Query 010555
Match_columns 507
No_of_seqs 221 out of 985
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 09:20:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3do6_A Formate--tetrahydrofola 100.0 1E-214 4E-219 1652.8 31.0 413 28-505 2-414 (543)
2 3pzx_A Formate--tetrahydrofola 100.0 3E-203 1E-207 1574.3 29.3 425 14-505 2-426 (557)
3 2eo2_A Adult MALE hypothalamus 100.0 5.8E-31 2E-35 213.8 5.4 70 162-232 2-71 (71)
4 3cio_A ETK, tyrosine-protein k 97.2 0.00017 5.9E-09 69.8 3.7 52 67-122 102-156 (299)
5 3bfv_A CAPA1, CAPB2, membrane 97.1 0.00024 8.1E-09 67.9 3.8 52 67-122 80-134 (271)
6 3la6_A Tyrosine-protein kinase 96.8 0.00055 1.9E-08 66.2 3.0 52 67-122 90-144 (286)
7 3zq6_A Putative arsenical pump 96.0 0.004 1.4E-07 60.6 3.7 53 67-123 10-65 (324)
8 1hyq_A MIND, cell division inh 95.9 0.0039 1.3E-07 57.2 3.1 50 69-122 2-54 (263)
9 1g3q_A MIND ATPase, cell divis 95.8 0.0042 1.4E-07 55.7 3.0 49 69-121 2-53 (237)
10 3q9l_A Septum site-determining 95.8 0.0041 1.4E-07 56.4 2.7 50 69-122 2-54 (260)
11 3ea0_A ATPase, para family; al 95.5 0.011 3.7E-07 53.2 4.3 38 67-108 2-40 (245)
12 3end_A Light-independent proto 95.2 0.014 4.6E-07 55.3 4.3 40 67-111 39-78 (307)
13 1byi_A Dethiobiotin synthase; 95.1 0.01 3.5E-07 52.9 2.7 34 70-107 2-35 (224)
14 2woo_A ATPase GET3; tail-ancho 95.1 0.0089 3.1E-07 58.5 2.5 51 68-123 17-70 (329)
15 4tmk_A Protein (thymidylate ki 94.9 0.018 6.1E-07 53.7 4.0 41 68-113 2-42 (213)
16 2ph1_A Nucleotide-binding prot 94.9 0.024 8.2E-07 52.7 4.8 38 67-108 16-53 (262)
17 3k9g_A PF-32 protein; ssgcid, 94.8 0.021 7.1E-07 52.7 4.0 37 67-108 25-61 (267)
18 1wcv_1 SOJ, segregation protei 94.6 0.017 5.8E-07 53.4 3.1 38 67-108 4-41 (257)
19 2woj_A ATPase GET3; tail-ancho 94.6 0.016 5.4E-07 57.7 3.0 51 68-123 16-71 (354)
20 3lv8_A DTMP kinase, thymidylat 94.5 0.028 9.4E-07 53.5 4.2 43 67-114 25-67 (236)
21 3ld9_A DTMP kinase, thymidylat 94.3 0.023 7.9E-07 53.8 3.3 45 66-115 18-63 (223)
22 2wwf_A Thymidilate kinase, put 94.2 0.036 1.2E-06 48.7 4.2 47 67-119 8-54 (212)
23 1nn5_A Similar to deoxythymidy 94.2 0.044 1.5E-06 48.1 4.6 43 67-115 7-49 (215)
24 3ug7_A Arsenical pump-driving 94.1 0.039 1.3E-06 54.5 4.5 53 67-123 23-77 (349)
25 3igf_A ALL4481 protein; two-do 93.4 0.016 5.4E-07 58.9 0.4 54 70-132 3-58 (374)
26 4edh_A DTMP kinase, thymidylat 93.3 0.061 2.1E-06 49.9 4.2 40 68-113 5-44 (213)
27 2oze_A ORF delta'; para, walke 93.2 0.065 2.2E-06 50.2 4.2 39 68-108 33-71 (298)
28 3fkq_A NTRC-like two-domain pr 93.2 0.065 2.2E-06 53.0 4.4 51 67-121 141-193 (373)
29 4dzz_A Plasmid partitioning pr 93.0 0.065 2.2E-06 46.7 3.6 35 70-108 2-36 (206)
30 3fwy_A Light-independent proto 92.9 0.085 2.9E-06 51.9 4.6 49 67-120 46-94 (314)
31 1ihu_A Arsenical pump-driving 92.7 0.049 1.7E-06 56.8 2.8 50 68-123 7-59 (589)
32 3kjh_A CO dehydrogenase/acetyl 92.6 0.034 1.2E-06 49.4 1.4 40 81-121 8-49 (254)
33 3v9p_A DTMP kinase, thymidylat 92.4 0.097 3.3E-06 49.5 4.2 44 67-116 23-70 (227)
34 3io3_A DEHA2D07832P; chaperone 92.4 0.1 3.5E-06 52.2 4.5 52 67-123 16-71 (348)
35 1cp2_A CP2, nitrogenase iron p 92.4 0.083 2.8E-06 48.5 3.6 34 70-108 2-35 (269)
36 3iqw_A Tail-anchored protein t 92.3 0.09 3.1E-06 52.2 4.0 48 70-122 17-66 (334)
37 3ez2_A Plasmid partition prote 92.3 0.11 3.9E-06 51.2 4.7 39 67-108 106-149 (398)
38 3ez9_A Para; DNA binding, wing 92.2 0.089 3E-06 52.2 3.8 39 67-108 109-152 (403)
39 2afh_E Nitrogenase iron protei 92.1 0.091 3.1E-06 49.2 3.5 34 70-108 3-36 (289)
40 3of5_A Dethiobiotin synthetase 92.1 0.061 2.1E-06 50.3 2.3 37 70-112 5-41 (228)
41 3cwq_A Para family chromosome 92.0 0.12 4E-06 46.9 4.0 33 70-107 1-33 (209)
42 3qxc_A Dethiobiotin synthetase 91.6 0.14 4.7E-06 49.0 4.2 37 67-107 19-55 (242)
43 2xj4_A MIPZ; replication, cell 91.3 0.13 4.5E-06 48.5 3.7 36 69-108 4-39 (286)
44 3fgn_A Dethiobiotin synthetase 91.0 0.09 3.1E-06 50.5 2.3 43 60-107 18-60 (251)
45 2xxa_A Signal recognition part 91.0 0.16 5.6E-06 52.2 4.3 36 68-108 99-135 (433)
46 1zu4_A FTSY; GTPase, signal re 90.8 0.18 6E-06 49.8 4.3 37 67-108 103-139 (320)
47 2plr_A DTMP kinase, probable t 90.5 0.21 7.3E-06 43.4 4.0 38 68-112 3-40 (213)
48 2z0h_A DTMP kinase, thymidylat 90.4 0.21 7.2E-06 43.1 3.9 38 71-114 2-39 (197)
49 2qor_A Guanylate kinase; phosp 89.9 0.19 6.5E-06 44.8 3.3 47 67-117 10-56 (204)
50 2yvu_A Probable adenylyl-sulfa 89.1 0.38 1.3E-05 41.8 4.5 42 60-106 4-45 (186)
51 3tmk_A Thymidylate kinase; pho 89.0 0.25 8.6E-06 46.3 3.6 39 68-115 4-42 (216)
52 2px0_A Flagellar biosynthesis 88.8 0.37 1.3E-05 46.8 4.7 38 67-108 103-140 (296)
53 1vma_A Cell division protein F 88.0 0.38 1.3E-05 47.2 4.2 37 67-108 102-138 (306)
54 3pg5_A Uncharacterized protein 87.6 0.24 8.1E-06 48.9 2.5 35 70-108 2-36 (361)
55 3kl4_A SRP54, signal recogniti 87.5 0.39 1.3E-05 49.8 4.1 35 68-107 96-130 (433)
56 1xjc_A MOBB protein homolog; s 87.0 0.58 2E-05 42.7 4.5 39 70-113 5-43 (169)
57 2ocp_A DGK, deoxyguanosine kin 86.8 0.35 1.2E-05 44.1 3.0 39 68-116 1-39 (241)
58 2r8r_A Sensor protein; KDPD, P 86.7 0.68 2.3E-05 44.6 5.0 42 67-112 3-44 (228)
59 3tau_A Guanylate kinase, GMP k 86.5 0.36 1.2E-05 43.5 2.8 45 67-115 6-50 (208)
60 3dm5_A SRP54, signal recogniti 86.3 0.54 1.8E-05 49.1 4.4 36 68-108 99-134 (443)
61 2b8t_A Thymidine kinase; deoxy 86.3 0.56 1.9E-05 44.3 4.1 44 67-117 10-53 (223)
62 4hlc_A DTMP kinase, thymidylat 86.1 0.49 1.7E-05 43.5 3.6 38 69-113 2-39 (205)
63 4eaq_A DTMP kinase, thymidylat 86.0 0.59 2E-05 43.3 4.1 43 67-116 24-66 (229)
64 2v54_A DTMP kinase, thymidylat 85.0 0.49 1.7E-05 41.2 2.8 41 68-116 3-43 (204)
65 2obn_A Hypothetical protein; s 84.8 1.8 6.2E-05 44.0 7.3 96 389-505 250-348 (349)
66 1ls1_A Signal recognition part 84.5 0.73 2.5E-05 44.6 4.1 36 68-108 97-132 (295)
67 1qhx_A CPT, protein (chloramph 84.3 0.49 1.7E-05 40.4 2.5 26 69-98 3-28 (178)
68 2efe_B Small GTP-binding prote 84.0 2.2 7.5E-05 35.6 6.4 65 438-505 102-171 (181)
69 1j8m_F SRP54, signal recogniti 84.0 0.91 3.1E-05 44.2 4.6 35 69-108 98-132 (297)
70 3a00_A Guanylate kinase, GMP k 83.9 0.83 2.8E-05 40.1 3.9 44 69-116 1-44 (186)
71 2ffh_A Protein (FFH); SRP54, s 83.7 0.86 2.9E-05 47.1 4.5 36 68-108 97-132 (425)
72 2v3c_C SRP54, signal recogniti 83.0 0.77 2.6E-05 47.2 3.8 35 69-108 99-133 (432)
73 2rhm_A Putative kinase; P-loop 82.4 0.73 2.5E-05 39.6 2.8 27 67-97 3-29 (193)
74 1a7j_A Phosphoribulokinase; tr 82.3 1.1 3.9E-05 43.1 4.4 27 68-98 4-30 (290)
75 1kht_A Adenylate kinase; phosp 82.0 0.81 2.8E-05 39.0 3.0 26 69-98 3-28 (192)
76 2pbr_A DTMP kinase, thymidylat 82.0 1.4 4.6E-05 37.7 4.4 38 70-113 1-38 (195)
77 3a4m_A L-seryl-tRNA(SEC) kinas 81.9 0.96 3.3E-05 42.2 3.7 34 68-106 3-36 (260)
78 1xx6_A Thymidine kinase; NESG, 81.3 1.3 4.4E-05 40.7 4.2 46 67-119 6-51 (191)
79 1np6_A Molybdopterin-guanine d 80.9 1.5 5.2E-05 39.5 4.5 38 70-112 7-44 (174)
80 3t1o_A Gliding protein MGLA; G 80.8 4.2 0.00014 34.2 6.9 68 434-504 117-187 (198)
81 1e6c_A Shikimate kinase; phosp 80.7 0.77 2.6E-05 38.8 2.3 25 70-98 3-27 (173)
82 3hjn_A DTMP kinase, thymidylat 80.6 0.85 2.9E-05 41.5 2.7 37 71-113 2-38 (197)
83 2orw_A Thymidine kinase; TMTK, 80.1 1.5 5.1E-05 39.4 4.1 43 69-118 3-45 (184)
84 1kgd_A CASK, peripheral plasma 79.8 1.2 4.1E-05 39.0 3.3 44 68-115 4-47 (180)
85 3trf_A Shikimate kinase, SK; a 79.7 0.95 3.2E-05 38.9 2.6 26 68-97 4-29 (185)
86 2j37_W Signal recognition part 79.7 1.3 4.3E-05 46.9 4.0 35 69-108 101-135 (504)
87 2pez_A Bifunctional 3'-phospho 79.6 1.4 4.7E-05 38.0 3.6 35 67-106 3-37 (179)
88 2c95_A Adenylate kinase 1; tra 79.0 1.1 3.8E-05 38.5 2.9 27 68-98 8-34 (196)
89 1nks_A Adenylate kinase; therm 78.8 1.7 5.7E-05 37.0 3.9 30 70-104 2-31 (194)
90 1yrb_A ATP(GTP)binding protein 78.7 1.3 4.4E-05 40.1 3.3 42 69-113 11-52 (262)
91 3cm0_A Adenylate kinase; ATP-b 78.7 0.94 3.2E-05 38.9 2.3 26 68-97 3-28 (186)
92 3kb2_A SPBC2 prophage-derived 78.6 1.1 3.6E-05 37.6 2.5 24 70-97 2-25 (173)
93 1gtv_A TMK, thymidylate kinase 78.5 0.59 2E-05 40.9 1.0 38 70-113 1-38 (214)
94 3lnc_A Guanylate kinase, GMP k 78.5 1.1 3.8E-05 40.4 2.8 46 67-117 25-71 (231)
95 2j9r_A Thymidine kinase; TK1, 78.2 2 6.8E-05 40.9 4.6 46 67-119 26-71 (214)
96 2vli_A Antibiotic resistance p 78.1 1 3.6E-05 38.4 2.4 27 68-98 4-30 (183)
97 1ihu_A Arsenical pump-driving 77.9 1.6 5.3E-05 45.6 4.1 49 68-120 325-375 (589)
98 2yc2_C IFT27, small RAB-relate 77.8 2.8 9.7E-05 35.7 5.0 66 437-504 113-187 (208)
99 2nzj_A GTP-binding protein REM 77.7 5.6 0.00019 32.8 6.7 65 438-505 95-165 (175)
100 1lvg_A Guanylate kinase, GMP k 77.6 1.4 4.7E-05 39.5 3.1 45 68-116 3-47 (198)
101 3uie_A Adenylyl-sulfate kinase 77.6 1.3 4.5E-05 39.1 3.0 33 67-104 23-55 (200)
102 3vaa_A Shikimate kinase, SK; s 77.4 1.4 4.6E-05 39.1 3.0 27 67-97 23-49 (199)
103 2gf9_A RAS-related protein RAB 77.4 2.4 8.3E-05 36.2 4.5 65 438-505 112-181 (189)
104 3e1s_A Exodeoxyribonuclease V, 76.9 1.8 6.3E-05 45.8 4.3 36 68-108 203-238 (574)
105 3ney_A 55 kDa erythrocyte memb 76.6 1.8 6.1E-05 40.3 3.7 45 68-116 18-62 (197)
106 2fu5_C RAS-related protein RAB 76.4 3.2 0.00011 34.9 4.9 64 438-504 98-166 (183)
107 1z0f_A RAB14, member RAS oncog 76.1 3.9 0.00013 33.7 5.3 63 439-504 109-173 (179)
108 2j41_A Guanylate kinase; GMP, 75.6 1.7 5.9E-05 37.6 3.1 27 67-97 4-30 (207)
109 1g16_A RAS-related protein SEC 75.6 5.6 0.00019 32.5 6.0 54 448-504 106-160 (170)
110 3tkl_A RAS-related protein RAB 75.4 6.2 0.00021 33.4 6.4 59 443-504 114-174 (196)
111 1z06_A RAS-related protein RAB 75.2 4.6 0.00016 34.4 5.7 57 448-505 125-184 (189)
112 3iij_A Coilin-interacting nucl 75.1 1.5 5.3E-05 37.6 2.6 26 68-97 10-35 (180)
113 1knq_A Gluconate kinase; ALFA/ 75.0 1.9 6.6E-05 36.8 3.2 27 67-97 6-32 (175)
114 3q72_A GTP-binding protein RAD 74.8 9.1 0.00031 31.3 7.2 66 437-505 89-160 (166)
115 1m7g_A Adenylylsulfate kinase; 74.8 2.6 8.9E-05 37.6 4.1 36 67-106 23-58 (211)
116 4eun_A Thermoresistant glucoki 74.6 1.8 6.2E-05 38.3 3.0 27 67-97 27-53 (200)
117 3jvv_A Twitching mobility prot 74.5 2.1 7.1E-05 42.9 3.7 41 68-113 122-162 (356)
118 1tev_A UMP-CMP kinase; ploop, 74.4 1.6 5.4E-05 37.2 2.5 25 69-97 3-27 (196)
119 3c5h_A Glucocorticoid receptor 74.2 7.9 0.00027 35.8 7.4 53 449-504 197-250 (255)
120 3bos_A Putative DNA replicatio 73.8 3 0.0001 36.3 4.2 33 67-104 50-82 (242)
121 3bc1_A RAS-related protein RAB 73.6 5.9 0.0002 33.0 5.8 64 438-504 111-180 (195)
122 2bwj_A Adenylate kinase 5; pho 73.6 1.9 6.4E-05 37.2 2.8 26 68-97 11-36 (199)
123 3kkq_A RAS-related protein M-R 73.1 10 0.00036 31.7 7.2 57 446-505 119-178 (183)
124 1gvn_B Zeta; postsegregational 73.1 2.2 7.5E-05 40.9 3.4 27 67-97 31-57 (287)
125 1kag_A SKI, shikimate kinase I 73.0 1.6 5.4E-05 37.0 2.2 25 69-97 4-28 (173)
126 2a9k_A RAS-related protein RAL 73.0 3.8 0.00013 34.1 4.5 54 449-505 122-177 (187)
127 3con_A GTPase NRAS; structural 73.0 9.5 0.00032 32.2 7.0 53 449-504 125-178 (190)
128 3bdk_A D-mannonate dehydratase 72.9 6.5 0.00022 40.1 7.0 25 432-456 99-123 (386)
129 1of1_A Thymidine kinase; trans 72.7 1.5 5E-05 45.1 2.2 38 67-112 47-84 (376)
130 3c5c_A RAS-like protein 12; GD 72.7 4.2 0.00014 35.0 4.8 55 449-505 126-182 (187)
131 1qf9_A UMP/CMP kinase, protein 72.7 2.3 7.8E-05 36.1 3.1 26 68-97 5-30 (194)
132 3clv_A RAB5 protein, putative; 72.6 6.9 0.00024 32.6 6.0 64 438-504 134-199 (208)
133 2qmh_A HPR kinase/phosphorylas 72.3 1.4 4.8E-05 42.1 1.8 40 68-111 33-72 (205)
134 3q85_A GTP-binding protein REM 72.3 7.7 0.00026 31.8 6.1 66 436-504 91-162 (169)
135 2g6b_A RAS-related protein RAB 72.2 10 0.00036 31.4 7.0 55 447-504 113-169 (180)
136 1ukz_A Uridylate kinase; trans 71.9 1.9 6.5E-05 37.7 2.5 27 67-97 13-39 (203)
137 3ec2_A DNA replication protein 71.3 2.2 7.6E-05 36.8 2.7 34 67-104 36-69 (180)
138 3tr0_A Guanylate kinase, GMP k 71.2 2.7 9.3E-05 36.4 3.3 27 67-97 5-31 (205)
139 2atx_A Small GTP binding prote 71.2 15 0.00052 31.2 7.9 61 442-504 112-188 (194)
140 1osn_A Thymidine kinase, VZV-T 71.1 1.4 4.9E-05 44.4 1.7 39 67-112 10-49 (341)
141 1rz3_A Hypothetical protein rb 71.1 3.9 0.00013 36.4 4.3 28 67-98 20-47 (201)
142 1r2q_A RAS-related protein RAB 71.1 5.3 0.00018 32.6 4.8 66 437-505 95-165 (170)
143 2cdn_A Adenylate kinase; phosp 70.9 2.8 9.7E-05 36.7 3.4 27 67-97 18-44 (201)
144 2p67_A LAO/AO transport system 70.9 4.1 0.00014 39.8 4.8 43 67-114 54-96 (341)
145 1y63_A LMAJ004144AAA protein; 70.9 2.2 7.6E-05 37.3 2.7 26 67-96 8-33 (184)
146 3t61_A Gluconokinase; PSI-biol 70.6 2.4 8.2E-05 37.2 2.8 26 68-97 17-42 (202)
147 2jaq_A Deoxyguanosine kinase; 70.4 2.4 8.1E-05 36.5 2.7 24 71-98 2-25 (205)
148 1u8z_A RAS-related protein RAL 70.3 6.8 0.00023 31.7 5.3 53 449-504 108-162 (168)
149 2iyv_A Shikimate kinase, SK; t 70.1 2.2 7.4E-05 36.7 2.4 25 70-98 3-27 (184)
150 1r5b_A Eukaryotic peptide chai 70.0 14 0.00046 37.9 8.6 75 379-480 132-220 (467)
151 1e2k_A Thymidine kinase; trans 70.0 1.5 5.1E-05 44.0 1.5 39 67-113 2-40 (331)
152 3p32_A Probable GTPase RV1496/ 69.7 4.6 0.00016 39.6 4.9 42 67-113 77-118 (355)
153 2a5j_A RAS-related protein RAB 69.6 6.6 0.00022 33.6 5.3 64 438-504 111-179 (191)
154 1zp6_A Hypothetical protein AT 69.5 2.3 7.8E-05 36.6 2.4 25 67-95 7-31 (191)
155 2bov_A RAla, RAS-related prote 69.3 9.3 0.00032 32.5 6.2 53 449-504 118-172 (206)
156 2p5t_B PEZT; postsegregational 68.8 2.5 8.4E-05 39.2 2.6 28 66-97 29-56 (253)
157 1c1y_A RAS-related protein RAP 68.8 14 0.00047 30.0 6.9 54 449-505 107-163 (167)
158 1aky_A Adenylate kinase; ATP:A 68.6 2.7 9.2E-05 37.5 2.7 27 67-97 2-28 (220)
159 2ce2_X GTPase HRAS; signaling 68.5 17 0.00059 29.1 7.3 53 449-504 107-160 (166)
160 3t5g_A GTP-binding protein RHE 68.4 11 0.00039 31.4 6.4 55 447-504 108-164 (181)
161 2hk0_A D-psicose 3-epimerase; 67.9 30 0.001 32.2 9.9 63 426-489 96-173 (309)
162 3a8t_A Adenylate isopentenyltr 67.8 1.7 5.7E-05 44.1 1.3 28 67-98 38-65 (339)
163 3c8u_A Fructokinase; YP_612366 67.7 4.1 0.00014 36.3 3.7 28 67-98 20-47 (208)
164 2dr3_A UPF0273 protein PH0284; 67.5 5.5 0.00019 35.2 4.5 34 67-105 21-54 (247)
165 1zak_A Adenylate kinase; ATP:A 67.5 2.8 9.4E-05 37.5 2.6 28 67-98 3-30 (222)
166 2y8e_A RAB-protein 6, GH09086P 67.3 6.9 0.00024 32.2 4.8 56 447-505 116-173 (179)
167 2whl_A Beta-mannanase, baman5; 67.3 15 0.00051 34.5 7.6 55 440-495 34-92 (294)
168 2w0m_A SSO2452; RECA, SSPF, un 67.3 5.4 0.00019 34.6 4.4 27 67-97 21-47 (235)
169 2bcg_Y Protein YP2, GTP-bindin 66.9 10 0.00035 32.6 6.0 59 443-504 106-166 (206)
170 3cph_A RAS-related protein SEC 66.9 9.8 0.00033 32.7 5.9 64 438-504 110-177 (213)
171 2f7s_A C25KG, RAS-related prot 66.8 7.4 0.00025 33.9 5.1 66 436-504 123-194 (217)
172 3kws_A Putative sugar isomeras 66.6 48 0.0016 30.3 10.8 63 425-488 92-167 (287)
173 3sjy_A Translation initiation 66.4 12 0.00041 37.2 7.2 64 438-504 116-187 (403)
174 1p6x_A Thymidine kinase; P-loo 66.2 2 6.7E-05 43.2 1.5 40 67-113 5-44 (334)
175 2fg5_A RAB-22B, RAS-related pr 66.2 6.4 0.00022 33.8 4.5 65 438-505 113-182 (192)
176 1kao_A RAP2A; GTP-binding prot 66.0 15 0.00052 29.6 6.6 55 448-505 106-162 (167)
177 1p5z_B DCK, deoxycytidine kina 66.0 2.2 7.4E-05 39.5 1.6 36 67-112 22-57 (263)
178 3izq_1 HBS1P, elongation facto 65.6 21 0.00072 38.2 9.3 89 377-489 254-354 (611)
179 1z2a_A RAS-related protein RAB 65.5 8.4 0.00029 31.4 4.9 64 438-504 95-162 (168)
180 3be4_A Adenylate kinase; malar 65.5 2.6 8.9E-05 37.8 2.0 27 67-97 3-29 (217)
181 2yv5_A YJEQ protein; hydrolase 65.4 14 0.00048 35.5 7.2 62 438-502 98-162 (302)
182 2ze6_A Isopentenyl transferase 65.4 2.9 9.8E-05 39.1 2.3 25 70-98 2-26 (253)
183 3cpj_B GTP-binding protein YPT 65.4 5.3 0.00018 35.4 4.0 64 438-504 103-171 (223)
184 3ayv_A Putative uncharacterize 65.4 39 0.0013 30.4 9.8 79 424-503 63-153 (254)
185 1g5t_A COB(I)alamin adenosyltr 65.1 3.3 0.00011 38.9 2.7 36 67-108 27-62 (196)
186 1ojl_A Transcriptional regulat 64.9 1.3 4.5E-05 42.6 -0.0 40 69-114 25-64 (304)
187 3lw7_A Adenylate kinase relate 64.6 3.1 0.00011 34.2 2.2 20 70-93 2-21 (179)
188 1u0l_A Probable GTPase ENGC; p 64.6 18 0.00063 34.6 7.9 61 438-501 103-165 (301)
189 1jny_A EF-1-alpha, elongation 64.5 11 0.00039 37.9 6.6 58 437-496 130-200 (435)
190 3can_A Pyruvate-formate lyase- 64.4 16 0.00056 31.7 6.9 55 438-492 80-138 (182)
191 3j2k_7 ERF3, eukaryotic polype 64.2 10 0.00035 38.5 6.3 59 438-498 142-214 (439)
192 3avx_A Elongation factor TS, e 63.9 20 0.0007 42.3 9.3 98 377-505 368-482 (1289)
193 1z0j_A RAB-22, RAS-related pro 63.5 15 0.0005 30.0 6.0 55 448-505 109-165 (170)
194 2bme_A RAB4A, RAS-related prot 63.4 7.8 0.00027 32.4 4.5 60 442-504 107-168 (186)
195 2gco_A H9, RHO-related GTP-bin 63.3 23 0.00078 30.6 7.6 62 442-505 119-196 (201)
196 1u94_A RECA protein, recombina 62.9 5.1 0.00017 40.1 3.7 35 67-106 61-95 (356)
197 1tz9_A Mannonate dehydratase; 62.9 15 0.0005 36.0 6.9 29 432-461 90-118 (367)
198 1x3s_A RAS-related protein RAB 62.9 16 0.00056 30.6 6.4 65 437-504 104-173 (195)
199 1wb1_A Translation elongation 62.8 14 0.00049 38.0 7.2 63 439-504 114-184 (482)
200 3dz8_A RAS-related protein RAB 62.8 13 0.00046 31.6 5.9 54 449-505 127-182 (191)
201 2qw5_A Xylose isomerase-like T 62.8 32 0.0011 32.5 9.1 87 385-488 73-185 (335)
202 3fst_A 5,10-methylenetetrahydr 62.5 5.2 0.00018 39.7 3.7 105 364-482 178-294 (304)
203 2oil_A CATX-8, RAS-related pro 62.5 11 0.00037 32.0 5.3 64 438-504 115-183 (193)
204 1z08_A RAS-related protein RAB 62.4 7.3 0.00025 31.9 4.0 54 448-504 109-164 (170)
205 2fn4_A P23, RAS-related protei 62.3 16 0.00053 30.1 6.1 55 447-504 111-167 (181)
206 1wms_A RAB-9, RAB9, RAS-relate 62.2 28 0.00094 28.7 7.6 54 448-504 114-169 (177)
207 1w36_D RECD, exodeoxyribonucle 62.2 5.5 0.00019 42.3 4.0 27 68-98 163-189 (608)
208 4e22_A Cytidylate kinase; P-lo 62.1 4.1 0.00014 37.8 2.7 28 67-98 25-52 (252)
209 3asz_A Uridine kinase; cytidin 61.8 4.6 0.00016 35.5 2.9 27 67-97 4-30 (211)
210 2j0v_A RAC-like GTP-binding pr 61.7 12 0.0004 32.5 5.4 62 441-504 102-175 (212)
211 1htw_A HI0065; nucleotide-bind 61.5 4.3 0.00015 35.9 2.6 27 67-97 31-57 (158)
212 3vni_A Xylose isomerase domain 61.3 36 0.0012 31.1 8.9 64 424-488 75-153 (294)
213 1zbd_A Rabphilin-3A; G protein 61.3 13 0.00044 31.9 5.6 64 438-504 98-166 (203)
214 3foz_A TRNA delta(2)-isopenten 61.3 4 0.00014 41.1 2.7 28 67-98 8-35 (316)
215 3u0h_A Xylose isomerase domain 61.2 21 0.00073 32.1 7.2 56 431-488 78-143 (281)
216 1zd8_A GTP:AMP phosphotransfer 61.2 3.8 0.00013 36.8 2.2 26 68-97 6-31 (227)
217 3i8s_A Ferrous iron transport 61.0 5.7 0.00019 37.4 3.5 60 443-505 105-165 (274)
218 3exa_A TRNA delta(2)-isopenten 61.0 3.3 0.00011 41.9 2.0 26 69-98 3-28 (322)
219 1ak2_A Adenylate kinase isoenz 61.0 5.1 0.00017 36.3 3.1 27 67-97 14-40 (233)
220 2il1_A RAB12; G-protein, GDP, 60.9 8.6 0.00029 33.1 4.4 59 443-504 124-185 (192)
221 3pqc_A Probable GTP-binding pr 60.3 20 0.00069 29.9 6.5 60 443-504 126-189 (195)
222 1i60_A IOLI protein; beta barr 60.2 33 0.0011 30.7 8.3 75 428-503 75-164 (278)
223 3iby_A Ferrous iron transport 60.1 6.9 0.00024 36.7 3.9 60 443-505 103-163 (256)
224 3qc0_A Sugar isomerase; TIM ba 59.8 61 0.0021 29.0 10.0 62 426-488 72-144 (275)
225 2hxs_A RAB-26, RAS-related pro 59.7 8.9 0.0003 31.8 4.1 52 450-504 114-168 (178)
226 3r7w_A Gtpase1, GTP-binding pr 59.3 23 0.00079 33.8 7.5 54 440-493 103-168 (307)
227 2gk6_A Regulator of nonsense t 59.3 7.4 0.00025 41.2 4.4 35 69-107 195-229 (624)
228 3ea0_A ATPase, para family; al 59.2 25 0.00084 31.2 7.2 80 362-481 118-200 (245)
229 2atv_A RERG, RAS-like estrogen 59.2 9.8 0.00034 32.6 4.4 53 449-504 131-186 (196)
230 3ihw_A Centg3; RAS, centaurin, 59.1 31 0.001 29.6 7.6 67 436-504 101-175 (184)
231 2p5s_A RAS and EF-hand domain 59.1 17 0.0006 31.2 6.0 59 443-504 126-192 (199)
232 1via_A Shikimate kinase; struc 59.0 3.4 0.00012 35.4 1.5 24 71-98 6-29 (175)
233 2o52_A RAS-related protein RAB 58.9 8.7 0.0003 33.4 4.1 55 447-504 127-183 (200)
234 3upu_A ATP-dependent DNA helic 58.8 4.7 0.00016 40.8 2.7 33 71-108 47-79 (459)
235 2e87_A Hypothetical protein PH 58.8 35 0.0012 33.2 8.8 52 450-504 280-331 (357)
236 1ly1_A Polynucleotide kinase; 58.7 4.6 0.00016 33.9 2.2 22 70-95 3-24 (181)
237 2obn_A Hypothetical protein; s 58.5 7.8 0.00027 39.4 4.2 37 67-107 150-186 (349)
238 1x6v_B Bifunctional 3'-phospho 58.5 8 0.00027 42.1 4.6 36 68-108 51-86 (630)
239 3bwd_D RAC-like GTP-binding pr 58.3 15 0.00053 30.4 5.4 54 450-505 112-177 (182)
240 2kjq_A DNAA-related protein; s 58.3 13 0.00046 32.0 5.2 39 68-112 35-73 (149)
241 2hup_A RAS-related protein RAB 58.3 23 0.00078 30.8 6.7 65 438-504 119-188 (201)
242 2wjg_A FEOB, ferrous iron tran 57.2 4.6 0.00016 34.0 2.0 63 439-504 101-164 (188)
243 2erx_A GTP-binding protein DI- 57.2 9.7 0.00033 31.0 3.9 54 449-505 108-163 (172)
244 1bqc_A Protein (beta-mannanase 57.2 19 0.00066 33.8 6.4 52 441-493 36-91 (302)
245 4dhe_A Probable GTP-binding pr 56.8 33 0.0011 29.8 7.4 60 442-504 136-206 (223)
246 1ub3_A Aldolase protein; schif 56.7 12 0.00042 35.5 5.0 80 393-497 85-164 (220)
247 4dsu_A GTPase KRAS, isoform 2B 56.5 46 0.0016 27.6 8.0 54 448-504 107-161 (189)
248 3cbq_A GTP-binding protein REM 56.3 23 0.00079 30.8 6.4 64 438-504 114-183 (195)
249 2qt1_A Nicotinamide riboside k 55.9 5 0.00017 35.3 2.1 27 67-97 19-45 (207)
250 2elf_A Protein translation elo 55.9 17 0.00058 36.3 6.1 66 438-504 99-175 (370)
251 3tva_A Xylose isomerase domain 55.9 33 0.0011 31.4 7.6 58 431-489 96-161 (290)
252 4gzl_A RAS-related C3 botulinu 55.8 18 0.00063 31.5 5.7 62 442-505 124-201 (204)
253 1rj9_A FTSY, signal recognitio 55.7 12 0.00039 36.6 4.8 36 67-107 100-135 (304)
254 1ek0_A Protein (GTP-binding pr 55.6 12 0.0004 30.4 4.1 55 448-505 106-165 (170)
255 3oes_A GTPase rhebl1; small GT 55.6 19 0.00064 31.1 5.6 64 438-504 113-182 (201)
256 1g8f_A Sulfate adenylyltransfe 55.5 7.1 0.00024 41.4 3.5 27 68-98 394-420 (511)
257 1vht_A Dephospho-COA kinase; s 55.4 5.9 0.0002 35.1 2.5 23 69-95 4-26 (218)
258 2fv8_A H6, RHO-related GTP-bin 55.0 31 0.0011 29.9 7.0 60 443-504 120-195 (207)
259 3tw8_B RAS-related protein RAB 54.8 21 0.00071 29.4 5.6 52 450-504 113-166 (181)
260 3eph_A TRNA isopentenyltransfe 54.7 5.6 0.00019 41.3 2.5 25 70-98 3-27 (409)
261 1wky_A Endo-beta-1,4-mannanase 54.3 33 0.0011 35.3 8.1 56 439-495 41-100 (464)
262 3cwq_A Para family chromosome 54.2 42 0.0014 30.0 7.9 84 360-481 65-151 (209)
263 1ex7_A Guanylate kinase; subst 53.9 6.6 0.00022 36.0 2.6 43 70-116 2-44 (186)
264 1q3t_A Cytidylate kinase; nucl 53.9 7.8 0.00027 35.2 3.0 28 66-97 13-40 (236)
265 2c78_A Elongation factor TU-A; 53.8 27 0.00091 34.7 7.1 52 438-489 115-176 (405)
266 2ewv_A Twitching motility prot 53.8 11 0.00038 37.6 4.4 41 67-112 134-174 (372)
267 2x7v_A Probable endonuclease 4 53.5 48 0.0017 30.0 8.3 65 426-491 78-149 (287)
268 1njg_A DNA polymerase III subu 53.5 8 0.00027 32.9 2.9 26 69-98 45-70 (250)
269 2iwr_A Centaurin gamma 1; ANK 53.5 30 0.001 28.7 6.4 60 442-504 97-164 (178)
270 2g0t_A Conserved hypothetical 53.2 13 0.00045 37.7 4.9 37 67-107 167-203 (350)
271 1ky3_A GTP-binding protein YPT 53.2 43 0.0015 27.4 7.3 53 449-504 117-173 (182)
272 2ew1_A RAS-related protein RAB 53.1 16 0.00055 32.2 4.9 56 446-504 127-184 (201)
273 2gf0_A GTP-binding protein DI- 53.0 20 0.00069 30.2 5.3 54 449-505 113-167 (199)
274 2qag_A Septin-2, protein NEDD5 52.9 12 0.0004 37.1 4.4 57 449-505 173-233 (361)
275 1xp8_A RECA protein, recombina 52.6 12 0.00041 37.6 4.4 46 67-117 72-117 (366)
276 2eyu_A Twitching motility prot 52.6 14 0.00048 35.0 4.7 34 59-97 16-49 (261)
277 3e70_C DPA, signal recognition 52.6 13 0.00043 36.9 4.5 38 66-108 126-163 (328)
278 3b9q_A Chloroplast SRP recepto 52.5 12 0.0004 36.5 4.2 35 67-106 98-132 (302)
279 1m8p_A Sulfate adenylyltransfe 52.5 9.8 0.00034 40.5 4.0 34 67-105 394-428 (573)
280 2jeo_A Uridine-cytidine kinase 52.4 8.2 0.00028 35.3 3.0 27 67-97 23-49 (245)
281 3d3q_A TRNA delta(2)-isopenten 52.3 6 0.00021 39.9 2.2 25 70-98 8-32 (340)
282 3lk7_A UDP-N-acetylmuramoylala 52.1 10 0.00034 38.5 3.8 31 69-106 112-142 (451)
283 1d2n_A N-ethylmaleimide-sensit 52.1 7.8 0.00027 35.6 2.8 27 67-97 62-88 (272)
284 1ega_A Protein (GTP-binding pr 51.9 39 0.0013 32.3 7.7 60 444-505 110-171 (301)
285 1s96_A Guanylate kinase, GMP k 51.9 7.6 0.00026 35.9 2.7 27 67-97 14-40 (219)
286 4a0g_A Adenosylmethionine-8-am 51.8 5.5 0.00019 44.2 2.0 29 69-101 34-62 (831)
287 2j1l_A RHO-related GTP-binding 51.5 39 0.0013 29.6 7.1 53 450-504 138-204 (214)
288 3c8f_A Pyruvate formate-lyase 51.3 29 0.001 30.6 6.3 55 438-492 148-205 (245)
289 1w78_A FOLC bifunctional prote 51.3 11 0.00037 37.6 3.9 32 68-106 48-79 (422)
290 2zts_A Putative uncharacterize 51.3 13 0.00043 32.9 3.9 35 67-106 28-63 (251)
291 2zej_A Dardarin, leucine-rich 51.3 27 0.00091 29.8 5.8 66 438-505 98-174 (184)
292 3t5d_A Septin-7; GTP-binding p 50.9 20 0.00069 33.3 5.4 57 444-504 139-199 (274)
293 1zuh_A Shikimate kinase; alpha 50.6 5.7 0.00019 33.7 1.5 25 70-98 8-32 (168)
294 3tlx_A Adenylate kinase 2; str 50.6 8.8 0.0003 35.4 2.9 27 67-97 27-53 (243)
295 3hr8_A Protein RECA; alpha and 50.5 13 0.00043 37.5 4.2 78 31-115 15-102 (356)
296 2w58_A DNAI, primosome compone 50.2 9.5 0.00033 33.2 2.9 30 70-104 55-84 (202)
297 3uk6_A RUVB-like 2; hexameric 49.9 7.8 0.00027 36.8 2.5 48 47-98 46-95 (368)
298 3cqj_A L-ribulose-5-phosphate 49.8 56 0.0019 30.0 8.2 63 426-489 97-169 (295)
299 3eag_A UDP-N-acetylmuramate:L- 49.6 9.1 0.00031 37.1 2.9 31 69-106 108-138 (326)
300 3nwj_A ATSK2; P loop, shikimat 49.6 8 0.00027 36.8 2.5 26 69-98 48-73 (250)
301 2xdq_A Light-independent proto 49.5 10 0.00035 38.5 3.4 112 296-456 14-134 (460)
302 2wjy_A Regulator of nonsense t 49.5 13 0.00043 41.3 4.4 34 69-106 371-404 (800)
303 1qtw_A Endonuclease IV; DNA re 49.4 80 0.0027 28.5 9.0 66 425-491 77-150 (285)
304 3nrs_A Dihydrofolate:folylpoly 49.1 11 0.00036 38.3 3.4 41 59-106 41-82 (437)
305 1p9l_A Dihydrodipicolinate red 48.8 27 0.00091 33.4 6.0 61 439-503 58-119 (245)
306 2bdt_A BH3686; alpha-beta prot 48.5 7.3 0.00025 33.6 1.9 24 69-96 2-25 (189)
307 1d2e_A Elongation factor TU (E 48.4 35 0.0012 33.9 7.0 67 438-504 106-190 (397)
308 1nlf_A Regulatory protein REPA 48.3 15 0.00053 34.0 4.2 27 67-97 28-54 (279)
309 3b1v_A Ferrous iron uptake tra 48.2 14 0.00049 35.1 4.0 59 444-505 101-160 (272)
310 1p9r_A General secretion pathw 48.2 13 0.00045 38.0 4.0 40 67-112 165-204 (418)
311 3tr5_A RF-3, peptide chain rel 48.1 23 0.0008 37.2 5.9 41 441-481 125-165 (528)
312 3l0i_B RAS-related protein RAB 48.1 8.4 0.00029 33.3 2.2 66 437-505 122-192 (199)
313 2cvh_A DNA repair and recombin 47.9 10 0.00034 33.0 2.7 25 67-95 18-42 (220)
314 2eh6_A Acoat, acetylornithine 47.5 57 0.0019 30.4 7.9 27 463-490 190-216 (375)
315 4b3f_X DNA-binding protein smu 47.3 9.4 0.00032 40.4 2.8 33 71-108 207-239 (646)
316 3ngj_A Deoxyribose-phosphate a 47.3 22 0.00076 34.5 5.2 80 393-497 109-188 (239)
317 1kk1_A EIF2gamma; initiation o 47.2 36 0.0012 33.8 6.9 63 439-504 125-195 (410)
318 1n0w_A DNA repair protein RAD5 47.1 8.5 0.00029 34.0 2.1 26 67-96 22-47 (243)
319 2wsm_A Hydrogenase expression/ 46.7 16 0.00054 32.0 3.8 54 449-504 153-209 (221)
320 4bas_A ADP-ribosylation factor 46.7 67 0.0023 27.0 7.6 52 450-504 127-184 (199)
321 1jbk_A CLPB protein; beta barr 46.3 7.4 0.00025 32.1 1.5 28 67-98 41-68 (195)
322 1mh1_A RAC1; GTP-binding, GTPa 46.3 35 0.0012 28.2 5.6 60 443-504 100-175 (186)
323 2qul_A D-tagatose 3-epimerase; 46.3 66 0.0023 29.1 8.0 63 426-489 77-155 (290)
324 2vp4_A Deoxynucleoside kinase; 46.2 9 0.00031 34.8 2.2 36 67-112 18-53 (230)
325 1hyq_A MIND, cell division inh 46.0 45 0.0015 30.1 6.8 36 444-481 155-191 (263)
326 3tqc_A Pantothenate kinase; bi 45.9 16 0.00056 36.2 4.1 37 80-140 99-135 (321)
327 3gj0_A GTP-binding nuclear pro 45.9 9.3 0.00032 33.5 2.2 63 438-503 105-169 (221)
328 2xzl_A ATP-dependent helicase 45.9 15 0.00053 40.6 4.3 36 69-108 375-410 (802)
329 3ake_A Cytidylate kinase; CMP 45.6 7.6 0.00026 33.6 1.5 23 71-97 4-26 (208)
330 4gp7_A Metallophosphoesterase; 45.5 7.1 0.00024 33.9 1.3 22 67-92 7-28 (171)
331 2ehv_A Hypothetical protein PH 45.4 21 0.00071 31.6 4.4 25 67-95 28-52 (251)
332 3reg_A RHO-like small GTPase; 45.4 31 0.0011 29.3 5.4 53 450-504 127-183 (194)
333 2og2_A Putative signal recogni 45.2 17 0.00057 36.7 4.2 35 67-106 155-189 (359)
334 2qby_B CDC6 homolog 3, cell di 45.2 9.9 0.00034 36.0 2.4 48 47-98 22-70 (384)
335 3crm_A TRNA delta(2)-isopenten 45.1 9.4 0.00032 38.2 2.3 26 69-98 5-30 (323)
336 2h57_A ADP-ribosylation factor 44.7 59 0.002 27.4 7.0 53 449-504 125-182 (190)
337 1k77_A EC1530, hypothetical pr 44.6 71 0.0024 28.5 7.8 56 432-488 80-145 (260)
338 1uf9_A TT1252 protein; P-loop, 44.5 12 0.00041 32.1 2.6 23 69-95 8-30 (203)
339 2gks_A Bifunctional SAT/APS ki 44.5 16 0.00054 38.6 4.0 33 68-105 371-403 (546)
340 2pt5_A Shikimate kinase, SK; a 44.2 8.2 0.00028 32.4 1.5 23 71-97 2-24 (168)
341 1vcv_A Probable deoxyribose-ph 44.1 27 0.00093 33.4 5.2 73 393-490 80-152 (226)
342 3u7q_B Nitrogenase molybdenum- 43.9 1.4E+02 0.0047 31.5 11.0 159 326-502 80-284 (523)
343 1z6g_A Guanylate kinase; struc 43.3 11 0.00037 34.2 2.2 25 67-95 21-45 (218)
344 2qby_A CDC6 homolog 1, cell di 43.3 26 0.0009 32.6 4.9 28 67-98 43-70 (386)
345 2p65_A Hypothetical protein PF 43.3 6.6 0.00022 32.6 0.7 28 67-98 41-68 (187)
346 2a5y_B CED-4; apoptosis; HET: 43.1 16 0.00055 37.7 3.7 69 39-113 123-196 (549)
347 1ksh_A ARF-like protein 2; sma 43.1 27 0.00092 29.3 4.5 53 449-504 118-175 (186)
348 3k1j_A LON protease, ATP-depen 43.1 4.7 0.00016 42.5 -0.2 43 47-98 43-85 (604)
349 2vf7_A UVRA2, excinuclease ABC 43.0 7.7 0.00026 43.6 1.4 22 67-92 34-55 (842)
350 1vg8_A RAS-related protein RAB 42.9 60 0.0021 27.5 6.8 53 449-504 116-170 (207)
351 3apt_A Methylenetetrahydrofola 42.8 21 0.00071 35.3 4.3 104 364-481 175-290 (310)
352 2dyk_A GTP-binding protein; GT 42.7 13 0.00043 30.2 2.3 55 446-505 104-158 (161)
353 2cxx_A Probable GTP-binding pr 42.5 31 0.0011 28.7 4.8 59 443-504 115-179 (190)
354 1odf_A YGR205W, hypothetical 3 42.3 15 0.00052 35.4 3.2 28 67-98 29-56 (290)
355 3hp4_A GDSL-esterase; psychrot 42.2 66 0.0023 26.8 6.8 107 348-481 25-139 (185)
356 3aez_A Pantothenate kinase; tr 41.7 24 0.0008 34.5 4.5 28 66-97 87-114 (312)
357 1uj2_A Uridine-cytidine kinase 41.4 8.4 0.00029 35.4 1.2 25 70-98 23-47 (252)
358 1g3q_A MIND ATPase, cell divis 41.4 31 0.0011 30.5 4.9 23 443-465 155-178 (237)
359 3cny_A Inositol catabolism pro 41.3 1.4E+02 0.0046 27.2 9.3 58 431-489 84-163 (301)
360 2qgz_A Helicase loader, putati 41.3 15 0.0005 35.5 2.9 33 69-105 152-184 (308)
361 1cr0_A DNA primase/helicase; R 41.1 33 0.0011 31.9 5.2 27 67-97 33-59 (296)
362 2wji_A Ferrous iron transport 41.1 11 0.00039 31.5 1.9 60 443-505 101-161 (165)
363 3syl_A Protein CBBX; photosynt 40.9 19 0.00063 33.3 3.4 65 28-102 19-95 (309)
364 3qq5_A Small GTP-binding prote 40.8 7.9 0.00027 39.7 1.0 62 440-504 130-191 (423)
365 1o5z_A Folylpolyglutamate synt 40.8 19 0.00065 36.5 3.8 40 68-115 51-90 (442)
366 3kta_A Chromosome segregation 40.8 15 0.0005 31.4 2.6 23 71-97 28-50 (182)
367 1gwn_A RHO-related GTP-binding 40.5 53 0.0018 28.9 6.2 54 449-504 131-199 (205)
368 2r2a_A Uncharacterized protein 40.4 18 0.0006 33.2 3.2 23 71-97 7-29 (199)
369 2v1u_A Cell division control p 40.4 20 0.00068 33.6 3.6 28 67-98 42-69 (387)
370 1yrb_A ATP(GTP)binding protein 40.3 69 0.0024 28.7 7.0 58 446-505 167-253 (262)
371 1vi1_A Fatty acid/phospholipid 40.1 7.1 0.00024 39.1 0.5 26 335-360 280-312 (345)
372 2orv_A Thymidine kinase; TP4A 39.8 23 0.00077 34.3 3.9 46 67-119 17-62 (234)
373 2f6r_A COA synthase, bifunctio 39.8 15 0.00052 34.8 2.7 23 68-94 74-96 (281)
374 3lmz_A Putative sugar isomeras 39.7 36 0.0012 30.8 5.1 48 436-489 88-135 (257)
375 1ydn_A Hydroxymethylglutaryl-C 39.6 58 0.002 31.1 6.8 55 435-489 118-178 (295)
376 4dzz_A Plasmid partitioning pr 39.6 27 0.00093 30.0 4.1 87 359-481 72-160 (206)
377 1zj6_A ADP-ribosylation factor 39.6 61 0.0021 27.3 6.2 54 449-505 116-174 (187)
378 1jbw_A Folylpolyglutamate synt 39.3 21 0.00071 35.8 3.8 39 68-114 38-76 (428)
379 1sq5_A Pantothenate kinase; P- 39.3 18 0.00062 34.7 3.2 46 67-140 78-123 (308)
380 2q3h_A RAS homolog gene family 39.2 70 0.0024 27.2 6.6 53 450-504 124-190 (201)
381 3bh0_A DNAB-like replicative h 39.2 27 0.00093 33.6 4.5 64 27-97 26-92 (315)
382 3bbn_M Ribosomal protein S13; 39.1 7.8 0.00027 35.5 0.6 25 198-222 79-103 (145)
383 3iev_A GTP-binding protein ERA 38.9 43 0.0015 32.0 5.7 60 443-505 115-178 (308)
384 2q02_A Putative cytoplasmic pr 38.8 1.1E+02 0.0037 27.4 8.1 52 437-489 85-142 (272)
385 1ltq_A Polynucleotide kinase; 38.7 14 0.00047 34.3 2.2 23 70-96 3-25 (301)
386 3dx5_A Uncharacterized protein 38.7 90 0.0031 28.3 7.6 57 433-490 80-146 (286)
387 2x5o_A UDP-N-acetylmuramoylala 38.7 23 0.0008 35.6 4.0 32 69-107 104-135 (439)
388 3tqf_A HPR(Ser) kinase; transf 38.6 15 0.00052 34.5 2.5 24 68-95 15-38 (181)
389 4djt_A GTP-binding nuclear pro 38.4 68 0.0023 27.7 6.5 60 441-503 108-169 (218)
390 1cke_A CK, MSSA, protein (cyti 38.2 11 0.00039 33.1 1.5 25 69-97 5-29 (227)
391 3e2i_A Thymidine kinase; Zn-bi 38.1 25 0.00085 33.8 3.9 47 67-120 26-72 (219)
392 2zr9_A Protein RECA, recombina 38.0 28 0.00096 34.5 4.4 44 67-115 59-102 (349)
393 2h17_A ADP-ribosylation factor 37.9 55 0.0019 27.5 5.7 55 448-505 120-179 (181)
394 3hn7_A UDP-N-acetylmuramate-L- 37.7 17 0.00058 37.8 2.9 32 68-106 121-152 (524)
395 3ez9_A Para; DNA binding, wing 37.6 77 0.0026 31.2 7.5 90 361-481 246-340 (403)
396 3qxb_A Putative xylose isomera 37.5 60 0.0021 30.4 6.4 79 425-503 102-200 (316)
397 1m7b_A RND3/RHOE small GTP-bin 37.2 59 0.002 27.4 5.8 54 449-504 110-178 (184)
398 1g7s_A Translation initiation 37.1 1.8E+02 0.006 31.2 10.6 20 443-462 115-134 (594)
399 4a74_A DNA repair and recombin 37.1 14 0.00048 32.2 1.9 26 67-96 23-48 (231)
400 3zvl_A Bifunctional polynucleo 36.9 13 0.00044 37.4 1.8 27 67-97 256-282 (416)
401 3fb4_A Adenylate kinase; psych 36.9 12 0.0004 33.0 1.3 22 72-97 3-24 (216)
402 3pdi_B Nitrogenase MOFE cofact 36.5 1.4E+02 0.0047 30.8 9.4 85 297-403 7-103 (458)
403 3rjt_A Lipolytic protein G-D-S 36.0 1.5E+02 0.0051 24.9 8.2 123 344-481 36-170 (216)
404 3ghf_A Septum site-determining 35.7 38 0.0013 29.2 4.3 56 426-486 24-81 (120)
405 2grj_A Dephospho-COA kinase; T 35.6 18 0.00061 32.8 2.4 26 68-97 11-36 (192)
406 3ndo_A Deoxyribose-phosphate a 35.4 48 0.0016 31.9 5.4 80 394-497 95-178 (231)
407 1svm_A Large T antigen; AAA+ f 35.3 22 0.00074 36.0 3.2 28 66-97 166-193 (377)
408 1jjv_A Dephospho-COA kinase; P 35.2 9.5 0.00033 33.4 0.5 21 71-95 4-24 (206)
409 1s0u_A EIF-2-gamma, translatio 35.0 37 0.0013 33.7 4.8 62 440-504 124-193 (408)
410 2chg_A Replication factor C sm 34.9 14 0.00049 31.1 1.6 24 71-98 40-63 (226)
411 1byi_A Dethiobiotin synthase; 34.7 71 0.0024 28.0 6.1 46 436-481 152-198 (224)
412 1e8c_A UDP-N-acetylmuramoylala 34.6 24 0.00081 36.2 3.4 32 68-106 107-138 (498)
413 2r6a_A DNAB helicase, replicat 34.6 35 0.0012 34.5 4.5 36 59-98 192-228 (454)
414 1f76_A Dihydroorotate dehydrog 34.5 2E+02 0.0069 27.7 9.8 60 428-489 186-248 (336)
415 1tv8_A MOAA, molybdenum cofact 34.4 69 0.0024 30.6 6.4 44 438-481 147-190 (340)
416 3pih_A Uvrabc system protein A 34.2 14 0.00049 41.8 1.8 26 67-96 22-47 (916)
417 3jug_A Beta-mannanase; TIM-bar 34.1 1E+02 0.0036 30.6 7.8 55 440-495 57-115 (345)
418 2bbw_A Adenylate kinase 4, AK4 34.0 14 0.00046 33.7 1.3 27 68-98 26-52 (246)
419 1svi_A GTP-binding protein YSX 34.0 77 0.0026 26.6 6.0 57 445-504 129-190 (195)
420 2l82_A Designed protein OR32; 33.8 69 0.0024 28.8 5.8 24 440-463 93-116 (162)
421 3r20_A Cytidylate kinase; stru 33.8 14 0.00049 35.0 1.5 25 69-97 9-33 (233)
422 2yhs_A FTSY, cell division pro 33.7 31 0.0011 36.7 4.2 36 67-107 291-326 (503)
423 3bg3_A Pyruvate carboxylase, m 33.7 83 0.0028 34.9 7.6 54 436-489 223-284 (718)
424 2cw6_A Hydroxymethylglutaryl-C 33.3 1.2E+02 0.0041 29.1 7.9 58 432-489 116-179 (298)
425 1qgu_B Protein (nitrogenase mo 33.2 1.6E+02 0.0053 31.0 9.3 167 309-502 71-280 (519)
426 2axn_A 6-phosphofructo-2-kinas 33.2 31 0.0011 36.1 4.0 33 68-105 34-66 (520)
427 3llu_A RAS-related GTP-binding 33.2 65 0.0022 27.6 5.5 65 436-504 113-192 (196)
428 1f6b_A SAR1; gtpases, N-termin 33.1 77 0.0026 27.4 6.0 57 449-505 125-195 (198)
429 2if2_A Dephospho-COA kinase; a 33.0 13 0.00045 32.4 1.0 21 71-95 3-23 (204)
430 3czq_A Putative polyphosphate 33.0 14 0.00049 36.9 1.4 41 67-113 84-124 (304)
431 3dl0_A Adenylate kinase; phosp 32.9 13 0.00043 32.8 0.9 22 72-97 3-24 (216)
432 3a1s_A Iron(II) transport prot 32.9 14 0.00049 34.5 1.3 59 443-504 103-162 (258)
433 2ygr_A Uvrabc system protein A 32.9 14 0.00047 42.5 1.4 24 67-94 44-67 (993)
434 2q6t_A DNAB replication FORK h 32.4 40 0.0014 33.9 4.6 36 59-98 189-225 (444)
435 2wtz_A UDP-N-acetylmuramoyl-L- 32.1 27 0.00094 36.3 3.4 32 68-106 145-176 (535)
436 1f60_A Elongation factor EEF1A 32.0 48 0.0016 33.8 5.1 52 438-489 132-194 (458)
437 2wkq_A NPH1-1, RAS-related C3 31.9 68 0.0023 29.5 5.7 53 450-504 259-325 (332)
438 3r12_A Deoxyribose-phosphate a 31.9 95 0.0032 30.5 7.0 77 394-496 126-203 (260)
439 4hv4_A UDP-N-acetylmuramate--L 31.7 29 0.00099 35.8 3.4 30 69-105 122-151 (494)
440 4dcu_A GTP-binding protein ENG 31.6 60 0.002 32.7 5.7 60 441-503 297-363 (456)
441 1e4v_A Adenylate kinase; trans 31.6 16 0.00055 32.4 1.3 22 72-97 3-24 (214)
442 2g3y_A GTP-binding protein GEM 31.4 73 0.0025 28.8 5.7 53 449-504 144-198 (211)
443 1j6u_A UDP-N-acetylmuramate-al 31.2 30 0.001 35.4 3.4 31 69-106 114-144 (469)
444 1fnn_A CDC6P, cell division co 31.2 26 0.00088 33.0 2.8 23 71-97 46-68 (389)
445 2gza_A Type IV secretion syste 31.2 17 0.00057 36.0 1.5 27 67-97 173-199 (361)
446 2r6f_A Excinuclease ABC subuni 31.1 16 0.00054 42.0 1.5 24 67-94 42-65 (972)
447 3fdi_A Uncharacterized protein 31.0 15 0.00053 33.2 1.2 24 71-98 8-31 (201)
448 3l44_A Glutamate-1-semialdehyd 31.0 2E+02 0.0067 27.7 9.0 35 464-499 221-258 (434)
449 2f1r_A Molybdopterin-guanine d 30.9 17 0.00057 32.5 1.4 30 70-104 3-32 (171)
450 1nij_A Hypothetical protein YJ 30.2 19 0.00065 34.7 1.7 37 71-116 6-42 (318)
451 3obe_A Sugar phosphate isomera 30.2 1E+02 0.0036 29.0 6.8 55 433-489 110-172 (305)
452 2qu8_A Putative nucleolar GTP- 30.1 87 0.003 27.6 5.9 59 443-504 133-200 (228)
453 1q57_A DNA primase/helicase; d 30.0 31 0.0011 35.2 3.3 28 66-97 239-266 (503)
454 3bgw_A DNAB-like replicative h 29.9 43 0.0015 34.3 4.4 42 58-104 185-227 (444)
455 3k53_A Ferrous iron transport 29.9 54 0.0018 30.3 4.7 57 445-504 103-161 (271)
456 1znw_A Guanylate kinase, GMP k 29.8 27 0.00093 30.9 2.6 27 67-97 18-44 (207)
457 3q3j_B RHO-related GTP-binding 29.8 51 0.0017 29.0 4.3 59 443-503 122-197 (214)
458 2zqe_A MUTS2 protein; alpha/be 29.7 2.2E+02 0.0075 22.9 7.7 64 432-497 14-77 (83)
459 2lf6_A Effector protein hopab1 29.7 51 0.0018 28.6 4.1 37 156-212 40-76 (101)
460 3tif_A Uncharacterized ABC tra 29.7 22 0.00075 33.0 2.0 21 67-91 29-49 (235)
461 2xb4_A Adenylate kinase; ATP-b 29.6 19 0.00064 32.5 1.5 23 71-97 2-24 (223)
462 3dxv_A Alpha-amino-epsilon-cap 29.5 1E+02 0.0035 29.8 6.7 39 451-490 202-245 (439)
463 3ewb_X 2-isopropylmalate synth 29.4 1.4E+02 0.0047 29.0 7.7 58 432-489 116-173 (293)
464 3p6l_A Sugar phosphate isomera 29.4 1E+02 0.0035 27.7 6.4 48 437-490 91-138 (262)
465 4a1f_A DNAB helicase, replicat 29.2 47 0.0016 33.2 4.4 42 58-104 34-76 (338)
466 3ngf_A AP endonuclease, family 28.9 1.1E+02 0.0039 27.7 6.6 55 432-487 88-151 (269)
467 1moz_A ARL1, ADP-ribosylation 28.7 85 0.0029 25.9 5.3 64 438-504 103-175 (183)
468 1p3d_A UDP-N-acetylmuramate--a 28.7 35 0.0012 34.7 3.4 29 69-104 118-146 (475)
469 2lkc_A Translation initiation 28.7 1.4E+02 0.0048 24.4 6.6 57 443-504 100-166 (178)
470 3ijp_A DHPR, dihydrodipicolina 28.5 57 0.002 32.1 4.8 57 440-502 102-158 (288)
471 2qz4_A Paraplegin; AAA+, SPG7, 28.3 21 0.00072 31.9 1.5 25 69-97 39-63 (262)
472 2www_A Methylmalonic aciduria 28.0 64 0.0022 31.7 5.1 43 67-114 72-114 (349)
473 2ord_A Acoat, acetylornithine 27.9 1.4E+02 0.0048 28.2 7.3 25 465-490 203-227 (397)
474 1nvm_A HOA, 4-hydroxy-2-oxoval 27.9 96 0.0033 30.6 6.3 53 437-489 120-172 (345)
475 1s1m_A CTP synthase; CTP synth 27.9 47 0.0016 35.7 4.3 41 69-112 3-43 (545)
476 2cjw_A GTP-binding protein GEM 27.9 97 0.0033 26.7 5.7 60 442-504 105-167 (192)
477 2am1_A SP protein, UDP-N-acety 27.7 38 0.0013 34.2 3.4 30 67-103 98-127 (454)
478 1sxj_C Activator 1 40 kDa subu 27.5 22 0.00074 34.0 1.6 23 72-98 49-71 (340)
479 1n7k_A Deoxyribose-phosphate a 27.5 1.5E+02 0.0051 28.4 7.3 56 438-495 121-178 (234)
480 3fvq_A Fe(3+) IONS import ATP- 27.3 34 0.0012 34.6 3.0 23 67-93 28-50 (359)
481 1gg4_A UDP-N-acetylmuramoylala 27.3 34 0.0012 34.6 3.1 30 67-103 98-127 (452)
482 2nx9_A Oxaloacetate decarboxyl 27.3 1.1E+02 0.0038 32.0 7.0 52 437-489 127-181 (464)
483 2z43_A DNA repair and recombin 27.2 36 0.0012 32.7 3.1 27 67-97 105-131 (324)
484 4f3y_A DHPR, dihydrodipicolina 27.2 57 0.002 31.6 4.5 58 439-502 86-143 (272)
485 3l23_A Sugar phosphate isomera 27.2 1.7E+02 0.0059 27.4 7.7 56 433-489 104-168 (303)
486 3p6l_A Sugar phosphate isomera 27.1 1.3E+02 0.0043 27.1 6.5 42 443-486 69-110 (262)
487 4dkx_A RAS-related protein RAB 27.0 91 0.0031 28.4 5.6 65 436-503 101-170 (216)
488 1knx_A Probable HPR(Ser) kinas 27.0 25 0.00085 35.1 2.0 24 68-95 146-169 (312)
489 2f00_A UDP-N-acetylmuramate--L 27.0 39 0.0013 34.6 3.4 29 69-104 119-147 (491)
490 4fcw_A Chaperone protein CLPB; 27.0 22 0.00077 32.7 1.5 24 71-98 49-72 (311)
491 3m6a_A ATP-dependent protease 27.0 24 0.00082 36.9 1.9 48 47-98 83-133 (543)
492 3cf0_A Transitional endoplasmi 27.0 35 0.0012 32.2 2.9 27 67-97 47-73 (301)
493 3umf_A Adenylate kinase; rossm 26.8 38 0.0013 31.6 3.0 27 67-97 27-53 (217)
494 3f9t_A TDC, L-tyrosine decarbo 26.8 1.4E+02 0.0047 27.5 6.8 43 450-493 171-214 (397)
495 1ofh_A ATP-dependent HSL prote 26.4 24 0.00081 32.2 1.5 26 69-98 50-75 (310)
496 3nra_A Aspartate aminotransfer 26.2 1.3E+02 0.0043 28.3 6.6 43 450-493 179-225 (407)
497 3qd7_X Uncharacterized protein 26.1 2.4E+02 0.0083 24.9 8.0 65 433-497 58-126 (137)
498 2h92_A Cytidylate kinase; ross 26.1 21 0.00073 31.3 1.2 24 70-97 4-27 (219)
499 2y1h_A Putative deoxyribonucle 26.1 1.3E+02 0.0046 27.3 6.6 57 437-505 126-182 (272)
500 3tl8_B Effector protein hopab2 26.1 67 0.0023 28.4 4.2 37 156-212 57-93 (117)
No 1
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=100.00 E-value=1.3e-214 Score=1652.78 Aligned_cols=413 Identities=47% Similarity=0.758 Sum_probs=408.5
Q ss_pred CCCHHHHHHHcCCCCcccccccCceeeechhhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 28 PLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 28 ~~~I~~iA~~lgl~~~~le~YG~~kAKi~l~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
++||.+||+++||++|||||||+|||||++++++|++++++|||||||||||||+|||||||||||+|||+ |+||++++
T Consensus 2 ~~pI~~iA~~lgi~~~~le~YG~~kAKv~~~~l~~~~~~~~GklIlVTaItPTPaGEGKtTttiGL~~aL~-~lgk~~~~ 80 (543)
T 3do6_A 2 MKPIKEIADQLELKDDILYPYGHYIAKIDHRFLKSLENHEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLN-RIGKKSIV 80 (543)
T ss_dssp CCCHHHHHHHTTCCGGGEEEETTTEEEECTTHHHHTTTSCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHH-HTTCCEEE
T ss_pred CCCHHHHHHHcCCCHHHHHhCCCccEEecHHHhhhhhcCCCCeEEEEEecCCCCCCCCccchHHHHHHHHH-hcCCeeEE
Confidence 78999999999999999999999999999999999998899999999999999999999999999999995 99999999
Q ss_pred EecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHhhhccCCCCCcCC
Q 010555 108 CLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGE 187 (507)
Q Consensus 108 ~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaA~NLlaA~iDn~i~~~n~~~~~~l~~rl~p~~~~g~ 187 (507)
|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||||
T Consensus 81 ~lRePSlGP~FGiKGGAaGGGysQViPMediNLHfTGD~HAItaAnNLLaA~iDn~i~~gn------------------- 141 (543)
T 3do6_A 81 TLREPSLGPTLGLKGGATGGGRSRVLPSDEINLHFTGDMHAVASAHNLLAAVLDSHIKHGN------------------- 141 (543)
T ss_dssp EECCCCHHHHHHSCCSTTEETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred EEecCCCCCcCCcccccCCCcceeecchhhccccccchHHHHHHHHHHHHHHHHHHHhccC-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCCCCcceecceeeeeh
Q 010555 188 RSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVA 267 (507)
Q Consensus 188 r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~~~G~~re~gFdITvA 267 (507)
+|+|||++|+||||||||||+||+|+||+|++.||+|||||||||||
T Consensus 142 ---------------------------------~L~IDp~~I~WkRv~D~NDR~LR~IvvGlGg~~~G~~re~gFdITvA 188 (543)
T 3do6_A 142 ---------------------------------ELKIDITRVFWKRTMDMNDRALRSIVIGLGGSANGFPREDSFIITAA 188 (543)
T ss_dssp ---------------------------------TTCEEEEEECCCEEESSCCGGGSSEEESCSSGGGCCCEEECEEEGGG
T ss_pred ---------------------------------ccCCCCCeEEEEecccccCceeeeeEECCCCCCCCCccccceeEEeh
Confidence 79999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccceeecCceeEEeccCcccccccC
Q 010555 268 SEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGN 347 (507)
Q Consensus 268 SEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~VHgGPFANIAhG~ 347 (507)
||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||||||||||||||||||||||
T Consensus 189 SEiMAILcLa~dl~DLk~Rlg~ivvay~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~VHgGPFANIAHGc 268 (543)
T 3do6_A 189 SEVMAILALSENMKDLKERLGKIIVALDADRKIVRISDLGIQGAMAVLLKDAINPNLVQTTEGTPALIHCGPFANIAHGT 268 (543)
T ss_dssp SHHHHHHHHCSSHHHHHHHHHTCEEEEETTSCEEEHHHHTCHHHHHHHTTTTTSCEEEEETTSCEEEECCCCCSSSSCCB
T ss_pred hhhhhHHHhcCCHHHHHHHhcCEEEEEcCCCCeEehHhcccchhHHHHHHhhcCccceeeccCCeeEEecCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhcccc
Q 010555 348 SSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNE 427 (507)
Q Consensus 348 nSviAtk~ALklag~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~e 427 (507)
|||||||+||||+ ||||||||||||||||||||||||++||+||||||||||||||||||+++ ++|.+|
T Consensus 269 nSviAtk~ALkla---DyvVTEAGFGADlGaEKF~dIKCR~~gl~P~avVlVATvRALK~hGG~~~--------~~l~~e 337 (543)
T 3do6_A 269 NSIIATKMAMKLS---EYTVTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGANL--------KNIHEE 337 (543)
T ss_dssp CCHHHHHHHHHHC---SEEEEEBSSSTTTHHHHHHHTHHHHHTCCCSEEEEEECHHHHHHHTTCCG--------GGTTSC
T ss_pred hHHHHHHHHHhcc---CeEEEecccccccchHhhcCccccccCCCCCEEEEEeehHHHHhcCCCCh--------hhcCcc
Confidence 9999999999999 99999999999999999999999999999999999999999999999987 789999
Q ss_pred CHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 428 nl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
|+++|++||+||+|||||+++||+|||||||+|++||++||++|+++|+++|+. +++|+||++||+|+++||++|++
T Consensus 338 nl~al~~G~~NL~kHIen~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~-~~~s~~wa~GG~G~~~LA~~Vv~ 414 (543)
T 3do6_A 338 NLEALKEGFKNLRVHVENLRKFNLPVVVALNRFSTDTEKEIAYVVKECEKLGVR-VAVSEVFKKGSEGGVELAKAVAE 414 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCHHHHHHHHHHHHTTTCE-EEEECHHHHGGGGSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCC-EEEechhhccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999995 99999999999999999999986
No 2
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=100.00 E-value=3.1e-203 Score=1574.28 Aligned_cols=425 Identities=54% Similarity=0.903 Sum_probs=416.3
Q ss_pred CCCCChHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeechhhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhH
Q 010555 14 SPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGL 93 (507)
Q Consensus 14 ~pm~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~~kAKi~l~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL 93 (507)
+||||||||||+++|+||.+||+++||+++||||||+|||||++++++++++++++|+|+||+++|||+||||||||++|
T Consensus 2 ~~~~sDieIa~~~~~~pI~~ia~~~gi~~~~lE~YG~~kAKv~~~~l~~~~~~~~~K~IlVTS~~PTP~GEGKSTtsinL 81 (557)
T 3pzx_A 2 SKVPSDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGL 81 (557)
T ss_dssp ----CCTTTTTTCCCCCHHHHHHHTTCCGGGEEEBSSSCEEECHHHHHHTTTSCCCEEEEEEESCCCTTCCCHHHHHHHH
T ss_pred CCCCCHHHHHhhCCCcCHHHHHHHcCCCHHHHHHhhCeeEEecHHHhhhhhccCCCcEEEEEcCCCCCCCCCchhHHHHH
Confidence 48999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChh
Q 010555 94 CQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDK 173 (507)
Q Consensus 94 ~qaL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaA~NLlaA~iDn~i~~~n~~~~~ 173 (507)
+++| +++|++++++||+|||||+||+||||+|||||||+|||||||||||||||||||||||||+|||||||||
T Consensus 82 A~al-A~~GkkVLLiLR~Psl~~~FGikggaaggG~sqv~Pme~~nLhfTGD~hAItaAnNLlaA~iDn~i~~gn----- 155 (557)
T 3pzx_A 82 TDAL-ARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGN----- 155 (557)
T ss_dssp HHHH-HHTTCCEEEEECCCCSHHHHHTCCCCEEETTEEEECHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHH-HHcCCeEEEEeCCCCccccCCCCCCCCCCCceeeeechhcccCccCchhhHHHhhhHHHHHHHHHHhhcC-----
Confidence 9999 5999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCC
Q 010555 174 ALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEE 253 (507)
Q Consensus 174 ~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~~ 253 (507)
+|+|||++|+|+||||||||+||+|+||+|++.
T Consensus 156 -----------------------------------------------~l~idp~~i~w~Rv~D~NdR~LR~i~~glg~~~ 188 (557)
T 3pzx_A 156 -----------------------------------------------VLNIDPRTITWRRVIDLNDRALRNIVIGLGGKA 188 (557)
T ss_dssp -----------------------------------------------TTCBCGGGCCCCEEESSCCGGGSSEEESCSSGG
T ss_pred -----------------------------------------------CCCccCCeeEEeeeecCChHHhhhhhhccCCCC
Confidence 799999999999999999999999999999999
Q ss_pred CCcceecceeeeehhhHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccceeecCcee
Q 010555 254 KGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPV 333 (507)
Q Consensus 254 ~G~~re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa 333 (507)
||+|||||||||||||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||||||||
T Consensus 189 ~G~~re~gFdITvASEiMAIlcLa~dl~Dlk~Rlg~ivv~~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa 268 (557)
T 3pzx_A 189 NGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPA 268 (557)
T ss_dssp GCCCEEECEEEGGGCHHHHHHHHCSSHHHHHHHHHHCEEEEBTTSCEEETGGGTCHHHHHHHTTTTTSCEEEEETTCCEE
T ss_pred CCCccccceeEEehhhhhhHHHhcCCHHHHHHHhhCEEEEEcCCCCeeeHHHcccchhHHHHHHhhcCccceeeccCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCcccccccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCC
Q 010555 334 LVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQ 413 (507)
Q Consensus 334 ~VHgGPFANIAhG~nSviAtk~ALklag~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~ 413 (507)
|||||||||||||||||||||+||||+ ||||||||||||||||||||||||++||+||||||||||||||||||+++
T Consensus 269 ~vHgGPFANIAHGcnSviAtk~ALkl~---dyvVTEAGFGaDlGaEKF~dIKcR~~gl~P~avVlVATvRALK~hGG~~~ 345 (557)
T 3pzx_A 269 FIHGGPFANIAHGCNSIIATKTALKLA---DYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPK 345 (557)
T ss_dssp EECCCCCSSSSCCBCCHHHHHHHHHHC---SEEEEEBSSCTTTHHHHHHHTHHHHHTCCCCEEEEEECHHHHHHHTTCCG
T ss_pred EEecCcccccccCchHHHHHHHHHhcc---CeEEEecccCcCcchhhhcCCcccccCCCCCEEEEEeehHHHHhcCCCCh
Confidence 999999999999999999999999999 99999999999999999999999999999999999999999999999986
Q ss_pred ccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCc
Q 010555 414 VVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGG 493 (507)
Q Consensus 414 ~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GG 493 (507)
++|.+||+++|++||+||.|||||+++||+|||||||+|++||++||++|+++|+++|+. +++| |++||
T Consensus 346 --------~~l~~en~~al~~G~~NL~kHien~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~-~~~~--wa~GG 414 (557)
T 3pzx_A 346 --------SDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAE-VALS--WAKGG 414 (557)
T ss_dssp --------GGTTSCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCTTCCHHHHHHHHHHCCSSEEE-EECH--HHHGG
T ss_pred --------hhcCccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCC-EEEE--ecccc
Confidence 789999999999999999999999999999999999999999999999999999999995 8999 99999
Q ss_pred hhhHHHHHhhhh
Q 010555 494 KGAFKEPVRMLH 505 (507)
Q Consensus 494 eGa~~LA~~v~~ 505 (507)
+|+++||++|++
T Consensus 415 ~G~~~LA~~Vv~ 426 (557)
T 3pzx_A 415 EGGLELARKVLQ 426 (557)
T ss_dssp GGGHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 999999999985
No 3
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.96 E-value=5.8e-31 Score=213.75 Aligned_cols=70 Identities=56% Similarity=0.883 Sum_probs=67.6
Q ss_pred hhhhccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeee
Q 010555 162 TRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWR 232 (507)
Q Consensus 162 n~i~~~n~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~ 232 (507)
.+||||+||+|++||+|||| .++|+|+||++|++||+||||+|+||++||+||+++|++|||||++|+|+
T Consensus 2 ~~mfHE~TQsD~aLy~RLVP-~~kG~R~Fs~iql~RL~kLGI~ktdP~~LT~eEi~~FaRLdIDP~TITw~ 71 (71)
T 2eo2_A 2 SSGSSGSTQTDKALYNRLVP-LVNGVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFARLNIDPATITWQ 71 (71)
T ss_dssp CCCSCCSSCSHHHHHHHHSC-CSSSSCCCCHHHHHHHHHHTCCCCSTTTCCHHHHHHHHHTCCCSTTCCCC
T ss_pred CccccccccchHHHHHhhCC-CCCCeeecCHHHHHHHHHcCCCCCCcccCCHHHHhhceecccCccceeeC
Confidence 47999999999999999999 56799999999999999999999999999999999999999999999996
No 4
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.20 E-value=0.00017 Score=69.82 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=44.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiKG 122 (507)
...|.|+||+..| ||||||+++.|+.+| ++.|+++.+. +|+|++.-.||+..
T Consensus 102 ~~~kvI~vts~kg---G~GKTtva~nLA~~l-A~~G~rVLLID~D~r~~~l~~~~~~~~ 156 (299)
T 3cio_A 102 TENNILMITGATP---DSGKTFVSSTLAAVI-AQSDQKVLFIDADLRRGYSHNLFTVSN 156 (299)
T ss_dssp CSCCEEEEEESSS---SSCHHHHHHHHHHHH-HHTTCCEEEEECCTTTCCHHHHTTCCC
T ss_pred CCCeEEEEECCCC---CCChHHHHHHHHHHH-HhCCCcEEEEECCCCCccHHHHcCCCC
Confidence 4579999998655 999999999999999 5889998765 79999988898764
No 5
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.13 E-value=0.00024 Score=67.91 Aligned_cols=52 Identities=29% Similarity=0.399 Sum_probs=44.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiKG 122 (507)
+..|.|+||+-.| ||||||++..|+.+| ++.|+++.+. +|.|++.-.||+..
T Consensus 80 ~~~kvI~vts~kg---G~GKTt~a~nLA~~l-A~~G~rVLLID~D~~~~~l~~~~~~~~ 134 (271)
T 3bfv_A 80 SAVQSIVITSEAP---GAGKSTIAANLAVAY-AQAGYKTLIVDGDMRKPTQHYIFNLPN 134 (271)
T ss_dssp CCCCEEEEECSST---TSSHHHHHHHHHHHH-HHTTCCEEEEECCSSSCCHHHHTTCCC
T ss_pred CCCeEEEEECCCC---CCcHHHHHHHHHHHH-HhCCCeEEEEeCCCCCccHHHHcCCCC
Confidence 4578999987555 999999999999999 5899998875 89999988898754
No 6
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.78 E-value=0.00055 Score=66.25 Aligned_cols=52 Identities=17% Similarity=0.340 Sum_probs=44.4
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiKG 122 (507)
.+.|.|+||+-.| ||||||+|..|+.+| +..|+++.+. +|.|++.-.||++.
T Consensus 90 ~~~kvI~vts~kg---G~GKTtva~nLA~~l-A~~G~rVLLID~D~~~~~l~~~~~~~~ 144 (286)
T 3la6_A 90 AQNNVLMMTGVSP---SIGMTFVCANLAAVI-SQTNKRVLLIDCDMRKGYTHELLGTNN 144 (286)
T ss_dssp TTCCEEEEEESSS---SSSHHHHHHHHHHHH-HTTTCCEEEEECCTTTCCHHHHHTCCC
T ss_pred CCCeEEEEECCCC---CCcHHHHHHHHHHHH-HhCCCCEEEEeccCCCCCHHHHhCCCC
Confidence 4579999998665 999999999999999 5889998765 78899988898753
No 7
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.96 E-value=0.004 Score=60.55 Aligned_cols=53 Identities=23% Similarity=0.132 Sum_probs=41.7
Q ss_pred CCC-cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEec--CCCCCCccccccC
Q 010555 67 ADG-YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR--QPSQGPTFGIKGG 123 (507)
Q Consensus 67 ~~G-klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lR--ePSlGP~FGiKGG 123 (507)
.+| |.|+||+- .-|+||||+|..|+.+| ++.|+++.+.== +||+.-.||.+.+
T Consensus 10 ~~gm~~i~v~sg---KGGvGKTTvA~~LA~~l-A~~G~rVLlvD~D~~~~l~~~l~~~~~ 65 (324)
T 3zq6_A 10 NKGKTTFVFIGG---KGGVGKTTISAATALWM-ARSGKKTLVISTDPAHSLSDSLEREIG 65 (324)
T ss_dssp BTTBCEEEEEEE---STTSSHHHHHHHHHHHH-HHTTCCEEEEECCSSCCHHHHHTSCCC
T ss_pred CCCCeEEEEEeC---CCCchHHHHHHHHHHHH-HHCCCcEEEEeCCCCcCHHHHhCCcCC
Confidence 458 77777765 55999999999999999 588999876532 5777778998753
No 8
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=95.89 E-value=0.0039 Score=57.15 Aligned_cols=50 Identities=28% Similarity=0.322 Sum_probs=38.6
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccccc
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiKG 122 (507)
+|.|.|++ +.-|+||||++..|+.+| ++.|+++.+. .++|++.-.||++.
T Consensus 2 ~~~I~v~s---~kgGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~l~~~l~~~~ 54 (263)
T 1hyq_A 2 VRTITVAS---GKGGTGKTTITANLGVAL-AQLGHDVTIVDADITMANLELILGMEG 54 (263)
T ss_dssp CEEEEEEE---SSSCSCHHHHHHHHHHHH-HHTTCCEEEEECCCSSSSHHHHTTCCC
T ss_pred CeEEEEEC---CCCCCCHHHHHHHHHHHH-HhCCCcEEEEECCCCCCCcchhcCCCC
Confidence 46677765 566999999999999999 5789987664 35677777777654
No 9
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.82 E-value=0.0042 Score=55.73 Aligned_cols=49 Identities=27% Similarity=0.348 Sum_probs=37.3
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccc
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiK 121 (507)
+|.|.|++ +.-|+||||++..|+.+| ++.|+++.+. .++|++.-.||+.
T Consensus 2 ~~~i~v~s---~kgGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~l~~~~~~~ 53 (237)
T 1g3q_A 2 GRIISIVS---GKGGTGKTTVTANLSVAL-GDRGRKVLAVDGDLTMANLSLVLGVD 53 (237)
T ss_dssp CEEEEEEC---SSTTSSHHHHHHHHHHHH-HHTTCCEEEEECCTTSCCHHHHTTCC
T ss_pred ceEEEEec---CCCCCCHHHHHHHHHHHH-HhcCCeEEEEeCCCCCCChhHhcCCC
Confidence 46777765 567999999999999999 5789887654 2556666667664
No 10
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.76 E-value=0.0041 Score=56.41 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=38.4
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccccc
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiKG 122 (507)
+|.|.|++ +.-|+||||+|..|+.+| ++.|+++.+. .++|++.-.||+..
T Consensus 2 ~~vi~v~s---~kgGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~~~~~lg~~~ 54 (260)
T 3q9l_A 2 ARIIVVTS---GKGGVGKTTSSAAIATGL-AQKGKKTVVIDFAIGLRNLDLIMGCER 54 (260)
T ss_dssp CEEEEEEC---SSTTSSHHHHHHHHHHHH-HHTTCCEEEEECCCSSCCHHHHTTCGG
T ss_pred CeEEEEEC---CCCCCcHHHHHHHHHHHH-HhCCCcEEEEECCCCCCChhHHhCCCC
Confidence 46777766 567999999999999999 5789997763 35677766676543
No 11
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.48 E-value=0.011 Score=53.19 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=31.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhc-CCcEEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTC 108 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~l-gk~a~~~ 108 (507)
+.+|.|.|++- .-|+||||++..|+.+| ++. |+++.+.
T Consensus 2 ~~~~vI~v~s~---kGGvGKTt~a~~LA~~l-a~~~g~~Vlli 40 (245)
T 3ea0_A 2 NAKRVFGFVSA---KGGDGGSCIAANFAFAL-SQEPDIHVLAV 40 (245)
T ss_dssp -CCEEEEEEES---STTSSHHHHHHHHHHHH-TTSTTCCEEEE
T ss_pred CCCeEEEEECC---CCCcchHHHHHHHHHHH-HhCcCCCEEEE
Confidence 35788888874 56999999999999999 577 9998765
No 12
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.23 E-value=0.014 Score=55.30 Aligned_cols=40 Identities=30% Similarity=0.265 Sum_probs=32.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRe 111 (507)
+.+|.|.|+ . .-|+||||+|+.|+.+| ++.|+++.+.=-.
T Consensus 39 ~~~~vI~v~---~-KGGvGKTT~a~nLA~~L-a~~G~~VlliD~D 78 (307)
T 3end_A 39 TGAKVFAVY---G-KGGIGKSTTSSNLSAAF-SILGKRVLQIGCD 78 (307)
T ss_dssp -CCEEEEEE---C-STTSSHHHHHHHHHHHH-HHTTCCEEEEEES
T ss_pred CCceEEEEE---C-CCCccHHHHHHHHHHHH-HHCCCeEEEEeCC
Confidence 568899887 2 78999999999999999 5889998766333
No 13
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=95.05 E-value=0.01 Score=52.92 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=28.0
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
|.|.||+ +.-|+||||+|.+|+.+| ++.|+++.+
T Consensus 2 k~I~v~s---~kgGvGKTt~a~nLa~~l-a~~G~rVll 35 (224)
T 1byi_A 2 KRYFVTG---TDTEVGKTVASCALLQAA-KAAGYRTAG 35 (224)
T ss_dssp EEEEEEE---SSTTSCHHHHHHHHHHHH-HHTTCCEEE
T ss_pred ceEEEEE---CCCCCCHHHHHHHHHHHH-HHCCCCEEE
Confidence 4566654 677999999999999999 588999775
No 14
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=95.05 E-value=0.0089 Score=58.47 Aligned_cols=51 Identities=24% Similarity=0.261 Sum_probs=40.2
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccccC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKGG 123 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiKGG 123 (507)
++|.|+||+ +.-|+||||+|..|+.+| ++.|+++.+. .| ||+.-.||++.+
T Consensus 17 ~~~~i~v~s---gkGGvGKTTva~~LA~~l-A~~G~rVllvD~D~~-~~l~~~l~~~~~ 70 (329)
T 2woo_A 17 TSLKWIFVG---GKGGVGKTTTSCSLAIQM-SKVRSSVLLISTDPA-HNLSDAFGTKFG 70 (329)
T ss_dssp TTCCEEEEE---CSSSSSHHHHHHHHHHHH-HTSSSCEEEEECCTT-CHHHHHHSSCCC
T ss_pred CCCEEEEEe---CCCCCcHHHHHHHHHHHH-HHCCCeEEEEECCCC-cCHHHHhCCcCC
Confidence 356666664 477999999999999999 5889998764 35 888888998753
No 15
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.88 E-value=0.018 Score=53.71 Aligned_cols=41 Identities=27% Similarity=0.485 Sum_probs=35.9
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
+|++|++.|+. |.||||.+--|.+.|. ..|.+.+...|||+
T Consensus 2 ~g~~i~~eG~~----gsGKsT~~~~l~~~l~-~~~~~~v~~~rep~ 42 (213)
T 4tmk_A 2 RSKYIVIEGLE----GAGKTTARNVVVETLE-QLGIRDMVFTREPG 42 (213)
T ss_dssp CCCEEEEEECT----TSCHHHHHHHHHHHHH-HTTCCCEEEEESSC
T ss_pred CCeEEEEECCC----CCCHHHHHHHHHHHHH-HcCCCcceeeeCCC
Confidence 38999999974 9999999999999994 77886678899995
No 16
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.86 E-value=0.024 Score=52.66 Aligned_cols=38 Identities=32% Similarity=0.091 Sum_probs=31.4
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
..+|.|.|++ +.-|+||||+|+.|+.+| ++.|+++.+.
T Consensus 16 ~~~~vI~v~s---~kGGvGKTT~a~nLA~~l-a~~G~~Vlli 53 (262)
T 2ph1_A 16 KIKSRIAVMS---GKGGVGKSTVTALLAVHY-ARQGKKVGIL 53 (262)
T ss_dssp TCSCEEEEEC---SSSCTTHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred cCCeEEEEEc---CCCCCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 3578888876 566999999999999999 5789987653
No 17
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.77 E-value=0.021 Score=52.72 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=29.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
+.+|.|.|++- .-|+||||+|..|+.+| + .|+++.+.
T Consensus 25 ~~~~vI~v~s~---kGGvGKTT~a~~LA~~l-a-~g~~Vlli 61 (267)
T 3k9g_A 25 KKPKIITIASI---KGGVGKSTSAIILATLL-S-KNNKVLLI 61 (267)
T ss_dssp -CCEEEEECCS---SSSSCHHHHHHHHHHHH-T-TTSCEEEE
T ss_pred CCCeEEEEEeC---CCCchHHHHHHHHHHHH-H-CCCCEEEE
Confidence 45888888764 46999999999999999 5 78886543
No 18
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.64 E-value=0.017 Score=53.40 Aligned_cols=38 Identities=32% Similarity=0.363 Sum_probs=31.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
+.+|.|.|++ +.-|+||||+|+.|+.+| ++.|+++.+.
T Consensus 4 ~~~~vI~v~s---~kGGvGKTt~a~~LA~~l-a~~g~~Vlli 41 (257)
T 1wcv_1 4 AKVRRIALAN---QKGGVGKTTTAINLAAYL-ARLGKRVLLV 41 (257)
T ss_dssp -CCCEEEECC---SSCCHHHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCCEEEEEEe---CCCCchHHHHHHHHHHHH-HHCCCCEEEE
Confidence 4578888876 456999999999999999 5779987764
No 19
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=94.58 E-value=0.016 Score=57.68 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=40.9
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhh--hcCCcEEEE---ecCCCCCCccccccC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGA--FLDKKVVTC---LRQPSQGPTFGIKGG 123 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~--~lgk~a~~~---lRePSlGP~FGiKGG 123 (507)
.++.|+||+- .-|+||||+|..|+.+| + +.|+++.+. +| ||+.-.||++.+
T Consensus 16 ~~~~i~v~sg---KGGvGKTTvaanLA~~l-A~~~~G~rVLLvD~D~~-~~l~~~lg~~~~ 71 (354)
T 2woj_A 16 TTHKWIFVGG---KGGVGKTTSSCSIAIQM-ALSQPNKQFLLISTDPA-HNLSDAFGEKFG 71 (354)
T ss_dssp SSCCEEEEEE---STTSSHHHHHHHHHHHH-HHHCTTSCEEEEECCSS-CCHHHHHTSCCC
T ss_pred CCcEEEEEeC---CCCCcHHHHHHHHHHHH-HHhcCCCeEEEEECCCC-CCHHHHhCCCCC
Confidence 4566666654 56999999999999999 6 789998875 54 888888999864
No 20
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.46 E-value=0.028 Score=53.51 Aligned_cols=43 Identities=26% Similarity=0.411 Sum_probs=37.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSl 114 (507)
..|++|++.|+. |.||||.+--|.+.|. ..|.+.+..+|||+-
T Consensus 25 ~~~~~i~~eG~~----GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~ 67 (236)
T 3lv8_A 25 MNAKFIVIEGLE----GAGKSTAIQVVVETLQ-QNGIDHITRTREPGG 67 (236)
T ss_dssp -CCCEEEEEEST----TSCHHHHHHHHHHHHH-HTTCCCEEEEESSCS
T ss_pred CCCeEEEEECCC----CCCHHHHHHHHHHHHH-hcCCCeeeeecCCCC
Confidence 359999999974 9999999999999995 789887788999963
No 21
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.33 E-value=0.023 Score=53.77 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=38.3
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhh-cCCcEEEEecCCCCC
Q 010555 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF-LDKKVVTCLRQPSQG 115 (507)
Q Consensus 66 ~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~-lgk~a~~~lRePSlG 115 (507)
...|++|+++|+. |.||||.+--|.+.|. . .|.+++...|||.-.
T Consensus 18 ~~~~~~i~~~G~~----g~GKst~~~~l~~~l~-~~~g~~v~~~treP~~t 63 (223)
T 3ld9_A 18 GPGSMFITFEGID----GSGKTTQSHLLAEYLS-EIYGVNNVVLTREPGGT 63 (223)
T ss_dssp -CCCEEEEEECST----TSSHHHHHHHHHHHHH-HHHCGGGEEEEESSCSS
T ss_pred CCCCeEEEEECCC----CCCHHHHHHHHHHHHh-hccCceeeEeeeCCCCC
Confidence 4579999999974 9999999999999995 6 798888768999733
No 22
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.24 E-value=0.036 Score=48.68 Aligned_cols=47 Identities=28% Similarity=0.353 Sum_probs=38.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FG 119 (507)
+.|++|++||. -|.||||++--|++.|+ ..+..+ ..+|+|..|..+|
T Consensus 8 ~~~~~I~l~G~----~GsGKST~~~~L~~~l~-~~~~~~-~~~~~~~~~~~~g 54 (212)
T 2wwf_A 8 KKGKFIVFEGL----DRSGKSTQSKLLVEYLK-NNNVEV-KHLYFPNRETGIG 54 (212)
T ss_dssp BCSCEEEEEES----TTSSHHHHHHHHHHHHH-HTTCCE-EEEESSCTTSHHH
T ss_pred hcCCEEEEEcC----CCCCHHHHHHHHHHHHH-HcCCcE-EEEecCCCCCcHH
Confidence 35899999996 59999999999999995 667777 6799997665443
No 23
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.16 E-value=0.044 Score=48.08 Aligned_cols=43 Identities=30% Similarity=0.411 Sum_probs=35.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlG 115 (507)
++|++|++||. -|.||||++--|++.|+ ..|..+ ..+|+|.-|
T Consensus 7 ~~~~~I~l~G~----~GsGKsT~~~~L~~~l~-~~~~~v-~~~~~~~~~ 49 (215)
T 1nn5_A 7 RRGALIVLEGV----DRAGKSTQSRKLVEALC-AAGHRA-ELLRFPERS 49 (215)
T ss_dssp CCCCEEEEEES----TTSSHHHHHHHHHHHHH-HTTCCE-EEEESSCTT
T ss_pred cCCcEEEEECC----CCCCHHHHHHHHHHHHH-HcCCcE-EEeeCCCCC
Confidence 35899999995 69999999999999995 667776 678998643
No 24
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.08 E-value=0.039 Score=54.45 Aligned_cols=53 Identities=28% Similarity=0.158 Sum_probs=41.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEec--CCCCCCccccccC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR--QPSQGPTFGIKGG 123 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lR--ePSlGP~FGiKGG 123 (507)
+.+|.|+|++- .-|+||||+|..|+.+| ++.|+++.++== +||+.-.||++-+
T Consensus 23 ~~~~~i~v~sg---KGGvGKTTvA~~LA~~l-A~~G~rVLlvD~D~~~~l~~~l~~~~~ 77 (349)
T 3ug7_A 23 KDGTKYIMFGG---KGGVGKTTMSAATGVYL-AEKGLKVVIVSTDPAHSLRDIFEQEFG 77 (349)
T ss_dssp SCSCEEEEEEC---SSSTTHHHHHHHHHHHH-HHSSCCEEEEECCTTCHHHHHHCSCCC
T ss_pred cCCCEEEEEeC---CCCccHHHHHHHHHHHH-HHCCCeEEEEeCCCCCCHHHHhCCCCC
Confidence 45777777765 45999999999999999 588999877632 5677778988753
No 25
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=93.42 E-value=0.016 Score=58.90 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=41.5
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE--EecCCCCCCccccccCCCCCCceee
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT--CLRQPSQGPTFGIKGGAAGGGYSQV 132 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~--~lRePSlGP~FGiKGGAaGGGysQV 132 (507)
+++++++ .-|+||||++..|+.+| +..|+++.+ + |+||+.-.||++-+ ..-.+|
T Consensus 3 ~i~~~~g----kGG~GKTt~a~~la~~l-a~~g~~vllvd~-~~~~l~~~~~~~~~---~~~~~v 58 (374)
T 3igf_A 3 LILTFLG----KSGVARTKIAIAAAKLL-ASQGKRVLLAGL-AEPVLPLLLEQTLT---PDPQQI 58 (374)
T ss_dssp EEEEEEC----SBHHHHHHHHHHHHHHH-HHTTCCEEEEEC-SCSHHHHHHTSCCC---SSCEEE
T ss_pred EEEEEeC----CCCCcHHHHHHHHHHHH-HHCCCCeEEEeC-CCCChHHhhCCCCC---CCcccc
Confidence 4555555 34999999999999999 588998743 5 99999999999843 344455
No 26
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.34 E-value=0.061 Score=49.92 Aligned_cols=40 Identities=33% Similarity=0.405 Sum_probs=34.9
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
.|++|++.|+ -|.||||.+--|.+.|. ..|.++ ...|||.
T Consensus 5 ~g~~i~~eG~----~gsGKsT~~~~l~~~l~-~~~~~v-~~~~~p~ 44 (213)
T 4edh_A 5 TGLFVTLEGP----EGAGKSTNRDYLAERLR-ERGIEV-QLTREPG 44 (213)
T ss_dssp CCEEEEEECS----TTSSHHHHHHHHHHHHH-TTTCCE-EEEESSC
T ss_pred CceEEEEEcC----CCCCHHHHHHHHHHHHH-HcCCCc-ccccCCC
Confidence 5899999996 49999999999999995 678876 6889995
No 27
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.22 E-value=0.065 Score=50.19 Aligned_cols=39 Identities=21% Similarity=0.077 Sum_probs=31.7
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
++|.|.|++.+ ..-|+||||+|+.|+.+| ++.|+++.+.
T Consensus 33 ~~~~i~v~~~s-~KGGvGKTT~a~nLA~~l-a~~G~rVlli 71 (298)
T 2oze_A 33 KNEAIVILNNY-FKGGVGKSKLSTMFAYLT-DKLNLKVLMI 71 (298)
T ss_dssp HCSCEEEEECC-SSSSSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCcEEEEEecc-CCCCchHHHHHHHHHHHH-HhCCCeEEEE
Confidence 47888887643 367999999999999999 5889987654
No 28
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.21 E-value=0.065 Score=52.96 Aligned_cols=51 Identities=22% Similarity=0.103 Sum_probs=38.8
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEe--cCCCCCCccccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL--RQPSQGPTFGIK 121 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~l--RePSlGP~FGiK 121 (507)
+++|.|.|++- .-|+||||+|..|+.+| ++.|+++.+.= ++|++.-.||..
T Consensus 141 ~~~kvIav~s~---KGGvGKTT~a~nLA~~L-a~~g~rVlliD~D~~~~l~~~lg~~ 193 (373)
T 3fkq_A 141 DKSSVVIFTSP---CGGVGTSTVAAACAIAH-ANMGKKVFYLNIEQCGTTDVFFQAE 193 (373)
T ss_dssp TSCEEEEEECS---STTSSHHHHHHHHHHHH-HHHTCCEEEEECCTTCCHHHHCCCS
T ss_pred CCceEEEEECC---CCCChHHHHHHHHHHHH-HhCCCCEEEEECCCCCCHHHHcCCC
Confidence 46888888764 56999999999999999 57899876533 556665556554
No 29
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.04 E-value=0.065 Score=46.69 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=27.5
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
|.|.|++ +.-|+||||++..|+.+| ++.|+++.+.
T Consensus 2 ~vi~v~s---~kgG~GKTt~a~~la~~l-a~~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLN---PKGGSGKTTAVINIATAL-SRSGYNIAVV 36 (206)
T ss_dssp EEEEECC---SSTTSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred eEEEEEe---CCCCccHHHHHHHHHHHH-HHCCCeEEEE
Confidence 3455554 577999999999999999 5789886653
No 30
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.86 E-value=0.085 Score=51.88 Aligned_cols=49 Identities=33% Similarity=0.412 Sum_probs=39.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGI 120 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGi 120 (507)
...|+|-|++ .=|.||||||+-|+-|| ++.|+++.+.==.|....++++
T Consensus 46 ~~aKVIAIaG----KGGVGKTTtavNLA~aL-A~~GkkVllID~Dpq~~s~~~l 94 (314)
T 3fwy_A 46 TGAKVFAVYG----KGGIGKSTTSSNLSAAF-SILGKRVLQIGCDPKHDSTFTL 94 (314)
T ss_dssp -CCEEEEEEC----STTSSHHHHHHHHHHHH-HHTTCCEEEEEESSSCCTTHHH
T ss_pred CCceEEEEEC----CCccCHHHHHHHHHHHH-HHCCCeEEEEecCCCCcccccc
Confidence 3578998884 89999999999999999 6999998877667755444444
No 31
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=92.69 E-value=0.049 Score=56.85 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=40.3
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccccC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKGG 123 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~---lRePSlGP~FGiKGG 123 (507)
..+++++++- -|+||||+|..|+.+| ++.|+++.+. . +||++-.||++-+
T Consensus 7 ~~~i~~~sgk----GGvGKTT~a~~lA~~l-A~~G~rVLlvd~D~-~~~l~~~l~~~~~ 59 (589)
T 1ihu_A 7 IPPYLFFTGK----GGVGKTSISCATAIRL-AEQGKRVLLVSTDP-ASNVGQVFSQTIG 59 (589)
T ss_dssp CCSEEEEECS----TTSSHHHHHHHHHHHH-HHTTCCEEEEECCT-TCCHHHHTTSCCC
T ss_pred CCEEEEEeCC----CcCHHHHHHHHHHHHH-HHCCCcEEEEECCC-CcCHHHHhCCccc
Confidence 4577777653 7999999999999999 5889997762 4 4888889998754
No 32
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.65 E-value=0.034 Score=49.45 Aligned_cols=40 Identities=28% Similarity=0.347 Sum_probs=30.7
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEec--CCCCCCccccc
Q 010555 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLR--QPSQGPTFGIK 121 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lgk~a~~~lR--ePSlGP~FGiK 121 (507)
.-|+||||+|..|+.+| ++.|+++.+.== |||+.-.||+.
T Consensus 8 kGGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~l~~~lg~~ 49 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIM-ASDYDKIYAVDGDPDSCLGQTLGLS 49 (254)
T ss_dssp SSSHHHHHHHHHHHHHH-TTTCSCEEEEEECTTSCHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHH-HHCCCeEEEEeCCCCcChHHHhCCC
Confidence 77999999999999999 588998765421 36666566654
No 33
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.45 E-value=0.097 Score=49.46 Aligned_cols=44 Identities=30% Similarity=0.468 Sum_probs=33.3
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhc----CCcEEEEecCCCCCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL----DKKVVTCLRQPSQGP 116 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~l----gk~a~~~lRePSlGP 116 (507)
.+|++|++.|+ -|.||||.+--|.+.|. .. |.++ ..+|||.-+|
T Consensus 23 ~~g~~I~~eG~----~GsGKsT~~~~l~~~l~-~~~~~~g~~v-~~~rep~~t~ 70 (227)
T 3v9p_A 23 ARGKFITFEGI----DGAGKTTHLQWFCDRLQ-ERLGPAGRHV-VVTREPGGTR 70 (227)
T ss_dssp CCCCEEEEECC----C---CHHHHHHHHHHHH-HHHGGGTCCE-EEEESSSSSH
T ss_pred cCCeEEEEECC----CCCCHHHHHHHHHHHHH-hhccccceee-eeecCCCCCh
Confidence 46999999996 59999999999999995 55 8776 5899995333
No 34
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.40 E-value=0.1 Score=52.21 Aligned_cols=52 Identities=25% Similarity=0.272 Sum_probs=41.8
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhh--hcCCcEEEE--ecCCCCCCccccccC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGA--FLDKKVVTC--LRQPSQGPTFGIKGG 123 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~--~lgk~a~~~--lRePSlGP~FGiKGG 123 (507)
+.-|++++++ .-|+||||++..|+.+| + +.|+++.+. =++||+.-.||++-|
T Consensus 16 ~~~~i~~~~g----kGGvGKTt~a~~lA~~l-a~~~~g~~vllid~D~~~~l~~~~~~~~~ 71 (348)
T 3io3_A 16 DSLKWIFVGG----KGGVGKTTTSSSVAVQL-ALAQPNEQFLLISTDPAHNLSDAFCQKFG 71 (348)
T ss_dssp TTCSEEEEEC----STTSSHHHHHHHHHHHH-HHHCTTSCEEEEECCSSCHHHHHHTSCCC
T ss_pred CCcEEEEEeC----CCCCcHHHHHHHHHHHH-HHhcCCCeEEEEECCCCCChHHHhccccC
Confidence 4447888887 45999999999999999 6 789987653 278888888998754
No 35
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.36 E-value=0.083 Score=48.47 Aligned_cols=34 Identities=32% Similarity=0.329 Sum_probs=27.3
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
|.|.| + ..-|+||||+|+.|+.+| ++.|+++.+.
T Consensus 2 ~vI~v---s-~KGGvGKTT~a~nLA~~l-a~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAI---Y-GKGGIGKSTTTQNLTSGL-HAMGKTIMVV 35 (269)
T ss_dssp EEEEE---E-ECTTSSHHHHHHHHHHHH-HTTTCCEEEE
T ss_pred cEEEE---e-cCCCCcHHHHHHHHHHHH-HHCCCcEEEE
Confidence 34555 3 378999999999999999 5889987764
No 36
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.34 E-value=0.09 Score=52.22 Aligned_cols=48 Identities=29% Similarity=0.342 Sum_probs=37.2
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE--ecCCCCCCcccccc
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC--LRQPSQGPTFGIKG 122 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~--lRePSlGP~FGiKG 122 (507)
+++++++ .-|+||||+|..|+.+| +..|+++.+. =++||+.-.||.+-
T Consensus 17 ~i~~~sg----kGGvGKTt~a~~lA~~l-a~~g~~vllid~D~~~~l~~~l~~~~ 66 (334)
T 3iqw_A 17 RWIFVGG----KGGVGKTTTSCSLAIQL-AKVRRSVLLLSTDPAHNLSDAFSQKF 66 (334)
T ss_dssp CEEEEEC----STTSSHHHHHHHHHHHH-TTSSSCEEEEECCSSCHHHHHHTSCC
T ss_pred EEEEEeC----CCCccHHHHHHHHHHHH-HhCCCcEEEEECCCCCChhHHhcccc
Confidence 4554444 66999999999999999 6889997653 26788888888764
No 37
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=92.32 E-value=0.11 Score=51.24 Aligned_cols=39 Identities=23% Similarity=0.460 Sum_probs=29.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhh-----hcCCcEEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGA-----FLDKKVVTC 108 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~-----~lgk~a~~~ 108 (507)
..+|.|.|++- .=|+||||+|+.|+.+|.. +.|+++.+.
T Consensus 106 ~~~~vIav~s~---KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 106 SEAYVIFISNL---KGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp CSCEEEEECCS---SSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred CCCeEEEEEeC---CCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 35778877654 5699999999999999942 368887653
No 38
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=92.22 E-value=0.089 Score=52.20 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=23.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhh-----hcCCcEEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGA-----FLDKKVVTC 108 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~-----~lgk~a~~~ 108 (507)
+.+|.|.|++- .=|+||||+|+-|+.+|.. +.|+++.+.
T Consensus 109 ~~~~vIav~s~---KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli 152 (403)
T 3ez9_A 109 KSPYVIFVVNL---KGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp CSCEEEEECCC-----------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred CCceEEEEEcC---CCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 45788877754 5699999999999999942 578988765
No 39
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.09 E-value=0.091 Score=49.22 Aligned_cols=34 Identities=41% Similarity=0.358 Sum_probs=27.5
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
|.|.| + ..-|+||||+|+.|+.+| ++.|+++.+.
T Consensus 3 kvIav---s-~KGGvGKTT~a~nLA~~L-a~~G~rVlli 36 (289)
T 2afh_E 3 RQCAI---Y-GKGGIGKSTTTQNLVAAL-AEMGKKVMIV 36 (289)
T ss_dssp EEEEE---E-ECTTSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred eEEEE---e-CCCcCcHHHHHHHHHHHH-HHCCCeEEEE
Confidence 45666 2 388999999999999999 5889998754
No 40
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=92.07 E-value=0.061 Score=50.35 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=29.9
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
|-|+||| |-.|+||||+|.||+++| ++.|+++.. +.|
T Consensus 5 k~i~Itg---t~t~vGKT~vt~~L~~~l-~~~G~~V~~--~KP 41 (228)
T 3of5_A 5 KKFFIIG---TDTEVGKTYISTKLIEVC-EHQNIKSLC--LKP 41 (228)
T ss_dssp EEEEEEE---SSSSSCHHHHHHHHHHHH-HHTTCCEEE--ECS
T ss_pred cEEEEEe---CCCCCCHHHHHHHHHHHH-HHCCCeeEE--ecc
Confidence 4577776 556999999999999999 588998764 555
No 41
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.02 E-value=0.12 Score=46.91 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=25.5
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
|.|.|++ ..-|+||||+++.|+.+| ++.| ++.+
T Consensus 1 kvI~v~s---~KGGvGKTT~a~~LA~~l-a~~g-~Vll 33 (209)
T 3cwq_A 1 MIITVAS---FKGGVGKTTTAVHLSAYL-ALQG-ETLL 33 (209)
T ss_dssp CEEEEEE---SSTTSSHHHHHHHHHHHH-HTTS-CEEE
T ss_pred CEEEEEc---CCCCCcHHHHHHHHHHHH-HhcC-CEEE
Confidence 3455554 567999999999999999 5778 6544
No 42
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=91.59 E-value=0.14 Score=48.97 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=31.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
+..|-|+||+ |-.|.||||+|.||+++| .+.|.++..
T Consensus 19 ~m~k~i~Itg---T~t~vGKT~vs~gL~~~L-~~~G~~V~~ 55 (242)
T 3qxc_A 19 FQGHMLFISA---TNTNAGKTTCARLLAQYC-NACGVKTIL 55 (242)
T ss_dssp CCCEEEEEEE---SSTTSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred hcCcEEEEEe---CCCCCcHHHHHHHHHHHH-HhCCCceEE
Confidence 4578899886 567999999999999999 588988654
No 43
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=91.27 E-value=0.13 Score=48.52 Aligned_cols=36 Identities=39% Similarity=0.428 Sum_probs=28.9
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.|.|.|++ +.-|+||||+|..|+.+| ++.|+++.+.
T Consensus 4 ~kvI~v~s---~KGGvGKTT~a~nLA~~L-a~~G~~Vlli 39 (286)
T 2xj4_A 4 TRVIVVGN---EKGGAGKSTIAVHLVTAL-LYGGAKVAVI 39 (286)
T ss_dssp CEEEEECC---SSSCTTHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CeEEEEEc---CCCCCCHHHHHHHHHHHH-HHCCCcEEEE
Confidence 45666654 678999999999999999 5889987643
No 44
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=91.03 E-value=0.09 Score=50.49 Aligned_cols=43 Identities=23% Similarity=0.160 Sum_probs=30.5
Q ss_pred hhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 60 LDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 60 l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
+.++.. ++=|-|+||+ |..|+||||+|.||+++| .+.|.++..
T Consensus 18 ~~~~~~-~~m~~i~Itg---t~t~vGKT~vt~gL~~~l-~~~G~~V~~ 60 (251)
T 3fgn_A 18 ENLYFQ-SHMTILVVTG---TGTGVGKTVVCAALASAA-RQAGIDVAV 60 (251)
T ss_dssp ----CC-SSCEEEEEEE---SSTTSCHHHHHHHHHHHH-HHTTCCEEE
T ss_pred HHHhcc-cCCCEEEEEe---CCCCCcHHHHHHHHHHHH-HHCCCeEEE
Confidence 344442 3346788775 667999999999999999 588988664
No 45
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.97 E-value=0.16 Score=52.24 Aligned_cols=36 Identities=31% Similarity=0.300 Sum_probs=29.3
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhc-CCcEEEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTC 108 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~l-gk~a~~~ 108 (507)
..+.|+|++ +-|+|||||+..|+.+|. .. |+++.+.
T Consensus 99 ~~~vI~ivG----~~GvGKTT~a~~LA~~l~-~~~G~kVllv 135 (433)
T 2xxa_A 99 PPAVVLMAG----LQGAGKTTSVGKLGKFLR-EKHKKKVLVV 135 (433)
T ss_dssp SSEEEEEEC----STTSSHHHHHHHHHHHHH-HTSCCCEEEE
T ss_pred CCeEEEEEC----CCCCCHHHHHHHHHHHHH-HhcCCeEEEE
Confidence 356888876 359999999999999994 66 9887764
No 46
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.84 E-value=0.18 Score=49.77 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=31.0
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
+.++.|+|++ |-|+|||||+.-|+..| +..|++..+.
T Consensus 103 ~~~~vI~ivG----~~G~GKTT~~~~LA~~l-~~~g~kVlli 139 (320)
T 1zu4_A 103 NRLNIFMLVG----VNGTGKTTSLAKMANYY-AELGYKVLIA 139 (320)
T ss_dssp TSCEEEEEES----STTSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 4588999997 37999999999999999 4678887654
No 47
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.48 E-value=0.21 Score=43.35 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=31.3
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
.|++|+++|. -|.||||++--|++.|+ ..| + ++..++|
T Consensus 3 ~~~~I~i~G~----~GsGKsT~~~~L~~~l~-~~g-~-~~~~~~~ 40 (213)
T 2plr_A 3 KGVLIAFEGI----DGSGKSSQATLLKDWIE-LKR-D-VYLTEWN 40 (213)
T ss_dssp CCEEEEEECC----TTSSHHHHHHHHHHHHT-TTS-C-EEEEETT
T ss_pred CCeEEEEEcC----CCCCHHHHHHHHHHHHh-hcC-C-EEEecCC
Confidence 3789999996 69999999999999995 556 3 5667888
No 48
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.44 E-value=0.21 Score=43.13 Aligned_cols=38 Identities=39% Similarity=0.446 Sum_probs=29.9
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSl 114 (507)
+|++||. -|.||||++--|++.|. ..|... +..|+|.-
T Consensus 2 ~I~l~G~----~GsGKsT~~~~L~~~l~-~~g~~v-~~~~~~~~ 39 (197)
T 2z0h_A 2 FITFEGI----DGSGKSTQIQLLAQYLE-KRGKKV-ILKREPGG 39 (197)
T ss_dssp EEEEECS----TTSSHHHHHHHHHHHHH-HCCC-E-EEEESSCS
T ss_pred EEEEECC----CCCCHHHHHHHHHHHHH-HCCCeE-EEeeCCCC
Confidence 6888884 69999999999999994 668775 57798763
No 49
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.89 E-value=0.19 Score=44.75 Aligned_cols=47 Identities=21% Similarity=0.122 Sum_probs=35.7
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~ 117 (507)
..|++|+++|. .|.||||++--|.+.+...+....-.+.|+|-.|..
T Consensus 10 ~~~~~i~l~G~----sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~ 56 (204)
T 2qor_A 10 ARIPPLVVCGP----SGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKET 56 (204)
T ss_dssp CCCCCEEEECC----TTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC
T ss_pred ccCCEEEEECC----CCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCC
Confidence 46899999984 699999999999887732244444567899987765
No 50
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.14 E-value=0.38 Score=41.85 Aligned_cols=42 Identities=26% Similarity=0.304 Sum_probs=30.6
Q ss_pred hhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 60 LDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 60 l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
|++......|++|+++|+ -|.||||++.-|++.|. ..|.+..
T Consensus 4 ~~~~~~~~~~~~i~l~G~----~GsGKsT~~~~L~~~l~-~~~~~~~ 45 (186)
T 2yvu_A 4 LTTYKCIEKGIVVWLTGL----PGSGKTTIATRLADLLQ-KEGYRVE 45 (186)
T ss_dssp ----CCCSCCEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred cccccccCCCcEEEEEcC----CCCCHHHHHHHHHHHHH-hcCCeEE
Confidence 344334457999999997 69999999999999995 5566643
No 51
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.04 E-value=0.25 Score=46.30 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=31.8
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlG 115 (507)
+|++|++.|+ -|.||||.+--|.+.|. . ....+|||.-|
T Consensus 4 ~g~~i~~eG~----~g~GKst~~~~l~~~l~-~----~~~~~~ep~~~ 42 (216)
T 3tmk_A 4 RGKLILIEGL----DRTGKTTQCNILYKKLQ-P----NCKLLKFPERS 42 (216)
T ss_dssp CCCEEEEEEC----SSSSHHHHHHHHHHHHC-S----SEEEEESSCTT
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHhc-c----cceEEEecCCC
Confidence 5999999997 49999999999999984 2 25678999433
No 52
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.85 E-value=0.37 Score=46.84 Aligned_cols=38 Identities=32% Similarity=0.301 Sum_probs=29.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
+.|+.|+++|- + |+|||||+.-|+..+...-|++..+.
T Consensus 103 ~~g~vi~lvG~--~--GsGKTTl~~~LA~~l~~~~G~~V~lv 140 (296)
T 2px0_A 103 IHSKYIVLFGS--T--GAGKTTTLAKLAAISMLEKHKKIAFI 140 (296)
T ss_dssp CCSSEEEEEES--T--TSSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCcEEEEECC--C--CCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 45889999884 2 99999999999999942368765543
No 53
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.01 E-value=0.38 Score=47.25 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=29.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
+.|++|++++- -|+|||||+.-|+..+ ..-|++..+.
T Consensus 102 ~~~~vi~ivG~----~GsGKTTl~~~LA~~l-~~~g~kV~lv 138 (306)
T 1vma_A 102 EPPFVIMVVGV----NGTGKTTSCGKLAKMF-VDEGKSVVLA 138 (306)
T ss_dssp SSCEEEEEECC----TTSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCCeEEEEEcC----CCChHHHHHHHHHHHH-HhcCCEEEEE
Confidence 45889999983 5999999999999999 4667776544
No 54
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=87.60 E-value=0.24 Score=48.93 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=27.6
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
|.|.|++ ..-|+||||+|+-|+.+| ++.|+++.+.
T Consensus 2 kvIav~s---~KGGvGKTT~a~nLA~~L-A~~G~rVLlI 36 (361)
T 3pg5_A 2 RTISFFN---NKGGVGKTTLSTNVAHYF-ALQGKRVLYV 36 (361)
T ss_dssp EEEEBCC---SSCCHHHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred eEEEEEc---CCCCCcHHHHHHHHHHHH-HhCCCcEEEE
Confidence 3444443 467999999999999999 5889997765
No 55
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=87.46 E-value=0.39 Score=49.83 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=29.5
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
.+++|+++|- -|+|||||+.-|+..| ...|++..+
T Consensus 96 ~~~vI~lvG~----~GsGKTTt~~kLA~~l-~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGV----QGSGKTTTAGKLAYFY-KKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCC----TTSCHHHHHHHHHHHH-HHTTCCEEE
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHH-HHcCCeEEE
Confidence 4789999974 3999999999999999 477888755
No 56
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=87.04 E-value=0.58 Score=42.66 Aligned_cols=39 Identities=21% Similarity=-0.054 Sum_probs=30.7
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
+.|.++| |.|.||||++..|...|. ..|.+..+.-+.|.
T Consensus 5 ~~i~i~G----~sGsGKTTl~~~L~~~l~-~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVG----YKHSGKTTLMEKWVAAAV-REGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEEC----CTTSSHHHHHHHHHHHHH-HTTCCEEEEECCC-
T ss_pred EEEEEEC----CCCCCHHHHHHHHHHhhH-hcCCeeeEEEeCCC
Confidence 4677777 459999999999999994 67888777666653
No 57
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.79 E-value=0.35 Score=44.15 Aligned_cols=39 Identities=18% Similarity=0.120 Sum_probs=30.5
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP 116 (507)
+|++|++.|+ -|.||||.+--|++.|. + +.++|||.-.+
T Consensus 1 ~~~~i~~~G~----~g~GKtt~~~~l~~~l~---~---~~~~~Ep~~~~ 39 (241)
T 2ocp_A 1 GPRRLSIEGN----IAVGKSTFVKLLTKTYP---E---WHVATEPVATW 39 (241)
T ss_dssp CCEEEEEEEC----TTSSHHHHHHHHHHHCT---T---SEEECCCGGGT
T ss_pred CCeEEEEEcC----CCCCHHHHHHHHHHHcC---C---Ceeeecchhhh
Confidence 3789999997 79999999999988883 2 45688885443
No 58
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=86.68 E-value=0.68 Score=44.58 Aligned_cols=42 Identities=21% Similarity=0.197 Sum_probs=34.8
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
++||+.++..- |-|.||||+++.++..| ...|+++.+..=+|
T Consensus 3 ~~g~l~I~~~~---kgGvGKTt~a~~la~~l-~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 3 ARGRLKVFLGA---APGVGKTYAMLQAAHAQ-LRQGVRVMAGVVET 44 (228)
T ss_dssp CCCCEEEEEES---STTSSHHHHHHHHHHHH-HHTTCCEEEEECCC
T ss_pred CCceEEEEEEC---CCCCcHHHHHHHHHHHH-HHCCCCEEEEEeCC
Confidence 46888766653 66999999999999999 57899988777776
No 59
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=86.46 E-value=0.36 Score=43.45 Aligned_cols=45 Identities=27% Similarity=0.468 Sum_probs=30.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlG 115 (507)
+.|++|.++| |.|.||||+.--|.+-+...+.......-|.|.-|
T Consensus 6 ~~g~~i~l~G----psGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~ 50 (208)
T 3tau_A 6 ERGLLIVLSG----PSGVGKGTVREAVFKDPETSFDYSISMTTRLPREG 50 (208)
T ss_dssp CCCCEEEEEC----CTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTT
T ss_pred CCCcEEEEEC----cCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCc
Confidence 5699999988 67999999998887666211333334455666544
No 60
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=86.32 E-value=0.54 Score=49.07 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=30.3
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.+++|+++|. -|+|||||+..|+..| ...|+++.+.
T Consensus 99 ~p~vIlivG~----~G~GKTTt~~kLA~~l-~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGI----QGSGKTTTVAKLARYF-QKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECC----TTSSHHHHHHHHHHHH-HTTTCCEEEE
T ss_pred CCeEEEEECc----CCCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 4679999884 5999999999999999 4779887654
No 61
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=86.27 E-value=0.56 Score=44.31 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=34.7
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~ 117 (507)
..|.++++|| |.|.||||..++++.-+. .-|+++.+. +|+.+..
T Consensus 10 ~~G~i~litG----~mGsGKTT~ll~~~~r~~-~~g~kVli~--~~~~d~r 53 (223)
T 2b8t_A 10 KIGWIEFITG----PMFAGKTAELIRRLHRLE-YADVKYLVF--KPKIDTR 53 (223)
T ss_dssp -CCEEEEEEC----STTSCHHHHHHHHHHHHH-HTTCCEEEE--EECCCGG
T ss_pred CCcEEEEEEC----CCCCcHHHHHHHHHHHHH-hcCCEEEEE--EeccCch
Confidence 4599999998 679999999999998883 568877643 7777653
No 62
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=86.14 E-value=0.49 Score=43.53 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=31.7
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
||+|.+-|+ -|.||||.+--|.+.|. + |.+ ++..|||.
T Consensus 2 ~kFI~~EG~----dGsGKsTq~~~L~~~L~-~-~~~-v~~~~eP~ 39 (205)
T 4hlc_A 2 SAFITFEGP----EGSGKTTVINEVYHRLV-K-DYD-VIMTREPG 39 (205)
T ss_dssp CEEEEEECC----TTSCHHHHHHHHHHHHT-T-TSC-EEEEESST
T ss_pred CCEEEEECC----CCCcHHHHHHHHHHHHH-C-CCC-EEEeeCCC
Confidence 789999986 59999999999999994 4 665 55689995
No 63
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.99 E-value=0.59 Score=43.31 Aligned_cols=43 Identities=28% Similarity=0.342 Sum_probs=34.7
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP 116 (507)
+.|++|+++|+ -|.||||.+--|++.|+ . |.+. +..|+|.-.|
T Consensus 24 ~~g~~i~i~G~----~GsGKsT~~~~l~~~l~-~-~~~~-~~~~~p~~~~ 66 (229)
T 4eaq_A 24 AMSAFITFEGP----EGSGKTTVINEVYHRLV-K-DYDV-IMTREPGGVP 66 (229)
T ss_dssp CCCEEEEEECC----TTSCHHHHHHHHHHHHT-T-TSCE-EEECTTTTCH
T ss_pred CCCeEEEEEcC----CCCCHHHHHHHHHHHHh-c-CCCc-eeecCCCCCc
Confidence 57999999996 49999999999999995 5 6654 5678887544
No 64
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=84.96 E-value=0.49 Score=41.18 Aligned_cols=41 Identities=20% Similarity=0.411 Sum_probs=30.5
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP 116 (507)
.|++|+++|+ -|.||||.+--|++.|+ |.+ +..+++|.-++
T Consensus 3 ~~~~I~l~G~----~GsGKsT~~~~L~~~l~---g~~-~~~~~~~~~~~ 43 (204)
T 2v54_A 3 RGALIVFEGL----DKSGKTTQCMNIMESIP---ANT-IKYLNFPQRST 43 (204)
T ss_dssp CCCEEEEECC----TTSSHHHHHHHHHHTSC---GGG-EEEEESSCTTS
T ss_pred CCcEEEEEcC----CCCCHHHHHHHHHHHHC---CCc-eEEEecCCCCC
Confidence 4889999996 69999999988877661 333 45678887444
No 65
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=84.82 E-value=1.8 Score=44.01 Aligned_cols=96 Identities=22% Similarity=0.237 Sum_probs=61.1
Q ss_pred CCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhc--cCCcEE-EEecCCCCCCH
Q 010555 389 SGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKA--YGANVV-VAVNMFATDSK 465 (507)
Q Consensus 389 sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~--fGvpvV-VAiN~F~tDT~ 465 (507)
.|.+||++|||.... ++..-|.|.. |+|+ ++.. -.+...+..+++ .|++|+ +++|.|.-|.+
T Consensus 250 ~g~~p~~vILv~~~~-~g~i~~~~~~----~~p~------l~~~----i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~ 314 (349)
T 2obn_A 250 RGSQPTQLVLVHRAG-QTHNGNNPHV----PIPP------LPEV----IRLYETVASGGGAFGTVPVVGIALNTAHLDEY 314 (349)
T ss_dssp HHHCCSEEEEEEETT-CCBCSSCTTS----BCCC------HHHH----HHHHHHHHHTTTTSCCCCEEEEEEECTTSCHH
T ss_pred HHcCCCeEEEEECCC-CceECCCCcc----CCCC------HHHH----HHHHHHHHHhhccCCCCcEEEEEEECCCCCHH
Confidence 356899999998743 3333344432 3332 2211 133334444455 788877 67899999988
Q ss_pred HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 466 AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 466 aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
++-+.++++-++.|++ +.+.+.. |+..|.+.++.
T Consensus 315 ~~~~~~~~ie~~~glP---v~d~~r~---g~~~l~~~~~~ 348 (349)
T 2obn_A 315 AAKEAIAHTIAETGLP---CTDVVRF---GADVLLDAVMQ 348 (349)
T ss_dssp HHHHHHHHHHHHHCSC---EECHHHH---CSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCC---EEEEecC---CHHHHHHHHhc
Confidence 8888888888889998 3466665 56667766653
No 66
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=84.47 E-value=0.73 Score=44.56 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=28.7
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.|+.|.+++ |-|+||||++.-|+..+ ...|++..+.
T Consensus 97 ~~~~i~i~g----~~G~GKTT~~~~la~~~-~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVG----LQGSGKTTTAAKLALYY-KGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEEC----CTTTTHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCeEEEEEC----CCCCCHHHHHHHHHHHH-HHcCCeEEEe
Confidence 578888885 45999999999999999 4667776544
No 67
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=84.34 E-value=0.49 Score=40.38 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=22.5
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+++|+++|. .|.||||++--|++.|+
T Consensus 3 ~~~i~l~G~----~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGG----SSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECC----TTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECC----CCCCHHHHHHHHHHhcC
Confidence 679999996 69999999999888773
No 68
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=84.01 E-value=2.2 Score=35.58 Aligned_cols=65 Identities=12% Similarity=0.034 Sum_probs=42.7
Q ss_pred hHHHHHHHHhc---cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 438 NLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 438 NL~~HIen~~~---fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
++.+.++.+++ -++|++|++|+..-..+.+ .+.+++++++.++. +..+. ++-|+|-.+|-+.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~ 171 (181)
T 2efe_B 102 RAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLF-FMETS--AKTATNVKEIFYEIAR 171 (181)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECC--SSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCE-EEEEE--CCCCCCHHHHHHHHHH
Confidence 44444444444 3899999999976533222 45677888888885 55554 4557888887776654
No 69
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=83.98 E-value=0.91 Score=44.16 Aligned_cols=35 Identities=29% Similarity=0.230 Sum_probs=28.7
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
++.|.+++ |-|+||||++.-|+..+ ...|++..+.
T Consensus 98 ~~vi~i~G----~~G~GKTT~~~~la~~~-~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVG----VQGTGKTTTAGKLAYFY-KKKGFKVGLV 132 (297)
T ss_dssp SEEEEEEC----SSCSSTTHHHHHHHHHH-HHTTCCEEEE
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 78888875 45999999999999999 4678876654
No 70
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=83.90 E-value=0.83 Score=40.12 Aligned_cols=44 Identities=30% Similarity=0.384 Sum_probs=33.0
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP 116 (507)
|+.|.++| |-|.||||+.--|..-+....|.....+-|.|.-|-
T Consensus 1 ~~ii~l~G----psGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge 44 (186)
T 3a00_A 1 SRPIVISG----PSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE 44 (186)
T ss_dssp CCCEEEES----SSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTC
T ss_pred CCEEEEEC----CCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCc
Confidence 34566665 679999999988887764356777778888888764
No 71
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=83.68 E-value=0.86 Score=47.10 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=28.5
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.++.|.+++ |-|+||||++..|+..|. ..|++..+.
T Consensus 97 ~~~vi~i~G----~~GsGKTT~~~~LA~~l~-~~g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVG----LQGSGKTTTAAKLALYYK-GKGRRPLLV 132 (425)
T ss_dssp SSEEEEEEC----CTTSSHHHHHHHHHHHHH-TTTCCEEEE
T ss_pred CCeEEEEEC----CCCCCHHHHHHHHHHHHH-HcCCeEEEe
Confidence 477888885 369999999999999994 667776543
No 72
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=83.00 E-value=0.77 Score=47.24 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=28.4
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.+.|+++| | -|+|||||+..|+..+. ..|+++.+.
T Consensus 99 ~~vI~ivG--~--~GvGKTTla~~La~~l~-~~G~kVllv 133 (432)
T 2v3c_C 99 QNVILLVG--I--QGSGKTTTAAKLARYIQ-KRGLKPALI 133 (432)
T ss_dssp CCCEEEEC--C--SSSSTTHHHHHHHHHHH-HHHCCEEEE
T ss_pred CeEEEEEC--C--CCCCHHHHHHHHHHHHH-HcCCeEEEE
Confidence 46888888 3 39999999999999995 668887654
No 73
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=82.35 E-value=0.73 Score=39.57 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.0
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.+++|+++|+ -|.||||++--|++.|
T Consensus 3 ~~~~~I~l~G~----~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGH----PATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEES----TTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHc
Confidence 35789999996 6999999998888777
No 74
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=82.26 E-value=1.1 Score=43.12 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=20.7
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+..+|.+|| |.|.||||++--|.+.|+
T Consensus 4 ~~~iIgItG----~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTG----SSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEES----CC---CCTHHHHHHHHHH
T ss_pred CceEEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 456899998 889999999999999885
No 75
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=82.04 E-value=0.81 Score=38.99 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.9
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|++|+++|+ .|.||||++--|++.|+
T Consensus 3 ~~~I~i~G~----~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGV----PGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECC----TTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECC----CCCCHHHHHHHHHHHHH
Confidence 679999995 69999999999988885
No 76
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=82.00 E-value=1.4 Score=37.71 Aligned_cols=38 Identities=29% Similarity=0.361 Sum_probs=29.0
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
++|++||. -|.||||.+--|++-|. ..|.. ++..|+|+
T Consensus 1 ~~I~l~G~----~GsGKsT~~~~L~~~l~-~~g~~-~i~~d~~~ 38 (195)
T 2pbr_A 1 MLIAFEGI----DGSGKTTQAKKLYEYLK-QKGYF-VSLYREPG 38 (195)
T ss_dssp CEEEEECS----TTSCHHHHHHHHHHHHH-HTTCC-EEEEESSC
T ss_pred CEEEEECC----CCCCHHHHHHHHHHHHH-HCCCe-EEEEeCCC
Confidence 36788885 69999999999999884 45765 44668874
No 77
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=81.86 E-value=0.96 Score=42.21 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=28.6
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
.+++|+++|+ -|.||||++.-|++.|. ..|...+
T Consensus 3 ~~~lIvl~G~----pGSGKSTla~~La~~L~-~~g~~~i 36 (260)
T 3a4m_A 3 DIMLIILTGL----PGVGKSTFSKNLAKILS-KNNIDVI 36 (260)
T ss_dssp CCEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCEEEEEEcC----CCCCHHHHHHHHHHHHH-hCCCEEE
Confidence 3679999997 69999999999999984 6777655
No 78
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=81.27 E-value=1.3 Score=40.66 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=31.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FG 119 (507)
..|+++++|| |.|.||||..++++.-+ ..-|+++.+. +|+...-+|
T Consensus 6 ~~g~i~v~~G----~mgsGKTT~ll~~a~r~-~~~g~kV~v~--k~~~d~r~~ 51 (191)
T 1xx6_A 6 DHGWVEVIVG----PMYSGKSEELIRRIRRA-KIAKQKIQVF--KPEIDNRYS 51 (191)
T ss_dssp TCCEEEEEEC----STTSSHHHHHHHHHHHH-HHTTCCEEEE--EEC------
T ss_pred CCCEEEEEEC----CCCCcHHHHHHHHHHHH-HHCCCEEEEE--EeccCccch
Confidence 4699999998 67999999999998877 3567776543 577664444
No 79
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=80.87 E-value=1.5 Score=39.55 Aligned_cols=38 Identities=18% Similarity=0.032 Sum_probs=30.6
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
+.|.++| |.|.||||+.-.|.+.| ...|.+....-+.|
T Consensus 7 ~~i~i~G----~sGsGKTTl~~~l~~~l-~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAA----WSGTGKTTLLKKLIPAL-CARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEEC----CTTSCHHHHHHHHHHHH-HHTTCCEEEEEECC
T ss_pred eEEEEEe----CCCCCHHHHHHHHHHhc-cccCCceeEEeeCC
Confidence 5777777 67999999999999999 46788776666665
No 80
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=80.85 E-value=4.2 Score=34.16 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=46.3
Q ss_pred HHhhhHHHHHHHHhc--cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCC-CeEEEccccccCchhhHHHHHhhh
Q 010555 434 AGCVNLARHIANTKA--YGANVVVAVNMFATDSKAELNAVRNAAMAAGA-FDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 434 ~G~~NL~~HIen~~~--fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~-~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.-+.++.+.++.++. .++|+|++.|+..-..+...+.+++++++.|+ . +..+.. +=|+|-.+|-+.++
T Consensus 117 ~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~gv~~l~~~l~ 187 (198)
T 3t1o_A 117 ESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFP-VLEAVA--TEGKGVFETLKEVS 187 (198)
T ss_dssp HHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSC-EEECBG--GGTBTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCce-EEEEec--CCCcCHHHHHHHHH
Confidence 345677777777744 68999999999875444455566788888888 5 555443 44677766655543
No 81
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=80.68 E-value=0.77 Score=38.84 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.3
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++|++|| +.|.||||++--|++.|+
T Consensus 3 ~~I~l~G----~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVG----ARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEES----CTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEC----CCCCCHHHHHHHHHHHhC
Confidence 5789998 579999999998888773
No 82
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=80.58 E-value=0.85 Score=41.50 Aligned_cols=37 Identities=41% Similarity=0.474 Sum_probs=29.1
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
+|.+-|+ -|.||||.+--|.+.| ...|.++ +..|||.
T Consensus 2 fI~~EG~----DGsGKsTq~~~L~~~L-~~~g~~v-~~treP~ 38 (197)
T 3hjn_A 2 FITFEGI----DGSGKSTQIQLLAQYL-EKRGKKV-ILKREPG 38 (197)
T ss_dssp EEEEECS----TTSSHHHHHHHHHHHH-HHTTCCE-EEEESSC
T ss_pred EEEEECC----CCCCHHHHHHHHHHHH-HHCCCcE-EEEECCC
Confidence 3444454 5999999999999999 4778875 6689996
No 83
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=80.08 E-value=1.5 Score=39.39 Aligned_cols=43 Identities=26% Similarity=0.448 Sum_probs=29.5
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcc
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTF 118 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~F 118 (507)
|+++++|| |.|.||||..++++.-+ ...|+++.+ =+|+...-+
T Consensus 3 g~i~vi~G----~~gsGKTT~ll~~~~~~-~~~g~~v~~--~~~~~d~r~ 45 (184)
T 2orw_A 3 GKLTVITG----PMYSGKTTELLSFVEIY-KLGKKKVAV--FKPKIDSRY 45 (184)
T ss_dssp CCEEEEEE----STTSSHHHHHHHHHHHH-HHTTCEEEE--EEEC-----
T ss_pred cEEEEEEC----CCCCCHHHHHHHHHHHH-HHCCCeEEE--Eeecccccc
Confidence 78999998 57999999999998877 355776543 356665443
No 84
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=79.75 E-value=1.2 Score=38.99 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=27.3
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlG 115 (507)
.|++|.++| |.|.||||+.--|..-+...........-|+|..|
T Consensus 4 ~g~~i~i~G----psGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~g 47 (180)
T 1kgd_A 4 MRKTLVLLG----AHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKD 47 (180)
T ss_dssp CCCEEEEEC----CTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---
T ss_pred CCCEEEEEC----CCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCcc
Confidence 588999988 67999999988876655211222333445666654
No 85
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=79.68 E-value=0.95 Score=38.94 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=21.8
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.++.|+++|. .|.||||++.-|++.|
T Consensus 4 ~~~~i~l~G~----~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGL----MGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECS----TTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECC----CCCCHHHHHHHHHHHh
Confidence 3678999985 7999999999888877
No 86
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=79.65 E-value=1.3 Score=46.86 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=27.0
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.+.|++++- | |+|||||+.-|+..|. ..|++..+.
T Consensus 101 ~~vI~ivG~---~-GvGKTTl~~kLA~~l~-~~G~kVllV 135 (504)
T 2j37_W 101 QNVIMFVGL---Q-GSGKTTTCSKLAYYYQ-RKGWKTCLI 135 (504)
T ss_dssp -EEEEEECS---T-TSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CeEEEEECC---C-CCCHHHHHHHHHHHHH-hCCCeEEEE
Confidence 557777764 2 9999999999999995 668876544
No 87
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=79.60 E-value=1.4 Score=38.03 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=27.0
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+.|++|.+||. -|.||||++--|++.|. ..|...+
T Consensus 3 ~~g~~i~l~G~----~GsGKST~~~~L~~~l~-~~g~~~i 37 (179)
T 2pez_A 3 MRGCTVWLTGL----SGAGKTTVSMALEEYLV-CHGIPCY 37 (179)
T ss_dssp -CCEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCCcEEEEECC----CCCCHHHHHHHHHHHHh-hCCCcEE
Confidence 46899999996 59999999999988873 3465544
No 88
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=79.02 E-value=1.1 Score=38.50 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=22.9
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++++|+++|. -|.||||++--|++.|+
T Consensus 8 ~~~~I~l~G~----~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGG----PGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEEC----TTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 5789999995 69999999988888773
No 89
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=78.79 E-value=1.7 Score=36.98 Aligned_cols=30 Identities=30% Similarity=0.253 Sum_probs=23.7
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
++|+++|+ -|.||||++--|++.|+ ..|..
T Consensus 2 ~~I~i~G~----~GsGKsT~~~~L~~~l~-~~g~~ 31 (194)
T 1nks_A 2 KIGIVTGI----PGVGKSTVLAKVKEILD-NQGIN 31 (194)
T ss_dssp EEEEEEEC----TTSCHHHHHHHHHHHHH-TTTCC
T ss_pred eEEEEECC----CCCCHHHHHHHHHHHHH-hcCce
Confidence 47888885 69999999999999995 34443
No 90
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=78.73 E-value=1.3 Score=40.14 Aligned_cols=42 Identities=21% Similarity=0.143 Sum_probs=30.7
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
|+-..++.++. +.|.||||++.-|+.+| + .|++..+.=-.|.
T Consensus 11 ~~~~~i~~~~G-kgGvGKTTl~~~La~~l-~-~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 11 GMASMIVVFVG-TAGSGKTTLTGEFGRYL-E-DNYKVAYVNLDTG 52 (262)
T ss_dssp TCCCEEEEEEC-STTSSHHHHHHHHHHHH-T-TTSCEEEEECCSS
T ss_pred CcceEEEEEeC-CCCCCHHHHHHHHHHHH-H-CCCeEEEEeCCCC
Confidence 44444444443 67999999999999999 5 7888776655653
No 91
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=78.71 E-value=0.94 Score=38.88 Aligned_cols=26 Identities=38% Similarity=0.422 Sum_probs=22.2
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.|+.|+++|. -|.||||++--|++.|
T Consensus 3 ~g~~I~l~G~----~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGP----PGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECC----TTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHh
Confidence 4788999995 6999999998888776
No 92
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=78.64 E-value=1.1 Score=37.62 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=19.9
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
++|+++| |-|.||||++--|++.|
T Consensus 2 ~~i~l~G----~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEG----PDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEEC----SSSSSHHHHHHHHHHHH
T ss_pred eEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 3688888 57999999998888777
No 93
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=78.54 E-value=0.59 Score=40.93 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=28.8
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
++|+++| |-|.||||.+--|.+.|. ..|.+ +..+|+|.
T Consensus 1 ~~I~i~G----~~GsGKsTl~~~L~~~l~-~~g~~-v~~~~~~~ 38 (214)
T 1gtv_A 1 MLIAIEG----VDGAGKRTLVEKLSGAFR-AAGRS-VATLAFPR 38 (214)
T ss_dssp CEEEEEE----EEEEEHHHHHHHHHHHHH-EEEEE-EEEEESSE
T ss_pred CEEEEEc----CCCCCHHHHHHHHHHHHH-hcCCe-EEEEeecC
Confidence 4678888 469999999999999994 44544 45678765
No 94
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=78.46 E-value=1.1 Score=40.43 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=24.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHH-HHHhhhcCCcEEEEecCCCCCCc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKVVTCLRQPSQGPT 117 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~-qaL~~~lgk~a~~~lRePSlGP~ 117 (507)
+.|++|.++| |-|.||||+.--|+ .-+. .+....-..-|.|.-|-.
T Consensus 25 ~~G~ii~l~G----p~GsGKSTl~~~L~~~~~~-~~~~~~~~~~~~~~~g~~ 71 (231)
T 3lnc_A 25 SVGVILVLSS----PSGCGKTTVANKLLEKQKN-NIVKSVSVTTRAARKGEK 71 (231)
T ss_dssp ECCCEEEEEC----SCC----CHHHHHHC-----CEEECCCEESSCCCTTCC
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHhcCCC-CcccccccCCCCCCcccc
Confidence 4689999988 56999999998887 5442 222222344566665533
No 95
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=78.17 E-value=2 Score=40.89 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=32.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FG 119 (507)
..|++.++|| |.|.||||..++++.-. ..-|+++.+. +|+.+.-+|
T Consensus 26 ~~G~l~vitG----~MgsGKTT~lL~~a~r~-~~~g~kVli~--k~~~d~R~g 71 (214)
T 2j9r_A 26 QNGWIEVICG----SMFSGKSEELIRRVRRT-QFAKQHAIVF--KPCIDNRYS 71 (214)
T ss_dssp CSCEEEEEEC----STTSCHHHHHHHHHHHH-HHTTCCEEEE--ECC------
T ss_pred CCCEEEEEEC----CCCCcHHHHHHHHHHHH-HHCCCEEEEE--EeccCCcch
Confidence 5699999998 68999999999998877 4567776643 588776554
No 96
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=78.14 E-value=1 Score=38.36 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=18.2
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.+++|+++|. -|.||||++--|++.|+
T Consensus 4 ~~~~I~l~G~----~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGP----FGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECC----C----CHHHHHHHHHST
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHhcC
Confidence 4789999996 69999999988877663
No 97
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=77.89 E-value=1.6 Score=45.61 Aligned_cols=49 Identities=16% Similarity=0.035 Sum_probs=29.7
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEec--CCCCCCcccc
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR--QPSQGPTFGI 120 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lR--ePSlGP~FGi 120 (507)
.++.|+|++ .+-|+||||++..|+.+| ++.|+++.+.=- ++|+.-.||.
T Consensus 325 ~~~~~~~~~---~~~g~Gktt~a~~lA~~l-~~~g~~vllvD~Dp~~~l~~~l~~ 375 (589)
T 1ihu_A 325 NEHGLIMLM---GKGGVGKTTMAAAIAVRL-ADMGFDVHLTTSDPAAHLSMTLNG 375 (589)
T ss_dssp TSCEEEEEE---CSTTSSHHHHHHHHHHHH-HHTTCCEEEEESCCC---------
T ss_pred cCCeEEEEe---cCCCCChhhHHHHHHHHH-HHCCCcEEEEeCCCcccHhHHhcc
Confidence 345555543 456999999999999999 588999877522 3566666765
No 98
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=77.82 E-value=2.8 Score=35.71 Aligned_cols=66 Identities=14% Similarity=0.020 Sum_probs=35.8
Q ss_pred hhHHHHHHHHhc------cCCcEEEEecCCCCCC-HHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 437 VNLARHIANTKA------YGANVVVAVNMFATDS-KAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 437 ~NL~~HIen~~~------fGvpvVVAiN~F~tDT-~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.++.+.++.+++ .++|+||++|+..-.. +.+ .+.+++++++.|+. +..++...+ |+|-.+|-+.++
T Consensus 113 ~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~-~~gi~~l~~~i~ 187 (208)
T 2yc2_C 113 ESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD-FFDVSANPP-GKDADAPFLSIA 187 (208)
T ss_dssp HHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE-EEECCC--------CHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE-EEEeccCCC-CcCHHHHHHHHH
Confidence 345555555554 5899999999976543 222 35677888888985 666655442 566655554443
No 99
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=77.70 E-value=5.6 Score=32.78 Aligned_cols=65 Identities=9% Similarity=-0.040 Sum_probs=39.2
Q ss_pred hHHHHHHHHhcc----CCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 438 NLARHIANTKAY----GANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 438 NL~~HIen~~~f----GvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
++...++.+.++ ++|+|+++|+..-..+.+ .+..++++.+.|.. +..+. ++=|+|-.+|-+.+++
T Consensus 95 ~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~ 165 (175)
T 2nzj_A 95 SASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCK-FIETS--ATLQHNVAELFEGVVR 165 (175)
T ss_dssp HHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSE-EEECB--TTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCe-EEEEe--cCCCCCHHHHHHHHHH
Confidence 444444444443 899999999976543222 34556777888875 55444 4556777777666543
No 100
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=77.61 E-value=1.4 Score=39.50 Aligned_cols=45 Identities=33% Similarity=0.407 Sum_probs=29.4
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP 116 (507)
.|+.|.+.| |-|.||||+.--|..-+....|.......|.|..|-
T Consensus 3 ~g~~i~lvG----psGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~ 47 (198)
T 1lvg_A 3 GPRPVVLSG----PSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE 47 (198)
T ss_dssp --CCEEEEC----CTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC
T ss_pred CCCEEEEEC----CCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc
Confidence 477888877 569999999887765542234544445567777663
No 101
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=77.59 E-value=1.3 Score=39.15 Aligned_cols=33 Identities=36% Similarity=0.326 Sum_probs=27.3
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
+.|.+|.++| |.|.||||++--|++.|. .-|..
T Consensus 23 ~~g~~i~l~G----~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 23 QKGCVIWVTG----LSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp SCCEEEEEEC----STTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHH-hcCce
Confidence 5699999998 569999999999999984 44544
No 102
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=77.42 E-value=1.4 Score=39.06 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=22.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|+.|+++|. -|.||||++.-|++.|
T Consensus 23 ~~~~~i~l~G~----~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTGY----MGAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEECC----TTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcC----CCCCHHHHHHHHHHHc
Confidence 45889999984 6999999998888777
No 103
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=77.35 E-value=2.4 Score=36.15 Aligned_cols=65 Identities=15% Similarity=0.052 Sum_probs=41.8
Q ss_pred hHHHHHHHHhc---cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 438 NLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 438 NL~~HIen~~~---fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
++.+.++.+++ -++|++|++|+-.-..+.+ .+.+++++++.|+. +..+. ++-|+|-.+|-+.+++
T Consensus 112 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~ 181 (189)
T 2gf9_A 112 AVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFE-FFEAS--AKENINVKQVFERLVD 181 (189)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECB--TTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHH
Confidence 44444555554 4899999999976543222 34567788888885 55444 4557787777766543
No 104
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=76.92 E-value=1.8 Score=45.85 Aligned_cols=36 Identities=36% Similarity=0.403 Sum_probs=30.8
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
..++++||| |.|.|||||...|...+ ...|++..+|
T Consensus 203 ~~~~~~I~G----~pGTGKTt~i~~l~~~l-~~~g~~Vl~~ 238 (574)
T 3e1s_A 203 GHRLVVLTG----GPGTGKSTTTKAVADLA-ESLGLEVGLC 238 (574)
T ss_dssp TCSEEEEEC----CTTSCHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred hCCEEEEEc----CCCCCHHHHHHHHHHHH-HhcCCeEEEe
Confidence 367999999 89999999999999999 4778877665
No 105
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=76.59 E-value=1.8 Score=40.26 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=33.1
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP 116 (507)
.|++|+++| |.|.||||+..-|.+-+...+....-.+-|+|.-|-
T Consensus 18 ~g~~ivl~G----PSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE 62 (197)
T 3ney_A 18 GRKTLVLIG----ASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE 62 (197)
T ss_dssp SCCEEEEEC----CTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC
T ss_pred CCCEEEEEC----cCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe
Confidence 689999987 679999999888876652234444556778887763
No 106
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=76.42 E-value=3.2 Score=34.91 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=37.0
Q ss_pred hHHHHHHHHhc---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~---fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++.+.++.+++ .++|+||++|+..-..+. ..+.++++|++.|+. +..++. +=|+|-.+|-+.++
T Consensus 98 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa--~~~~~i~~l~~~l~ 166 (183)
T 2fu5_C 98 NIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK-FMETSA--KANINVENAFFTLA 166 (183)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE-EEECCC-----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCe-EEEEeC--CCCCCHHHHHHHHH
Confidence 44444555444 489999999997653221 234566788888885 555544 34677766655554
No 107
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=76.10 E-value=3.9 Score=33.74 Aligned_cols=63 Identities=10% Similarity=0.065 Sum_probs=40.4
Q ss_pred HHHHHHHHhccCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 439 LARHIANTKAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 439 L~~HIen~~~fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
+...+......++|+++++|+..-..+. ..+.+++++++.|+. +..+.. +=|+|-.+|-+.++
T Consensus 109 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~gi~~l~~~l~ 173 (179)
T 1z0f_A 109 WLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL-FLEASA--KTGENVEDAFLEAA 173 (179)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCT--TTCTTHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeC--CCCCCHHHHHHHHH
Confidence 3344555555789999999997653322 235677888888885 555543 44677766655544
No 108
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=75.65 E-value=1.7 Score=37.62 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=21.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|++|.++|. -|.||||++--|+.-+
T Consensus 4 ~~g~~i~l~G~----~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGP----SGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECS----TTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECC----CCCCHHHHHHHHHHhh
Confidence 45899999984 6999999987776544
No 109
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=75.56 E-value=5.6 Score=32.52 Aligned_cols=54 Identities=9% Similarity=-0.020 Sum_probs=34.8
Q ss_pred ccCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 448 AYGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 448 ~fGvpvVVAiN~F~tDT-~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
..++|+++++|+..-+. ....+.+.+++++.|+. +..++. +=|+|-.+|-+.+.
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 106 NDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSA--KNDDNVNEIFFTLA 160 (170)
T ss_dssp CTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC-EEECBT--TTTBSHHHHHHHHH
T ss_pred CCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCe-EEEEEC--CCCCCHHHHHHHHH
Confidence 35899999999975421 12234556778888886 555543 44677776665544
No 110
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=75.39 E-value=6.2 Score=33.38 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=37.8
Q ss_pred HHHHhccCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 443 IANTKAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 443 Ien~~~fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
+.....-++|+|+++|+..-..+. +.+..++++++.++. +..+. +.-|+|-.+|-+.++
T Consensus 114 i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 114 IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETS--AKNATNVEQSFMTMA 174 (196)
T ss_dssp HHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEEEC--TTTCTTHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCc-EEEEe--CCCCCCHHHHHHHHH
Confidence 333334489999999997643332 234567888889987 55444 355777776655443
No 111
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=75.19 E-value=4.6 Score=34.37 Aligned_cols=57 Identities=11% Similarity=-0.043 Sum_probs=37.8
Q ss_pred ccCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcccc-ccCchhhHHHHHhhhh
Q 010555 448 AYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHH-AHGGKGAFKEPVRMLH 505 (507)
Q Consensus 448 ~fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~w-a~GGeGa~~LA~~v~~ 505 (507)
..++|++|++|+..-..+. ..+.+++++++.|+. +..+... ..|.+|-.++-+.+++
T Consensus 125 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~~~~i~~l~~~l~~ 184 (189)
T 1z06_A 125 ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP-LFETSAKNPNDNDHVEAIFMTLAH 184 (189)
T ss_dssp CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEECCSSSGGGGSCHHHHHHHHC-
T ss_pred CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCE-EEEEeCCcCCcccCHHHHHHHHHH
Confidence 4689999999997653222 234567888888986 5555544 3455887777666543
No 112
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=75.15 E-value=1.5 Score=37.65 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=22.0
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.++.|+++|. -|.||||++--|++.|
T Consensus 10 ~~~~i~i~G~----~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGT----PGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECS----TTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeC----CCCCHHHHHHHHHHHh
Confidence 4778999994 6999999998888776
No 113
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=74.98 E-value=1.9 Score=36.77 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=21.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
..|+.|+++|. -|.||||++--|++-+
T Consensus 6 ~~g~~i~l~G~----~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGV----SGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECS----TTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcC----CCCCHHHHHHHHHHhh
Confidence 46899999984 6999999987776655
No 114
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=74.84 E-value=9.1 Score=31.32 Aligned_cols=66 Identities=8% Similarity=-0.058 Sum_probs=40.7
Q ss_pred hhHHHHHHHHhc----cCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 437 VNLARHIANTKA----YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 437 ~NL~~HIen~~~----fGvpvVVAiN~F~tDT--~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.++...++.+.+ .++|+|++.|+-.-.. +-..+...+++.+.++. +..++ ++=|+|-.+|-+.+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~ 160 (166)
T 3q72_A 89 EKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK-FIETS--AALHHNVQALFEGVVR 160 (166)
T ss_dssp HHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCE-EEECB--GGGTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCc-EEEec--cCCCCCHHHHHHHHHH
Confidence 344444444444 4899999999976432 22334556788888885 54444 4456787777666543
No 115
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=74.81 E-value=2.6 Score=37.57 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=28.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+.|++|+++|+ -|.||||++--|++.|+...|.+.+
T Consensus 23 ~~~~~i~~~G~----~GsGKsT~~~~l~~~l~~~~g~~~~ 58 (211)
T 1m7g_A 23 QRGLTIWLTGL----SASGKSTLAVELEHQLVRDRRVHAY 58 (211)
T ss_dssp SSCEEEEEECS----TTSSHHHHHHHHHHHHHHHHCCCEE
T ss_pred CCCCEEEEECC----CCCCHHHHHHHHHHHhccccCCcEE
Confidence 56999999986 6999999999999998424465443
No 116
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=74.59 E-value=1.8 Score=38.28 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=22.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|++|.++| |-|.||||++--|+.-+
T Consensus 27 ~~g~~i~l~G----~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMG----VSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEEC----CTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHhh
Confidence 5699999998 46999999998887665
No 117
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=74.45 E-value=2.1 Score=42.90 Aligned_cols=41 Identities=29% Similarity=0.375 Sum_probs=31.7
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
.|.+|+|+| |-|.|||||.--|..-+. .-....++++.+|.
T Consensus 122 ~~g~i~I~G----ptGSGKTTlL~~l~g~~~-~~~~~~i~t~ed~~ 162 (356)
T 3jvv_A 122 PRGLVLVTG----PTGSGKSTTLAAMLDYLN-NTKYHHILTIEDPI 162 (356)
T ss_dssp SSEEEEEEC----STTSCHHHHHHHHHHHHH-HHCCCEEEEEESSC
T ss_pred CCCEEEEEC----CCCCCHHHHHHHHHhccc-CCCCcEEEEccCcH
Confidence 455999998 569999999999988884 54445677888875
No 118
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=74.41 E-value=1.6 Score=37.20 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.2
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+++|+++|. -|.||||++--|++.|
T Consensus 3 ~~~I~l~G~----~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGG----PGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECC----TTSSHHHHHHHHHHHH
T ss_pred ceEEEEECC----CCCCHHHHHHHHHHHh
Confidence 578999985 5999999998887776
No 119
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=74.23 E-value=7.9 Score=35.82 Aligned_cols=53 Identities=11% Similarity=0.037 Sum_probs=38.6
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHc-CCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSKAELNAVRNAAMAA-GAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~-G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
-++|+||+.|+-.-..+.+++.+++++++. ++. ++.+. ++=|+|-.+|=+.++
T Consensus 197 ~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~e~S--Ak~g~gv~elf~~l~ 250 (255)
T 3c5h_A 197 TKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQ-VVETS--ARSNVNVDLAFSTLV 250 (255)
T ss_dssp TTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCC-EEECB--TTTTBSHHHHHHHHH
T ss_pred CCCCEEEEEEcccccccHHHHHHHHHHHhcCCCe-EEEEE--CCCCCCHHHHHHHHH
Confidence 479999999998776777888888898864 775 44444 455677776665554
No 120
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=73.76 E-value=3 Score=36.29 Aligned_cols=33 Identities=15% Similarity=0.320 Sum_probs=26.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
+.++-|+++| |.|.||||++..+++.+. .-|.+
T Consensus 50 ~~~~~~ll~G----~~G~GKT~la~~l~~~~~-~~~~~ 82 (242)
T 3bos_A 50 DGVQAIYLWG----PVKSGRTHLIHAACARAN-ELERR 82 (242)
T ss_dssp CSCSEEEEEC----STTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCCeEEEEC----CCCCCHHHHHHHHHHHHH-HcCCe
Confidence 4678899987 679999999999999995 44544
No 121
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=73.65 E-value=5.9 Score=33.04 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=39.9
Q ss_pred hHHHHHHHHhc----cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTKA----YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~----fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++...++.++. .++|+||++|+..-..+. ..+.+++++++.|+. +..++ ++=|+|-.+|-+.++
T Consensus 111 ~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l~ 180 (195)
T 3bc1_A 111 NVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP-YFETS--AANGTNISHAIEMLL 180 (195)
T ss_dssp THHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCC-EEEEE--CCCCCCHHHHHHHHH
Confidence 34444444443 689999999997653321 235567888888886 55444 344677766665554
No 122
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=73.59 E-value=1.9 Score=37.18 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=22.2
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.+++|+++|. .|.||||++--|++.|
T Consensus 11 ~~~~I~l~G~----~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGG----PGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEEC----TTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECC----CCCCHHHHHHHHHHHh
Confidence 3679999995 6999999998888877
No 123
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=73.13 E-value=10 Score=31.69 Aligned_cols=57 Identities=11% Similarity=-0.038 Sum_probs=37.7
Q ss_pred HhccCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEcccccc-CchhhHHHHHhhhh
Q 010555 446 TKAYGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAH-GGKGAFKEPVRMLH 505 (507)
Q Consensus 446 ~~~fGvpvVVAiN~F~tDT--~aEi~~v~~~~~~~G~~~~~~s~~wa~-GGeGa~~LA~~v~~ 505 (507)
....++|+|+++|+..-.. ....+.++++|++.++. +..+. ++ -|+|-.+|-+.+++
T Consensus 119 ~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~~~v~~l~~~l~~ 178 (183)
T 3kkq_A 119 KDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP-YIETS--AKDPPLNVDKTFHDLVR 178 (183)
T ss_dssp HTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC-EEEEB--CSSSCBSHHHHHHHHHH
T ss_pred cCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe-EEEec--cCCCCCCHHHHHHHHHH
Confidence 3457999999999976432 22334567888888886 55444 34 67787777665543
No 124
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=73.06 E-value=2.2 Score=40.88 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.0
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
..+++|+++| |.|.||||++--|.+.+
T Consensus 31 ~~~~livl~G----~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGG----QPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEEC----CTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 4588999999 57999999998887766
No 125
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=73.02 E-value=1.6 Score=37.00 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=20.3
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
++.|.+||. .|.||||++--|+..|
T Consensus 4 ~~~i~l~G~----~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGP----MGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECC----TTSCHHHHHHHHHHHT
T ss_pred CCeEEEECC----CCCCHHHHHHHHHHHh
Confidence 678888884 6999999988777665
No 126
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=72.98 E-value=3.8 Score=34.06 Aligned_cols=54 Identities=13% Similarity=0.028 Sum_probs=36.3
Q ss_pred cCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 449 YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT--~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.++|++|++|+..-.. +...+.+++++++.++. +..+. ++=|+|-.+|-+.+++
T Consensus 122 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~ 177 (187)
T 2a9k_A 122 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETS--AKTRANVDKVFFDLMR 177 (187)
T ss_dssp TTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHHHHHH
T ss_pred CCCCEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeC--CCCCCCHHHHHHHHHH
Confidence 5899999999975422 22345677888888885 55444 3446777777666543
No 127
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=72.97 E-value=9.5 Score=32.25 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=34.9
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT-~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.++|++|++|+..-.. ....+.+++++++.|+. +..+. +.=|+|-.+|-+.++
T Consensus 125 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~ 178 (190)
T 3con_A 125 DDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIP-FIETS--AKTRQGVEDAFYTLV 178 (190)
T ss_dssp SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHH
T ss_pred CCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHH
Confidence 5899999999976432 12234556778888886 55544 344677777666554
No 128
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=72.91 E-value=6.5 Score=40.15 Aligned_cols=25 Identities=32% Similarity=0.195 Sum_probs=22.6
Q ss_pred HHHHhhhHHHHHHHHhccCCcEEEE
Q 010555 432 VEAGCVNLARHIANTKAYGANVVVA 456 (507)
Q Consensus 432 l~~G~~NL~~HIen~~~fGvpvVVA 456 (507)
-++.++|++++|+++.++|+++|+.
T Consensus 99 r~~~ie~~k~~i~~aa~lGi~~v~~ 123 (386)
T 3bdk_A 99 RDALIENYKTSIRNVGAAGIPVVCY 123 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 6788999999999999999998764
No 129
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=72.72 E-value=1.5 Score=45.08 Aligned_cols=38 Identities=29% Similarity=0.248 Sum_probs=29.7
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
..|++|.|-|+ -|.||||.+--|++.|. ..| ++..|||
T Consensus 47 ~~~~fIt~EG~----dGsGKTT~~~~Lae~L~-~~g---vv~trEP 84 (376)
T 1of1_A 47 PTLLRVYIDGP----HGMGKTTTTQLLVALGS-RDD---IVYVPEP 84 (376)
T ss_dssp CEEEEEEECSS----TTSSHHHHHHHHHC-----CC---EEEECCC
T ss_pred CCceEEEEECC----CCCCHHHHHHHHHHHhh-hCC---EEEEeCC
Confidence 46889999996 69999999999988884 445 8899999
No 130
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=72.71 E-value=4.2 Score=35.00 Aligned_cols=55 Identities=7% Similarity=-0.155 Sum_probs=36.0
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.++|+|++.|+-.-..+. ..+.+.+++++.|+. +..++.. +-|+|-.+|-+.+++
T Consensus 126 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~-~~g~gv~~lf~~l~~ 182 (187)
T 3c5c_A 126 RSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCL-FFEVSAC-LDFEHVQHVFHEAVR 182 (187)
T ss_dssp CCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECCSS-SCSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCc-EEEEeec-CccccHHHHHHHHHH
Confidence 489999999996543221 124567788888885 5555532 457787777666543
No 131
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=72.68 E-value=2.3 Score=36.14 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=21.8
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
..++|+++|. -|.||||++--|++.|
T Consensus 5 ~~~~I~l~G~----~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGG----PGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEES----TTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECC----CCCCHHHHHHHHHHHh
Confidence 3578999995 6999999998888776
No 132
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=72.61 E-value=6.9 Score=32.61 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=41.3
Q ss_pred hHHHHHHHHhc-cCCcEEEEecCCCCC-CHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTKA-YGANVVVAVNMFATD-SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~-fGvpvVVAiN~F~tD-T~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++...++.+++ .+.|+|+++|+...+ .+...+.+++++++.++. ++.+. ++=|+|-.+|-+.++
T Consensus 134 ~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~ 199 (208)
T 3clv_A 134 RAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLL-FIQTS--AKTGTNIKNIFYMLA 199 (208)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCE-EEEEC--TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCc-EEEEe--cCCCCCHHHHHHHHH
Confidence 44445555544 569999999997621 122356678888888885 55444 345677777766554
No 133
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=72.35 E-value=1.4 Score=42.09 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=31.8
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRe 111 (507)
.|+.|+++| |.|.||||+++-|++.+...+.-.++..-|+
T Consensus 33 ~g~~ilI~G----psGsGKStLA~~La~~g~~iIsdDs~~v~~~ 72 (205)
T 2qmh_A 33 YGLGVLITG----DSGVGKSETALELVQRGHRLIADDRVDVYQQ 72 (205)
T ss_dssp TTEEEEEEC----CCTTTTHHHHHHHHTTTCEEEESSEEEEEEC
T ss_pred CCEEEEEEC----CCCCCHHHHHHHHHHhCCeEEecchhheeec
Confidence 588999998 5699999999999888765566666666665
No 134
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=72.31 E-value=7.7 Score=31.85 Aligned_cols=66 Identities=12% Similarity=-0.007 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHhc----cCCcEEEEecCCCCC--CHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 436 CVNLARHIANTKA----YGANVVVAVNMFATD--SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 436 ~~NL~~HIen~~~----fGvpvVVAiN~F~tD--T~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
+.++...++.+.+ .++|+++++|+-.-. .+...+...+++++.++. +..+. ++=|+|-.+|-+.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l~ 162 (169)
T 3q85_A 91 FSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIETS--AALHHNTRELFEGAV 162 (169)
T ss_dssp HHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECB--TTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCc-EEEec--CccCCCHHHHHHHHH
Confidence 3344444444444 389999999997643 222334567788888885 54443 455677777666554
No 135
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=72.24 E-value=10 Score=31.39 Aligned_cols=55 Identities=11% Similarity=-0.030 Sum_probs=36.1
Q ss_pred hccCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 447 KAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 447 ~~fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
...++|+++++|+..-..+. ..+.+++++++.|+. +..+. ++=|+|-.+|-+.+.
T Consensus 113 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~ 169 (180)
T 2g6b_A 113 AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP-FMETS--AKTGLNVDLAFTAIA 169 (180)
T ss_dssp SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHH
T ss_pred CCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHH
Confidence 33789999999997654322 234456778888886 55554 345677777665554
No 136
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=71.87 E-value=1.9 Score=37.69 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=22.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+..++|+++|. -|.||||++--|++.|
T Consensus 13 ~~~~~I~l~G~----~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGG----PGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECS----TTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECC----CCCCHHHHHHHHHHHc
Confidence 45679999994 6999999988887766
No 137
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=71.30 E-value=2.2 Score=36.77 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=26.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
+.|+.++++| |-|.||||++..++..+...-|..
T Consensus 36 ~~g~~~~l~G----~~G~GKTtL~~~i~~~~~~~~g~~ 69 (180)
T 3ec2_A 36 EEGKGLTFVG----SPGVGKTHLAVATLKAIYEKKGIR 69 (180)
T ss_dssp GGCCEEEECC----SSSSSHHHHHHHHHHHHHHHSCCC
T ss_pred cCCCEEEEEC----CCCCCHHHHHHHHHHHHHHHcCCe
Confidence 3488899988 779999999999988883233443
No 138
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=71.23 E-value=2.7 Score=36.42 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=21.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|++|.++| |-|.||||+.--|+.-+
T Consensus 5 ~~g~ii~l~G----p~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISA----PSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEEC----CTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEEC----cCCCCHHHHHHHHHhhC
Confidence 3588999988 56999999987775443
No 139
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=71.19 E-value=15 Score=31.20 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=38.5
Q ss_pred HHHHHhcc--CCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 442 HIANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 442 HIen~~~f--GvpvVVAiN~F~tDT~aE--------------i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.++.++++ ++|+|+++|+..-..+.+ .+...+++++.|...+..+.. +=|+|-.+|-+.++
T Consensus 112 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa--~~g~gi~~l~~~l~ 188 (194)
T 2atx_A 112 WVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA--LTQKGLKTVFDEAI 188 (194)
T ss_dssp HHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT--TTCTTHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC--CCCCCHHHHHHHHH
Confidence 34445544 899999999976543221 345677888888732555443 44677777665554
No 140
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=71.11 E-value=1.4 Score=44.43 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=32.4
Q ss_pred CCCcEEEEeccCCCCCCCCcchhH-hhHHHHHhhhcCCcEEEEecCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTT-VGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTtt-IGL~qaL~~~lgk~a~~~lReP 112 (507)
++|++|.+-|+ -|.||||++ -=|.+.|. .-|. ++..|||
T Consensus 10 ~~~~~I~iEG~----~GaGKTT~~~~~L~~~l~-~~g~--vv~trEP 49 (341)
T 1osn_A 10 MGVLRIYLDGA----YGIGKTTAAEEFLHHFAI-TPNR--ILLIGEP 49 (341)
T ss_dssp EEEEEEEEEES----SSSCTTHHHHHHHHTTTT-SGGG--EEEECCC
T ss_pred CCceEEEEeCC----CCCCHHHHHHHHHHHHHh-hCCc--EEEEeCC
Confidence 56899999996 799999999 88888774 4452 8999999
No 141
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=71.09 E-value=3.9 Score=36.36 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=23.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.|.+|.++| |-|.||||++--|+..|.
T Consensus 20 ~~~~~i~i~G----~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 20 AGRLVLGIDG----LSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSSEEEEEEE----CTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 4688999998 579999999999988773
No 142
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=71.08 E-value=5.3 Score=32.56 Aligned_cols=66 Identities=8% Similarity=0.011 Sum_probs=41.3
Q ss_pred hhHHHHHHHHhc---cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 437 VNLARHIANTKA---YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 437 ~NL~~HIen~~~---fGvpvVVAiN~F~tDT~--aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.++.+.++.+.+ -++|+|++.|+-.-..+ .+.+.+++++++.++. +..+. ++=|+|-.+|-+.+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~i~~ 165 (170)
T 1r2q_A 95 ARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL-FMETS--AKTSMNVNEIFMAIAK 165 (170)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHH
Confidence 344444444443 48999999999754322 2235667788888885 44444 4457787777766654
No 143
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=70.93 E-value=2.8 Score=36.73 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=22.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
..+.+|+++|. -|.||||++--|++.|
T Consensus 18 ~~~~~I~l~G~----~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGP----PGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECC----TTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHh
Confidence 45789999995 6999999998888777
No 144
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=70.88 E-value=4.1 Score=39.82 Aligned_cols=43 Identities=28% Similarity=0.215 Sum_probs=34.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSl 114 (507)
.+|+.|.++| |-|+||||+..-|+..+ ...|.+..+.=..|..
T Consensus 54 ~~~~~i~i~G----~~g~GKSTl~~~l~~~~-~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 54 GNTLRLGVTG----TPGAGKSTFLEAFGMLL-IREGLKVAVIAVDPSS 96 (341)
T ss_dssp SCSEEEEEEE----CTTSCHHHHHHHHHHHH-HHTTCCEEEEEECCC-
T ss_pred CCCEEEEEEc----CCCCCHHHHHHHHHHHH-HhcCCeEEEEeecCCc
Confidence 5688888877 77999999999999999 4678887776666643
No 145
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=70.86 E-value=2.2 Score=37.29 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.4
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qa 96 (507)
+.++.|++||. -|.||||++--|++.
T Consensus 8 ~~~~~I~l~G~----~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGT----PGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECS----TTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECC----CCCCHHHHHHHHHHh
Confidence 46889999996 699999999888876
No 146
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=70.59 E-value=2.4 Score=37.25 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
..++|+++|. -|.||||++--|++.|
T Consensus 17 ~~~~I~l~G~----~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGV----SGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECS----TTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHh
Confidence 3678999985 5999999988887766
No 147
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=70.37 E-value=2.4 Score=36.47 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=19.8
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+|+++|+ -|.||||++--|++.|+
T Consensus 2 ~I~i~G~----~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGT----VGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECC----TTSCHHHHHHHHHHHHC
T ss_pred EEEEECC----CccCHHHHHHHHHHhcC
Confidence 5777775 69999999998888774
No 148
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=70.33 E-value=6.8 Score=31.70 Aligned_cols=53 Identities=15% Similarity=0.029 Sum_probs=35.1
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~--aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.++|+++++|+..-..+ ...+.+++++++.++. +..+. +.=|+|-.+|-+.++
T Consensus 108 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~ 162 (168)
T 1u8z_A 108 ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN-YVETS--AKTRANVDKVFFDLM 162 (168)
T ss_dssp TTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECC--TTTCTTHHHHHHHHH
T ss_pred CCCcEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeC--CCCCCCHHHHHHHHH
Confidence 58999999999754322 2245667788888885 55444 344677777666554
No 149
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=70.13 E-value=2.2 Score=36.73 Aligned_cols=25 Identities=44% Similarity=0.460 Sum_probs=20.4
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.|++|| +.|.||||++--|++.|+
T Consensus 3 ~~I~l~G----~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVG----LPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEEC----STTSSHHHHHHHHHHHHT
T ss_pred CeEEEEC----CCCCCHHHHHHHHHHHcC
Confidence 4688887 469999999988888774
No 150
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=70.00 E-value=14 Score=37.93 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=41.6
Q ss_pred ccccccccccCCCC-cceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhh---hHHHHHHHHhccCCc-E
Q 010555 379 EKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCV---NLARHIANTKAYGAN-V 453 (507)
Q Consensus 379 EKF~dIKCr~sgl~-PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~---NL~~HIen~~~fGvp-v 453 (507)
|+|. +-+..|+. .|++|+|.-+.- | ..+.||. ...+|+..++..|+| +
T Consensus 132 ~~f~--~~~~~~~~~aD~~ilVvDa~~-----g--------------------~~e~sf~~~~qt~e~l~~~~~~~vp~i 184 (467)
T 1r5b_A 132 KGYV--TNMINGASQADIGVLVISARR-----G--------------------EFEAGFERGGQTREHAVLARTQGINHL 184 (467)
T ss_dssp ------------TTSCSEEEEEEECST-----T--------------------HHHHTTSTTCCHHHHHHHHHHTTCSSE
T ss_pred HHHH--HHHHhhcccCCEEEEEEeCCc-----C--------------------ccccccCCCCcHHHHHHHHHHcCCCEE
Confidence 4553 34455544 899999986541 1 1122232 456788888899998 9
Q ss_pred EEEecCCCCCC----HHHH----HHHHHHHHHc-CC
Q 010555 454 VVAVNMFATDS----KAEL----NAVRNAAMAA-GA 480 (507)
Q Consensus 454 VVAiN~F~tDT----~aEi----~~v~~~~~~~-G~ 480 (507)
||++|+-.-.+ ++.+ +.+++++++. |.
T Consensus 185 ivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~ 220 (467)
T 1r5b_A 185 VVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 220 (467)
T ss_dssp EEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCC
Confidence 99999976532 3333 2456666666 54
No 151
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=69.97 E-value=1.5 Score=44.02 Aligned_cols=39 Identities=28% Similarity=0.230 Sum_probs=29.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
+.|++|.|-|+ -|.||||.+--|++.|. ..| ++..|||.
T Consensus 2 ~~~~fI~~EG~----dGsGKTT~~~~La~~L~-~~g---v~~trEPg 40 (331)
T 1e2k_A 2 PTLLRVYIDGP----HGMGKTTTTQLLVALGS-RDD---IVYVPEPM 40 (331)
T ss_dssp CEEEEEEECSC----TTSSHHHHHHHHTC-----CC---EEEECCCH
T ss_pred CccEEEEEECC----CCCCHHHHHHHHHHHhh-hCC---EEEEeCCC
Confidence 35788888886 69999999988888884 444 88999995
No 152
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=69.73 E-value=4.6 Score=39.60 Aligned_cols=42 Identities=29% Similarity=0.254 Sum_probs=31.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
++...|.+|| +-|.||||++.-|+.+| ...|++..+.==.|+
T Consensus 77 ~~~~~I~i~G----~~G~GKSTl~~~L~~~l-~~~g~kV~vi~~Dp~ 118 (355)
T 3p32_A 77 GNAHRVGITG----VPGVGKSTAIEALGMHL-IERGHRVAVLAVDPS 118 (355)
T ss_dssp CCSEEEEEEC----CTTSSHHHHHHHHHHHH-HTTTCCEEEEEEC--
T ss_pred CCceEEEEEC----CCCCCHHHHHHHHHHHH-HhCCCceEEEecCCC
Confidence 3455677777 37999999999999999 477988776655554
No 153
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=69.57 E-value=6.6 Score=33.59 Aligned_cols=64 Identities=9% Similarity=0.050 Sum_probs=39.4
Q ss_pred hHHHHHHHHhc---cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~---fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++.+.++.+++ .++|++|++|+..-..+.+ .+.+++++++.|+. +..+.. +=|+|-.+|-+.++
T Consensus 111 ~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa--~~~~gi~~l~~~l~ 179 (191)
T 2a5j_A 111 HLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI-FMETSA--KTACNVEEAFINTA 179 (191)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECT--TTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCE-EEEEeC--CCCCCHHHHHHHHH
Confidence 44444444443 4899999999976532212 34567788888885 554443 44677766655543
No 154
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=69.53 E-value=2.3 Score=36.59 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=20.0
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~q 95 (507)
+.|++|+++| |-|.||||+.--|+.
T Consensus 7 ~~g~~i~l~G----~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 7 LGGNILLLSG----HPGSGKSTIAEALAN 31 (191)
T ss_dssp CTTEEEEEEE----CTTSCHHHHHHHHHT
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHh
Confidence 4689999998 569999998766643
No 155
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=69.25 E-value=9.3 Score=32.53 Aligned_cols=53 Identities=15% Similarity=0.035 Sum_probs=35.4
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~--aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.++|+||++|+..-..+ ...+.+++++++.++. +..++ +.-|+|-.+|-+.++
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~ 172 (206)
T 2bov_A 118 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETS--AKTRANVDKVFFDLM 172 (206)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEEC--TTTCTTHHHHHHHHH
T ss_pred CCCCEEEEEeccCccccccccHHHHHHHHHHhCCe-EEEEe--CCCCCCHHHHHHHHH
Confidence 58999999999865432 2245677888888885 44444 344677777665554
No 156
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=68.85 E-value=2.5 Score=39.19 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=23.1
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 66 ~~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.+.+++|+++|. -|.||||++--|++.|
T Consensus 29 ~~~~~~i~l~G~----~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 29 SKQPIAILLGGQ----SGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CSSCEEEEEESC----GGGTTHHHHHHHHHHT
T ss_pred ccCCeEEEEECC----CCCCHHHHHHHHHHhc
Confidence 345789999994 6999999998887766
No 157
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=68.81 E-value=14 Score=30.04 Aligned_cols=54 Identities=9% Similarity=-0.042 Sum_probs=34.7
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHc-CCCeEEEccccccCchhhHHHHHhhhh
Q 010555 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAA-GAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~-G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.++|+++++|+..-..+.+ .+.+.+++++. +.. +..++ ++=|+|-.+|-+.+.+
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~ 163 (167)
T 1c1y_A 107 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCA-FLESS--AKSKINVNEIFYDLVR 163 (167)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCE-EEECB--TTTTBSHHHHHHHHHH
T ss_pred CCCcEEEEEECccccccccCCHHHHHHHHHHccCCc-EEEec--CCCCCCHHHHHHHHHH
Confidence 5899999999976433222 35566778776 554 54444 4557777777666543
No 158
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=68.61 E-value=2.7 Score=37.51 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.4
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|+.|+++|+ -|.||||.+--|++.|
T Consensus 2 ~~~~~I~l~G~----~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGP----PGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECC----TTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECC----CCCCHHHHHHHHHHHc
Confidence 35789999996 4999999998888877
No 159
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=68.50 E-value=17 Score=29.10 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=34.9
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT-~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.++|+++++|+-.-.. +...+.+.+++++.|+. +..+. +.-|+|-.+|-+.++
T Consensus 107 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 107 DDVPMVLVGNKSDLAARTVESRQAQDLARSYGIP-YIETS--AKTRQGVEDAFYTLV 160 (166)
T ss_dssp SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEEEC--TTTCTTHHHHHHHHH
T ss_pred CCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCe-EEEec--CCCCCCHHHHHHHHH
Confidence 4899999999976332 22234566778888886 44443 345677777766554
No 160
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=68.41 E-value=11 Score=31.39 Aligned_cols=55 Identities=13% Similarity=0.006 Sum_probs=34.5
Q ss_pred hccCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 447 KAYGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 447 ~~fGvpvVVAiN~F~tDT~--aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
...++|+|+++|+..-..+ ...+.+++++++.|+. +..+. ++=|+|-.+|-+.++
T Consensus 108 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l~ 164 (181)
T 3t5g_A 108 GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAA-FLESS--AKENQTAVDVFRRII 164 (181)
T ss_dssp ----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECC--TTSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCc-EEEEe--cCCCCCHHHHHHHHH
Confidence 3458999999999764222 2235567888888885 55444 455788777766554
No 161
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=67.89 E-value=30 Score=32.23 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=44.0
Q ss_pred ccCHHHHHHHhhhHHHHHHHHhccCCcEEEEe-----cCCCC---CCHHH-------HHHHHHHHHHcCCCeEEEcccc
Q 010555 426 NENVALVEAGCVNLARHIANTKAYGANVVVAV-----NMFAT---DSKAE-------LNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 426 ~enl~al~~G~~NL~~HIen~~~fGvpvVVAi-----N~F~t---DT~aE-------i~~v~~~~~~~G~~~~~~s~~w 489 (507)
.+|.+.-++.+..+++.|+..+.+|.+.||.. .+|+. ++++. +..+.+.|++.|+. +++-+++
T Consensus 96 ~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~ 173 (309)
T 2hk0_A 96 SEDAAVRAAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGIN-LCIEVLN 173 (309)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCE-EEEECCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeeccccccccCCCcCChHHHHHHHHHHHHHHHHHHHHcCCE-EEEeecc
Confidence 45556677888999999999999999999853 33422 22322 34455667778996 7777774
No 162
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=67.77 E-value=1.7 Score=44.10 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.+|+|+|+| |-|.||||+++-|++.|+
T Consensus 38 ~~~~lIvI~G----PTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMG----ATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEEC----STTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEEC----CCCCCHHHHHHHHHHHCC
Confidence 4578999998 459999999999998874
No 163
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=67.73 E-value=4.1 Score=36.32 Aligned_cols=28 Identities=36% Similarity=0.439 Sum_probs=23.4
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.|.+|.+.| |-|.||||++--|+.-+.
T Consensus 20 ~~g~~v~I~G----~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSG----APGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEEC----CTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 5688999988 679999999988877773
No 164
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=67.55 E-value=5.5 Score=35.21 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=25.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a 105 (507)
+.|.+++++| |.|.||||++.-++..+ ...|.++
T Consensus 21 ~~G~~~~i~G----~~GsGKTtl~~~~~~~~-~~~~~~v 54 (247)
T 2dr3_A 21 PERNVVLLSG----GPGTGKTIFSQQFLWNG-LKMGEPG 54 (247)
T ss_dssp ETTCEEEEEE----CTTSSHHHHHHHHHHHH-HHTTCCE
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHH-HhcCCeE
Confidence 5699999998 56999999998887766 3434443
No 165
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=67.51 E-value=2.8 Score=37.50 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=23.4
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.+++|+++|. -|.||||.+--|++.|+
T Consensus 3 ~~~~~I~l~G~----~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 3 ADPLKVMISGA----PASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCSCCEEEEES----TTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 35678999995 69999999999988883
No 166
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=67.29 E-value=6.9 Score=32.23 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=36.1
Q ss_pred hccCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 447 KAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 447 ~~fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
...++|++|++|+..-..+.+ .+..++++++.++. ++.++ ++=|+|-.+|-+.+.+
T Consensus 116 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~ 173 (179)
T 2y8e_A 116 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETS--AKAGYNVKQLFRRVAA 173 (179)
T ss_dssp HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEEEB--TTTTBSHHHHHHHHHH
T ss_pred cCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHH
Confidence 346899999999975432222 34566778888885 44443 4456777777666543
No 167
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=67.26 E-value=15 Score=34.53 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=45.7
Q ss_pred HHHHHHHhccCCcEE-EEec---CCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchh
Q 010555 440 ARHIANTKAYGANVV-VAVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 440 ~~HIen~~~fGvpvV-VAiN---~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeG 495 (507)
++.++.+++.|+++| +.++ .|..+.-+.++.+.++|.+.|.. +++.-|...|+.+
T Consensus 34 ~~~~~~i~~~G~N~VRi~~~~~~~~~~~~~~~ld~~v~~a~~~Gi~-Vild~H~~~~~~~ 92 (294)
T 2whl_A 34 STAIPAIAEQGANTIRIVLSDGGQWEKDDIDTIREVIELAEQNKMV-AVVEVHDATGRDS 92 (294)
T ss_dssp HHHHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHTTTCE-EEEEECTTTTCCC
T ss_pred HHHHHHHHHcCCCEEEEEecCCCccCccHHHHHHHHHHHHHHCCCE-EEEEeccCCCCCc
Confidence 467888999999999 7776 68888899999999999999996 7887777666543
No 168
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=67.25 E-value=5.4 Score=34.63 Aligned_cols=27 Identities=19% Similarity=0.476 Sum_probs=23.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|.+++++| |-|.||||+..-|+..+
T Consensus 21 ~~G~~~~i~G----~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTG----EPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEEC----STTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEc----CCCCCHHHHHHHHHHHH
Confidence 5689999987 56999999999998766
No 169
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=66.89 E-value=10 Score=32.65 Aligned_cols=59 Identities=15% Similarity=0.004 Sum_probs=38.3
Q ss_pred HHHHhccCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 443 IANTKAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 443 Ien~~~fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
+......++|++|++|+-.-..+. ..+.+++++++.|+. +..+. +.-|+|-.+|-+.++
T Consensus 106 i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~ 166 (206)
T 2bcg_Y 106 IDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP-FLETS--ALDSTNVEDAFLTMA 166 (206)
T ss_dssp HHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEECC--TTTCTTHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHH
Confidence 333334579999999997654322 235567788888986 55444 455777777766554
No 170
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=66.87 E-value=9.8 Score=32.68 Aligned_cols=64 Identities=9% Similarity=0.031 Sum_probs=37.8
Q ss_pred hHHHHHHHHhc---cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTKA---YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~---fGvpvVVAiN~F~tDT-~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++.+.++.+++ .++|++|++|+..-+. ....+.+.+++++.|+. +..+.. .=|+|-.+|-+.+.
T Consensus 110 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~gi~~l~~~l~ 177 (213)
T 3cph_A 110 NIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSA--KNDDNVNEIFFTLA 177 (213)
T ss_dssp THHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCC-EEECBT--TTTBSSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCE-EEEEeC--CCCCCHHHHHHHHH
Confidence 33444444443 4899999999976421 11234456777888886 555543 44667666655443
No 171
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=66.82 E-value=7.4 Score=33.88 Aligned_cols=66 Identities=20% Similarity=0.150 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHhc----cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 436 CVNLARHIANTKA----YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 436 ~~NL~~HIen~~~----fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
+.++...++.+.. .++|+||++|+..-..+.+ .+.+.+++++.++. +..+. ++=|+|-.+|-+.++
T Consensus 123 ~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~ 194 (217)
T 2f7s_A 123 FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIP-YFETS--AATGQNVEKAVETLL 194 (217)
T ss_dssp HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEEEB--TTTTBTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc-EEEEE--CCCCCCHHHHHHHHH
Confidence 3455556666655 5799999999976433222 35677888888986 44444 344677666655544
No 172
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=66.59 E-value=48 Score=30.34 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=45.2
Q ss_pred cccCHHHHHHHhhhHHHHHHHHhccCCcEEEEec---CCCC---CCHHH-------HHHHHHHHHHcCCCeEEEccc
Q 010555 425 LNENVALVEAGCVNLARHIANTKAYGANVVVAVN---MFAT---DSKAE-------LNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 425 ~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN---~F~t---DT~aE-------i~~v~~~~~~~G~~~~~~s~~ 488 (507)
..++.+..++.+..+++.|+..+.+|.+.||..- .|.. ++++. ++.+.+.|++.|+. +.+-+|
T Consensus 92 ~~~d~~~r~~~~~~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~ 167 (287)
T 3kws_A 92 LSTDPAIRKECMDTMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTS-VIFEPL 167 (287)
T ss_dssp TBSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCC-EEECCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEec
Confidence 3566777888899999999999999999988742 2321 44443 44555667788997 677644
No 173
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=66.35 E-value=12 Score=37.18 Aligned_cols=64 Identities=13% Similarity=-0.007 Sum_probs=42.2
Q ss_pred hHHHHHHHHhccCC-cEEEEecCCCCCCHHHHHHHHH----HHHHc---CCCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTKAYGA-NVVVAVNMFATDSKAELNAVRN----AAMAA---GAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~fGv-pvVVAiN~F~tDT~aEi~~v~~----~~~~~---G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
....|+..++.+|+ |+||++|+-.-.++++++...+ ++++. +++ ++.++.+ =|+|-.+|-+.+.
T Consensus 116 qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-ii~vSA~--~g~gi~~L~~~l~ 187 (403)
T 3sjy_A 116 QTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVP-IIPVSAL--HKINIDSLIEGIE 187 (403)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC-EEECBTT--TTBSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCE-EEEEECC--CCcChHHHHHHHH
Confidence 56778888888887 8999999987766666544333 33222 444 5555544 4677777776654
No 174
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=66.18 E-value=2 Score=43.22 Aligned_cols=40 Identities=23% Similarity=0.221 Sum_probs=32.3
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
+.|++|.|-|+ -|.||||.+--|++.|. . +. -++..|||.
T Consensus 5 ~~~~fI~~EG~----dGaGKTT~~~~La~~L~-~-~~-~v~~trEPg 44 (334)
T 1p6x_A 5 VTIVRIYLDGV----YGIGKSTTGRVMASAAS-G-GS-PTLYFPEPM 44 (334)
T ss_dssp EEEEEEEEECS----TTSSHHHHHHHHHSGGG-C-SS-CEEEECCCH
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHhc-c-CC-cEEEEeCCC
Confidence 45889999996 69999999999998884 3 22 288899993
No 175
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=66.16 E-value=6.4 Score=33.82 Aligned_cols=65 Identities=17% Similarity=0.118 Sum_probs=40.9
Q ss_pred hHHHHHHHHhc---cCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 438 NLARHIANTKA---YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 438 NL~~HIen~~~---fGvpvVVAiN~F~tDT--~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
++.+.++.+++ .++|+++++|+..-.. +...+.+++++++.|+. +..+. ++=|+|-.+|-+.+.+
T Consensus 113 ~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~ 182 (192)
T 2fg5_A 113 TLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAI-VVETS--AKNAINIEELFQGISR 182 (192)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCE-EEECB--TTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCcCHHHHHHHHHH
Confidence 34444444444 4899999999975432 11245577888888885 55444 4457777777766653
No 176
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=66.03 E-value=15 Score=29.56 Aligned_cols=55 Identities=16% Similarity=0.007 Sum_probs=36.4
Q ss_pred ccCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 448 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 448 ~fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
..++|+++++|+..-..+.+ .+..++++++.|.. +..++ ++-|+|-.+|-+.+++
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~ 162 (167)
T 1kao_A 106 YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCP-FMETS--AKSKTMVDELFAEIVR 162 (167)
T ss_dssp TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC-EEEEC--TTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCC-EEEec--CCCCcCHHHHHHHHHH
Confidence 36899999999975322222 34456778888886 55444 4557888877766653
No 177
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=66.01 E-value=2.2 Score=39.49 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=27.3
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
.++++|++.|+ -|.||||.+--|++.|. + +..++||
T Consensus 22 ~~~~~I~ieG~----~GsGKST~~~~L~~~l~---~---~~~i~ep 57 (263)
T 1p5z_B 22 TRIKKISIEGN----IAAGKSTFVNILKQLCE---D---WEVVPEP 57 (263)
T ss_dssp -CCEEEEEECS----TTSSHHHHHTTTGGGCT---T---EEEECCC
T ss_pred cCceEEEEECC----CCCCHHHHHHHHHHhcC---C---CEEEecc
Confidence 46899999997 59999999988877662 2 4556665
No 178
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=65.63 E-value=21 Score=38.19 Aligned_cols=89 Identities=15% Similarity=0.219 Sum_probs=52.2
Q ss_pred ccccccccccccCCCC-cceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCc-EE
Q 010555 377 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VV 454 (507)
Q Consensus 377 GaEKF~dIKCr~sgl~-PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvp-vV 454 (507)
|-|+|. +-...++. .|++|+|.-+..=-+..+... ......|+..++..|+| +|
T Consensus 254 G~e~f~--~~~~~~~~~aD~~llVVDa~~g~~e~~~~~----------------------~~qt~e~l~~~~~lgi~~iI 309 (611)
T 3izq_1 254 GHRDFV--PNAIMGISQADMAILCVDCSTNAFESGFDL----------------------DGQTKEHMLLASSLGIHNLI 309 (611)
T ss_dssp SSSCHH--HHHTTTSSCCSEEEEEEECSHHHHHTTCCT----------------------TSHHHHHHHHHHTTTCCEEE
T ss_pred CCcccH--HHHHHHHhhcCceEEEEECCCCcccccchh----------------------hhHHHHHHHHHHHcCCCeEE
Confidence 346664 34444544 899999987653222222211 12567899999999987 99
Q ss_pred EEecCCCCCC--HHHH----HHHHHHHHHcCCC----eEEEcccc
Q 010555 455 VAVNMFATDS--KAEL----NAVRNAAMAAGAF----DAVVCSHH 489 (507)
Q Consensus 455 VAiN~F~tDT--~aEi----~~v~~~~~~~G~~----~~~~s~~w 489 (507)
|++|+...-. ++.+ +.+.+++.+.|.. .++.++.+
T Consensus 310 VVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~ 354 (611)
T 3izq_1 310 IAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGF 354 (611)
T ss_dssp EEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTT
T ss_pred EEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecc
Confidence 9999976543 3333 3444555555541 24555444
No 179
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=65.50 E-value=8.4 Score=31.36 Aligned_cols=64 Identities=6% Similarity=-0.141 Sum_probs=38.6
Q ss_pred hHHHHHHHHhc--cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTKA--YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~--fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++...++.++. .++|+++++|+..-..+. ..+.+++++++.|+. +..++. +=|+|-.+|-+.+.
T Consensus 95 ~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~~i~~l~~~l~ 162 (168)
T 1z2a_A 95 AISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTSV--KEDLNVSEVFKYLA 162 (168)
T ss_dssp THHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECBT--TTTBSSHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEec--CCCCCHHHHHHHHH
Confidence 33344444433 489999999997543211 234566788888885 554443 44677766665554
No 180
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=65.48 E-value=2.6 Score=37.82 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=22.4
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.++..|+++|+ -|.||||.+--|++.|
T Consensus 3 ~~~~~I~l~G~----~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 3 SKKHNLILIGA----PGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GGCCEEEEEEC----TTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECC----CCCCHHHHHHHHHHHh
Confidence 45778999985 4999999998888777
No 181
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=65.43 E-value=14 Score=35.54 Aligned_cols=62 Identities=18% Similarity=0.076 Sum_probs=43.1
Q ss_pred hHHHHHHHHhccCCcEEEEecCCCCCCHHH---HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHh
Q 010555 438 NLARHIANTKAYGANVVVAVNMFATDSKAE---LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVR 502 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN~F~tDT~aE---i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~ 502 (507)
++.+-+..++..++|+|+++|+-.-.++++ ++.+.+++++.|.. +...+ ++=|+|-.+|-+.
T Consensus 98 ~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~-~~~~S--A~~g~gi~~L~~~ 162 (302)
T 2yv5_A 98 LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYD-VLKVS--AKTGEGIDELVDY 162 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCe-EEEEE--CCCCCCHHHHHhh
Confidence 455566666678999999999977655553 66677788888885 44333 4667777777554
No 182
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=65.42 E-value=2.9 Score=39.11 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=20.1
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++|+++| |.|.||||++.-|++.++
T Consensus 2 ~li~I~G----~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYG----PTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEEC----CTTSSHHHHHHHHHHHHC
T ss_pred eEEEEEC----CCCcCHHHHHHHHHhcCC
Confidence 4678887 469999999998887773
No 183
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=65.39 E-value=5.3 Score=35.38 Aligned_cols=64 Identities=11% Similarity=-0.011 Sum_probs=36.4
Q ss_pred hHHHHHHHHhc---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~---fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++.+.++.++. .++|+||++|+..-..+. ..+.+.+++++.++. +..+. ++=|+|-.+|-+.++
T Consensus 103 ~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~ 171 (223)
T 3cpj_B 103 NCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLL-FTETS--ALNSENVDKAFEELI 171 (223)
T ss_dssp HHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCE-EEECC--CC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHH
Confidence 33344444443 489999999997543221 124566788888885 55444 344666666655543
No 184
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=65.37 E-value=39 Score=30.39 Aligned_cols=79 Identities=13% Similarity=0.016 Sum_probs=52.6
Q ss_pred ccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEe-cCCCCCC----HHH-------HHHHHHHHHHcCCCeEEEcccccc
Q 010555 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFATDS----KAE-------LNAVRNAAMAAGAFDAVVCSHHAH 491 (507)
Q Consensus 424 ~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAi-N~F~tDT----~aE-------i~~v~~~~~~~G~~~~~~s~~wa~ 491 (507)
+..+|.+..++.+..+++.|+..+.+|.+.||.- .....+. ++. +..+.+.|++.|+. +++-++...
T Consensus 63 l~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~~~ 141 (254)
T 3ayv_A 63 LLSPDPEVRGLTLRRLLFGLDRAAELGADRAVFHSGIPHGRTPEEALERALPLAEALGLVVRRARTLGVR-LLLENSHEP 141 (254)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHTHHHHHHHTHHHHHHHHHHTCE-EEEECSSCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcCCE-EEEcCCCCC
Confidence 4456778888999999999999999999998764 3333332 221 33455666778996 777777643
Q ss_pred CchhhHHHHHhh
Q 010555 492 GGKGAFKEPVRM 503 (507)
Q Consensus 492 GGeGa~~LA~~v 503 (507)
-.+-..+|.+.+
T Consensus 142 ~~~~~~~l~~~v 153 (254)
T 3ayv_A 142 HPEALRPVLEAH 153 (254)
T ss_dssp SGGGTHHHHHHH
T ss_pred CHHHHHHHHHhc
Confidence 333444555443
No 185
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=65.12 E-value=3.3 Score=38.93 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=28.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.+|.+++.|+ -|-||||.++||+.-. ...|+++.+.
T Consensus 27 ~~g~i~v~tG-----~GkGKTTaA~GlalRA-~g~G~rV~~v 62 (196)
T 1g5t_A 27 ERGIIIVFTG-----NGKGKTTAAFGTAARA-VGHGKNVGVV 62 (196)
T ss_dssp CCCCEEEEES-----SSSCHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred cCceEEEECC-----CCCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 5688888764 6999999999999877 3679987654
No 186
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=64.88 E-value=1.3 Score=42.59 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=26.6
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSl 114 (507)
..-||++| |.|.|||+++..+.+.. .+.+. .++.+.-+++
T Consensus 25 ~~~vLi~G----e~GtGKt~lAr~i~~~~-~~~~~-~~v~v~~~~~ 64 (304)
T 1ojl_A 25 DATVLIHG----DSGTGKELVARALHACS-ARSDR-PLVTLNCAAL 64 (304)
T ss_dssp TSCEEEES----CTTSCHHHHHHHHHHHS-SCSSS-CCCEEECSSC
T ss_pred CCcEEEEC----CCCchHHHHHHHHHHhC-cccCC-CeEEEeCCCC
Confidence 44578887 66999999998888876 34333 3455544444
No 187
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=64.58 E-value=3.1 Score=34.23 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=16.1
Q ss_pred cEEEEeccCCCCCCCCcchhHhhH
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGL 93 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL 93 (507)
++|+++|. .|.||||++--|
T Consensus 2 ~~I~l~G~----~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGM----PGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECC----TTSCHHHHHHHH
T ss_pred cEEEEECC----CCCCHHHHHHHH
Confidence 37888885 699999987766
No 188
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=64.57 E-value=18 Score=34.56 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=41.1
Q ss_pred hHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcC--CCeEEEccccccCchhhHHHHH
Q 010555 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAG--AFDAVVCSHHAHGGKGAFKEPV 501 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G--~~~~~~s~~wa~GGeGa~~LA~ 501 (507)
++.+.+..++..++|+|+++|+-.-..+.+++.+.++++..+ .. +..++ ++=|+|-.+|-+
T Consensus 103 ~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~-~~~~S--Aktg~gv~~lf~ 165 (301)
T 1u0l_A 103 IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYP-IVKTS--AKTGMGIEELKE 165 (301)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSC-EEECC--TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCc-EEEEE--CCCCcCHHHHHH
Confidence 455556566668999999999987666666666777777666 54 44444 455677665543
No 189
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=64.53 E-value=11 Score=37.94 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=38.4
Q ss_pred hhHHHHHHHHhccCCc-EEEEecCCCCCC----HHH----HHHHHHHHHHcCC----CeEEEccccccCchhh
Q 010555 437 VNLARHIANTKAYGAN-VVVAVNMFATDS----KAE----LNAVRNAAMAAGA----FDAVVCSHHAHGGKGA 496 (507)
Q Consensus 437 ~NL~~HIen~~~fGvp-vVVAiN~F~tDT----~aE----i~~v~~~~~~~G~----~~~~~s~~wa~GGeGa 496 (507)
....+|+..++.+|+| +||++|+..-.. ++. .+.+++++++.|. ..++.+..+. |+|-
T Consensus 130 ~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~--g~~v 200 (435)
T 1jny_A 130 GQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPS--GDNI 200 (435)
T ss_dssp CHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTT--TBTT
T ss_pred hHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeeccc--Cccc
Confidence 3678899999999985 899999976433 333 3456777777773 2255555543 4553
No 190
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=64.40 E-value=16 Score=31.66 Aligned_cols=55 Identities=5% Similarity=0.019 Sum_probs=36.3
Q ss_pred hHHHHHHHHhccCCcEEEEecCCC--CCCHHHHHHHHHHHHHc-CC-CeEEEccccccC
Q 010555 438 NLARHIANTKAYGANVVVAVNMFA--TDSKAELNAVRNAAMAA-GA-FDAVVCSHHAHG 492 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN~F~--tDT~aEi~~v~~~~~~~-G~-~~~~~s~~wa~G 492 (507)
...+-|+.+++.|+++.|.....+ .|+.+|++.+.+++++. |+ ..+.+.....-|
T Consensus 80 ~i~~~i~~l~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g 138 (182)
T 3can_A 80 LILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIG 138 (182)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC--
T ss_pred HHHHHHHHHHhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccC
Confidence 344445555667888877665444 48899999999999998 87 545444333333
No 191
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=64.23 E-value=10 Score=38.53 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=36.3
Q ss_pred hHHHHHHHHhccCCc-EEEEecCCCCCC----HHHH----HHHHHHHHHcCCC-----eEEEccccccCchhhHH
Q 010555 438 NLARHIANTKAYGAN-VVVAVNMFATDS----KAEL----NAVRNAAMAAGAF-----DAVVCSHHAHGGKGAFK 498 (507)
Q Consensus 438 NL~~HIen~~~fGvp-vVVAiN~F~tDT----~aEi----~~v~~~~~~~G~~-----~~~~s~~wa~GGeGa~~ 498 (507)
....|+..++..|+| +||++|+-.-.+ ++.. +.+.+++++.|.. .++.++.| =|+|-.+
T Consensus 142 qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~--~G~ni~~ 214 (439)
T 3j2k_7 142 QTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGL--TGANLKE 214 (439)
T ss_pred hHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeecc--CCccccc
Confidence 567888999999999 999999976422 2222 3344555566642 24444443 3555544
No 192
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=63.86 E-value=20 Score=42.33 Aligned_cols=98 Identities=18% Similarity=0.154 Sum_probs=58.8
Q ss_pred ccccccccccccCCCC-cceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCc-EE
Q 010555 377 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VV 454 (507)
Q Consensus 377 GaEKF~dIKCr~sgl~-PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvp-vV 454 (507)
|-|+|. +-+..++. .|++|+|.-+.- |. +.....|+..++..|+| +|
T Consensus 368 GHedF~--~~mi~gas~AD~aILVVDAtd-----Gv------------------------~~QTrEhL~ll~~lgIP~II 416 (1289)
T 3avx_A 368 GHADYV--KNMITGAAQMDGAILVVAATD-----GP------------------------MPQTREHILLGRQVGVPYII 416 (1289)
T ss_dssp CHHHHH--HHHHHTSCCCSEEEEEEETTT-----CS------------------------CTTHHHHHHHHHHHTCSCEE
T ss_pred ChHHHH--HHHHHHHhhCCEEEEEEcCCc-----cC------------------------cHHHHHHHHHHHHcCCCeEE
Confidence 455664 34444554 899999987541 11 01345677777788999 79
Q ss_pred EEecCCCCCCHHH-H----HHHHHHHHHcCC----CeEEEcccccc--C----chhhHHHHHhhhh
Q 010555 455 VAVNMFATDSKAE-L----NAVRNAAMAAGA----FDAVVCSHHAH--G----GKGAFKEPVRMLH 505 (507)
Q Consensus 455 VAiN~F~tDT~aE-i----~~v~~~~~~~G~----~~~~~s~~wa~--G----GeGa~~LA~~v~~ 505 (507)
|++|+-.-..++| + +.+++++++.|. ..++.+..+.. | ++|-.+|-+.+.+
T Consensus 417 VVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 417 VFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp EEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 9999987543333 2 345667777773 12566665542 1 1566677666543
No 193
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=63.48 E-value=15 Score=29.97 Aligned_cols=55 Identities=16% Similarity=0.015 Sum_probs=35.5
Q ss_pred ccCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 448 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 448 ~fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.-++|++++.|+..-..+.+ .+...+++++.+.. +..++ ++=|+|-.+|-+.+.+
T Consensus 109 ~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~i~~ 165 (170)
T 1z0j_A 109 PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI-FVETS--AKNAININELFIEISR 165 (170)
T ss_dssp CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECB--TTTTBSHHHHHHHHHH
T ss_pred CCCCcEEEEEECCccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCcCHHHHHHHHHH
Confidence 45789999999976533222 34567788888875 55444 3446777777666543
No 194
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=63.39 E-value=7.8 Score=32.44 Aligned_cols=60 Identities=10% Similarity=-0.005 Sum_probs=38.1
Q ss_pred HHHHHhccCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 442 HIANTKAYGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 442 HIen~~~fGvpvVVAiN~F~tDT~--aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.+......++|++|++|+..-..+ .+.+..++++++.++. +..+.. +=|+|-.+|-+.++
T Consensus 107 ~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~gi~~l~~~l~ 168 (186)
T 2bme_A 107 DARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM-FLETSA--LTGENVEEAFVQCA 168 (186)
T ss_dssp HHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCT--TTCTTHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEecC--CCCCCHHHHHHHHH
Confidence 344445578999999999764322 2234566788888885 555543 44677766655543
No 195
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=63.33 E-value=23 Score=30.61 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=38.5
Q ss_pred HHHHHhcc--CCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 442 HIANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 442 HIen~~~f--GvpvVVAiN~F~tDT~aE--------------i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.++.++++ ++|++|++|+..-..+.+ .+...+++++.+...+..+. ++=|+|-.+|-+.+.+
T Consensus 119 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--A~~g~gi~~l~~~i~~ 196 (201)
T 2gco_A 119 WTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS--AKTKEGVREVFEMATR 196 (201)
T ss_dssp HHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC--TTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee--CCCCCCHHHHHHHHHH
Confidence 34444444 899999999975433321 13456778888874355554 3446787777666543
No 196
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=62.92 E-value=5.1 Score=40.10 Aligned_cols=35 Identities=29% Similarity=0.268 Sum_probs=28.7
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+.|++|+++| |.|.||||++.-|+..+. ..|.+++
T Consensus 61 ~~G~ii~I~G----~pGsGKTtLal~la~~~~-~~g~~vl 95 (356)
T 1u94_A 61 PMGRIVEIYG----PESSGKTTLTLQVIAAAQ-REGKTCA 95 (356)
T ss_dssp ETTSEEEEEC----STTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred cCCeEEEEEC----CCCCCHHHHHHHHHHHHH-HCCCeEE
Confidence 5799999998 789999999999988873 5565544
No 197
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=62.91 E-value=15 Score=35.95 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=23.6
Q ss_pred HHHHhhhHHHHHHHHhccCCcEEEEecCCC
Q 010555 432 VEAGCVNLARHIANTKAYGANVVVAVNMFA 461 (507)
Q Consensus 432 l~~G~~NL~~HIen~~~fGvpvVVAiN~F~ 461 (507)
.++.++++++.+++++++|+++|+. |-++
T Consensus 90 r~~~i~~~~~~i~~a~~lG~~~v~~-n~~p 118 (367)
T 1tz9_A 90 RDHYIDNYRQTLRNLGKCGISLVCY-SFKP 118 (367)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEE-CCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE-eCCC
Confidence 3567889999999999999998765 5443
No 198
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=62.86 E-value=16 Score=30.60 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=40.5
Q ss_pred hhHHHHHHHHhc----cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 437 VNLARHIANTKA----YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 437 ~NL~~HIen~~~----fGvpvVVAiN~F~tDT-~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.++...++.+.+ .++|+++++|+..-.. +...+.+.+++++.++. +..+.. +=|+|-.+|-+.++
T Consensus 104 ~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~gi~~l~~~l~ 173 (195)
T 1x3s_A 104 VKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSML-FIEASA--KTCDGVQCAFEELV 173 (195)
T ss_dssp HTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCE-EEECCT--TTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCE-EEEecC--CCCCCHHHHHHHHH
Confidence 355555666655 4799999999976532 11234567788888885 555544 34677665554443
No 199
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=62.82 E-value=14 Score=38.04 Aligned_cols=63 Identities=10% Similarity=0.167 Sum_probs=41.8
Q ss_pred HHHHHHHHhccCCcEEEEecCCCCCCHHHHHH----HHHHHHHc----CCCeEEEccccccCchhhHHHHHhhh
Q 010555 439 LARHIANTKAYGANVVVAVNMFATDSKAELNA----VRNAAMAA----GAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 439 L~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~----v~~~~~~~----G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
-..|+..++.+|+|+||++|+-.--.+++++. +++++++. +.. ++.++.+. |+|-.+|-+.+.
T Consensus 114 t~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~-ii~vSA~~--g~gI~~L~~~L~ 184 (482)
T 1wb1_A 114 TGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS-IIPISAKT--GFGVDELKNLII 184 (482)
T ss_dssp HHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC-EEECCTTT--CTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccce-EEEEECcC--CCCHHHHHHHHH
Confidence 34566777889999999999987665655544 44555544 444 55555553 677777766554
No 200
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=62.81 E-value=13 Score=31.62 Aligned_cols=54 Identities=15% Similarity=0.010 Sum_probs=36.2
Q ss_pred cCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 449 YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT--~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
-++|+|+++|+-.-.. ....+..++++++.|+. +..+. ++=|+|-.+|-+.+++
T Consensus 127 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~ 182 (191)
T 3dz8_A 127 DNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFD-FFEAS--AKENISVRQAFERLVD 182 (191)
T ss_dssp TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECB--TTTTBSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHH
Confidence 5899999999976422 22234567778888885 55444 4567888777666543
No 201
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=62.77 E-value=32 Score=32.55 Aligned_cols=87 Identities=13% Similarity=0.046 Sum_probs=56.4
Q ss_pred ccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEe-----cC
Q 010555 385 KCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAV-----NM 459 (507)
Q Consensus 385 KCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAi-----N~ 459 (507)
.++..||+|-+++.+. |-. +. -.+..++.+.-++.+..++++|+.++.+|.++|+.. .+
T Consensus 73 ~l~~~gL~~~~i~~~~-------~~~-~~--------~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~ 136 (335)
T 2qw5_A 73 YLDSEGLENVKISTNV-------GAT-RT--------FDPSSNYPEQRQEALEYLKSRVDITAALGGEIMMGPIVIPYGV 136 (335)
T ss_dssp HHHHTTCTTCEEEEEC-------CCC-SS--------SCTTCSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCTTC
T ss_pred HHHHCCCCcceeEEEe-------ccC-CC--------CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEeccccCcccc
Confidence 4788899876554431 110 10 123345667778899999999999999999999642 45
Q ss_pred CCCC--------------CHHH-------HHHHHHHHHHcCCCeEEEccc
Q 010555 460 FATD--------------SKAE-------LNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 460 F~tD--------------T~aE-------i~~v~~~~~~~G~~~~~~s~~ 488 (507)
|+.. +++. +..+.+.|++.|+. .++-++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~ 185 (335)
T 2qw5_A 137 FPTTDFNEPIWSDELQEHLKVRYANAQPILDKLGEYAEIKKVK-LAIEPI 185 (335)
T ss_dssp CCBCTTCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEECCC
T ss_pred ccCCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeC
Confidence 5432 2333 34556667788996 777665
No 202
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=62.53 E-value=5.2 Score=39.73 Aligned_cols=105 Identities=10% Similarity=0.088 Sum_probs=74.9
Q ss_pred CeEEeecccccccccccccccccccCCCCcceE---EEEeeehHHHhcCCCCCccCCCCCchhccc------cCHHH-HH
Q 010555 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCA---VIVATIRALKMHGGGPQVVAGKPLDHAYLN------ENVAL-VE 433 (507)
Q Consensus 364 dyVVTEAGFGaDlGaEKF~dIKCr~sgl~Pdav---VlVaTvRALK~HGG~~~~~~g~pL~~~~~~------enl~a-l~ 433 (507)
||+||-.-|..|. .++|++ +||..|+.--.+ --+++.+.+++.- ..+|-.+|+++.+ .|.++ .+
T Consensus 178 df~iTQ~ffD~~~-~~~f~~-~~r~~Gi~vPIi~GImPi~s~~~~~~~~----~~~Gv~iP~~l~~~l~~~~dd~~~~~~ 251 (304)
T 3fst_A 178 NRAITQFFFDVES-YLRFRD-RCVSAGIDVEIIPGILPVSNFKQAKKLA----DMTNVRIPAWMAQMFDGLDDDAETRKL 251 (304)
T ss_dssp CEEEECCCSCHHH-HHHHHH-HHHHTTCCSCEECEECCCSCHHHHHHHH----HHHTCCCCHHHHHHHTTCTTCHHHHHH
T ss_pred CEEEeCccCCHHH-HHHHHH-HHHhcCCCCcEEEEecccCCHHHHHHHH----HcCCCcCCHHHHHHHHhcCCCHHHHHH
Confidence 9999999998875 677777 899999852221 2256666776552 2234456665433 35666 67
Q ss_pred HHhhhHHHHHHHHhccCCcEE--EEecCCCCCCHHHHHHHHHHHHHcCCCe
Q 010555 434 AGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGAFD 482 (507)
Q Consensus 434 ~G~~NL~~HIen~~~fGvpvV--VAiN~F~tDT~aEi~~v~~~~~~~G~~~ 482 (507)
.|++--...++.+...|+|-| ..+|+. +.+.+.|+..|...
T Consensus 252 ~Gi~~a~e~~~~L~~~gv~GiH~yt~n~~--------~~~~~I~~~lg~~~ 294 (304)
T 3fst_A 252 VGANIAMDMVKILSREGVKDFHFYTLNRA--------EMSYAICHTLGVRP 294 (304)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECTTCC--------HHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCH--------HHHHHHHHHhCCCc
Confidence 899999999999999898875 346665 57888888888863
No 203
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=62.52 E-value=11 Score=32.05 Aligned_cols=64 Identities=14% Similarity=0.003 Sum_probs=40.3
Q ss_pred hHHHHHHHHhc---cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTKA---YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~---fGvpvVVAiN~F~tDT~--aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++.+.++.+.. .++|++|++|+..-..+ ...+.+++++++.|+. +..+. +.=|+|-.+|-+.++
T Consensus 115 ~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~ 183 (193)
T 2oil_A 115 VVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL-FLETS--ALDSTNVELAFETVL 183 (193)
T ss_dssp THHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEC--TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHH
Confidence 44444555544 48999999999754322 1245567788888885 55444 345777777665554
No 204
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=62.37 E-value=7.3 Score=31.93 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=35.2
Q ss_pred ccCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 448 AYGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 448 ~fGvpvVVAiN~F~tDT~--aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
..++|+++++|+..-..+ ...+.+++++++.|+. +..++ ++=|+|-.+|-+.+.
T Consensus 109 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~ 164 (170)
T 1z08_A 109 GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAK-HYHTS--AKQNKGIEELFLDLC 164 (170)
T ss_dssp GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEB--TTTTBSHHHHHHHHH
T ss_pred CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEec--CCCCCCHHHHHHHHH
Confidence 368999999999654322 1245567888888885 44433 344677777766554
No 205
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=62.31 E-value=16 Score=30.13 Aligned_cols=55 Identities=9% Similarity=-0.079 Sum_probs=35.5
Q ss_pred hccCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 447 KAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 447 ~~fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
...++|+++++|+..-..+.+ .+..++++++.++. +..+.. +-|+|-.+|-+.++
T Consensus 111 ~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa--~~~~gv~~l~~~l~ 167 (181)
T 2fn4_A 111 DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVA-YFEASA--KLRLNVDEAFEQLV 167 (181)
T ss_dssp TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECBT--TTTBSHHHHHHHHH
T ss_pred CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEecC--CCCCCHHHHHHHHH
Confidence 456899999999975433222 24466778888885 554443 44677777665554
No 206
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=62.16 E-value=28 Score=28.69 Aligned_cols=54 Identities=6% Similarity=-0.098 Sum_probs=34.3
Q ss_pred ccCCcEEEEecCCCCC-CHHHHHHHHHHHH-HcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 448 AYGANVVVAVNMFATD-SKAELNAVRNAAM-AAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 448 ~fGvpvVVAiN~F~tD-T~aEi~~v~~~~~-~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
..++|+++++|+..-. .+...+.++++++ ..+.. +..++. +=|+|-.+|-+.++
T Consensus 114 ~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~gi~~l~~~l~ 169 (177)
T 1wms_A 114 PESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYP-YFETSA--KDATNVAAAFEEAV 169 (177)
T ss_dssp TTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCC-EEECCT--TTCTTHHHHHHHHH
T ss_pred cCCCcEEEEEECCcccccccCHHHHHHHHHhcCCce-EEEEeC--CCCCCHHHHHHHHH
Confidence 3789999999997642 2223445667777 44554 555554 44777777766554
No 207
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=62.15 E-value=5.5 Score=42.28 Aligned_cols=27 Identities=37% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.++++++|| |.|.|||||...+...|.
T Consensus 163 ~~~~~vi~G----~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 163 TRRISVISG----GPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp TBSEEEEEC----CTTSTHHHHHHHHHHHHH
T ss_pred cCCCEEEEe----CCCCCHHHHHHHHHHHHH
Confidence 368999999 789999999999999984
No 208
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=62.07 E-value=4.1 Score=37.84 Aligned_cols=28 Identities=36% Similarity=0.496 Sum_probs=23.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.|..|.++| |.|.||||++--|++.|+
T Consensus 25 ~~g~~I~I~G----~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 25 AIAPVITVDG----PSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TTSCEEEEEC----CTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHhcC
Confidence 4578888887 679999999988887774
No 209
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=61.84 E-value=4.6 Score=35.46 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=21.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|..|.++| |-|.||||++--|+.-+
T Consensus 4 ~~~~~i~i~G----~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAG----GTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEE----STTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 5688888888 45999999988777666
No 210
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=61.66 E-value=12 Score=32.50 Aligned_cols=62 Identities=8% Similarity=0.089 Sum_probs=38.0
Q ss_pred HHHHHHhcc--CCcEEEEecCCCCCCHHH----------HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 441 RHIANTKAY--GANVVVAVNMFATDSKAE----------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 441 ~HIen~~~f--GvpvVVAiN~F~tDT~aE----------i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
..++.++.+ ++|+||++|+..-..+.+ .+.+.+++++.|...+..+.. +=|+|-.+|-+.++
T Consensus 102 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa--~~g~gi~~l~~~l~ 175 (212)
T 2j0v_A 102 KWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSS--KTQQNVKAVFDTAI 175 (212)
T ss_dssp THHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCT--TTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccC--CCCCCHHHHHHHHH
Confidence 344445544 899999999965322222 345667788888633555543 44677776665554
No 211
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=61.51 E-value=4.3 Score=35.91 Aligned_cols=27 Identities=37% Similarity=0.593 Sum_probs=23.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|..|.+.| |.|.||||+.-.|+..+
T Consensus 31 ~~Ge~v~L~G----~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNG----DLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEEC----STTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHHhC
Confidence 5688888888 78999999999987776
No 212
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=61.35 E-value=36 Score=31.12 Aligned_cols=64 Identities=9% Similarity=0.071 Sum_probs=45.0
Q ss_pred ccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEe-c-----CCCC--CCHHH-------HHHHHHHHHHcCCCeEEEccc
Q 010555 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-N-----MFAT--DSKAE-------LNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 424 ~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAi-N-----~F~t--DT~aE-------i~~v~~~~~~~G~~~~~~s~~ 488 (507)
+..+|.+..++.+..+++.|+..+.+|.+.|+.+ . .|.. +.++. ++.+.+.|++.|+. +++-++
T Consensus 75 l~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~ 153 (294)
T 3vni_A 75 LSSPDPDIRKNAKAFYTDLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVD-FCLEVL 153 (294)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCE-EEEECC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEec
Confidence 3456777788899999999999999999999852 2 2331 22222 44555667788996 666666
No 213
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=61.34 E-value=13 Score=31.87 Aligned_cols=64 Identities=14% Similarity=0.044 Sum_probs=39.4
Q ss_pred hHHHHHHHHhc---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~---fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++...++.++. .++|+|+++|+..-..+. ..+.+++++++.|+. +..+.. +-|+|-.+|-+.++
T Consensus 98 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~gi~~l~~~l~ 166 (203)
T 1zbd_A 98 AVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE-FFEASA--KDNINVKQTFERLV 166 (203)
T ss_dssp HHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCE-EEECBT--TTTBSSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCe-EEEEEC--CCCCCHHHHHHHHH
Confidence 44444444444 589999999997643322 235567788888885 555543 44677766655543
No 214
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=61.33 E-value=4 Score=41.11 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=23.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+..++|+|+| |.|.||||+++-|++.++
T Consensus 8 ~~~~~i~i~G----ptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 8 SLPKAIFLMG----PTASGKTALAIELRKILP 35 (316)
T ss_dssp CCCEEEEEEC----CTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEEC----CCccCHHHHHHHHHHhCC
Confidence 4567898887 559999999999998884
No 215
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=61.16 E-value=21 Score=32.13 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=38.8
Q ss_pred HHHHHhhhHHHHHHHHhccCCcEEEEecCCCC--C-CH-------HHHHHHHHHHHHcCCCeEEEccc
Q 010555 431 LVEAGCVNLARHIANTKAYGANVVVAVNMFAT--D-SK-------AELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 431 al~~G~~NL~~HIen~~~fGvpvVVAiN~F~t--D-T~-------aEi~~v~~~~~~~G~~~~~~s~~ 488 (507)
..++.+..+++.|+..+.+|.+.|+. ..++. + .+ +.+..+.+.|++.|+. +++-+|
T Consensus 78 ~~~~~~~~~~~~i~~A~~lG~~~v~~-~~~p~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~ 143 (281)
T 3u0h_A 78 VFLRELSLLPDRARLCARLGARSVTA-FLWPSMDEEPVRYISQLARRIRQVAVELLPLGMR-VGLEYV 143 (281)
T ss_dssp HHHHHHHTHHHHHHHHHHTTCCEEEE-ECCSEESSCHHHHHHHHHHHHHHHHHHHGGGTCE-EEEECC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEE-eecCCCCCcchhhHHHHHHHHHHHHHHHHHcCCE-EEEEec
Confidence 46678889999999999999999984 23332 1 12 2344455566788996 666665
No 216
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=61.15 E-value=3.8 Score=36.84 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=21.3
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
++++|+++|. -|.||||.+--|++.|
T Consensus 6 ~~~~I~l~G~----~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGA----PGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEEC----TTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECC----CCCCHHHHHHHHHHHc
Confidence 4678999995 6999999988887766
No 217
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=61.01 E-value=5.7 Score=37.45 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=37.4
Q ss_pred HHHHhccCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 443 IANTKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 443 Ien~~~fGvpvVVAiN~F~tDT~aEi~-~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
+..++.+++|+||++|+..-....++. .+.++++..|++ ++.+. +.-|+|-.+|-+.+..
T Consensus 105 ~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~i~~S--A~~g~gi~el~~~i~~ 165 (274)
T 3i8s_A 105 TLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCP-VIPLV--STRGRGIEALKLAIDR 165 (274)
T ss_dssp HHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSC-EEECC--CGGGHHHHHHHHHHHT
T ss_pred HHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCC-EEEEE--cCCCCCHHHHHHHHHH
Confidence 344455699999999996321111110 245667778887 55444 5568888888776653
No 218
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=61.00 E-value=3.3 Score=41.90 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.1
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.++|+|+| |.|.||||+++-|++.++
T Consensus 3 ~~~i~i~G----ptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVG----PTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEEC----CTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEEC----CCcCCHHHHHHHHHHhCc
Confidence 56888887 569999999999999884
No 219
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=60.99 E-value=5.1 Score=36.33 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=22.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
..++.|+++|+ -|.||||.+.-|++.|
T Consensus 14 ~~~~~I~l~G~----~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGP----PGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECC----TTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHh
Confidence 34678999986 4999999999888877
No 220
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=60.88 E-value=8.6 Score=33.07 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=36.8
Q ss_pred HHHHhccCCcEEEEecCCCCCCHHH--HHHHHHHHHHc-CCCeEEEccccccCchhhHHHHHhhh
Q 010555 443 IANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAA-GAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 443 Ien~~~fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~-G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++.....++|++|++|+-.-..+.+ .+.+++++++. +.. +..++ ++-|+|-.+|-+.++
T Consensus 124 i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~-~~~~S--A~~g~gi~~l~~~l~ 185 (192)
T 2il1_A 124 IDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMR-FCEAS--AKDNFNVDEIFLKLV 185 (192)
T ss_dssp HHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCE-EEECB--TTTTBSHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCe-EEEEe--CCCCCCHHHHHHHHH
Confidence 3444446899999999976433222 24456777764 554 55444 566788777766554
No 221
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=60.30 E-value=20 Score=29.94 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=37.1
Q ss_pred HHHHhccCCcEEEEecCCCCCCHHHH----HHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 443 IANTKAYGANVVVAVNMFATDSKAEL----NAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 443 Ien~~~fGvpvVVAiN~F~tDT~aEi----~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++.++.+++|++|++|+..--+++|. +.+++++...+...+..+. ++-|+|-.+|-+.+.
T Consensus 126 ~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~gv~~l~~~l~ 189 (195)
T 3pqc_A 126 VEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTS--SVTGEGISELLDLIS 189 (195)
T ss_dssp HHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECC--TTTCTTHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEe--cCCCCCHHHHHHHHH
Confidence 34455669999999999765444333 4556666654532344444 456778777766654
No 222
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=60.15 E-value=33 Score=30.74 Aligned_cols=75 Identities=13% Similarity=0.043 Sum_probs=47.9
Q ss_pred CHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCC---CCHHH-------HHHHHHHHHHcCCCeEEEcccccc-----C
Q 010555 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFAT---DSKAE-------LNAVRNAAMAAGAFDAVVCSHHAH-----G 492 (507)
Q Consensus 428 nl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~t---DT~aE-------i~~v~~~~~~~G~~~~~~s~~wa~-----G 492 (507)
+.+..++....+++.|+..+.+|.+.||..--+.. +.++. +..+.+.|++.|+. +++-+++.. -
T Consensus 75 ~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~~~~~~~~~ 153 (278)
T 1i60_A 75 DEKGHNEIITEFKGMMETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVK-IALEFVGHPQCTVNT 153 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTCE-EEEECCCCTTBSSCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCE-EEEEecCCccchhcC
Confidence 44556778889999999999999999988422221 11222 33445556677996 777777544 2
Q ss_pred chhhHHHHHhh
Q 010555 493 GKGAFKEPVRM 503 (507)
Q Consensus 493 GeGa~~LA~~v 503 (507)
-+.+.+|.+.+
T Consensus 154 ~~~~~~l~~~~ 164 (278)
T 1i60_A 154 FEQAYEIVNTV 164 (278)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34445555443
No 223
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=60.13 E-value=6.9 Score=36.74 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=37.7
Q ss_pred HHHHhccCCcEEEEecCCCCCCHHHH-HHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 443 IANTKAYGANVVVAVNMFATDSKAEL-NAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 443 Ien~~~fGvpvVVAiN~F~tDT~aEi-~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
...+..+++|+|+++|+..--...++ ..+.++++..|++ ++.+. +.-|+|-.+|-+.+.+
T Consensus 103 ~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~~S--A~~g~gi~el~~~i~~ 163 (256)
T 3iby_A 103 TSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCS-VIPIQ--AHKNIGIPALQQSLLH 163 (256)
T ss_dssp HHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSC-EEECB--GGGTBSHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCC-EEEEE--CCCCCCHHHHHHHHHh
Confidence 34466789999999998632111111 1234566778887 55444 4557888888777653
No 224
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=59.80 E-value=61 Score=29.02 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=44.2
Q ss_pred ccCHHHHHHHhhhHHHHHHHHhccCCcEEEEec-CCCC---CCH-------HHHHHHHHHHHHcCCCeEEEccc
Q 010555 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVN-MFAT---DSK-------AELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 426 ~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN-~F~t---DT~-------aEi~~v~~~~~~~G~~~~~~s~~ 488 (507)
.++.+..++.+..+++.|+..+.+|.+.||..- .++. +++ +-++.+.+.|++.|+. +++-++
T Consensus 72 ~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~~ 144 (275)
T 3qc0_A 72 APDASGREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVP-LAIEPL 144 (275)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEECCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEeEC
Confidence 345567778889999999999999999988753 3432 322 2355566667788997 666654
No 225
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=59.74 E-value=8.9 Score=31.76 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=32.3
Q ss_pred CCc-EEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 450 GAN-VVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 450 Gvp-vVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
+.| +|++.|+..-..+.+ .+.+.+++++.|+. +..++. +=|+|-.+|-+.+.
T Consensus 114 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~gi~~l~~~l~ 168 (178)
T 2hxs_A 114 TQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFS-SHFVSA--KTGDSVFLCFQKVA 168 (178)
T ss_dssp CCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEEECT--TTCTTHHHHHHHHH
T ss_pred CCCeEEEEEEccccccccccCHHHHHHHHHHcCCc-EEEEeC--CCCCCHHHHHHHHH
Confidence 677 789999875432211 34566778888885 554443 34677776665554
No 226
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=59.33 E-value=23 Score=33.82 Aligned_cols=54 Identities=9% Similarity=0.043 Sum_probs=36.6
Q ss_pred HHHHHHHhc--cCCcEEEEecCCCCCCHHHH--------HHHHHHHHHcCC--CeEEEccccccCc
Q 010555 440 ARHIANTKA--YGANVVVAVNMFATDSKAEL--------NAVRNAAMAAGA--FDAVVCSHHAHGG 493 (507)
Q Consensus 440 ~~HIen~~~--fGvpvVVAiN~F~tDT~aEi--------~~v~~~~~~~G~--~~~~~s~~wa~GG 493 (507)
.+.+..+++ -++|+||++|+..-..+++. +.+.+++++.|+ ..+..+..|.+|+
T Consensus 103 ~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~~~i 168 (307)
T 3r7w_A 103 AKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESL 168 (307)
T ss_dssp HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTSSHH
T ss_pred HHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecCChH
Confidence 334445544 38999999999876553333 567788888884 3478888888433
No 227
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=59.32 E-value=7.4 Score=41.22 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=25.7
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
..+.+|+| |.|.|||||...+...|...-+++..+
T Consensus 195 ~~~~li~G----ppGTGKT~~~~~~i~~l~~~~~~~ilv 229 (624)
T 2gk6_A 195 RPLSLIQG----PPGTGKTVTSATIVYHLARQGNGPVLV 229 (624)
T ss_dssp CSEEEEEC----CTTSCHHHHHHHHHHHHHTSSSCCEEE
T ss_pred CCCeEEEC----CCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 45888888 789999999999988883223444333
No 228
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=59.21 E-value=25 Score=31.23 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=47.3
Q ss_pred CCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHH
Q 010555 362 PGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLAR 441 (507)
Q Consensus 362 ~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~ 441 (507)
..||||=+.+-+.+.-..-++. .-|.+|+|++-. . ..+..+.+
T Consensus 118 ~yD~viiD~p~~~~~~~~~~l~--------~ad~viiv~~~~-------------------------~----~~~~~~~~ 160 (245)
T 3ea0_A 118 FYDYIIVDFGASIDHVGVWVLE--------HLDELCIVTTPS-------------------------L----QSLRRAGQ 160 (245)
T ss_dssp HCSEEEEEEESSCCTTHHHHGG--------GCSEEEEEECSS-------------------------H----HHHHHHHH
T ss_pred hCCEEEEeCCCCCchHHHHHHH--------HCCEEEEEecCc-------------------------H----HHHHHHHH
Confidence 4599999887665432222221 357788887622 1 12334555
Q ss_pred HHHHHhccCC---cEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010555 442 HIANTKAYGA---NVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 442 HIen~~~fGv---pvVVAiN~F~tDT~aEi~~v~~~~~~~G~~ 481 (507)
.++.++++|. .+-+.+|++...+....+.+++ ..|.+
T Consensus 161 ~~~~l~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~---~~~~~ 200 (245)
T 3ea0_A 161 LLKLCKEFEKPISRIEIILNRADTNSRITSDEIEK---VIGRP 200 (245)
T ss_dssp HHHHHHTCSSCCSCEEEEEESTTSCTTSCHHHHHH---HHTSC
T ss_pred HHHHHHHhCCCccceEEEEecCCCCCCCCHHHHHH---HhCCC
Confidence 6666777764 3778999998776544333333 34554
No 229
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=59.16 E-value=9.8 Score=32.63 Aligned_cols=53 Identities=11% Similarity=0.047 Sum_probs=33.2
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEccccccCch-hhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGK-GAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~--aEi~~v~~~~~~~G~~~~~~s~~wa~GGe-Ga~~LA~~v~ 504 (507)
.++|+|++.|+..-..+ ...+.+++++++.++. +..++. +=|+ |-.+|-+.++
T Consensus 131 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa--~~g~~gi~~l~~~l~ 186 (196)
T 2atv_A 131 KNVTLILVGNKADLDHSRQVSTEEGEKLATELACA-FYECSA--CTGEGNITEIFYELC 186 (196)
T ss_dssp SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE-EEECCT--TTCTTCHHHHHHHHH
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHHhCCe-EEEECC--CcCCcCHHHHHHHHH
Confidence 68999999999654322 1234556778888885 555543 3355 6666555443
No 230
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=59.10 E-value=31 Score=29.63 Aligned_cols=67 Identities=7% Similarity=-0.118 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHhc----cCCcEEEEecCCCC----CCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 436 CVNLARHIANTKA----YGANVVVAVNMFAT----DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 436 ~~NL~~HIen~~~----fGvpvVVAiN~F~t----DT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
+.++..-++.+++ .++|+|++.|+..- +..-..+.+++++++.+...+..+. ++=|+|-.+|-+.++
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~S--a~~~~gv~~lf~~l~ 175 (184)
T 3ihw_A 101 FQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETC--ATYGLNVERVFQDVA 175 (184)
T ss_dssp HHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEB--TTTTBTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEec--CCCCCCHHHHHHHHH
Confidence 3344444555554 47999999999653 1222344567888888733354444 456777766655544
No 231
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=59.08 E-value=17 Score=31.22 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=34.7
Q ss_pred HHHHhccCCcEEEEecCCCCCCHH--------HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 443 IANTKAYGANVVVAVNMFATDSKA--------ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 443 Ien~~~fGvpvVVAiN~F~tDT~a--------Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++.....++|+||++|+..-..+. ..+...+++++.|+. +..+.. +=|+|-.+|-+.++
T Consensus 126 i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~SA--~~g~gv~el~~~l~ 192 (199)
T 2p5s_A 126 IEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL-FCETSA--KDGSNIVEAVLHLA 192 (199)
T ss_dssp HHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE-EEECCT--TTCTTHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe-EEEeeC--CCCCCHHHHHHHHH
Confidence 333334589999999997542111 124556778888885 555544 44677777766554
No 232
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=58.99 E-value=3.4 Score=35.42 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=19.1
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.|+++| |.|.||||++--|++.|+
T Consensus 6 ~i~i~G----~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIG----FMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEEC----CTTSCHHHHHHHHHHHHT
T ss_pred EEEEEc----CCCCCHHHHHHHHHHHcC
Confidence 466766 479999999988887773
No 233
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=58.95 E-value=8.7 Score=33.36 Aligned_cols=55 Identities=13% Similarity=0.027 Sum_probs=35.3
Q ss_pred hccCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 447 KAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 447 ~~fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
...++|++|++|+..-..+. ..+.+.+++++.++. +..+. ++=|+|-.+|-+.++
T Consensus 127 ~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--A~~g~gi~~l~~~l~ 183 (200)
T 2o52_A 127 ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETS--ALTGENVEEAFLKCA 183 (200)
T ss_dssp TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEC--TTTCTTHHHHHHHHH
T ss_pred cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHH
Confidence 34689999999997643222 234567788888885 55444 344677766655543
No 234
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=58.80 E-value=4.7 Score=40.77 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=27.1
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.++|+| |+|.||||+..-+...|. ..|++.+++
T Consensus 47 ~~li~G----~aGTGKT~ll~~~~~~l~-~~~~~~il~ 79 (459)
T 3upu_A 47 HVTING----PAGTGATTLTKFIIEALI-STGETGIIL 79 (459)
T ss_dssp EEEEEC----CTTSCHHHHHHHHHHHHH-HTTCCCEEE
T ss_pred EEEEEe----CCCCCHHHHHHHHHHHHH-hcCCceEEE
Confidence 899998 799999999999999994 667744433
No 235
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=58.80 E-value=35 Score=33.19 Aligned_cols=52 Identities=13% Similarity=0.166 Sum_probs=40.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 450 GvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
+.|+++++|+-.-....+++.+.+++++.+.. ++.++ +.=|+|-.+|-+.+.
T Consensus 280 ~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~iS--A~~g~gi~~l~~~i~ 331 (357)
T 2e87_A 280 DLPFLVVINKIDVADEENIKRLEKFVKEKGLN-PIKIS--ALKGTGIDLVKEEII 331 (357)
T ss_dssp TSCEEEEECCTTTCCHHHHHHHHHHHHHTTCC-CEECB--TTTTBTHHHHHHHHH
T ss_pred CCCEEEEEECcccCChHHHHHHHHHHHhcCCC-eEEEe--CCCCcCHHHHHHHHH
Confidence 89999999999888888888888888888876 44433 445788877776654
No 236
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=58.72 E-value=4.6 Score=33.94 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=18.4
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHH
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~q 95 (507)
++|+++|. .|.||||++--|++
T Consensus 3 ~~I~i~G~----~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGC----PGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECC----TTSSHHHHHHHHHH
T ss_pred eEEEEecC----CCCCHHHHHHHHHh
Confidence 57888885 69999999888876
No 237
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=58.53 E-value=7.8 Score=39.43 Aligned_cols=37 Identities=22% Similarity=0.122 Sum_probs=31.3
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
-++|-|+||+ |.-.-||||||..|.++| ++.|.++..
T Consensus 150 v~~k~i~v~G---TD~~VGK~~ts~~L~~~l-~~~G~~a~~ 186 (349)
T 2obn_A 150 LPCRRVLTVG---TDMAIGKMSTSLELHWAA-KLRGWRSKF 186 (349)
T ss_dssp CSSEEEEEEE---SSSSSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred ecceEEEEcC---CCccccceeHHHHHHHHH-HhcCCcEEE
Confidence 3578899998 455699999999999999 588998876
No 238
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=58.53 E-value=8 Score=42.13 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=29.9
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.|++|++||+ .|.||||++--|++.|. ..|...+..
T Consensus 51 ~g~lIvLtGl----sGSGKSTlAr~La~~L~-~~G~~~v~l 86 (630)
T 1x6v_B 51 RGCTVWLTGL----SGAGKTTVSMALEEYLV-CHGIPCYTL 86 (630)
T ss_dssp CCEEEEEECS----TTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCCEEEEEeC----CCCCHHHHHHHHHHHHH-hcCCeEEEe
Confidence 6889999997 69999999999999993 567776543
No 239
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=58.33 E-value=15 Score=30.41 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=35.0
Q ss_pred CCcEEEEecCCCCCCHHH------------HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 450 GANVVVAVNMFATDSKAE------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 450 GvpvVVAiN~F~tDT~aE------------i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
++|+++++|+..-..+.+ .+...+++++.|...+..+. ++=|+|-.+|-+.+++
T Consensus 112 ~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~l~~~l~~ 177 (182)
T 3bwd_D 112 GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECS--SKSQENVKGVFDAAIR 177 (182)
T ss_dssp TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECC--TTTCTTHHHHHHHHHH
T ss_pred CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEE--CCCCCCHHHHHHHHHH
Confidence 899999999975432222 24557788888863355444 4557787777666543
No 240
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=58.30 E-value=13 Score=32.00 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=28.1
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
.|+.+++.| |-|.||||+...++..+. .-|++ ++.+...
T Consensus 35 ~g~~~~l~G----~~G~GKTtL~~~i~~~~~-~~g~~-~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWG----EEGAGKSHLLQAWVAQAL-EAGKN-AAYIDAA 73 (149)
T ss_dssp CCSEEEEES----SSTTTTCHHHHHHHHHHH-TTTCC-EEEEETT
T ss_pred CCCEEEEEC----CCCCCHHHHHHHHHHHHH-hcCCc-EEEEcHH
Confidence 688888876 679999999999988884 34544 3344433
No 241
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=58.26 E-value=23 Score=30.81 Aligned_cols=65 Identities=11% Similarity=0.048 Sum_probs=39.7
Q ss_pred hHHHHHHHHhc---cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTKA---YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~---fGvpvVVAiN~F~tDT~--aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++.+.++.+++ .++|+||++|+..-..+ ...+.+++++++.|+..+..+.. +=|+|-.+|-+.++
T Consensus 119 ~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA--~~g~gi~~l~~~l~ 188 (201)
T 2hup_A 119 SVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSA--KDSSNVEEAFLRVA 188 (201)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBT--TTTBSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeC--CCCCCHHHHHHHHH
Confidence 34444444443 67999999999654322 12455678888888833555443 44677766655544
No 242
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=57.24 E-value=4.6 Score=34.04 Aligned_cols=63 Identities=17% Similarity=0.063 Sum_probs=38.9
Q ss_pred HHHHHHHHhccCCcEEEEecCCCCCCHHHH-HHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 439 LARHIANTKAYGANVVVAVNMFATDSKAEL-NAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 439 L~~HIen~~~fGvpvVVAiN~F~tDT~aEi-~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
+...++.+++.++|++++.|+-.-....++ +.+.+++++.|.. +..++ ++=|+|-.+|-+.++
T Consensus 101 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~i~ 164 (188)
T 2wjg_A 101 NLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPLS--AAKKMGIEELKKAIS 164 (188)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECB--GGGTBSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCC-eEEEE--ecCCCCHHHHHHHHH
Confidence 344566667789999999998432111111 1346677777886 55555 445677777766554
No 243
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=57.21 E-value=9.7 Score=31.00 Aligned_cols=54 Identities=11% Similarity=-0.031 Sum_probs=33.9
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
-++|+++++|+..-..+.+ .+...++++..++. +..++ +.-|+|-.+|-+.+++
T Consensus 108 ~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~ 163 (172)
T 2erx_A 108 ESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA-FMETS--AKLNHNVKELFQELLN 163 (172)
T ss_dssp -CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECB--TTTTBSHHHHHHHHHH
T ss_pred CCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEec--CCCCcCHHHHHHHHHH
Confidence 3799999999965332222 23456677777875 44443 4556777777766654
No 244
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=57.16 E-value=19 Score=33.79 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=43.0
Q ss_pred HHHHHHhccCCcEE-EEec---CCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCc
Q 010555 441 RHIANTKAYGANVV-VAVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGG 493 (507)
Q Consensus 441 ~HIen~~~fGvpvV-VAiN---~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GG 493 (507)
+.++.+++.|+++| +.++ .+..+..+.++.+.++|.+.|.. +++.-|...|.
T Consensus 36 ~~~~~lk~~G~N~VRi~~~~~~~w~~~~~~~ld~~v~~a~~~Gi~-Vild~h~~~~~ 91 (302)
T 1bqc_A 36 QAFADIKSHGANTVRVVLSNGVRWSKNGPSDVANVISLCKQNRLI-CMLEVHDTTGY 91 (302)
T ss_dssp THHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHHTTCE-EEEEEGGGTTT
T ss_pred HHHHHHHHcCCCEEEEEccCCcccCCCCHHHHHHHHHHHHHCCCE-EEEEeccCCCC
Confidence 56788899999998 6777 57777788999999999999996 88887776554
No 245
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=56.82 E-value=33 Score=29.77 Aligned_cols=60 Identities=12% Similarity=-0.033 Sum_probs=37.7
Q ss_pred HHHHHhccCCcEEEEecCCCCCCHHHHH----HHHHHHHH-------cCCCeEEEccccccCchhhHHHHHhhh
Q 010555 442 HIANTKAYGANVVVAVNMFATDSKAELN----AVRNAAMA-------AGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 442 HIen~~~fGvpvVVAiN~F~tDT~aEi~----~v~~~~~~-------~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.++.+++.++|+|+++|+-.-..+.+++ .+++.+.+ .+.. ++.+ =++-|+|-.+|-+.+.
T Consensus 136 ~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~--SA~~g~gv~~l~~~l~ 206 (223)
T 4dhe_A 136 MIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLT-VQLF--SALKRTGLDDAHALIE 206 (223)
T ss_dssp HHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEE-EEEE--BTTTTBSHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCe-EEEe--ecCCCcCHHHHHHHHH
Confidence 3455667999999999998776666643 33344443 2332 3333 3556788777766654
No 246
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=56.66 E-value=12 Score=35.45 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=51.3
Q ss_pred cceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHH
Q 010555 393 PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVR 472 (507)
Q Consensus 393 PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~ 472 (507)
-|.+-+|.-+.++|-. - .++-.+++.++.+-| +..++||++-.-.. |++|+....
T Consensus 85 Adevd~vinig~~~~g--~----------~~~v~~ei~~v~~a~----------~~~~lkvIlet~~l---~~e~i~~a~ 139 (220)
T 1ub3_A 85 ADEVDMVLHLGRAKAG--D----------LDYLEAEVRAVREAV----------PQAVLKVILETGYF---SPEEIARLA 139 (220)
T ss_dssp CSEEEEECCHHHHHTT--C----------HHHHHHHHHHHHHHS----------TTSEEEEECCGGGS---CHHHHHHHH
T ss_pred CCEEEecccchhhhCC--C----------HHHHHHHHHHHHHHH----------cCCCceEEEecCCC---CHHHHHHHH
Confidence 4677888888888621 1 223333344433333 33577777655443 589999999
Q ss_pred HHHHHcCCCeEEEccccccCchhhH
Q 010555 473 NAAMAAGAFDAVVCSHHAHGGKGAF 497 (507)
Q Consensus 473 ~~~~~~G~~~~~~s~~wa~GGeGa~ 497 (507)
+.|.++|+..+-.|+.|..||.--.
T Consensus 140 ~ia~eaGADfVKTsTGf~~~gat~~ 164 (220)
T 1ub3_A 140 EAAIRGGADFLKTSTGFGPRGASLE 164 (220)
T ss_dssp HHHHHHTCSEEECCCSSSSCCCCHH
T ss_pred HHHHHhCCCEEEeCCCCCCCCCCHH
Confidence 9999999974445666987776543
No 247
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=56.51 E-value=46 Score=27.58 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=35.5
Q ss_pred ccCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 448 AYGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 448 ~fGvpvVVAiN~F~tDT-~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
..++|+||++|+..-.. ....+.+.+++++.+.. +..++ +.=|+|-.+|-+.++
T Consensus 107 ~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~ 161 (189)
T 4dsu_A 107 SEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP-FIETS--AKTRQGVDDAFYTLV 161 (189)
T ss_dssp CSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHH
T ss_pred CCCCcEEEEEECccCcccccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHH
Confidence 36899999999976432 22334566778888886 55444 345677777665554
No 248
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=56.28 E-value=23 Score=30.78 Aligned_cols=64 Identities=13% Similarity=-0.007 Sum_probs=38.8
Q ss_pred hHHHHHHHHhc----cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTKA----YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~----fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++...++.+++ .++|+|++.|+-.-..+. ..+...+++++.++. +..+. ++=|+|-.+|-+.++
T Consensus 114 ~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~S--a~~~~~v~~lf~~l~ 183 (195)
T 3cbq_A 114 KVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIETS--AALHHNTRELFEGAV 183 (195)
T ss_dssp THHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEEEB--TTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCE-EEEEc--CCCCCCHHHHHHHHH
Confidence 44444444443 589999999987543221 234556788888875 44443 455667666655544
No 249
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=55.94 E-value=5 Score=35.31 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=20.4
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|++|.+||. -|.||||++--|++.+
T Consensus 19 ~~~~~i~i~G~----~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGV----TNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEES----TTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHhc
Confidence 56889999984 4999999876665433
No 250
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=55.91 E-value=17 Score=36.29 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=40.6
Q ss_pred hHHHHHHHHhccCCcE-EEEec-CCCCCCHHHHH----HHHHHHHHcCC--CeEEE--ccccc-cCchhhHHHHHhhh
Q 010555 438 NLARHIANTKAYGANV-VVAVN-MFATDSKAELN----AVRNAAMAAGA--FDAVV--CSHHA-HGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~fGvpv-VVAiN-~F~tDT~aEi~----~v~~~~~~~G~--~~~~~--s~~wa-~GGeGa~~LA~~v~ 504 (507)
...+|+..++.+|+|. ||++| +-.- .++.++ .+++++++.+. ..++. +..+. .=|+|-.+|-+.+.
T Consensus 99 qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~ 175 (370)
T 2elf_A 99 HTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARIN 175 (370)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHH
Confidence 5677888899999999 99999 8776 554444 34555544442 12444 33322 00677666665544
No 251
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=55.87 E-value=33 Score=31.40 Aligned_cols=58 Identities=7% Similarity=0.011 Sum_probs=41.7
Q ss_pred HHHHHhhhHHHHHHHHhccCCcEEEEe-cCCCCCCHHH-------HHHHHHHHHHcCCCeEEEcccc
Q 010555 431 LVEAGCVNLARHIANTKAYGANVVVAV-NMFATDSKAE-------LNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 431 al~~G~~NL~~HIen~~~fGvpvVVAi-N~F~tDT~aE-------i~~v~~~~~~~G~~~~~~s~~w 489 (507)
.-++.+..+++.|+..+.+|.+.||.. ...+.++++. ++.+.+.|++.|+. +.+-+++
T Consensus 96 ~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~ 161 (290)
T 3tva_A 96 TRASRVAEMKEISDFASWVGCPAIGLHIGFVPESSSPDYSELVRVTQDLLTHAANHGQA-VHLETGQ 161 (290)
T ss_dssp THHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCTTSHHHHHHHHHHHHHHHHHHTTTCE-EEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcccchHHHHHHHHHHHHHHHHHHHcCCE-EEEecCC
Confidence 345667899999999999999999974 3344444433 44555667788996 7777776
No 252
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=55.81 E-value=18 Score=31.50 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=40.0
Q ss_pred HHHHHhcc--CCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 442 HIANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 442 HIen~~~f--GvpvVVAiN~F~tDT~aE--------------i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.++.++++ ++|+||++|+-.-..+.+ .+...+++++.|...+..+. ++=|+|-.+|-+.+++
T Consensus 124 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--A~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 124 WYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS--ALTQRGLKTVFDEAIR 201 (204)
T ss_dssp HHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC--TTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee--CCCCCCHHHHHHHHHH
Confidence 34444444 899999999965332222 23456788888875455444 4568888888777654
No 253
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=55.71 E-value=12 Score=36.61 Aligned_cols=36 Identities=39% Similarity=0.386 Sum_probs=26.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
..|.+|.+.| |-|.||||+.--|+--+. .-+.+..+
T Consensus 100 ~~g~vi~lvG----~nGsGKTTll~~Lagll~-~~~g~V~l 135 (304)
T 1rj9_A 100 PKGRVVLVVG----VNGVGKTTTIAKLGRYYQ-NLGKKVMF 135 (304)
T ss_dssp CSSSEEEEEC----STTSSHHHHHHHHHHHHH-TTTCCEEE
T ss_pred CCCeEEEEEC----CCCCcHHHHHHHHHHHHH-hcCCEEEE
Confidence 3688998887 359999999999987774 44555443
No 254
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=55.65 E-value=12 Score=30.44 Aligned_cols=55 Identities=9% Similarity=-0.046 Sum_probs=35.2
Q ss_pred ccCCcEEEEecCCCCCCH---H--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 448 AYGANVVVAVNMFATDSK---A--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 448 ~fGvpvVVAiN~F~tDT~---a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
..++|+++++|+..-..+ . ..+...+++++.|+. +..++. +=|+|-.+|-+.+.+
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa--~~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 106 SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETSA--KTGENVNDVFLGIGE 165 (170)
T ss_dssp CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE-EEECCT--TTCTTHHHHHHHHHT
T ss_pred CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCE-EEEEeC--CCCCCHHHHHHHHHH
Confidence 358999999998653221 1 123456777778885 555443 447787777766653
No 255
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=55.60 E-value=19 Score=31.10 Aligned_cols=64 Identities=13% Similarity=-0.006 Sum_probs=38.3
Q ss_pred hHHHHHHHHhc----cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTKA----YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~~----fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++...++.+.+ .++|+||++|+..-..+. ..+..++++++.|+. +..+. ++=|+|-.+|-+.++
T Consensus 113 ~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l~ 182 (201)
T 3oes_A 113 VIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGAT-FMESS--ARENQLTQGIFTKVI 182 (201)
T ss_dssp HHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCe-EEEEe--CCCCCCHHHHHHHHH
Confidence 34444444444 489999999998643222 224456788888885 55443 445677766655544
No 256
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=55.48 E-value=7.1 Score=41.37 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=24.1
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+|..|++||. .|.||||++..|++.|+
T Consensus 394 ~~~~I~l~Gl----sGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNS----LTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTT----CCSCHHHHHHHHHHHHT
T ss_pred cceEEEeccc----CCCCHHHHHHHHHHHHH
Confidence 6778999997 49999999999999995
No 257
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=55.39 E-value=5.9 Score=35.14 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=18.2
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHH
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~q 95 (507)
+++|.+||. .|.||||++--|++
T Consensus 4 ~~~I~i~G~----~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGG----IGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECC----TTSCHHHHHHHHHH
T ss_pred ceEEEEECC----CCCCHHHHHHHHHH
Confidence 568899985 69999998766654
No 258
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=54.97 E-value=31 Score=29.94 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=36.3
Q ss_pred HHHHhcc--CCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 443 IANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 443 Ien~~~f--GvpvVVAiN~F~tDT~aE--------------i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++.++++ ++|+||++|+..-..+.+ .+...+++++.+...+..+. ++=|+|-.+|-+.++
T Consensus 120 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--A~~g~gi~el~~~l~ 195 (207)
T 2fv8_A 120 VPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS--AKTKEGVREVFETAT 195 (207)
T ss_dssp HHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC--TTTCTTHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee--CCCCCCHHHHHHHHH
Confidence 3444444 899999999975433222 12345677777774344444 445678777766554
No 259
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=54.80 E-value=21 Score=29.37 Aligned_cols=52 Identities=12% Similarity=-0.070 Sum_probs=34.0
Q ss_pred CCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 450 GANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 450 GvpvVVAiN~F~tDT~--aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++|+||++|+..-..+ .+.+...+++...|+. +..+. +.=|+|-.+|-+.+.
T Consensus 113 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~ 166 (181)
T 3tw8_B 113 DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQ-LFETS--AKENVNVEEMFNCIT 166 (181)
T ss_dssp TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECB--TTTTBSHHHHHHHHH
T ss_pred CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHH
Confidence 6999999999753322 2234567788888986 55444 445677777665554
No 260
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=54.67 E-value=5.6 Score=41.34 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.7
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++|+|+| |.|.||||+++-|++.++
T Consensus 3 ~~i~i~G----ptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAG----TTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEE----CSSSSHHHHHHHHHHHHT
T ss_pred cEEEEEC----cchhhHHHHHHHHHHHCC
Confidence 5788887 569999999999999985
No 261
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3
Probab=54.28 E-value=33 Score=35.27 Aligned_cols=56 Identities=21% Similarity=0.260 Sum_probs=46.2
Q ss_pred HHHHHHHHhccCCcEE-EEec---CCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchh
Q 010555 439 LARHIANTKAYGANVV-VAVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 439 L~~HIen~~~fGvpvV-VAiN---~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeG 495 (507)
.++.|+.|++.|+++| +.++ .|..+.-+.++.+.++|.+.|.. +++.-|...|...
T Consensus 41 ~~~di~~ik~~G~N~VRipv~~g~~~~~~~l~~ld~vv~~a~~~Gl~-VIlDlH~~~g~~~ 100 (464)
T 1wky_A 41 ATTAIEGIANTGANTVRIVLSDGGQWTKDDIQTVRNLISLAEDNNLV-AVLEVHDATGYDS 100 (464)
T ss_dssp HHHHHHHHHTTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHHTTCE-EEEEECTTTTCCC
T ss_pred hHHHHHHHHHCCCCEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCE-EEEEecCCCCCCC
Confidence 3567888999999998 6676 57788889999999999999996 8888787766554
No 262
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=54.15 E-value=42 Score=30.02 Aligned_cols=84 Identities=15% Similarity=0.072 Sum_probs=48.1
Q ss_pred cCCCCeEEeecccc-cccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhh
Q 010555 360 VGPGGFVVTEAGFG-ADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVN 438 (507)
Q Consensus 360 ag~~dyVVTEAGFG-aDlGaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~N 438 (507)
....||||-..+-+ .+......+ ...|.+|+|++-.. ..+. .
T Consensus 65 ~~~yD~viiD~p~~~~~~~~~~~l--------~~aD~viiv~~~~~----------------------~~~~-------~ 107 (209)
T 3cwq_A 65 APKYQNIVIDTQARPEDEDLEALA--------DGCDLLVIPSTPDA----------------------LALD-------A 107 (209)
T ss_dssp GGGCSEEEEEEECCCSSSHHHHHH--------HTSSEEEEEECSSH----------------------HHHH-------H
T ss_pred hhcCCEEEEeCCCCcCcHHHHHHH--------HHCCEEEEEecCCc----------------------hhHH-------H
Confidence 34569999887766 443333332 13577888876221 1122 2
Q ss_pred HHHHHHHHhcc-CCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCC
Q 010555 439 LARHIANTKAY-GANVVVAVNMFATDS-KAELNAVRNAAMAAGAF 481 (507)
Q Consensus 439 L~~HIen~~~f-GvpvVVAiN~F~tDT-~aEi~~v~~~~~~~G~~ 481 (507)
+.+-++.++++ +.++.|.+|++...+ ..+ +.+.+.+++.|..
T Consensus 108 ~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~-~~~~~~l~~~g~~ 151 (209)
T 3cwq_A 108 LMLTIETLQKLGNNRFRILLTIIPPYPSKDG-DEARQLLTTAGLP 151 (209)
T ss_dssp HHHHHHHHHHTCSSSEEEEECSBCCTTSCHH-HHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccCCCEEEEEEecCCccchHH-HHHHHHHHHcCCc
Confidence 33333344442 788999999998876 332 3445555666754
No 263
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=53.95 E-value=6.6 Score=35.95 Aligned_cols=43 Identities=30% Similarity=0.390 Sum_probs=32.2
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP 116 (507)
|+|+++| |.|.||||+.--|.+-+...++...-.+=|.|--|=
T Consensus 2 RpIVi~G----PSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE 44 (186)
T 1ex7_A 2 RPIVISG----PSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE 44 (186)
T ss_dssp CCEEEEC----CTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC
T ss_pred CEEEEEC----CCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC
Confidence 4577776 889999999888877664346666677889887663
No 264
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=53.89 E-value=7.8 Score=35.17 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=22.4
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 66 ~~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.+.|..|.++|. .|.||||++--|++-|
T Consensus 13 ~~~~~~i~i~G~----~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGP----ASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECS----SCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECC----CCCCHHHHHHHHHHHc
Confidence 467889999985 6999999988777666
No 265
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=53.85 E-value=27 Score=34.65 Aligned_cols=52 Identities=19% Similarity=0.145 Sum_probs=34.3
Q ss_pred hHHHHHHHHhccCCc-EEEEecCCCCC-CHHHHH----HHHHHHHHcCC----CeEEEcccc
Q 010555 438 NLARHIANTKAYGAN-VVVAVNMFATD-SKAELN----AVRNAAMAAGA----FDAVVCSHH 489 (507)
Q Consensus 438 NL~~HIen~~~fGvp-vVVAiN~F~tD-T~aEi~----~v~~~~~~~G~----~~~~~s~~w 489 (507)
...+|++.++.+|+| +||++|+-.-. .++.++ .+++++++.|. ..++.++.+
T Consensus 115 qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~ 176 (405)
T 2c78_A 115 QTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSAL 176 (405)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHH
T ss_pred HHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHH
Confidence 456788888889999 89999997654 233333 45667777773 225555544
No 266
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=53.77 E-value=11 Score=37.55 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=29.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
+.|++|+|+| |-|.||||+.--|..-+. .-+...+..+-+|
T Consensus 134 ~~g~~i~ivG----~~GsGKTTll~~l~~~~~-~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 134 RKMGLILVTG----PTGSGKSTTIASMIDYIN-QTKSYHIITIEDP 174 (372)
T ss_dssp SSSEEEEEEC----SSSSSHHHHHHHHHHHHH-HHSCCEEEEEESS
T ss_pred cCCCEEEEEC----CCCCCHHHHHHHHHhhcC-cCCCcEEEEeccc
Confidence 5688999998 349999999998888773 4334456555554
No 267
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=53.51 E-value=48 Score=29.97 Aligned_cols=65 Identities=5% Similarity=0.061 Sum_probs=44.6
Q ss_pred ccCHHHHHHHhhhHHHHHHHHhccCCcEEEEe-cCCCCC-CHHHH----HHHHHHHHH-cCCCeEEEcccccc
Q 010555 426 NENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFATD-SKAEL----NAVRNAAMA-AGAFDAVVCSHHAH 491 (507)
Q Consensus 426 ~enl~al~~G~~NL~~HIen~~~fGvpvVVAi-N~F~tD-T~aEi----~~v~~~~~~-~G~~~~~~s~~wa~ 491 (507)
.+|.+..++....+++.|+..+.+|.+.||.- ..+..+ +++.+ +.++++|++ .|+. +++-+++..
T Consensus 78 ~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~gv~-l~lEn~~~~ 149 (287)
T 2x7v_A 78 SPKDDIWQKSVELLKKEVEICRKLGIRYLNIHPGSHLGTGEEEGIDRIVRGLNEVLNNTEGVV-ILLENVSQK 149 (287)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCEECTTSCHHHHHHHHHHHHHHHHTTCCSCE-EEEECCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHcccCCCE-EEEeCCCCC
Confidence 45667778889999999999999999998762 333332 33333 445566554 5885 777777543
No 268
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=53.50 E-value=8 Score=32.88 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=21.9
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.+.|+++| |.|.||||++.-+++.+.
T Consensus 45 ~~~~ll~G----~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSG----TRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEEC----STTSCHHHHHHHHHHHHH
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHhc
Confidence 45889988 579999999999988874
No 269
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=53.46 E-value=30 Score=28.73 Aligned_cols=60 Identities=7% Similarity=-0.087 Sum_probs=34.8
Q ss_pred HHHHHhc---cCCcEEEEecCCCCC----CHHHHHHHHHHHHHc-CCCeEEEccccccCchhhHHHHHhhh
Q 010555 442 HIANTKA---YGANVVVAVNMFATD----SKAELNAVRNAAMAA-GAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 442 HIen~~~---fGvpvVVAiN~F~tD----T~aEi~~v~~~~~~~-G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.+..++. -++|+|++.|+..-. .....+.+++++++. +.. +..+. ++=|+|-.+|-+.++
T Consensus 97 ~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~lf~~l~ 164 (178)
T 2iwr_A 97 QLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCS-YYETX--ATYGLNVDRVFQEVA 164 (178)
T ss_dssp HHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEE-EEEEB--TTTTBTHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCe-EEEEe--ccccCCHHHHHHHHH
Confidence 3455554 389999999996531 111234456677765 454 44443 455677766655543
No 270
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=53.24 E-value=13 Score=37.70 Aligned_cols=37 Identities=27% Similarity=-0.020 Sum_probs=30.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
-++|-|+||+... .-|||||+..|.++| .+.|.++..
T Consensus 167 i~~~ri~v~GTDt---~vGKt~t~~~L~~~l-~~~G~~v~~ 203 (350)
T 2g0t_A 167 KKIKVVGVFGTDC---VVGKRTTAVQLWERA-LEKGIKAGF 203 (350)
T ss_dssp CCSEEEEEEESSS---SSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred ecceEEEEecCCC---CccCccHHHHHHHHH-HhcCCeEEE
Confidence 3578899999443 589999999999999 588998754
No 271
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=53.20 E-value=43 Score=27.43 Aligned_cols=53 Identities=9% Similarity=-0.020 Sum_probs=32.8
Q ss_pred cCCcEEEEecCCCCCCHH---HHHHHHHHHHH-cCCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSKA---ELNAVRNAAMA-AGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~a---Ei~~v~~~~~~-~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.++|+++++|+..-..++ ..+.+.+++++ .+.. +..++ ++-|+|-.+|-+.++
T Consensus 117 ~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~ 173 (182)
T 1ky3_A 117 ETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIP-LFLTS--AKNAINVDTAFEEIA 173 (182)
T ss_dssp TTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCC-EEEEB--TTTTBSHHHHHHHHH
T ss_pred CCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCe-EEEEe--cCCCCCHHHHHHHHH
Confidence 789999999997652221 23455667763 4554 55444 445677776665554
No 272
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=53.15 E-value=16 Score=32.23 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=34.9
Q ss_pred HhccCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 446 TKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 446 ~~~fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
....++|+||+.|+-.-..+.+ .+.+++++++.+.. +..+. ++-|+|-.+|-+.++
T Consensus 127 ~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~g~gv~~l~~~l~ 184 (201)
T 2ew1_A 127 YASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY-YLETS--AKESDNVEKLFLDLA 184 (201)
T ss_dssp HSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHH
T ss_pred hcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHH
Confidence 3346899999999965432211 23456777888886 55444 355677766655543
No 273
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=53.04 E-value=20 Score=30.23 Aligned_cols=54 Identities=11% Similarity=-0.034 Sum_probs=35.2
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT-~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.++|+||++|+-.-.. +...+...+++++.++. +..++ +.-|+|-.+|-+.+++
T Consensus 113 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~ 167 (199)
T 2gf0_A 113 EDIPVMLVGNKCDETQREVDTREAQAVAQEWKCA-FMETS--AKMNYNVKELFQELLT 167 (199)
T ss_dssp GGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCE-EEECB--TTTTBSHHHHHHHHHH
T ss_pred CCCCEEEEEECccCCccccCHHHHHHHHHHhCCe-EEEEe--cCCCCCHHHHHHHHHH
Confidence 3899999999976432 12234456677778875 44444 4557888877776654
No 274
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=52.92 E-value=12 Score=37.09 Aligned_cols=57 Identities=7% Similarity=-0.079 Sum_probs=32.1
Q ss_pred cCCcEEEEecCCCCCCHHHHHH----HHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 449 YGANVVVAVNMFATDSKAELNA----VRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aEi~~----v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
-++|+|+++|+-..-++.|+.. +.+++++.|+.-+..|..-.++.+.-.+|++.+..
T Consensus 173 ~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~l~~~i~~ 233 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKA 233 (361)
T ss_dssp S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHHHHHHHHh
Confidence 5799999999999888888854 55566666775222232233345556667766643
No 275
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=52.64 E-value=12 Score=37.64 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=34.4
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~ 117 (507)
+.|.+|+|+| |.|.||||++.-++..+ .+.|.+++..==|.|.-|.
T Consensus 72 ~~G~li~I~G----~pGsGKTtlal~la~~~-~~~g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 72 PRGRITEIYG----PESGGKTTLALAIVAQA-QKAGGTCAFIDAEHALDPV 117 (366)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHH-HHTTCCEEEEESSCCCCHH
T ss_pred cCCcEEEEEc----CCCCChHHHHHHHHHHH-HHCCCeEEEEECCCChhHH
Confidence 5799999987 56999999999998887 3567666555555554443
No 276
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=52.61 E-value=14 Score=35.01 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=25.7
Q ss_pred hhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 59 VLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 59 ~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+++.+. -+.|.+|+|+| |-|.||||+.--|..-+
T Consensus 16 vl~~i~-i~~g~~v~i~G----p~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTG----PTGSGKSTTIASMIDYI 49 (261)
T ss_dssp HHHHGG-GCSSEEEEEEC----STTCSHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEEC----CCCccHHHHHHHHHHhC
Confidence 344443 35689999998 45999999998887766
No 277
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=52.57 E-value=13 Score=36.86 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=29.0
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 66 ~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
.+.|.+|.+.|- -|.|||||.-=|+--+. .-|.+..+.
T Consensus 126 ~~~g~vi~lvG~----nGaGKTTll~~Lag~l~-~~~g~V~l~ 163 (328)
T 3e70_C 126 AEKPYVIMFVGF----NGSGKTTTIAKLANWLK-NHGFSVVIA 163 (328)
T ss_dssp SCSSEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCCCeEEEEECC----CCCCHHHHHHHHHHHHH-hcCCEEEEE
Confidence 356899999884 69999999999988773 556655443
No 278
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=52.52 E-value=12 Score=36.48 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=26.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+.|.+|.+.| |-|.|||||.--|+--+. .-+.+..
T Consensus 98 ~~g~vi~lvG----~nGsGKTTll~~Lag~l~-~~~g~V~ 132 (302)
T 3b9q_A 98 RKPAVIMIVG----VNGGGKTTSLGKLAHRLK-NEGTKVL 132 (302)
T ss_dssp SSCEEEEEEC----CTTSCHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCCcEEEEEc----CCCCCHHHHHHHHHHHHH-HcCCeEE
Confidence 4688999998 679999999998887773 4454443
No 279
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=52.51 E-value=9.8 Score=40.50 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=27.7
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcC-CcE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLD-KKV 105 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lg-k~a 105 (507)
.+|.+|++||+ .|.||||++.-|.+.|+ ..| ...
T Consensus 394 q~~~~I~l~Gl----sGSGKSTiA~~La~~L~-~~G~~~~ 428 (573)
T 1m8p_A 394 TQGFTIFLTGY----MNSGKDAIARALQVTLN-QQGGRSV 428 (573)
T ss_dssp TCCEEEEEECS----TTSSHHHHHHHHHHHHH-HHCSSCE
T ss_pred ccceEEEeecC----CCCCHHHHHHHHHHHhc-ccCCceE
Confidence 35789999997 59999999999999995 556 443
No 280
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=52.43 E-value=8.2 Score=35.30 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=21.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|.+|-+|| |-|.||||++--|+.-|
T Consensus 23 ~~g~iigI~G----~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSG----GTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEEC----STTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 4688888887 77999999998776655
No 281
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=52.29 E-value=6 Score=39.91 Aligned_cols=25 Identities=20% Similarity=0.594 Sum_probs=21.4
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++|+|+| |.|.||||++.-|++.|+
T Consensus 8 ~lI~I~G----ptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVG----PTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEEC----STTSSHHHHHHHHHHHTT
T ss_pred ceEEEEC----CCcCcHHHHHHHHHHHcC
Confidence 5888888 469999999999999884
No 282
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=52.13 E-value=10 Score=38.49 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=27.0
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
++.|-|||.+ ||||||-=|++.| ...|+++.
T Consensus 112 ~~~IaVTGTn------GKTTTt~ml~~iL-~~~g~~~~ 142 (451)
T 3lk7_A 112 SQLIGITGSN------GKTTTTTMIAEVL-NAGGQRGL 142 (451)
T ss_dssp SEEEEEECSS------CHHHHHHHHHHHH-HHTTCCEE
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HhcCCCEE
Confidence 5899999976 9999999999999 57898764
No 283
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=52.06 E-value=7.8 Score=35.64 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=21.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+..+-||++| |.|.||||++..+++.+
T Consensus 62 ~~~~~vLl~G----~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEG----PPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEEC----STTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CCCCcHHHHHHHHHHHh
Confidence 3455677776 66999999998888876
No 284
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=51.95 E-value=39 Score=32.31 Aligned_cols=60 Identities=22% Similarity=0.142 Sum_probs=40.5
Q ss_pred HHHhccCCcEEEEecCCCCCC-HHHH-HHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 444 ANTKAYGANVVVAVNMFATDS-KAEL-NAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 444 en~~~fGvpvVVAiN~F~tDT-~aEi-~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
+.+++.+.|+++++|+-.... .+++ +.+.++++..|...++ ..-+.=|+|..+|.+.+..
T Consensus 110 ~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i--~iSA~~g~~v~~l~~~i~~ 171 (301)
T 1ega_A 110 NKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIV--PISAETGLNVDTIAAIVRK 171 (301)
T ss_dssp HHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEE--ECCTTTTTTHHHHHHHHHT
T ss_pred HHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceE--EEECCCCCCHHHHHHHHHH
Confidence 345568999999999987766 4555 5566676666763233 2345567788888777654
No 285
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=51.89 E-value=7.6 Score=35.90 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=21.7
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|+++.++| |-|.||||+.--|..-+
T Consensus 14 ~~G~ii~l~G----psGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSA----PSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEEC----CTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHhccC
Confidence 6799999998 78999999877765544
No 286
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=51.79 E-value=5.5 Score=44.18 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=23.6
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhc
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL 101 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~l 101 (507)
-|-|+|+| |-.|.||||+|.||.++|. +.
T Consensus 34 ~~~l~I~g---t~s~vGKT~vt~gL~r~l~-~~ 62 (831)
T 4a0g_A 34 HPTYLIWS---ANTSLGKTLVSTGIAASFL-LQ 62 (831)
T ss_dssp SCEEEEEE---SSSSSCHHHHHHHHHHHHH-SC
T ss_pred cccEEEEE---CCCCCCHHHHHHHHHHHHH-hc
Confidence 34577776 5679999999999999994 65
No 287
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=51.49 E-value=39 Score=29.62 Aligned_cols=53 Identities=15% Similarity=0.076 Sum_probs=34.6
Q ss_pred CCcEEEEecCCCCCCHHHH--------------HHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 450 GANVVVAVNMFATDSKAEL--------------NAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 450 GvpvVVAiN~F~tDT~aEi--------------~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++|+|+++|+-.-..+.+. +..++++++.|...+..+. ++=|+|-.+|-+.++
T Consensus 138 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--A~~g~gi~el~~~l~ 204 (214)
T 2j1l_A 138 KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS--ARLHDNVHAVFQEAA 204 (214)
T ss_dssp SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB--TTTTBSHHHHHHHHH
T ss_pred CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec--CCCCCCHHHHHHHHH
Confidence 8999999999765443322 3346788888873355444 455677777666554
No 288
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=51.35 E-value=29 Score=30.56 Aligned_cols=55 Identities=9% Similarity=0.050 Sum_probs=35.5
Q ss_pred hHHHHHHHHhccCCcEEEEecCCC--CCCHHHHHHHHHHHHHcCC-CeEEEccccccC
Q 010555 438 NLARHIANTKAYGANVVVAVNMFA--TDSKAELNAVRNAAMAAGA-FDAVVCSHHAHG 492 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN~F~--tDT~aEi~~v~~~~~~~G~-~~~~~s~~wa~G 492 (507)
...+-|+.+++.|+++.+-....+ .|+.+|++.+.+++++.|. ..+.+...+.-|
T Consensus 148 ~~~~~i~~l~~~g~~v~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (245)
T 3c8f_A 148 RTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELG 205 (245)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCS
T ss_pred HHHHHHHHHHhcCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccC
Confidence 344445566677888766543333 5889999999999999995 334343333333
No 289
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=51.34 E-value=11 Score=37.64 Aligned_cols=32 Identities=31% Similarity=0.269 Sum_probs=27.7
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+.|.|-|||.+ |||||+-=|++.| ...|+++.
T Consensus 48 ~~~vI~VTGTn------GKtTT~~~l~~iL-~~~G~~~g 79 (422)
T 1w78_A 48 APFVFTVAGTN------GKGTTCRTLESIL-MAAGYKVG 79 (422)
T ss_dssp SSEEEEEECSS------CHHHHHHHHHHHH-HHTTCCEE
T ss_pred CCcEEEEeCCc------ChHHHHHHHHHHH-HHCCCCEE
Confidence 46899999986 9999999999999 57888864
No 290
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=51.32 E-value=13 Score=32.85 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=25.7
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHH-HHhhhcCCcEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ-ALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~q-aL~~~lgk~a~ 106 (507)
+.|.+++|+| +.|.||||.+.=++- ++ ...|+++.
T Consensus 28 ~~G~l~~i~G----~pG~GKT~l~l~~~~~~~-~~~~~~v~ 63 (251)
T 2zts_A 28 PEGTTVLLTG----GTGTGKTTFAAQFIYKGA-EEYGEPGV 63 (251)
T ss_dssp ETTCEEEEEC----CTTSSHHHHHHHHHHHHH-HHHCCCEE
T ss_pred CCCeEEEEEe----CCCCCHHHHHHHHHHHHH-HhcCCCce
Confidence 6799999999 579999999887653 33 24455554
No 291
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=51.25 E-value=27 Score=29.76 Aligned_cols=66 Identities=11% Similarity=0.067 Sum_probs=40.8
Q ss_pred hHHHHHHHHhc--cCCcEEEEecCCCCCCHHHHH-----HHHHHHHHcCCCe---EEEccccccCc-hhhHHHHHhhhh
Q 010555 438 NLARHIANTKA--YGANVVVAVNMFATDSKAELN-----AVRNAAMAAGAFD---AVVCSHHAHGG-KGAFKEPVRMLH 505 (507)
Q Consensus 438 NL~~HIen~~~--fGvpvVVAiN~F~tDT~aEi~-----~v~~~~~~~G~~~---~~~s~~wa~GG-eGa~~LA~~v~~ 505 (507)
++...++.++. .++|+|++.|+..-..+.++. ...+++++.|... +..++ ++=| +|-.+|.+.+++
T Consensus 98 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~~~~~l~~~i~~ 174 (184)
T 2zej_A 98 AMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVN--ATEESDALAKLRKTIIN 174 (184)
T ss_dssp THHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECC--TTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEe--cccCchhHHHHHHHHHH
Confidence 55555555543 379999999998766665542 2345666667641 23333 3445 588888887754
No 292
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=50.86 E-value=20 Score=33.35 Aligned_cols=57 Identities=7% Similarity=-0.041 Sum_probs=31.2
Q ss_pred HHHhccCCcEEEEecCCCCCCHHHHHH----HHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 444 ANTKAYGANVVVAVNMFATDSKAELNA----VRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 444 en~~~fGvpvVVAiN~F~tDT~aEi~~----v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
+.++. ++|+|+++|+-..-+++|++. +++.+...|+. +.. .=+.-|+|-.+|-+.+.
T Consensus 139 ~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~-v~~--~sa~~~~~~~~l~~~l~ 199 (274)
T 3t5d_A 139 KRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIK-IYE--FPETDDEEENKLVKKIK 199 (274)
T ss_dssp HHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCC-CCC--C-----------CHHHH
T ss_pred HHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCe-EEc--CCCCCChhHHHHHHHHh
Confidence 33444 899999999988888888854 45555667775 221 12455677777666554
No 293
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=50.59 E-value=5.7 Score=33.67 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=20.3
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..|++||. .|.||||++--|++.|+
T Consensus 8 ~~i~l~G~----~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGF----MGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESC----TTSSHHHHHHHHHHHHT
T ss_pred ceEEEECC----CCCCHHHHHHHHHHHhC
Confidence 36888885 69999999988887773
No 294
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=50.55 E-value=8.8 Score=35.41 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=22.4
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
..++.|+++| |-|.||||.+-=|++.+
T Consensus 27 ~~~~~I~l~G----~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLG----APGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEEC----CTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 3578999999 46999999998887766
No 295
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=50.53 E-value=13 Score=37.54 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=47.5
Q ss_pred HHHHHHHcCCCCcccccccCc-----eeeech--hhhhhhc---CCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhh
Q 010555 31 ISEIAQELNLKPNHYDLYGKY-----KAKVLL--SVLDELE---GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF 100 (507)
Q Consensus 31 I~~iA~~lgl~~~~le~YG~~-----kAKi~l--~~l~~~~---~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~ 100 (507)
|.+|-+++|-.. +.+.+.. ...|+. ..||++- .-+.|.+++|.| |.|.||||++.-++..+ ..
T Consensus 15 ~~~~~~~~~~~~--~~~l~~~~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~G----ppGsGKSTLal~la~~~-~~ 87 (356)
T 3hr8_A 15 LKRIEENFGKGS--IMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFG----QESSGKTTLALHAIAEA-QK 87 (356)
T ss_dssp HHHHHHHHCTTS--SCCTTCCSCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEE----STTSSHHHHHHHHHHHH-HH
T ss_pred HHHHHHHhCCCC--ceechhccccCCCceecCCCHHHHHHhccCCccCCcEEEEEC----CCCCCHHHHHHHHHHHH-Hh
Confidence 667777777542 2222221 223443 3455532 236799999998 68999999999998877 35
Q ss_pred cCCcEEEEecCCCCC
Q 010555 101 LDKKVVTCLRQPSQG 115 (507)
Q Consensus 101 lgk~a~~~lRePSlG 115 (507)
.|.+++..=-|.+.-
T Consensus 88 ~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 88 MGGVAAFIDAEHALD 102 (356)
T ss_dssp TTCCEEEEESSCCCC
T ss_pred cCCeEEEEecccccc
Confidence 566654433344443
No 296
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=50.22 E-value=9.5 Score=33.18 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=24.0
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
+-|+++| |.|.||||++..++..+. .-|.+
T Consensus 55 ~~~~l~G----~~GtGKT~la~~i~~~~~-~~~~~ 84 (202)
T 2w58_A 55 KGLYLHG----SFGVGKTYLLAAIANELA-KRNVS 84 (202)
T ss_dssp CEEEEEC----STTSSHHHHHHHHHHHHH-TTTCC
T ss_pred CeEEEEC----CCCCCHHHHHHHHHHHHH-HcCCe
Confidence 6788887 679999999999999884 44544
No 297
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=49.91 E-value=7.8 Score=36.79 Aligned_cols=48 Identities=31% Similarity=0.553 Sum_probs=31.4
Q ss_pred cccCceeeechhhhh-hhc-CCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 47 LYGKYKAKVLLSVLD-ELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 47 ~YG~~kAKi~l~~l~-~~~-~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.+|...++-.+..+. .+. .+..++-||++| |.|.||||++..+++.++
T Consensus 46 ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~G----ppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAG----QPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp EESCHHHHHHHHHHHHHHHTTCCTTCEEEEEE----STTSSHHHHHHHHHHHHC
T ss_pred ccChHHHHHHHHHHHHHHHcCCCCCCEEEEEC----CCCCCHHHHHHHHHHHhc
Confidence 345555544433232 222 223467899998 579999999999998884
No 298
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=49.80 E-value=56 Score=30.00 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=44.1
Q ss_pred ccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecC---CCCCCHHH-------HHHHHHHHHHcCCCeEEEcccc
Q 010555 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNM---FATDSKAE-------LNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 426 ~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~---F~tDT~aE-------i~~v~~~~~~~G~~~~~~s~~w 489 (507)
.++.+..++.+..+++.|+..+.+|.+.||.--. +..++++. +..+.+.|++.|+. +++-+++
T Consensus 97 ~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~ 169 (295)
T 3cqj_A 97 SEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVT-LAMEIMD 169 (295)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTCE-EEEECCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCHHHHHHHHHHHHHHHHHHHHHhCCE-EEEeeCC
Confidence 3455677888899999999999999999885311 12233433 44555667788996 7777765
No 299
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=49.64 E-value=9.1 Score=37.12 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=26.7
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
.+.|-|||.+ ||||||-=|++.| ...|+++.
T Consensus 108 ~~~IaVTGTn------GKTTTt~ll~~iL-~~~g~~~~ 138 (326)
T 3eag_A 108 HWVLGVAGTH------GKTTTASMLAWVL-EYAGLAPG 138 (326)
T ss_dssp SEEEEEESSS------CHHHHHHHHHHHH-HHTTCCCE
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HHcCCCce
Confidence 5789999986 9999999999999 58898753
No 300
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=49.63 E-value=8 Score=36.76 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=22.3
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|+.|.++|. .|.||||++.-|++.|+
T Consensus 48 g~~i~l~G~----~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGM----MGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECS----TTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECC----CCCCHHHHHHHHHHhcC
Confidence 888999996 59999999988888773
No 301
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=49.54 E-value=10 Score=38.52 Aligned_cols=112 Identities=14% Similarity=0.202 Sum_probs=65.5
Q ss_pred CCCCceeeccccchhhHHHHhhhccCcccceeecCceeEEeccCcccccccCchHHHHHHHHHhcCCCCeEEeecc----
Q 010555 296 KAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAG---- 371 (507)
Q Consensus 296 ~~g~PVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~VHgGPFANIAhG~nSviAtk~ALklag~~dyVVTEAG---- 371 (507)
..|++-+...+. ||+.++ +.+++.=.+||| +.||.+-..+.++-...++..|.-|.-.
T Consensus 14 ~~~~~~~~C~~~--Ga~~~~----------~~I~d~~~i~hg------p~GC~~~~~~~~~~~~f~e~~~~~t~l~E~di 75 (460)
T 2xdq_A 14 ETGNYHTFCPIS--CVAWLY----------QKIEDSFFLVIG------TKTCGYFLQNAMGVMIFAEPRYAMAELEEGDI 75 (460)
T ss_dssp CCCCCCCCCGGG--HHHHHH----------HHSTTEEEEEEE------CHHHHHHHHHHTGGGGGSCCSEEEEECCHHHH
T ss_pred cCCCCCCCCcHH--HHHHHH----------cCCCCcEEEEEC------CCcccchhhhhhhhhcccCCccccccCchhhh
Confidence 456776666654 444333 234555689999 5789887765443333344566666532
Q ss_pred ---ccccccccccccccccc--CCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHH
Q 010555 372 ---FGADIGAEKFMNIKCRY--SGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANT 446 (507)
Q Consensus 372 ---FGaDlGaEKF~dIKCr~--sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~ 446 (507)
||. -||..+. |+. .-.+|++++|++|.- .++..+|++++-+-+.
T Consensus 76 v~~~Gg---~ekL~~~-i~~~~~~~~P~~I~v~~TC~------------------~~iIGdDi~~v~~~~~--------- 124 (460)
T 2xdq_A 76 SAQLND---YEELKRL-CLEIKRDRNPSVIVWIGTCT------------------TEIIKMDLEGLAPKLE--------- 124 (460)
T ss_dssp TTSSCH---HHHHHHH-HHHHHHHHCCSEEEEEECHH------------------HHHTTCCHHHHHHHHH---------
T ss_pred hhhcCC---hHHHHHH-HHHHHHhcCCCEEEEECCCH------------------HHHHhhCHHHHHHHHh---------
Confidence 553 3554331 221 134799999998843 4666788877655442
Q ss_pred hccCCcEEEE
Q 010555 447 KAYGANVVVA 456 (507)
Q Consensus 447 ~~fGvpvVVA 456 (507)
+++|+|||.+
T Consensus 125 ~~~~ipVi~v 134 (460)
T 2xdq_A 125 AEIGIPIVVA 134 (460)
T ss_dssp HHHSSCEEEE
T ss_pred hccCCcEEEE
Confidence 1348887764
No 302
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=49.52 E-value=13 Score=41.27 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=25.4
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+.+.+|+| |.|.|||||...+...|-..-+++..
T Consensus 371 ~~~~lI~G----ppGTGKT~ti~~~i~~l~~~~~~~il 404 (800)
T 2wjy_A 371 RPLSLIQG----PPGTGKTVTSATIVYHLARQGNGPVL 404 (800)
T ss_dssp SSEEEEEC----CTTSCHHHHHHHHHHHHHTTCSSCEE
T ss_pred CCeEEEEc----CCCCCHHHHHHHHHHHHHHcCCCcEE
Confidence 46888888 88999999999998888422344433
No 303
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=49.42 E-value=80 Score=28.47 Aligned_cols=66 Identities=11% Similarity=0.065 Sum_probs=45.4
Q ss_pred cccCHHHHHHHhhhHHHHHHHHhccCCcEEEEe-cCCCC--CCHHHH----HHHHHHHHH-cCCCeEEEcccccc
Q 010555 425 LNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFAT--DSKAEL----NAVRNAAMA-AGAFDAVVCSHHAH 491 (507)
Q Consensus 425 ~~enl~al~~G~~NL~~HIen~~~fGvpvVVAi-N~F~t--DT~aEi----~~v~~~~~~-~G~~~~~~s~~wa~ 491 (507)
..++.+..++.+..++++|+..+.+|.+.||.- ..+.. +.++.+ +.+++++.+ .|+. +++-+++..
T Consensus 77 ~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~a~~~gv~-l~lEn~~~~ 150 (285)
T 1qtw_A 77 GHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVT-AVIENTAGQ 150 (285)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTTSCHHHHHHHHHHHHHHHHHHCSSCE-EEEECCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHhccCCCE-EEEecCCCC
Confidence 346677788899999999999999999998763 33333 233333 345555443 6885 778777644
No 304
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=49.14 E-value=11 Score=38.34 Aligned_cols=41 Identities=27% Similarity=0.225 Sum_probs=31.5
Q ss_pred hhhhhcC-CCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 59 VLDELEG-SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 59 ~l~~~~~-~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+++++.. +++-|+|-|||.| |||||+-=|.+.| ...|+++-
T Consensus 41 ll~~lg~p~~~~~vI~VtGTN------GKgSt~~~l~~iL-~~~G~~vg 82 (437)
T 3nrs_A 41 VAERLDLLKPAPKIFTVAGTN------GKGTTCCTLEAIL-LAAGLRVG 82 (437)
T ss_dssp HHHHTTCSCSSSEEEEEECSS------SHHHHHHHHHHHH-HHTTCCEE
T ss_pred HHHHcCCccccCCEEEEECCc------ChHHHHHHHHHHH-HHCCCcEE
Confidence 3444432 3457899999997 9999999999999 47798863
No 305
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=48.82 E-value=27 Score=33.42 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=46.7
Q ss_pred HHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHc-CCCeEEEccccccCchhhHHHHHhh
Q 010555 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAA-GAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 439 L~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~-G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
+..|++...+.|+|+|+.-=- -++++++.|+++|++. ++. ++.+..|+.|..=-.+|++..
T Consensus 58 ~~~~~~~a~~~g~~~VigTTG---~~~e~~~~l~~aa~~~~~~~-vv~a~N~siGv~ll~~l~~~a 119 (245)
T 1p9l_A 58 VMGNLEFLIDNGIHAVVGTTG---FTAERFQQVESWLVAKPNTS-VLIAPNFAIGAVLSMHFAKQA 119 (245)
T ss_dssp HHHHHHHHHHTTCEEEECCCC---CCHHHHHHHHHHHHTSTTCE-EEECSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEcCCC---CCHHHHHHHHHHHHhCCCCC-EEEECCccHHHHHHHHHHHHH
Confidence 456677778899999996432 4567899999999976 775 788999988877777776654
No 306
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=48.47 E-value=7.3 Score=33.63 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=18.7
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHH
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qa 96 (507)
|++|+++| |-|.||||+.--|++.
T Consensus 2 g~ii~l~G----~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITG----PAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEEC----STTSSHHHHHHHHHHH
T ss_pred CeEEEEEC----CCCCcHHHHHHHHhcc
Confidence 56777777 4699999998888653
No 307
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=48.36 E-value=35 Score=33.89 Aligned_cols=67 Identities=19% Similarity=0.096 Sum_probs=40.8
Q ss_pred hHHHHHHHHhccCCc-EEEEecCCCCCC-HHHH----HHHHHHHHHcCC----CeEEEccccc-cC------chh-hHHH
Q 010555 438 NLARHIANTKAYGAN-VVVAVNMFATDS-KAEL----NAVRNAAMAAGA----FDAVVCSHHA-HG------GKG-AFKE 499 (507)
Q Consensus 438 NL~~HIen~~~fGvp-vVVAiN~F~tDT-~aEi----~~v~~~~~~~G~----~~~~~s~~wa-~G------GeG-a~~L 499 (507)
....|++.++..|+| +||++|+-.-.. ++.+ +.+++++++.|. ..++.++.+. ++ ++| -.+|
T Consensus 106 qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~L 185 (397)
T 1d2e_A 106 QTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKL 185 (397)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHH
Confidence 345677778889999 689999976542 3322 345667777774 1255555543 11 235 4566
Q ss_pred HHhhh
Q 010555 500 PVRML 504 (507)
Q Consensus 500 A~~v~ 504 (507)
-+.+.
T Consensus 186 l~~l~ 190 (397)
T 1d2e_A 186 LDAVD 190 (397)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 308
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=48.27 E-value=15 Score=34.05 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|.++++.| |.|.||||++.-++..+
T Consensus 28 ~~G~i~~i~G----~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVS----PGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEc----CCCCCHHHHHHHHHHHH
Confidence 4689999998 67999999998888766
No 309
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=48.24 E-value=14 Score=35.11 Aligned_cols=59 Identities=20% Similarity=0.132 Sum_probs=36.3
Q ss_pred HHHhccCCcEEEEecCCCCCCHHHH-HHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 444 ANTKAYGANVVVAVNMFATDSKAEL-NAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 444 en~~~fGvpvVVAiN~F~tDT~aEi-~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
..+..+++|+|+++|+..-....++ ..+.++++..|++ ++.+. +.=|+|-.+|-+.+.+
T Consensus 101 ~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~~S--A~~g~gi~el~~~i~~ 160 (272)
T 3b1v_A 101 TQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVP-VVATS--ALKQTGVDQVVKKAAH 160 (272)
T ss_dssp HHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECB--TTTTBSHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCC-EEEEE--ccCCCCHHHHHHHHHH
Confidence 3445589999999998421110000 1245677778986 55444 4557888888776654
No 310
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=48.17 E-value=13 Score=38.03 Aligned_cols=40 Identities=30% Similarity=0.373 Sum_probs=29.8
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
+.|.+|+|+| |-|.|||||.-.|..-++ .- ...+..+=+|
T Consensus 165 ~~ggii~I~G----pnGSGKTTlL~allg~l~-~~-~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTG----PTGSGKSTTLYAGLQELN-SS-ERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEEC----STTSCHHHHHHHHHHHHC-CT-TSCEEEEESS
T ss_pred hcCCeEEEEC----CCCCCHHHHHHHHHhhcC-CC-CCEEEEeccc
Confidence 5688999999 559999999999888773 32 3346666555
No 311
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=48.09 E-value=23 Score=37.21 Aligned_cols=41 Identities=5% Similarity=0.131 Sum_probs=30.0
Q ss_pred HHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010555 441 RHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 441 ~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~ 481 (507)
++.+.++.+++|+++++|+-.-......+.+.++.+..|..
T Consensus 125 ~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~ 165 (528)
T 3tr5_A 125 KLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIH 165 (528)
T ss_dssp HHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCC
Confidence 45566778999999999997765544555566777777764
No 312
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=48.08 E-value=8.4 Score=33.25 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=38.1
Q ss_pred hhHHHHHHHHhcc---CCcEEEEecCCCCCCHHHH--HHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 437 VNLARHIANTKAY---GANVVVAVNMFATDSKAEL--NAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 437 ~NL~~HIen~~~f---GvpvVVAiN~F~tDT~aEi--~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.++.+.++.++.+ ++|+|+++|+..-..+.++ +...+++++.++. +..+. ++=|+|-.+|-+.+++
T Consensus 122 ~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~vS--A~~g~gv~~l~~~l~~ 192 (199)
T 3l0i_B 122 NNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETS--AKNATNVEQSFMTMAA 192 (199)
T ss_dssp HHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCC-BCCCC--C---HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHH
Confidence 3444555555554 8999999999765433322 3456788888886 44333 5567888887766654
No 313
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=47.85 E-value=10 Score=32.99 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.4
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~q 95 (507)
+.|.+++++| |.|.||||++.-|+-
T Consensus 18 ~~G~~~~i~G----~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYG----PYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEEC----STTSSHHHHHHHHHH
T ss_pred cCCEEEEEEC----CCCCCHHHHHHHHHH
Confidence 6799999998 679999999887765
No 314
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=47.45 E-value=57 Score=30.42 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEccccc
Q 010555 463 DSKAELNAVRNAAMAAGAFDAVVCSHHA 490 (507)
Q Consensus 463 DT~aEi~~v~~~~~~~G~~~~~~s~~wa 490 (507)
+++++++.|.++|++.|+. +++-+.|+
T Consensus 190 ~~~~~l~~i~~~~~~~~~~-li~De~~~ 216 (375)
T 2eh6_A 190 ASEDFLSKLQEICKEKDVL-LIIDEVQT 216 (375)
T ss_dssp CCHHHHHHHHHHHHHHTCE-EEEECTTT
T ss_pred CCHHHHHHHHHHHHHhCCE-EEEecccc
Confidence 7899999999999999996 77777776
No 315
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=47.34 E-value=9.4 Score=40.40 Aligned_cols=33 Identities=33% Similarity=0.507 Sum_probs=26.0
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
|-||.| |.|.|||||.+-+...|- +-|++..+|
T Consensus 207 ~~lI~G----PPGTGKT~ti~~~I~~l~-~~~~~ILv~ 239 (646)
T 4b3f_X 207 LAIIHG----PPGTGKTTTVVEIILQAV-KQGLKVLCC 239 (646)
T ss_dssp EEEEEC----CTTSCHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred ceEEEC----CCCCCHHHHHHHHHHHHH-hCCCeEEEE
Confidence 778877 799999999999888873 567665544
No 316
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=47.32 E-value=22 Score=34.48 Aligned_cols=80 Identities=16% Similarity=0.109 Sum_probs=50.4
Q ss_pred cceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHH
Q 010555 393 PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVR 472 (507)
Q Consensus 393 PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~ 472 (507)
-|.+=+|--+.+|| .|- .++-.+++.++.+-|. ..-++|++-.. |- |++|+...+
T Consensus 109 AdEIDmViNig~lk--~g~----------~~~v~~eI~~v~~a~~----------~~~lKVIlEt~-~L--t~eei~~a~ 163 (239)
T 3ngj_A 109 AEEVDMVINIGMVK--AKK----------YDDVEKDVKAVVDASG----------KALTKVIIECC-YL--TNEEKVEVC 163 (239)
T ss_dssp CSEEEEECCHHHHH--TTC----------HHHHHHHHHHHHHHHT----------TSEEEEECCGG-GS--CHHHHHHHH
T ss_pred CCEEEEEeehHHhc--ccc----------HHHHHHHHHHHHHHhc----------CCceEEEEecC-CC--CHHHHHHHH
Confidence 46677888888887 111 3334445555544432 12244444333 32 688999999
Q ss_pred HHHHHcCCCeEEEccccccCchhhH
Q 010555 473 NAAMAAGAFDAVVCSHHAHGGKGAF 497 (507)
Q Consensus 473 ~~~~~~G~~~~~~s~~wa~GGeGa~ 497 (507)
+.|.++|+..+=.|+.|..||.--.
T Consensus 164 ~ia~~aGADfVKTSTGf~~ggAt~~ 188 (239)
T 3ngj_A 164 KRCVAAGAEYVKTSTGFGTHGATPE 188 (239)
T ss_dssp HHHHHHTCSEEECCCSSSSCCCCHH
T ss_pred HHHHHHCcCEEECCCCCCCCCCCHH
Confidence 9999999975556668988876443
No 317
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=47.23 E-value=36 Score=33.77 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=39.7
Q ss_pred HHHHHHHHhccCC-cEEEEecCCCCCCHHH----HHHHHHHHHH---cCCCeEEEccccccCchhhHHHHHhhh
Q 010555 439 LARHIANTKAYGA-NVVVAVNMFATDSKAE----LNAVRNAAMA---AGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 439 L~~HIen~~~fGv-pvVVAiN~F~tDT~aE----i~~v~~~~~~---~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
...|+..++.+|+ |+||++|+-.-.++++ ++.+++++++ .+++ ++.++.+. |+|-.+|-+.+.
T Consensus 125 t~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-~i~vSA~~--g~gi~~L~~~l~ 195 (410)
T 1kk1_A 125 TREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAP-IIPISALH--GANIDVLVKAIE 195 (410)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC-EEECBTTT--TBSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCe-EEEeeCCC--CCCHHHHHHHHH
Confidence 3456666667777 6899999987655544 3455666554 3454 55555543 577777766654
No 318
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=47.09 E-value=8.5 Score=33.98 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=21.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qa 96 (507)
+.|.++++.| |.|.||||+..-|+-.
T Consensus 22 ~~G~~~~i~G----~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFG----EFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEEC----CTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEEC----CCCCcHHHHHHHHHHH
Confidence 5699999998 6799999999877654
No 319
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=46.73 E-value=16 Score=31.95 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=32.6
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCC-eEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAF-DAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~--aEi~~v~~~~~~~G~~-~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++.|++|++|+..-... .+++.+.+++++.+.. .++ ..-+.=|+|-.+|-+.+.
T Consensus 153 ~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~--~~Sa~~g~gi~~l~~~l~ 209 (221)
T 2wsm_A 153 FRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKII--EMDLKTGKGFEEWIDFLR 209 (221)
T ss_dssp HHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEE--ECBTTTTBTHHHHHHHHH
T ss_pred hhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEE--EeecCCCCCHHHHHHHHH
Confidence 46899999999754322 2466677777665422 233 333455777777766553
No 320
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=46.71 E-value=67 Score=26.97 Aligned_cols=52 Identities=12% Similarity=0.060 Sum_probs=30.4
Q ss_pred CCcEEEEecCCCCCCH---HHHHHHHHH---HHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 450 GANVVVAVNMFATDSK---AELNAVRNA---AMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 450 GvpvVVAiN~F~tDT~---aEi~~v~~~---~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++|+||++|+..-..+ +|+...... +++.++. ++.+. ++=|+|-.+|-+.++
T Consensus 127 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gv~~l~~~l~ 184 (199)
T 4bas_A 127 RVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFV-IFASN--GLKGTGVHEGFSWLQ 184 (199)
T ss_dssp BCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEE-EEECB--TTTTBTHHHHHHHHH
T ss_pred CCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeE-EEEee--CCCccCHHHHHHHHH
Confidence 8999999999765544 444332221 2334553 44444 455777777665554
No 321
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=46.34 E-value=7.4 Score=32.07 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=23.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
...+-|+++| |.|.||||++..+++.+.
T Consensus 41 ~~~~~~ll~G----~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIG----EPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEEC----CTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEEC----CCCCCHHHHHHHHHHHHH
Confidence 3456788887 569999999999999984
No 322
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=46.30 E-value=35 Score=28.25 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=35.5
Q ss_pred HHHHhcc--CCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 443 IANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 443 Ien~~~f--GvpvVVAiN~F~tDT~aE--------------i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++.++++ ++|+|+++|+..-..+.+ .+...+++++.|...+..++ +.=|+|-.+|-+.++
T Consensus 100 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~g~gi~~l~~~l~ 175 (186)
T 1mh1_A 100 YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS--ALTQRGLKTVFDEAI 175 (186)
T ss_dssp HHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC--TTTCTTHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec--CCCccCHHHHHHHHH
Confidence 3444443 899999999964322211 23445677888873355444 344677777665554
No 323
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=46.29 E-value=66 Score=29.12 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=43.6
Q ss_pred ccCHHHHHHHhhhHHHHHHHHhccCCcEEEEe-----cC--CC--CCCHHHH-------HHHHHHHHHcCCCeEEEcccc
Q 010555 426 NENVALVEAGCVNLARHIANTKAYGANVVVAV-----NM--FA--TDSKAEL-------NAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 426 ~enl~al~~G~~NL~~HIen~~~fGvpvVVAi-----N~--F~--tDT~aEi-------~~v~~~~~~~G~~~~~~s~~w 489 (507)
.++.+.-++.+..+++.|+..+.+|.+.||.. .. |. .++++.+ ..+.+.|++.|+. +++-++.
T Consensus 77 ~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~ 155 (290)
T 2qul_A 77 SPDKSVRDAGTEYVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGII-YALEVVN 155 (290)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTCE-EEEECCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeCc
Confidence 45556678889999999999999999999852 22 32 2444443 3344566778996 6676664
No 324
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=46.18 E-value=9 Score=34.79 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=24.4
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
+.|++|.+.|. -|.||||+.--|+ .++.+ +...+||
T Consensus 18 ~~g~~i~i~G~----~GsGKSTl~~~L~-----~~~g~-v~~~~~~ 53 (230)
T 2vp4_A 18 TQPFTVLIEGN----IGSGKTTYLNHFE-----KYKND-ICLLTEP 53 (230)
T ss_dssp CCCEEEEEECS----TTSCHHHHHHTTG-----GGTTT-EEEECCT
T ss_pred CCceEEEEECC----CCCCHHHHHHHHH-----hccCC-eEEEecC
Confidence 56999999996 4999999664442 22322 4555666
No 325
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=45.99 E-value=45 Score=30.11 Aligned_cols=36 Identities=22% Similarity=0.125 Sum_probs=21.2
Q ss_pred HHHhccCCcEE-EEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010555 444 ANTKAYGANVV-VAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 444 en~~~fGvpvV-VAiN~F~tDT~aEi~~v~~~~~~~G~~ 481 (507)
+.+++.|++.+ |.+|++...+.. +.+.+.++..|.+
T Consensus 155 ~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~~~~~~~~ 191 (263)
T 1hyq_A 155 IVAERLGTKVLGVVVNRITTLGIE--MAKNEIEAILEAK 191 (263)
T ss_dssp HHHHHHTCEEEEEEEEEECTTTHH--HHHHHHHHHTTSC
T ss_pred HHHHhcCCCeeEEEEccCCccccc--chHHHHHHHhCCC
Confidence 33333465544 788988876654 4455555566664
No 326
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=45.91 E-value=16 Score=36.18 Aligned_cols=37 Identities=32% Similarity=0.272 Sum_probs=25.7
Q ss_pred CCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCccccc
Q 010555 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNL 140 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNL 140 (507)
=|-|.||||++--|..-|. . .| ++|...+++||++.+
T Consensus 99 GpsGSGKSTl~~~L~~ll~-~----------~~-------------~~~~v~~i~~D~f~~ 135 (321)
T 3tqc_A 99 GSVAVGKSTTSRVLKALLS-R----------WP-------------DHPNVEVITTDGFLY 135 (321)
T ss_dssp CCTTSSHHHHHHHHHHHHT-T----------ST-------------TCCCEEEEEGGGGBC
T ss_pred CCCCCCHHHHHHHHHHHhc-c----------cC-------------CCCeEEEEeeccccc
Confidence 3679999999977765552 1 12 135578899998765
No 327
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=45.88 E-value=9.3 Score=33.53 Aligned_cols=63 Identities=10% Similarity=-0.089 Sum_probs=37.6
Q ss_pred hHHHHHHHHhcc--CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhh
Q 010555 438 NLARHIANTKAY--GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 438 NL~~HIen~~~f--GvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
++...++.+.++ ++|+|+++|+..-......+...+++++.++. +..++ ++=|+|-.+|-+.+
T Consensus 105 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l 169 (221)
T 3gj0_A 105 NVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQ-YYDIS--AKSNYNFEKPFLWL 169 (221)
T ss_dssp THHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCE-EEECB--GGGTBTTTHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHH
Confidence 444444444443 89999999997644333333455677888885 55444 34466665554433
No 328
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=45.85 E-value=15 Score=40.57 Aligned_cols=36 Identities=22% Similarity=0.510 Sum_probs=26.1
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~ 108 (507)
+.+.+|.| |.|.|||||...+...|-..-+++..+|
T Consensus 375 ~~~~lI~G----ppGTGKT~~i~~~i~~l~~~~~~~ILv~ 410 (802)
T 2xzl_A 375 RPLSLIQG----PPGTGKTVTSATIVYHLSKIHKDRILVC 410 (802)
T ss_dssp CSEEEEEC----STTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCEEEEC----CCCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 55888988 8999999999998877732235444433
No 329
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=45.64 E-value=7.6 Score=33.57 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=18.8
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+|.+|| |.|.||||++--|++.|
T Consensus 4 ~i~i~G----~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDG----PSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEEC----STTSSHHHHHHHHHHHH
T ss_pred EEEEEC----CCCCCHHHHHHHHHHhc
Confidence 677777 46999999998887766
No 330
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=45.53 E-value=7.1 Score=33.93 Aligned_cols=22 Identities=36% Similarity=0.344 Sum_probs=18.0
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVG 92 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIG 92 (507)
+.|.++.+.| |-|.||||+.--
T Consensus 7 ~~gei~~l~G----~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIG----SSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEEC----CTTSCHHHHHHH
T ss_pred CCCEEEEEEC----CCCCCHHHHHHH
Confidence 4688999988 569999998764
No 331
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=45.43 E-value=21 Score=31.56 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~q 95 (507)
+.|.++.+.| |-|.||||+..-|+.
T Consensus 28 ~~G~~~~l~G----pnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTG----GTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEEC----CTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEe----CCCCCHHHHHHHHHH
Confidence 5699999988 569999999987763
No 332
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=45.37 E-value=31 Score=29.30 Aligned_cols=53 Identities=9% Similarity=-0.017 Sum_probs=34.4
Q ss_pred CCcEEEEecCCCCC----CHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 450 GANVVVAVNMFATD----SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 450 GvpvVVAiN~F~tD----T~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++|+|+++|+-.-. .....+.+.+++++.|+..+..+. ++=|+|-.+|-+.++
T Consensus 127 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~l~~~l~ 183 (194)
T 3reg_A 127 TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEAS--SVAKIGLNEVFEKSV 183 (194)
T ss_dssp TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECB--TTTTBSHHHHHHHHH
T ss_pred CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEee--cCCCCCHHHHHHHHH
Confidence 79999999986532 112245567788888886344333 455777777666554
No 333
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=45.25 E-value=17 Score=36.65 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=26.8
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+.|.+|.+.| |-|.|||||.-=|+--+. .-+.+..
T Consensus 155 ~~g~vi~lvG----~nGsGKTTll~~Lag~l~-~~~G~V~ 189 (359)
T 2og2_A 155 RKPAVIMIVG----VNGGGKTTSLGKLAHRLK-NEGTKVL 189 (359)
T ss_dssp SSSEEEEEEC----CTTSCHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCCeEEEEEc----CCCChHHHHHHHHHhhcc-ccCCEEE
Confidence 4588999998 679999999988887773 4455544
No 334
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=45.17 E-value=9.9 Score=36.03 Aligned_cols=48 Identities=8% Similarity=-0.022 Sum_probs=31.5
Q ss_pred cccCceeeech-hhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 47 LYGKYKAKVLL-SVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 47 ~YG~~kAKi~l-~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.+|+.+..-.+ +.+.+......++.|+++| |.|.||||++.-+++.+.
T Consensus 22 l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G----~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 22 IPFREDILRDAAIAIRYFVKNEVKFSNLFLG----LTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCCCCEEEEEE----CTTSSHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCcEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 46665443333 2333322234467899998 679999999999998884
No 335
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=45.11 E-value=9.4 Score=38.19 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=21.4
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.++|+|+|. .|.||||++.-|++.++
T Consensus 5 ~~~i~i~Gp----tGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGP----TAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECC----TTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECC----CCCCHHHHHHHHHHHcC
Confidence 368888884 59999999999988773
No 336
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=44.66 E-value=59 Score=27.44 Aligned_cols=53 Identities=9% Similarity=-0.027 Sum_probs=31.5
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aEi~~v~~~~~-----~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.++|+||++|+..-..+.+.+.+.+++. +.+.. +..++ ++=|+|-.+|-+.+.
T Consensus 125 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~ 182 (190)
T 2h57_A 125 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWH-ICASD--AIKGEGLQEGVDWLQ 182 (190)
T ss_dssp SCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEE-EEECB--TTTTBTHHHHHHHHH
T ss_pred CCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceE-EEEcc--CCCCcCHHHHHHHHH
Confidence 5899999999976544333444555543 12342 33333 555777777766554
No 337
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=44.62 E-value=71 Score=28.50 Aligned_cols=56 Identities=7% Similarity=0.080 Sum_probs=38.2
Q ss_pred HHHHhhhHHHHHHHHhccCCcEEEEe-cCCCCC--CHH-------HHHHHHHHHHHcCCCeEEEccc
Q 010555 432 VEAGCVNLARHIANTKAYGANVVVAV-NMFATD--SKA-------ELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 432 l~~G~~NL~~HIen~~~fGvpvVVAi-N~F~tD--T~a-------Ei~~v~~~~~~~G~~~~~~s~~ 488 (507)
-++....+++.|+..+.+|.+.||.. ..++.+ +++ -+..+.+.|++.|+. +++-++
T Consensus 80 ~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~~E~~ 145 (260)
T 1k77_A 80 EHEAHADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRAVFIDNIRYAADRFAPHGKR-ILVEAL 145 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECCCCBCCTTSCHHHHHHHHHHHHHHHHHHHGGGTCE-EEECCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 45667889999999999999999873 333322 222 234455666678996 777665
No 338
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=44.55 E-value=12 Score=32.14 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=17.5
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHH
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~q 95 (507)
.++|.+||. .|.||||++--|++
T Consensus 8 ~~~I~i~G~----~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGN----IGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEEC----TTSCHHHHHHHHHH
T ss_pred ceEEEEECC----CCCCHHHHHHHHHH
Confidence 467888884 69999998765543
No 339
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=44.52 E-value=16 Score=38.63 Aligned_cols=33 Identities=33% Similarity=0.390 Sum_probs=27.1
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a 105 (507)
.+.+|++||. -|.||||++.-|.+.|+ ..|++.
T Consensus 371 ~~~~I~l~G~----~GsGKSTia~~La~~L~-~~G~~~ 403 (546)
T 2gks_A 371 QGFCVWLTGL----PCAGKSTIAEILATMLQ-ARGRKV 403 (546)
T ss_dssp CCEEEEEECS----TTSSHHHHHHHHHHHHH-HTTCCE
T ss_pred cceEEEccCC----CCCCHHHHHHHHHHHhh-hcCCeE
Confidence 4788999985 69999999999999995 556554
No 340
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=44.25 E-value=8.2 Score=32.39 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=18.7
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.|++||. -|.||||++--|++.|
T Consensus 2 ~I~l~G~----~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGF----MCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESC----TTSCHHHHHHHHHHHH
T ss_pred eEEEECC----CCCCHHHHHHHHHHHh
Confidence 4777775 6999999998888776
No 341
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1
Probab=44.12 E-value=27 Score=33.40 Aligned_cols=73 Identities=16% Similarity=0.099 Sum_probs=49.4
Q ss_pred cceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHH
Q 010555 393 PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVR 472 (507)
Q Consensus 393 PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~ 472 (507)
-|.+-+|.-+.+||-. - .++-.+++.++.+-| +..++||++..-.. |++|+....
T Consensus 80 AdEID~Vinig~~~~g--~----------~~~v~~ei~~v~~a~----------~~~~lKvIlEt~~L---t~eei~~a~ 134 (226)
T 1vcv_A 80 ADEIDVVAPIGLVKSR--R----------WAEVRRDLISVVGAA----------GGRVVKVITEEPYL---RDEERYTLY 134 (226)
T ss_dssp CSEEEEECCHHHHHTT--C----------HHHHHHHHHHHHHHT----------TTSEEEEECCGGGC---CHHHHHHHH
T ss_pred CCEEEEecchhhhcCC--C----------HHHHHHHHHHHHHHH----------cCCCceEEEeccCC---CHHHHHHHH
Confidence 5778888888888732 1 233344444444433 23567777655544 589999999
Q ss_pred HHHHHcCCCeEEEccccc
Q 010555 473 NAAMAAGAFDAVVCSHHA 490 (507)
Q Consensus 473 ~~~~~~G~~~~~~s~~wa 490 (507)
+.|.++|+..+-.|+.|.
T Consensus 135 ~ia~eaGADfVKTSTGf~ 152 (226)
T 1vcv_A 135 DIIAEAGAHFIKSSTGFA 152 (226)
T ss_dssp HHHHHHTCSEEECCCSCC
T ss_pred HHHHHcCCCEEEeCCCCC
Confidence 999999998666677898
No 342
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=43.89 E-value=1.4e+02 Score=31.55 Aligned_cols=159 Identities=18% Similarity=0.188 Sum_probs=85.8
Q ss_pred eeecCceeEEeccCcccccccCchHHHHHHHHHhcCCCCeEEe---e--cccccccccccccc----cccccCCCCcceE
Q 010555 326 QTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVT---E--AGFGADIGAEKFMN----IKCRYSGLTPQCA 396 (507)
Q Consensus 326 QTlEgtPa~VHgGPFANIAhG~nSviAtk~ALklag~~dyVVT---E--AGFGaDlGaEKF~d----IKCr~sgl~Pdav 396 (507)
+.+++.=.+||| +.||.+-.-.-+......+-..+-| | +=|| |-+|..+ +.-|+ +|+++
T Consensus 80 ~gI~d~~~lvHG------p~GC~~~~~~~~~r~f~e~~~~~sT~l~E~d~VfG---G~~kL~~aI~~~~~~~---~P~~I 147 (523)
T 3u7q_B 80 LGFEKTMPYVHG------SQGCVAYFRSYFNRHFREPVSCVSDSMTEDAAVFG---GQQNMKDGLQNCKATY---KPDMI 147 (523)
T ss_dssp HTBTTEEEEEES------CHHHHHHHHHHHHHHHSSCCCCEECCCCTTHHHHC---SHHHHHHHHHHHHHHH---CCSEE
T ss_pred hccCCcEEEEec------CchHHHHHHHHHhcccCCCcceeeeecchhheecC---cHHHHHHHHHHHHHhh---CCCEE
Confidence 457888899999 6799987654433333311111122 2 3355 2344432 22333 79999
Q ss_pred EEEeeeh-------------HHHhcCCCCCccCCCCCc----hhccccCHHHHHHHhhhHHHHHHHHh-----ccCCcEE
Q 010555 397 VIVATIR-------------ALKMHGGGPQVVAGKPLD----HAYLNENVALVEAGCVNLARHIANTK-----AYGANVV 454 (507)
Q Consensus 397 VlVaTvR-------------ALK~HGG~~~~~~g~pL~----~~~~~enl~al~~G~~NL~~HIen~~-----~fGvpvV 454 (507)
+|++|.- .++-.++.|. +.|++ +.|.....+.-...+.-|.+|+-.-+ .-.-+-|
T Consensus 148 ~V~tTC~~e~IGdDi~~v~~~~~~~~~ip~---~~~Vv~v~tpgf~Gs~~~G~~~a~~alv~~l~~~~~~~~~~~~~~~V 224 (523)
T 3u7q_B 148 AVSTTCMAEVIGDDLNAFINNSKKEGFIPD---EFPVPFAHTPSFVGSHVTGWDNMFEGIARYFTLKSMDDKVVGSNKKI 224 (523)
T ss_dssp EEEECHHHHHHTCCHHHHHHHHHHTTSSCT---TSCCCBCCCCTTSSCHHHHHHHHHHHHHHHHHGGGGGGCCTTTTCCE
T ss_pred EEeCCcHHHHhcCCHHHHHHHHHHhcCCCC---CceEEEeeCCCCCCChhHHHHHHHHHHHHHhcccccccccCCCCCeE
Confidence 9999953 3333333321 11222 23333334444455555555554211 1112334
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc-c--------------ccccCchhhHHHHHh
Q 010555 455 VAVNMFATDSKAELNAVRNAAMAAGAFDAVVC-S--------------HHAHGGKGAFKEPVR 502 (507)
Q Consensus 455 VAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s-~--------------~wa~GGeGa~~LA~~ 502 (507)
-.|--|.. +..+++.|+++.++.|+. +... + .| .||..-.||.+.
T Consensus 225 NIig~~~~-~~gD~~elkrlL~~~Gi~-v~~lpd~s~~ld~p~~~~~~~~-~ggtt~~ei~~~ 284 (523)
T 3u7q_B 225 NIVPGFET-YLGNFRVIKRMLSEMGVG-YSLLSDPEEVLDTPADGQFRMY-AGGTTQEEMKDA 284 (523)
T ss_dssp EEECCSCC-CHHHHHHHHHHHHHTTCC-EEESSCCTTTTSCCCSSCCCSC-CCCBCHHHHHHG
T ss_pred EEECCCCC-ChhHHHHHHHHHHHcCCe-EEEecCchhccccccccccccc-CCCCCHHHHHHh
Confidence 44555532 488999999999999997 4432 1 35 477777777653
No 343
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=43.34 E-value=11 Score=34.25 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=19.3
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~q 95 (507)
+.|+++.+.| |-|.||||+.--|+.
T Consensus 21 ~~G~~~~lvG----psGsGKSTLl~~L~g 45 (218)
T 1z6g_A 21 NNIYPLVICG----PSGVGKGTLIKKLLN 45 (218)
T ss_dssp -CCCCEEEEC----STTSSHHHHHHHHHH
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHh
Confidence 4688888887 789999998765543
No 344
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=43.32 E-value=26 Score=32.64 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=23.7
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..+..|+++| |.|.||||+..-+++.+.
T Consensus 43 ~~~~~vli~G----~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYG----LTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEE----CTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 4577899998 579999999999988884
No 345
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=43.27 E-value=6.6 Score=32.61 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
...+-|+++| |.|.||||++..+++.+.
T Consensus 41 ~~~~~vll~G----~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLG----DPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEES----CGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEEC----CCCCCHHHHHHHHHHHHH
Confidence 4466788888 569999999999999984
No 346
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=43.14 E-value=16 Score=37.70 Aligned_cols=69 Identities=20% Similarity=0.215 Sum_probs=42.7
Q ss_pred CCCCcccccccCceeeech-hhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHH----HHhhhcCCcEEEEecCCC
Q 010555 39 NLKPNHYDLYGKYKAKVLL-SVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQ----ALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 39 gl~~~~le~YG~~kAKi~l-~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~q----aL~~~lgk~a~~~lRePS 113 (507)
++++. -..||+..-+-.+ +.|... ..++.++|.|+|+ .|-||||++.-+.. -...+......+++++.+
T Consensus 123 ~~p~~-~~~~GR~~~~~~l~~~L~~~-~~~~~~vv~I~G~----gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~ 196 (549)
T 2a5y_B 123 NVPKQ-MTCYIREYHVDRVIKKLDEM-CDLDSFFLFLHGR----AGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTA 196 (549)
T ss_dssp TCBCC-CCSCCCHHHHHHHHHHHHHH-TTSSSEEEEEECS----TTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCS
T ss_pred CCCCC-CccCCchHHHHHHHHHHhcc-cCCCceEEEEEcC----CCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCC
Confidence 44443 3337986544333 223221 1234689999997 79999999887774 343456666777887754
No 347
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=43.14 E-value=27 Score=29.31 Aligned_cols=53 Identities=21% Similarity=0.154 Sum_probs=30.0
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aEi~~v~~~~~-----~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.++|+++++|+-.-..+.+.+.+.+... ..+.. +..++ ++-|+|-.+|-+.+.
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~ 175 (186)
T 1ksh_A 118 AGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWR-IQGCS--AVTGEDLLPGIDWLL 175 (186)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE-EEECC--TTTCTTHHHHHHHHH
T ss_pred CCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceE-EEEee--CCCCCCHHHHHHHHH
Confidence 5899999999976544333333333322 22332 33333 455777777666554
No 348
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=43.11 E-value=4.7 Score=42.47 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=28.7
Q ss_pred cccCceeeechhhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 47 LYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 47 ~YG~~kAKi~l~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.||...++=.++.. + ..|+-++++| |-|.||||++..|++.+.
T Consensus 43 i~G~~~~l~~l~~~--i---~~g~~vll~G----p~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 43 VIGQEHAVEVIKTA--A---NQKRHVLLIG----EPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCSCHHHHHHHHHH--H---HTTCCEEEEC----CTTSSHHHHHHHHHHTSC
T ss_pred EECchhhHhhcccc--c---cCCCEEEEEe----CCCCCHHHHHHHHhccCC
Confidence 46765554222211 2 2356788887 569999999999988773
No 349
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=43.02 E-value=7.7 Score=43.56 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=19.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVG 92 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIG 92 (507)
|.+|+|+|||.+ |+||||++-.
T Consensus 34 P~~~l~viTGvS----GSGKSSLafd 55 (842)
T 2vf7_A 34 PRDALVVFTGVS----GSGKSSLAFG 55 (842)
T ss_dssp ESSSEEEEESST----TSSHHHHHTT
T ss_pred cCCCEEEEECCC----CCCHHHHHHH
Confidence 789999999974 9999999876
No 350
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=42.86 E-value=60 Score=27.53 Aligned_cols=53 Identities=9% Similarity=-0.072 Sum_probs=33.4
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHH-HcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDS-KAELNAVRNAAM-AAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT-~aEi~~v~~~~~-~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.++|+||++|+..-.. +...+.+.++++ ..++. ++.+. ++-|+|-.+|-+.++
T Consensus 116 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~ 170 (207)
T 1vg8_A 116 ENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP-YFETS--AKEAINVEQAFQTIA 170 (207)
T ss_dssp GGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCC-EEECB--TTTTBSHHHHHHHHH
T ss_pred CCCcEEEEEECCCCcccccCHHHHHHHHHhcCCce-EEEEe--CCCCCCHHHHHHHHH
Confidence 5899999999975431 222345667776 45665 55444 455777777665554
No 351
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=42.78 E-value=21 Score=35.26 Aligned_cols=104 Identities=21% Similarity=0.233 Sum_probs=68.5
Q ss_pred CeEEeecccccccccccccccccccCCCCcceEE---EEeeehHHHhcCCCCCccCCCCCchhccc------cCHHHH-H
Q 010555 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAV---IVATIRALKMHGGGPQVVAGKPLDHAYLN------ENVALV-E 433 (507)
Q Consensus 364 dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavV---lVaTvRALK~HGG~~~~~~g~pL~~~~~~------enl~al-~ 433 (507)
||+||-.-|..|. .++|++ +||..|+.--.+. -+++.+.+++.-.. +|-.+|+++.+ .|.+++ +
T Consensus 175 df~iTQ~ffD~~~-~~~f~~-~~r~~Gi~vPIi~GImPi~s~~~~~~~~~~----~Gv~iP~~l~~~l~~~~~d~~~~~~ 248 (310)
T 3apt_A 175 DFAITQLFFNNAH-YFGFLE-RARRAGIGIPILPGIMPVTSYRQLRRFTEV----CGASIPGPLLAKLERHQDDPKAVLE 248 (310)
T ss_dssp SEEEECCCSCHHH-HHHHHH-HHHHTTCCSCEECEECCCCCTTHHHHHHHT----SCCCCCHHHHHHHHHSTTCHHHHHH
T ss_pred CEEEecccCCHHH-HHHHHH-HHHHcCCCCeEEEEecccCCHHHHHHHHHc----CCCCCCHHHHHHHHhccCCHHHHHH
Confidence 8999999999886 788888 8999998521111 14567777665322 34556665322 244444 5
Q ss_pred HHhhhHHHHHHHHhccCCcEE--EEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010555 434 AGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 434 ~G~~NL~~HIen~~~fGvpvV--VAiN~F~tDT~aEi~~v~~~~~~~G~~ 481 (507)
.|.+-....++.+...|+|=| -.+|+. +.+.++++..|..
T Consensus 249 ~gi~~a~e~~~~L~~~gv~GiH~yt~n~~--------~~~~~I~~~l~~~ 290 (310)
T 3apt_A 249 IGVEHAVRQVAELLEAGVEGVHFYTLNKS--------PATRMVLERLGLR 290 (310)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEECCSSC--------CHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEeCCCCH--------HHHHHHHHHcCCC
Confidence 688877788999998898833 334443 3566677777773
No 352
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=42.75 E-value=13 Score=30.19 Aligned_cols=55 Identities=11% Similarity=0.044 Sum_probs=35.4
Q ss_pred HhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 446 TKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 446 ~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
+++.++|+++++|+-.-..+ -+.+.+++ +.|...+..++ ++-|+|-.+|-+.+++
T Consensus 104 ~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~-~~~~~~~~~~S--a~~~~gv~~l~~~l~~ 158 (161)
T 2dyk_A 104 LRRKGKPVILVATKVDDPKH--ELYLGPLY-GLGFGDPIPTS--SEHARGLEELLEAIWE 158 (161)
T ss_dssp HHHHTCCEEEEEECCCSGGG--GGGCGGGG-GGSSCSCEECB--TTTTBSHHHHHHHHHH
T ss_pred HHhcCCCEEEEEECcccccc--hHhHHHHH-hCCCCCeEEEe--cccCCChHHHHHHHHH
Confidence 33478999999999654332 23445555 56773244444 5667888888776654
No 353
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=42.54 E-value=31 Score=28.74 Aligned_cols=59 Identities=15% Similarity=0.026 Sum_probs=37.5
Q ss_pred HHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCe------EEEccccccCchhhHHHHHhhh
Q 010555 443 IANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFD------AVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 443 Ien~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~------~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.+.++..++|+++++|+-.-..+. -+.+.+++++.|... +..++ ++-|+|-.+|-+.++
T Consensus 115 ~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~v~~l~~~l~ 179 (190)
T 2cxx_A 115 YQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDKVFIPIS--AKFGDNIERLKNRIF 179 (190)
T ss_dssp HHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHHHEEECC--TTTCTTHHHHHHHHH
T ss_pred HHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCCcEEEEe--cCCCCCHHHHHHHHH
Confidence 344556899999999997654433 335667777788741 23333 455777777665554
No 354
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=42.31 E-value=15 Score=35.45 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=23.3
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.+.+|.|+| |.|.||||++--|...|.
T Consensus 29 ~~~~ii~I~G----~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSG----PQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEEC----CTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHhh
Confidence 4567888887 679999999999988884
No 355
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=42.19 E-value=66 Score=26.85 Aligned_cols=107 Identities=11% Similarity=0.100 Sum_probs=56.3
Q ss_pred chHHHHHHHHHhcCCCCeEEeeccccccc---ccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhc
Q 010555 348 SSIVADKIALKLVGPGGFVVTEAGFGADI---GAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAY 424 (507)
Q Consensus 348 nSviAtk~ALklag~~dyVVTEAGFGaDl---GaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~ 424 (507)
.+.++.++.-+-. ++.|.-.|++-+- +.+++-.. ....+||.|||-.-.--+.
T Consensus 25 ~~~l~~~l~~~~~---~~~v~n~g~~G~~~~~~~~~~~~~---~~~~~pd~vvi~~G~ND~~------------------ 80 (185)
T 3hp4_A 25 VKLLQDKYDAEQS---DIVLINASISGETSGGALRRLDAL---LEQYEPTHVLIELGANDGL------------------ 80 (185)
T ss_dssp HHHHHHHHHHTTC---CEEEEECCCTTCCHHHHHHHHHHH---HHHHCCSEEEEECCHHHHH------------------
T ss_pred HHHHHHHHHhcCC---cEEEEECCcCCccHHHHHHHHHHH---HhhcCCCEEEEEeecccCC------------------
Confidence 4555555544422 6777777765442 22333221 1124799888764322221
Q ss_pred cccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCC----CCCHHH-HHHHHHHHHHcCCC
Q 010555 425 LNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFA----TDSKAE-LNAVRNAAMAAGAF 481 (507)
Q Consensus 425 ~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~----tDT~aE-i~~v~~~~~~~G~~ 481 (507)
...+++..+ .||++-|+.+++.+.++|++--..+ .+..++ -+.++++|++.|+.
T Consensus 81 ~~~~~~~~~---~~~~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~ 139 (185)
T 3hp4_A 81 RGFPVKKMQ---TNLTALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAH 139 (185)
T ss_dssp TTCCHHHHH---HHHHHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCE
T ss_pred CCcCHHHHH---HHHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCE
Confidence 112233333 3677778888888877765431122 222223 35668889998885
No 356
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=41.74 E-value=24 Score=34.48 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 66 ~~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.+.|.+|.+.| |-|.||||++--|+.-+
T Consensus 87 ~~~g~ivgI~G----~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAG----SVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEEC----CTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEEC----CCCchHHHHHHHHHhhc
Confidence 36788998888 56999999998887666
No 357
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=41.45 E-value=8.4 Score=35.39 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=20.7
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.+|.+|| |.|.||||++--|++.|+
T Consensus 23 ~iI~I~G----~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSG----GTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEEC----STTSSHHHHHHHHHHHTT
T ss_pred EEEEEEC----CCCCCHHHHHHHHHHHhh
Confidence 4678887 579999999998888774
No 358
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=41.36 E-value=31 Score=30.46 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=12.0
Q ss_pred HHHHhccCCcE-EEEecCCCCCCH
Q 010555 443 IANTKAYGANV-VVAVNMFATDSK 465 (507)
Q Consensus 443 Ien~~~fGvpv-VVAiN~F~tDT~ 465 (507)
++.+++.|+++ -|.+|++...+.
T Consensus 155 ~~~l~~~~~~~~~vv~N~~~~~~~ 178 (237)
T 1g3q_A 155 GIVLKKAGLAILGFVLNRYGRSDR 178 (237)
T ss_dssp HHHHHHTTCEEEEEEEEEETSCTT
T ss_pred HHHHHhCCCceEEEEEecCCcccc
Confidence 33444445543 366777765443
No 359
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=41.31 E-value=1.4e+02 Score=27.19 Aligned_cols=58 Identities=22% Similarity=0.153 Sum_probs=40.6
Q ss_pred HHHHHhhhHHHHHHHHhccCCcEEEEe-------cCCCC-------C-CHHH-------HHHHHHHHHHcCCCeEEEccc
Q 010555 431 LVEAGCVNLARHIANTKAYGANVVVAV-------NMFAT-------D-SKAE-------LNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 431 al~~G~~NL~~HIen~~~fGvpvVVAi-------N~F~t-------D-T~aE-------i~~v~~~~~~~G~~~~~~s~~ 488 (507)
..++.+..+++.|+.++.+|.+.||.. -.+.. . +++. +..+.+.|++.|+. +++-+|
T Consensus 84 ~~~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~~ 162 (301)
T 3cny_A 84 GIEKASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGLK-VAYHHH 162 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTCE-EEEECC
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCcHHHHHHHHHHHHHHHHHHHHcCCE-EEEecC
Confidence 456778899999999999999998875 12211 1 4443 34455667788996 777777
Q ss_pred c
Q 010555 489 H 489 (507)
Q Consensus 489 w 489 (507)
+
T Consensus 163 ~ 163 (301)
T 3cny_A 163 M 163 (301)
T ss_dssp T
T ss_pred C
Confidence 5
No 360
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=41.25 E-value=15 Score=35.52 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=26.0
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a 105 (507)
++-|+++| |.|.|||+++.+++..+...-|.++
T Consensus 152 ~~~lll~G----~~GtGKT~La~aia~~~~~~~g~~v 184 (308)
T 2qgz_A 152 QKGLYLYG----DMGIGKSYLLAAMAHELSEKKGVST 184 (308)
T ss_dssp CCEEEEEC----STTSSHHHHHHHHHHHHHHHSCCCE
T ss_pred CceEEEEC----CCCCCHHHHHHHHHHHHHHhcCCcE
Confidence 56788887 6799999999999999931556654
No 361
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=41.14 E-value=33 Score=31.94 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=23.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|.++++.| |-|.||||+..-|+-.+
T Consensus 33 ~~G~~~~i~G----~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTS----GSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEE----STTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEe----CCCCCHHHHHHHHHHHH
Confidence 5799999998 56999999998887666
No 362
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=41.06 E-value=11 Score=31.49 Aligned_cols=60 Identities=18% Similarity=0.097 Sum_probs=35.9
Q ss_pred HHHHhccCCcEEEEecCCCCCCHHHH-HHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 443 IANTKAYGANVVVAVNMFATDSKAEL-NAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 443 Ien~~~fGvpvVVAiN~F~tDT~aEi-~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
++.+++.++|+|++.|+-.-..+.++ ....+++++.|.. +..++ ++=|+|-.+|-+.+..
T Consensus 101 ~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--A~~~~~v~~l~~~l~~ 161 (165)
T 2wji_A 101 TLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPLS--AAKKMGIEELKKAISI 161 (165)
T ss_dssp HHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECB--GGGTBSHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCC-EEEEE--cCCCCCHHHHHHHHHH
Confidence 34455579999999998532111111 0145677777876 54444 4567887777666543
No 363
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=40.86 E-value=19 Score=33.32 Aligned_cols=65 Identities=22% Similarity=0.219 Sum_probs=39.8
Q ss_pred CCCHHHHHHHcCCCCcccccccCceeeechh-hhhhh-----------cCCCCCcEEEEeccCCCCCCCCcchhHhhHHH
Q 010555 28 PLHISEIAQELNLKPNHYDLYGKYKAKVLLS-VLDEL-----------EGSADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 28 ~~~I~~iA~~lgl~~~~le~YG~~kAKi~l~-~l~~~-----------~~~~~GklIlVTaitPTP~GEGKTTttIGL~q 95 (507)
...+.++-+++. =+.+|...+|-.+. .+... ...+.++-||++| |.|.||||++..+++
T Consensus 19 ~~~~~~~~~~l~-----~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G----~~GtGKT~la~~la~ 89 (309)
T 3syl_A 19 GSGAKEVLEELD-----RELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTG----NPGTGKTTVALKMAG 89 (309)
T ss_dssp HTTHHHHHHHHH-----HHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEE----CTTSSHHHHHHHHHH
T ss_pred cccHHHHHHHHH-----HHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEEC----CCCCCHHHHHHHHHH
Confidence 345666655432 03567766665443 11111 1124455688887 779999999999999
Q ss_pred HHhhhcC
Q 010555 96 ALGAFLD 102 (507)
Q Consensus 96 aL~~~lg 102 (507)
.++ ..+
T Consensus 90 ~l~-~~~ 95 (309)
T 3syl_A 90 LLH-RLG 95 (309)
T ss_dssp HHH-HTT
T ss_pred HHH-hcC
Confidence 995 444
No 364
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=40.84 E-value=7.9 Score=39.74 Aligned_cols=62 Identities=16% Similarity=-0.044 Sum_probs=41.0
Q ss_pred HHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 440 ARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 440 ~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.+.++.++++++|+||++|+-.-..+.+.+...+++++.|+. ++.++ ++=|+|-.+|-+.+.
T Consensus 130 ~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~-v~~vS--Aktg~gI~eL~~~L~ 191 (423)
T 3qq5_A 130 DDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAK-VLLVS--ALQKKGFDDIGKTIS 191 (423)
T ss_dssp HHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCC-CCCCS--SCCTTSTTTHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCC-EEEEE--CCCCCCHHHHHHHHH
Confidence 455667777899999999997655554445666777677775 44444 344666666655544
No 365
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=40.82 E-value=19 Score=36.52 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=31.2
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlG 115 (507)
+-|.|-|||.+ |||||+-=|++.| ...|.++. ....|.++
T Consensus 51 ~~~vI~VTGTn------GKtTT~~~l~~iL-~~~G~~vg-~~~Sphl~ 90 (442)
T 1o5z_A 51 EYKTIHIGGTN------GKGSVANMVSNIL-VSQGYRVG-SYYSPHLS 90 (442)
T ss_dssp SSEEEEEECSS------SHHHHHHHHHHHH-HHHTCCEE-EECCSCSS
T ss_pred cCCEEEEECCc------CHHHHHHHHHHHH-HHCCCCEE-EECCCCcC
Confidence 45799999986 9999999999999 47898855 34555443
No 366
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=40.79 E-value=15 Score=31.42 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.1
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.+++| |-|.||||+.-.|.-+|
T Consensus 28 ~~~i~G----~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVG----ANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEE----CTTSSHHHHHHHHHHHT
T ss_pred cEEEEC----CCCCCHHHHHHHHHHHH
Confidence 888888 67999999987776666
No 367
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=40.51 E-value=53 Score=28.87 Aligned_cols=54 Identities=13% Similarity=0.014 Sum_probs=33.9
Q ss_pred cCCcEEEEecCCCCCCHH--------------HHHHHHHHHHHcCCCeEEEcccccc-CchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSKA--------------ELNAVRNAAMAAGAFDAVVCSHHAH-GGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~a--------------Ei~~v~~~~~~~G~~~~~~s~~wa~-GGeGa~~LA~~v~ 504 (507)
-++|+|++.|+..-..+. ..+.+++++++.|...+..+. ++ .|+|-.+|-+.++
T Consensus 131 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S--Ak~~~~gv~~lf~~l~ 199 (205)
T 1gwn_A 131 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS--ALQSENSVRDIFHVAT 199 (205)
T ss_dssp TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC--TTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee--eccCCcCHHHHHHHHH
Confidence 379999999997653211 124467788887743355444 44 6777777655544
No 368
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=40.44 E-value=18 Score=33.24 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=18.9
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
++|+|| |.|.|||+.++-+...+
T Consensus 7 i~l~tG----~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITG----TPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEEC----CTTSSHHHHHHHHHHHC
T ss_pred EEEEEe----CCCCCHHHHHHHHHHHH
Confidence 677887 57999999998877666
No 369
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=40.37 E-value=20 Score=33.60 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=23.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..++.|+++| |.|.||||++.-+.+.+.
T Consensus 42 ~~~~~vll~G----~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYG----LTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECB----CTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 4567889988 579999999999998884
No 370
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=40.29 E-value=69 Score=28.69 Aligned_cols=58 Identities=17% Similarity=0.022 Sum_probs=37.0
Q ss_pred HhccCCcEEEEecCCCCCCHHHHHHHHHHH----------------------------HHcCCC-eEEEccccccCchhh
Q 010555 446 TKAYGANVVVAVNMFATDSKAELNAVRNAA----------------------------MAAGAF-DAVVCSHHAHGGKGA 496 (507)
Q Consensus 446 ~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~----------------------------~~~G~~-~~~~s~~wa~GGeGa 496 (507)
..+.++|+++++|+....+..+++.+.++. ++.+.. .++.+. ++-|+|-
T Consensus 167 ~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~S--A~~~~gi 244 (262)
T 1yrb_A 167 DLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLS--AKTREGF 244 (262)
T ss_dssp HHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECC--TTTCTTH
T ss_pred hcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEE--ecCcccH
Confidence 345689999999999887776655444432 333321 133332 6778998
Q ss_pred HHHHHhhhh
Q 010555 497 FKEPVRMLH 505 (507)
Q Consensus 497 ~~LA~~v~~ 505 (507)
.+|-+.+..
T Consensus 245 ~~l~~~i~~ 253 (262)
T 1yrb_A 245 EDLETLAYE 253 (262)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877653
No 371
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4
Probab=40.09 E-value=7.1 Score=39.13 Aligned_cols=26 Identities=27% Similarity=0.133 Sum_probs=23.0
Q ss_pred EeccCc-------ccccccCchHHHHHHHHHhc
Q 010555 335 VHAGPF-------ANIAHGNSSIVADKIALKLV 360 (507)
Q Consensus 335 VHgGPF-------ANIAhG~nSviAtk~ALkla 360 (507)
-||||| .++.||.+|.-+=.-|++++
T Consensus 280 ~~gga~llG~~~pvi~~~g~a~~~~i~~ai~~A 312 (345)
T 1vi1_A 280 NYGGASLFGLKAPVIKAHGSSDSNAVFRAIRQA 312 (345)
T ss_dssp GSCCEEEETBSSCEEECCTTCCHHHHHHHHHHH
T ss_pred ccccceeecCCccEEEeCCCCCHHHHHHHHHHH
Confidence 699999 89999999998888887776
No 372
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=39.82 E-value=23 Score=34.34 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=33.8
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FG 119 (507)
..|++.+.|| |-|.||||-.++++.-. ..-|+++++ =+|+.+.-+|
T Consensus 17 ~~g~l~v~~G----~MgsGKTT~lL~~~~r~-~~~g~kvli--~kp~~D~Ryg 62 (234)
T 2orv_A 17 TRGQIQVILG----PMFSGKSTELMRRVRRF-QIAQYKCLV--IKYAKDTRYS 62 (234)
T ss_dssp -CCEEEEEEC----CTTSCHHHHHHHHHHHH-HTTTCCEEE--EEETTCCCC-
T ss_pred CceEEEEEEC----CCCCcHHHHHHHHHHHH-HHCCCeEEE--EeecCCccch
Confidence 4699999998 67999999999998766 355666553 3588876554
No 373
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=39.75 E-value=15 Score=34.78 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=18.8
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHH
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLC 94 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~ 94 (507)
..++|.||| +.|.||||++--|+
T Consensus 74 ~~~iI~I~G----~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTG----ISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEE----CTTSCHHHHHHHHH
T ss_pred CCEEEEEEC----CCCCCHHHHHHHHH
Confidence 356899999 46999999987776
No 374
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=39.72 E-value=36 Score=30.80 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010555 436 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 436 ~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~w 489 (507)
...+++.|+..+.+|.+.||.- +. .+.++.+.+.|++.|+. +.+-+|+
T Consensus 88 ~~~~~~~i~~A~~lGa~~v~~~---p~--~~~l~~l~~~a~~~gv~-l~lEn~~ 135 (257)
T 3lmz_A 88 EEEIDRAFDYAKRVGVKLIVGV---PN--YELLPYVDKKVKEYDFH-YAIHLHG 135 (257)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEE---EC--GGGHHHHHHHHHHHTCE-EEEECCC
T ss_pred HHHHHHHHHHHHHhCCCEEEec---CC--HHHHHHHHHHHHHcCCE-EEEecCC
Confidence 4578899999999999999963 32 56788899999999996 7888885
No 375
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=39.60 E-value=58 Score=31.12 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=40.4
Q ss_pred HhhhHHHHHHHHhccCCcEEEEecC-C-----CCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010555 435 GCVNLARHIANTKAYGANVVVAVNM-F-----ATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 435 G~~NL~~HIen~~~fGvpvVVAiN~-F-----~tDT~aEi~~v~~~~~~~G~~~~~~s~~w 489 (507)
-+++..+-|+.++++|++|.+.|.. | ..-+++++..+.+.+.+.|+..+.+++..
T Consensus 118 ~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt~ 178 (295)
T 1ydn_A 118 SIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTI 178 (295)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 3557777889999999999877664 4 12346677666777779999888888743
No 376
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=39.59 E-value=27 Score=29.99 Aligned_cols=87 Identities=8% Similarity=0.030 Sum_probs=46.9
Q ss_pred hcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhh
Q 010555 359 LVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVN 438 (507)
Q Consensus 359 lag~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~N 438 (507)
+....||||-+.+-+.+-.....+ +. -|.+|+|++-. .. . .++..
T Consensus 72 l~~~yD~viiD~~~~~~~~~~~~l----~~----ad~viiv~~~~-------------------~~------~--~~~~~ 116 (206)
T 4dzz_A 72 DLADYDFAIVDGAGSLSVITSAAV----MV----SDLVIIPVTPS-------------------PL------D--FSAAG 116 (206)
T ss_dssp HTTTSSEEEEECCSSSSHHHHHHH----HH----CSEEEEEECSC-------------------TT------T--HHHHH
T ss_pred hcCCCCEEEEECCCCCCHHHHHHH----HH----CCEEEEEecCC-------------------HH------H--HHHHH
Confidence 444569999998766533222222 11 46677777621 00 1 12334
Q ss_pred HHHHHHHHhc--cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010555 439 LARHIANTKA--YGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 439 L~~HIen~~~--fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~ 481 (507)
+.+.++.++. -++++-|.+|++...+.. .+.+++++++.|.+
T Consensus 117 ~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~-~~~~~~~l~~~~~~ 160 (206)
T 4dzz_A 117 SVVTVLEAQAYSRKVEARFLITRKIEMATM-LNVLKESIKDTGVK 160 (206)
T ss_dssp HHHHHHTTSCGGGCCEEEEEECSBCTTEEE-EHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCcEEEEEeccCCCchH-HHHHHHHHHHcCCc
Confidence 4444444442 357889999999866541 12345555556654
No 377
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=39.58 E-value=61 Score=27.30 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=30.8
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 449 YGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aEi~~v~~~~~-----~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.++|+|+++|+-.-..+.+.+.+.+... +.+.. +..+. ++=|+|-.+|-+.++.
T Consensus 116 ~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~ 174 (187)
T 1zj6_A 116 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWH-IQACC--ALTGEGLCQGLEWMMS 174 (187)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEE-EEECB--TTTTBTHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcE-EEEcc--CCCCcCHHHHHHHHHH
Confidence 5899999999976543222333333332 23442 44443 4557787777666543
No 378
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=39.32 E-value=21 Score=35.77 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=30.4
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSl 114 (507)
+.|.|-|||.+ |||||+-=|++.| ...|.++.. .--|.+
T Consensus 38 ~~~vI~VtGTn------GKtTT~~~l~~iL-~~~G~~vg~-~~sp~l 76 (428)
T 1jbw_A 38 QGRYIHVTGTN------GKGSAANAIAHVL-EASGLTVGL-YTSPFI 76 (428)
T ss_dssp SSCEEEEECSS------CHHHHHHHHHHHH-HHTTCCEEE-ECSSCS
T ss_pred cCcEEEEECCC------ChHHHHHHHHHHH-HHCCCCEEE-EeCCcc
Confidence 46799999986 9999999999999 477887643 344443
No 379
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=39.30 E-value=18 Score=34.66 Aligned_cols=46 Identities=28% Similarity=0.297 Sum_probs=32.6
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCccccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNL 140 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNL 140 (507)
+.|.+|-++| |-|.||||++--|..-+. . .|+ +|...|++|+++.+
T Consensus 78 ~~g~iigI~G----~~GsGKSTl~~~L~~~l~-~----------~~~-------------~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 78 RIPYIISIAG----SVAVGKSTTARVLQALLS-R----------WPE-------------HRRVELITTDGFLH 123 (308)
T ss_dssp CCCEEEEEEE----CTTSSHHHHHHHHHHHHT-T----------STT-------------CCCEEEEEGGGGBC
T ss_pred CCCEEEEEEC----CCCCCHHHHHHHHHHHHh-h----------CCC-------------CCeEEEEecCCccC
Confidence 5688998988 569999999877765552 1 132 35567888888764
No 380
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=39.24 E-value=70 Score=27.16 Aligned_cols=53 Identities=15% Similarity=0.020 Sum_probs=33.5
Q ss_pred CCcEEEEecCCCCCCHH--------------HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 450 GANVVVAVNMFATDSKA--------------ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 450 GvpvVVAiN~F~tDT~a--------------Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++|+||+.|+..-..+. ..+...+++++.+...+..+. ++=|+|-.+|-+.++
T Consensus 124 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~g~gi~~l~~~l~ 190 (201)
T 2q3h_A 124 KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECS--ALTQKNLKEVFDAAI 190 (201)
T ss_dssp SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC--TTTCTTHHHHHHHHH
T ss_pred CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEe--cCCCCCHHHHHHHHH
Confidence 89999999997543211 134456777777873344443 455677777666554
No 381
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=39.21 E-value=27 Score=33.59 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHcCCCCcccccccCceeeec--hhhhhhhc-CCCCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 27 EPLHISEIAQELNLKPNHYDLYGKYKAKVL--LSVLDELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 27 ~~~~I~~iA~~lgl~~~~le~YG~~kAKi~--l~~l~~~~-~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
...++.++..++ -++++..+.....|+ +..|+++- .=+.|.+++|+| +.|.||||.+.-++...
T Consensus 26 ~~~~~~~~~~~~---~~~~~~~~~~~~~i~TG~~~LD~~lgGl~~G~l~li~G----~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 26 DDGSIDEALVTV---YEEIESADGNITGVPSGFTELDRMTYGYKRRNFVLIAA----RPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CCCCCHHHHHHH---HHHHHTCSSSCCSBCCSCHHHHHHHSSBCTTCEEEEEC----CTTSSHHHHHHHHHHHH
T ss_pred CcccHHHHHHHH---HHHHHhccCCCCCccCChHHHHhhcCCCCCCcEEEEEe----CCCCCHHHHHHHHHHHH
Confidence 355677766542 123332211122333 23455432 236799999998 46999999988877655
No 382
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=39.10 E-value=7.8 Score=35.49 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.4
Q ss_pred HHhhcCCCCCCCCCCHHHHhhhhcC
Q 010555 198 LKKLGISKTKPEDLTPEEINRFARL 222 (507)
Q Consensus 198 l~klgi~~~~p~~lt~ee~~~~~~L 222 (507)
++++||+.+.-.+||+||+.++...
T Consensus 79 ~~~~gI~~~rv~~Lte~ei~~l~~~ 103 (145)
T 3bbn_M 79 LLDLNFDNKVTKDLSEEEVIILRKE 103 (145)
T ss_dssp GTTTTCCSCBTTSCCSSTTHHHHSS
T ss_pred HHHcCCCceEcCCCCHHHHHHHHHH
Confidence 5788997777999999999988866
No 383
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=38.89 E-value=43 Score=32.03 Aligned_cols=60 Identities=17% Similarity=0.059 Sum_probs=39.6
Q ss_pred HHHHhccCCcEEEEecCCCCC-CHHH-HHHHHHHHHHcC--CCeEEEccccccCchhhHHHHHhhhh
Q 010555 443 IANTKAYGANVVVAVNMFATD-SKAE-LNAVRNAAMAAG--AFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 443 Ien~~~fGvpvVVAiN~F~tD-T~aE-i~~v~~~~~~~G--~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
++.+++.++|+|+++|+..-. ..++ .+.+.++++..+ .. ++.++ +.-|+|-.+|-+.+..
T Consensus 115 ~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~-i~~vS--A~~g~gv~~L~~~l~~ 178 (308)
T 3iev_A 115 QNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTE-IVPIS--ALKGANLDELVKTILK 178 (308)
T ss_dssp HHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCC-EEECB--TTTTBSHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCe-EEEEe--CCCCCCHHHHHHHHHH
Confidence 667777899999999997653 3333 344555666665 33 44433 5667888888776653
No 384
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=38.81 E-value=1.1e+02 Score=27.42 Aligned_cols=52 Identities=8% Similarity=0.012 Sum_probs=36.3
Q ss_pred hhHHHHHHHHhccCCcEEEEecCCCC-CC-----HHHHHHHHHHHHHcCCCeEEEcccc
Q 010555 437 VNLARHIANTKAYGANVVVAVNMFAT-DS-----KAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 437 ~NL~~HIen~~~fGvpvVVAiN~F~t-DT-----~aEi~~v~~~~~~~G~~~~~~s~~w 489 (507)
..+++.|+..+.+|.+.||..=-+.. +. .+-++.+.+.|++.|+. +++-++.
T Consensus 85 ~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~~E~~~ 142 (272)
T 2q02_A 85 KKTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQ-GLVEPLG 142 (272)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHHTTTCE-EEECCCC
T ss_pred HHHHHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHHHHHHHHcCCE-EEEEecC
Confidence 57899999999999999987322211 11 34455666777788996 7777764
No 385
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=38.72 E-value=14 Score=34.32 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=19.1
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHH
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQA 96 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qa 96 (507)
++|+++|. .|.||||.+--|++.
T Consensus 3 ~~I~l~G~----~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGC----PGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECC----TTSSHHHHHHHHHHH
T ss_pred eEEEEECC----CCCCHHHHHHHHHHh
Confidence 57888885 699999998888774
No 386
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=38.71 E-value=90 Score=28.32 Aligned_cols=57 Identities=7% Similarity=0.029 Sum_probs=39.9
Q ss_pred HHHhhhHHHHHHHHhccCCcEEEEecC-CCC--CCH-------HHHHHHHHHHHHcCCCeEEEccccc
Q 010555 433 EAGCVNLARHIANTKAYGANVVVAVNM-FAT--DSK-------AELNAVRNAAMAAGAFDAVVCSHHA 490 (507)
Q Consensus 433 ~~G~~NL~~HIen~~~fGvpvVVAiN~-F~t--DT~-------aEi~~v~~~~~~~G~~~~~~s~~wa 490 (507)
++....+++.|+..+.+|.+.|+..-- .+. +++ +-++.+.+.|++.|+. +++-+|+.
T Consensus 80 ~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~~ 146 (286)
T 3dx5_A 80 EKTIEKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELFAQHNMY-VLLETHPN 146 (286)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCE-EEEECCTT
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHHHHhCCE-EEEecCCC
Confidence 455778999999999999999987432 222 233 2345566677789996 77777753
No 387
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=38.70 E-value=23 Score=35.61 Aligned_cols=32 Identities=25% Similarity=0.159 Sum_probs=27.9
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
.+.|-|||.+ |||||+-=|++.| ...|+++..
T Consensus 104 ~~vI~VTGTn------GKTTT~~ml~~iL-~~~g~~~~~ 135 (439)
T 2x5o_A 104 APIVAITGSN------GKSTVTTLVGEMA-KAAGVNVGV 135 (439)
T ss_dssp SCEEEEECSS------SHHHHHHHHHHHH-HHTTCCEEE
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HhcCCCEEE
Confidence 6899999987 9999999999999 578888653
No 388
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=38.63 E-value=15 Score=34.53 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.8
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHH
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~q 95 (507)
+|+=||.+| |.|.||||++..|.+
T Consensus 15 ~G~gvli~G----~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITG----EANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEE----SSSSSHHHHHHHHHH
T ss_pred CCEEEEEEc----CCCCCHHHHHHHHHH
Confidence 588889888 679999999999876
No 389
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=38.44 E-value=68 Score=27.70 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=34.8
Q ss_pred HHHHHHhccCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhh
Q 010555 441 RHIANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 441 ~HIen~~~fGvpvVVAiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
+.+......++|+|+++|+..-....+ .+.+.++++..++. +..+.. +=|+|-.+|-+.+
T Consensus 108 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~g~gv~~l~~~l 169 (218)
T 4djt_A 108 KEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE-YFEISA--KTAHNFGLPFLHL 169 (218)
T ss_dssp HHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCE-EEEEBT--TTTBTTTHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCc-EEEEec--CCCCCHHHHHHHH
Confidence 334444455899999999987554332 24456777777875 444443 3456655554443
No 390
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=38.16 E-value=11 Score=33.10 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=18.9
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+..|.+|| |.|.||||++--|+.-+
T Consensus 5 ~~~i~i~G----~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDG----PSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEEC----CTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 34677777 57999999887776655
No 391
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=38.14 E-value=25 Score=33.77 Aligned_cols=47 Identities=17% Similarity=0.281 Sum_probs=31.0
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcccc
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGI 120 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGi 120 (507)
..|.+.++|| |-|.||||..++++.-+ ..-|+++ .+=+|++.--+|-
T Consensus 26 ~~G~I~vitG----~M~sGKTT~Llr~~~r~-~~~g~kv--li~kp~~D~R~~~ 72 (219)
T 3e2i_A 26 HSGWIECITG----SMFSGKSEELIRRLRRG-IYAKQKV--VVFKPAIDDRYHK 72 (219)
T ss_dssp -CCEEEEEEE----CTTSCHHHHHHHHHHHH-HHTTCCE--EEEEEC-------
T ss_pred CCceEEEEEC----CCCCCHHHHHHHHHHHH-HHcCCce--EEEEeccCCcchh
Confidence 5699999998 46999999999998776 3557775 4567777766654
No 392
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=38.00 E-value=28 Score=34.48 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=31.0
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlG 115 (507)
+.|.++++.| |.|.||||++.-++..+ .+-|.+++..=-|.+.-
T Consensus 59 ~~G~iv~I~G----~pGsGKTtLal~la~~~-~~~g~~vlyi~~E~~~~ 102 (349)
T 2zr9_A 59 PRGRVIEIYG----PESSGKTTVALHAVANA-QAAGGIAAFIDAEHALD 102 (349)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHH-HHTTCCEEEEESSCCCC
T ss_pred cCCeEEEEEC----CCCCCHHHHHHHHHHHH-HhCCCeEEEEECCCCcC
Confidence 5799999997 67999999999998777 35555544333333333
No 393
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=37.95 E-value=55 Score=27.49 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=32.0
Q ss_pred ccCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 448 AYGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 448 ~fGvpvVVAiN~F~tDT~aEi~~v~~~~~-----~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
..++|+|+++|+..-..+.+.+.+.+... +.+.. +..+. ++=|+|-.+|-+.+++
T Consensus 120 ~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 120 LRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWH-IQACC--ALTGEGLCQGLEWMMS 179 (181)
T ss_dssp GTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE-EEECB--TTTTBTHHHHHHHHHT
T ss_pred hCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceE-EEEcc--CCCCcCHHHHHHHHHh
Confidence 36899999999976544222333333322 12332 33333 5667888888777654
No 394
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=37.73 E-value=17 Score=37.84 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=27.3
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+.+.|-|||.+ ||||||-=|++.| ...|+++.
T Consensus 121 ~~~vIaVTGTn------GKTTTt~li~~iL-~~~G~~~~ 152 (524)
T 3hn7_A 121 SRHVIAVAGTH------GKTTTTTMLAWIL-HYAGIDAG 152 (524)
T ss_dssp GSEEEEEECSS------CHHHHHHHHHHHH-HHTTCCCE
T ss_pred cCcEEEEECCC------CHHHHHHHHHHHH-HHcCCCce
Confidence 35799999997 9999999999999 57888764
No 395
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=37.60 E-value=77 Score=31.17 Aligned_cols=90 Identities=7% Similarity=-0.037 Sum_probs=52.7
Q ss_pred CCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHH
Q 010555 361 GPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLA 440 (507)
Q Consensus 361 g~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~ 440 (507)
+..||||-.++-|.+.-..-.+ + .-|.+|+|++-- .-++.+..+|+.+|.
T Consensus 246 ~~yD~VIID~pP~~~~~~~~al---~-----~aD~vliv~~p~----------------------~~~~~~~~~~l~~l~ 295 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLDPFLLNGL---A-----ASDLLLTPTPPA----------------------QVDFHSTLKYLTRLP 295 (403)
T ss_dssp GGCSEEEEEECSSCSHHHHHHH---H-----HCSEEEEEECSS----------------------HHHHHHHHHHHHTHH
T ss_pred hcCCEEEEECCCCccHHHHHHH---H-----HCCEEEEEecCc----------------------hhhHHHHHHHHHHHH
Confidence 4458898888766642111111 1 247888887621 223456788999999
Q ss_pred HHHHHHhccCCc-----EEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010555 441 RHIANTKAYGAN-----VVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 441 ~HIen~~~fGvp-----vVVAiN~F~tDT~aEi~~v~~~~~~~G~~ 481 (507)
+-++.++++|.+ +|..+|+|.. ....-+...+..+..|..
T Consensus 296 ~~~~~l~~~~~~~~l~giv~vl~~~~~-~~~~~~~~~~~~~~~g~~ 340 (403)
T 3ez9_A 296 EMLEQLEEEGVEPRLSASIGFMSKMTG-KRDHETSHSLAREVYASN 340 (403)
T ss_dssp HHHHHHHHTTCCCCCCEEEEEECC----CHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCCceeEEEEEEeccCC-chhHHHHHHHHHHHhhHh
Confidence 999999988766 4668898863 322222223333345653
No 396
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=37.48 E-value=60 Score=30.36 Aligned_cols=79 Identities=15% Similarity=0.021 Sum_probs=48.3
Q ss_pred cccCHHHHHHHhhhHHHHHHHHhccCCcEEEEe-cC-----CCC--CCHHH-------HHHHHHHHHHcCCCeEEEcc--
Q 010555 425 LNENVALVEAGCVNLARHIANTKAYGANVVVAV-NM-----FAT--DSKAE-------LNAVRNAAMAAGAFDAVVCS-- 487 (507)
Q Consensus 425 ~~enl~al~~G~~NL~~HIen~~~fGvpvVVAi-N~-----F~t--DT~aE-------i~~v~~~~~~~G~~~~~~s~-- 487 (507)
..+|.+.-++.+..+++.|+..+.+|.++||.- .. |.. ++++. +..+.++|++.|+..+++-+
T Consensus 102 ~~~d~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~l~lE~~~ 181 (316)
T 3qxb_A 102 LAPTLELQSLGYQHLKRAIDMTAAMEVPATGMPFGSYSAADALNPARREEIYAIARDMWIELAAYAKRQGLSMLYVEPVP 181 (316)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCBBCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCcCccccCCcccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 356777788999999999999999999999742 11 111 12222 34455667788995144443
Q ss_pred cc---ccCchhhHHHHHhh
Q 010555 488 HH---AHGGKGAFKEPVRM 503 (507)
Q Consensus 488 ~w---a~GGeGa~~LA~~v 503 (507)
++ ..--+.+.+|.+.|
T Consensus 182 ~~~~~~~t~~~~~~l~~~v 200 (316)
T 3qxb_A 182 LATEFPSSAADAARLMADL 200 (316)
T ss_dssp CTTBSSCSHHHHHHHHHHH
T ss_pred CccccCCCHHHHHHHHHHH
Confidence 22 22234445555554
No 397
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=37.18 E-value=59 Score=27.39 Aligned_cols=54 Identities=13% Similarity=0.014 Sum_probs=34.1
Q ss_pred cCCcEEEEecCCCCCCHH--------------HHHHHHHHHHHcCCCeEEEcccccc-CchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSKA--------------ELNAVRNAAMAAGAFDAVVCSHHAH-GGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~a--------------Ei~~v~~~~~~~G~~~~~~s~~wa~-GGeGa~~LA~~v~ 504 (507)
-++|+|++.|+..-..+. ..+...+++++.|...+..+. ++ .|+|-.+|-+.++
T Consensus 110 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S--a~~~~~gi~~l~~~i~ 178 (184)
T 1m7b_A 110 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS--ALQSENSVRDIFHVAT 178 (184)
T ss_dssp TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB--TTTBHHHHHHHHHHHH
T ss_pred CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee--ecCCCcCHHHHHHHHH
Confidence 389999999997543211 124466788887843355444 44 6777777665554
No 398
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=37.07 E-value=1.8e+02 Score=31.18 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=15.4
Q ss_pred HHHHhccCCcEEEEecCCCC
Q 010555 443 IANTKAYGANVVVAVNMFAT 462 (507)
Q Consensus 443 Ien~~~fGvpvVVAiN~F~t 462 (507)
++.++.+++|+||++|+-.-
T Consensus 115 l~~l~~~~vPiIVViNKiDl 134 (594)
T 1g7s_A 115 LNILRMYRTPFVVAANKIDR 134 (594)
T ss_dssp HHHHHHTTCCEEEEEECGGG
T ss_pred HHHHHHcCCeEEEEeccccc
Confidence 34466799999999998643
No 399
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=37.07 E-value=14 Score=32.21 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=21.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qa 96 (507)
+.|.++.+.| |-|.||||+..-|+-.
T Consensus 23 ~~G~~~~l~G----~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 23 ETQAITEVFG----EFGSGKTQLAHTLAVM 48 (231)
T ss_dssp ESSEEEEEEE----STTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHH
Confidence 5688999988 6799999998777543
No 400
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=36.93 E-value=13 Score=37.43 Aligned_cols=27 Identities=30% Similarity=0.212 Sum_probs=21.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+..++|+++|. -|.||||++.-|++.+
T Consensus 256 ~~~~lIil~G~----pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGF----PGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESC----TTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECC----CCCCHHHHHHHHHHhc
Confidence 45789999984 6999999887766544
No 401
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=36.88 E-value=12 Score=32.97 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=17.8
Q ss_pred EEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|++|| |-|.||||++-=|++.+
T Consensus 3 I~l~G----~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMG----LPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEC----STTSSHHHHHHHHHHHH
T ss_pred EEEEC----CCCCCHHHHHHHHHHHh
Confidence 66777 46999999998888776
No 402
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=36.52 E-value=1.4e+02 Score=30.81 Aligned_cols=85 Identities=19% Similarity=0.235 Sum_probs=48.9
Q ss_pred CCCceeeccccch---hhHHHHhhhccCcccceeecCceeEEeccCcccccccCchHHHHHHHHHhcCCCCeEEe---ec
Q 010555 297 AGDPITADDLGVG---GALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVT---EA 370 (507)
Q Consensus 297 ~g~PVta~DL~~~---GAmt~LLkdAikPNLvQTlEgtPa~VHgGPFANIAhG~nSviAtk~ALklag~~dyVVT---EA 370 (507)
..+++|.+=++.- ||+-++ +-+++.=.+||| +.||.+-.-.-.......+-.++-| |-
T Consensus 7 ~~~~~~~nP~k~C~~~GA~~~~----------~~i~~~~~ivHG------p~GC~~~~~~~~~r~f~e~~~~~sT~l~E~ 70 (458)
T 3pdi_B 7 RNKALAVSPLKASQTMGAALAI----------LGLARSMPLFHG------SQGCTAFAKVFFVRHFREPVPLQTTAMDQV 70 (458)
T ss_dssp CCCSCEESCCCCCHHHHHHHHH----------TTBTTEEEEEES------CHHHHHHHHHHHHHHHCSCCCCEECCCCTT
T ss_pred CCcccccCccccChHHHHHHHH----------HhhcCeEEEeec------CchhhhhhHHHHHhhcCCCcceeeeccccc
Confidence 3556666666543 666665 347888899999 5799987644333333221122222 22
Q ss_pred c--cccccccccccc----cccccCCCCcceEEEEeeeh
Q 010555 371 G--FGADIGAEKFMN----IKCRYSGLTPQCAVIVATIR 403 (507)
Q Consensus 371 G--FGaDlGaEKF~d----IKCr~sgl~PdavVlVaTvR 403 (507)
- ||. .||..+ +.-| ++|++++|++|.-
T Consensus 71 d~VfGg---~~~L~~~I~~~~~~---~~P~~I~V~tTC~ 103 (458)
T 3pdi_B 71 SSVMGA---DENVVEALKTICER---QNPSVIGLLTTGL 103 (458)
T ss_dssp TTSSCS---HHHHHHHHHHHHHH---TCCSEEEEEECHH
T ss_pred ccccCc---HHHHHHHHHHHHHh---cCCCEEEEECCcH
Confidence 2 552 345432 2223 3799999999964
No 403
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=36.03 E-value=1.5e+02 Score=24.87 Aligned_cols=123 Identities=14% Similarity=0.151 Sum_probs=60.7
Q ss_pred cccCchHHHHHHHHHhcCCCCeEEeeccccccc---ccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCC
Q 010555 344 AHGNSSIVADKIALKLVGPGGFVVTEAGFGADI---GAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPL 420 (507)
Q Consensus 344 AhG~nSviAtk~ALklag~~dyVVTEAGFGaDl---GaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL 420 (507)
..|-...++.++.-...+ .++.|.-.|++-+- ..++|.. .....+||.|||-.=.--+.........
T Consensus 36 ~~~~~~~l~~~l~~~~~~-~~~~~~n~g~~G~~~~~~~~~~~~---~~~~~~pd~vvi~~G~ND~~~~~~~~~~------ 105 (216)
T 3rjt_A 36 GNGYVALVDAHLQVLHPD-WRIRVVNVGTSGNTVADVARRWED---DVMALQPDYVSLMIGVNDVWRQFDMPLV------ 105 (216)
T ss_dssp CSSHHHHHHHHHHHHCGG-GCCEEEECCCTTCCHHHHHHHHHH---HTGGGCCSEEEEECCHHHHHHHHHSTTC------
T ss_pred CccHHHHHHHHHHhhCCC-CCeEEEECCCCCccHHHHHHHHHh---HHhhcCCCEEEEEeeccccchhhccccc------
Confidence 344445555555554321 13555555654331 1223221 1123569988886544333221110000
Q ss_pred chhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEe-cCCCCCCH--------HHHHHHHHHHHHcCCC
Q 010555 421 DHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFATDSK--------AELNAVRNAAMAAGAF 481 (507)
Q Consensus 421 ~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAi-N~F~tDT~--------aEi~~v~~~~~~~G~~ 481 (507)
.. ....++..+. ||.+-|+.+++.|.++|++- ...+.... +=-+.++++|++.|+.
T Consensus 106 -~~-~~~~~~~~~~---~l~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~ 170 (216)
T 3rjt_A 106 -VE-RHVGIDEYRD---TLRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVP 170 (216)
T ss_dssp -GG-GCCCHHHHHH---HHHHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred -cc-cCCCHHHHHH---HHHHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHHHHHcCCe
Confidence 00 1223444444 66666788887798888873 22222211 2235677889999986
No 404
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=35.71 E-value=38 Score=29.24 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=42.5
Q ss_pred ccCHHHHHHHhhhHHHHHHHHhcc--CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 010555 426 NENVALVEAGCVNLARHIANTKAY--GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 486 (507)
Q Consensus 426 ~enl~al~~G~~NL~~HIen~~~f--GvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s 486 (507)
+.+++.+.+ .|.+.++..-.| |-|||+=+-.+. ++.+++.+.+.|++.|..-+.++
T Consensus 24 ~~d~~~l~~---~L~~ki~~aP~FF~~aPVVlDl~~l~--~~~dl~~L~~~l~~~gl~~vGV~ 81 (120)
T 3ghf_A 24 EAEPEVIRQ---ALEDKIAQAPAFLKHAPVVINVSGLE--SPVNWPELHKIVTSTGLRIIGVS 81 (120)
T ss_dssp SCCHHHHHH---HHHHHHHHSHHHHTTCEEEEEEEECC--SSCCHHHHHHHHHTTTCEEEEEE
T ss_pred CCCHHHHHH---HHHHHHHhChHhhCCCcEEEEccccC--ChHHHHHHHHHHHHcCCEEEEEe
Confidence 456777765 566778888884 899999888776 34679999999999999744443
No 405
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=35.59 E-value=18 Score=32.82 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=20.2
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.-.+|.+||. -|+||||++--|++.|
T Consensus 11 ~~~iIgltG~----~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGK----IGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECS----TTSSHHHHHHHHHHHH
T ss_pred cceEEEEECC----CCCCHHHHHHHHHHhc
Confidence 3457888885 6999999998777654
No 406
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A
Probab=35.37 E-value=48 Score=31.91 Aligned_cols=80 Identities=18% Similarity=0.095 Sum_probs=50.2
Q ss_pred ceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecC-CCC--CCHHHHHH
Q 010555 394 QCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNM-FAT--DSKAELNA 470 (507)
Q Consensus 394 davVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~-F~t--DT~aEi~~ 470 (507)
|.+=+|--+.+||-. - .++-.+++.++.+-|. |.|+=|.|-. +-. .|++|+..
T Consensus 95 dEIDmVinig~lk~g--~----------~~~v~~ei~~v~~a~~------------~~~lKvIiEt~~L~~~~t~eei~~ 150 (231)
T 3ndo_A 95 TEIDMVIDVGAALAG--D----------LDAVSADITAVRKAVR------------AATLKVIVESAALLEFSGEPLLAD 150 (231)
T ss_dssp SEEEEECCHHHHHTT--C----------HHHHHHHHHHHHHHTT------------TSEEEEECCHHHHHHHTCHHHHHH
T ss_pred CEEEEEeehHhhhcc--c----------HHHHHHHHHHHHHHcc------------CCceEEEEECcccCCCCCHHHHHH
Confidence 567777777777631 1 2333344444444331 5566555543 212 27999999
Q ss_pred HHHHHHHcCCCeEEEccccc-cCchhhH
Q 010555 471 VRNAAMAAGAFDAVVCSHHA-HGGKGAF 497 (507)
Q Consensus 471 v~~~~~~~G~~~~~~s~~wa-~GGeGa~ 497 (507)
.++.|.++|+..+=.|+.|. .||.--.
T Consensus 151 a~~ia~~aGADfVKTSTGf~~~~gAt~e 178 (231)
T 3ndo_A 151 VCRVARDAGADFVKTSTGFHPSGGASVQ 178 (231)
T ss_dssp HHHHHHHTTCSEEECCCSCCTTCSCCHH
T ss_pred HHHHHHHHCcCEEEcCCCCCCCCCCCHH
Confidence 99999999998566677797 6776543
No 407
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=35.32 E-value=22 Score=36.04 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=23.2
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 66 ~~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
-+.|++|++.| |-|.||||++--|+..+
T Consensus 166 i~~~~~i~l~G----~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKG----PIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEEC----STTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEEC----CCCCCHHHHHHHHHhhc
Confidence 36799999998 78999999988887544
No 408
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=35.16 E-value=9.5 Score=33.38 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=15.3
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHH
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~q 95 (507)
.|.+|| |-|.||||++--|++
T Consensus 4 ~i~l~G----~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTG----GIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEC----STTSCHHHHHHHHHT
T ss_pred EEEEEC----CCCCCHHHHHHHHHH
Confidence 466666 579999998766644
No 409
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=35.03 E-value=37 Score=33.73 Aligned_cols=62 Identities=10% Similarity=0.098 Sum_probs=36.0
Q ss_pred HHHHHHHhccCC-cEEEEecCCCCCCH----HHHHHHHHHHHHc---CCCeEEEccccccCchhhHHHHHhhh
Q 010555 440 ARHIANTKAYGA-NVVVAVNMFATDSK----AELNAVRNAAMAA---GAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 440 ~~HIen~~~fGv-pvVVAiN~F~tDT~----aEi~~v~~~~~~~---G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
..|+..++.+|+ |+||++|+-.-.++ +..+.+++++++. ++. ++.++.+ =|+|-.+|-+.+.
T Consensus 124 ~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-~i~vSA~--~g~gi~~L~~~l~ 193 (408)
T 1s0u_A 124 KEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAP-IIPISAH--HEANIDVLLKAIQ 193 (408)
T ss_dssp HHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCC-EEEC--------CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCe-EEEeeCC--CCCCHHHHHHHHH
Confidence 356666677787 68999999765333 2356667776642 454 5555544 3677777766654
No 410
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=34.93 E-value=14 Score=31.09 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=20.7
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
-|+++| |.|.||||++.-+++.+.
T Consensus 40 ~~ll~G----~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSG----PPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEEC----STTSSHHHHHHHHHHHHH
T ss_pred eEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 388888 679999999999998884
No 411
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=34.75 E-value=71 Score=27.98 Aligned_cols=46 Identities=9% Similarity=-0.066 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHhccCCcEE-EEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010555 436 CVNLARHIANTKAYGANVV-VAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 436 ~~NL~~HIen~~~fGvpvV-VAiN~F~tDT~aEi~~v~~~~~~~G~~ 481 (507)
+..+.+.++.+++.++++. |.+|++..++...-+.+.++.+..|.+
T Consensus 152 ~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~ 198 (224)
T 1byi_A 152 INHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAP 198 (224)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCC
Confidence 3456666777778899966 889999887654444555555557775
No 412
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=34.64 E-value=24 Score=36.23 Aligned_cols=32 Identities=34% Similarity=0.245 Sum_probs=27.4
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+-++|-|||.| |||||+-=|.+.| ...|+++.
T Consensus 107 ~~~vI~VTGTn------GKTTT~~ml~~iL-~~~g~~~~ 138 (498)
T 1e8c_A 107 NLRLVGVTGTN------GKTTTTQLLAQWS-QLLGEISA 138 (498)
T ss_dssp SSEEEEEESSS------CHHHHHHHHHHHH-HHTTCCEE
T ss_pred cCeEEEEeCCc------ChHHHHHHHHHHH-HhCCCCEE
Confidence 46799999987 9999999999999 47788754
No 413
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=34.63 E-value=35 Score=34.53 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=27.2
Q ss_pred hhhhhc-CCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 59 VLDELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 59 ~l~~~~-~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.|+++- .-+.|.+|+|+| |-|.||||.+.-++..+.
T Consensus 192 ~LD~~~gGl~~G~liiI~G----~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAA----RPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp HHHHHHSSBCTTCEEEEEC----CTTSCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 455432 236799999998 569999999998888773
No 414
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=34.53 E-value=2e+02 Score=27.67 Aligned_cols=60 Identities=8% Similarity=0.013 Sum_probs=36.9
Q ss_pred CHHHHHHHhhhHHHHHHHHh---ccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010555 428 NVALVEAGCVNLARHIANTK---AYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 428 nl~al~~G~~NL~~HIen~~---~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~w 489 (507)
|.+.+.+=+..+++.+..+. .-++||+|=++- .-|++|+..+.+.+++.|+.-+.+++++
T Consensus 186 ~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~--~~~~~~~~~~a~~l~~~Gvd~i~vsn~~ 248 (336)
T 1f76_A 186 YGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAP--DLSEEELIQVADSLVRHNIDGVIATNTT 248 (336)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCS--CCCHHHHHHHHHHHHHTTCSEEEECCCB
T ss_pred CHHHHHHHHHHHHHHHHhhhhcccccCceEEEecC--CCCHHHHHHHHHHHHHcCCcEEEEeCCc
Confidence 44444444444444443321 126899996653 2356788888888999999756666653
No 415
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=34.38 E-value=69 Score=30.61 Aligned_cols=44 Identities=14% Similarity=0.060 Sum_probs=31.1
Q ss_pred hHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010555 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~ 481 (507)
...+-|+.+++.|+++.+-.-..+..+++|+..+.+++++.|+.
T Consensus 147 ~v~~~i~~l~~~g~~v~i~~vv~~g~n~~ei~~~~~~~~~~g~~ 190 (340)
T 1tv8_A 147 TILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIE 190 (340)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECTTTTGGGHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCCEEEEEEEeCCCCHHHHHHHHHHHHhcCCe
Confidence 34444556667788765544345555778999999999999985
No 416
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=34.25 E-value=14 Score=41.82 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=21.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qa 96 (507)
|++|+|+|||. .|+|||+++-.---|
T Consensus 22 p~~~l~v~tG~----SGSGKSsLafdtl~a 47 (916)
T 3pih_A 22 PKNRLVVITGV----SGSGKSSLAMDTIYA 47 (916)
T ss_dssp ETTSEEEEEES----TTSSSHHHHTTTHHH
T ss_pred CCCcEEEEECC----CCCcHHHHHHHHHHH
Confidence 78999999997 599999999875444
No 417
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=34.12 E-value=1e+02 Score=30.57 Aligned_cols=55 Identities=24% Similarity=0.273 Sum_probs=44.4
Q ss_pred HHHHHHHhccCCcEEE-Eec---CCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchh
Q 010555 440 ARHIANTKAYGANVVV-AVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 440 ~~HIen~~~fGvpvVV-AiN---~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeG 495 (507)
.+.|+.+++.|+++|= .++ .|..|.-+.++.+.++|.+.|+. +++.-|...|+..
T Consensus 57 ~~~i~~lk~~G~N~VRip~~~~~~~~~~~l~~ld~~v~~a~~~Giy-VIlDlH~~~g~~~ 115 (345)
T 3jug_A 57 STAIPAIAEQGANTIRIVLSDGGQWEKDDIDTVREVIELAEQNKMV-AVVEVHDATGRDS 115 (345)
T ss_dssp HHHHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHTTTCE-EEEEECTTTTCCC
T ss_pred HHHHHHHHHcCCCEEEEEecCCCccCHHHHHHHHHHHHHHHHCCCE-EEEEeccCCCCCc
Confidence 4688999999999884 443 56778889999999999999996 8888887776544
No 418
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=34.03 E-value=14 Score=33.69 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.4
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++..|.+.|. -|.||||+.--|++.|+
T Consensus 26 ~~~~i~l~G~----~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGP----PGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECC----TTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 3678999884 59999999988888774
No 419
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=33.96 E-value=77 Score=26.59 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=34.7
Q ss_pred HHhccCCcEEEEecCCCCCCHHHHHHHHHHHHH-----cCCCeEEEccccccCchhhHHHHHhhh
Q 010555 445 NTKAYGANVVVAVNMFATDSKAELNAVRNAAMA-----AGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 445 n~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~-----~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.++..++|+++++|+..-..+.|++...+..++ .+.. +..++ ++-|+|-.+|-+.+.
T Consensus 129 ~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gv~~l~~~l~ 190 (195)
T 1svi_A 129 FLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE-LILFS--SETKKGKDEAWGAIK 190 (195)
T ss_dssp HHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE-EEECC--TTTCTTHHHHHHHHH
T ss_pred HHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc-eEEEE--ccCCCCHHHHHHHHH
Confidence 344589999999999876666665443333222 2343 44443 455678777766654
No 420
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=33.85 E-value=69 Score=28.79 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=19.0
Q ss_pred HHHHHHHhccCCcEEEEecCCCCC
Q 010555 440 ARHIANTKAYGANVVVAVNMFATD 463 (507)
Q Consensus 440 ~~HIen~~~fGvpvVVAiN~F~tD 463 (507)
...|+..+.-|+.|.|+.|.-..|
T Consensus 93 kdfieeakergvevfvvynnkddd 116 (162)
T 2l82_A 93 KDFIEEAKERGVEVFVVYNNKDDD 116 (162)
T ss_dssp HHHHHHHHHTTCEEEEEEECSCHH
T ss_pred HHHHHHHHhcCcEEEEEecCCCch
Confidence 346889999999999999965443
No 421
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=33.82 E-value=14 Score=34.97 Aligned_cols=25 Identities=48% Similarity=0.771 Sum_probs=20.0
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
..+|.++| |.|.||||++--|++.|
T Consensus 9 ~~~i~i~G----~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDG----PAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEEC----CTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 34677776 67999999998888777
No 422
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=33.72 E-value=31 Score=36.73 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=26.7
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~ 107 (507)
+.|.+|.+.|-| |.||||+..-|+--+ ..-+.+..+
T Consensus 291 ~~GeVI~LVGpN----GSGKTTLl~~LAgll-~~~~G~V~l 326 (503)
T 2yhs_A 291 KAPFVILMVGVN----GVGKTTTIGKLARQF-EQQGKSVML 326 (503)
T ss_dssp CTTEEEEEECCT----TSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred cCCeEEEEECCC----cccHHHHHHHHHHHh-hhcCCeEEE
Confidence 468899998864 999999998888766 344555443
No 423
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=33.71 E-value=83 Score=34.87 Aligned_cols=54 Identities=15% Similarity=0.101 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHhccCCcEEEEecCCC--CC------CHHHHHHHHHHHHHcCCCeEEEcccc
Q 010555 436 CVNLARHIANTKAYGANVVVAVNMFA--TD------SKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 436 ~~NL~~HIen~~~fGvpvVVAiN~F~--tD------T~aEi~~v~~~~~~~G~~~~~~s~~w 489 (507)
+.|+..+|+-+++.|..|.+++-.+. .| +.+.+..+.+.+.++|+..+.+|+.-
T Consensus 223 l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~l~~~Ga~~I~l~DT~ 284 (718)
T 3bg3_A 223 LPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMA 284 (718)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHHHHHHTCSEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCcC
Confidence 46999999999999999999898772 23 45666666666678999877787753
No 424
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=33.28 E-value=1.2e+02 Score=29.15 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=42.7
Q ss_pred HHHHhhhHHHHHHHHhccCCcEEEEec-CCC-----CCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010555 432 VEAGCVNLARHIANTKAYGANVVVAVN-MFA-----TDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 432 l~~G~~NL~~HIen~~~fGvpvVVAiN-~F~-----tDT~aEi~~v~~~~~~~G~~~~~~s~~w 489 (507)
.+.-++...+.|+.+++.|++|.+.+= .|. .-+.+++..+.+.+.++|+..+.+++.-
T Consensus 116 ~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~ 179 (298)
T 2cw6_A 116 IEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTI 179 (298)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 344566788889999999999887665 242 1246777777777889999877788654
No 425
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=33.24 E-value=1.6e+02 Score=30.99 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=90.2
Q ss_pred hhhHHHHhhhccCcccceeecCceeEEeccCcccccccCchHHHHHHHHHhcCCCCeEEe-----ecccccccccccccc
Q 010555 309 GGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVT-----EAGFGADIGAEKFMN 383 (507)
Q Consensus 309 ~GAmt~LLkdAikPNLvQTlEgtPa~VHgGPFANIAhG~nSviAtk~ALklag~~dyVVT-----EAGFGaDlGaEKF~d 383 (507)
.||+.+++ .+++.=.+||| +.||.+-+-.-+.......-.++.| ++=|| |-||..+
T Consensus 71 ~GA~~a~~----------~I~d~~~ivHG------p~GC~~y~r~~~~~~f~e~~~~~sT~l~E~d~VfG---g~~kL~~ 131 (519)
T 1qgu_B 71 LGAVLCSL----------GFANTLPYVHG------SQGCVAYFRTYFNRHFKEPIACVSDSMTEDAAVFG---GNNNMNL 131 (519)
T ss_dssp HHHHHHHH----------TBTTEEEEEES------CHHHHHHHHHHHHHHHTSCCCCEECCCCTTHHHHC---SHHHHHH
T ss_pred HHHHHHHh----------ccCCeEEEEEC------ChHHHHhHHhhhhhccCCCcceeeccccccccccC---CHHHHHH
Confidence 36776654 46777789999 6799876533333333311133332 24566 5566543
Q ss_pred ccccc--CCCCcceEEEEeeehH-------------HHhcC----CCCCccCCCCCchhccccCHHHHHHHhhhHHHHHH
Q 010555 384 IKCRY--SGLTPQCAVIVATIRA-------------LKMHG----GGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIA 444 (507)
Q Consensus 384 IKCr~--sgl~PdavVlVaTvRA-------------LK~HG----G~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIe 444 (507)
- ++. .-.+|++++|++|.-+ ++-.+ |.|.+..- -+.|.....+.-...+.-|.+|+-
T Consensus 132 a-I~~~~~~~~P~~I~V~tTC~~eiIGdDi~~v~~~~~~~~~~p~g~pVi~v~---tpgf~gs~~~G~~~a~~al~~~l~ 207 (519)
T 1qgu_B 132 G-LQNASALYKPEIIAVSTTCMAEVIGDDLQAFIANAKKDGFVDSSIAVPHAH---TPSFIGSHVTGWDNMFEGFAKTFT 207 (519)
T ss_dssp H-HHHHHHHHCCSEEEEEECHHHHHHTCCHHHHHHHHHHTTSSCTTSBCCBCC---CCTTSSCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHhhCCCEEEEeCCCcHHHhCCCHHHHHHHHHHhcCCCCCCcEEEee---CCCcCCChhHHHHHHHHHHHHHhh
Confidence 1 111 1248999999998632 22111 32222111 122333223444444444545443
Q ss_pred HH-hcc--CCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEE-c--------------cccccCchhhHHHHHh
Q 010555 445 NT-KAY--GANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVV-C--------------SHHAHGGKGAFKEPVR 502 (507)
Q Consensus 445 n~-~~f--GvpvVVAiN~F~tDT-~aEi~~v~~~~~~~G~~~~~~-s--------------~~wa~GGeGa~~LA~~ 502 (507)
.- ..- .-+-|-.|--| ++ ..++..|+++.++.|+. +.+ . ..|. ||..-.||.+.
T Consensus 208 ~~~~~~~~~~~~VNIlg~~--~~~~gD~~eik~lL~~~Gi~-v~~lpd~s~~ld~~~~~~~~~~~-gg~~~~ei~~~ 280 (519)
T 1qgu_B 208 ADYQGQPGKLPKLNLVTGF--ETYLGNFRVLKRMMEQMAVP-CSLLSDPSEVLDTPADGHYRMYS-GGTTQQEMKEA 280 (519)
T ss_dssp TTCCCCTTSEEEEEEECCS--CCCHHHHHHHHHHHHHHTCC-EEESSCTTTTTSCCCSSCCCSCC-CCBCHHHHHHG
T ss_pred ccccccCCCCCcEEEECCC--CCCcccHHHHHHHHHHcCCe-EEEecCccccccCcccCcccccC-CCCCHHHHHhh
Confidence 21 011 11223334344 44 88899999999999997 432 2 4788 88888887754
No 426
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=33.17 E-value=31 Score=36.08 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=27.5
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a 105 (507)
...+|+++|. -|.||||++.-|++.|+ ..+.++
T Consensus 34 ~~~lIvlvGl----pGSGKSTia~~La~~L~-~~~~d~ 66 (520)
T 2axn_A 34 SPTVIVMVGL----PARGKTYISKKLTRYLN-WIGVPT 66 (520)
T ss_dssp CCEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCE
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHHh-hcCCCe
Confidence 3468999997 59999999999999995 677765
No 427
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=33.15 E-value=65 Score=27.57 Aligned_cols=65 Identities=12% Similarity=0.037 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHh--ccCCcEEEEecCCCCCC-------HHHH--HHHHHHHH----HcCCCeEEEccccccCchhhHHHH
Q 010555 436 CVNLARHIANTK--AYGANVVVAVNMFATDS-------KAEL--NAVRNAAM----AAGAFDAVVCSHHAHGGKGAFKEP 500 (507)
Q Consensus 436 ~~NL~~HIen~~--~fGvpvVVAiN~F~tDT-------~aEi--~~v~~~~~----~~G~~~~~~s~~wa~GGeGa~~LA 500 (507)
+.++.+.++.++ .-++|+|++.|+..--. ..++ +...++++ +.++. +..+.... +|-.++-
T Consensus 113 ~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~e~Sa~~---~~v~~~f 188 (196)
T 3llu_A 113 LTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS-FYLTSIYD---HSIFEAF 188 (196)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE-EEEECTTS---THHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc-eEEEEech---hhHHHHH
Confidence 345555555552 35899999999976322 2222 22345566 55664 55665554 5666665
Q ss_pred Hhhh
Q 010555 501 VRML 504 (507)
Q Consensus 501 ~~v~ 504 (507)
+.++
T Consensus 189 ~~l~ 192 (196)
T 3llu_A 189 SKVV 192 (196)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 428
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=33.13 E-value=77 Score=27.41 Aligned_cols=57 Identities=12% Similarity=-0.038 Sum_probs=31.3
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHcC--------------CCeEEEccccccCchhhHHHHHhhhh
Q 010555 449 YGANVVVAVNMFATDSKAELNAVRNAAMAAG--------------AFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G--------------~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.++|+|++.|+-.-......+.+++++.... ...+-+-+.=++=|+|-.+|-+.+.+
T Consensus 125 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 125 ANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp TTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred CCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999965432112233445544211 11112223335667888887766654
No 429
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=33.04 E-value=13 Score=32.35 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=16.3
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHH
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~q 95 (507)
.|.+||. -|.||||++--|++
T Consensus 3 ~i~i~G~----~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGN----IGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEEC----TTSSHHHHHHHHHH
T ss_pred EEEEECC----CCcCHHHHHHHHHH
Confidence 5777774 69999998877765
No 430
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=33.00 E-value=14 Score=36.91 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=35.4
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePS 113 (507)
..+.+|++-|+ -|.||||+.-=|.+.|+ -.|.+ ++++++|+
T Consensus 84 ~~~vlIvfEG~----DgAGKgt~Ik~L~e~Ld-prg~~-V~~~~~Pt 124 (304)
T 3czq_A 84 GKRVMAVFEGR----DAAGKGGAIHATTANMN-PRSAR-VVALTKPT 124 (304)
T ss_dssp CCCEEEEEEES----TTSSHHHHHHHHHTTSC-TTTEE-EEECCSCC
T ss_pred CCCeEEEEeCC----CCCCHHHHHHHHHHHhc-ccCCe-EEEeCCcC
Confidence 46899999998 59999999999999994 66776 67899998
No 431
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=32.94 E-value=13 Score=32.84 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=17.3
Q ss_pred EEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|++|| |-|.||||++--|++.+
T Consensus 3 I~l~G----~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMG----LPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEC----STTSSHHHHHHHHHHHS
T ss_pred EEEEC----CCCCCHHHHHHHHHHHh
Confidence 66666 46999999988887665
No 432
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=32.93 E-value=14 Score=34.54 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=37.2
Q ss_pred HHHHhccCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 443 IANTKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 443 Ien~~~fGvpvVVAiN~F~tDT~aEi~-~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
+..+..+++|+|+++|+..-....++. .+.++++..|++ ++.+. +.-|+|-.+|-+.+.
T Consensus 103 ~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~-vi~~S--A~~g~gi~el~~~i~ 162 (258)
T 3a1s_A 103 LLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIP-VVFTS--SVTGEGLEELKEKIV 162 (258)
T ss_dssp HHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSC-EEECC--TTTCTTHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCC-EEEEE--eeCCcCHHHHHHHHH
Confidence 344566899999999986432111111 156677888987 55444 455778777766654
No 433
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=32.88 E-value=14 Score=42.50 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=20.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC 94 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~ 94 (507)
|++|+|+|||. .|+|||+++-.--
T Consensus 44 P~~~lvv~tG~----SGSGKSSLafdtl 67 (993)
T 2ygr_A 44 PRDALIVFTGL----SGSGKSSLAFDTI 67 (993)
T ss_dssp ESSSEEEEEES----TTSSHHHHHTTTH
T ss_pred cCCCEEEEECC----CCCcHHHHHHHHH
Confidence 78999999997 4999999988754
No 434
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=32.43 E-value=40 Score=33.95 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=27.1
Q ss_pred hhhhh-cCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 59 VLDEL-EGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 59 ~l~~~-~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.|+++ ..=+.|.+++|+| |.|.||||.+.-++....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G----~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAA----RPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEE----CTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEe----CCCCCHHHHHHHHHHHHH
Confidence 44443 2236799999998 569999999998887773
No 435
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=32.08 E-value=27 Score=36.32 Aligned_cols=32 Identities=22% Similarity=0.125 Sum_probs=27.3
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
+-++|-|||.| |||||+-=|.+.| ...|+++.
T Consensus 145 ~~~vI~VTGTn------GKTTT~~ml~~iL-~~~G~~~g 176 (535)
T 2wtz_A 145 RLTVIGITGTS------GKTTTTYLVEAGL-RAAGRVAG 176 (535)
T ss_dssp SSEEEEEESSS------CHHHHHHHHHHHH-HHTTCCEE
T ss_pred cceEEEeeCCC------ChHHHHHHHHHHH-HHCCCCEE
Confidence 45799999987 9999999999999 47788754
No 436
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=31.96 E-value=48 Score=33.79 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=33.7
Q ss_pred hHHHHHHHHhccCCc-EEEEecCCCCC--CHHHHH----HHHHHHHHcCC----CeEEEcccc
Q 010555 438 NLARHIANTKAYGAN-VVVAVNMFATD--SKAELN----AVRNAAMAAGA----FDAVVCSHH 489 (507)
Q Consensus 438 NL~~HIen~~~fGvp-vVVAiN~F~tD--T~aEi~----~v~~~~~~~G~----~~~~~s~~w 489 (507)
...+|+..++..|+| +||++|+-.-. +++.++ .+++++++.|. ..++.++.+
T Consensus 132 qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~ 194 (458)
T 1f60_A 132 QTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGW 194 (458)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTT
T ss_pred hHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecc
Confidence 556788888889997 89999997643 344443 35556666663 125555443
No 437
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=31.94 E-value=68 Score=29.50 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=33.9
Q ss_pred CCcEEEEecCCCCCCH-HH-------------HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 450 GANVVVAVNMFATDSK-AE-------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 450 GvpvVVAiN~F~tDT~-aE-------------i~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++|+|+++|+..-..+ .. .+...+++++.|...++.++ ++=|+|-.+|-+.++
T Consensus 259 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~l~~~l~ 325 (332)
T 2wkq_A 259 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS--ALTQRGLKTVFDEAI 325 (332)
T ss_dssp TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC--TTTCTTHHHHHHHHH
T ss_pred CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec--CCCCcCHHHHHHHHH
Confidence 8999999999753221 11 33456788888873355544 455778777766554
No 438
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*
Probab=31.91 E-value=95 Score=30.52 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=49.6
Q ss_pred ceEEEEeeehHHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecC-CCCCCHHHHHHHH
Q 010555 394 QCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNM-FATDSKAELNAVR 472 (507)
Q Consensus 394 davVlVaTvRALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~-F~tDT~aEi~~v~ 472 (507)
|.+=+|--+.+||- |- .++-.+++.++.+-| . |.|+=|.|.. +- |++|+...+
T Consensus 126 dEIDmViNig~lk~--g~----------~~~v~~eI~~v~~a~-----------~-~~~lKVIlEt~~L--t~eei~~A~ 179 (260)
T 3r12_A 126 DEIDMVINVGMLKA--KE----------WEYVYEDIRSVVESV-----------K-GKVVKVIIETCYL--DTEEKIAAC 179 (260)
T ss_dssp SEEEEECCHHHHHT--TC----------HHHHHHHHHHHHHHT-----------T-TSEEEEECCGGGC--CHHHHHHHH
T ss_pred CEEEEEeehhhhcc--cc----------HHHHHHHHHHHHHhc-----------C-CCcEEEEEeCCCC--CHHHHHHHH
Confidence 56777777887762 11 233334444443332 1 5666666653 22 679999999
Q ss_pred HHHHHcCCCeEEEccccccCchhh
Q 010555 473 NAAMAAGAFDAVVCSHHAHGGKGA 496 (507)
Q Consensus 473 ~~~~~~G~~~~~~s~~wa~GGeGa 496 (507)
+.|.++|+..+=.|+.|..||.-.
T Consensus 180 ~ia~eaGADfVKTSTGf~~~GAT~ 203 (260)
T 3r12_A 180 VISKLAGAHFVKTSTGFGTGGATA 203 (260)
T ss_dssp HHHHHTTCSEEECCCSSSSCCCCH
T ss_pred HHHHHhCcCEEEcCCCCCCCCCCH
Confidence 999999998666778898777543
No 439
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=31.66 E-value=29 Score=35.78 Aligned_cols=30 Identities=30% Similarity=0.207 Sum_probs=25.4
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a 105 (507)
.+.|-|||.+ ||||||-=|++.| ...|.+.
T Consensus 122 ~~~IaVTGTn------GKTTTt~ml~~iL-~~~g~~~ 151 (494)
T 4hv4_A 122 RHGIAVAGTH------GKTTTTAMLSSIY-AEAGLDP 151 (494)
T ss_dssp SEEEEEECSS------SHHHHHHHHHHHH-HHTTCCC
T ss_pred CCEEEEecCC------ChHHHHHHHHHHH-HhcCCCC
Confidence 3589999986 9999999999999 5788753
No 440
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=31.63 E-value=60 Score=32.75 Aligned_cols=60 Identities=15% Similarity=0.084 Sum_probs=36.8
Q ss_pred HHHHHHhccCCcEEEEecCCCCC--CHHHHHHHHHHHHHc-----CCCeEEEccccccCchhhHHHHHhh
Q 010555 441 RHIANTKAYGANVVVAVNMFATD--SKAELNAVRNAAMAA-----GAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 441 ~HIen~~~fGvpvVVAiN~F~tD--T~aEi~~v~~~~~~~-----G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
++++.++..|+|+|+++|+..-. .+...+.+.+.+++. +++ ++.++. +=|+|-.+|-+.+
T Consensus 297 ~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~SA--~~g~gv~~l~~~i 363 (456)
T 4dcu_A 297 RIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP-ILFMSA--LTKKRIHTLMPAI 363 (456)
T ss_dssp HHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSC-EEECCT--TTCTTGGGHHHHH
T ss_pred HHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCC-EEEEcC--CCCcCHHHHHHHH
Confidence 44555666899999999998643 233445555665544 455 555554 3467766655444
No 441
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=31.57 E-value=16 Score=32.40 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=17.8
Q ss_pred EEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|+++|. -|.||||.+--|++.|
T Consensus 3 I~l~G~----~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGA----PVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEES----TTSSHHHHHHHHHHHH
T ss_pred EEEECC----CCCCHHHHHHHHHHHh
Confidence 667774 5999999998888776
No 442
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=31.38 E-value=73 Score=28.76 Aligned_cols=53 Identities=9% Similarity=-0.077 Sum_probs=33.6
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 449 fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.++|+|++.|+..-..+. ..+..++++.+.++. +..+. ++=|+|-.+|-+.++
T Consensus 144 ~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~-~~e~S--Ak~g~~v~elf~~l~ 198 (211)
T 2g3y_A 144 EDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK-FIETS--AAVQHNVKELFEGIV 198 (211)
T ss_dssp TTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECB--TTTTBSHHHHHHHHH
T ss_pred CCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHH
Confidence 489999999997542211 123345667777874 55444 555788777766554
No 443
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=31.24 E-value=30 Score=35.39 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=26.9
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~ 106 (507)
-+.|-|||.| ||||||-=|++.| ...|++..
T Consensus 114 ~~vI~VTGTn------GKTTTt~ml~~iL-~~~G~~~~ 144 (469)
T 1j6u_A 114 KEEFAVTGTD------GKTTTTAMVAHVL-KHLRKSPT 144 (469)
T ss_dssp CCEEEEECSS------SHHHHHHHHHHHH-HHTTCCCE
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HHcCCCce
Confidence 4699999987 9999999999999 57888753
No 444
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=31.24 E-value=26 Score=33.04 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.5
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.|+++| |.|.||||+.--+.+.+
T Consensus 46 ~~li~G----~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLG----RPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEEC----CTTSSHHHHHHHHHHHH
T ss_pred eEEEEC----CCCCCHHHHHHHHHHHH
Confidence 899988 68999999999888877
No 445
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=31.23 E-value=17 Score=36.00 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=21.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|+.|+|+| |-|.||||+.--|..-+
T Consensus 173 ~~G~~i~ivG----~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAG----ETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEE----SSSSCHHHHHHHHHTTS
T ss_pred hcCCEEEEEC----CCCCCHHHHHHHHHhcC
Confidence 4588999998 34999999987776554
No 446
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=31.07 E-value=16 Score=41.98 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=20.8
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC 94 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~ 94 (507)
|++|+|+|||. .|+|||+++-.--
T Consensus 42 P~~~lvv~tG~----SGSGKSSLafdtl 65 (972)
T 2r6f_A 42 PRGKLVVLTGL----SGSGKSSLAFDTI 65 (972)
T ss_dssp ETTSEEEEEES----TTSSHHHHHTTTH
T ss_pred cCCcEEEEECC----CCCCHHHHHHHHH
Confidence 78999999997 5999999987653
No 447
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=31.00 E-value=15 Score=33.16 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=19.4
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+|.+++ |.|.||||++--|++.|+
T Consensus 8 iI~i~g----~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 8 IIAIGR----EFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp EEEEEE----CTTSSHHHHHHHHHHHTT
T ss_pred EEEEeC----CCCCCHHHHHHHHHHHhC
Confidence 566665 689999999999988774
No 448
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=30.95 E-value=2e+02 Score=27.75 Aligned_cols=35 Identities=20% Similarity=0.070 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEccccc---cCchhhHHH
Q 010555 464 SKAELNAVRNAAMAAGAFDAVVCSHHA---HGGKGAFKE 499 (507)
Q Consensus 464 T~aEi~~v~~~~~~~G~~~~~~s~~wa---~GGeGa~~L 499 (507)
++++++.|+++|++.|+. +++-+++. .|..++.+.
T Consensus 221 ~~~~l~~l~~l~~~~~il-lI~DEv~~g~~~g~~~~~~~ 258 (434)
T 3l44_A 221 KPGFLEKVNELVHEAGAL-VIYDEVITAFRFMYGGAQDL 258 (434)
T ss_dssp CTTHHHHHHHHHHTTTCE-EEEECTTTTTTSSSSCHHHH
T ss_pred CHHHHHHHHHHHHHcCCE-EEEeccccceeccccHHHHH
Confidence 889999999999999996 77777765 343344443
No 449
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=30.95 E-value=17 Score=32.53 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=21.5
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
+.|.|+| |.|+||||++--|...+. .-|.+
T Consensus 3 ~~v~IvG----~SGsGKSTL~~~L~~~~~-~~g~~ 32 (171)
T 2f1r_A 3 LILSIVG----TSDSGKTTLITRMMPILR-ERGLR 32 (171)
T ss_dssp CEEEEEE----SCHHHHHHHHHHHHHHHH-HTTCC
T ss_pred eEEEEEC----CCCCCHHHHHHHHHHHhh-hcCCc
Confidence 3566666 569999999999988873 44443
No 450
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=30.19 E-value=19 Score=34.74 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=23.4
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP 116 (507)
+++||| |.|.||||+---|.. + .-|++ +++=+|..|=
T Consensus 6 v~~i~G----~~GaGKTTll~~l~~-~--~~~~~--~aVi~~d~G~ 42 (318)
T 1nij_A 6 VTLLTG----FLGAGKTTLLRHILN-E--QHGYK--IAVIENEFGE 42 (318)
T ss_dssp EEEEEE----SSSSSCHHHHHHHHH-S--CCCCC--EEEECSSCCS
T ss_pred EEEEEe----cCCCCHHHHHHHHHh-h--cCCCc--EEEEEecCcc
Confidence 667777 689999998655432 2 23544 3344678774
No 451
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=30.16 E-value=1e+02 Score=29.01 Aligned_cols=55 Identities=11% Similarity=0.058 Sum_probs=38.4
Q ss_pred HHHhhhHHHHHHHHhccCCcEEEEecCCCC-CCHHHH-------HHHHHHHHHcCCCeEEEcccc
Q 010555 433 EAGCVNLARHIANTKAYGANVVVAVNMFAT-DSKAEL-------NAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 433 ~~G~~NL~~HIen~~~fGvpvVVAiN~F~t-DT~aEi-------~~v~~~~~~~G~~~~~~s~~w 489 (507)
++....+++.|+..+.+|.+.||. --++. .+++++ ..+.+.|++.|+. +++-+|.
T Consensus 110 ~~~~~~~~~~i~~A~~lG~~~v~~-~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~ 172 (305)
T 3obe_A 110 PKFDEFWKKATDIHAELGVSCMVQ-PSLPRIENEDDAKVVSEIFNRAGEITKKAGIL-WGYHNHS 172 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHHTTTCE-EEEECCS
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEe-CCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCE-EEEecCc
Confidence 445678999999999999999995 33322 344443 3455667788996 7776664
No 452
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=30.08 E-value=87 Score=27.65 Aligned_cols=59 Identities=10% Similarity=0.040 Sum_probs=37.1
Q ss_pred HHHHhcc--CCcEEEEecCCCCCC-----HHHHHHHHHHHHHcC--CCeEEEccccccCchhhHHHHHhhh
Q 010555 443 IANTKAY--GANVVVAVNMFATDS-----KAELNAVRNAAMAAG--AFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 443 Ien~~~f--GvpvVVAiN~F~tDT-----~aEi~~v~~~~~~~G--~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++.++.. ++|+++++|+-.-.. +++.+.+.+++...| .. +..+. ++-|+|-.+|-+.++
T Consensus 133 ~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S--A~~g~gi~~l~~~l~ 200 (228)
T 2qu8_A 133 FYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK-FSSFS--TLTGVGVEQAKITAC 200 (228)
T ss_dssp HHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEE-EEECC--TTTCTTHHHHHHHHH
T ss_pred HHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCce-EEEEe--cccCCCHHHHHHHHH
Confidence 4455555 899999999965432 233446777888777 43 44333 556777776655543
No 453
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=29.99 E-value=31 Score=35.15 Aligned_cols=28 Identities=18% Similarity=0.037 Sum_probs=24.2
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 66 ~~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
-+.|.+++|+| |.|.||||.+.-++..+
T Consensus 239 l~~G~l~li~G----~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 239 ARGGEVIMVTS----GSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CCTTCEEEEEE----SSCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEee----cCCCCchHHHHHHHHHH
Confidence 46799999999 46999999999888777
No 454
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=29.94 E-value=43 Score=34.25 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=29.5
Q ss_pred hhhhhhc-CCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 58 SVLDELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 58 ~~l~~~~-~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
.-|+++- .=+.|.+|+|+| +-|.||||.+.-++.... .-|++
T Consensus 185 ~~LD~~lgGl~~G~liiIaG----~pG~GKTtlal~ia~~~a-~~g~~ 227 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAA----RPSMGKTAFALKQAKNMS-DNDDV 227 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEE----CSSSSHHHHHHHHHHHHH-HTTCE
T ss_pred HHHHhhcCCCCCCcEEEEEe----CCCCChHHHHHHHHHHHH-HcCCE
Confidence 3455432 236799999999 469999999998887773 32543
No 455
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=29.93 E-value=54 Score=30.29 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=33.3
Q ss_pred HHhccC-CcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 445 NTKAYG-ANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 445 n~~~fG-vpvVVAiN~F~tDT~aEi~-~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.+..++ +|+|+++|+..-....++. .+.++++..|++ ++.+. +.=|+|-.+|-+.+.
T Consensus 103 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~~~~S--a~~g~gi~~l~~~i~ 161 (271)
T 3k53_A 103 ELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVP-VIPTN--AKKGEGVEELKRMIA 161 (271)
T ss_dssp HHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSC-EEECB--GGGTBTHHHHHHHHH
T ss_pred HHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCc-EEEEE--eCCCCCHHHHHHHHH
Confidence 344567 9999999997421111110 145566778887 55444 344677666665553
No 456
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=29.85 E-value=27 Score=30.89 Aligned_cols=27 Identities=41% Similarity=0.484 Sum_probs=20.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|+++.+.| |-|.||||+.--|+.-+
T Consensus 18 ~~Gei~~l~G----pnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSG----PSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEEC----STTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHhhC
Confidence 5688888877 67999999887664433
No 457
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=29.84 E-value=51 Score=29.04 Aligned_cols=59 Identities=12% Similarity=-0.073 Sum_probs=35.0
Q ss_pred HHHHhcc--CCcEEEEecCCCCCCH--------------HHHHHHHHHHHHcCCCeEEEccccccCchh-hHHHHHhh
Q 010555 443 IANTKAY--GANVVVAVNMFATDSK--------------AELNAVRNAAMAAGAFDAVVCSHHAHGGKG-AFKEPVRM 503 (507)
Q Consensus 443 Ien~~~f--GvpvVVAiN~F~tDT~--------------aEi~~v~~~~~~~G~~~~~~s~~wa~GGeG-a~~LA~~v 503 (507)
++.++++ ++|+|++.|+..-..+ -..+...++|++.|+..+..+. ++=|+| -.+|=+.+
T Consensus 122 ~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S--A~~g~g~v~~lf~~l 197 (214)
T 3q3j_B 122 RTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGS--AFTSEKSIHSIFRTA 197 (214)
T ss_dssp HHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECC--TTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEec--cCCCcccHHHHHHHH
Confidence 3444443 8999999998654221 2234567888888983355554 345666 44444333
No 458
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=29.73 E-value=2.2e+02 Score=22.89 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=47.5
Q ss_pred HHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhH
Q 010555 432 VEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAF 497 (507)
Q Consensus 432 l~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~ 497 (507)
++....-|.+-|+....-|++.|..|==.-+ -.=-..|.+|.++.......-.....+||.|+.
T Consensus 14 ~~eA~~~l~~fl~~a~~~g~~~v~IIHGkG~--GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~Gat 77 (83)
T 2zqe_A 14 VAEALLEVDQALEEARALGLSTLRLLHGKGT--GALRQAIREALRRDKRVESFADAPPGEGGHGVT 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECCSTT--SHHHHHHHHHHHHCTTEEEEEECCTTTTGGGEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCc--hHHHHHHHHHHhcCCceeEEEEcCcccCCCEEE
Confidence 3455678999999999999999999976543 466677888888765433344556788999974
No 459
>2lf6_A Effector protein hopab1; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=29.66 E-value=51 Score=28.56 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=30.2
Q ss_pred HHHHHHhhhhccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCC
Q 010555 156 LAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLT 212 (507)
Q Consensus 156 laA~iDn~i~~~n~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt 212 (507)
|-+++++||.|.. ..++...+.|+-.||....+..+|
T Consensus 40 Lr~Al~~~i~~~~--------------------piP~Di~raL~~vGI~p~id~~~S 76 (101)
T 2lf6_A 40 LRTSLGRYIMSLE--------------------PLPPDLRRALESVGINPFIPEELS 76 (101)
T ss_dssp HHHHHHHHHSSSC--------------------CCCHHHHHHHHHHTCCSCCCTTTT
T ss_pred HHHHHHHHHHhcC--------------------CCCHHHHHHHHcCCCCCCCcchHH
Confidence 6788999999874 356788899999999988877654
No 460
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=29.66 E-value=22 Score=33.02 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=17.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHh
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTV 91 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttI 91 (507)
+.|..+.+.| |-|.||||+--
T Consensus 29 ~~Ge~~~iiG----~nGsGKSTLl~ 49 (235)
T 3tif_A 29 KEGEFVSIMG----PSGSGKSTMLN 49 (235)
T ss_dssp CTTCEEEEEC----STTSSHHHHHH
T ss_pred cCCCEEEEEC----CCCCcHHHHHH
Confidence 5699999988 78999999743
No 461
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=29.63 E-value=19 Score=32.50 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=19.0
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+|+++|+ -|.||||.+--|++.|
T Consensus 2 ~I~l~G~----~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGP----NGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECC----TTSCHHHHHHHHHHHH
T ss_pred EEEEECC----CCCCHHHHHHHHHHHh
Confidence 5777774 6999999998888777
No 462
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=29.50 E-value=1e+02 Score=29.82 Aligned_cols=39 Identities=10% Similarity=0.056 Sum_probs=27.6
Q ss_pred CcEEEEecCCC-----CCCHHHHHHHHHHHHHcCCCeEEEccccc
Q 010555 451 ANVVVAVNMFA-----TDSKAELNAVRNAAMAAGAFDAVVCSHHA 490 (507)
Q Consensus 451 vpvVVAiN~F~-----tDT~aEi~~v~~~~~~~G~~~~~~s~~wa 490 (507)
+.+|++-+.+. .+++++++.|.++|++.|+. +++-+.|.
T Consensus 202 ~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~-li~DE~~~ 245 (439)
T 3dxv_A 202 IGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGIL-VVCDEVKV 245 (439)
T ss_dssp EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCE-EEEECTTT
T ss_pred EEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCE-EEEecccc
Confidence 34444444444 34777799999999999996 67777765
No 463
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=29.43 E-value=1.4e+02 Score=29.04 Aligned_cols=58 Identities=16% Similarity=0.039 Sum_probs=40.9
Q ss_pred HHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010555 432 VEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 432 l~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~w 489 (507)
.+..++.+.++|+-+++.|..|.+..=-...-+++.+..+.+.+.++|+..+.+++.-
T Consensus 116 ~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~ 173 (293)
T 3ewb_X 116 RAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDAGATVINIPDTV 173 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 3455667888999999999998876642222235555666666778999888888754
No 464
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=29.42 E-value=1e+02 Score=27.71 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=38.9
Q ss_pred hhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccc
Q 010555 437 VNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHA 490 (507)
Q Consensus 437 ~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa 490 (507)
..+++.|+..+.+|.+.||.- + ..+.++.+.+.|++.|+. +.+-+|+.
T Consensus 91 ~~~~~~i~~A~~lGa~~v~~~---~--~~~~~~~l~~~a~~~gv~-l~~En~~~ 138 (262)
T 3p6l_A 91 SDWEKMFKFAKAMDLEFITCE---P--ALSDWDLVEKLSKQYNIK-ISVHNHPQ 138 (262)
T ss_dssp THHHHHHHHHHHTTCSEEEEC---C--CGGGHHHHHHHHHHHTCE-EEEECCSS
T ss_pred HHHHHHHHHHHHcCCCEEEec---C--CHHHHHHHHHHHHHhCCE-EEEEeCCC
Confidence 367889999999999999973 3 246788899999999996 77777753
No 465
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=29.16 E-value=47 Score=33.17 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=29.5
Q ss_pred hhhhhhc-CCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 58 SVLDELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 58 ~~l~~~~-~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
.-|+++- .-+.|.+|+|+| +-|.||||.+.-++..+. .-|.+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG----~pG~GKTt~al~ia~~~a-~~g~~ 76 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGA----RPSMGKTSLMMNMVLSAL-NDDRG 76 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEE----CTTSCHHHHHHHHHHHHH-HTTCE
T ss_pred hHHHHHhcCCCCCcEEEEEe----CCCCCHHHHHHHHHHHHH-HcCCe
Confidence 3444432 236799999999 468999999999888773 43433
No 466
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=28.94 E-value=1.1e+02 Score=27.68 Aligned_cols=55 Identities=15% Similarity=0.057 Sum_probs=36.3
Q ss_pred HHHHhhhHHHHHHHHhccCCcEEEEecCCCC--CCHHH-------HHHHHHHHHHcCCCeEEEcc
Q 010555 432 VEAGCVNLARHIANTKAYGANVVVAVNMFAT--DSKAE-------LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 432 l~~G~~NL~~HIen~~~fGvpvVVAiN~F~t--DT~aE-------i~~v~~~~~~~G~~~~~~s~ 487 (507)
.++....+++.|+..+.+|.+.||..--.+. ++++. ++.+.+.|++.|+. +.+-+
T Consensus 88 r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~ 151 (269)
T 3ngf_A 88 EQEFRDNVDIALHYALALDCRTLHAMSGITEGLDRKACEETFIENFRYAADKLAPHGIT-VLVEP 151 (269)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEECCBCBCTTSCHHHHHHHHHHHHHHHHHHHGGGTCE-EEECC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEee
Confidence 4567778999999999999999886321232 22222 33455566778996 66653
No 467
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=28.75 E-value=85 Score=25.95 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=33.5
Q ss_pred hHHHHHHHHh----ccCCcEEEEecCCCCCCHHHHHHHHHHHHHc-----CCCeEEEccccccCchhhHHHHHhhh
Q 010555 438 NLARHIANTK----AYGANVVVAVNMFATDSKAELNAVRNAAMAA-----GAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 438 NL~~HIen~~----~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~-----G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++...++.+. ..++|+++++|+-.-..+.+.+.+.+..... +.. +..++ ++=|+|-.+|-+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~ 175 (183)
T 1moz_A 103 TASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWS-IVASS--AIKGEGITEGLDWLI 175 (183)
T ss_dssp HHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEE-EEEEB--GGGTBTHHHHHHHHH
T ss_pred HHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceE-EEEcc--CCCCcCHHHHHHHHH
Confidence 3444444444 3689999999997643322223333332211 222 33333 455677777665554
No 468
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=28.68 E-value=35 Score=34.72 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=25.4
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
-+.|-|||.| ||||||-=|++.| ...|++
T Consensus 118 ~~vI~VTGTn------GKTTTt~ml~~iL-~~~G~~ 146 (475)
T 1p3d_A 118 RHGIAVAGTH------GKTTTTAMISMIY-TQAKLD 146 (475)
T ss_dssp SEEEEEESSS------CHHHHHHHHHHHH-HHTTCC
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HhCCCC
Confidence 3789999987 9999999999999 477876
No 469
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=28.67 E-value=1.4e+02 Score=24.38 Aligned_cols=57 Identities=19% Similarity=0.115 Sum_probs=33.4
Q ss_pred HHHHhccCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCC--------CeEEEccccccCchhhHHHHHhhh
Q 010555 443 IANTKAYGANVVVAVNMFATDS--KAELNAVRNAAMAAGA--------FDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 443 Ien~~~fGvpvVVAiN~F~tDT--~aEi~~v~~~~~~~G~--------~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
++.++..++|+++++|+..-.. .+++ .+..++.+. ..+..+. ++=|+|-.+|-+.++
T Consensus 100 l~~~~~~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~gv~~l~~~l~ 166 (178)
T 2lkc_A 100 INHAKAANVPIIVAINKMDKPEANPDRV---MQELMEYNLVPEEWGGDTIFCKLS--AKTKEGLDHLLEMIL 166 (178)
T ss_dssp HHHHGGGSCCEEEEEETTTSSCSCHHHH---HHHHTTTTCCBTTTTSSEEEEECC--SSSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEECccCCcCCHHHH---HHHHHhcCcChhHcCCcccEEEEe--cCCCCCHHHHHHHHH
Confidence 4556678999999999976543 2333 233232221 1233333 566788887776654
No 470
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=28.52 E-value=57 Score=32.14 Aligned_cols=57 Identities=14% Similarity=-0.009 Sum_probs=41.2
Q ss_pred HHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHh
Q 010555 440 ARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVR 502 (507)
Q Consensus 440 ~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~ 502 (507)
..|++.+.+.|+|+|+.-=-| ++++++.|+++|++ .. ++.+..|+-|=-=-..|++.
T Consensus 102 ~~~~~~~l~~Gv~vViGTTG~---~~e~~~~L~~aa~~--~~-~~~a~N~SiGv~ll~~l~~~ 158 (288)
T 3ijp_A 102 VLYANYAAQKSLIHIIGTTGF---SKTEEAQIADFAKY--TT-IVKSGNMSLGVNLLANLVKR 158 (288)
T ss_dssp HHHHHHHHHHTCEEEECCCCC---CHHHHHHHHHHHTT--SE-EEECSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCC---CHHHHHHHHHHhCc--CC-EEEECCCcHHHHHHHHHHHH
Confidence 345666777899999976555 57889999999986 43 67889998876554444443
No 471
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=28.28 E-value=21 Score=31.93 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=20.0
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.+-||++| |.|.||||++..+++.+
T Consensus 39 ~~~vll~G----~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLG----PPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEES----CTTSSHHHHHHHHHHHH
T ss_pred CceEEEEC----CCCCCHHHHHHHHHHHh
Confidence 34578877 67999999998888776
No 472
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=28.02 E-value=64 Score=31.67 Aligned_cols=43 Identities=28% Similarity=0.274 Sum_probs=31.0
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lRePSl 114 (507)
+++..|.++| |-|.||||+.--|+..+. .-+.+..+.-..|+-
T Consensus 72 ~~~~~v~lvG----~pgaGKSTLln~L~~~~~-~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSG----PPGAGKSTFIEYFGKMLT-ERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEEC----CTTSSHHHHHHHHHHHHH-HTTCCEEEEECCC--
T ss_pred cCceEEEEEc----CCCCCHHHHHHHHHHHhh-hcCCeEEEEeecCCC
Confidence 3466777777 459999999999998884 556666666666654
No 473
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=27.94 E-value=1.4e+02 Score=28.21 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHcCCCeEEEccccc
Q 010555 465 KAELNAVRNAAMAAGAFDAVVCSHHA 490 (507)
Q Consensus 465 ~aEi~~v~~~~~~~G~~~~~~s~~wa 490 (507)
.++++.|.++|++.|+. +++-+.|+
T Consensus 203 ~~~l~~l~~l~~~~~~~-li~De~~~ 227 (397)
T 2ord_A 203 KEFLEEARKLCDEYDAL-LVFDEVQC 227 (397)
T ss_dssp HHHHHHHHHHHHHHTCE-EEEECTTT
T ss_pred HHHHHHHHHHHHHcCCE-EEEEeccc
Confidence 78999999999999996 77777775
No 474
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=27.92 E-value=96 Score=30.60 Aligned_cols=53 Identities=15% Similarity=0.054 Sum_probs=43.1
Q ss_pred hhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010555 437 VNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 437 ~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~w 489 (507)
.+...+++.++++|+.+++.+=-.+.-+++.+..+.+.+.+.|+..+.+++.-
T Consensus 120 ~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i~l~DT~ 172 (345)
T 1nvm_A 120 DVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMADSG 172 (345)
T ss_dssp GGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEECTT
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCc
Confidence 46788999999999999988755555668888888888999999877777653
No 475
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=27.87 E-value=47 Score=35.71 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=34.0
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~~lReP 112 (507)
-|||+||+ =|-.+-|||+++-+|+.-| .+.|.++..-=-||
T Consensus 3 ~~~i~v~g--g~~s~~gk~~~~~~l~~~l-~~~g~~v~~~k~~p 43 (545)
T 1s1m_A 3 TNYIFVTG--GVVSSLGKGIAAASLAAIL-EARGLNVTIMKLDP 43 (545)
T ss_dssp CEEEEEEE--CSSSCSCHHHHHHHHHHHH-HTTTCCEEEEEEEC
T ss_pred ceEEEEeC--CcccCcchHHHHHHHHHHH-HhCCceeeeeeccc
Confidence 38999994 2567899999999999999 68899987766664
No 476
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=27.86 E-value=97 Score=26.71 Aligned_cols=60 Identities=8% Similarity=-0.026 Sum_probs=35.0
Q ss_pred HHHHHh-ccCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhh
Q 010555 442 HIANTK-AYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRML 504 (507)
Q Consensus 442 HIen~~-~fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~ 504 (507)
.+...+ ..++|+|++.|+..-..+. .++..+.++...++. +..+. ++=|+|-.+|-+.++
T Consensus 105 ~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~-~~e~S--A~~g~~v~~lf~~l~ 167 (192)
T 2cjw_A 105 QLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXK-FIETS--AAVQHNVKELFEGIV 167 (192)
T ss_dssp HHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECB--TTTTBSHHHHHHHHH
T ss_pred HHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCc-eEEec--cccCCCHHHHHHHHH
Confidence 344443 3589999999997542221 223345667777774 44443 455677766655543
No 477
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=27.66 E-value=38 Score=34.19 Aligned_cols=30 Identities=30% Similarity=0.189 Sum_probs=25.8
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk 103 (507)
++.++|-|||.| |||||+-=|.+.| ...|+
T Consensus 98 ~~~~vI~VTGTn------GKTTT~~~l~~iL-~~~g~ 127 (454)
T 2am1_A 98 TTVDVFAVTGSN------GKTTTKDMLAHLL-STRYK 127 (454)
T ss_dssp HCCEEEEEECCC------SSSCHHHHHHHHH-TTTSC
T ss_pred CCCCEEEEeCCC------CcHHHHHHHHHHH-HhcCC
Confidence 367899999987 9999999999999 47775
No 478
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=27.51 E-value=22 Score=33.98 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.0
Q ss_pred EEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 72 VVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++++| |.|.||||++.-|++.|.
T Consensus 49 ~ll~G----p~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYG----PPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEEC----SSSSSHHHHHHHHHHHHH
T ss_pred EEEEC----CCCCCHHHHHHHHHHHHc
Confidence 67776 789999999999999984
No 479
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1
Probab=27.47 E-value=1.5e+02 Score=28.45 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=37.2
Q ss_pred hHHHHHHHHhccCCcEEEEec-CCCCCCHHHHHHHHHHHHHcCCCeEEEcccccc-Cchh
Q 010555 438 NLARHIANTKAYGANVVVAVN-MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAH-GGKG 495 (507)
Q Consensus 438 NL~~HIen~~~fGvpvVVAiN-~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~-GGeG 495 (507)
++.+=.+-.+.+|+|+=|.+- -+. |++|+....+.|.++|+..+-.|+.|.. ||.-
T Consensus 121 ei~~v~~a~~~~g~~lKvIlEt~~L--~~e~i~~a~ria~eaGADfVKTsTG~~~~~gAt 178 (234)
T 1n7k_A 121 EVSGIVKLAKSYGAVVKVILEAPLW--DDKTLSLLVDSSRRAGADIVKTSTGVYTKGGDP 178 (234)
T ss_dssp HHHHHHHHHHHTTCEEEEECCGGGS--CHHHHHHHHHHHHHTTCSEEESCCSSSCCCCSH
T ss_pred HHHHHHHHHhhcCCeEEEEEeccCC--CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCC
Confidence 444434445568888744444 344 4799999999999999974445556775 6544
No 480
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=27.29 E-value=34 Score=34.57 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=18.1
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGL 93 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL 93 (507)
+.|.++.+.| |-|.||||+---|
T Consensus 28 ~~Ge~~~llG----psGsGKSTLLr~i 50 (359)
T 3fvq_A 28 DPGEILFIIG----ASGCGKTTLLRCL 50 (359)
T ss_dssp CTTCEEEEEE----STTSSHHHHHHHH
T ss_pred cCCCEEEEEC----CCCchHHHHHHHH
Confidence 4688888888 7799999985433
No 481
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=27.29 E-value=34 Score=34.61 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=25.9
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCC
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk 103 (507)
.+.++|-|||.| |||||+-=|.+.| ...|+
T Consensus 98 ~~~~vI~VTGTn------GKTTT~~~l~~iL-~~~g~ 127 (452)
T 1gg4_A 98 VPARVVALTGSS------GKTSVKEMTAAIL-SQCGN 127 (452)
T ss_dssp SCCEEEEEECSS------CHHHHHHHHHHHH-TTTSC
T ss_pred CCCCEEEEeCCC------CcHHHHHHHHHHH-HhcCC
Confidence 357899999987 9999999999999 57785
No 482
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=27.28 E-value=1.1e+02 Score=32.00 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=38.5
Q ss_pred hhHHHHHHHHhccCCcEEEEecCCCCCC---HHHHHHHHHHHHHcCCCeEEEcccc
Q 010555 437 VNLARHIANTKAYGANVVVAVNMFATDS---KAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 437 ~NL~~HIen~~~fGvpvVVAiN~F~tDT---~aEi~~v~~~~~~~G~~~~~~s~~w 489 (507)
.|+...|+-+++.|..|.+.+ .|..++ .+.+-.+.+.+.++|+..+.+|+.-
T Consensus 127 ~ni~~~i~~ak~~G~~v~~~i-~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l~DT~ 181 (464)
T 2nx9_A 127 RNMQQALQAVKKMGAHAQGTL-CYTTSPVHNLQTWVDVAQQLAELGVDSIALKDMA 181 (464)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-ECCCCTTCCHHHHHHHHHHHHHTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHCCCEEEEEE-EeeeCCCCCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 589999999999999999888 454443 4444445555568999877787754
No 483
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=27.22 E-value=36 Score=32.70 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=22.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|.+++++| |.|.||||++.-|+...
T Consensus 105 ~~G~i~~i~G----~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFG----EFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEEC----CCCCCHhHHHHHHHHHH
Confidence 5689999998 57999999998776543
No 484
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=27.18 E-value=57 Score=31.58 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=41.6
Q ss_pred HHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHh
Q 010555 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVR 502 (507)
Q Consensus 439 L~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~ 502 (507)
...|++.+.+.|+|+|+.-=-| ++++++.|+++|++ .. ++.+..|+-|=-=...|++.
T Consensus 86 ~~~~~~~al~~G~~vVigTTG~---s~~~~~~L~~aa~~--~~-vv~a~N~s~Gv~l~~~~~~~ 143 (272)
T 4f3y_A 86 TLVHLDAALRHDVKLVIGTTGF---SEPQKAQLRAAGEK--IA-LVFSANMSVGVNVTMKLLEF 143 (272)
T ss_dssp HHHHHHHHHHHTCEEEECCCCC---CHHHHHHHHHHTTT--SE-EEECSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEECCCC---CHHHHHHHHHHhcc--CC-EEEECCCCHHHHHHHHHHHH
Confidence 3456667778899999864445 57889999999986 33 67889998886555555443
No 485
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=27.15 E-value=1.7e+02 Score=27.41 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=38.0
Q ss_pred HHHhhhHHHHHHHHhccCCcEEEEecCCC-CCCHHHH-------HHHHHHHHHcCCCe-EEEcccc
Q 010555 433 EAGCVNLARHIANTKAYGANVVVAVNMFA-TDSKAEL-------NAVRNAAMAAGAFD-AVVCSHH 489 (507)
Q Consensus 433 ~~G~~NL~~HIen~~~fGvpvVVAiN~F~-tDT~aEi-------~~v~~~~~~~G~~~-~~~s~~w 489 (507)
++....+++.|+..+.+|.+.||+- -.+ .++++++ ..+.+.|++.|+.- ..+-+|+
T Consensus 104 ~~~~~~~~~~i~~A~~lG~~~v~~~-~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~~l~~En~~ 168 (303)
T 3l23_A 104 PKIMEYWKATAADHAKLGCKYLIQP-MMPTITTHDEAKLVCDIFNQASDVIKAEGIATGFGYHNHN 168 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEC-SCCCCCSHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEC-CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcceEEEccCc
Confidence 4557789999999999999999873 222 2455554 34556777889940 4454553
No 486
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=27.11 E-value=1.3e+02 Score=27.10 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=31.8
Q ss_pred HHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 010555 443 IANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 486 (507)
Q Consensus 443 Ien~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s 486 (507)
-+.++++|+.+ ++++-+...+.++++...+.|++.|++. ++.
T Consensus 69 ~~~l~~~gl~i-~~~~~~~~~~~~~~~~~i~~A~~lGa~~-v~~ 110 (262)
T 3p6l_A 69 KELAASKGIKI-VGTGVYVAEKSSDWEKMFKFAKAMDLEF-ITC 110 (262)
T ss_dssp HHHHHHTTCEE-EEEEEECCSSTTHHHHHHHHHHHTTCSE-EEE
T ss_pred HHHHHHcCCeE-EEEeccCCccHHHHHHHHHHHHHcCCCE-EEe
Confidence 34567899975 4566666667889999999999999984 444
No 487
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=27.04 E-value=91 Score=28.36 Aligned_cols=65 Identities=12% Similarity=0.088 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHh---ccCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhh
Q 010555 436 CVNLARHIANTK---AYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRM 503 (507)
Q Consensus 436 ~~NL~~HIen~~---~fGvpvVVAiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v 503 (507)
|.|+.+.++.++ .-++|+|++.|+-.-..+. ..+...++|++.|+. +..+. |+=|+|-.+|=+.+
T Consensus 101 f~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~-~~e~S--Aktg~nV~e~F~~i 170 (216)
T 4dkx_A 101 FQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIETS--AKAGYNVKQLFRRV 170 (216)
T ss_dssp HHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEEB--TTTTBSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCe-eEEEe--CCCCcCHHHHHHHH
Confidence 334545454444 3579999999996432221 234567889999996 55444 56677766654443
No 488
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=27.03 E-value=25 Score=35.14 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=20.2
Q ss_pred CCcEEEEeccCCCCCCCCcchhHhhHHH
Q 010555 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 68 ~GklIlVTaitPTP~GEGKTTttIGL~q 95 (507)
.|+-||.|| |.|.||||++..|.+
T Consensus 146 ~g~gvli~G----~sG~GKStlal~l~~ 169 (312)
T 1knx_A 146 FGVGVLLTG----RSGIGKSECALDLIN 169 (312)
T ss_dssp TTEEEEEEE----SSSSSHHHHHHHHHT
T ss_pred CCEEEEEEc----CCCCCHHHHHHHHHH
Confidence 588888888 689999999988754
No 489
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=27.02 E-value=39 Score=34.62 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=25.5
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~ 104 (507)
-+.|-|||.+ ||||||-=|++.| ...|++
T Consensus 119 ~~vI~VTGTn------GKTTTt~ml~~iL-~~~G~~ 147 (491)
T 2f00_A 119 RHGIAIAGTH------GKTTTTAMVSSIY-AEAGLD 147 (491)
T ss_dssp SEEEEEESSS------CHHHHHHHHHHHH-HHTTCC
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HhCCCC
Confidence 4789999987 9999999999999 477876
No 490
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=27.01 E-value=22 Score=32.69 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.5
Q ss_pred EEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
-||++| |.|.||||++.-|++.+.
T Consensus 49 ~~ll~G----~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 49 SFLFLG----PTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEES----CSSSSHHHHHHHHHHHHH
T ss_pred EEEEEC----CCCcCHHHHHHHHHHHHc
Confidence 577777 679999999999999984
No 491
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=26.97 E-value=24 Score=36.89 Aligned_cols=48 Identities=27% Similarity=0.417 Sum_probs=31.7
Q ss_pred cccCceeeechh---hhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 47 LYGKYKAKVLLS---VLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 47 ~YG~~kAKi~l~---~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.||....|-.+. .+..+...-.|+.+++.| |-|.||||++.-|+..++
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~G----p~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAG----PPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEES----SSSSSHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEEC----CCCCCHHHHHHHHHHhcC
Confidence 466555544432 223333334688888887 679999999998888874
No 492
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=26.97 E-value=35 Score=32.24 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=21.5
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.++-||++| |-|.||||++..|+..+
T Consensus 47 ~~~~~vLL~G----p~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYG----PPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEEC----SSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEEC----CCCcCHHHHHHHHHHHh
Confidence 4567788887 67999999988877665
No 493
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=26.79 E-value=38 Score=31.62 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=22.2
Q ss_pred CCCcEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GklIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
++.|+|++-| |-|.||||.+-=|++-+
T Consensus 27 ~k~kiI~llG----pPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLG----GPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEEC----CTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEEC----CCCCCHHHHHHHHHHHH
Confidence 4678999887 67999999987777766
No 494
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=26.75 E-value=1.4e+02 Score=27.53 Aligned_cols=43 Identities=5% Similarity=0.013 Sum_probs=29.8
Q ss_pred CCcEEEEecC-CCCCCHHHHHHHHHHHHHcCCCeEEEccccccCc
Q 010555 450 GANVVVAVNM-FATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGG 493 (507)
Q Consensus 450 GvpvVVAiN~-F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GG 493 (507)
....|+..|- .++=+-.+++.|.++|++.|+. +++-+.|+.|.
T Consensus 171 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-li~Dea~~~~~ 214 (397)
T 3f9t_A 171 DVDGIIGIAGTTELGTIDNIEELSKIAKENNIY-IHVDAAFGGLV 214 (397)
T ss_dssp CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCE-EEEECTTGGGT
T ss_pred CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCe-EEEEccccchh
Confidence 4556665552 3444445688999999999996 77878887543
No 495
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=26.36 E-value=24 Score=32.25 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=20.5
Q ss_pred CcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GklIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++=||++| |.|.||||++..+++.++
T Consensus 50 ~~~vll~G----~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIG----PTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEEC----CTTSSHHHHHHHHHHHHT
T ss_pred CceEEEEC----CCCCCHHHHHHHHHHHhC
Confidence 34566765 679999999999988873
No 496
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=26.23 E-value=1.3e+02 Score=28.31 Aligned_cols=43 Identities=21% Similarity=0.121 Sum_probs=30.9
Q ss_pred CCcEEEEecCC-CC---CCHHHHHHHHHHHHHcCCCeEEEccccccCc
Q 010555 450 GANVVVAVNMF-AT---DSKAELNAVRNAAMAAGAFDAVVCSHHAHGG 493 (507)
Q Consensus 450 GvpvVVAiN~F-~t---DT~aEi~~v~~~~~~~G~~~~~~s~~wa~GG 493 (507)
+...|+..|-. ++ =+.++++.|.++|++.|+. +++-+.|+.++
T Consensus 179 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~-li~Dea~~~~~ 225 (407)
T 3nra_A 179 GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGAT-VIADQLYSRLR 225 (407)
T ss_dssp TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCE-EEEECTTTTSB
T ss_pred CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCE-EEEEccccccc
Confidence 45566655542 22 2578899999999999996 77888887654
No 497
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=26.14 E-value=2.4e+02 Score=24.87 Aligned_cols=65 Identities=22% Similarity=0.150 Sum_probs=46.0
Q ss_pred HHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHH----HHHHHHHHHHHcCCCeEEEccccccCchhhH
Q 010555 433 EAGCVNLARHIANTKAYGANVVVAVNMFATDSKA----ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAF 497 (507)
Q Consensus 433 ~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~a----Ei~~v~~~~~~~G~~~~~~s~~wa~GGeGa~ 497 (507)
+....-|.+-|.....-|+..|-.|==.-+-++. =-..|.+|+++.-.....-.....+||.||.
T Consensus 58 ~EA~~~L~~fL~~a~~~g~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~f~~a~~~~GG~Gat 126 (137)
T 3qd7_X 58 EECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGAC 126 (137)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEEEEEECCGGGTGGGEE
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCceeEEeecCccCCCCEEE
Confidence 5566788999999999999999999766665543 4456677777654432333445678999974
No 498
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=26.09 E-value=21 Score=31.32 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=18.6
Q ss_pred cEEEEeccCCCCCCCCcchhHhhHHHHH
Q 010555 70 YYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 70 klIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
..|.+|+ |.|.||||++--|++.|
T Consensus 4 ~~i~i~G----~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDG----PAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEEC----CTTSSHHHHHHHHHHHT
T ss_pred eEEEEEC----CCCCCHHHHHHHHHHhc
Confidence 4677776 46999999988887665
No 499
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}
Probab=26.08 E-value=1.3e+02 Score=27.31 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=35.1
Q ss_pred hhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555 437 VNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH 505 (507)
Q Consensus 437 ~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~ 505 (507)
.=+.++++-.+++|+||++=. .+..+|+ .+.+++.+...+++ ||-.| ..+.++++++
T Consensus 126 ~~f~~~~~la~~~~lPv~iH~----~~a~~~~---~~il~~~~~~~~v~--H~~~g---~~~~~~~~~~ 182 (272)
T 2y1h_A 126 QVLIRQIQLAKRLNLPVNVHS----RSAGRPT---INLLQEQGAEKVLL--HAFDG---RPSVAMEGVR 182 (272)
T ss_dssp HHHHHHHHHHHHHTCCEEEEC----TTCHHHH---HHHHHHTTCCSEEE--ETCCS---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcEEEEe----CCcHHHH---HHHHHhCCCCCEEE--EccCC---CHHHHHHHHH
Confidence 467889999999999999743 2444443 24445555433444 76544 3466666553
No 500
>3tl8_B Effector protein hopab2; plant immunity, solanum lycopersicum, triggered immunity, bacterial pathogenesis, transferase-LIG complex; HET: TPO; 2.50A {Pseudomonas syringae PV}
Probab=26.06 E-value=67 Score=28.44 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=29.9
Q ss_pred HHHHHHhhhhccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCC
Q 010555 156 LAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLT 212 (507)
Q Consensus 156 laA~iDn~i~~~n~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt 212 (507)
|-+++++||.|.. ..++...+.|+-.||....++.++
T Consensus 57 LraAle~~im~~~--------------------piP~Di~raL~~VGI~P~id~~~S 93 (117)
T 3tl8_B 57 LRTALERHVMQRL--------------------PIPLDIGSALQNVGINPSIDLGES 93 (117)
T ss_dssp HHHHHHHHHTTCC--------------------CCCHHHHHHHHHTTCCCCCCCCSC
T ss_pred HHHHHHHHHHhcC--------------------CCCHHHHHHHHhCCCCCCCcchHH
Confidence 6788999999874 356788889999999988777654
Done!