHHHHHHc-ccCCCcEEE-ECCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 556666666666544431 234555554 56544322 122 24567788888875
No 204
>PRK06761 hypothetical protein; Provisional
Probab=62.92 E-value=7.6 Score=39.85 Aligned_cols=40 Identities=25% Similarity=0.212 Sum_probs=30.8
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSl 114 (507)
+++|+|+|. .|.||||++--|.+-|. ..|.++.. .++|..
T Consensus 3 ~~lIvI~G~----~GsGKTTla~~L~~~L~-~~g~~v~~-~~~~~~ 42 (282)
T PRK06761 3 TKLIIIEGL----PGFGKSTTAKMLNDILS-QNGIEVEL-YLEGNL 42 (282)
T ss_pred CcEEEEECC----CCCCHHHHHHHHHHhcC-cCceEEEE-EecCCC
Confidence 579999996 49999999999999994 66766544 555443
No 205
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=62.76 E-value=50 Score=33.11 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=25.6
Q ss_pred hccCCcEEEEecCCCCCCHHHHHHHHHHHHHcC-CCeEE
Q 010555 447 KAYGANVVVAVNMFATDSKAELNAVRNAAMAAG-AFDAV 484 (507)
Q Consensus 447 ~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G-~~~~~ 484 (507)
+++++|++|-|+-+ +.+++....+.++++| +. ++
T Consensus 88 ~~~~~p~i~si~g~---~~~~~~~~a~~~~~aG~~D-~i 122 (301)
T PRK07259 88 EEFDTPIIANVAGS---TEEEYAEVAEKLSKAPNVD-AI 122 (301)
T ss_pred hccCCcEEEEeccC---CHHHHHHHHHHHhccCCcC-EE
Confidence 45789999888754 4778888888888898 75 44
No 206
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=62.52 E-value=16 Score=36.44 Aligned_cols=60 Identities=22% Similarity=0.204 Sum_probs=46.2
Q ss_pred hHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHH
Q 010555 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPV 501 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~ 501 (507)
....|++..-+.|+|+|+.-=- =|++|.+.+.+.|++.|+. +.++-.|+-|=.=...|++
T Consensus 80 ~~~~~~~~al~~g~~vVigttg---~~~e~~~~l~~aA~~~g~~-v~~a~NfSlGv~ll~~~~~ 139 (266)
T TIGR00036 80 GVLNHLKFALEHGVRLVVGTTG---FSEEDKQELADLAEKAGIA-AVIAPNFSIGVNLMFKLLE 139 (266)
T ss_pred HHHHHHHHHHHCCCCEEEECCC---CCHHHHHHHHHHHhcCCcc-EEEECcccHHHHHHHHHHH
Confidence 4456777888899999996533 3789999999999999997 8888899887544444443
No 207
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.12 E-value=8.8 Score=40.35 Aligned_cols=31 Identities=26% Similarity=0.103 Sum_probs=27.3
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
.|.|-|||.+ ||||||-=|++.| ...|+++.
T Consensus 108 ~~~I~VTGTn------GKTTTt~ll~~iL-~~~g~~~~ 138 (438)
T PRK04663 108 KPVIAITGSN------GKSTVTDLTGVMA-KAAGVKVA 138 (438)
T ss_pred CCEEEEeCCC------CHHHHHHHHHHHH-HHCCCCEE
Confidence 5799999986 9999999999999 58898854
No 208
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.38 E-value=9.5 Score=40.81 Aligned_cols=32 Identities=28% Similarity=0.190 Sum_probs=27.9
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
.+.|-|||.+ ||||||-=|++.| ...|+++..
T Consensus 121 ~~~I~VTGTn------GKTTTt~ml~~iL-~~~g~~~~~ 152 (498)
T PRK02006 121 PKVLAITGTN------GKTTTTALTGLLC-ERAGKKVAV 152 (498)
T ss_pred CCEEEEECCC------cHHHHHHHHHHHH-HHcCCCEEE
Confidence 3799999986 9999999999999 588988764
No 209
>PRK04040 adenylate kinase; Provisional
Probab=61.28 E-value=6.7 Score=37.20 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=21.8
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.++|+|||+ .|.||||++--|.+.|
T Consensus 2 ~~~i~v~G~----pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGV----PGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeC----CCCCHHHHHHHHHHHh
Confidence 368999996 4999999999998888
No 210
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=61.22 E-value=7.8 Score=40.07 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=22.7
Q ss_pred EEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 72 VVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
|.||| +.|.||||++-.|.+.|. +.|.+
T Consensus 2 IgItG----~SGSGKTTv~~~l~~~l~-~~g~~ 29 (277)
T cd02029 2 IAVTG----SSGAGTTTVKRAFEHIFA-REGIH 29 (277)
T ss_pred EEEEC----CCCCCHHHHHHHHHHHHH-hcCCc
Confidence 56666 579999999999999994 66754
No 211
>PRK07667 uridine kinase; Provisional
Probab=61.15 E-value=6.7 Score=36.83 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=23.1
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCC
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk 103 (507)
..+|.++| +-|.||||++--|.+.|+ ..|.
T Consensus 17 ~~iIgI~G----~~gsGKStla~~L~~~l~-~~~~ 46 (193)
T PRK07667 17 RFILGIDG----LSRSGKTTFVANLKENMK-QEGI 46 (193)
T ss_pred CEEEEEEC----CCCCCHHHHHHHHHHHHH-hCCC
Confidence 35667776 469999999999999994 4444
No 212
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=61.03 E-value=30 Score=33.01 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=34.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchh
Q 010555 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 450 GvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeG 495 (507)
|+|+.|.+..=.- +++||....+.|.++|+..+-.++.|..+|.-
T Consensus 116 g~~lkvI~e~~~l-~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at 160 (203)
T cd00959 116 GAPLKVILETGLL-TDEEIIKACEIAIEAGADFIKTSTGFGPGGAT 160 (203)
T ss_pred CCeEEEEEecCCC-CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCC
Confidence 8898887665333 58899999999999999755556779766643
No 213
>PRK03839 putative kinase; Provisional
Probab=60.94 E-value=6.5 Score=35.82 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=19.3
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.|+++|+ -|.||||++.-|++.++
T Consensus 2 ~I~l~G~----pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGT----PGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECC----CCCCHHHHHHHHHHHhC
Confidence 4777775 39999999988888873
No 214
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=60.74 E-value=13 Score=35.11 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=28.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcE-EEEecC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV-VTCLRQ 111 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a-~~~lRe 111 (507)
|.|.+++|+| |.|.|||+.+..++-.. .+.|+++ .+++.+
T Consensus 14 ~~g~~~li~G----~~G~GKt~~~~~~~~~~-~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 14 PEGHVIVVIG----EYGTGKTTFSLQFLYQG-LKNGEKAMYISLEE 54 (224)
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHH-HhCCCeEEEEECCC
Confidence 6799999999 57999999988886543 1336554 444544
No 215
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=60.57 E-value=12 Score=39.58 Aligned_cols=38 Identities=37% Similarity=0.433 Sum_probs=30.8
Q ss_pred ccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010555 76 GITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 76 aitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlG 115 (507)
+||=+| |.||||+.=.|.+-| .+-|++..+--=.||--
T Consensus 55 GITG~P-GaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 55 GITGVP-GAGKSTLIEALGREL-RERGHRVAVLAVDPSSP 92 (323)
T ss_pred EecCCC-CCchHHHHHHHHHHH-HHCCcEEEEEEECCCCC
Confidence 555555 999999999999999 58899877776677754
No 216
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=60.54 E-value=9.5 Score=38.74 Aligned_cols=28 Identities=36% Similarity=0.390 Sum_probs=23.4
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..++.|+++|+ -|.||||++.-|++.|+
T Consensus 131 ~~~~~I~l~G~----~GsGKStvg~~La~~Lg 158 (309)
T PRK08154 131 ARRRRIALIGL----RGAGKSTLGRMLAARLG 158 (309)
T ss_pred cCCCEEEEECC----CCCCHHHHHHHHHHHcC
Confidence 35889999997 59999999988887773
No 217
>PLN03025 replication factor C subunit; Provisional
Probab=60.31 E-value=7.7 Score=39.15 Aligned_cols=196 Identities=15% Similarity=0.199 Sum_probs=88.3
Q ss_pred EEEeccCCCCCCCCcchhHhhHHHHHhhhcCC-cEEEEecCCCC-CC-cc-c-ccc-----CCCCCCceeeecCcccccc
Q 010555 72 VVVGGITPTPLGEGKSTTTVGLCQALGAFLDK-KVVTCLRQPSQ-GP-TF-G-IKG-----GAAGGGYSQVIPMDEFNLH 141 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~~~lgk-~a~~~lRePSl-GP-~F-G-iKG-----GAaGGGysQViPmediNLH 141 (507)
+|++| |.|.||||++..++..|. .-+. ..+..+...+. |. ++ . +|- -....|...|+=+||+
T Consensus 37 lll~G----p~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~--- 108 (319)
T PLN03025 37 LILSG----PPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEA--- 108 (319)
T ss_pred EEEEC----CCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEech---
Confidence 45565 889999999999999983 1121 22333322211 10 00 0 000 0000122345555555
Q ss_pred cchhhhHHH-HHHhHHHHHHHhhhhccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhh
Q 010555 142 LTGDIHAIT-AANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFA 220 (507)
Q Consensus 142 fTGD~HAIt-aA~NLlaA~iDn~i~~~n~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~ 220 (507)
|.++ +|.|.|-..++. +..++ |++=.... ..++.+...+|...+-+++-+.+++...-.+.+.
T Consensus 109 -----d~lt~~aq~aL~~~lE~--~~~~t--------~~il~~n~-~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~ 172 (319)
T PLN03025 109 -----DSMTSGAQQALRRTMEI--YSNTT--------RFALACNT-SSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVE 172 (319)
T ss_pred -----hhcCHHHHHHHHHHHhc--ccCCc--------eEEEEeCC-ccccchhHHHhhhcccCCCCCHHHHHHHHHHHHH
Confidence 4444 356666555553 22221 11100111 1123334455655444443333333322233333
Q ss_pred cCCCCCCceeeeeccccccccccceeeccCCC---CCCcceecce---eeeehhhHHHHH--HhcCCHHHHHHHhcCcE
Q 010555 221 RLDIDPASITWRRVMDVNDRFLRKITIGQGPE---EKGMVRETGF---DISVASEIMAVL--ALTTSLADMRERLGKMV 291 (507)
Q Consensus 221 ~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~---~~G~~re~gF---dITvASEiMAIL--~La~dl~DLr~Rlg~iv 291 (507)
.-++....-.....+...++.||.++--+-.. ..-++.++=+ +......+.+++ +..+|+++-++.+-+++
T Consensus 173 ~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~~~~~~a~~~l~~ll 251 (319)
T PLN03025 173 AEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLKGKFDDACDGLKQLY 251 (319)
T ss_pred HcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33443333445667777888888665222100 0012222111 223334455554 46677888888887775
No 218
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=60.30 E-value=64 Score=31.20 Aligned_cols=59 Identities=10% Similarity=0.013 Sum_probs=43.6
Q ss_pred CHHHHHHHhhhHHHHHHHHhccCCcEEEE---ecCCCCCCHHH--------HHHHHHHHHHcCCCeEEEccc
Q 010555 428 NVALVEAGCVNLARHIANTKAYGANVVVA---VNMFATDSKAE--------LNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 428 nl~al~~G~~NL~~HIen~~~fGvpvVVA---iN~F~tDT~aE--------i~~v~~~~~~~G~~~~~~s~~ 488 (507)
+-+..++.+.-+.++|+-.+.+|.+.||. .+.+.. +.+| ++.+.++|++.|+. .++-++
T Consensus 81 ~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~-l~iE~~ 150 (275)
T PRK09856 81 DEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLT-PPNVIWGRLAENLSELCEYAENIGMD-LILEPL 150 (275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHcCCE-EEEecC
Confidence 33566778889999999999999999876 222322 3444 67888889999996 666665
No 219
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=60.17 E-value=38 Score=32.23 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=33.7
Q ss_pred hHHHHHHHHhccCCcEEEEecCCC--CCCHHHHHHHHHHHHHcCC
Q 010555 438 NLARHIANTKAYGANVVVAVNMFA--TDSKAELNAVRNAAMAAGA 480 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN~F~--tDT~aEi~~v~~~~~~~G~ 480 (507)
...+-|+.++++|+++.|....++ .|+++|++.+.+++.+.|.
T Consensus 144 ~v~~~i~~l~~~g~~~~v~~vv~~~~~~n~~ei~~l~~~~~~l~~ 188 (235)
T TIGR02493 144 PTLDFAKYLAKRNKPIWIRYVLVPGYTDSEEDIEALAEFVKTLPN 188 (235)
T ss_pred HHHHHHHHHHhCCCcEEEEEeeeCCcCCCHHHHHHHHHHHHhCCC
Confidence 344556667788999877666565 6889999999999999994
No 220
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=60.12 E-value=8.5 Score=34.07 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=20.3
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhh
Q 010555 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF 100 (507)
Q Consensus 66 ~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~ 100 (507)
...+++|+|+| |.|.||||+..-+.+.+..+
T Consensus 21 ~~~~~~~ll~G----~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 21 SGSPRNLLLTG----ESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp S-----EEE-B-----TTSSHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEC----CCCCCHHHHHHHHHHHHHhc
Confidence 35689999999 68999999999888888533
No 221
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.08 E-value=10 Score=40.71 Aligned_cols=79 Identities=24% Similarity=0.294 Sum_probs=51.1
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC-CccccccCCCCCCceeeecCcccccccchhhh
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG-PTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIH 147 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlG-P~FGiKGGAaGGGysQViPmediNLHfTGD~H 147 (507)
.++|-|||.+ ||||||-=|++-| ...|+++.++= .+| |...... +..|. |+=+.++.|+++--||
T Consensus 104 ~~~IaVTGTn------GKTTTt~ll~~iL-~~~g~~~~~~G---niG~p~l~~~~---~~~~~-VlE~ss~ql~~~~~~~ 169 (454)
T PRK01368 104 LKFIAITGTN------GKSTTTALISHIL-NSNGLDYPVAG---NIGVPALQAKA---SKDGY-VLELSSFQLDLVKTFT 169 (454)
T ss_pred CCEEEEECCC------cHHHHHHHHHHHH-HhcCCCeEEEc---cCCHHHhcccC---CCCEE-EEEcCchhhccccccC
Confidence 4789999986 9999999999999 58899876541 122 2222222 23454 8889999998876454
Q ss_pred H-HHHHHhHHHHHHH
Q 010555 148 A-ITAANNLLAAAID 161 (507)
Q Consensus 148 A-ItaA~NLlaA~iD 161 (507)
. |..=-|+=..=+|
T Consensus 170 P~iavitNI~~DHLd 184 (454)
T PRK01368 170 AKIAVLLNITPDHLD 184 (454)
T ss_pred CCEEEEecCChhHhh
Confidence 2 2223455444444
No 222
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=59.75 E-value=57 Score=31.56 Aligned_cols=76 Identities=14% Similarity=0.043 Sum_probs=50.0
Q ss_pred cCHHHHHHHhhhHHHHHHHHhccCCcEEEEecC--C-CCCCH-------HHHHHHHHHHHHcCCCeEEEcccc---ccCc
Q 010555 427 ENVALVEAGCVNLARHIANTKAYGANVVVAVNM--F-ATDSK-------AELNAVRNAAMAAGAFDAVVCSHH---AHGG 493 (507)
Q Consensus 427 enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~--F-~tDT~-------aEi~~v~~~~~~~G~~~~~~s~~w---a~GG 493 (507)
++.+.-++.+.++++.|+..+.+|.++|+.--. | ..+++ +.++.+.+.+++.|+. .++-+|. -.--
T Consensus 84 ~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~~~~~~~~~~ 162 (284)
T PRK13210 84 RDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVM-LAVEIMDTPFMNSI 162 (284)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCE-EEEEecCccccCCH
Confidence 455677888999999999999999999985211 1 12332 2367778888899996 6665552 1222
Q ss_pred hhhHHHHHhh
Q 010555 494 KGAFKEPVRM 503 (507)
Q Consensus 494 eGa~~LA~~v 503 (507)
+-+..|.+.|
T Consensus 163 ~~~~~l~~~v 172 (284)
T PRK13210 163 SKWKKWDKEI 172 (284)
T ss_pred HHHHHHHHHc
Confidence 3345555544
No 223
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=59.49 E-value=11 Score=39.33 Aligned_cols=33 Identities=30% Similarity=0.202 Sum_probs=28.0
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
+.+.|-|||.+ ||||||-=|++.| ...|+++++
T Consensus 101 ~~~~I~VTGT~------GKTTTt~li~~iL-~~~g~~~~~ 133 (433)
T TIGR01087 101 PLPVVAITGTN------GKTTTTSLLYHLL-KAAGLKAFL 133 (433)
T ss_pred CCCEEEEECCC------CHHHHHHHHHHHH-HhcCCCeEE
Confidence 35799999986 9999999999999 588988654
No 224
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=59.40 E-value=12 Score=42.03 Aligned_cols=47 Identities=32% Similarity=0.533 Sum_probs=34.2
Q ss_pred hhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 58 SVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 58 ~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
.+.+||.++..| |||.+ |-|.||||.+.+|+.=+ +..|| .+=++-.|
T Consensus 254 kl~eRL~eraeG--ILIAG----~PGaGKsTFaqAlAefy-~~~Gk-iVKTmEsP 300 (604)
T COG1855 254 KLKERLEERAEG--ILIAG----APGAGKSTFAQALAEFY-ASQGK-IVKTMESP 300 (604)
T ss_pred HHHHHHHhhhcc--eEEec----CCCCChhHHHHHHHHHH-HhcCc-EEeeccCc
Confidence 456677665555 77776 67999999999999999 58888 34444433
No 225
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=59.14 E-value=4.7 Score=36.07 Aligned_cols=35 Identities=31% Similarity=0.402 Sum_probs=24.4
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlG 115 (507)
|.|.||||++.-|.+-+..+++.-.-.+-|+|..|
T Consensus 7 psGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~ 41 (137)
T cd00071 7 PSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPG 41 (137)
T ss_pred CCCCCHHHHHHHHHhcCCccceecccccccCCCCC
Confidence 67999999888887765334444444567888755
No 226
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=58.92 E-value=19 Score=32.73 Aligned_cols=48 Identities=23% Similarity=0.158 Sum_probs=35.2
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccC
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGG 123 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKGG 123 (507)
.|.|.| |.+.||||+.--|..-| ...|.+..+...-.--.+.|..-|-
T Consensus 2 vv~VvG----~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~g~~~~d~pG~ 49 (140)
T PF03205_consen 2 VVQVVG----PKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDHGQFEIDPPGT 49 (140)
T ss_dssp EEEEEE----STTSSHHHHHHHHHHHH-HHTT--EEEEEE-STTSTTCSTTCH
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHH-hHcCCceEEEEEccCCCcccCCCCc
Confidence 567777 46999999999999999 4789998877776555556666665
No 227
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=58.77 E-value=33 Score=30.30 Aligned_cols=59 Identities=10% Similarity=0.005 Sum_probs=35.8
Q ss_pred hccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 447 KAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 447 ~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
...++|+|+++|+..-....+-+...++++..|....-+...=++=|+|-.+|-+.+..
T Consensus 116 ~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (179)
T cd01890 116 LENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVE 174 (179)
T ss_pred HHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHh
Confidence 34689999999998753222223345666666663111223335668888888776653
No 228
>PRK12289 GTPase RsgA; Reviewed
Probab=58.57 E-value=35 Score=35.99 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=43.5
Q ss_pred HHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 439 L~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
|.+.+..+...|+|+|+++|+-.-.++++++...+..+..|.. ++..+ +.-|+|-.+|.+.+.
T Consensus 109 LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~-v~~iS--A~tg~GI~eL~~~L~ 171 (352)
T PRK12289 109 LSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQ-PLFIS--VETGIGLEALLEQLR 171 (352)
T ss_pred HHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCe-EEEEE--cCCCCCHHHHhhhhc
Confidence 3455555567899999999998876777776666666778885 44333 445677777776653
No 229
>PLN02165 adenylate isopentenyltransferase
Probab=58.53 E-value=7.4 Score=41.07 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=24.6
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 66 ~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++.|++|++.| |-|.||||+++-|++.++
T Consensus 40 ~~~g~iivIiG----PTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 40 NCKDKVVVIMG----ATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCCEEEEEC----CCCCcHHHHHHHHHHHcC
Confidence 46799999988 449999999999999884
No 230
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=58.52 E-value=30 Score=37.75 Aligned_cols=95 Identities=14% Similarity=0.094 Sum_probs=55.9
Q ss_pred ccccccccccccCCCC-cceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCc-EE
Q 010555 377 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VV 454 (507)
Q Consensus 377 GaEKF~dIKCr~sgl~-PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvp-vV 454 (507)
|-|+|. |+-.+|+. .|+++||....- |+.. ....+|+..++.+|++ +|
T Consensus 126 GH~~fi--~~m~~g~~~~D~alLVVda~~----g~~~------------------------~qT~ehl~i~~~lgi~~iI 175 (460)
T PTZ00327 126 GHDILM--ATMLNGAAVMDAALLLIAANE----SCPQ------------------------PQTSEHLAAVEIMKLKHII 175 (460)
T ss_pred CHHHHH--HHHHHHHhhCCEEEEEEECCC----Cccc------------------------hhhHHHHHHHHHcCCCcEE
Confidence 446663 66666665 799998887541 1110 1235788888899996 68
Q ss_pred EEecCCCCCCHHHHHHH----HHHHHH---cCCCeEEEccccccCchhhHHHHHhhh
Q 010555 455 VAVNMFATDSKAELNAV----RNAAMA---AGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 455 VAiN~F~tDT~aEi~~v----~~~~~~---~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
|+||+-.--++++++.+ +++.+. .+++ ++..+ +.=|+|-.+|-+.+.
T Consensus 176 VvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~-iipVS--A~~G~nI~~Ll~~L~ 229 (460)
T PTZ00327 176 ILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAP-IIPIS--AQLKYNIDVVLEYIC 229 (460)
T ss_pred EEEecccccCHHHHHHHHHHHHHHHHhhccCCCe-EEEee--CCCCCCHHHHHHHHH
Confidence 89999765445554443 333322 2343 33323 334567667666554
No 231
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=57.88 E-value=40 Score=29.14 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=33.9
Q ss_pred ccCCcEEEEecCCCCCCHHHHHHHHHHHHHc--CCC--eEEEccccccCchhhHHHHHhhhh
Q 010555 448 AYGANVVVAVNMFATDSKAELNAVRNAAMAA--GAF--DAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 448 ~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~--G~~--~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
..+.|++++.|+.......+.+.+.+.++.. +-. .+..++.+ =|+|-.++=+.++.
T Consensus 98 ~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~gv~~~~~~l~~ 157 (158)
T cd00878 98 LKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAV--TGDGLDEGLDWLLQ 157 (158)
T ss_pred cCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCC--CCCCHHHHHHHHhh
Confidence 5799999999998776555455555554422 111 24444444 46777777665543
No 232
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=57.72 E-value=39 Score=31.53 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=43.9
Q ss_pred HHHHHHhccCCcEEEEecCCCCCCHHH-------------HHHHHHHHHH----cCC--CeEEEccccccCchhhHHHHH
Q 010555 441 RHIANTKAYGANVVVAVNMFATDSKAE-------------LNAVRNAAMA----AGA--FDAVVCSHHAHGGKGAFKEPV 501 (507)
Q Consensus 441 ~HIen~~~fGvpvVVAiN~F~tDT~aE-------------i~~v~~~~~~----~G~--~~~~~s~~wa~GGeGa~~LA~ 501 (507)
+.++.++++|.|+++++|+-..+.+.| ++.+++.|.+ .|+ +.+.+...+..||-+-..|-+
T Consensus 98 ~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~ 177 (197)
T cd04104 98 KLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRE 177 (197)
T ss_pred HHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHH
Confidence 445666778999999999988765322 6667777763 232 235555566567778888877
Q ss_pred hhhh
Q 010555 502 RMLH 505 (507)
Q Consensus 502 ~v~~ 505 (507)
.+++
T Consensus 178 ~~~~ 181 (197)
T cd04104 178 TLLK 181 (197)
T ss_pred HHHH
Confidence 7764
No 233
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=57.61 E-value=13 Score=36.85 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=27.4
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcE-EEEe
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV-VTCL 109 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a-~~~l 109 (507)
|.|..++|+| |.|.||||.+.=++-.. .+.|.++ ++.+
T Consensus 34 p~gs~~lI~G----~pGtGKT~l~~qf~~~~-a~~Ge~vlyis~ 72 (259)
T TIGR03878 34 PAYSVINITG----VSDTGKSLMVEQFAVTQ-ASRGNPVLFVTV 72 (259)
T ss_pred ECCcEEEEEc----CCCCCHHHHHHHHHHHH-HhCCCcEEEEEe
Confidence 5799999999 57999999998765544 2346554 3444
No 234
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=57.55 E-value=31 Score=31.60 Aligned_cols=54 Identities=9% Similarity=-0.090 Sum_probs=34.4
Q ss_pred ccCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 448 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 448 ~fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
..++|++|+.|+..-..+.+ .+..++++++.+.. ++.+.. .=|+|-.+|-+.+.
T Consensus 104 ~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~Sa--~~~~~v~~l~~~l~ 159 (191)
T cd04112 104 QEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVP-FMETSA--KTGLNVELAFTAVA 159 (191)
T ss_pred CCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCe-EEEEeC--CCCCCHHHHHHHHH
Confidence 34799999999987543222 23456667777875 555443 44577777666554
No 235
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=57.34 E-value=69 Score=28.63 Aligned_cols=65 Identities=20% Similarity=0.133 Sum_probs=47.1
Q ss_pred cCHHHHHHHhhhHHHHHHHHhccCCcEEEEe----cCCCCCCHH--------HHHHHHHHHHHcCCCeEEEccccccCc
Q 010555 427 ENVALVEAGCVNLARHIANTKAYGANVVVAV----NMFATDSKA--------ELNAVRNAAMAAGAFDAVVCSHHAHGG 493 (507)
Q Consensus 427 enl~al~~G~~NL~~HIen~~~fGvpvVVAi----N~F~tDT~a--------Ei~~v~~~~~~~G~~~~~~s~~wa~GG 493 (507)
++-+ -++.+..+.+.|+-++.+|++.|+.- +....++.+ -++.+.+.|++.|+. +.+-++.....
T Consensus 62 ~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-i~lE~~~~~~~ 138 (213)
T PF01261_consen 62 ANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVR-IALENHPGPFS 138 (213)
T ss_dssp SSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSE-EEEE-SSSSSS
T ss_pred cchh-hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcce-EEEecccCccc
Confidence 3434 78888999999999999999998877 345555544 355666777788996 67766666655
No 236
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=57.33 E-value=7.4 Score=44.08 Aligned_cols=31 Identities=35% Similarity=0.468 Sum_probs=24.9
Q ss_pred cCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 64 EGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 64 ~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..+-.+++.|+|| |+|.|||||--=|+.-|+
T Consensus 105 ~~~l~~~iLLltG----PsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 105 TPKLGSRILLLTG----PSGCGKSTTVKVLSKELG 135 (634)
T ss_pred ccCCCceEEEEeC----CCCCCchhHHHHHHHhhC
Confidence 3345678999998 899999999887777663
No 237
>PRK15452 putative protease; Provisional
Probab=57.32 E-value=30 Score=37.70 Aligned_cols=98 Identities=23% Similarity=0.243 Sum_probs=60.9
Q ss_pred CcceEEEEeeehHHHh--cCCCCCccCCCCCchh-ccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHH
Q 010555 392 TPQCAVIVATIRALKM--HGGGPQVVAGKPLDHA-YLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAEL 468 (507)
Q Consensus 392 ~PdavVlVaTvRALK~--HGG~~~~~~g~pL~~~-~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi 468 (507)
+|...|-|-+.-+||. +.|+..+-.|-+--.. ....|.. .+.|++.++-+++.|+.+.|++|.++. ++|+
T Consensus 3 ~peLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~-----~edl~eav~~ah~~g~kvyvt~n~i~~--e~el 75 (443)
T PRK15452 3 KPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFN-----HENLALGINEAHALGKKFYVVVNIAPH--NAKL 75 (443)
T ss_pred ccEEEEECCCHHHHHHHHHCCCCEEEECCCccchhhhccCCC-----HHHHHHHHHHHHHcCCEEEEEecCcCC--HHHH
Confidence 3677777777777764 3566666655321000 0001111 134777888899999999999999988 4666
Q ss_pred HHHHHHHH---HcCCCeEEEccccccCchhhHHHHHh
Q 010555 469 NAVRNAAM---AAGAFDAVVCSHHAHGGKGAFKEPVR 502 (507)
Q Consensus 469 ~~v~~~~~---~~G~~~~~~s~~wa~GGeGa~~LA~~ 502 (507)
+.+.++.+ +.|+. .++...+ |.+.++++
T Consensus 76 ~~~~~~l~~l~~~gvD-gvIV~d~-----G~l~~~ke 106 (443)
T PRK15452 76 KTFIRDLEPVIAMKPD-ALIMSDP-----GLIMMVRE 106 (443)
T ss_pred HHHHHHHHHHHhCCCC-EEEEcCH-----HHHHHHHH
Confidence 66665544 78886 4554443 55666665
No 238
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=57.31 E-value=20 Score=36.61 Aligned_cols=55 Identities=24% Similarity=0.215 Sum_probs=41.3
Q ss_pred HhhhHHHHHHHHhccCC-cEEEEecCCCCCCHHHHHHHHHHHHHcC-CCeEEEccccccCchh
Q 010555 435 GCVNLARHIANTKAYGA-NVVVAVNMFATDSKAELNAVRNAAMAAG-AFDAVVCSHHAHGGKG 495 (507)
Q Consensus 435 G~~NL~~HIen~~~fGv-pvVVAiN~F~tDT~aEi~~v~~~~~~~G-~~~~~~s~~wa~GGeG 495 (507)
|..=|.+||+++.+-|+ .+||+.|-|..| ++.++..+.. ...++.+..+.+|.-|
T Consensus 30 gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~------lve~~l~~~~~~~~iv~N~~y~ktN~~ 86 (239)
T COG1213 30 GREIIYRTIENLAKAGITEFVVVTNGYRAD------LVEEFLKKYPFNAKIVINSDYEKTNTG 86 (239)
T ss_pred CeEeHHHHHHHHHHcCCceEEEEeccchHH------HHHHHHhcCCcceEEEeCCCcccCCce
Confidence 44468899999999998 577788899876 6666666555 3347788888888744
No 239
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.15 E-value=12 Score=39.59 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=28.2
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
+.+.|-|||.+ ||||||-=|++.| ...|+++..
T Consensus 121 ~~~~I~VTGTn------GKTTTt~mi~~iL-~~~g~~~~~ 153 (480)
T PRK01438 121 PAPWLAVTGTN------GKTTTVQMLASML-RAAGLRAAA 153 (480)
T ss_pred CCCEEEEeCCC------cHHHHHHHHHHHH-HHcCCCeEE
Confidence 56799999986 9999999999999 578888654
No 240
>PRK05439 pantothenate kinase; Provisional
Probab=57.09 E-value=8.8 Score=39.92 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=30.2
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCccccc
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNL 140 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNL 140 (507)
+|.||| |-|.||||++--|.+.|+ +.. +|-..+|++||+|-+
T Consensus 88 iIgIaG----~~gsGKSTla~~L~~~l~-~~~-----------------------~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 88 IIGIAG----SVAVGKSTTARLLQALLS-RWP-----------------------EHPKVELVTTDGFLY 129 (311)
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHHH-hhC-----------------------CCCceEEEecccccc
Confidence 566666 569999999999988884 331 123468999999854
No 241
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=56.93 E-value=48 Score=30.41 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=35.9
Q ss_pred HHHHhccCCcEEEEecCCCCC---CHHHHHHHHHHHHH-------cCCCeEEEccc--------cccCchhhHHHHHhhh
Q 010555 443 IANTKAYGANVVVAVNMFATD---SKAELNAVRNAAMA-------AGAFDAVVCSH--------HAHGGKGAFKEPVRML 504 (507)
Q Consensus 443 Ien~~~fGvpvVVAiN~F~tD---T~aEi~~v~~~~~~-------~G~~~~~~s~~--------wa~GGeGa~~LA~~v~ 504 (507)
+..+...++|+++++|+-... .++.++.+++++.+ .+.. ++.+.. |.+=.++-.+|.+++.
T Consensus 110 ~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~ 188 (194)
T cd01891 110 LKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP-VLYASAKNGWASLNLEDPSEDLEPLFDTII 188 (194)
T ss_pred HHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC-EEEeehhccccccccccchhhHHHHHHHHH
Confidence 444455799999999997642 23446666776633 2554 333331 2233466667777654
No 242
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=56.91 E-value=44 Score=28.73 Aligned_cols=54 Identities=11% Similarity=-0.035 Sum_probs=33.5
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~--aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.++|++|+.|+..--.+ ...+...+++++.+.+ +..++ ++=|+|-.+|-+.+++
T Consensus 105 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l~~ 160 (163)
T cd04136 105 ENVPMVLVGNKCDLEDERVVSREEGQALARQWGCP-FYETS--AKSKINVDEVFADLVR 160 (163)
T ss_pred CCCCEEEEEECccccccceecHHHHHHHHHHcCCe-EEEec--CCCCCCHHHHHHHHHH
Confidence 58999999999754221 2233455667777764 44333 3346788777776654
No 243
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=56.78 E-value=41 Score=28.46 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=36.1
Q ss_pred HHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 443 IANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 443 Ien~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.+-++++++|+|+++|+......++. .+...+.+...++. .=++-|+|-.+|-+.+++
T Consensus 98 ~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~--~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 98 AKYLRKSKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIP--ISAEHGRGIGDLLDAILE 155 (157)
T ss_pred HHHHHhcCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEE--EecccCCCHHHHHHHHHh
Confidence 34455678999999999866554443 33344566633333 334556787777776654
No 244
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=56.77 E-value=6.9 Score=42.35 Aligned_cols=46 Identities=24% Similarity=0.556 Sum_probs=29.3
Q ss_pred cCceeeechhhhhh-hcCCC-CCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 49 GKYKAKVLLSVLDE-LEGSA-DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 49 G~~kAKi~l~~l~~-~~~~~-~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|..+|.=...++-+ .+..+ .||-||+++ |-|.|||.+++|++|.|+
T Consensus 28 GQ~~AReAagiiv~mIk~~K~aGr~iLiaG----ppGtGKTAlA~~ia~eLG 75 (398)
T PF06068_consen 28 GQEKAREAAGIIVDMIKEGKIAGRAILIAG----PPGTGKTALAMAIAKELG 75 (398)
T ss_dssp S-HHHHHHHHHHHHHHHTT--TT-EEEEEE-----TTSSHHHHHHHHHHHCT
T ss_pred ChHHHHHHHHHHHHHHhcccccCcEEEEeC----CCCCCchHHHHHHHHHhC
Confidence 45555444433322 23222 599999998 779999999999999985
No 245
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=56.77 E-value=10 Score=36.46 Aligned_cols=36 Identities=31% Similarity=0.358 Sum_probs=27.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.+|-+.+.|+ -|-||||.++||+-.. ...|+++.+.
T Consensus 4 ~~Gli~v~~g-----~GkGKtt~a~g~a~ra-~~~g~~v~iv 39 (173)
T TIGR00708 4 ERGIIIVHTG-----NGKGKTTAAFGMALRA-LGHGKKVGVI 39 (173)
T ss_pred cccEEEEECC-----CCCChHHHHHHHHHHH-HHCCCeEEEE
Confidence 3577777765 6999999999998777 4678876543
No 246
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=56.72 E-value=10 Score=35.90 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=21.0
Q ss_pred CCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 80 TPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
|+-|-||||.++|++-... ..|+++..
T Consensus 9 ~g~G~Gkt~~a~g~~~ra~-~~g~~v~~ 35 (159)
T cd00561 9 TGNGKGKTTAALGLALRAL-GHGYRVGV 35 (159)
T ss_pred CCCCCCHHHHHHHHHHHHH-HCCCeEEE
Confidence 3459999999999987773 56887654
No 247
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=56.37 E-value=7.2 Score=35.77 Aligned_cols=32 Identities=34% Similarity=0.522 Sum_probs=23.8
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
+|.|+|+ -|.||||.+--|.+-+ | +.+++||.
T Consensus 1 ~I~ieG~----~GsGKSTl~~~L~~~~----~---~~~~~Ep~ 32 (193)
T cd01673 1 VIVVEGN----IGAGKSTLAKELAEHL----G---YEVVPEPV 32 (193)
T ss_pred CEEEECC----CCCCHHHHHHHHHHHh----C---Cccccccc
Confidence 4667775 5999999998887765 3 34679986
No 248
>COG2229 Predicted GTPase [General function prediction only]
Probab=56.36 E-value=29 Score=34.34 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=22.6
Q ss_pred CcEEEEecCC---CCCCHHHHHHHHHHHHHcCCC
Q 010555 451 ANVVVAVNMF---ATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 451 vpvVVAiN~F---~tDT~aEi~~v~~~~~~~G~~ 481 (507)
+|+|||+|+| ...++++|..+.+.+. ...+
T Consensus 122 ip~vVa~NK~DL~~a~ppe~i~e~l~~~~-~~~~ 154 (187)
T COG2229 122 IPVVVAINKQDLFDALPPEKIREALKLEL-LSVP 154 (187)
T ss_pred CCEEEEeeccccCCCCCHHHHHHHHHhcc-CCCc
Confidence 9999999985 5666777777777664 4565
No 249
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=55.93 E-value=26 Score=30.62 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHhc---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 436 CVNLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 436 ~~NL~~HIen~~~---fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
+.++...++.+++ -++|+|++.|+..-..+. ..+..++++++.++. ++.++ ++-|+|-.++=+.+.
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~~~~~i~ 160 (166)
T cd01869 90 FNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIP-FLETS--AKNATNVEQAFMTMA 160 (166)
T ss_pred HHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEE--CCCCcCHHHHHHHHH
Confidence 4455555555554 368999999997643332 235667888888885 44333 334566666554443
No 250
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=55.88 E-value=12 Score=36.22 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=23.9
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
||+++|. -|.||||.+--|++.|. ..|.+.+
T Consensus 1 LIvl~G~----pGSGKST~a~~La~~l~-~~~~~v~ 31 (249)
T TIGR03574 1 LIILTGL----PGVGKSTFSKELAKKLS-EKNIDVI 31 (249)
T ss_pred CEEEEcC----CCCCHHHHHHHHHHHHH-HcCCceE
Confidence 4777775 59999999999999994 5555543
No 251
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=55.86 E-value=6 Score=32.94 Aligned_cols=18 Identities=50% Similarity=0.722 Sum_probs=16.0
Q ss_pred CCCCCcchhHhhHHHHHh
Q 010555 81 PLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~ 98 (507)
|.|.||||++--|++.++
T Consensus 6 ~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 6 PPGTGKTTLARALAQYLG 23 (132)
T ss_dssp STTSSHHHHHHHHHHHTT
T ss_pred cCCCCeeHHHHHHHhhcc
Confidence 789999999999988883
No 252
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=55.61 E-value=78 Score=30.98 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=48.4
Q ss_pred cCHHHHHHHhhhHHHHHHHHhccCCcEEEEecC---CCCCCHHH-------HHHHHHHHHHcCCCeEEEcc---ccccCc
Q 010555 427 ENVALVEAGCVNLARHIANTKAYGANVVVAVNM---FATDSKAE-------LNAVRNAAMAAGAFDAVVCS---HHAHGG 493 (507)
Q Consensus 427 enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~---F~tDT~aE-------i~~v~~~~~~~G~~~~~~s~---~wa~GG 493 (507)
.|.+.-++.+..++++|+-++.+|.|+|+.-.. +..++++. +..+.++|++.|+. ..+-+ .|..-.
T Consensus 84 ~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~-l~lE~~~~~~~~t~ 162 (279)
T TIGR00542 84 KDKAVRQQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVT-LAVEIMDTPFMSSI 162 (279)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeCCCchhcCH
Confidence 455667889999999999999999998864221 12233422 34455677788996 55544 344444
Q ss_pred hhhHHHHHhh
Q 010555 494 KGAFKEPVRM 503 (507)
Q Consensus 494 eGa~~LA~~v 503 (507)
..+.+|.+.+
T Consensus 163 ~~~~~li~~v 172 (279)
T TIGR00542 163 SKWLKWDHYL 172 (279)
T ss_pred HHHHHHHHHc
Confidence 4455555443
No 253
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.54 E-value=14 Score=41.57 Aligned_cols=28 Identities=39% Similarity=0.596 Sum_probs=23.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.|++|.++| || |.|||||+.-|+-.+.
T Consensus 348 ~~G~vIaLVG--Pt--GvGKTTtaakLAa~la 375 (559)
T PRK12727 348 ERGGVIALVG--PT--GAGKTTTIAKLAQRFA 375 (559)
T ss_pred cCCCEEEEEC--CC--CCCHHHHHHHHHHHHH
Confidence 3588888887 44 9999999999988773
No 254
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=55.41 E-value=33 Score=29.75 Aligned_cols=53 Identities=19% Similarity=0.005 Sum_probs=31.9
Q ss_pred cCCcEEEEecCCCCCCHHHHH--HHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSKAELN--AVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aEi~--~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.++|+||++|+.....+.++. ..+.++...+.. ...++. +=|.|-.+|-+.+.
T Consensus 106 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~gi~~l~~~l~ 160 (164)
T cd04101 106 KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLK-FFKTSA--LRGVGYEEPFESLA 160 (164)
T ss_pred CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEeC--CCCCChHHHHHHHH
Confidence 579999999998654443332 234555666764 444443 33567766665554
No 255
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=55.34 E-value=46 Score=28.96 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=35.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 450 GvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
+.|+||++|+-..-...+++...++.+..+.. +..+. ++=|+|-.+|-+.+..
T Consensus 113 ~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~ 165 (168)
T cd01897 113 NKPVIVVLNKIDLLTFEDLSEIEEEEELEGEE-VLKIS--TLTEEGVDEVKNKACE 165 (168)
T ss_pred cCCeEEEEEccccCchhhHHHHHHhhhhccCc-eEEEE--ecccCCHHHHHHHHHH
Confidence 89999999998765666666566666544444 33333 5667788887766543
No 256
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=55.21 E-value=19 Score=37.78 Aligned_cols=76 Identities=22% Similarity=0.176 Sum_probs=47.8
Q ss_pred CCHHHHHHHcCCCCcccccccCceeeechhhhhhhcC-CCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 29 LHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEG-SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 29 ~~I~~iA~~lgl~~~~le~YG~~kAKi~l~~l~~~~~-~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
.....||+-+-+-++.-.-+ . .....+++++.. .++..+|-||| |-|.||||++--|...|. ..|++..+
T Consensus 19 g~~~a~a~~it~~e~~~~~~-~---~~~~~l~~~~~~~~~~~~~igi~G----~~GaGKSTl~~~l~~~l~-~~g~~v~v 89 (332)
T PRK09435 19 GDRAALARAITLVESTRPDH-R---ALAQELLDALLPHTGNALRIGITG----VPGVGKSTFIEALGMHLI-EQGHKVAV 89 (332)
T ss_pred CCHHHHHHHHHHHhCCCchh-h---HHHHHHHHHHhhcCCCcEEEEEEC----CCCCCHHHHHHHHHHHHH-HCCCeEEE
Confidence 34566666665554432111 1 122345555432 23445677776 479999999999999995 67988877
Q ss_pred EecCCC
Q 010555 108 CLRQPS 113 (507)
Q Consensus 108 ~lRePS 113 (507)
.-=.||
T Consensus 90 i~~Dp~ 95 (332)
T PRK09435 90 LAVDPS 95 (332)
T ss_pred EEeCCC
Confidence 766765
No 257
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=55.21 E-value=9.8 Score=35.09 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=21.3
Q ss_pred CCCCcchhHhhHHHHHhhhcCCcEEEEec
Q 010555 82 LGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (507)
Q Consensus 82 ~GEGKTTttIGL~qaL~~~lgk~a~~~lR 110 (507)
.|.||||++.-|...|. ..|.+.. .+.
T Consensus 8 ~gsGKTtl~~~l~~~l~-~~G~~V~-viK 34 (155)
T TIGR00176 8 KNSGKTTLIERLVKALK-ARGYRVA-TIK 34 (155)
T ss_pred CCCCHHHHHHHHHHHHH-hcCCeEE-EEe
Confidence 49999999999999994 6687644 443
No 258
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.20 E-value=14 Score=39.82 Aligned_cols=32 Identities=34% Similarity=0.394 Sum_probs=26.8
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
.|+|-|||.+ ||||||-=|.+.| ...|+++..
T Consensus 117 ~~vIgITGTn------GKTTTt~li~~iL-~~~g~~~~~ 148 (488)
T PRK03369 117 RRWLVVTGTN------GKTTTTSMLHAML-IAAGRRSVL 148 (488)
T ss_pred CCEEEEECCC------cHHHHHHHHHHHH-HHcCCceEE
Confidence 4789999886 9999999999999 578887654
No 259
>PLN02840 tRNA dimethylallyltransferase
Probab=55.20 E-value=8.4 Score=41.82 Aligned_cols=28 Identities=32% Similarity=0.566 Sum_probs=23.8
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.+++|+++| |.|.||||+++-|++.++
T Consensus 19 ~~~~vi~I~G----ptgsGKTtla~~La~~~~ 46 (421)
T PLN02840 19 KKEKVIVISG----PTGAGKSRLALELAKRLN 46 (421)
T ss_pred cCCeEEEEEC----CCCCCHHHHHHHHHHHCC
Confidence 4577888887 559999999999999985
No 260
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=55.17 E-value=8.8 Score=35.66 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|+.|+++| |-|.||||+.-.|.+-+
T Consensus 23 ~~g~~i~I~G----~tGSGKTTll~aL~~~i 49 (186)
T cd01130 23 EARKNILISG----GTGSGKTTLLNALLAFI 49 (186)
T ss_pred hCCCEEEEEC----CCCCCHHHHHHHHHhhc
Confidence 3588999999 77999999998888777
No 261
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=55.15 E-value=8.8 Score=40.70 Aligned_cols=28 Identities=39% Similarity=0.567 Sum_probs=24.3
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010555 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lgk~a 105 (507)
+.||..|+|||.++.||..+| .+.|.+.
T Consensus 7 l~p~~~~~G~tsi~lgLl~~l-~~k~~kv 34 (354)
T COG0857 7 LIPTETGVGKTSISLGLLRAL-EQKGLKV 34 (354)
T ss_pred EeccCCCccHHHHHHHHHHHH-HHcCcee
Confidence 359999999999999999999 4777763
No 262
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.98 E-value=13 Score=38.99 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=27.6
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
.+.|-|||.+ ||||||-=|++.| .+.|+++.+
T Consensus 108 ~~~I~VTGT~------GKTTTt~li~~iL-~~~g~~~~~ 139 (448)
T PRK03803 108 APVIAITGSN------GKSTVTTLVGEMA-KAAGKRVAV 139 (448)
T ss_pred CCEEEEECCC------cHHHHHHHHHHHH-HhcCCCeEE
Confidence 5799999986 9999999999999 588987554
No 263
>PF07005 DUF1537: Protein of unknown function, DUF1537; InterPro: IPR010737 This entry represents a conserved region found in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis. This entry includes YgbK from Escherichia coli, which is dependent upon FlhDC, the master regulator of the flagellar genes. The ygbK gene appears to be regulated by sigmaF [].; PDB: 3DQQ_B 1YZY_B.
Probab=54.94 E-value=12 Score=35.57 Aligned_cols=67 Identities=22% Similarity=0.267 Sum_probs=49.9
Q ss_pred CHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhh
Q 010555 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 428 nl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
+++.|++|-..|..+++++.+-|..+|| |..-|++.++.|-+.+.+.+.. . .|..++-=+..|++..
T Consensus 10 ~l~~v~~g~~~l~~~l~~~~~~g~~ivV----~Da~t~~DL~~ia~a~~~~~~~-~----l~vGsagla~aL~~~~ 76 (223)
T PF07005_consen 10 DLEDVRRGPEALSAALAALQAEGARIVV----FDAETDEDLDAIAEALLELGRR-V----LWVGSAGLAAALARAL 76 (223)
T ss_dssp -HHHHCC-HHHHHHHHHHHHHTTECEEE----E-BSSCHHHHHHHHHCTT-S--------EEEESCHHHHHHHHHH
T ss_pred EHHHHhCcHHHHHHHHHHHHhCCCcEEE----EecCCHHHHHHHHHHHHhCCCc-e----EEecchHHHHHHHhhh
Confidence 5788999999999999999999999998 7999999999999998877765 2 5655555556666554
No 264
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=54.90 E-value=8.3 Score=39.90 Aligned_cols=35 Identities=43% Similarity=0.415 Sum_probs=25.8
Q ss_pred CCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCc
Q 010555 82 LGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (507)
Q Consensus 82 ~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~ 117 (507)
=|-|||||+--|+-|| +..|++.+..==.|--=-|
T Consensus 9 GGIGKST~~~Nlsaal-a~~G~kVl~iGCDPK~DST 43 (273)
T PF00142_consen 9 GGIGKSTTASNLSAAL-AEMGKKVLQIGCDPKADST 43 (273)
T ss_dssp TTSSHHHHHHHHHHHH-HHTT--EEEEEESSSSTSS
T ss_pred CCcccChhhhHHHHHH-HhccceeeEecccCCCccc
Confidence 3789999999999999 6999998876556544333
No 265
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=54.60 E-value=10 Score=41.95 Aligned_cols=30 Identities=40% Similarity=0.595 Sum_probs=24.5
Q ss_pred CCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 65 GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 65 ~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..+..++.|+|| |+|.|||||.-=|++-|+
T Consensus 41 ~~~~~~iLlLtG----P~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 41 GSSPKRILLLTG----PSGCGKTTTVKVLAKELG 70 (519)
T ss_pred cCCCcceEEEEC----CCCCCHHHHHHHHHHHhC
Confidence 334577889998 999999999988888774
No 266
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=54.26 E-value=13 Score=42.52 Aligned_cols=70 Identities=27% Similarity=0.388 Sum_probs=48.8
Q ss_pred cccCceeeech-hhh----hhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccc
Q 010555 47 LYGKYKAKVLL-SVL----DELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIK 121 (507)
Q Consensus 47 ~YG~~kAKi~l-~~l----~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiK 121 (507)
.||-.++|=.+ +++ ..+. .++++++..| |-|.||||.+.-|+.+|. +. |.+-+|
T Consensus 78 ~yGlee~ieriv~~l~~Aa~gl~--~~~~IL~LvG----PpG~GKSsLa~~la~~le-~~--------------~~Y~~k 136 (644)
T PRK15455 78 FYGMEEAIEQIVSYFRHAAQGLE--EKKQILYLLG----PVGGGKSSLAERLKSLME-RV--------------PIYVLK 136 (644)
T ss_pred ccCcHHHHHHHHHHHHHHHHhcC--CCCceEEEec----CCCCCchHHHHHHHHHHH-hC--------------cceeec
Confidence 58887777553 444 2343 3466666665 779999999999999995 43 677778
Q ss_pred cCCCCCCceeeecCcccccccc
Q 010555 122 GGAAGGGYSQVIPMDEFNLHLT 143 (507)
Q Consensus 122 GGAaGGGysQViPmediNLHfT 143 (507)
||- +.-||-+=-||+-
T Consensus 137 g~~------~~sP~~e~PL~L~ 152 (644)
T PRK15455 137 ANG------ERSPVNESPLGLF 152 (644)
T ss_pred CCC------CCCCCCCCCCCCC
Confidence 742 6667777777665
No 267
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=54.04 E-value=14 Score=42.35 Aligned_cols=35 Identities=31% Similarity=0.308 Sum_probs=29.4
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.++++||| ++|.||||+..++.+++ ...|++.+.|
T Consensus 368 ~~~~il~G----~aGTGKTtll~~i~~~~-~~~g~~V~~~ 402 (744)
T TIGR02768 368 GDIAVVVG----RAGTGKSTMLKAAREAW-EAAGYRVIGA 402 (744)
T ss_pred CCEEEEEe----cCCCCHHHHHHHHHHHH-HhCCCeEEEE
Confidence 46899998 68999999999999999 4678876655
No 268
>PLN02748 tRNA dimethylallyltransferase
Probab=54.04 E-value=9.4 Score=41.91 Aligned_cols=40 Identities=28% Similarity=0.421 Sum_probs=28.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh-hhcCCcEEEEec
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG-AFLDKKVVTCLR 110 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~-~~lgk~a~~~lR 110 (507)
+++++|+|+| |-|.||||+++-|++.++ ..+.-.++-.-|
T Consensus 20 ~~~~~i~i~G----ptgsGKs~la~~la~~~~~eii~~DsmQVYr 60 (468)
T PLN02748 20 GKAKVVVVMG----PTGSGKSKLAVDLASHFPVEIINADSMQVYS 60 (468)
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHHhcCeeEEcCchheeeC
Confidence 5688999988 459999999999999884 234444433333
No 269
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=53.75 E-value=11 Score=38.66 Aligned_cols=42 Identities=29% Similarity=0.315 Sum_probs=28.6
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCccccc
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNL 140 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNL 140 (507)
+|-+.| |-|.||||++--|..-|. ++ |+ +|..++++||++.+
T Consensus 64 IIGIaG----~~GSGKSTlar~L~~ll~-~~----------~~-------------~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 64 IISIAG----SVAVGKSTTARILQALLS-RW----------PE-------------HRKVELITTDGFLH 105 (290)
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHHh-hc----------CC-------------CCceEEEecccccc
Confidence 444555 669999999977765552 32 22 35678999998764
No 270
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=53.72 E-value=16 Score=39.05 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=20.2
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+++|++.| || |.|||||+.-|+-.+.
T Consensus 174 ~~vi~lvG--pt--GvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 174 KRVFILVG--PT--GVGKTTTIAKLAAIYG 199 (388)
T ss_pred CeEEEEEC--CC--CCCHHHHHHHHHHHHH
Confidence 45666654 55 9999999999998773
No 271
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=53.70 E-value=56 Score=34.15 Aligned_cols=83 Identities=23% Similarity=0.288 Sum_probs=44.6
Q ss_pred HHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCCCCcceecceeeeehhhHHHHHHh
Q 010555 197 RLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLAL 276 (507)
Q Consensus 197 rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~~~G~~re~gFdITvASEiMAIL~L 276 (507)
.|++.|.+-..+..++.+|..++.+ +|-...+.+..---+ +.-|=+++|.|| ++|++.-.|++
T Consensus 94 ~W~~~g~p~~~~~~~s~~~~~~y~r-~i~l~~~g~~~q~~l--~~~~VlvvG~GG--------------~Gs~ia~~La~ 156 (376)
T PRK08762 94 AWKDAGLPLERPRLLTDEQDERYSR-HLRLPEVGEEGQRRL--LEARVLLIGAGG--------------LGSPAALYLAA 156 (376)
T ss_pred HHHhcCCccccccCCCHHHHHHHHH-hcchhhcCHHHHHHH--hcCcEEEECCCH--------------HHHHHHHHHHH
Confidence 3444555556677788888877664 232111211100001 222445667764 46777777766
Q ss_pred cCCHHHHHHHhcCcEEeecCCCCceeecccc
Q 010555 277 TTSLADMRERLGKMVIGNSKAGDPITADDLG 307 (507)
Q Consensus 277 a~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~ 307 (507)
+- +++|++- |+.-|...+|+
T Consensus 157 ~G--------vg~i~lv---D~d~v~~sNl~ 176 (376)
T PRK08762 157 AG--------VGTLGIV---DHDVVDRSNLQ 176 (376)
T ss_pred cC--------CCeEEEE---eCCEecchhhc
Confidence 54 5667663 55566666665
No 272
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=53.69 E-value=17 Score=35.18 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.3
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|.+++|+| |.|.||||++.-++..+
T Consensus 28 ~~g~~~~i~g----~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 28 RKGELIILTA----GTGVGKTTFLREYALDL 54 (271)
T ss_pred cCCcEEEEEc----CCCCCHHHHHHHHHHHH
Confidence 5699999998 56999999999887766
No 273
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=53.64 E-value=30 Score=31.35 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=25.0
Q ss_pred HHHhccCCcEEEEecCCCCCCHHH----HHHHHHHHHHcC
Q 010555 444 ANTKAYGANVVVAVNMFATDSKAE----LNAVRNAAMAAG 479 (507)
Q Consensus 444 en~~~fGvpvVVAiN~F~tDT~aE----i~~v~~~~~~~G 479 (507)
+.++.+++|+++++|+.....+++ ++.+++++...+
T Consensus 123 ~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 123 EWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA 162 (179)
T ss_pred HHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence 334568999999999987655554 455666666554
No 274
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=53.60 E-value=11 Score=38.99 Aligned_cols=41 Identities=44% Similarity=0.426 Sum_probs=33.3
Q ss_pred CCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccC
Q 010555 82 LGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGG 123 (507)
Q Consensus 82 ~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKGG 123 (507)
=|-|||||+.-|+-|| +..||+.+..==.|--=-|+=+-||
T Consensus 10 GGIGKSTts~N~aAAl-a~~GkkVl~vGCDPKaDSTr~Llgg 50 (278)
T COG1348 10 GGIGKSTTSQNLAAAL-AELGKKVLIVGCDPKADSTRLLLGG 50 (278)
T ss_pred CCcCcchhHHHHHHHH-HHcCCeEEEEcCCCCcchHHHHhCC
Confidence 3789999999999999 6899999987777766666666554
No 275
>PRK10536 hypothetical protein; Provisional
Probab=53.58 E-value=21 Score=36.69 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=26.8
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHH-HHhhhcCCcEEEEec
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQ-ALGAFLDKKVVTCLR 110 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~q-aL~~~lgk~a~~~lR 110 (507)
..+|++|| |+|.|||++++.++. +|-+. ..+.++..|
T Consensus 74 ~~lV~i~G----~aGTGKT~La~a~a~~~l~~~-~~~kIiI~R 111 (262)
T PRK10536 74 KQLIFATG----EAGCGKTWISAAKAAEALIHK-DVDRIIVTR 111 (262)
T ss_pred CCeEEEEC----CCCCCHHHHHHHHHHHHHhcC-CeeEEEEeC
Confidence 46999998 799999999999988 44121 245555555
No 276
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=53.56 E-value=10 Score=40.96 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=24.2
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..|+||++| |-|.|||+..-+|+|-|.
T Consensus 176 ~NRliLlhG----PPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 176 WNRLILLHG----PPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeeEEEEeC----CCCCChhHHHHHHHHhhe
Confidence 368999998 889999999999999995
No 277
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=53.38 E-value=15 Score=38.62 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=43.5
Q ss_pred HHHHHHHcCCCCcccccccC----ceeeechh--hhhhh-c--CCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhc
Q 010555 31 ISEIAQELNLKPNHYDLYGK----YKAKVLLS--VLDEL-E--GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL 101 (507)
Q Consensus 31 I~~iA~~lgl~~~~le~YG~----~kAKi~l~--~l~~~-~--~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~l 101 (507)
+.+|-+++|=. .+-..|. ...+++.. -||.+ . .=|.|++++|.| |.|.||||++.-++-.. .+.
T Consensus 10 ~~~i~~~~g~~--~~~~~~~~~~~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~G----p~GsGKTtLal~~~~~~-~~~ 82 (325)
T cd00983 10 LKQIEKKFGKG--SIMKLGDDAVQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYG----PESSGKTTLALHAIAEA-QKL 82 (325)
T ss_pred HHHHHHHhCCc--ceEECccccccCCceecCCCHHHHHHhcCCCccCCeEEEEEC----CCCCCHHHHHHHHHHHH-HHc
Confidence 56676666642 2334443 12234432 34443 2 347899999999 78999999999887766 355
Q ss_pred CCcEE
Q 010555 102 DKKVV 106 (507)
Q Consensus 102 gk~a~ 106 (507)
|.+++
T Consensus 83 g~~~v 87 (325)
T cd00983 83 GGTVA 87 (325)
T ss_pred CCCEE
Confidence 65544
No 278
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=53.35 E-value=7.4 Score=33.33 Aligned_cols=18 Identities=50% Similarity=0.711 Sum_probs=15.5
Q ss_pred CCCCCcchhHhhHHHHHh
Q 010555 81 PLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~ 98 (507)
|.|.||||++..|+..++
T Consensus 7 ~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 7 PAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 469999999999988774
No 279
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=53.11 E-value=46 Score=30.69 Aligned_cols=55 Identities=7% Similarity=-0.051 Sum_probs=33.8
Q ss_pred ccCCcEEEEecCCCCC--CHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 448 AYGANVVVAVNMFATD--SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 448 ~fGvpvVVAiN~F~tD--T~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
..++|+|++.|+-.-. .....+.+.++|++.+...+..+.. +=|+|-.++-+.++
T Consensus 108 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa--k~~~~v~e~f~~l~ 164 (201)
T cd04107 108 GEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSA--KEGINIEEAMRFLV 164 (201)
T ss_pred CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeC--CCCCCHHHHHHHHH
Confidence 4689999999997653 2233455778888888433443332 33566655544443
No 280
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=53.04 E-value=20 Score=33.83 Aligned_cols=56 Identities=14% Similarity=0.222 Sum_probs=39.1
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchh
Q 010555 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGD 145 (507)
Q Consensus 66 ~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD 145 (507)
-+.|.+++|+| |.|.||||.+.-++-.+....|.+ =|.|+.+
T Consensus 10 l~~G~l~lI~G----~~G~GKT~~~~~~~~~~~~~~g~~----------------------------------vly~s~E 51 (242)
T cd00984 10 LQPGDLIIIAA----RPSMGKTAFALNIAENIAKKQGKP----------------------------------VLFFSLE 51 (242)
T ss_pred CCCCeEEEEEe----CCCCCHHHHHHHHHHHHHHhCCCc----------------------------------eEEEeCC
Confidence 36799999999 469999999988765552121211 2567777
Q ss_pred hhHHHHHHhHHHHH
Q 010555 146 IHAITAANNLLAAA 159 (507)
Q Consensus 146 ~HAItaA~NLlaA~ 159 (507)
.+.-...+++++..
T Consensus 52 ~~~~~~~~r~~~~~ 65 (242)
T cd00984 52 MSKEQLLQRLLASE 65 (242)
T ss_pred CCHHHHHHHHHHHh
Confidence 77777778876643
No 281
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=52.99 E-value=47 Score=34.30 Aligned_cols=81 Identities=12% Similarity=0.116 Sum_probs=60.1
Q ss_pred ehHHHhcCCCCCccCCCCCchhccccCHHHHHHH--hhhHHHHHHHHhccCCcEEEE--ecCCCCCCHHHHHHHHHHHHH
Q 010555 402 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAG--CVNLARHIANTKAYGANVVVA--VNMFATDSKAELNAVRNAAMA 477 (507)
Q Consensus 402 vRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G--~~NL~~HIen~~~fGvpvVVA--iN~F~tDT~aEi~~v~~~~~~ 477 (507)
++.||-. |+..+..|- +...++-++.+.++ .+...+-|++++++|++.|.+ |=-+|.+|.+++....+++.+
T Consensus 103 l~~l~~~-Gv~risiGv---qS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~ 178 (360)
T TIGR00539 103 CKGLKGA-GINRLSLGV---QSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKE 178 (360)
T ss_pred HHHHHHc-CCCEEEEec---ccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHc
Confidence 4677766 577777772 45556667777553 567888899999999975433 556899999999999999999
Q ss_pred cCCCeEEEc
Q 010555 478 AGAFDAVVC 486 (507)
Q Consensus 478 ~G~~~~~~s 486 (507)
.++..+.+.
T Consensus 179 l~~~~is~y 187 (360)
T TIGR00539 179 LPINHLSAY 187 (360)
T ss_pred cCCCEEEee
Confidence 999644433
No 282
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=52.99 E-value=48 Score=29.08 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=36.8
Q ss_pred HHHHHHhccCCcEEEEecCCCCCCHHHHH----HHHHHHHHcCC-------------CeEEEccccccCchhhHHHHHhh
Q 010555 441 RHIANTKAYGANVVVAVNMFATDSKAELN----AVRNAAMAAGA-------------FDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 441 ~HIen~~~fGvpvVVAiN~F~tDT~aEi~----~v~~~~~~~G~-------------~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
.+++.+++.+.|+++++|+...-++++++ .+++..+..+. ..++.+. +.-|.|-.+|-+.+
T Consensus 105 ~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S--a~~g~gi~~l~~~l 182 (189)
T cd00881 105 EHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGS--ALTGIGVEELLEAI 182 (189)
T ss_pred HHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEe--cccCcCHHHHHHHH
Confidence 34555666899999999997655545544 34444443221 2233333 45577777776655
Q ss_pred hh
Q 010555 504 LH 505 (507)
Q Consensus 504 ~~ 505 (507)
.+
T Consensus 183 ~~ 184 (189)
T cd00881 183 VE 184 (189)
T ss_pred Hh
Confidence 43
No 283
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=52.96 E-value=10 Score=36.02 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=36.4
Q ss_pred ccccccCceeeechhhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCc
Q 010555 44 HYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (507)
Q Consensus 44 ~le~YG~~kAKi~l~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~ 117 (507)
.+.-|..|+-.+++++ ..| +++++| |-|+||||+.-.|.-.+ +......+|.++.|-+
T Consensus 5 ~~~~fr~~~~~~~l~~-------~~g-~~~i~G----~nGsGKStll~al~~l~----~~~~~~~~~~~~~~~~ 62 (197)
T cd03278 5 ELKGFKSFADKTTIPF-------PPG-LTAIVG----PNGSGKSNIIDAIRWVL----GEQSAKSLRGEKMSDV 62 (197)
T ss_pred EEeCCcCcCCCeeeec-------CCC-cEEEEC----CCCCCHHHHHHHHHHHh----ccccchhhcccCHHHH
Confidence 4566777755566652 236 777777 66999999886664333 3333444666666655
No 284
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=52.77 E-value=38 Score=39.62 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=35.0
Q ss_pred HHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHH-------HHHcC--CCeEEEccccccCchhhHHHHHhhh
Q 010555 441 RHIANTKAYGANVVVAVNMFATDSKAELNAVRNA-------AMAAG--AFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 441 ~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~-------~~~~G--~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.|+..++.+++|+||++|+..-... ..+.+.+. +++.| +. ++. .=+.=|+|-.+|-+.++
T Consensus 380 e~i~~a~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp-~vp--vSAktG~GI~eLle~I~ 448 (787)
T PRK05306 380 EAINHAKAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTI-FVP--VSAKTGEGIDELLEAIL 448 (787)
T ss_pred HHHHHHHhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCce-EEE--EeCCCCCCchHHHHhhh
Confidence 4566778899999999999765321 12223222 23333 22 332 33455777777776654
No 285
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=52.68 E-value=38 Score=30.65 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=29.9
Q ss_pred HHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010555 440 ARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 440 ~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~ 481 (507)
.+-++.++++++|+.+.+|++...+.. .+.+++++++.|.+
T Consensus 133 ~~~~~~l~~~~~~~~vV~N~~~~~~~~-~~~~~~~~~~~~~~ 173 (179)
T cd03110 133 ERAVELVRHFGIPVGVVINKYDLNDEI-AEEIEDYCEEEGIP 173 (179)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCCcch-HHHHHHHHHHcCCC
Confidence 333455566789999999999876543 34577888888886
No 286
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=52.52 E-value=17 Score=32.19 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=29.7
Q ss_pred hHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHH
Q 010555 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMA 477 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~ 477 (507)
.+..|++-+.++|+|+|+.-=-| +++|++.+++++++
T Consensus 79 ~~~~~~~~~~~~g~~~ViGTTG~---~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 79 AVYDNLEYALKHGVPLVIGTTGF---SDEQIDELEELAKK 115 (124)
T ss_dssp HHHHHHHHHHHHT-EEEEE-SSS---HHHHHHHHHHHTTT
T ss_pred HhHHHHHHHHhCCCCEEEECCCC---CHHHHHHHHHHhcc
Confidence 56678888888999999988777 68999999998876
No 287
>PRK01184 hypothetical protein; Provisional
Probab=52.51 E-value=10 Score=34.66 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=22.6
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecC
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQ 111 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRe 111 (507)
++|++|| |-|.||||++. +++ .+|...+.+ +|+
T Consensus 2 ~~i~l~G----~~GsGKsT~a~-~~~----~~g~~~i~~~d~lr~ 37 (184)
T PRK01184 2 KIIGVVG----MPGSGKGEFSK-IAR----EMGIPVVVMGDVIRE 37 (184)
T ss_pred cEEEEEC----CCCCCHHHHHH-HHH----HcCCcEEEhhHHHHH
Confidence 4678888 56999999875 433 456666654 665
No 288
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=52.10 E-value=71 Score=28.16 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHhcc--CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 436 CVNLARHIANTKAY--GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 436 ~~NL~~HIen~~~f--GvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
+.++.+.++.++++ ++|++|+.|+-.-+. ++.+...+++++.+.+ +..+ =++=|.|-.+|-+.++
T Consensus 88 ~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gv~~l~~~l~ 154 (161)
T cd04124 88 YKNLSKWYEELREYRPEIPCIVVANKIDLDP-SVTQKKFNFAEKHNLP-LYYV--SAADGTNVVKLFQDAI 154 (161)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECccCch-hHHHHHHHHHHHcCCe-EEEE--eCCCCCCHHHHHHHHH
Confidence 44555566666554 899999999976532 2333445677767765 3333 2345566666555443
No 289
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=51.95 E-value=18 Score=35.24 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=24.7
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
+.|..++|+| |.|.||||++.-+...+ .+-|.+
T Consensus 22 ~~g~~~~i~G----~~G~GKTtl~~~~~~~~-~~~g~~ 54 (230)
T PRK08533 22 PAGSLILIEG----DESTGKSILSQRLAYGF-LQNGYS 54 (230)
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHH-HhCCCc
Confidence 6789999999 56999999987766655 233543
No 290
>COG4240 Predicted kinase [General function prediction only]
Probab=51.83 E-value=12 Score=38.80 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=24.7
Q ss_pred EeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEe
Q 010555 74 VGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL 109 (507)
Q Consensus 74 VTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~l 109 (507)
+-+|+ -|-|+||||+++-|.--| .+.|-.+++.+
T Consensus 52 i~gis-GpQGSGKStls~~i~~~L-~~kg~ert~~l 85 (300)
T COG4240 52 IVGIS-GPQGSGKSTLSALIVRLL-AAKGLERTATL 85 (300)
T ss_pred EEEee-cCCCCchhhHHHHHHHHH-HHhcccceEEe
Confidence 33442 489999999999999999 57774445443
No 291
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=51.67 E-value=7.7 Score=35.14 Aligned_cols=16 Identities=50% Similarity=0.628 Sum_probs=15.0
Q ss_pred CCCcchhHhhHHHHHh
Q 010555 83 GEGKSTTTVGLCQALG 98 (507)
Q Consensus 83 GEGKTTttIGL~qaL~ 98 (507)
|.||||+..-|++.|+
T Consensus 2 GsGKStvg~~lA~~L~ 17 (158)
T PF01202_consen 2 GSGKSTVGKLLAKRLG 17 (158)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHhC
Confidence 8999999999999995
No 292
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=51.43 E-value=21 Score=34.52 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=28.8
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhHhhHH-HHHhhhcCCcE-EEEecC
Q 010555 66 SADGYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKV-VTCLRQ 111 (507)
Q Consensus 66 ~~~GklIlVTaitPTP~GEGKTTttIGL~-qaL~~~lgk~a-~~~lRe 111 (507)
=|.|..+||+| |.|.||||.+.=+. .++ +-|.++ ++++-|
T Consensus 18 ~~~gs~~lI~G----~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee 59 (237)
T TIGR03877 18 IPERNVVLLSG----GPGTGKSIFSQQFLWNGL--QMGEPGIYVALEE 59 (237)
T ss_pred CcCCeEEEEEc----CCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeC
Confidence 36799999999 88999999886543 444 347665 445555
No 293
>PRK06217 hypothetical protein; Validated
Probab=51.43 E-value=9.8 Score=35.12 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=18.2
Q ss_pred EEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|+|+|. .|.||||++.-|++.|
T Consensus 4 I~i~G~----~GsGKSTla~~L~~~l 25 (183)
T PRK06217 4 IHITGA----SGSGTTTLGAALAERL 25 (183)
T ss_pred EEEECC----CCCCHHHHHHHHHHHc
Confidence 777774 5999999998888776
No 294
>PLN02772 guanylate kinase
Probab=51.35 E-value=12 Score=40.41 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=43.9
Q ss_pred cccCceeeechhhhhhhcC--C-CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccc
Q 010555 47 LYGKYKAKVLLSVLDELEG--S-ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (507)
Q Consensus 47 ~YG~~kAKi~l~~l~~~~~--~-~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FG 119 (507)
||.+-.-|+--+-.-+.+. . .+.|+|+++| |.|.||||+.--|.+-+...++...-.+=|.|-.|.+-|
T Consensus 110 ~~~~~~~~~~~~eV~~~~~~~~~~~~k~iVlsG----PSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG 181 (398)
T PLN02772 110 PFVREQKKLLGTEVVAWSKGVRGNAEKPIVISG----PSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDG 181 (398)
T ss_pred HHHHhhcccccceeeecccCCCCCCCcEEEEEC----CCCCCHHHHHHHHhhhccccccccccccCCCCcccccCC
Confidence 5666555543322222221 2 2578999998 889999998877766553345655666789888875543
No 295
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=51.32 E-value=67 Score=28.49 Aligned_cols=55 Identities=7% Similarity=-0.093 Sum_probs=35.9
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccc-cCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHA-HGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa-~GGeGa~~LA~~v~ 504 (507)
-++|+|++.|+..-....+ .+...++++..+.. +..+.... .++++-.++-..++
T Consensus 108 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~~~~i~~~f~~l~ 165 (170)
T cd04115 108 NEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMP-LFETSAKDPSENDHVEAIFMTLA 165 (170)
T ss_pred CCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCc-EEEEeccCCcCCCCHHHHHHHHH
Confidence 4699999999977543332 23455677777765 66666664 45777766665554
No 296
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=51.31 E-value=12 Score=37.44 Aligned_cols=33 Identities=33% Similarity=0.349 Sum_probs=27.4
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
|-++||| |.-|-|||++|-+|+|+| ..-|.+++
T Consensus 3 ~~~fVtG---TDT~VGKTv~S~aL~~~l-~~~g~~~~ 35 (223)
T COG0132 3 KRFFVTG---TDTGVGKTVVSAALAQAL-KQQGYSVA 35 (223)
T ss_pred ceEEEEe---CCCCccHHHHHHHHHHHH-HhCCCeeE
Confidence 4577777 678999999999999999 46788865
No 297
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=51.29 E-value=65 Score=27.52 Aligned_cols=65 Identities=15% Similarity=0.094 Sum_probs=41.4
Q ss_pred hHHHHHHHHh-ccCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 438 NLARHIANTK-AYGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 438 NL~~HIen~~-~fGvpvVVAiN~F~tDT--~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
++..++..++ .+++|+||++|+..... ..+.+..++++++.+++ ++.++ +.=|+|-.+|-+.+.+
T Consensus 92 ~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~ 159 (164)
T cd04139 92 EFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVP-YVETS--AKTRQNVEKAFYDLVR 159 (164)
T ss_pred HHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEee--CCCCCCHHHHHHHHHH
Confidence 3444444443 36899999999987643 23455667788888875 44333 3445787777766543
No 298
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=51.28 E-value=24 Score=35.63 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=26.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHh-hHHHHHhhhcCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTV-GLCQALGAFLDK 103 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttI-GL~qaL~~~lgk 103 (507)
|.|.++.|||. .|+||||..- .|..++.++++.
T Consensus 19 p~g~~~~vtGv----SGsGKStL~~~~l~~~~~~~~~~ 52 (261)
T cd03271 19 PLGVLTCVTGV----SGSGKSSLINDTLYPALARRLHL 52 (261)
T ss_pred cCCcEEEEECC----CCCchHHHHHHHHHHHHHHHhcc
Confidence 78999999996 6999999985 667777544443
No 299
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=50.99 E-value=7.7 Score=34.61 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=15.0
Q ss_pred CCCCCcchhHhhHHHHH
Q 010555 81 PLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL 97 (507)
|.|.||||++.-|++.|
T Consensus 6 ~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 6 VAGSGKSTIASALAHRL 22 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 68999999998888777
No 300
>PRK08084 DNA replication initiation factor; Provisional
Probab=50.99 E-value=19 Score=34.98 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=29.3
Q ss_pred hhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010555 58 SVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 58 ~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a 105 (507)
..+.+....+.+..++++| |.|.|||++..+++..+. ..|+++
T Consensus 34 ~~l~~~~~~~~~~~l~l~G----p~G~GKThLl~a~~~~~~-~~~~~v 76 (235)
T PRK08084 34 AALQNALRQEHSGYIYLWS----REGAGRSHLLHAACAELS-QRGRAV 76 (235)
T ss_pred HHHHHHHhCCCCCeEEEEC----CCCCCHHHHHHHHHHHHH-hCCCeE
Confidence 3444433334455777776 789999999999998885 446553
No 301
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=50.96 E-value=35 Score=28.85 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHhccCCc-EEEEecCCCCCCHHHHHHHHHH
Q 010555 436 CVNLARHIANTKAYGAN-VVVAVNMFATDSKAELNAVRNA 474 (507)
Q Consensus 436 ~~NL~~HIen~~~fGvp-vVVAiN~F~tDT~aEi~~v~~~ 474 (507)
++...+-++.+++.|++ ++..+=-++.+|++|++.+.++
T Consensus 126 ~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~~~~ 165 (166)
T PF04055_consen 126 FERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEETIRF 165 (166)
T ss_dssp HHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHhCc
Confidence 34666677888889999 7888888999999999888776
No 302
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=50.90 E-value=12 Score=38.85 Aligned_cols=45 Identities=27% Similarity=0.367 Sum_probs=31.1
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccc
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFN 139 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediN 139 (507)
...+|+ ||-= |-|.|||||+-=|..+| ++-+.... .|++|||-|-
T Consensus 80 ~~pfII--giaG-svavGKST~ar~L~~ll-~~~~~~~~-----------------------v~lvpmDGFh 124 (283)
T COG1072 80 QRPFII--GIAG-SVAVGKSTTARILQALL-SRWPESPK-----------------------VDLVTMDGFH 124 (283)
T ss_pred CCCEEE--Eecc-CccccHHHHHHHHHHHH-hhCCCCCc-----------------------eEEEeccccc
Confidence 344544 3322 45899999999998888 46555432 4999999873
No 303
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=50.80 E-value=11 Score=32.29 Aligned_cols=77 Identities=26% Similarity=0.321 Sum_probs=44.9
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCc---EEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHH
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKK---VVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLA 157 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~---a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaA~NLla 157 (507)
|.|.|||+++-=|++.|..+++.. .+-. |.|.--.-=|.+|- -|+=+|||.=--++- . -+=.+.+-
T Consensus 6 ~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~-~~~~~~~w~gY~~q-------~vvi~DD~~~~~~~~--~-~~~~~~l~ 74 (107)
T PF00910_consen 6 PPGIGKSTLAKELAKDLLKHIGEPTKDSVYT-RNPGDKFWDGYQGQ-------PVVIIDDFGQDNDGY--N-YSDESELI 74 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCCCcEEe-CCCccchhhccCCC-------cEEEEeecCcccccc--c-hHHHHHHH
Confidence 459999999999999997666433 3333 77766555555532 355555553222110 0 01244556
Q ss_pred HHHHhhhhccc
Q 010555 158 AAIDTRIFHEA 168 (507)
Q Consensus 158 A~iDn~i~~~n 168 (507)
.++|+.-|.-+
T Consensus 75 ~l~s~~~~~~~ 85 (107)
T PF00910_consen 75 RLISSNPFQPN 85 (107)
T ss_pred HHHhcCCcccc
Confidence 66777766654
No 304
>PRK14737 gmk guanylate kinase; Provisional
Probab=50.70 E-value=15 Score=34.77 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=32.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~ 117 (507)
..+++|+++| |.|.||||+.--|.+-+. .+....-.+=|.|-.|-+
T Consensus 2 ~~~~~ivl~G----psG~GK~tl~~~l~~~~~-~~~~~v~~TTR~~r~gE~ 47 (186)
T PRK14737 2 ASPKLFIISS----VAGGGKSTIIQALLEEHP-DFLFSISCTTRAPRPGDE 47 (186)
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHhcCC-ccccccCccCCCCCCCCC
Confidence 3589999998 789999999888876552 333333456677776643
No 305
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=50.66 E-value=15 Score=40.90 Aligned_cols=39 Identities=26% Similarity=0.208 Sum_probs=29.7
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRe 111 (507)
+.+++|++||.. |+||||.+-.|.+.|. ..|. ....|+.
T Consensus 458 ~~~~~i~~~G~~----gsGKst~a~~l~~~l~-~~~~-~~~~l~~ 496 (632)
T PRK05506 458 QKPATVWFTGLS----GSGKSTIANLVERRLH-ALGR-HTYLLDG 496 (632)
T ss_pred CCcEEEEecCCC----CchHHHHHHHHHHHHH-HcCC-CEEEEcC
Confidence 468999999985 9999999999999984 3343 3455543
No 306
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=50.40 E-value=22 Score=37.18 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=29.6
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
++-|||+| |-|.||||+.-.|.+.+.......-++++-+|.
T Consensus 144 ~~nilI~G----~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~ 184 (323)
T PRK13833 144 RLNIVISG----GTGSGKTTLANAVIAEIVASAPEDRLVILEDTA 184 (323)
T ss_pred CCeEEEEC----CCCCCHHHHHHHHHHHHhcCCCCceEEEecCCc
Confidence 56789998 459999999999998873223344567776554
No 307
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=50.35 E-value=14 Score=37.81 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.7
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
||++|| +-|.||||.+--|+++|.
T Consensus 3 LiIlTG----yPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTG----YPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEec----CCCCCchHHHHHHHHHHH
Confidence 788998 469999999999999995
No 308
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=50.21 E-value=21 Score=39.50 Aligned_cols=32 Identities=31% Similarity=0.292 Sum_probs=24.0
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk 103 (507)
.|++|++.| |-|.|||||..-|+-.+-.+.|.
T Consensus 255 ~g~Vi~LvG----pnGvGKTTTiaKLA~~~~~~~G~ 286 (484)
T PRK06995 255 RGGVFALMG----PTGVGKTTTTAKLAARCVMRHGA 286 (484)
T ss_pred CCcEEEEEC----CCCccHHHHHHHHHHHHHHhcCC
Confidence 577888877 45999999999999777323343
No 309
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=50.16 E-value=17 Score=35.83 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=25.1
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHH-HHHhhhcCCcEEEEecCCC
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~-qaL~~~lgk~a~~~lRePS 113 (507)
-++|.++| |+|.|||.+++..+ +.+ ..-..+-++..|.+.
T Consensus 19 ~~~v~~~G----~AGTGKT~LA~a~Al~~v-~~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 19 NDLVIVNG----PAGTGKTFLALAAALELV-KEGEYDKIIITRPPV 59 (205)
T ss_dssp -SEEEEE------TTSSTTHHHHHHHHHHH-HTTS-SEEEEEE-S-
T ss_pred CCeEEEEC----CCCCcHHHHHHHHHHHHH-HhCCCcEEEEEecCC
Confidence 45788877 79999999998776 344 233446778888765
No 310
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=50.15 E-value=18 Score=41.44 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=25.6
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLD 102 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lg 102 (507)
..++++||| ++|.||||+...+.+++ ...|
T Consensus 337 ~~~~~iitG----gpGTGKTt~l~~i~~~~-~~~~ 366 (720)
T TIGR01448 337 QHKVVILTG----GPGTGKTTITRAIIELA-EELG 366 (720)
T ss_pred hCCeEEEEC----CCCCCHHHHHHHHHHHH-HHcC
Confidence 356899987 78999999999999999 4666
No 311
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=50.02 E-value=18 Score=33.05 Aligned_cols=32 Identities=38% Similarity=0.335 Sum_probs=26.5
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
+-|.||||++.-|+..+ ...|.+..+.-=.|+
T Consensus 7 ~~GsGKTt~~~~l~~~~-~~~g~~v~ii~~D~~ 38 (148)
T cd03114 7 VPGAGKSTLIDALITAL-RARGKRVAVLAIDPS 38 (148)
T ss_pred CCCCcHHHHHHHHHHHH-HHCCCEEEEEEeCCC
Confidence 57999999999999999 477888877666663
No 312
>PRK13948 shikimate kinase; Provisional
Probab=49.84 E-value=14 Score=35.26 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=22.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.+..|+++|+ .|.||||+..-|++.|+
T Consensus 8 ~~~~~I~LiG~----~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGF----MGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECC----CCCCHHHHHHHHHHHcC
Confidence 45677888886 59999999988888773
No 313
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=49.77 E-value=98 Score=27.16 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=34.2
Q ss_pred cCCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aE--------------i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
-++|++++.|+..-..+.+ .+...++|++.|...+..|+ ++=|+|-.+|-+.++
T Consensus 101 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S--a~~~~~v~~lf~~l~ 168 (174)
T smart00174 101 PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECS--ALTQEGVREVFEEAI 168 (174)
T ss_pred CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEec--CCCCCCHHHHHHHHH
Confidence 3899999999976543221 12335678888874355443 455677777766654
No 314
>PRK09183 transposase/IS protein; Provisional
Probab=49.76 E-value=22 Score=35.47 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=27.0
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+.|.-|+++| |.|.||||++.+|+..+. .-|+++.
T Consensus 100 ~~~~~v~l~G----p~GtGKThLa~al~~~a~-~~G~~v~ 134 (259)
T PRK09183 100 ERNENIVLLG----PSGVGKTHLAIALGYEAV-RAGIKVR 134 (259)
T ss_pred hcCCeEEEEe----CCCCCHHHHHHHHHHHHH-HcCCeEE
Confidence 4567777777 669999999999988874 5676653
No 315
>PRK06526 transposase; Provisional
Probab=49.62 E-value=10 Score=37.94 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=40.4
Q ss_pred HHHHHHHcCCCCc-ccccccCc-eeeechhhhhhhcC---CCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010555 31 ISEIAQELNLKPN-HYDLYGKY-KAKVLLSVLDELEG---SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 31 I~~iA~~lgl~~~-~le~YG~~-kAKi~l~~l~~~~~---~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a 105 (507)
+...=++.+++.. .++-|=.. .-+++...+..+.. -..++-|+++| |.|.|||+++.+|+..+. +.|+++
T Consensus 55 ~~~~lk~a~~p~~~~le~fd~~~~~~~~~~~~~~l~~~~fi~~~~nlll~G----p~GtGKThLa~al~~~a~-~~g~~v 129 (254)
T PRK06526 55 GEGRIRAARFPARKSLEEFDFDHQRSLKRDTIAHLGTLDFVTGKENVVFLG----PPGTGKTHLAIGLGIRAC-QAGHRV 129 (254)
T ss_pred HHHHHHhCCCCCCCChhhccCccCCCcchHHHHHHhcCchhhcCceEEEEe----CCCCchHHHHHHHHHHHH-HCCCch
Confidence 4455566777764 44443211 11233333322211 12344577777 669999999999999884 668765
No 316
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=49.62 E-value=55 Score=27.75 Aligned_cols=65 Identities=11% Similarity=-0.017 Sum_probs=40.8
Q ss_pred hHHHHHHHHhc-cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 438 NLARHIANTKA-YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 438 NL~~HIen~~~-fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.+...+.+... .++|++|++|+....... -.+.+.++++..+.+-+.+| ++-|+|-.+|-+.+++
T Consensus 91 ~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S---~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 91 GYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETS---AKDNINIDEVFKLLVR 158 (160)
T ss_pred HHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEec---cCCCCCHHHHHHHHHh
Confidence 44455555544 689999999998755322 22456666777776522222 3456788888777765
No 317
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=49.45 E-value=18 Score=36.03 Aligned_cols=33 Identities=24% Similarity=0.158 Sum_probs=25.4
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
|.|-|++. .|.||||+.-.|...|. ..|.+..+
T Consensus 2 ~vi~ivG~----~gsGKTtl~~~l~~~L~-~~G~~V~v 34 (229)
T PRK14494 2 RAIGVIGF----KDSGKTTLIEKILKNLK-ERGYRVAT 34 (229)
T ss_pred eEEEEECC----CCChHHHHHHHHHHHHH-hCCCeEEE
Confidence 35666664 39999999999999994 66877544
No 318
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=49.44 E-value=64 Score=27.86 Aligned_cols=55 Identities=7% Similarity=-0.011 Sum_probs=35.8
Q ss_pred ccCCcEEEEecCCCCC-CHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 448 AYGANVVVAVNMFATD-SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 448 ~fGvpvVVAiN~F~tD-T~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
..++|++|++|+-... .+...+...+++++.++. +..+.. +=|+|-.++-+.++.
T Consensus 104 ~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~gi~~~~~~~~~ 159 (161)
T cd01863 104 NNDIVKMLVGNKIDKENREVTREEGLKFARKHNML-FIETSA--KTRDGVQQAFEELVE 159 (161)
T ss_pred CCCCcEEEEEECCcccccccCHHHHHHHHHHcCCE-EEEEec--CCCCCHHHHHHHHHH
Confidence 4789999999986432 122334566778877775 444333 336888888777664
No 319
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=49.42 E-value=51 Score=28.28 Aligned_cols=54 Identities=7% Similarity=-0.048 Sum_probs=35.5
Q ss_pred cCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 449 YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT--~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.++|+||++|+-.-.. +...+.+++++++.|.. ++. .=+.-|+|-.+|-+.+++
T Consensus 104 ~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e--~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 104 PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLP-FFE--TSAKTNTNVEEAFEELAR 159 (164)
T ss_pred CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCe-EEE--EeCCCCCCHHHHHHHHHH
Confidence 4799999999865433 22456677888888886 433 334556677776665543
No 320
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=49.03 E-value=87 Score=27.11 Aligned_cols=54 Identities=13% Similarity=0.016 Sum_probs=34.2
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
..+|++++.|+..-..+. +.+.+.+++++.+.. +..++ ++-|+|-.+|=+.+++
T Consensus 104 ~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~ 159 (164)
T smart00173 104 DDVPIVLVGNKCDLESERVVSTEEGKELARQWGCP-FLETS--AKERVNVDEAFYDLVR 159 (164)
T ss_pred CCCCEEEEEECccccccceEcHHHHHHHHHHcCCE-EEEee--cCCCCCHHHHHHHHHH
Confidence 589999999997643222 334566677777775 44333 3447777776666553
No 321
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=48.97 E-value=1.1e+02 Score=30.31 Aligned_cols=47 Identities=17% Similarity=0.122 Sum_probs=36.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhH
Q 010555 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAF 497 (507)
Q Consensus 450 GvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~ 497 (507)
|+|+-|.+-.=. =|++|+....+.|.++|+..+-.|+.|..+|.--.
T Consensus 117 g~~lKvIlE~~~-L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~ 163 (211)
T TIGR00126 117 GVLLKVIIETGL-LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVE 163 (211)
T ss_pred CCeEEEEEecCC-CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHH
Confidence 888888776433 35589999999999999986667788998776444
No 322
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=48.90 E-value=58 Score=33.23 Aligned_cols=49 Identities=12% Similarity=0.077 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 010555 436 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVV 485 (507)
Q Consensus 436 ~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~ 485 (507)
+....+.|+.++++|+++.|... ...++.+|++.+.+++++.|+..+.+
T Consensus 131 f~~v~~~i~~l~~~g~~v~v~~v-v~~~N~~~l~~~~~~~~~lg~~~i~~ 179 (358)
T TIGR02109 131 FEQKLAMARAVKAAGLPLTLNFV-IHRHNIDQIPEIIELAIELGADRVEL 179 (358)
T ss_pred HHHHHHHHHHHHhCCCceEEEEE-eccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 44556677888889999876553 34578899999999999999975544
No 323
>PF13173 AAA_14: AAA domain
Probab=48.81 E-value=17 Score=31.63 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=21.8
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
++|.++++| |.|.||||+.-=+++-+
T Consensus 1 n~~~~~l~G----~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 1 NRKIIILTG----PRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCCeEEEEC----CCCCCHHHHHHHHHHHh
Confidence 468899998 68999999988777766
No 324
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=48.77 E-value=12 Score=40.63 Aligned_cols=29 Identities=41% Similarity=0.532 Sum_probs=24.7
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
|+=|..+.|||++|.||++.| .+.|.++.
T Consensus 3 I~GT~t~vGKT~v~~~L~~~l-~~~G~~v~ 31 (475)
T TIGR00313 3 VVGTTSSAGKSTLTAGLCRIL-ARRGYRVA 31 (475)
T ss_pred EeeCCCCCCHHHHHHHHHHHH-HhCCCeEE
Confidence 445778999999999999999 58898865
No 325
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=48.65 E-value=45 Score=32.67 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=26.1
Q ss_pred HHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010555 440 ARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 440 ~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~ 481 (507)
.++++.++.+++|+++++|+.......--+.+.++.+..|..
T Consensus 106 ~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~ 147 (268)
T cd04170 106 EKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRP 147 (268)
T ss_pred HHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCC
Confidence 345556678899999999998765432222333443445654
No 326
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=48.64 E-value=72 Score=27.50 Aligned_cols=54 Identities=9% Similarity=0.022 Sum_probs=35.3
Q ss_pred cCCcEEEEecCCCCC--CHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 449 YGANVVVAVNMFATD--SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 449 fGvpvVVAiN~F~tD--T~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.++|+||++|+-.-- ...+.+.+.+++++.+.. ...++. +=|+|-.+|-+.++.
T Consensus 105 ~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~~v~~l~~~l~~ 160 (163)
T cd01860 105 PNIIIALVGNKADLESKRQVSTEEAQEYADENGLL-FFETSA--KTGENVNELFTEIAK 160 (163)
T ss_pred CCCeEEEEEECccccccCcCCHHHHHHHHHHcCCE-EEEEEC--CCCCCHHHHHHHHHH
Confidence 579999999985432 222455677888888865 554444 346677777666543
No 327
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=48.57 E-value=19 Score=37.68 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=42.7
Q ss_pred HHHHHHHcCCCCcccccccCce----eeech--hhhhhh-c--CCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhc
Q 010555 31 ISEIAQELNLKPNHYDLYGKYK----AKVLL--SVLDEL-E--GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL 101 (507)
Q Consensus 31 I~~iA~~lgl~~~~le~YG~~k----AKi~l--~~l~~~-~--~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~l 101 (507)
+.+|.++.|= ..+-..|... .+++. .-||.+ . .=|.|.+++|.+ |.|.||||++.=++... .+.
T Consensus 10 ~~~~~~~~g~--~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G----~~GsGKTtLaL~~~~~~-~~~ 82 (321)
T TIGR02012 10 LAQIEKQFGK--GSIMRLGEKSVMDVETISTGSLSLDLALGVGGLPRGRIIEIYG----PESSGKTTLALHAIAEA-QKA 82 (321)
T ss_pred HHHHHHHcCc--ceeEECcccccccCceecCCCHHHHHHhcCCCCcCCeEEEEEC----CCCCCHHHHHHHHHHHH-HHc
Confidence 5677777664 3344445322 12332 234443 2 347899999999 56999999988776666 344
Q ss_pred CCcEE
Q 010555 102 DKKVV 106 (507)
Q Consensus 102 gk~a~ 106 (507)
|.+++
T Consensus 83 g~~v~ 87 (321)
T TIGR02012 83 GGTAA 87 (321)
T ss_pred CCcEE
Confidence 55544
No 328
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=48.51 E-value=11 Score=36.96 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=21.0
Q ss_pred EEEeccCCCCCCCCcchhHhhHHHHHhhhcC
Q 010555 72 VVVGGITPTPLGEGKSTTTVGLCQALGAFLD 102 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~~~lg 102 (507)
|+++| |.|.||||++..++..|. .+|
T Consensus 45 vll~G----ppGtGKTtlA~~ia~~l~-~~~ 70 (261)
T TIGR02881 45 MIFKG----NPGTGKTTVARILGKLFK-EMN 70 (261)
T ss_pred EEEEc----CCCCCHHHHHHHHHHHHH-hcC
Confidence 55665 789999999999999883 554
No 329
>PRK04328 hypothetical protein; Provisional
Probab=48.13 E-value=25 Score=34.50 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=28.7
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHH-HHHhhhcCCcE-EEEecC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKV-VTCLRQ 111 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~-qaL~~~lgk~a-~~~lRe 111 (507)
|.|..+||+| |.|.||||.+.=+. .++ +-|.+. ++.+.|
T Consensus 21 p~gs~ili~G----~pGsGKT~l~~~fl~~~~--~~ge~~lyis~ee 61 (249)
T PRK04328 21 PERNVVLLSG----GPGTGKSIFSQQFLWNGL--QMGEPGVYVALEE 61 (249)
T ss_pred cCCcEEEEEc----CCCCCHHHHHHHHHHHHH--hcCCcEEEEEeeC
Confidence 6799999999 88999999987644 455 347665 444544
No 330
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=47.85 E-value=14 Score=35.62 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=21.1
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.+++|+|+|+ -|.||||.+--|++-+
T Consensus 2 ~~~~i~i~G~----~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 2 ESTIHFIGGI----PGVGKTSISGYIARHR 27 (197)
T ss_pred CceEEEEECC----CCCCHHHHHHHHHHhc
Confidence 4679999996 4999999997777655
No 331
>PRK09354 recA recombinase A; Provisional
Probab=47.84 E-value=20 Score=38.07 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=44.9
Q ss_pred CHHHHHHHcCCCCcccccccCc----eeeechh--hhhhh-c--CCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhh
Q 010555 30 HISEIAQELNLKPNHYDLYGKY----KAKVLLS--VLDEL-E--GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF 100 (507)
Q Consensus 30 ~I~~iA~~lgl~~~~le~YG~~----kAKi~l~--~l~~~-~--~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~ 100 (507)
.|.+|-++.|=. .+-..|.. ..+|+.. -||.+ . .=|.|.+++|.+ |.|.||||++.=++... .+
T Consensus 14 ~~~~i~~~~g~~--~~~~~~~~~~~~~~~isTGi~~LD~~LG~GGip~G~IteI~G----~~GsGKTtLal~~~~~~-~~ 86 (349)
T PRK09354 14 ALKQIEKQFGKG--SIMRLGDDAAMDVEVISTGSLALDIALGIGGLPRGRIVEIYG----PESSGKTTLALHAIAEA-QK 86 (349)
T ss_pred HHHHHHHHhCCC--CceEcccccccCCceecCCcHHHHHHhcCCCCcCCeEEEEEC----CCCCCHHHHHHHHHHHH-HH
Confidence 467787777743 33444432 2244432 34442 2 347899999999 78999999998776655 35
Q ss_pred cCCcEEE
Q 010555 101 LDKKVVT 107 (507)
Q Consensus 101 lgk~a~~ 107 (507)
.|.+++-
T Consensus 87 ~G~~~~y 93 (349)
T PRK09354 87 AGGTAAF 93 (349)
T ss_pred cCCcEEE
Confidence 5655543
No 332
>PTZ00369 Ras-like protein; Provisional
Probab=47.82 E-value=78 Score=28.93 Aligned_cols=52 Identities=13% Similarity=0.003 Sum_probs=32.4
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhh
Q 010555 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~--aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
-++|+|++.|+..-..+ -+.+...++++..+.+ +..++ ++-|.|-.++-+.+
T Consensus 109 ~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~S--ak~~~gi~~~~~~l 162 (189)
T PTZ00369 109 DRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIP-FLETS--AKQRVNVDEAFYEL 162 (189)
T ss_pred CCCCEEEEEECcccccccccCHHHHHHHHHHhCCE-EEEee--CCCCCCHHHHHHHH
Confidence 48999999998764221 1233456677777775 44444 45577877754444
No 333
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=47.79 E-value=54 Score=28.57 Aligned_cols=54 Identities=9% Similarity=-0.020 Sum_probs=35.4
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.++|++++.|+..-.... +.+...+++++.+.. +..++. +=|.|-.++-+.+++
T Consensus 105 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~~v~~~~~~l~~ 160 (164)
T cd04175 105 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCA-FLETSA--KAKINVNEIFYDLVR 160 (164)
T ss_pred CCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCE-EEEeeC--CCCCCHHHHHHHHHH
Confidence 579999999997653221 223345677777775 555443 446888888777654
No 334
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=47.59 E-value=74 Score=27.85 Aligned_cols=65 Identities=9% Similarity=0.050 Sum_probs=40.2
Q ss_pred hHHHHHHHHhccCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTKAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
+...++......++|++|+.|+-.-.... ..+..++++++.+....+.++. +=|+|-.++-+.+.
T Consensus 96 ~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa--~~~~~v~~~~~~l~ 162 (165)
T cd01864 96 HWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSA--KESQNVEEAFLLMA 162 (165)
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEEC--CCCCCHHHHHHHHH
Confidence 44444554456789999999986543222 3456678888877643343332 33677777766654
No 335
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=47.59 E-value=42 Score=31.96 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=28.3
Q ss_pred hHHHHHHHHhccCCc-EEEEecCCCC-CCHHHHH----HHHHHHHHcCC
Q 010555 438 NLARHIANTKAYGAN-VVVAVNMFAT-DSKAELN----AVRNAAMAAGA 480 (507)
Q Consensus 438 NL~~HIen~~~fGvp-vVVAiN~F~t-DT~aEi~----~v~~~~~~~G~ 480 (507)
..++|+..++++|+| +||++|+..- +.++-.+ .++++..+.|.
T Consensus 105 ~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~ 153 (195)
T cd01884 105 QTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGF 153 (195)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 456788899999998 7799999864 3232223 35555555553
No 336
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.46 E-value=21 Score=37.61 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=28.0
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
+.+.|-|||.+ ||||||-=|++.| ...|+++..
T Consensus 113 ~~~vI~VTGT~------GKTTTt~ll~~iL-~~~g~~~~~ 145 (460)
T PRK01390 113 DAPFIAITGTN------GKSTTTALIAHIL-REAGRDVQM 145 (460)
T ss_pred CCCEEEEeCCC------cHHHHHHHHHHHH-HhcCCCeEE
Confidence 46899999986 9999999999999 578887643
No 337
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.39 E-value=22 Score=37.22 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=28.2
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
+.+.|-|||.+ ||||||-=|++.| ...|+++..+
T Consensus 108 ~~~~I~VTGT~------GKTTTt~ml~~iL-~~~g~~~~~~ 141 (459)
T PRK02705 108 HIPWVGITGTN------GKTTVTALLAHIL-QAAGLNAPAC 141 (459)
T ss_pred CCCEEEEeCCC------chHHHHHHHHHHH-HHcCCCeEEe
Confidence 46799999985 9999999999999 5889876543
No 338
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=47.06 E-value=50 Score=39.48 Aligned_cols=84 Identities=23% Similarity=0.293 Sum_probs=61.3
Q ss_pred ehHHHhcCCCCCccCCCCCchhccccCHHHHHHHh-----------------hhHHHHHHHHhccCCcEEEEecCCCCCC
Q 010555 402 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC-----------------VNLARHIANTKAYGANVVVAVNMFATDS 464 (507)
Q Consensus 402 vRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~-----------------~NL~~HIen~~~fGvpvVVAiN~F~tDT 464 (507)
||.-|-+ |+..+.|| -.+..||.|.-++-- -|=.+-.+...+-|||||-. ||-
T Consensus 73 I~iAk~~-gaDaIhPG----YGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipg-----t~~ 142 (1149)
T COG1038 73 IRIAKRS-GADAIHPG----YGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPG-----TDG 142 (1149)
T ss_pred HHHHHHc-CCCeecCC----cccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCC-----CCC
Confidence 3444555 77778888 466788988765532 23344555667899999986 444
Q ss_pred HHH-HHHHHHHHHHcCCCeEEEccccccCchhh
Q 010555 465 KAE-LNAVRNAAMAAGAFDAVVCSHHAHGGKGA 496 (507)
Q Consensus 465 ~aE-i~~v~~~~~~~G~~~~~~s~~wa~GGeGa 496 (507)
+.| ++.+.+++++.|.+ +.+--.|.-||.|.
T Consensus 143 ~~~~~ee~~~fa~~~gyP-vmiKA~~GGGGRGM 174 (1149)
T COG1038 143 PIETIEEALEFAEEYGYP-VMIKAAAGGGGRGM 174 (1149)
T ss_pred CcccHHHHHHHHHhcCCc-EEEEEccCCCccce
Confidence 444 77888999999998 88999999999984
No 339
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=47.04 E-value=72 Score=30.55 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=47.7
Q ss_pred HHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccc
Q 010555 432 VEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHA 490 (507)
Q Consensus 432 l~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa 490 (507)
.+..+.++.++++.+++.|..|.+..-....=+++++..+.+.+.++|+..+.+++...
T Consensus 103 ~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G 161 (237)
T PF00682_consen 103 REEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVG 161 (237)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccC
Confidence 45667799999999999999997777666666788998888888999998788887653
No 340
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=46.94 E-value=13 Score=36.46 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=20.2
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
++|+++| |.|.||||.+--|++.+
T Consensus 3 ~liil~G----~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVG----VPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEc----CCCCCHHHHHHHHHHHC
Confidence 5788887 46999999999988776
No 341
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=46.86 E-value=15 Score=38.29 Aligned_cols=38 Identities=29% Similarity=0.282 Sum_probs=30.3
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEec
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lR 110 (507)
.+|-|= |=|==|.|||++++-|++.| ...|.+..+.-|
T Consensus 50 pvIsVG--Ni~vGGtGKTP~v~~L~~~l-~~~g~~~~ilsR 87 (325)
T PRK00652 50 PVIVVG--NITVGGTGKTPVVIALAEQL-QARGLKPGVVSR 87 (325)
T ss_pred CEEEEc--CeeCCCCChHHHHHHHHHHH-HHCCCeEEEECC
Confidence 355553 44567999999999999999 578999888877
No 342
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=46.74 E-value=18 Score=32.46 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=20.6
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.++|+|.|. -|.||||++--|++.+
T Consensus 3 ~~ii~i~G~----~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGG----PGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECC----CCCCHHHHHHHHHHHh
Confidence 458888885 6999999998888766
No 343
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=46.72 E-value=15 Score=37.15 Aligned_cols=42 Identities=31% Similarity=0.304 Sum_probs=24.8
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC---Ccccccc
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG---PTFGIKG 122 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlG---P~FGiKG 122 (507)
.=|.||||+|.-|+-++.+..|++.++.==.++|| -.||+++
T Consensus 11 KGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~ 55 (262)
T COG0455 11 KGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVES 55 (262)
T ss_pred CCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCC
Confidence 46999999999996666344444433332334444 2355544
No 344
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=46.72 E-value=14 Score=34.22 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=19.2
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|++|+++| |-|.||||+.--|+.-+
T Consensus 2 g~~i~l~G----~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMG----PSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEEC----CCCCCHHHHHHHHhccC
Confidence 66788888 78999999887774433
No 345
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=46.67 E-value=53 Score=28.47 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=33.6
Q ss_pred hccCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 447 KAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 447 ~~fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
...++|++|+.|+..--...+ .+.+.+++++.+.. +..++ ++=|+|-.++=+.+.
T Consensus 102 ~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~~~~~~~ 158 (161)
T cd04113 102 ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLL-FLETS--ALTGENVEEAFLKCA 158 (161)
T ss_pred CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCE-EEEEE--CCCCCCHHHHHHHHH
Confidence 346899999999975422222 34466777888864 44443 345667666655443
No 346
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=46.66 E-value=9.4 Score=33.50 Aligned_cols=24 Identities=46% Similarity=0.606 Sum_probs=18.9
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+|+++| |.|.||||++.-|.+.++
T Consensus 1 li~l~G----~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 1 IIVVMG----VSGSGKSTVGKALAERLG 24 (150)
T ss_pred CEEEEc----CCCCCHHHHHHHHHhhcC
Confidence 466666 469999999999988763
No 347
>PRK08939 primosomal protein DnaI; Reviewed
Probab=46.52 E-value=29 Score=35.64 Aligned_cols=71 Identities=15% Similarity=0.086 Sum_probs=43.3
Q ss_pred HHHHHHHcCCCC----cccccccCc-----eee-echhhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhh
Q 010555 31 ISEIAQELNLKP----NHYDLYGKY-----KAK-VLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF 100 (507)
Q Consensus 31 I~~iA~~lgl~~----~~le~YG~~-----kAK-i~l~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~ 100 (507)
+...-+..+++. ..++-|... .|. .-.+++++....+.+|=++++| |.|.|||..+.+++..|. .
T Consensus 108 ~~~~i~~a~~p~~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G----~~G~GKThLa~Aia~~l~-~ 182 (306)
T PRK08939 108 IKKRIQSIYMPKDLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYG----DFGVGKSYLLAAIANELA-K 182 (306)
T ss_pred HHHHHHHcCCCHhHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEEC----CCCCCHHHHHHHHHHHHH-H
Confidence 455556777875 233433321 111 1134444443333566777777 569999999999999995 6
Q ss_pred cCCcEE
Q 010555 101 LDKKVV 106 (507)
Q Consensus 101 lgk~a~ 106 (507)
.|+++.
T Consensus 183 ~g~~v~ 188 (306)
T PRK08939 183 KGVSST 188 (306)
T ss_pred cCCCEE
Confidence 787754
No 348
>PRK07952 DNA replication protein DnaC; Validated
Probab=46.39 E-value=17 Score=36.44 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=24.8
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+-++++| |.|.|||+++.+++..|. +.|++++
T Consensus 100 ~~~~l~G----~~GtGKThLa~aia~~l~-~~g~~v~ 131 (244)
T PRK07952 100 ASFIFSG----KPGTGKNHLAAAICNELL-LRGKSVL 131 (244)
T ss_pred ceEEEEC----CCCCCHHHHHHHHHHHHH-hcCCeEE
Confidence 3566665 569999999999999994 6676654
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=46.36 E-value=13 Score=43.80 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=29.7
Q ss_pred hhhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHH
Q 010555 57 LSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 57 l~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~q 95 (507)
..+++++....+.|++|.+| |+|-||||...-+..
T Consensus 25 ~rL~~~L~~~~~~RL~li~A----PAGfGKttl~aq~~~ 59 (894)
T COG2909 25 PRLLDRLRRANDYRLILISA----PAGFGKTTLLAQWRE 59 (894)
T ss_pred HHHHHHHhcCCCceEEEEeC----CCCCcHHHHHHHHHH
Confidence 45677887778999999987 999999999887755
No 350
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.34 E-value=20 Score=38.39 Aligned_cols=31 Identities=35% Similarity=0.296 Sum_probs=26.5
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
.++|-|||.+ ||||||-=|.+.| ...|+++.
T Consensus 115 ~~~IaITGTn------GKTTTt~ll~~iL-~~~g~~~~ 145 (468)
T PRK04690 115 PGTVCVTGTK------GKSTTTALLAHLL-RAAGHRTA 145 (468)
T ss_pred CCEEEEeCCC------CHHHHHHHHHHHH-HhcCCcEE
Confidence 4799999986 9999999999999 57887654
No 351
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=46.32 E-value=24 Score=34.35 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=32.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcE-EEEecCCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV-VTCLRQPS 113 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a-~~~lRePS 113 (507)
|.|+.+||+| +.|.|||+.+.-..-... .-|.+. .++++|+.
T Consensus 21 p~g~~~lI~G----~pGsGKT~f~~qfl~~~~-~~ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITG----PPGTGKTIFALQFLYEGA-REGEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEc----CCCCcHHHHHHHHHHHHH-hcCCcEEEEEecCCH
Confidence 7899999999 579999999987666663 447765 46677753
No 352
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=46.28 E-value=16 Score=38.42 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=28.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
..++-|||+| |-|.||||+.-.|.+.+. . .. -++++-+|
T Consensus 160 ~~~~nilI~G----~tGSGKTTll~aLl~~i~-~-~~-rivtiEd~ 198 (344)
T PRK13851 160 VGRLTMLLCG----PTGSGKTTMSKTLISAIP-P-QE-RLITIEDT 198 (344)
T ss_pred HcCCeEEEEC----CCCccHHHHHHHHHcccC-C-CC-CEEEECCC
Confidence 3578899999 559999999999988874 2 22 35555554
No 353
>PRK13947 shikimate kinase; Provisional
Probab=46.23 E-value=11 Score=33.71 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=18.8
Q ss_pred EEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 72 VVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|+++|+ .|.||||++.-|++.|+
T Consensus 4 I~l~G~----~GsGKst~a~~La~~lg 26 (171)
T PRK13947 4 IVLIGF----MGTGKTTVGKRVATTLS 26 (171)
T ss_pred EEEEcC----CCCCHHHHHHHHHHHhC
Confidence 666664 69999999999988884
No 354
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=46.22 E-value=18 Score=37.76 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=26.8
Q ss_pred hhhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 57 LSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 57 l~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+..+.++...+.--.|+++|. .|.||||++.-|+..|
T Consensus 80 y~~~~~i~~~~~p~iIlI~G~----sgsGKStlA~~La~~l 116 (301)
T PRK04220 80 YLLWRRIRKSKEPIIILIGGA----SGVGTSTIAFELASRL 116 (301)
T ss_pred HHHHHHHhcCCCCEEEEEECC----CCCCHHHHHHHHHHHh
Confidence 455555554444568888885 5999999888888766
No 355
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=46.17 E-value=1e+02 Score=27.23 Aligned_cols=64 Identities=8% Similarity=0.073 Sum_probs=42.2
Q ss_pred hhHHHHHHHHhccC-CcEEEEec-CCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHH
Q 010555 437 VNLARHIANTKAYG-ANVVVAVN-MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEP 500 (507)
Q Consensus 437 ~NL~~HIen~~~fG-vpvVVAiN-~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA 500 (507)
.+..+-|+.+++.| +++.+-+= -++.++.+++..+.+++++.|+..+.+.......|....+..
T Consensus 136 ~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~~~~~~ 201 (216)
T smart00729 136 EDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred HHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCChHHHhc
Confidence 35555566677777 55544332 245689999999999999999975555554445665554444
No 356
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=46.05 E-value=87 Score=26.78 Aligned_cols=54 Identities=20% Similarity=0.076 Sum_probs=35.0
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~--aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.+.|+|++.|+-....+ ...+..++++++.+.. +..++ ++-|+|-.++-+.+++
T Consensus 109 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~ 164 (168)
T cd04119 109 ENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFK-YFETS--ACTGEGVNEMFQTLFS 164 (168)
T ss_pred CCceEEEEEEchhcccccccCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHH
Confidence 57999999999765421 1234455677888875 43333 3458888887776654
No 357
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=45.73 E-value=23 Score=35.98 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=25.5
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRe 111 (507)
.|-|++- -|.||||+..-|...| .+.| + ++.+--
T Consensus 3 ~i~i~G~----~gSGKTTLi~~Li~~L-~~~G-~-V~~IKh 36 (274)
T PRK14493 3 VLSIVGY----KATGKTTLVERLVDRL-SGRG-R-VGTVKH 36 (274)
T ss_pred EEEEECC----CCCCHHHHHHHHHHHH-HhCC-C-EEEEEE
Confidence 4555554 3999999999999999 4778 4 555554
No 358
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=45.69 E-value=31 Score=36.91 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=31.2
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.--+||+.|+| |.|||||--=|+.-| ..-|++.+++
T Consensus 138 ~p~Vil~vGVN----G~GKTTTIaKLA~~l-~~~g~~Vlla 173 (340)
T COG0552 138 KPFVILFVGVN----GVGKTTTIAKLAKYL-KQQGKSVLLA 173 (340)
T ss_pred CcEEEEEEecC----CCchHhHHHHHHHHH-HHCCCeEEEE
Confidence 35699999998 899999988899999 5889998875
No 359
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=45.56 E-value=24 Score=33.36 Aligned_cols=42 Identities=29% Similarity=0.547 Sum_probs=29.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHH-HHHhhhcCCcE-EEEecCCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKV-VTCLRQPS 113 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~-qaL~~~lgk~a-~~~lRePS 113 (507)
|.|..+||+| |.|.|||+.+.-+. .++ ...|.++ .+++-||.
T Consensus 17 p~gs~~li~G----~~GsGKT~l~~q~l~~~~-~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 17 PKGSVVLISG----PPGSGKTTLALQFLYNGL-KNFGEKVLYVSFEEPP 60 (226)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHHH-HHHT--EEEEESSS-H
T ss_pred CCCcEEEEEe----CCCCCcHHHHHHHHHHhh-hhcCCcEEEEEecCCH
Confidence 6799999998 67999999998855 455 2337776 56667765
No 360
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=45.51 E-value=20 Score=35.18 Aligned_cols=35 Identities=31% Similarity=0.340 Sum_probs=26.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
+.|.+++.| +-|-||||.++|++... ...|.++.+
T Consensus 21 ~~g~v~v~~-----g~GkGKtt~a~g~a~ra-~g~G~~V~i 55 (191)
T PRK05986 21 EKGLLIVHT-----GNGKGKSTAAFGMALRA-VGHGKKVGV 55 (191)
T ss_pred cCCeEEEEC-----CCCCChHHHHHHHHHHH-HHCCCeEEE
Confidence 457777775 57999999999998766 356877554
No 361
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=45.49 E-value=16 Score=37.81 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.4
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.++|+|+| |.|.||||+++-|++.++
T Consensus 4 ~~~i~i~G----ptgsGKt~la~~la~~~~ 29 (307)
T PRK00091 4 PKVIVIVG----PTASGKTALAIELAKRLN 29 (307)
T ss_pred ceEEEEEC----CCCcCHHHHHHHHHHhCC
Confidence 47888888 569999999999999884
No 362
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=45.42 E-value=94 Score=27.83 Aligned_cols=94 Identities=18% Similarity=0.340 Sum_probs=50.3
Q ss_pred CeEEeeccccccc---ccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHH
Q 010555 364 GFVVTEAGFGADI---GAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLA 440 (507)
Q Consensus 364 dyVVTEAGFGaDl---GaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~ 440 (507)
++.|+--|++-+. ..+++- -.....+||.||+-. |......+ ..++...+ |++
T Consensus 31 ~~~v~n~g~~G~~~~~~l~~l~---~~~~~~~~d~v~i~~---------G~ND~~~~---------~~~~~~~~---~~~ 86 (183)
T cd04501 31 GKEVINRGINGDTTSQMLVRFY---EDVIALKPAVVIIMG---------GTNDIIVN---------TSLEMIKD---NIR 86 (183)
T ss_pred CCeEEecCcCCccHHHHHHHHH---HHHHhcCCCEEEEEe---------ccCccccC---------CCHHHHHH---HHH
Confidence 5566666776543 112221 112456899876543 43332211 13444544 455
Q ss_pred HHHHHHhccCCcEEEEe----cCCCC-----CCHHHHH----HHHHHHHHcCCC
Q 010555 441 RHIANTKAYGANVVVAV----NMFAT-----DSKAELN----AVRNAAMAAGAF 481 (507)
Q Consensus 441 ~HIen~~~fGvpvVVAi----N~F~t-----DT~aEi~----~v~~~~~~~G~~ 481 (507)
+=|+-+++.|.++|+.. +.... .+.++++ .++++|++.++.
T Consensus 87 ~li~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~ 140 (183)
T cd04501 87 SMVELAEANGIKVILASPLPVDDYPWKPQWLRPANKLKSLNRWLKDYARENGLL 140 (183)
T ss_pred HHHHHHHHCCCcEEEEeCCCcCccccchhhcchHHHHHHHHHHHHHHHHHcCCC
Confidence 55666678898888764 22221 2234444 478889988886
No 363
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=45.26 E-value=48 Score=33.29 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=20.6
Q ss_pred HHHHHHHhccCCcEEEEecCCCCC
Q 010555 440 ARHIANTKAYGANVVVAVNMFATD 463 (507)
Q Consensus 440 ~~HIen~~~fGvpvVVAiN~F~tD 463 (507)
.++++.++++|+|++|+||+....
T Consensus 106 ~~~~~~~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 106 ETVWRQADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCC
Confidence 577888889999999999998754
No 364
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=45.18 E-value=86 Score=27.66 Aligned_cols=53 Identities=8% Similarity=-0.096 Sum_probs=31.4
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
-++|++|+.|+..-..+. ..+...++++..+..-+.+|..+ |.|-.++-+.++
T Consensus 107 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~~~~~i~ 161 (167)
T cd01867 107 EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKA---NINVEEAFFTLA 161 (167)
T ss_pred CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC---CCCHHHHHHHHH
Confidence 479999999987543211 33445677777777534444444 456555544443
No 365
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=45.14 E-value=21 Score=32.41 Aligned_cols=27 Identities=37% Similarity=0.650 Sum_probs=23.3
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|.+++++| |.|.||||.+.-|+-++
T Consensus 30 ~~g~l~~i~g----~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 30 PRGELTLIAG----PPGSGKTTLALQLAAAL 56 (193)
T ss_dssp -TTSEEEEEE----CSTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEEe----CCCCCHHHHHHHHHHHH
Confidence 4588999998 67999999999998888
No 366
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=44.96 E-value=43 Score=35.42 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=19.3
Q ss_pred HHHHHHHHhccCCc-EEEEecCCCCC
Q 010555 439 LARHIANTKAYGAN-VVVAVNMFATD 463 (507)
Q Consensus 439 L~~HIen~~~fGvp-vVVAiN~F~tD 463 (507)
-.+|+..++.+|+| +||++|+....
T Consensus 121 t~~~~~~~~~~~~~~iivviNK~D~~ 146 (406)
T TIGR02034 121 TRRHSYIASLLGIRHVVLAVNKMDLV 146 (406)
T ss_pred cHHHHHHHHHcCCCcEEEEEEecccc
Confidence 34678888888886 78899997653
No 367
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=44.63 E-value=30 Score=32.05 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=24.2
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRe 111 (507)
.++||| .+|.||||+-.-|.+ . ..-|.+..+..-|
T Consensus 2 v~ii~G----fLGsGKTTli~~ll~-~-~~~~~~~~vI~ne 36 (178)
T PF02492_consen 2 VIIITG----FLGSGKTTLINHLLK-R-NRQGERVAVIVNE 36 (178)
T ss_dssp EEEEEE----STTSSHHHHHHHHHH-H-HTTTS-EEEEECS
T ss_pred EEEEEc----CCCCCHHHHHHHHHH-H-hcCCceeEEEEcc
Confidence 456776 489999999888877 3 3567776666554
No 368
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.60 E-value=26 Score=36.69 Aligned_cols=31 Identities=29% Similarity=0.171 Sum_probs=26.2
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
.+.|-|||.+ ||||||-=|++-| ...|+++.
T Consensus 105 ~~~I~VTGTn------GKTTTt~ll~~iL-~~~g~~~~ 135 (438)
T PRK03806 105 APIVAITGSN------GKSTVTTLVGEMA-KAAGWKVG 135 (438)
T ss_pred CCEEEEeCCC------CHHHHHHHHHHHH-HHcCCCEE
Confidence 4689999986 9999999999999 47888754
No 369
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=44.49 E-value=95 Score=34.50 Aligned_cols=181 Identities=15% Similarity=0.198 Sum_probs=88.2
Q ss_pred CCceeecccc---chhhHHHHhhhccCcccceeecCceeEEeccCcccccccCchHHHHHHHHHhcCCCCeE---Eee--
Q 010555 298 GDPITADDLG---VGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFV---VTE-- 369 (507)
Q Consensus 298 g~PVta~DL~---~~GAmt~LLkdAikPNLvQTlEgtPa~VHgGPFANIAhG~nSviAtk~ALklag~~dyV---VTE-- 369 (507)
.+++|.+=++ .-|||.+.+ -++|+=.+||| ++||.+-.-..+.-..-.+-..+ .||
T Consensus 58 ~~~~~inP~k~CqplGA~~a~~----------Gi~~~~plvHG------sqGC~~y~r~~~~rhf~ep~~~~sT~m~E~~ 121 (515)
T TIGR01286 58 REALTVNPAKACQPLGAVLAAL----------GFEGTMPFVHG------SQGCVAYFRSHFNRHFKEPVSAVSSSMTEDA 121 (515)
T ss_pred ccceecCCcccchHHHHHHHHH----------hhcCCeeeccC------chhHHHHHHHHHhccCCCCcccccccCCCCc
Confidence 3444444443 237777765 47899999999 68999754332221111111111 112
Q ss_pred cccccccccccccc-cccccCCCCcceEEEEeeehH-------------HHhcCCCCCccCCCCCch----hccccCHHH
Q 010555 370 AGFGADIGAEKFMN-IKCRYSGLTPQCAVIVATIRA-------------LKMHGGGPQVVAGKPLDH----AYLNENVAL 431 (507)
Q Consensus 370 AGFGaDlGaEKF~d-IKCr~sgl~PdavVlVaTvRA-------------LK~HGG~~~~~~g~pL~~----~~~~enl~a 431 (507)
+=||.+ +|..+ |+==..-.+|++++|++|.-+ .+-.++.|. +.|++. .+.......
T Consensus 122 aVfGG~---~~L~e~I~~~~~~y~P~~I~V~tTC~~evIGDDi~a~i~~~~~~~~~p~---~~pVi~v~TpgF~Gs~~~G 195 (515)
T TIGR01286 122 AVFGGL---KNMVDGLQNCYALYKPKMIAVSTTCMAEVIGDDLNAFIGNAKKEGFIPD---DFPVPFAHTPSFVGSHITG 195 (515)
T ss_pred eeeCcH---HHHHHHHHHHHHhcCCCEEEEeCCcHHHHhhccHHHHHHHHHHhcCCCC---CCceEEeeCCCCcccHHHH
Confidence 335533 44332 122233357999999998743 233333332 223332 222222222
Q ss_pred HHHHhhhHHHHHHHHh-----ccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcc--------------ccccC
Q 010555 432 VEAGCVNLARHIANTK-----AYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCS--------------HHAHG 492 (507)
Q Consensus 432 l~~G~~NL~~HIen~~-----~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~--------------~wa~G 492 (507)
-...+.=+.+|+..-+ .-.-+-|-.|.-|. .+...++.|+++.++.|+.-.++++ .| .|
T Consensus 196 yd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~-~~~gd~~eikrlL~~~Gi~~~~l~d~s~~~d~p~~g~~~~~-~g 273 (515)
T TIGR01286 196 YDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFE-TYIGNFREIKRILSLMGVGYTLLSDPEEVLDTPADGEFRMY-AG 273 (515)
T ss_pred HHHHHHHHHHHHhhcccccccCCCCCeEEEECCCC-CCchhHHHHHHHHHHcCCCeEEccCccccccCCCCCCcccc-CC
Confidence 2233333333332111 00001122232332 2377888999999999997333332 33 47
Q ss_pred chhhHHHHHh
Q 010555 493 GKGAFKEPVR 502 (507)
Q Consensus 493 GeGa~~LA~~ 502 (507)
|..-.++.+.
T Consensus 274 gttleei~~a 283 (515)
T TIGR01286 274 GTTLEEMKDA 283 (515)
T ss_pred CCCHHHHHHh
Confidence 7777777654
No 370
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=44.45 E-value=47 Score=32.92 Aligned_cols=120 Identities=17% Similarity=0.086 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCCCCeEEeeccccccccccccccc-ccccCCC---CcceEEEEeee--hHHHhcCCCCCccCCCCCchhc
Q 010555 351 VADKIALKLVGPGGFVVTEAGFGADIGAEKFMNI-KCRYSGL---TPQCAVIVATI--RALKMHGGGPQVVAGKPLDHAY 424 (507)
Q Consensus 351 iAtk~ALklag~~dyVVTEAGFGaDlGaEKF~dI-KCr~sgl---~PdavVlVaTv--RALK~HGG~~~~~~g~pL~~~~ 424 (507)
|+-+|-.||.|.. |.+-+.-...++..+=|+=| -|+.+.. .|.++-+|+++ ...+|.+...... -
T Consensus 50 i~lkinaKlGG~n-~~~~~~~~~~~~~~~miIGidv~h~~~~~~~~~sv~g~~~s~~~~~~~~~~~~~~~~--------~ 120 (302)
T PF02171_consen 50 IALKINAKLGGIN-PWLLDSPPSIDLKNTMIIGIDVSHPSPGSDKNPSVVGFVASFDSDGSKYFSSVRFQD--------S 120 (302)
T ss_dssp HHHHHHHHTTTBS-EEECSCSSGSSESEEEEEEEEEEEESSTCTCSCEEEEEEEEESTTTCEEEEEEEEEC--------T
T ss_pred HHHHHHHhCCCee-eeecccccccccCceEEEEEEEEecCcccCCcceeeEEEEeccCccccccceeEEec--------c
Confidence 5677778888754 56666655333311112111 2444444 49999999998 7777877654432 3
Q ss_pred cccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecC-------CCCCCHHHHHHHHHHHHHcC
Q 010555 425 LNENVALVEAGCVNLARHIANTKAYGANVVVAVNM-------FATDSKAELNAVRNAAMAAG 479 (507)
Q Consensus 425 ~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~-------F~tDT~aEi~~v~~~~~~~G 479 (507)
.+|.++.|+.-+.+..+.-++..+...|-=|.|=| |..=-++|++.+++.|++.+
T Consensus 121 ~~e~~~~l~~~~~~~L~~~~~~~~~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~ 182 (302)
T PF02171_consen 121 GQEIIDNLEEIIKEALKEFKKNNGKWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELG 182 (302)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTTT-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhcchhhHHHHHHHHHHHHcCCCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcc
Confidence 46777777776666666555554432454444433 22223679999999998776
No 371
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=44.44 E-value=18 Score=30.48 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=19.8
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+++.++|+| |.|.||||+..=+.+.+.
T Consensus 3 ~~~~~~i~G----~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 3 SQRILVISG----PPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ----EEEEE-----TTSSHHHHHHHHHHHHH
T ss_pred CCcccEEEc----CCCCCHHHHHHHHHHHhH
Confidence 467888988 679999999999988884
No 372
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.40 E-value=22 Score=38.07 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=27.0
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
.++|-|||.+ ||||||-=|++.| ...|+++.
T Consensus 121 ~~vIaVTGTn------GKTTTt~ml~~iL-~~~g~~~~ 151 (473)
T PRK00141 121 RTWLAVTGTN------GKTTTTAMLAAMM-QEGGFAAQ 151 (473)
T ss_pred CCEEEEeCCC------cHHHHHHHHHHHH-HhcCCcEE
Confidence 3799999986 9999999999999 58898865
No 373
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=44.34 E-value=86 Score=30.64 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=44.8
Q ss_pred ccccCHHHHHHHhhhHHHHHHHHhccCCcEEEE-ecCCCCCCHHH-----HHHHHHH---HHHcCCCeEEEcccccc
Q 010555 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVA-VNMFATDSKAE-----LNAVRNA---AMAAGAFDAVVCSHHAH 491 (507)
Q Consensus 424 ~~~enl~al~~G~~NL~~HIen~~~fGvpvVVA-iN~F~tDT~aE-----i~~v~~~---~~~~G~~~~~~s~~wa~ 491 (507)
+..++.+.-++.+..+++.|+-++.+|.+.||. ......++.++ ++.++++ +++.|+. +.+-+++..
T Consensus 72 ~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~-l~lEn~~~~ 147 (279)
T cd00019 72 LASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVV-IALETMAGQ 147 (279)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCE-EEEeCCCCC
Confidence 345566778999999999999999999998776 22222222222 2344444 4567886 777777654
No 374
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=44.25 E-value=18 Score=40.14 Aligned_cols=28 Identities=36% Similarity=0.603 Sum_probs=23.3
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.-.+|+|.|.+ |.||||++-.|++.|+
T Consensus 253 k~p~vil~~G~~----G~GKSt~a~~LA~~lg 280 (475)
T PRK12337 253 PRPLHVLIGGVS----GVGKSVLASALAYRLG 280 (475)
T ss_pred CCCeEEEEECCC----CCCHHHHHHHHHHHcC
Confidence 346799999864 9999999999998884
No 375
>PRK08118 topology modulation protein; Reviewed
Probab=44.22 E-value=12 Score=34.66 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=18.4
Q ss_pred EEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 72 VVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|+|.| |-|.||||.+.-|++-++
T Consensus 4 I~I~G----~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 4 IILIG----SGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEC----CCCCCHHHHHHHHHHHhC
Confidence 66666 569999999888887773
No 376
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=44.20 E-value=32 Score=35.82 Aligned_cols=67 Identities=21% Similarity=0.142 Sum_probs=46.0
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhh
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIH 147 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~H 147 (507)
+=.+|.|=.| |==|.|||-+++-|++.| ...|++..+.-| |-+|-..| -.-+|-|-. +-+-+||=-
T Consensus 34 ~vpVIsVGNl--tvGGTGKTP~v~~L~~~L-~~~G~~~~IlSR--------GYg~~~~~-~~~~v~~~~--~~~~~GDEp 99 (326)
T PF02606_consen 34 PVPVISVGNL--TVGGTGKTPLVIWLARLL-QARGYRPAILSR--------GYGRKSKG-EPILVSDGS--DAEEVGDEP 99 (326)
T ss_pred CCcEEEEccc--ccCCCCchHHHHHHHHHH-HhcCCceEEEcC--------CCCCCCCC-CeEEEeCCC--ChhhhcCHH
Confidence 3446666654 667999999999999999 578999999888 34333332 233444444 777788844
Q ss_pred H
Q 010555 148 A 148 (507)
Q Consensus 148 A 148 (507)
.
T Consensus 100 ~ 100 (326)
T PF02606_consen 100 L 100 (326)
T ss_pred H
Confidence 3
No 377
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=44.15 E-value=10 Score=36.83 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=13.6
Q ss_pred CCCCCcchhHhhHHHHH
Q 010555 81 PLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL 97 (507)
+-|.||||++..|+-=+
T Consensus 7 tiGCGKTTva~aL~~LF 23 (168)
T PF08303_consen 7 TIGCGKTTVALALSNLF 23 (168)
T ss_pred CCCcCHHHHHHHHHHHc
Confidence 35999999998886555
No 378
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=43.86 E-value=18 Score=40.87 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=27.2
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.+++|.| |.|.|||||.+.+...+ -..|++..+|
T Consensus 174 ~~~lI~G----pPGTGKT~t~~~ii~~~-~~~g~~VLv~ 207 (637)
T TIGR00376 174 DLFLIHG----PPGTGKTRTLVELIRQL-VKRGLRVLVT 207 (637)
T ss_pred CeEEEEc----CCCCCHHHHHHHHHHHH-HHcCCCEEEE
Confidence 5788887 78999999999998877 3668876555
No 379
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=43.80 E-value=2.1e+02 Score=31.44 Aligned_cols=156 Identities=13% Similarity=0.155 Sum_probs=79.9
Q ss_pred eecCceeEEeccCcccccccCchHHHHHHHHHhcCCCC---eEEe-----eccccccccccccccc-ccccCCCCcceEE
Q 010555 327 TLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGG---FVVT-----EAGFGADIGAEKFMNI-KCRYSGLTPQCAV 397 (507)
Q Consensus 327 TlEgtPa~VHgGPFANIAhG~nSviAtk~ALklag~~d---yVVT-----EAGFGaDlGaEKF~dI-KCr~sgl~PdavV 397 (507)
.+++.=+++|| ..||...-....-+.- ..+ +..| +..||++ ||+.+- +-=..-.+|++++
T Consensus 22 ~i~~~~~i~Hg------p~GC~~~~~~~~~~~~--~~~~~p~~tt~l~e~dvv~G~~---~~L~~aI~~~~~~~~P~~I~ 90 (511)
T TIGR01278 22 SMKNVHAVMHA------PQGDDYVNVMFSMLER--TPNFPPVTTSVVDRRDLARGSQ---TRLVDTVRRVDDRFKPDLIV 90 (511)
T ss_pred hcCCcEEEeeC------CCCccchHHhhhhhhc--CCCCCceeeccCCccceecchH---HHHHHHHHHHHHhcCCCEEE
Confidence 45677789999 4689886432222111 112 2344 5677764 665542 1111235899999
Q ss_pred EEeee-------------hHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHH-hc----cCCcEEEEecC
Q 010555 398 IVATI-------------RALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANT-KA----YGANVVVAVNM 459 (507)
Q Consensus 398 lVaTv-------------RALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~-~~----fGvpvVVAiN~ 459 (507)
|++|. +-++.. |.+.+...- +.|.......-..-+..|.++...= .+ -.-|-|-.|--
T Consensus 91 V~sTC~selIGdDi~~~~~~~~~~-~~pvi~v~t---~gf~g~~~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~ 166 (511)
T TIGR01278 91 VTPSCTSSLLQEDLGNLAAAAGLD-KSKVIVADV---NAYRRKENQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGP 166 (511)
T ss_pred EeCCChHHHhccCHHHHHHHhccC-CCcEEEecC---CCcccchhHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeC
Confidence 99998 222222 332221110 2233322344455555555544321 11 11233444443
Q ss_pred CCCC--CHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHH
Q 010555 460 FATD--SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPV 501 (507)
Q Consensus 460 F~tD--T~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~ 501 (507)
++.| +.++++.|+++.++.|+. +.. .|. ||..-.||.+
T Consensus 167 ~~l~~~~~~D~~elkrlL~~lGi~-vn~--v~p-~g~s~~dl~~ 206 (511)
T TIGR01278 167 ASLGFHHRHDLIELRRLLKTLGIE-VNV--VAP-WGASIADLAR 206 (511)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCe-EEE--EeC-CCCCHHHHHh
Confidence 3333 678888999999999996 432 233 4555555553
No 380
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=43.70 E-value=72 Score=28.13 Aligned_cols=33 Identities=9% Similarity=-0.030 Sum_probs=26.9
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010555 449 YGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~ 481 (507)
.+.|+++++|+..--.+++++...+++++.+..
T Consensus 41 ~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ 73 (141)
T cd01857 41 PRKKNILLLNKADLLTEEQRKAWAEYFKKEGIV 73 (141)
T ss_pred CCCcEEEEEechhcCCHHHHHHHHHHHHhcCCe
Confidence 478999999998776677887777888877864
No 381
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=43.55 E-value=18 Score=34.54 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=20.6
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
...++++| |.|.||||+..-+...+
T Consensus 43 ~~~~~l~G----~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 43 EGFILITG----EVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCEEEEEc----CCCCCHHHHHHHHHHhc
Confidence 45778887 67999999999887766
No 382
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.44 E-value=27 Score=36.36 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=26.4
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
.+.|-|||.+ ||||||-=|++.| ...|+.+.
T Consensus 108 ~~~I~VTGT~------GKTTTt~ll~~iL-~~~g~~~~ 138 (447)
T PRK02472 108 APIIGITGSN------GKTTTTTLIGEML-KAGGQHAL 138 (447)
T ss_pred CCEEEEeCCC------chHHHHHHHHHHH-HHCCCCeE
Confidence 5689999986 9999999999999 57887764
No 383
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=43.44 E-value=12 Score=32.14 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=17.0
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+|++.| |.|.||||.+--|.+.+
T Consensus 1 lii~~G----~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCG----PPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEE----STTSSHHHHHHHHHHHS
T ss_pred CEEEEC----CCCCCHHHHHHHHHHHC
Confidence 456666 57999999987776555
No 384
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=43.33 E-value=41 Score=38.60 Aligned_cols=125 Identities=22% Similarity=0.273 Sum_probs=77.3
Q ss_pred cccccCchHHHHHHHHHhcCCCCeEEeeccc----------cccccccc--cccc-------ccccCCCC-cceEEEEee
Q 010555 342 NIAHGNSSIVADKIALKLVGPGGFVVTEAGF----------GADIGAEK--FMNI-------KCRYSGLT-PQCAVIVAT 401 (507)
Q Consensus 342 NIAhG~nSviAtk~ALklag~~dyVVTEAGF----------GaDlGaEK--F~dI-------KCr~sgl~-PdavVlVaT 401 (507)
..-||-.|++- ||+-+ ..+-+|+|= ..+=| ++ |+|- +.|.-|-. -|-||||..
T Consensus 161 HVDHGKTTLLD---~lRks---~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVA 233 (683)
T KOG1145|consen 161 HVDHGKTTLLD---ALRKS---SVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVLVVA 233 (683)
T ss_pred cccCChhhHHH---HHhhC---ceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEEEEE
Confidence 46899888872 34444 444555541 12223 43 6664 67777766 788888875
Q ss_pred ehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHH-------
Q 010555 402 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNA------- 474 (507)
Q Consensus 402 vRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~------- 474 (507)
.- -|+- ..-+|+ |..+|.-+||+|||||+-.-- .+-++.+++.
T Consensus 234 ad-----DGVm-------------pQT~Ea-----------IkhAk~A~VpiVvAinKiDkp-~a~pekv~~eL~~~gi~ 283 (683)
T KOG1145|consen 234 AD-----DGVM-------------PQTLEA-----------IKHAKSANVPIVVAINKIDKP-GANPEKVKRELLSQGIV 283 (683)
T ss_pred cc-----CCcc-------------HhHHHH-----------HHHHHhcCCCEEEEEeccCCC-CCCHHHHHHHHHHcCcc
Confidence 22 1221 112222 666778899999999997533 5556666554
Q ss_pred HHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 475 AMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 475 ~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
|++.|.. +-+-..=+.=|++--+|+++++
T Consensus 284 ~E~~GGd-VQvipiSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 284 VEDLGGD-VQVIPISALTGENLDLLEEAIL 312 (683)
T ss_pred HHHcCCc-eeEEEeecccCCChHHHHHHHH
Confidence 4455553 5555566788899999998876
No 385
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=43.23 E-value=1.1e+02 Score=27.46 Aligned_cols=53 Identities=15% Similarity=0.079 Sum_probs=34.1
Q ss_pred cCCcEEEEecCCCCCCHH------HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhh
Q 010555 449 YGANVVVAVNMFATDSKA------ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~a------Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
-++|+|++.|+..-..+. ..+...++|++.+...+..++ +.=|+|-.++-+.+
T Consensus 104 ~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S--a~~~~~v~~~f~~l 162 (187)
T cd04132 104 PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECS--AKTMENVEEVFDTA 162 (187)
T ss_pred CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEcc--CCCCCCHHHHHHHH
Confidence 479999999997543211 134567788888884355555 45567776654444
No 386
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=43.22 E-value=76 Score=27.56 Aligned_cols=54 Identities=22% Similarity=0.201 Sum_probs=36.0
Q ss_pred cCCcEEEEecCCCCCCHHHHHHH--HHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 449 YGANVVVAVNMFATDSKAELNAV--RNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aEi~~v--~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.+.|+||++|+..-.+..++... ...+...+.. ++.+ =+.-|.|-.+|.+.+..
T Consensus 119 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 119 TAKPVIYVLNKIDLDDAEELEEELVRELALEEGAE-VVPI--SAKTEEGLDELIRAIYE 174 (176)
T ss_pred hhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCC-EEEE--ehhhhcCHHHHHHHHHh
Confidence 58999999999887766666554 3333334443 3433 35677888888887754
No 387
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=43.19 E-value=91 Score=26.49 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=34.4
Q ss_pred HHHhccCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 444 ANTKAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 444 en~~~fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
+.....++|++|+.|+..-..+. ..+.+.+++++.+..-+.+| +.=|+|-.++-+.+.
T Consensus 99 ~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~gi~~~~~~l~ 158 (162)
T cd04123 99 KQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETS---AKTGKGIEELFLSLA 158 (162)
T ss_pred HHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEe---CCCCCCHHHHHHHHH
Confidence 33334489999999997754322 12445666777787533333 444566666665544
No 388
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=42.96 E-value=33 Score=35.02 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=28.4
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhc-CCcEEEEecCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTCLRQP 112 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~l-gk~a~~~lReP 112 (507)
.++-|||+| |-|+||||+.-.|.+.+. .. ....++++=+|
T Consensus 131 ~~~~ilI~G----~tGSGKTTll~al~~~i~-~~~~~~ri~tiEd~ 171 (299)
T TIGR02782 131 ARKNILVVG----GTGSGKTTLANALLAEIA-KNDPTDRVVIIEDT 171 (299)
T ss_pred cCCeEEEEC----CCCCCHHHHHHHHHHHhh-ccCCCceEEEECCc
Confidence 356789998 459999999999988873 32 23446666554
No 389
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=42.90 E-value=12 Score=36.98 Aligned_cols=71 Identities=25% Similarity=0.333 Sum_probs=39.4
Q ss_pred CCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcc-c--cccCCCCCCceeeecCcccccccchhhhHHHHHHhHH
Q 010555 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTF-G--IKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLL 156 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~F-G--iKGGAaGGGysQViPmediNLHfTGD~HAItaA~NLl 156 (507)
-|+|.|||.|...|+.+| |+..++-==.|++...+ + +||-|..|-+ .=+||||-- |...+++--..+
T Consensus 39 GpagtGKtetik~La~~l----G~~~~vfnc~~~~~~~~l~ril~G~~~~GaW---~cfdefnrl---~~~vLS~i~~~i 108 (231)
T PF12774_consen 39 GPAGTGKTETIKDLARAL----GRFVVVFNCSEQMDYQSLSRILKGLAQSGAW---LCFDEFNRL---SEEVLSVISQQI 108 (231)
T ss_dssp SSTTSSHHHHHHHHHHCT----T--EEEEETTSSS-HHHHHHHHHHHHHHT-E---EEEETCCCS---SHHHHHHHHHHH
T ss_pred CCCCCCchhHHHHHHHHh----CCeEEEecccccccHHHHHHHHHHHhhcCch---hhhhhhhhh---hHHHHHHHHHHH
Confidence 489999999999998877 55555444445544331 1 3455555443 345777742 344455544445
Q ss_pred HHHH
Q 010555 157 AAAI 160 (507)
Q Consensus 157 aA~i 160 (507)
.++.
T Consensus 109 ~~i~ 112 (231)
T PF12774_consen 109 QSIQ 112 (231)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 390
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=42.88 E-value=15 Score=37.00 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=22.7
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCC
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk 103 (507)
=||++| |.|.||||++..+++.+. .+|.
T Consensus 60 ~vll~G----~pGTGKT~lA~~ia~~l~-~~g~ 87 (284)
T TIGR02880 60 HMSFTG----NPGTGKTTVALRMAQILH-RLGY 87 (284)
T ss_pred eEEEEc----CCCCCHHHHHHHHHHHHH-HcCC
Confidence 466666 689999999999999994 6664
No 391
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.75 E-value=30 Score=36.28 Aligned_cols=80 Identities=21% Similarity=0.136 Sum_probs=50.3
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC-CccccccCCCCCCceeeecCcccccccchhh
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG-PTFGIKGGAAGGGYSQVIPMDEFNLHLTGDI 146 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlG-P~FGiKGGAaGGGysQViPmediNLHfTGD~ 146 (507)
+.+.|-|||.+ ||||||-=|++.| ...|+.+..+= ..| |.++..+. ..|. |+=|..+.++++=.+
T Consensus 101 ~~~~I~ITGT~------GKTTTt~ml~~iL-~~~g~~~~~~G---niG~p~l~~~~~---~~~~-V~E~~s~~~~~~~~~ 166 (418)
T PRK00683 101 RYPSLGITGST------GKTTTILFLEHLL-KRLGIPAFAMG---NIGIPILDGMQQ---PGVR-VVEISSFQLADQEKS 166 (418)
T ss_pred CCCEEEEECCC------ChHHHHHHHHHHH-HHcCCCeEEEC---CcCHHHHHHhhc---CCEE-EEEechhhhCcCccc
Confidence 35689999985 9999999999999 57887554321 144 44554432 3444 777777766653323
Q ss_pred hH---HHHHHhHHHHHHH
Q 010555 147 HA---ITAANNLLAAAID 161 (507)
Q Consensus 147 HA---ItaA~NLlaA~iD 161 (507)
++ |..=.|+=.+=+|
T Consensus 167 ~~~~~iavitNi~~dHld 184 (418)
T PRK00683 167 YPVLSGGMILNISDNHLD 184 (418)
T ss_pred CCCccEEEEecCChhHhc
Confidence 33 4444566555555
No 392
>PHA02096 hypothetical protein
Probab=42.66 E-value=20 Score=31.80 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=21.7
Q ss_pred cCHHHHHHHhhhHHHHHHHHhc--cCCcEEEEecCCC
Q 010555 427 ENVALVEAGCVNLARHIANTKA--YGANVVVAVNMFA 461 (507)
Q Consensus 427 enl~al~~G~~NL~~HIen~~~--fGvpvVVAiN~F~ 461 (507)
-|+..-++.++...+--.-+++ ||.|.+|+||+=+
T Consensus 40 ~~~~~ak~~i~eylkgt~vikkrlfg~ptiv~inkps 76 (103)
T PHA02096 40 VSLKNAKKSIEEYLKGTTVIKKRLFGPPTIVSVNKPS 76 (103)
T ss_pred hHHHHHHHHHHHHhcccchhhhhhcCCCeEEEecCch
Confidence 3444444444444444444544 9999999999843
No 393
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=42.62 E-value=66 Score=28.93 Aligned_cols=53 Identities=8% Similarity=-0.049 Sum_probs=30.9
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhh
Q 010555 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
.++|+++++|+..-..+.+ .+...++++..|......++ +.=|+|-.+|-+.+
T Consensus 107 ~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~v~~lf~~l 161 (169)
T cd01892 107 GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFS--SKLGDSSNELFTKL 161 (169)
T ss_pred CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEE--eccCccHHHHHHHH
Confidence 4899999999987533222 12345677777764223332 34455766654444
No 394
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=42.56 E-value=33 Score=28.10 Aligned_cols=43 Identities=23% Similarity=0.424 Sum_probs=27.8
Q ss_pred ccccccCceeeechhhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 44 HYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 44 ~le~YG~~kAKi~l~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+|.-||.|..+ ++++ .++|+..++|+ |-|.||||+-=.+.=+|
T Consensus 5 ~L~Nw~~f~~~-~~~~------~~~g~~tli~G----~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 5 QLVNWGSFDGE-TIDF------DPRGDVTLITG----PNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEeccCccCCe-EEee------cCCCcEEEEEC----CCCCCHHHHHHHHHHHH
Confidence 35556666652 2221 25688888888 56999999876665544
No 395
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=42.54 E-value=24 Score=32.68 Aligned_cols=48 Identities=31% Similarity=0.454 Sum_probs=32.0
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccc
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FG 119 (507)
++++|+++| |.|.||+|..-=|.+-....++.-...+-|.|--|=+.|
T Consensus 1 ~~r~ivl~G----psg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g 48 (184)
T smart00072 1 DRRPIVLSG----PSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNG 48 (184)
T ss_pred CCcEEEEEC----CCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCC
Confidence 367888888 789999998777766642234555555667776654433
No 396
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=42.29 E-value=25 Score=33.78 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
++.++|.++|+ .|-||||++.-+++-.
T Consensus 17 ~~~~~v~I~G~----~G~GKT~LA~~~~~~~ 43 (287)
T PF00931_consen 17 NEVRVVAIVGM----GGIGKTTLARQVARDL 43 (287)
T ss_dssp TSSEEEEEEES----TTSSHHHHHHHHHCHH
T ss_pred CCeEEEEEEcC----CcCCcceeeeeccccc
Confidence 56889999997 6999999998887763
No 397
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=42.20 E-value=90 Score=31.42 Aligned_cols=54 Identities=17% Similarity=0.047 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHhccCCcEEEEecC-CCC-CCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010555 436 CVNLARHIANTKAYGANVVVAVNM-FAT-DSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 436 ~~NL~~HIen~~~fGvpvVVAiN~-F~t-DT~aEi~~v~~~~~~~G~~~~~~s~~w 489 (507)
+.|+...|+.+|+.|..|.+++.. |.+ -+++++..+.+.+.+.|+..+.+++..
T Consensus 117 ~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~ 172 (275)
T cd07937 117 VRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMA 172 (275)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 368999999999999998888863 432 346777777777788999877777765
No 398
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=42.16 E-value=50 Score=35.30 Aligned_cols=76 Identities=11% Similarity=0.135 Sum_probs=55.9
Q ss_pred ehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhh--hHHHHHHHHhccCCcEEEE-ecCCCCCCHHHHHHHHHHHHHc
Q 010555 402 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCV--NLARHIANTKAYGANVVVA-VNMFATDSKAELNAVRNAAMAA 478 (507)
Q Consensus 402 vRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~--NL~~HIen~~~fGvpvVVA-iN~F~tDT~aEi~~v~~~~~~~ 478 (507)
++.||-. |+..+..|- +..+++.++.+.||.. ...+-++.++++|+.+.+- |=-|+.+|.++++...+++.+.
T Consensus 290 l~~l~~a-G~~~v~iGi---ES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l 365 (472)
T TIGR03471 290 LKVMKEN-GLRLLLVGY---ESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKEL 365 (472)
T ss_pred HHHHHHc-CCCEEEEcC---CCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 4555543 444555552 5566777888888764 6667889999999986543 3368999999999999999998
Q ss_pred CCC
Q 010555 479 GAF 481 (507)
Q Consensus 479 G~~ 481 (507)
+..
T Consensus 366 ~~~ 368 (472)
T TIGR03471 366 NPH 368 (472)
T ss_pred CCC
Confidence 875
No 399
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=42.13 E-value=21 Score=33.36 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=20.4
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.|++|+++| |.|.||||+.--|+.-+
T Consensus 2 ~ge~i~l~G----~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 2 AGESYILMG----VSGSGKSLIGSKIAALF 27 (176)
T ss_pred CCcEEEEEC----CCCCCHHHHHHHHHHhc
Confidence 378888888 46999999887776655
No 400
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=41.89 E-value=83 Score=32.48 Aligned_cols=50 Identities=12% Similarity=0.045 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 010555 436 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 486 (507)
Q Consensus 436 ~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s 486 (507)
+....+.|++++++|++|.|..- ...++.+|+..+.+++.+.|+..+.+.
T Consensus 140 f~~~~~~i~~l~~~g~~v~i~~v-v~~~N~~~i~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 140 FAKKLAVARLVKAHGYPLTLNAV-IHRHNIDQIPRIIELAVELGADRLELA 189 (378)
T ss_pred HHHHHHHHHHHHHCCCceEEEEE-eecCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 34455567778888988766442 355678999999999999999755443
No 401
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=41.82 E-value=16 Score=29.08 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=15.3
Q ss_pred CCCCCcchhHhhHHHHH
Q 010555 81 PLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL 97 (507)
+.|.||||++--|.+.|
T Consensus 7 ~~gsGKst~~~~l~~~l 23 (69)
T cd02019 7 GSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999998887
No 402
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.70 E-value=29 Score=36.21 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=25.7
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
.+.|-|||.+ |||||+-=|++.| ...|+...
T Consensus 108 ~~vI~ITGS~------GKTTt~~~l~~iL-~~~g~~~~ 138 (450)
T PRK14106 108 APIVAITGTN------GKTTTTTLLGEIF-KNAGRKTL 138 (450)
T ss_pred CCEEEEeCCC------chHHHHHHHHHHH-HHcCCCeE
Confidence 6788888874 9999999999999 47787543
No 403
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=41.69 E-value=1.5e+02 Score=26.39 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=36.0
Q ss_pred cCCcEEEEecCCCCCCHH--------------HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSKA--------------ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~a--------------Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.++|++++.|+-.-..+. +.+..++++++.+...+..++ ++-|.|-.+|-++++
T Consensus 103 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~S--a~~~~~v~~lf~~~~ 170 (173)
T cd04130 103 PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECS--ALTQKNLKEVFDTAI 170 (173)
T ss_pred CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEe--CCCCCCHHHHHHHHH
Confidence 479999999997532211 223466788888874355444 466788888887765
No 404
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=41.64 E-value=65 Score=30.31 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=44.5
Q ss_pred hccCCcEEEEecCCCCC-CHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhh
Q 010555 447 KAYGANVVVAVNMFATD-SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 447 ~~fGvpvVVAiN~F~tD-T~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
+-|..|||=+|++-.-+ +++.++..+++.+.+|+... ...=+.=|+|-.+|-+.+
T Consensus 86 ~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i--f~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 86 SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEI--FEVSAVTGEGIEELKDYL 141 (143)
T ss_pred cccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCe--EEEECCCCcCHHHHHHHH
Confidence 45889999999998777 78999999999999999854 344455688888887654
No 405
>PRK04213 GTP-binding protein; Provisional
Probab=41.63 E-value=1.2e+02 Score=27.73 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=32.9
Q ss_pred HHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC--------eEEEccccccCchhhHHHHHhhh
Q 010555 444 ANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF--------DAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 444 en~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~--------~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
+.++..++|++|++|+..-...+ -+.+.+++++.|.. .++.++.-. | |-.+|-+.+.
T Consensus 124 ~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~--g-gi~~l~~~l~ 188 (201)
T PRK04213 124 DFLRELGIPPIVAVNKMDKIKNR-DEVLDEIAERLGLYPPWRQWQDIIAPISAKK--G-GIEELKEAIR 188 (201)
T ss_pred HHHHHcCCCeEEEEECccccCcH-HHHHHHHHHHhcCCccccccCCcEEEEeccc--C-CHHHHHHHHH
Confidence 34445799999999998753332 23445566666651 133343332 4 7666665554
No 406
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=41.57 E-value=43 Score=36.79 Aligned_cols=46 Identities=26% Similarity=0.270 Sum_probs=33.0
Q ss_pred hhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcc
Q 010555 437 VNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 437 ~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~ 487 (507)
.|+..=.+-+++||+|+|+-- .| -+++..+.+.|.++|+.+.++--
T Consensus 188 dN~~~m~~la~~yg~pvVv~~----~d-l~~L~~lv~~~~~~GI~dIILDP 233 (450)
T PRK04165 188 ENYEEMAELAKEYNCPLVVKA----PN-LEELKELVEKLQAAGIKDLVLDP 233 (450)
T ss_pred chHHHHHHHHHHcCCcEEEEc----hh-HHHHHHHHHHHHHcCCCcEEECC
Confidence 456666666788999998832 23 56777778888999997665543
No 407
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=41.43 E-value=90 Score=30.84 Aligned_cols=106 Identities=18% Similarity=0.116 Sum_probs=61.4
Q ss_pred CeEEeecccccccccccccccccccCCCCc------ceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhh
Q 010555 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTP------QCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCV 437 (507)
Q Consensus 364 dyVVTEAGFGaDlGaEKF~dIKCr~sgl~P------davVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~ 437 (507)
|+|.-|.. ..+.|. ...|-=|++-|.| |.+++|..++. | +.+ +.
T Consensus 5 D~V~~~~~-~~~~~~--i~~i~eR~~~L~r~~~~n~D~viiV~d~~~-------p-------------~~s-------~~ 54 (245)
T TIGR00157 5 DRVVWEPG-NVVKVY--GGAIAERKNELTRPIVANIDQIVIVSSAVL-------P-------------ELS-------LN 54 (245)
T ss_pred cEEEEEec-CCCceE--EEEEecccceEECcccccCCEEEEEEECCC-------C-------------CCC-------HH
Confidence 88887732 112232 3344444444443 88888887541 0 112 23
Q ss_pred hHHHHHHHHhccCCcEEEEecCCCCCCHHHH--HHHHHHHHHcCCCeEEEccccccCchhhHHHHHhh
Q 010555 438 NLARHIANTKAYGANVVVAVNMFATDSKAEL--NAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi--~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
+|.+.+..++..++|+|+++|+-.-.++.++ +.+..++ +.|.. +..++ ++=|+|-.+|-+.+
T Consensus 55 ~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~-v~~~S--Aktg~gi~eLf~~l 118 (245)
T TIGR00157 55 QLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ-VLMTS--SKNQDGLKELIEAL 118 (245)
T ss_pred HHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe-EEEEe--cCCchhHHHHHhhh
Confidence 4666666667789999999999875433333 3455554 47775 43332 44567777766554
No 408
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=41.10 E-value=71 Score=32.23 Aligned_cols=63 Identities=21% Similarity=0.139 Sum_probs=40.3
Q ss_pred hHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhh
Q 010555 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
.+.+.+..++..++|+|+++|+-.-.++.+......+..+.|.. +...+ ++=|+|-.+|-+.+
T Consensus 97 ~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~-v~~vS--A~~g~gi~~L~~~L 159 (287)
T cd01854 97 LLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYP-VLAVS--AKTGEGLDELREYL 159 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCe-EEEEE--CCCCccHHHHHhhh
Confidence 56677777788899999999997764444433334445667775 43332 34456766666554
No 409
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=41.06 E-value=23 Score=38.76 Aligned_cols=28 Identities=32% Similarity=0.687 Sum_probs=25.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
-.||-||+.+ |.|.|||-.++|++|-|+
T Consensus 63 ~aGrgiLi~G----ppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 63 MAGRGILIVG----PPGTGKTALAMGIARELG 90 (450)
T ss_pred ccccEEEEEC----CCCCcHHHHHHHHHHHhC
Confidence 4699999987 889999999999999885
No 410
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=41.03 E-value=95 Score=27.26 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=31.0
Q ss_pred HHhccCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHH
Q 010555 445 NTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKE 499 (507)
Q Consensus 445 n~~~fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~L 499 (507)
+...-+.|+|++.|+-.-..+.+ .+.++++|++.+.. +..++. +=|+|-.++
T Consensus 102 ~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa--~~~~~i~e~ 155 (166)
T cd04122 102 NLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLL-FLECSA--KTGENVEDA 155 (166)
T ss_pred HhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCE-EEEEEC--CCCCCHHHH
Confidence 33445789999999865433322 24567788888875 555544 333444443
No 411
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=40.96 E-value=13 Score=32.78 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=18.4
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+|.||+ +.|+||||++--|++.|+
T Consensus 2 iI~i~G----~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISG----PPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHcC
Confidence 356665 469999999988887763
No 412
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=40.76 E-value=26 Score=36.46 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=27.6
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRe 111 (507)
.++-|+|+| |-|.||||+.-.|.+.+. . . ..++++-+
T Consensus 159 ~~~nili~G----~tgSGKTTll~aL~~~ip-~-~-~ri~tiEd 195 (332)
T PRK13900 159 SKKNIIISG----GTSTGKTTFTNAALREIP-A-I-ERLITVED 195 (332)
T ss_pred cCCcEEEEC----CCCCCHHHHHHHHHhhCC-C-C-CeEEEecC
Confidence 467899998 459999999999988884 2 3 33566644
No 413
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=40.74 E-value=1.2e+02 Score=29.96 Aligned_cols=57 Identities=19% Similarity=0.044 Sum_probs=43.5
Q ss_pred HHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010555 433 EAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 433 ~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~w 489 (507)
+..+.++...++.+++.|..|.+..-....-+++++..+.+.+.++|+..+.+++..
T Consensus 106 ~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~ 162 (259)
T cd07939 106 AWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTV 162 (259)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCC
Confidence 456778889999999999987766544444457777777777778999888888765
No 414
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=40.72 E-value=30 Score=36.63 Aligned_cols=29 Identities=34% Similarity=0.312 Sum_probs=25.3
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
.|.|-|||.+ ||||||-=|.+.| ...|++
T Consensus 107 ~~~I~ITGTn------GKTTTt~ll~~iL-~~~g~~ 135 (461)
T PRK00421 107 RTSIAVAGTH------GKTTTTSLLAHVL-AEAGLD 135 (461)
T ss_pred CcEEEEECCC------CHHHHHHHHHHHH-HhcCCC
Confidence 3799999987 9999999999999 588864
No 415
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=40.70 E-value=91 Score=31.36 Aligned_cols=54 Identities=13% Similarity=-0.017 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010555 436 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 436 ~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~w 489 (507)
+.++.++|+.+|+.|+.|.+.+=.-..-+++++..+.+.+.+.|+..+.+++..
T Consensus 108 ~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~ 161 (266)
T cd07944 108 FDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSF 161 (266)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 668899999999999987776554333457777777777788999877777764
No 416
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=40.55 E-value=1.7e+02 Score=25.78 Aligned_cols=53 Identities=15% Similarity=0.021 Sum_probs=33.6
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
-..|++|+.|+..-..+.+ .+...++++..|.. +..+ =++=|.|-.+|-+.++
T Consensus 105 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 105 DNAQVILVGNKCDMEDERVVSSERGRQLADQLGFE-FFEA--SAKENINVKQVFERLV 159 (165)
T ss_pred CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCE-EEEE--ECCCCCCHHHHHHHHH
Confidence 4789999999865433322 24456677777875 3333 3456677777766654
No 417
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=40.52 E-value=90 Score=32.18 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=39.3
Q ss_pred hhHHHHHHHHhccCCcEEE--EecCCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 010555 437 VNLARHIANTKAYGANVVV--AVNMFATDSKAELNAVRNAAMAAGAFDAVV 485 (507)
Q Consensus 437 ~NL~~HIen~~~fGvpvVV--AiN~F~tDT~aEi~~v~~~~~~~G~~~~~~ 485 (507)
....+-|+++++.|+++.+ .+.+-..|+.++++.+.+++.+.|+....+
T Consensus 214 ~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl 264 (321)
T TIGR03822 214 AEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYL 264 (321)
T ss_pred HHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEE
Confidence 3556678888899999866 577777899999999999999999964433
No 418
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=40.50 E-value=74 Score=27.67 Aligned_cols=54 Identities=11% Similarity=0.012 Sum_probs=36.0
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
-++|++|+.|+-.-.+..+ .+.+.++|++.+.. ...+ =+.-|+|-.+|-+.+++
T Consensus 107 ~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 107 SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLS-FIET--SALDGTNVEEAFKQLLT 162 (165)
T ss_pred CCCeEEEEEECccccccccCCHHHHHHHHHHcCCE-EEEE--ECCCCCCHHHHHHHHHH
Confidence 4799999999977543322 34566777777764 4433 35667888888777654
No 419
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=40.41 E-value=1.2e+02 Score=26.92 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=34.1
Q ss_pred hccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 447 KAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 447 ~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
+..+.|+++++|+..--++++.+...++.+..+..-+.+| ++-|+|-.+|-+.+.
T Consensus 38 ~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iS---a~~~~gi~~L~~~l~ 92 (156)
T cd01859 38 LELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVS---AKERLGTKILRRTIK 92 (156)
T ss_pred HhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEE---ccccccHHHHHHHHH
Confidence 3458999999999875445555544445555555422223 455677777776654
No 420
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=40.38 E-value=33 Score=35.83 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=28.6
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRe 111 (507)
+.|-|+| +.|.||||+.--|...|. ..|.++ +++..
T Consensus 206 ~~~~~~g----~~~~GKtt~~~~l~~~l~-~~g~~v-~~iKh 241 (366)
T PRK14489 206 PLLGVVG----YSGTGKTTLLEKLIPELI-ARGYRI-GLIKH 241 (366)
T ss_pred cEEEEec----CCCCCHHHHHHHHHHHHH-HcCCEE-EEEEE
Confidence 5677776 579999999999999994 668764 56664
No 421
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=40.35 E-value=1.3e+02 Score=25.76 Aligned_cols=55 Identities=16% Similarity=0.056 Sum_probs=31.9
Q ss_pred HhccCC-cEEEEecCCCCCCHHH----HHHHHHHHHH---cCCCeEEEccccccCchhhHHHHHhh
Q 010555 446 TKAYGA-NVVVAVNMFATDSKAE----LNAVRNAAMA---AGAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 446 ~~~fGv-pvVVAiN~F~tDT~aE----i~~v~~~~~~---~G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
++..+. |+++++|+..-..+.+ .+.+.++++. .+.. ++.++ ++=|+|-.+|-+.+
T Consensus 99 ~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l 161 (164)
T cd04171 99 LELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAP-IFPVS--AVTGEGIEELKEYL 161 (164)
T ss_pred HHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCc-EEEEe--CCCCcCHHHHHHHH
Confidence 444566 9999999986544432 3444555554 2444 44443 45567766665544
No 422
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=40.34 E-value=40 Score=35.80 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=28.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
+.|.+++++| |-|.||||+..-++..+. .-|.+++.
T Consensus 80 ~~GslvLI~G----~pG~GKStLllq~a~~~a-~~g~~VlY 115 (372)
T cd01121 80 VPGSVILIGG----DPGIGKSTLLLQVAARLA-KRGGKVLY 115 (372)
T ss_pred cCCeEEEEEe----CCCCCHHHHHHHHHHHHH-hcCCeEEE
Confidence 5689999999 679999999999988884 55555543
No 423
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=40.11 E-value=28 Score=38.86 Aligned_cols=40 Identities=33% Similarity=0.411 Sum_probs=29.3
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRe 111 (507)
+.|..|++||. .|.||||++-.|++.|+..-|. .+..|+.
T Consensus 390 ~~g~~Ivl~Gl----~GSGKSTia~~La~~L~~~~g~-~~~~lD~ 429 (568)
T PRK05537 390 KQGFTVFFTGL----SGAGKSTIAKALMVKLMEMRGR-PVTLLDG 429 (568)
T ss_pred CCCeEEEEECC----CCChHHHHHHHHHHHhhhccCc-eEEEeCC
Confidence 45889999986 5999999999999999521333 3444443
No 424
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=39.98 E-value=27 Score=36.38 Aligned_cols=31 Identities=35% Similarity=0.501 Sum_probs=25.3
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
|-|+||||-.-|+.|-| .++|.++.+.==.|
T Consensus 10 PPgSGKsTYc~g~~~fl-s~~gr~~~vVNLDP 40 (290)
T KOG1533|consen 10 PPGSGKSTYCNGMSQFL-SAIGRPVAVVNLDP 40 (290)
T ss_pred CCCCCccchhhhHHHHH-HHhCCceEEEecCC
Confidence 78999999999999999 48998766543333
No 425
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=39.96 E-value=14 Score=35.68 Aligned_cols=18 Identities=44% Similarity=0.593 Sum_probs=15.7
Q ss_pred CCCCCcchhHhhHHHHHh
Q 010555 81 PLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~ 98 (507)
.+|.||||+...|++.|+
T Consensus 3 VsG~GKStvg~~lA~~lg 20 (161)
T COG3265 3 VSGSGKSTVGSALAERLG 20 (161)
T ss_pred CCccCHHHHHHHHHHHcC
Confidence 479999999999988885
No 426
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=39.88 E-value=39 Score=36.52 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=0.0
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhc-CCcE-EEEecCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-DKKV-VTCLRQP 112 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~l-gk~a-~~~lReP 112 (507)
|.|.++||+| |.|.||||.+.=++..- .+- |.++ ++.+-||
T Consensus 29 p~Gs~~li~G----~pGsGKT~l~~qf~~~~-~~~~ge~~lyis~ee~ 71 (509)
T PRK09302 29 PKGRPTLVSG----TAGTGKTLFALQFLVNG-IKRFDEPGVFVTFEES 71 (509)
T ss_pred CCCcEEEEEe----CCCCCHHHHHHHHHHHH-HHhcCCCEEEEEccCC
No 427
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=39.86 E-value=22 Score=35.09 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=21.5
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.|+=||++| |.|.||||++.-|++.+
T Consensus 20 ~g~~vLL~G----~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 20 SGYPVHLRG----PAGTGKTTLAMHVARKR 45 (262)
T ss_pred cCCeEEEEc----CCCCCHHHHHHHHHHHh
Confidence 366688887 89999999999888766
No 428
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=39.83 E-value=91 Score=26.82 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHhc-c--CCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 436 CVNLARHIANTKA-Y--GANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 436 ~~NL~~HIen~~~-f--GvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
+.++...++.++. . ++|+++++|+-.-.... -.+.+..++++.++. +.. .=+.=|+|-.+|-+.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~--~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 88 FDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAM-FIE--TSAKAGHNVKELFRKIAS 159 (161)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEE--EeCCCCCCHHHHHHHHHH
Confidence 4455555555433 4 49999999987662221 223455666667765 332 234556677777766543
No 429
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=39.77 E-value=55 Score=35.00 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=60.1
Q ss_pred eehHHHhcC-CCCCccCCCCCchhccccCHHHHHHHhh--hHHHHHHHHhccCCcEEEE---ecCCCCCCHHHHHHHHHH
Q 010555 401 TIRALKMHG-GGPQVVAGKPLDHAYLNENVALVEAGCV--NLARHIANTKAYGANVVVA---VNMFATDSKAELNAVRNA 474 (507)
Q Consensus 401 TvRALK~HG-G~~~~~~g~pL~~~~~~enl~al~~G~~--NL~~HIen~~~fGvpvVVA---iN~F~tDT~aEi~~v~~~ 474 (507)
.+++|+-+| |.+....|- +..+.+-+..+.++.. ...+=|+.+++.|..+.+. |-=||.+|+++++...++
T Consensus 236 ll~~l~~~~~g~~~l~igv---QSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~ 312 (440)
T PRK14334 236 VIAAMAETPAVCEYIHLPV---QSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLSTDIIVGFPGETEEDFQETLSL 312 (440)
T ss_pred HHHHHHhcCcCCCeEEecc---ccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEECCCCCHHHHHHHHHH
Confidence 466776654 556555552 3444555666666654 3667788888887665443 346999999999999999
Q ss_pred HHHcCCCeEEEccccccCch
Q 010555 475 AMAAGAFDAVVCSHHAHGGK 494 (507)
Q Consensus 475 ~~~~G~~~~~~s~~wa~GGe 494 (507)
+++.+...+.+...-...|-
T Consensus 313 i~~l~~~~i~~f~ysp~pGT 332 (440)
T PRK14334 313 YDEVGYDSAYMFIYSPRPGT 332 (440)
T ss_pred HHhcCCCEeeeeEeeCCCCC
Confidence 99999864433332233443
No 430
>PLN02200 adenylate kinase family protein
Probab=39.75 E-value=26 Score=34.42 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=22.1
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..++|+|+|. -|.||||.+--|++.++
T Consensus 42 ~~~ii~I~G~----PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGG----PGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 3468888884 59999999999988774
No 431
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=39.71 E-value=15 Score=35.51 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=19.4
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++|||= +-|.||||+..-|+|+|+
T Consensus 4 ~IvLiG-----~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 4 NIVLIG-----FMGAGKSTIGRALAKALN 27 (172)
T ss_pred cEEEEc-----CCCCCHhHHHHHHHHHcC
Confidence 355553 569999999999999995
No 432
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=39.70 E-value=98 Score=32.40 Aligned_cols=52 Identities=17% Similarity=0.110 Sum_probs=42.3
Q ss_pred hHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010555 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~w 489 (507)
++.+||+.+|+.|..|++.+=.-..-+++++..+.+.+.+.|+..+.+++..
T Consensus 116 ~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~ 167 (337)
T PRK08195 116 VSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSA 167 (337)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 6899999999999988886654445578888888888889999877777764
No 433
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=39.64 E-value=25 Score=33.13 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=23.8
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+++=++++| |.|.|||.++++++..+. .-|+++.
T Consensus 46 ~~~~l~l~G----~~G~GKThLa~ai~~~~~-~~g~~v~ 79 (178)
T PF01695_consen 46 NGENLILYG----PPGTGKTHLAVAIANEAI-RKGYSVL 79 (178)
T ss_dssp C--EEEEEE----STTSSHHHHHHHHHHHHH-HTT--EE
T ss_pred cCeEEEEEh----hHhHHHHHHHHHHHHHhc-cCCccee
Confidence 355577777 459999999999999884 5676643
No 434
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=39.42 E-value=1.2e+02 Score=25.76 Aligned_cols=60 Identities=18% Similarity=0.092 Sum_probs=36.8
Q ss_pred HHHhccCCcEEEEecCCCCCCH--HHHHHHHHHHHH-cC----CCeEEEccccccCchhhHHHHHhhhhc
Q 010555 444 ANTKAYGANVVVAVNMFATDSK--AELNAVRNAAMA-AG----AFDAVVCSHHAHGGKGAFKEPVRMLHS 506 (507)
Q Consensus 444 en~~~fGvpvVVAiN~F~tDT~--aEi~~v~~~~~~-~G----~~~~~~s~~wa~GGeGa~~LA~~v~~~ 506 (507)
+.++..+.|+++++|+..-..+ .+++.+.+..++ .+ .+ +..+ =++-|+|-.++-+.+...
T Consensus 107 ~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 107 GLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAP-IVFI--SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred HHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCc-eEEE--eccCCCCHHHHHHHHHHh
Confidence 3445678999999999754333 566665555543 22 22 3322 345678888877766543
No 435
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=39.40 E-value=21 Score=35.85 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=21.2
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..+|.|+| +.|+||||++-.|.+-|+
T Consensus 8 ~iiIgIaG----~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 8 VIIIGIAG----GSGSGKTTVAKELSEQLG 33 (218)
T ss_pred eEEEEEeC----CCCCCHHHHHHHHHHHhC
Confidence 45777777 679999999999988884
No 436
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=39.28 E-value=1e+02 Score=26.79 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=30.1
Q ss_pred ccCCcEEEEecCCCCCCHHHHHHHHHHHHH----cCCC--eEEEccccccCchhhHHHHHhhh
Q 010555 448 AYGANVVVAVNMFATDSKAELNAVRNAAMA----AGAF--DAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 448 ~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~----~G~~--~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
..++|++|++|+-..-...+.+.+.++.++ .+.. .+..+.... |+|-.++-+.+.
T Consensus 105 ~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--g~gv~e~~~~l~ 165 (167)
T cd04160 105 LEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALE--GTGVREGIEWLV 165 (167)
T ss_pred hcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCC--CcCHHHHHHHHh
Confidence 358999999998754333222333333322 2221 244444444 778777766654
No 437
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=39.21 E-value=28 Score=36.61 Aligned_cols=49 Identities=41% Similarity=0.386 Sum_probs=36.0
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccccC
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKGG 123 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiKGG 123 (507)
.|+|++ =.=|.||||||+=|+-+| ++.|++..+- |=-||+==-||.+|-
T Consensus 49 iI~VlS---GKGGVGKSTvt~nla~~L-a~~g~~vglLD~Dl~GPSiP~m~g~e~~ 100 (300)
T KOG3022|consen 49 IILVLS---GKGGVGKSTVTVNLALAL-ASEGKKVGLLDADLCGPSIPRMMGLEGE 100 (300)
T ss_pred EEEEEe---CCCCCchhHHHHHHHHHH-hcCCCcEEEEeecccCCCchhhcCCCCc
Confidence 566654 467999999999999999 5778876542 456777655777664
No 438
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=39.11 E-value=29 Score=36.61 Aligned_cols=28 Identities=29% Similarity=0.247 Sum_probs=24.7
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCC
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk 103 (507)
.|.|-|||.+ ||||||-=|++.| ...|+
T Consensus 99 ~~~IaITGTn------GKTTTt~ll~~iL-~~~g~ 126 (448)
T TIGR01082 99 RHSIAVAGTH------GKTTTTAMIAVIL-KEAGL 126 (448)
T ss_pred CcEEEEECCC------ChHHHHHHHHHHH-HHcCC
Confidence 4799999986 9999999999999 57887
No 439
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=39.09 E-value=1.3e+02 Score=27.26 Aligned_cols=64 Identities=8% Similarity=-0.014 Sum_probs=35.9
Q ss_pred hHHHHHHHHhcc--CCcEEEEecCCCCCCHH----H--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTKAY--GANVVVAVNMFATDSKA----E--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~f--GvpvVVAiN~F~tDT~a----E--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++..-++.++++ ++|++++.|+..-.... + .+.+.+++.+.++. +..++. +=|+|-.+|-+.+.
T Consensus 91 ~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa--~~~~gv~~l~~~i~ 162 (193)
T cd04118 91 RAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQ-HFETSS--KTGQNVDELFQKVA 162 (193)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCe-EEEEeC--CCCCCHHHHHHHHH
Confidence 333334444443 79999999998642211 1 23456777777775 443333 33456655555443
No 440
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=39.09 E-value=98 Score=26.85 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=36.4
Q ss_pred hHHHHHHHHhc-cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTKA-YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~-fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++.+.+.+... .++|+|++.|+.....+. +.+...++++..+.. ++.++.- =|.|-.++-+.+.
T Consensus 93 ~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~--~~~~v~~l~~~l~ 159 (163)
T cd04176 93 PMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCP-FMETSAK--SKTMVNELFAEIV 159 (163)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCE-EEEecCC--CCCCHHHHHHHHH
Confidence 33444444433 689999999997653322 233456677777774 4444432 3355555554443
No 441
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=39.06 E-value=19 Score=38.06 Aligned_cols=21 Identities=52% Similarity=0.691 Sum_probs=16.7
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTV 91 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttI 91 (507)
++|.+++.-| |.|+||||+-.
T Consensus 27 ~~Gef~vllG----PSGcGKSTlLr 47 (338)
T COG3839 27 EDGEFVVLLG----PSGCGKSTLLR 47 (338)
T ss_pred cCCCEEEEEC----CCCCCHHHHHH
Confidence 5688887776 88999999853
No 442
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=39.06 E-value=25 Score=33.78 Aligned_cols=28 Identities=36% Similarity=0.328 Sum_probs=21.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+...+|.++| |-|.||||++--|++.|.
T Consensus 31 ~~~~iigi~G----~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAG----PPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEEC----CCCCCHHHHHHHHHHHhh
Confidence 3345666666 569999999999988884
No 443
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=38.89 E-value=38 Score=31.71 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=23.3
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 66 ~~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
-+.|+++.++| |.|.||||++.-++...
T Consensus 16 ~~~g~v~~I~G----~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 16 IPTGRITEIFG----EFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CcCCcEEEEeC----CCCCChhHHHHHHHHHh
Confidence 36799999999 78999999998776554
No 444
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=38.86 E-value=90 Score=31.94 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=35.0
Q ss_pred hHHHHHHHHhccCC-cEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccC
Q 010555 438 NLARHIANTKAYGA-NVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHG 492 (507)
Q Consensus 438 NL~~HIen~~~fGv-pvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~G 492 (507)
...+.|+.+++.|+ ++.+-.=-.+..+++|+..+.+++++.|+. +...+...-|
T Consensus 141 ~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~-~~~ie~mP~g 195 (329)
T PRK13361 141 RVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLD-IAFIEEMPLG 195 (329)
T ss_pred HHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCe-EEEEecccCC
Confidence 44445566677888 554321123456789999999999999995 5555444444
No 445
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=38.85 E-value=1.1e+02 Score=30.25 Aligned_cols=35 Identities=20% Similarity=0.097 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEccccccCchhhHH
Q 010555 464 SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFK 498 (507)
Q Consensus 464 T~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~ 498 (507)
|++|+..+.+.|.+.|+..+..|+.|..||.--.+
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~ 168 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFSTGGATVED 168 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHH
Confidence 57899999999999999877788999888865444
No 446
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.82 E-value=31 Score=36.61 Aligned_cols=31 Identities=29% Similarity=0.157 Sum_probs=26.7
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
.|+|-|||.+ |||||+-=|++.| ...|+++.
T Consensus 117 ~~vIaITGTn------GKTTT~~ll~~iL-~~~g~~~~ 147 (458)
T PRK01710 117 AKVFGVTGSD------GKTTTTTLIYEML-KEEGYKTW 147 (458)
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HhCCCCEE
Confidence 5799999986 9999999999999 47788764
No 447
>PLN02199 shikimate kinase
Probab=38.75 E-value=21 Score=37.38 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=23.8
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..|+-|+++|+. |.||||+..=|++.|+
T Consensus 100 l~~~~I~LIG~~----GSGKSTVgr~LA~~Lg 127 (303)
T PLN02199 100 LNGRSMYLVGMM----GSGKTTVGKLMSKVLG 127 (303)
T ss_pred cCCCEEEEECCC----CCCHHHHHHHHHHHhC
Confidence 358889999986 9999999988888874
No 448
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=38.62 E-value=1e+02 Score=23.70 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=27.0
Q ss_pred CeEEeecccccccccccccccccccCCCCcceEEEEeeeh
Q 010555 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIR 403 (507)
Q Consensus 364 dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvR 403 (507)
||++.+.+.+.+..... |+..-..+|.+++|.+..
T Consensus 35 d~iivD~~~~~~~~~~~-----~~~~~~~~~~vi~v~~~~ 69 (99)
T cd01983 35 DYVLIDTPPGLGLLVLL-----CLLALLAADLVIIVTTPE 69 (99)
T ss_pred CEEEEeCCCCccchhhh-----hhhhhhhCCEEEEecCCc
Confidence 89999999888754333 677777889999998744
No 449
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=38.48 E-value=16 Score=35.82 Aligned_cols=27 Identities=41% Similarity=0.585 Sum_probs=18.3
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+|.||| || |.||||++-=|. . +|.+.+
T Consensus 2 ~I~ITG---TP-GvGKTT~~~~L~-~----lg~~~i 28 (180)
T COG1936 2 LIAITG---TP-GVGKTTVCKLLR-E----LGYKVI 28 (180)
T ss_pred eEEEeC---CC-CCchHHHHHHHH-H----hCCcee
Confidence 466666 44 999999987665 3 455544
No 450
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=38.47 E-value=1.1e+02 Score=30.33 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=44.9
Q ss_pred HHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 439 L~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
...|++.+-+.|+|+|+.-- .=+++|++.+.+ |. .++. ++++-.|+-|---...|++...
T Consensus 73 ~~~~~~~al~~G~~vvigtt---G~s~~~~~~l~~-aa-~~~~-v~~s~n~s~g~~~~~~l~~~aa 132 (257)
T PRK00048 73 TLENLEFALEHGKPLVIGTT---GFTEEQLAELEE-AA-KKIP-VVIAPNFSIGVNLLMKLAEKAA 132 (257)
T ss_pred HHHHHHHHHHcCCCEEEECC---CCCHHHHHHHHH-Hh-cCCC-EEEECcchHHHHHHHHHHHHHH
Confidence 35677778889999998832 335778888888 44 6776 7899999998777777776543
No 451
>PRK08760 replicative DNA helicase; Provisional
Probab=38.46 E-value=1.4e+02 Score=32.64 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=29.6
Q ss_pred hhhhhhc-CCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 58 SVLDELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 58 ~~l~~~~-~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
.-|+++- .-.+|.+|+|+|- -|-||||++.-++.....+-|++
T Consensus 217 ~~LD~~t~G~~~G~LivIaar----Pg~GKTafal~iA~~~a~~~g~~ 260 (476)
T PRK08760 217 NDFDAMTAGLQPTDLIILAAR----PAMGKTTFALNIAEYAAIKSKKG 260 (476)
T ss_pred HHHHHHhcCCCCCceEEEEeC----CCCChhHHHHHHHHHHHHhcCCc
Confidence 4455532 3367999999995 48999999998887663233443
No 452
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=38.45 E-value=1.2e+02 Score=31.54 Aligned_cols=58 Identities=17% Similarity=0.068 Sum_probs=35.7
Q ss_pred HHHHhccCCcEEEEecCCCCC-CHHHHHHHHHHHHHc-----CCCeEEEccccccCchhhHHHHHhh
Q 010555 443 IANTKAYGANVVVAVNMFATD-SKAELNAVRNAAMAA-----GAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 443 Ien~~~fGvpvVVAiN~F~tD-T~aEi~~v~~~~~~~-----G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
+..+.+.|.|+||++|+..-. .+++.+.+++..++. +++ ++.++. .=|.|-.+|-+.+
T Consensus 276 ~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-vi~~SA--~~g~~v~~l~~~i 339 (429)
T TIGR03594 276 AGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAP-IVFISA--LTGQGVDKLLDAI 339 (429)
T ss_pred HHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCc-eEEEeC--CCCCCHHHHHHHH
Confidence 444566799999999998754 556666666555432 343 444444 3356666655544
No 453
>PRK12377 putative replication protein; Provisional
Probab=38.44 E-value=26 Score=35.13 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=27.0
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEec
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lR 110 (507)
.+-++++| |.|.|||+++.+++..|. .-|+++ .++.
T Consensus 101 ~~~l~l~G----~~GtGKThLa~AIa~~l~-~~g~~v-~~i~ 136 (248)
T PRK12377 101 CTNFVFSG----KPGTGKNHLAAAIGNRLL-AKGRSV-IVVT 136 (248)
T ss_pred CCeEEEEC----CCCCCHHHHHHHHHHHHH-HcCCCe-EEEE
Confidence 34677777 459999999999999994 557664 4443
No 454
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=38.43 E-value=37 Score=28.76 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=15.4
Q ss_pred CCCCCcchhHhhHHHHHh
Q 010555 81 PLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~ 98 (507)
|.|.||||++..++..+.
T Consensus 7 ~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 7 PTGSGKTTLALQLALNIA 24 (165)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 459999999999988774
No 455
>PRK12736 elongation factor Tu; Reviewed
Probab=38.25 E-value=1.2e+02 Score=31.93 Aligned_cols=53 Identities=19% Similarity=0.133 Sum_probs=33.5
Q ss_pred hHHHHHHHHhccCCc-EEEEecCCCCCCHHH----HH-HHHHHHHHcCCC----eEEEccccc
Q 010555 438 NLARHIANTKAYGAN-VVVAVNMFATDSKAE----LN-AVRNAAMAAGAF----DAVVCSHHA 490 (507)
Q Consensus 438 NL~~HIen~~~fGvp-vVVAiN~F~tDT~aE----i~-~v~~~~~~~G~~----~~~~s~~wa 490 (507)
.-..|+..++.+|+| .||++|+..--+++| +. .+++++++.+.. .++..+.+.
T Consensus 115 ~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~ 177 (394)
T PRK12736 115 QTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALK 177 (394)
T ss_pred hHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccc
Confidence 345788889999999 579999987533333 22 455666666631 245545444
No 456
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=38.12 E-value=17 Score=33.34 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.2
Q ss_pred CCCCCcchhHhhHHHHHh
Q 010555 81 PLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~ 98 (507)
|.|.||||++-.|+.-|+
T Consensus 3 ~sGsGKSTla~~la~~l~ 20 (163)
T PRK11545 3 VSGSGKSAVASEVAHQLH 20 (163)
T ss_pred CCCCcHHHHHHHHHHHhC
Confidence 679999999988877773
No 457
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=37.87 E-value=1.2e+02 Score=28.93 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=33.5
Q ss_pred cCCcEEEEecCCCCCCHHHH--HHHHHHHHHc-CCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSKAEL--NAVRNAAMAA-GAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aEi--~~v~~~~~~~-G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
-++|+|++.|+-.-..+.|+ +...++|++. +.. +..++ |+=|+|-.++=+.++
T Consensus 104 ~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~-~~etS--Aktg~gV~e~F~~l~ 159 (202)
T cd04120 104 EDAELLLVGNKLDCETDREISRQQGEKFAQQITGMR-FCEAS--AKDNFNVDEIFLKLV 159 (202)
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCE-EEEec--CCCCCCHHHHHHHHH
Confidence 47999999999765433333 3456677764 664 44444 667777766654443
No 458
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=37.71 E-value=38 Score=40.10 Aligned_cols=54 Identities=35% Similarity=0.506 Sum_probs=41.3
Q ss_pred cccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEE
Q 010555 376 IGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVV 455 (507)
Q Consensus 376 lGaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVV 455 (507)
-|-|.|-|.+.|.|.|. |.++||.-| |||=-|+ -+ .-|+++|.-..|.||
T Consensus 548 pghEsFtnlRsrgsslC-~~aIlvvdI----mhGlepq--------------ti-----------ESi~lLR~rktpFiv 597 (1064)
T KOG1144|consen 548 PGHESFTNLRSRGSSLC-DLAILVVDI----MHGLEPQ--------------TI-----------ESINLLRMRKTPFIV 597 (1064)
T ss_pred CCchhhhhhhhcccccc-ceEEEEeeh----hccCCcc--------------hh-----------HHHHHHHhcCCCeEE
Confidence 46899999999999997 667777765 7873332 11 236778889999999
Q ss_pred EecC
Q 010555 456 AVNM 459 (507)
Q Consensus 456 AiN~ 459 (507)
|+|+
T Consensus 598 ALNK 601 (1064)
T KOG1144|consen 598 ALNK 601 (1064)
T ss_pred eehh
Confidence 9997
No 459
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=37.51 E-value=17 Score=32.82 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=18.2
Q ss_pred EEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 72 VVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|+++| |-|.||||.+--|++.++
T Consensus 2 i~i~G----~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLG----GPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEEC----CCCCCHHHHHHHHHHHcC
Confidence 55665 569999999998888773
No 460
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=37.46 E-value=1.5e+02 Score=30.27 Aligned_cols=43 Identities=16% Similarity=0.057 Sum_probs=33.1
Q ss_pred EecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHH
Q 010555 456 AVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFK 498 (507)
Q Consensus 456 AiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~ 498 (507)
+|=-..-=|++|+...++.|.++|+..+=-|+.|+.||.=-.+
T Consensus 130 VIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~ed 172 (228)
T COG0274 130 VILETGLLTDEEKRKACEIAIEAGADFVKTSTGFSAGGATVED 172 (228)
T ss_pred EEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHH
Confidence 4444556678999999999999999866678889977765444
No 461
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=37.44 E-value=26 Score=32.95 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=20.0
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHH
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qa 96 (507)
.|+=||++| |.|.||||++.-|.+.
T Consensus 13 ~g~gvLi~G----~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITG----PSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEc----CCCCCHHHHHHHHHHc
Confidence 367788887 7899999999877654
No 462
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=37.28 E-value=1.1e+02 Score=31.96 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=40.6
Q ss_pred hHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010555 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~w 489 (507)
+..+||+.+|+.|..|++.+=.-..-|++++..+.+.+.+.|+..+.+++..
T Consensus 115 ~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~ 166 (333)
T TIGR03217 115 VSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSA 166 (333)
T ss_pred HHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCC
Confidence 6789999999999998776643334467888888888889999877777654
No 463
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=37.18 E-value=1.4e+02 Score=23.86 Aligned_cols=62 Identities=10% Similarity=0.022 Sum_probs=37.4
Q ss_pred HHHHHHHhccCCcEEEEecCCCCCCHHHHHH---HHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 440 ARHIANTKAYGANVVVAVNMFATDSKAELNA---VRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 440 ~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~---v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
..........++|++|++|+-.-...++.+. .+......+.. ++.++.. -|+|-.++-+.+.
T Consensus 92 ~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~--~~~~i~~~~~~l~ 156 (157)
T cd00882 92 LLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVP-YFETSAK--TGENVEELFEELA 156 (157)
T ss_pred HHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCc-EEEEecC--CCCChHHHHHHHh
Confidence 3455566778999999999965544444443 23444445554 5555444 4556666665553
No 464
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=37.13 E-value=30 Score=35.86 Aligned_cols=37 Identities=27% Similarity=0.236 Sum_probs=30.3
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSl 114 (507)
|.|-|||.| |||||+-=|.+-| ...|+++ ...--|.+
T Consensus 19 ~vI~VtGTN------GKgSt~~~l~~iL-~~~g~~v-g~~tSphl 55 (397)
T TIGR01499 19 PVIHVAGTN------GKGSTCAFLESIL-RAAGYKV-GLFTSPHL 55 (397)
T ss_pred CEEEEeCCC------ChHHHHHHHHHHH-HHcCCCe-eEEeCCCc
Confidence 689999997 9999999999999 5789886 44555554
No 465
>PRK04841 transcriptional regulator MalT; Provisional
Probab=36.98 E-value=22 Score=39.91 Aligned_cols=51 Identities=27% Similarity=0.285 Sum_probs=34.4
Q ss_pred hhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010555 58 SVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 58 ~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP 116 (507)
.+++++..-...++++|+| |+|-||||... |-+ ...+.-+-..|++.+--|
T Consensus 21 rl~~~l~~~~~~~~~~v~a----paG~GKTtl~~---~~~-~~~~~~~w~~l~~~d~~~ 71 (903)
T PRK04841 21 RLLAKLSGANNYRLVLVTS----PAGYGKTTLIS---QWA-AGKNNLGWYSLDESDNQP 71 (903)
T ss_pred HHHHHHhcccCCCeEEEEC----CCCCCHHHHHH---HHH-HhCCCeEEEecCcccCCH
Confidence 3444454445678999998 89999999864 555 344544456777766666
No 466
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=36.92 E-value=87 Score=31.39 Aligned_cols=23 Identities=9% Similarity=0.252 Sum_probs=17.5
Q ss_pred HHHHHHhccCCcEEEEecCCCCC
Q 010555 441 RHIANTKAYGANVVVAVNMFATD 463 (507)
Q Consensus 441 ~HIen~~~fGvpvVVAiN~F~tD 463 (507)
++++.++.+++|++|++|+....
T Consensus 114 ~i~~~~~~~~~P~iivvNK~D~~ 136 (267)
T cd04169 114 KLFEVCRLRGIPIITFINKLDRE 136 (267)
T ss_pred HHHHHHHhcCCCEEEEEECCccC
Confidence 44555667899999999998643
No 467
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=36.75 E-value=2.1e+02 Score=32.31 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=54.8
Q ss_pred CeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHH
Q 010555 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHI 443 (507)
Q Consensus 364 dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HI 443 (507)
||+|=|+|-|--+-+-.++ ..|+++|| ++|. .+-++.|-..++...+|=
T Consensus 159 D~aVlEvGlgGr~DaTnvi--------~~p~v~vI-TnIg----------------------~DH~~~LG~Tle~IA~~K 207 (530)
T PLN02881 159 DVAILEVGLGGRLDATNVV--------QKPVVCGI-TSLG----------------------YDHMEILGDTLGKIAGEK 207 (530)
T ss_pred CEEEEEecCCCCchhhhcc--------CCCCEEEE-cccc----------------------HHHHHhhcCCHHHHHHHH
Confidence 9999999987655333321 14765544 3332 122334444456777777
Q ss_pred HHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 010555 444 ANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 486 (507)
Q Consensus 444 en~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s 486 (507)
..+-+-|+|+|.+- . .++-.+.+++.|++.|+. ..+.
T Consensus 208 agI~k~g~p~vt~~----q-~~ea~~vl~~~A~e~~a~-l~~v 244 (530)
T PLN02881 208 AGIFKPGVPAFTVP----Q-PDEAMRVLEERASELGVP-LQVV 244 (530)
T ss_pred HHHHhcCCCEEEeC----C-ChHHHHHHHHHHHHhCCc-EEEe
Confidence 77778899998763 2 245567889999999997 4443
No 468
>PRK04182 cytidylate kinase; Provisional
Probab=36.65 E-value=17 Score=32.32 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=18.2
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.|.+++. .|.||||++--|++.|
T Consensus 2 ~I~i~G~----~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGP----PGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECC----CCCCHHHHHHHHHHHc
Confidence 4666664 6999999998888776
No 469
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=36.65 E-value=19 Score=34.41 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=23.0
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccc
Q 010555 454 VVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 454 VVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~ 488 (507)
.|.|--|-+=++.++++++.++...+-. +++-+.
T Consensus 259 ~i~IDE~QD~s~~Q~~il~~l~~~~~~~-~~vGD~ 292 (315)
T PF00580_consen 259 HILIDEFQDTSPLQLRILKKLFKNPENL-FIVGDP 292 (315)
T ss_dssp EEEESSGGG-BHHHHHHHHHHHTTTTTE-EEEE-G
T ss_pred eEEeEccccCCHHHHHHHHHHHHhhcee-EEeCCC
Confidence 6778888888899999999888755332 344443
No 470
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=36.54 E-value=38 Score=35.82 Aligned_cols=32 Identities=38% Similarity=0.338 Sum_probs=27.3
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+.++|-|||.+ |||||+-=|.+.| ...|+++.
T Consensus 84 ~~~vI~ITGTn------GKTTT~~ml~~iL-~~~g~~~~ 115 (464)
T TIGR01085 84 KLKVIGVTGTN------GKTTTTSLIAQLL-RLLGKKTG 115 (464)
T ss_pred ccEEEEEECCC------CcHhHHHHHHHHH-HHcCCCEE
Confidence 57899999986 9999999999999 47888753
No 471
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=36.49 E-value=1.1e+02 Score=28.85 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=14.9
Q ss_pred HHHHHHHhccCCcE-EEEecCCCCC
Q 010555 440 ARHIANTKAYGANV-VVAVNMFATD 463 (507)
Q Consensus 440 ~~HIen~~~fGvpv-VVAiN~F~tD 463 (507)
.+.++..+.++++. .|.+|+|...
T Consensus 149 ~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 149 LKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred HHHHHHHHhcCCceEEEEEECCCch
Confidence 33455555667774 4778887654
No 472
>PRK05973 replicative DNA helicase; Provisional
Probab=36.44 E-value=45 Score=33.47 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=30.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcE-EEEecCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV-VTCLRQP 112 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a-~~~lReP 112 (507)
++|.++||+| +-|.||||.+.=++.... +-|+++ +..+=|+
T Consensus 62 ~~Gsl~LIaG----~PG~GKT~lalqfa~~~a-~~Ge~vlyfSlEes 103 (237)
T PRK05973 62 KPGDLVLLGA----RPGHGKTLLGLELAVEAM-KSGRTGVFFTLEYT 103 (237)
T ss_pred CCCCEEEEEe----CCCCCHHHHHHHHHHHHH-hcCCeEEEEEEeCC
Confidence 6799999999 469999999988776552 447765 5555554
No 473
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=36.40 E-value=2.2e+02 Score=24.93 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=32.1
Q ss_pred cCCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aE--------------i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
-++|+|++.|+.....+.+ .+..++++++.+...++.|+ ++=|+|-.+|-+.+.
T Consensus 104 ~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~~~~v~~lf~~l~ 171 (175)
T cd01870 104 PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECS--AKTKEGVREVFEMAT 171 (175)
T ss_pred CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEec--cccCcCHHHHHHHHH
Confidence 3799999999976422211 13345666666764455554 444567766655544
No 474
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=36.36 E-value=83 Score=26.79 Aligned_cols=56 Identities=23% Similarity=0.220 Sum_probs=33.1
Q ss_pred HhccCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 446 TKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 446 ~~~fGvpvVVAiN~F~tDT~aEi~-~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++++++|+++++|+...-.++++. .+.+++...+.. +..++. .-|.|-.+|-+.+.
T Consensus 97 ~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~iSa--~~~~~~~~l~~~l~ 153 (158)
T cd01879 97 LLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVP-VVPTSA--RKGEGIDELKDAIA 153 (158)
T ss_pred HHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCC-eEEEEc--cCCCCHHHHHHHHH
Confidence 445799999999997753333222 234556666775 444433 33556666655543
No 475
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=36.27 E-value=80 Score=33.54 Aligned_cols=81 Identities=7% Similarity=-0.032 Sum_probs=49.1
Q ss_pred ehHHHhcC-CCCCccCCCCCchhccccCHHHHHHHhh--hHHHHHHHHhccCCcEE---EEecCCCCCCHHHHHHHHHHH
Q 010555 402 IRALKMHG-GGPQVVAGKPLDHAYLNENVALVEAGCV--NLARHIANTKAYGANVV---VAVNMFATDSKAELNAVRNAA 475 (507)
Q Consensus 402 vRALK~HG-G~~~~~~g~pL~~~~~~enl~al~~G~~--NL~~HIen~~~fGvpvV---VAiN~F~tDT~aEi~~v~~~~ 475 (507)
+.++|-+| +......| .+..+++.++.+.++.. ...+=|+.+++.+..+. -.|-=||.+|+++++...+++
T Consensus 235 l~~~~~~~~~~~~l~ig---lES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~I~G~PgET~e~~~~t~~fl 311 (430)
T TIGR01125 235 IDLMAEGPKVLPYLDIP---LQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTFIVGFPGETEEDFQELLDFV 311 (430)
T ss_pred HHHHhhCCcccCceEeC---CCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEEEEECCCCCHHHHHHHHHHH
Confidence 45555554 33433333 13445556666666532 34455666666543322 245568999999999999999
Q ss_pred HHcCCCeEEE
Q 010555 476 MAAGAFDAVV 485 (507)
Q Consensus 476 ~~~G~~~~~~ 485 (507)
++.+...+.+
T Consensus 312 ~~~~~~~~~~ 321 (430)
T TIGR01125 312 EEGQFDRLGA 321 (430)
T ss_pred HhcCCCEEee
Confidence 9999864433
No 476
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=36.27 E-value=1.9e+02 Score=26.41 Aligned_cols=53 Identities=9% Similarity=-0.008 Sum_probs=31.8
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.++|+|++.|+..--.+.+ .+...+++++.++. ++.++.-. |+|-.++-+.++
T Consensus 105 ~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SAk~--~~~v~~l~~~l~ 159 (190)
T cd04144 105 ADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCE-FIEASAKT--NVNVERAFYTLV 159 (190)
T ss_pred CCCCEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEecCCC--CCCHHHHHHHHH
Confidence 5799999999965422222 22345677777875 44444333 567666655544
No 477
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=36.25 E-value=48 Score=34.47 Aligned_cols=35 Identities=34% Similarity=0.446 Sum_probs=27.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
..|..+.||| |+|.|||++.--|.+-+. .-++..+
T Consensus 20 ~~~~~~fv~G----~~GtGKs~l~~~i~~~~~-~~~~~~~ 54 (364)
T PF05970_consen 20 EEGLNFFVTG----PAGTGKSFLIKAIIDYLR-SRGKKVL 54 (364)
T ss_pred cCCcEEEEEc----CCCCChhHHHHHHHHHhc-cccceEE
Confidence 4678999997 899999999999988883 4444443
No 478
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.15 E-value=31 Score=40.94 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.0
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qa 96 (507)
|++|+|+|||. .|+|||+++-.---|
T Consensus 20 P~~~l~v~TGv----SGSGKSSLafDtl~a 45 (924)
T TIGR00630 20 PRDKLVVITGL----SGSGKSSLAFDTIYA 45 (924)
T ss_pred CCCceEEEecC----CCCCchhHHHHHHHH
Confidence 78999999996 599999999775444
No 479
>PRK08727 hypothetical protein; Validated
Probab=36.08 E-value=26 Score=33.99 Aligned_cols=32 Identities=25% Similarity=0.527 Sum_probs=25.1
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a 105 (507)
...|+++| |.|.|||+.+.+++..+. .-|+++
T Consensus 41 ~~~l~l~G----~~G~GKThL~~a~~~~~~-~~~~~~ 72 (233)
T PRK08727 41 SDWLYLSG----PAGTGKTHLALALCAAAE-QAGRSS 72 (233)
T ss_pred CCeEEEEC----CCCCCHHHHHHHHHHHHH-HcCCcE
Confidence 34588887 579999999999999984 556654
No 480
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=36.08 E-value=28 Score=36.78 Aligned_cols=29 Identities=31% Similarity=0.324 Sum_probs=25.0
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a 105 (507)
+.|-|||.+ ||||||-=|++.| ...|.++
T Consensus 103 ~~I~ITGT~------GKTTTt~li~~iL-~~~g~~~ 131 (448)
T TIGR01081 103 WVLAVAGTH------GKTTTASMLAWVL-EQCGLKP 131 (448)
T ss_pred CEEEEECCC------cHHHHHHHHHHHH-HhcCCCC
Confidence 389999986 9999999999999 4778775
No 481
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=35.89 E-value=2.6e+02 Score=27.24 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=42.2
Q ss_pred ccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCC---CCC-H-------HHHHHHHHHHHHcCCCeEEEccc
Q 010555 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMFA---TDS-K-------AELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 426 ~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~---tDT-~-------aEi~~v~~~~~~~G~~~~~~s~~ 488 (507)
.+|.+.-++.+..+++.|+..+.+|.++|+. .-+. ..+ + +.+..+.+.+++.|+. +.+-++
T Consensus 88 ~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~-i~iE~~ 159 (283)
T PRK13209 88 SEDDAVRAQALEIMRKAIQLAQDLGIRVIQL-AGYDVYYEQANNETRRRFIDGLKESVELASRASVT-LAFEIM 159 (283)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE-CCccccccccHHHHHHHHHHHHHHHHHHHHHhCCE-EEEeec
Confidence 3455667788999999999999999998874 3222 111 2 2345566777788996 666555
No 482
>PRK12288 GTPase RsgA; Reviewed
Probab=35.84 E-value=1.1e+02 Score=32.36 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=39.2
Q ss_pred hHHHHHHHHhccCCcEEEEecCCCCCCHHH---HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTKAYGANVVVAVNMFATDSKAE---LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN~F~tDT~aE---i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.|.+-+..+...|+|+|+++|+-.-.+++| ++...+..++.|.. +... =+.=|+|-.+|.+.+.
T Consensus 138 ~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~-v~~v--SA~tg~GideL~~~L~ 204 (347)
T PRK12288 138 IIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYR-VLMV--SSHTGEGLEELEAALT 204 (347)
T ss_pred HHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCe-EEEE--eCCCCcCHHHHHHHHh
Confidence 444445555678999999999987755544 33334444567875 3322 2344567777776553
No 483
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=35.70 E-value=1.7e+02 Score=30.47 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=35.9
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHH-HHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSKAELNAVR-NAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aEi~~v~-~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
...|++|++|+..-..+++++.+. +++++.+.. ++.+++ .=|+|-.+|-+.+.
T Consensus 272 ~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~-vi~iSA--ktg~GI~eL~~~I~ 325 (329)
T TIGR02729 272 AEKPRIVVLNKIDLLDEEELAELLKELKKALGKP-VFPISA--LTGEGLDELLYALA 325 (329)
T ss_pred ccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCc-EEEEEc--cCCcCHHHHHHHHH
Confidence 478999999998876666655554 455566765 554444 44688888877664
No 484
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.53 E-value=42 Score=33.85 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=30.7
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
.|+.||||+ +-+|-|| ++.++| +.-|-..++.-|.|
T Consensus 6 aG~~vlvTg---agaGIG~-----~~v~~L-a~aGA~ViAvaR~~ 41 (245)
T KOG1207|consen 6 AGVIVLVTG---AGAGIGK-----EIVLSL-AKAGAQVIAVARNE 41 (245)
T ss_pred cceEEEeec---ccccccH-----HHHHHH-HhcCCEEEEEecCH
Confidence 599999999 6777777 677999 68999999999875
No 485
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=35.50 E-value=2.3e+02 Score=25.28 Aligned_cols=51 Identities=25% Similarity=0.225 Sum_probs=31.4
Q ss_pred cCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCC-CCH----------HH-HHHHHHHHHHcCCC
Q 010555 427 ENVALVEAGCVNLARHIANTKAYGANVVVAVNMFAT-DSK----------AE-LNAVRNAAMAAGAF 481 (507)
Q Consensus 427 enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~t-DT~----------aE-i~~v~~~~~~~G~~ 481 (507)
.+.+.+++.+..+.+++. ..+.+||+ +.-++. ... ++ -+.+++.|++.|+.
T Consensus 85 ~~~~~~~~~~~~~i~~i~---~~~~~vil-~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~ 147 (185)
T cd01832 85 TDPDTYRADLEEAVRRLR---AAGARVVV-FTIPDPAVLEPFRRRVRARLAAYNAVIRAVAARYGAV 147 (185)
T ss_pred CCHHHHHHHHHHHHHHHH---hCCCEEEE-ecCCCccccchhHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 456777776666655554 66776555 665554 111 22 24578889999885
No 486
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=35.44 E-value=1.3e+02 Score=30.86 Aligned_cols=45 Identities=13% Similarity=0.021 Sum_probs=33.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCch
Q 010555 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 494 (507)
Q Consensus 450 GvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGe 494 (507)
|+|+=|.|--=-=+.++||..+.+.|.++|+..+--|+.|..+|.
T Consensus 131 ~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gA 175 (257)
T PRK05283 131 NVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKVPVNA 175 (257)
T ss_pred CceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC
Confidence 577767666432333567999999999999986777899987764
No 487
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=35.35 E-value=25 Score=34.76 Aligned_cols=44 Identities=25% Similarity=0.443 Sum_probs=35.1
Q ss_pred CCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhc-CCCCCCce
Q 010555 183 NKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFAR-LDIDPASI 229 (507)
Q Consensus 183 ~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~-L~IDp~~I 229 (507)
.+.+||+|+..|.+.|++ .=..-..|.|+++.+++. |++.|+.|
T Consensus 50 ~~~kk~Rlt~eQ~~~LE~---~F~~~~~L~p~~K~~LAk~LgL~pRQV 94 (198)
T KOG0483|consen 50 GKGKKRRLTSEQVKFLEK---SFESEKKLEPERKKKLAKELGLQPRQV 94 (198)
T ss_pred cccccccccHHHHHHhHH---hhccccccChHHHHHHHHhhCCChhHH
Confidence 467899999999999987 222344588999888864 99999887
No 488
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=35.08 E-value=32 Score=31.07 Aligned_cols=25 Identities=32% Similarity=0.218 Sum_probs=19.2
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+-|.||||.+.-|++.+. ..|.+++
T Consensus 7 ~~GsGKSTla~~L~~~l~-~~g~~~~ 31 (149)
T cd02027 7 LSGSGKSTIARALEEKLF-QRGRPVY 31 (149)
T ss_pred CCCCCHHHHHHHHHHHHH-HcCCCEE
Confidence 459999999999999983 4555443
No 489
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=34.87 E-value=1.2e+02 Score=26.64 Aligned_cols=55 Identities=9% Similarity=-0.025 Sum_probs=34.8
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT-~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
-++|++|+.|+-.-.. ....+.++++|++.+...+..+.. +-|+|-.++=+.+++
T Consensus 113 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa--~~~~~v~~~~~~~~~ 168 (170)
T cd04116 113 ESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSA--KDATNVAAAFEEAVR 168 (170)
T ss_pred CCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEEC--CCCCCHHHHHHHHHh
Confidence 5799999999865321 112345678888887543554444 456777777665543
No 490
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=34.82 E-value=36 Score=36.20 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=26.2
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 66 ~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
++..++|-|||-+ |||||+-=|.+.| ...|+.
T Consensus 97 ~~~~~vI~VTGSn------GKTTT~~ml~~iL-~~~g~~ 128 (453)
T PRK10773 97 QVPARVVALTGSS------GKTSVKEMTAAIL-RQCGNT 128 (453)
T ss_pred cCCCCEEEEcCCC------chHHHHHHHHHHH-HhcCcc
Confidence 3457899999975 9999999999999 466763
No 491
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.82 E-value=1.5e+02 Score=31.76 Aligned_cols=131 Identities=13% Similarity=0.096 Sum_probs=80.1
Q ss_pred hHHHHHHHHHhcCCCCeEEeeccc---ccccc-ccccccc-----------ccccCCCCcceEEEEeeehHHHhcC-CCC
Q 010555 349 SIVADKIALKLVGPGGFVVTEAGF---GADIG-AEKFMNI-----------KCRYSGLTPQCAVIVATIRALKMHG-GGP 412 (507)
Q Consensus 349 SviAtk~ALklag~~dyVVTEAGF---GaDlG-aEKF~dI-----------KCr~sgl~PdavVlVaTvRALK~HG-G~~ 412 (507)
.|++.=-.|.-.|...+++|-.=| |.|++ .++|.++ .-|.+-..|+.+- =-.++.|+-++ +.+
T Consensus 157 ~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~-~ell~~l~~~~~~~~ 235 (418)
T PRK14336 157 EIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPKDIS-QKLIDAMAHLPKVCR 235 (418)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChhhcC-HHHHHHHHhcCccCC
Confidence 355443344434444567775544 44653 2455552 2344445565431 11344555443 466
Q ss_pred CccCCCCCchhccccCHHHHHHH--hhhHHHHHHHHhcc--CCcEE-EEecCCCCCCHHHHHHHHHHHHHcCCCeE
Q 010555 413 QVVAGKPLDHAYLNENVALVEAG--CVNLARHIANTKAY--GANVV-VAVNMFATDSKAELNAVRNAAMAAGAFDA 483 (507)
Q Consensus 413 ~~~~g~pL~~~~~~enl~al~~G--~~NL~~HIen~~~f--GvpvV-VAiN~F~tDT~aEi~~v~~~~~~~G~~~~ 483 (507)
....|- +..+++-|+.+.+| ...+.+-|+.+++. |+.+. =.|--||.+|+++++...+++++.+...+
T Consensus 236 ~l~lgl---QSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~tl~fi~~~~~~~~ 308 (418)
T PRK14336 236 SLSLPV---QAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQSYKLMADIGYDAI 308 (418)
T ss_pred ceecCC---CcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEE
Confidence 555552 44556678888887 45677788888887 77543 24667999999999999999999887643
No 492
>PLN02540 methylenetetrahydrofolate reductase
Probab=34.79 E-value=39 Score=38.20 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=66.3
Q ss_pred CeEEeecccccccccccccccccccCCCCcceE---EEEeeehHHHhcCCCCCccCCCCCchhccc------cCHHH-HH
Q 010555 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCA---VIVATIRALKMHGGGPQVVAGKPLDHAYLN------ENVAL-VE 433 (507)
Q Consensus 364 dyVVTEAGFGaDlGaEKF~dIKCr~sgl~Pdav---VlVaTvRALK~HGG~~~~~~g~pL~~~~~~------enl~a-l~ 433 (507)
||+||-.-|.+|. +++|++ +||..|+.--.+ .-+.+.+.+++.-.. .|-.+|+++.+ .|-++ .+
T Consensus 171 dFiITQlfFD~d~-f~~f~~-~~r~~Gi~vPIipGImPI~S~k~l~r~~~l----~Gi~IP~~i~~rLe~~kddde~v~~ 244 (565)
T PLN02540 171 DLIITQLFYDTDI-FLKFVN-DCRQIGITCPIVPGIMPINNYKGFLRMTGF----CKTKIPAEITAALEPIKDNDEAVKA 244 (565)
T ss_pred CEEeeccccCHHH-HHHHHH-HHHhcCCCCCEEeeecccCCHHHHHHHHhc----cCCcCCHHHHHHHHhcCCCHHHHHH
Confidence 7999999999986 678887 899999753222 123445555433223 34456666544 44455 34
Q ss_pred HHhhhHHHHHHHHhccCCcEE--EEecCCCCCCHHHHHHHHHHHHHcCC
Q 010555 434 AGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGA 480 (507)
Q Consensus 434 ~G~~NL~~HIen~~~fGvpvV--VAiN~F~tDT~aEi~~v~~~~~~~G~ 480 (507)
.|++-....|+.+...|++=| -++|+. +.+.+.+++.|.
T Consensus 245 ~Gieia~e~~~~L~~~Gv~GiHfYTlN~e--------~~v~~ILe~lgl 285 (565)
T PLN02540 245 YGIHLGTEMCKKILAHGIKGLHLYTLNLE--------KSALAILMNLGL 285 (565)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECccCCh--------HHHHHHHHHcCC
Confidence 699888889999999986632 344443 345556666665
No 493
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=34.68 E-value=30 Score=38.03 Aligned_cols=35 Identities=26% Similarity=0.188 Sum_probs=26.4
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.+.|++.| |-|.|||||..-|+-.|. .-|++..++
T Consensus 241 ~~vI~LVG----ptGvGKTTTiaKLA~~L~-~~GkkVglI 275 (436)
T PRK11889 241 VQTIALIG----PTGVGKTTTLAKMAWQFH-GKKKTVGFI 275 (436)
T ss_pred CcEEEEEC----CCCCcHHHHHHHHHHHHH-HcCCcEEEE
Confidence 46677766 369999999999998884 567666544
No 494
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=34.65 E-value=28 Score=34.31 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=20.0
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
-++++| |.|.||||++..+++.+.
T Consensus 38 ~lll~G----p~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQG----PPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEEC----CCCCCHHHHHHHHHHHhc
Confidence 466765 779999999999999884
No 495
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=34.58 E-value=9.9 Score=43.87 Aligned_cols=73 Identities=23% Similarity=0.221 Sum_probs=42.5
Q ss_pred hhccccCHHHHHH------Hhh-hHHHHHHHHhccCCc----EEEEecCCCCCCHHHHHHHHHH-HHHcCCCeEEEcccc
Q 010555 422 HAYLNENVALVEA------GCV-NLARHIANTKAYGAN----VVVAVNMFATDSKAELNAVRNA-AMAAGAFDAVVCSHH 489 (507)
Q Consensus 422 ~~~~~enl~al~~------G~~-NL~~HIen~~~fGvp----vVVAiN~F~tDT~aEi~~v~~~-~~~~G~~~~~~s~~w 489 (507)
.+...+|-.++-. |++ .|.+|-+-+.--+=- ..|..+.-.+-..+-++.|++. ++..|..--+-++.|
T Consensus 573 ~~~~~~~W~~~~~~~~~k~g~a~~la~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~kl~~al~~~~g~~~~~~~~~~ 652 (709)
T PRK08691 573 PEFSTENWAAIVRHFARKLGAAQMPAQHSAWTEYHPDTGLMVLAMTAEARATADKKRLDKIRDTLAQAYGLQLTLQTQDW 652 (709)
T ss_pred CccccCchHHHHHHhhhhhhHHHHHHhhhhheeecCCcceEEEecChHHhhhhhHHHHHHHHHHHHHHhCCCeEEEEeec
Confidence 3456778888877 665 567776655433322 2344443334445667778765 445677644556778
Q ss_pred ccCchh
Q 010555 490 AHGGKG 495 (507)
Q Consensus 490 a~GGeG 495 (507)
. +|.|
T Consensus 653 ~-~~~~ 657 (709)
T PRK08691 653 R-DEAG 657 (709)
T ss_pred c-cccc
Confidence 6 4444
No 496
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=34.44 E-value=34 Score=34.21 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=27.9
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
+++=++.+| |.|.|||.++++++..|. +-|.++ ..+.-|
T Consensus 104 ~~~nl~l~G----~~G~GKThLa~Ai~~~l~-~~g~sv-~f~~~~ 142 (254)
T COG1484 104 RGENLVLLG----PPGVGKTHLAIAIGNELL-KAGISV-LFITAP 142 (254)
T ss_pred cCCcEEEEC----CCCCcHHHHHHHHHHHHH-HcCCeE-EEEEHH
Confidence 455555555 789999999999999995 666664 344433
No 497
>CHL00071 tufA elongation factor Tu
Probab=34.36 E-value=78 Score=33.51 Aligned_cols=43 Identities=26% Similarity=0.189 Sum_probs=30.2
Q ss_pred hHHHHHHHHhccCCc-EEEEecCCCCCCHHHH-----HHHHHHHHHcCC
Q 010555 438 NLARHIANTKAYGAN-VVVAVNMFATDSKAEL-----NAVRNAAMAAGA 480 (507)
Q Consensus 438 NL~~HIen~~~fGvp-vVVAiN~F~tDT~aEi-----~~v~~~~~~~G~ 480 (507)
.-..|+..++++|+| +||++|+...-+++|+ +.+.++.+..+.
T Consensus 115 qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 115 QTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 566789999999999 7799999876444442 245555555553
No 498
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=34.33 E-value=52 Score=34.16 Aligned_cols=41 Identities=17% Similarity=0.145 Sum_probs=27.1
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
.++-|+|+| |-|.||||+...|.+.+-..-....++++=+|
T Consensus 147 ~~~~ilI~G----~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~ 187 (319)
T PRK13894 147 AHRNILVIG----GTGSGKTTLVNAIINEMVIQDPTERVFIIEDT 187 (319)
T ss_pred cCCeEEEEC----CCCCCHHHHHHHHHHhhhhcCCCceEEEEcCC
Confidence 467889987 45999999999998876211223345555443
No 499
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=34.28 E-value=90 Score=28.71 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=29.6
Q ss_pred hHHHHHHHHhccCCcEEEE--ecCCCCCCHHHHHHHHHHHHHcC
Q 010555 438 NLARHIANTKAYGANVVVA--VNMFATDSKAELNAVRNAAMAAG 479 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVA--iN~F~tDT~aEi~~v~~~~~~~G 479 (507)
+..+-|+.+++.|+++.|. ++....| ++|++.+.+++++.|
T Consensus 141 ~~~~~i~~l~~~gi~~~i~~~v~~~~~~-~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 141 NILKSLEILLRSGIPFELRTTVHRGFLD-EEDLAEIATRIKENG 183 (191)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEeCCCCC-HHHHHHHHHHhccCC
Confidence 4555566677778876655 4455555 789999999998887
No 500
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=34.22 E-value=1.5e+02 Score=28.84 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=56.4
Q ss_pred CCchhccccCHHHHHHHhhhHHHHHHHH--------------------hccCCcEEEEe--cCCCCCCHHHHHHHHHHHH
Q 010555 419 PLDHAYLNENVALVEAGCVNLARHIANT--------------------KAYGANVVVAV--NMFATDSKAELNAVRNAAM 476 (507)
Q Consensus 419 pL~~~~~~enl~al~~G~~NL~~HIen~--------------------~~fGvpvVVAi--N~F~tDT~aEi~~v~~~~~ 476 (507)
|--+++-++|.+.+.+-+..|.+.++.. +.||+.++-.+ +.-..=|.+++..+.+.++
T Consensus 117 P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~~~~~~v~~h~~~~Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik 196 (256)
T PF01297_consen 117 PANKDYYEKNAEKYLKELDELDAEIKEKLAKLPGRPVVVYHDAFQYFAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIK 196 (256)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSGGEEEEEESTTHHHHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCeEEEEChHHHHHHHhcCCceeeeeccccccCCCHHHHHHHHHHhh
Confidence 3345677788999999999888887754 34666666666 5555668999999999999
Q ss_pred HcCCCeEEEccccccCchhhHHHHH
Q 010555 477 AAGAFDAVVCSHHAHGGKGAFKEPV 501 (507)
Q Consensus 477 ~~G~~~~~~s~~wa~GGeGa~~LA~ 501 (507)
+.+++ +++++.+... +-+..||+
T Consensus 197 ~~~v~-~i~~e~~~~~-~~~~~la~ 219 (256)
T PF01297_consen 197 ENKVK-CIFTEPQFSS-KLAEALAK 219 (256)
T ss_dssp HTT-S-EEEEETTS-T-HHHHHHHH
T ss_pred hcCCc-EEEecCCCCh-HHHHHHHH
Confidence 99997 7888776543 34455554
Done!