BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010556
(507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 133/298 (44%), Gaps = 50/298 (16%)
Query: 36 SGVLGVDVISFG---NESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRL------- 85
+G +G D+++ N S LV +F EN + + +GI+GL L
Sbjct: 78 TGFVGEDLVTIPKGFNTSFLVNIATIFESENFFLPGI---KWNGILGLAYATLAKPSSSL 134
Query: 86 -SVVDQLVEKGVISDSFSL--CYGGMDVGG-----GAMVLGGITPPPDMVFSHSDPFRSP 137
+ D LV + I + FS+ C G+ V G G++VLGGI P D + +P
Sbjct: 135 ETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPS----LYKGDIWYTP 190
Query: 138 -----YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKE 192
YY IE+ +L + G+ L + R ++ ++DSGTT LP F A +A+ +
Sbjct: 191 IKEEWYYQIEILKLEIGGQSLNLDCREYNADKA-IVDSGTTLLRLPQKVFDAVVEAVARA 249
Query: 193 THVLKRIRGPDPNYDDICFSGAGRDVSELSKT----FPQVDMVFGNGQ-----KLTLSPE 243
+ + P + D ++G+ S+T FP++ + + ++T+ P+
Sbjct: 250 SLI--------PEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQ 301
Query: 244 NYLFRHMKVSGAYCLGIFQNSDSTT--LLGGIVVRNTLVTYDRGNDKVGFWKTNCSEL 299
Y+ M Y F S ST ++G V+ V +DR +VGF + C+E+
Sbjct: 302 LYIQPMMGAGLNYECYRFGISPSTNALVIGATVMEGFYVIFDRAQKRVGFAASPCAEI 359
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 124/308 (40%), Gaps = 53/308 (17%)
Query: 6 QALKCNPDCNCDNDRKECIYERRYAEMSTS------SGVLGVDVISFGNESELVPQRAVF 59
+L C+ D N N +E E+S + +G+LG D + G S+ +F
Sbjct: 46 SSLACS-DHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISD---TNQIF 101
Query: 60 GCENLETGD-LYTQRADGIMGLG------RGRLSVVDQLVEKGVIS-DSFSLCYGGMDVG 111
G E G LY DGI+GL G V D L ++G++S D FS+ D
Sbjct: 102 GLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS 161
Query: 112 GGAMVLGGITPPPDMVFSHSDPFRSP-----YYNIELKELRVAGKPLKVSPRIFDGGHGT 166
G ++LGGI D + P Y+ I L + + G+ + S GG
Sbjct: 162 GSVVLLGGI----DSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACS-----GGCQA 212
Query: 167 VLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFP 226
++D+GT+ P A A + + G N D G V S
Sbjct: 213 IVDTGTSLLTGPTSAIANIQSDI-----------GASENSD-------GEMVISCSSIAS 254
Query: 227 QVDMVFG-NGQKLTLSPENYLFRHMK--VSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYD 283
D+VF NG + LSP Y+ + SG + + +S +LG + +R +D
Sbjct: 255 LPDIVFTINGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 284 RGNDKVGF 291
R N+KVG
Sbjct: 315 RANNKVGL 322
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 124/308 (40%), Gaps = 53/308 (17%)
Query: 6 QALKCNPDCNCDNDRKECIYERRYAEMSTS------SGVLGVDVISFGNESELVPQRAVF 59
+L C+ D N N +E E+S + +G+LG D + G S+ +F
Sbjct: 46 SSLACS-DHNQFNPDDSSTFEATXQELSITYGTGSMTGILGYDTVQVGGISD---TNQIF 101
Query: 60 GCENLETGD-LYTQRADGIMGLG------RGRLSVVDQLVEKGVIS-DSFSLCYGGMDVG 111
G E G LY DGI+GL G V D L ++G++S D FS+ D
Sbjct: 102 GLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS 161
Query: 112 GGAMVLGGITPPPDMVFSHSDPFRSP-----YYNIELKELRVAGKPLKVSPRIFDGGHGT 166
G ++LGGI D + P Y+ I L + + G+ + S GG
Sbjct: 162 GSVVLLGGI----DSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACS-----GGCQA 212
Query: 167 VLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFP 226
++D+GT+ P A A + + G N D G V S
Sbjct: 213 IVDTGTSLLTGPTSAIANIQSDI-----------GASENSD-------GEMVISCSSIDS 254
Query: 227 QVDMVFG-NGQKLTLSPENYLFRHMK--VSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYD 283
D+VF NG + LSP Y+ + SG + + +S +LG + +R +D
Sbjct: 255 LPDIVFTINGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 284 RGNDKVGF 291
R N+KVG
Sbjct: 315 RANNKVGL 322
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 124/308 (40%), Gaps = 53/308 (17%)
Query: 6 QALKCNPDCNCDNDRKECIYERRYAEMSTS------SGVLGVDVISFGNESELVPQRAVF 59
+L C+ D N N +E E+S + +G+LG D + G S+ +F
Sbjct: 46 SSLACS-DHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISD---TNQIF 101
Query: 60 GCENLETGD-LYTQRADGIMGLG------RGRLSVVDQLVEKGVIS-DSFSLCYGGMDVG 111
G E G LY DGI+GL G V D L ++G++S D FS+ D
Sbjct: 102 GLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS 161
Query: 112 GGAMVLGGITPPPDMVFSHSDPFRSP-----YYNIELKELRVAGKPLKVSPRIFDGGHGT 166
G ++LGGI D + P Y+ I L + + G+ + S GG
Sbjct: 162 GSVVLLGGI----DSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACS-----GGCQA 212
Query: 167 VLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFP 226
++D+GT+ P A A + + G N D G V S
Sbjct: 213 IVDTGTSLLTGPTSAIANIQSDI-----------GASENSD-------GEMVISCSSIDS 254
Query: 227 QVDMVFG-NGQKLTLSPENYLFRHMK--VSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYD 283
D+VF NG + LSP Y+ + SG + + +S +LG + +R +D
Sbjct: 255 LPDIVFTINGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 284 RGNDKVGF 291
R N+KVG
Sbjct: 315 RANNKVGL 322
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 124/308 (40%), Gaps = 53/308 (17%)
Query: 6 QALKCNPDCNCDNDRKECIYERRYAEMSTS------SGVLGVDVISFGNESELVPQRAVF 59
+L C+ D N N +E E+S + +G+LG D + G S+ +F
Sbjct: 90 SSLACS-DHNQFNPDDSSTFEATXQELSITYGTGSMTGILGYDTVQVGGISD---TNQIF 145
Query: 60 GCENLETGD-LYTQRADGIMGLG------RGRLSVVDQLVEKGVIS-DSFSLCYGGMDVG 111
G E G LY DGI+GL G V D L ++G++S D FS+ D
Sbjct: 146 GLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS 205
Query: 112 GGAMVLGGITPPPDMVFSHSDPFRSP-----YYNIELKELRVAGKPLKVSPRIFDGGHGT 166
G ++LGGI D + P Y+ I L + + G+ + S GG
Sbjct: 206 GSVVLLGGI----DSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACS-----GGCQA 256
Query: 167 VLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFP 226
++D+GT+ P A A + + G N D G V S
Sbjct: 257 IVDTGTSLLTGPTSAIANIQSDI-----------GASENSD-------GEMVISCSSIDS 298
Query: 227 QVDMVFG-NGQKLTLSPENYLFRHMK--VSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYD 283
D+VF +G + LSP Y+ + SG + + +S +LG + +R +D
Sbjct: 299 LPDIVFTIDGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 358
Query: 284 RGNDKVGF 291
R N+KVG
Sbjct: 359 RANNKVGL 366
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 124/308 (40%), Gaps = 53/308 (17%)
Query: 6 QALKCNPDCNCDNDRKECIYERRYAEMSTS------SGVLGVDVISFGNESELVPQRAVF 59
+L C+ D N N +E E+S + +G+LG D + G S+ +F
Sbjct: 90 SSLACS-DHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISD---TNQIF 145
Query: 60 GCENLETGD-LYTQRADGIMGLG------RGRLSVVDQLVEKGVIS-DSFSLCYGGMDVG 111
G E G LY DGI+GL G V D L ++G++S D FS+ D
Sbjct: 146 GLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS 205
Query: 112 GGAMVLGGITPPPDMVFSHSDPFRSP-----YYNIELKELRVAGKPLKVSPRIFDGGHGT 166
G ++LGGI D + P Y+ I L + + G+ + S GG
Sbjct: 206 GSVVLLGGI----DSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACS-----GGCQA 256
Query: 167 VLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFP 226
++D+GT+ P A A + + G N D G V S
Sbjct: 257 IVDTGTSLLTGPTSAIANIQSDI-----------GASENSD-------GEMVISCSSIDS 298
Query: 227 QVDMVFG-NGQKLTLSPENYLFRHMK--VSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYD 283
D+VF +G + LSP Y+ + SG + + +S +LG + +R +D
Sbjct: 299 LPDIVFTIDGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 358
Query: 284 RGNDKVGF 291
R N+KVG
Sbjct: 359 RANNKVGL 366
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 124/308 (40%), Gaps = 53/308 (17%)
Query: 6 QALKCNPDCNCDNDRKECIYERRYAEMSTS------SGVLGVDVISFGNESELVPQRAVF 59
+L C+ D N N +E E+S + +G+LG D + G S+ +F
Sbjct: 46 SSLACS-DHNQFNPDDSSTFEATXQELSITYGTGSMTGILGYDTVQVGGISD---TNQIF 101
Query: 60 GCENLETGD-LYTQRADGIMGLG------RGRLSVVDQLVEKGVIS-DSFSLCYGGMDVG 111
G E G LY DGI+GL G V D L ++G++S D FS+ D
Sbjct: 102 GLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS 161
Query: 112 GGAMVLGGITPPPDMVFSHSDPFRSP-----YYNIELKELRVAGKPLKVSPRIFDGGHGT 166
G ++LGGI D + P Y+ I L + + G+ + S GG
Sbjct: 162 GSVVLLGGI----DSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACS-----GGCQA 212
Query: 167 VLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFP 226
++D+GT+ P A A + + G N D G V S
Sbjct: 213 IVDTGTSLLTGPTSAIANIQSDI-----------GASENSD-------GEMVISCSSIDS 254
Query: 227 QVDMVFG-NGQKLTLSPENYLFRHMK--VSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYD 283
D+VF +G + LSP Y+ + SG + + +S +LG + +R +D
Sbjct: 255 LPDIVFTIDGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 284 RGNDKVGF 291
R N+KVG
Sbjct: 315 RANNKVGL 322
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 124/308 (40%), Gaps = 53/308 (17%)
Query: 6 QALKCNPDCNCDNDRKECIYERRYAEMSTS------SGVLGVDVISFGNESELVPQRAVF 59
+L C+ D N N +E E+S + +G+LG D + G S+ +F
Sbjct: 46 SSLACS-DHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISD---TNQIF 101
Query: 60 GCENLETGD-LYTQRADGIMGLG------RGRLSVVDQLVEKGVIS-DSFSLCYGGMDVG 111
G E G LY DGI+GL G V D L ++G++S D FS+ D
Sbjct: 102 GLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS 161
Query: 112 GGAMVLGGITPPPDMVFSHSDPFRSP-----YYNIELKELRVAGKPLKVSPRIFDGGHGT 166
G ++LGGI D + P Y+ I L + + G+ + S GG
Sbjct: 162 GSVVLLGGI----DSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACS-----GGCQA 212
Query: 167 VLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFP 226
++D+GT+ P A A + + G N D G V S
Sbjct: 213 IVDTGTSLLTGPTSAIANIQSDI-----------GASENSD-------GEMVISCSSIDS 254
Query: 227 QVDMVFG-NGQKLTLSPENYLFRHMK--VSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYD 283
D+VF +G + LSP Y+ + SG + + +S +LG + +R +D
Sbjct: 255 LPDIVFTIDGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 284 RGNDKVGF 291
R N+KVG
Sbjct: 315 RANNKVGL 322
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 123/322 (38%), Gaps = 44/322 (13%)
Query: 2 SNTYQALKCNPDCNCDNDRKEC-IYERRYAEMSTSSGVLGVDVISF----GNESELVPQR 56
+NT+Q L C + C + T G LG DV++ G+ +L P
Sbjct: 73 ANTHQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLV 132
Query: 57 AV----FGCE-NLETGDLYTQRADGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGGMDVG 111
V F C + + G+ GLG +S+ +QL + F+ C
Sbjct: 133 TVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTS 192
Query: 112 GGAMVLGGITPPPDM-VFSHSDPFR----SPY-------YNIELKELRVAGK---PL-KV 155
GA++ G P +M F + D F +P YN+ + +R+ PL K+
Sbjct: 193 KGAIIFGDA--PNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKI 250
Query: 156 SPRIFDGGH-GTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGA 214
S I GT++ + T + L + AF ++ +++ P +CF+
Sbjct: 251 SSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAP--FGLCFN-- 306
Query: 215 GRDVSELSKTFPQVDMVFG--NGQKLTLSPENYLFRHMKVSGAYCLGIFQ---NSDSTTL 269
S +P VD+V NG +S E+ + + G CLG+ +
Sbjct: 307 ----SNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQP--GVTCLGVMNGGMQPRAEIT 360
Query: 270 LGGIVVRNTLVTYDRGNDKVGF 291
LG + LV +D +VGF
Sbjct: 361 LGARQLEENLVVFDLARSRVGF 382
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 120/289 (41%), Gaps = 34/289 (11%)
Query: 36 SGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------V 87
+G LG D++S + + + + + + +GI+GL ++
Sbjct: 97 AGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPF 156
Query: 88 VDQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 157 FDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRRE 216
Query: 138 -YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVL 196
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ +
Sbjct: 217 WYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTE 275
Query: 197 KRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMK 251
K G +C+ + FP + + V ++T+ P+ YL
Sbjct: 276 KFPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVED 331
Query: 252 VSGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
V+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 332 VATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 120/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + ++ + + + + +GI+GL ++
Sbjct: 79 GELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIARPDDSLEPFF 138
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 139 DSLVKQTHVPNLFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 198
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 199 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 257
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 258 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTQQSFRITILPQQYLRPVEDV 313
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 314 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 360
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 120/289 (41%), Gaps = 34/289 (11%)
Query: 36 SGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------V 87
+G LG D++S + + + + + + +GI+GL ++
Sbjct: 93 AGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPF 152
Query: 88 VDQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 153 FDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRRE 212
Query: 138 -YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVL 196
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ +
Sbjct: 213 WYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTE 271
Query: 197 KRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMK 251
K G +C+ + FP + + V ++T+ P+ YL
Sbjct: 272 KFPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVED 327
Query: 252 VSGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
V+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 328 VATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 120/289 (41%), Gaps = 34/289 (11%)
Query: 36 SGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------V 87
+G LG D++S + + + + + + +GI+GL ++
Sbjct: 97 AGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPF 156
Query: 88 VDQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 157 FDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRRE 216
Query: 138 -YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVL 196
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ +
Sbjct: 217 WYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTE 275
Query: 197 KRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMK 251
K G +C+ + FP + + V ++T+ P+ YL
Sbjct: 276 KFPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVED 331
Query: 252 VSGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
V+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 332 VATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 120/289 (41%), Gaps = 34/289 (11%)
Query: 36 SGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------V 87
+G LG D++S + + + + + + +GI+GL ++
Sbjct: 103 AGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPF 162
Query: 88 VDQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 163 FDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRRE 222
Query: 138 -YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVL 196
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ +
Sbjct: 223 WYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTE 281
Query: 197 KRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMK 251
K G +C+ + FP + + V ++T+ P+ YL
Sbjct: 282 KFPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVED 337
Query: 252 VSGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
V+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 338 VATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 385
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 98 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 157
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 158 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 217
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 276
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 277 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 332
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 333 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 120/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + ++ + + + + +GI+GL ++
Sbjct: 81 GELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIARPDDSLEPFF 140
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 141 DSLVKQTHVPNLFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 200
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 201 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 259
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 260 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTQQSFRITILPQQYLRPVEDV 315
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 316 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 362
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 120/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + ++ + + + + +GI+GL ++
Sbjct: 78 GELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIARPDDSLEPFF 137
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 138 DSLVKQTHVPNLFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 197
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 198 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 256
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 257 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTQQSFRITILPQQYLRPVEDV 312
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 313 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 359
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 98 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 157
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 158 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 217
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 276
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 277 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 332
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 333 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 99 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 158
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 159 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 218
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 219 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 277
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 278 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 333
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 334 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 380
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 96 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 155
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 156 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 215
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 216 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 274
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 275 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 330
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 331 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 377
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 99 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 158
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 159 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 218
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 219 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 277
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 278 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 333
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 334 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 380
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 120/289 (41%), Gaps = 34/289 (11%)
Query: 36 SGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------V 87
+G LG D++S + + + + + + +GI+GL ++
Sbjct: 117 AGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPF 176
Query: 88 VDQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 177 FDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRRE 236
Query: 138 -YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVL 196
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ +
Sbjct: 237 WYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTE 295
Query: 197 KRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMK 251
K G +C+ + FP + + V ++T+ P+ YL
Sbjct: 296 KFPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVED 351
Query: 252 VSGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
V+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 352 VATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 399
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 98 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 157
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 158 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 217
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 276
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 277 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 332
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 333 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 101 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 160
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 161 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 220
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 221 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 279
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 280 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 335
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 336 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 382
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 84 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 143
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 144 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 203
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 204 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 262
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 263 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 318
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 319 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 97 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 156
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 157 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 216
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 217 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 275
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 276 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 331
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 332 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 84 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 143
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 144 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 203
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 204 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 262
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 263 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 318
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 319 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 79 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 138
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 139 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 198
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 199 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 257
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 258 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 313
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 314 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 360
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 82 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 141
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 142 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 201
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 202 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 260
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 261 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 316
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 317 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 94 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 153
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 154 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 213
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 214 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 272
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 273 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 328
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 329 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 84 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 143
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 144 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 203
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 204 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 262
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 263 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 318
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 319 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 97 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 156
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 157 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 216
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 217 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 275
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 276 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 331
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 332 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 95 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 154
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 155 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 214
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 215 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 273
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 274 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 329
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 330 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 376
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 97 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 156
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 157 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 216
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 217 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 275
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 276 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 331
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 332 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 94 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 153
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 154 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 213
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 214 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 272
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 273 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 328
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 329 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 81 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 140
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 141 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 200
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 201 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 259
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 260 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 315
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 316 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 362
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 85 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 144
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 145 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 204
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 205 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 263
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 264 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 319
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 320 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 366
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 118 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 177
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 178 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 237
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 238 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 296
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 297 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 352
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 353 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 399
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 87 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 146
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 147 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 206
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 207 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 265
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 266 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 321
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 322 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 368
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 94 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 153
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 154 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 213
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 214 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 272
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 273 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 328
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 329 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 83 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 142
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 143 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 202
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 203 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 261
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 262 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 317
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 318 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 364
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 82 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 141
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 142 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 201
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 202 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 260
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 261 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 316
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 317 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 82 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 141
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 142 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 201
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 202 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 260
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 261 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 316
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 317 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 82 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 141
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 142 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 201
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 202 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 260
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 261 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 316
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 317 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 94 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 153
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 154 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 213
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 214 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVASIKAASSTEK 272
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 273 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 328
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 329 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 87 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 146
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 147 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 206
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 207 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 265
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 266 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 321
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 322 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 368
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 82 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 141
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 142 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 201
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 202 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 260
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 261 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 316
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 317 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 118/288 (40%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 98 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 157
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 158 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 217
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 276
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 277 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 332
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T +G +++ V +DR ++GF + C
Sbjct: 333 ATSQDDCYKFAISQSS-TGTCMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 118/288 (40%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 98 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 157
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 158 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 217
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 276
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 277 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 332
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S T++G +++ V +DR ++GF + C
Sbjct: 333 ATSQDDCYKFAISQSS-CGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 141 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 200
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 201 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 260
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 261 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 319
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 320 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 375
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 376 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 422
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 106/272 (38%), Gaps = 46/272 (16%)
Query: 36 SGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLG------RGRLSVV 88
+G+LG D + G S+ +FG E G LY DGI+GL G V
Sbjct: 81 TGILGYDTVQVGGISD---TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVF 137
Query: 89 DQLVEKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPPDMVFSHSDPFRSP-----YYNIE 142
D + +G++S D FS+ D G ++ GGI D + P Y+ I
Sbjct: 138 DNIWNQGLVSQDLFSVYLSADDQSGSVVIFGGI----DSSYYTGSLNWVPVTVEGYWQIT 193
Query: 143 LKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGP 202
+ + + G+ + + G ++D+GT+ P A + + G
Sbjct: 194 VDSITMNGEAIACAE-----GCQAIVDTGTSLLTGPTSPIANIQSDI-----------GA 237
Query: 203 DPNYDDICFSGAGRDVSELSKTFPQVDMVFG-NGQKLTLSPENYLFRHMK--VSGAYCLG 259
N D G V S D+VF NG + + P Y+ + +SG +
Sbjct: 238 SENSD-------GDMVVSCSAISSLPDIVFTINGVQYPVPPSAYILQSEGSCISGFQGMN 290
Query: 260 IFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGF 291
+ S +LG + +R +DR N++VG
Sbjct: 291 VPTESGELWILGDVFIRQYFTVFDRANNQVGL 322
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 140 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 199
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 200 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 259
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 260 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 318
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 319 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 374
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 375 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 421
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 105/274 (38%), Gaps = 43/274 (15%)
Query: 56 RAVFGC------ENLETGDLYTQRADGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGGMD 109
R +F C +NL +G + G+ GLGR R+++ Q F++C G
Sbjct: 133 RFIFSCAPTSLLQNLASGVV------GMAGLGRTRIALPSQFASAFSFKRKFAMCLSGST 186
Query: 110 VGGGAMVLGG--ITPPPDMVFSHSDPFRSPY-------------------YNIELKELRV 148
++ G T P+++ S +P Y I +K +++
Sbjct: 187 SSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKI 246
Query: 149 AGKPLKVSPRIFD----GGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDP 204
K + ++ + G GT + + Y L + A +A IKE+ R
Sbjct: 247 NSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASV 306
Query: 205 NYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKL-TLSPENYLFRHMKVSGAYCLGIF-- 261
CFS + L + P +D+V + + T++ N + CLG+
Sbjct: 307 APFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIND--NVVCLGVVDG 364
Query: 262 -QNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294
N ++ ++GG + + LV +D +VGF T
Sbjct: 365 GSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGT 398
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------VV 88
G LG D++S + + + + + + +GI+GL ++
Sbjct: 141 GELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 200
Query: 89 DQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP- 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 201 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREW 260
Query: 138 YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 197
YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ + K
Sbjct: 261 YYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 319
Query: 198 RIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMKV 252
G +C+ + FP + + V ++T+ P+ YL V
Sbjct: 320 FPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV 375
Query: 253 SGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 376 ATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 422
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 119/289 (41%), Gaps = 34/289 (11%)
Query: 36 SGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLS--------V 87
+G LG D++S + + + + + + +GI+GL ++
Sbjct: 97 AGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPF 156
Query: 88 VDQLVEKGVISDSFSL--CYGGMDVG--------GGAMVLGGITPPPDMVFSHSDPFRSP 137
D LV++ + + FSL C G + GG+M++GGI P R
Sbjct: 157 FDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRRE 216
Query: 138 -YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVL 196
YY + + + + G+ LK+ + ++ +++DSG T LP F A ++ +
Sbjct: 217 WYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGCTNLRLPKKVFEAAVKSIKAASSTE 275
Query: 197 KRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRHMK 251
K G +C+ + FP + + V ++T+ P+ YL
Sbjct: 276 KFPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVED 331
Query: 252 VSGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
V+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 332 VATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 105/274 (38%), Gaps = 43/274 (15%)
Query: 56 RAVFGC------ENLETGDLYTQRADGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGGMD 109
R +F C +NL +G + G+ GLGR R+++ Q F++C G
Sbjct: 133 RFIFSCAPTSLLQNLASGVV------GMAGLGRTRIALPSQFASAFSFKRKFAMCLSGST 186
Query: 110 VGGGAMVLGG--ITPPPDMVFSHSDPFRSPY-------------------YNIELKELRV 148
++ G T P+++ S +P Y I +K +++
Sbjct: 187 SSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKI 246
Query: 149 AGKPLKVSPRIFD----GGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDP 204
K + ++ + G GT + + Y L + A +A IKE+ R
Sbjct: 247 NSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASV 306
Query: 205 NYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKL-TLSPENYLFRHMKVSGAYCLGIF-- 261
CFS + L + P +D+V + + T++ N + CLG+
Sbjct: 307 APFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIND--NVVCLGVVDG 364
Query: 262 -QNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294
N ++ ++GG + + LV +D +VGF T
Sbjct: 365 GSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGT 398
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 106/272 (38%), Gaps = 46/272 (16%)
Query: 36 SGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLG------RGRLSVV 88
+G+LG D + G S+ +FG E G LY DGI+GL G V
Sbjct: 81 TGILGYDTVQVGGISD---TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVF 137
Query: 89 DQLVEKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPPDMVFSHSDPFRSP-----YYNIE 142
D + +G++S D FS+ D G ++ GGI D + P Y+ I
Sbjct: 138 DNIWNQGLVSQDLFSVYLSADDQSGSVVIFGGI----DSSYYTGSLNWVPVTVEGYWQIT 193
Query: 143 LKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGP 202
+ + + G+ + + G ++D+GT+ P A + + G
Sbjct: 194 VDSITMNGEAIACAE-----GCQAIVDTGTSLLTGPTSPIANIQSDI-----------GA 237
Query: 203 DPNYDDICFSGAGRDVSELSKTFPQVDMVFG-NGQKLTLSPENYLFRHMK--VSGAYCLG 259
N D G V S D+VF NG + + P Y+ + +SG +
Sbjct: 238 SENSD-------GDMVVSCSAISSLPDIVFTINGVQYPVPPSAYILQSEGSCISGFQGMN 290
Query: 260 IFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGF 291
+ S +LG + +R +DR N++VG
Sbjct: 291 LPTESGELWILGDVFIRQYFTVFDRANNQVGL 322
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 120/317 (37%), Gaps = 69/317 (21%)
Query: 12 PDCNCDNDRKECIYER-------------------RYAEMSTSSGVLGVDVISFGNESEL 52
P C C+Y + RY+ T SG L D+I+ G
Sbjct: 47 PSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYST-GTVSGFLSQDIITVGG---- 101
Query: 53 VPQRAVFG-CENLETGDLYTQRADGIMGLGR-----GRLS-VVDQLVEKGVISDSFSLCY 105
+ +FG + DG++G+G GR++ + D ++ +GV+ + Y
Sbjct: 102 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 161
Query: 106 GGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGH 164
D GG +VLGG P + F + + ++ + I++K + V L + + G
Sbjct: 162 YNRDSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTL-----LCEDGC 216
Query: 165 GTVLDSGTTYAYLPGHAFAAFKDALIKET----HVLKRIRGPDPNYDDICFSGAGRDVSE 220
++D+G +Y + +AL + +V+K GP
Sbjct: 217 LALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGP------------------ 258
Query: 221 LSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSD------STTLLGGIV 274
T P + G G++ TL+ +Y+F+ S C D T LG
Sbjct: 259 ---TLPDISFHLG-GKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATF 314
Query: 275 VRNTLVTYDRGNDKVGF 291
+R +DR N+++GF
Sbjct: 315 IRKFYTEFDRRNNRIGF 331
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 107/266 (40%), Gaps = 38/266 (14%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRA-DGIMGLG------RGRLSVVD 89
G+LG D +S G S+ P + + G E G DGI+GL G + V D
Sbjct: 82 GILGQDTVSVGGGSD--PNQEL-GESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFD 138
Query: 90 QLVEKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPPDMVFSHSDPFRS-PYYNIELKELR 147
+ + ++ D FS G G ++LGG+ H P + Y+ + L +
Sbjct: 139 NMGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYTGSIHWIPVTAEKYWQVALDGIT 198
Query: 148 VAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYD 207
V G+ G ++D+GT+ P A A +++K I G N
Sbjct: 199 VNGQTAACE------GCQAIVDTGTSKIVAPVSALA----------NIMKDI-GASENQG 241
Query: 208 DICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLF--RHMKVSGAYCLGIFQNSD 265
++ + A ++ P + NG K L P Y+ + SG G+ N+
Sbjct: 242 EMMGNCASV------QSLPDITFTI-NGVKQPLPPSAYIEGDQAFCTSGLGSSGVPSNTS 294
Query: 266 STTLLGGIVVRNTLVTYDRGNDKVGF 291
+ G + +RN YDR N+KVGF
Sbjct: 295 ELWIFGDVFLRNYYTIYDRTNNKVGF 320
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 101/254 (39%), Gaps = 39/254 (15%)
Query: 55 QRAVFGCENLETGDLY-TQRADGIMGLGRGRLSV------VDQLVEKGVISD---SFSLC 104
+R VFG + G + + DGI+G+ R+SV D L+++ ++ SF L
Sbjct: 6 ERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLS 65
Query: 105 YGGMDVGGGAMVLGGI-TPPPDMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGG 163
GG ++LGG + S+ + R Y+ + L ++ VA + G
Sbjct: 66 RDPDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVAS-----GLTLCKEG 120
Query: 164 HGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSK 223
++D+GT+ P + E L++ G P G E
Sbjct: 121 CEAIVDTGTSLMVGP-----------VDEVRELQKAIGAVP-----LIQGEYMIPCEKVS 164
Query: 224 TFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTT------LLGGIVVRN 277
T P + + G G+ LSPE+Y + + CL F D +LG + +
Sbjct: 165 TLPAITLKLG-GKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGR 223
Query: 278 TLVTYDRGNDKVGF 291
+DR N++VGF
Sbjct: 224 YYTVFDRDNNRVGF 237
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/314 (21%), Positives = 120/314 (38%), Gaps = 58/314 (18%)
Query: 12 PDCNCDNDRKECIYER-------------------RYAEMSTSSGVLGVDVISFGNESEL 52
P C C+Y + RY+ T SG L D+I+ G
Sbjct: 90 PSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYST-GTVSGFLSQDIITVGG---- 144
Query: 53 VPQRAVFG-CENLETGDLYTQRADGIMGLGR-----GRLS-VVDQLVEKGVIS-DSFSLC 104
+ +FG + DG++G+G GR++ + D ++ +GV+ D FS
Sbjct: 145 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 204
Query: 105 YG----GMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRI 159
Y GG +VLGG P + F + + ++ + I++K + V L +
Sbjct: 205 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTL-----L 259
Query: 160 FDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPD--PNYDDICFSGAGRD 217
+ G ++D+G +Y + +AL + + + + P DI F G++
Sbjct: 260 CEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKE 319
Query: 218 VSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRN 277
T D VF E+Y + + + + I + T LG +R
Sbjct: 320 Y-----TLTSADYVF---------QESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRK 365
Query: 278 TLVTYDRGNDKVGF 291
+DR N+++GF
Sbjct: 366 FYTEFDRRNNRIGF 379
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 112/277 (40%), Gaps = 53/277 (19%)
Query: 36 SGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLSV------VD 89
+G G D ++ +S VP + EN + + DGIMGL LSV +
Sbjct: 81 TGFFGYDTLTV--QSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQ 138
Query: 90 QLVEKGVISDSFSLCYGGMDVG--GGAMVLGGITPPPDMVFSHSDPFRSP-----YYNIE 142
+V++G ++ Y G GGA+V GG+ D + +P Y+ I
Sbjct: 139 GMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGV----DSSLYTGQIYWAPVTQELYWQIG 194
Query: 143 LKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGP 202
++E + G+ G ++D+GT+ +P + AL++ T + G
Sbjct: 195 IEEFLIGGQASGWCSE----GCQAIVDTGTSLLTVPQQ----YMSALLQATGAQEDEYGQ 246
Query: 203 D-PNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYC-LGI 260
N + I + P + + NG + L P +Y+ + YC +G+
Sbjct: 247 FLVNCNSI-------------QNLPSLTFII-NGVEFPLPPSSYILSN----NGYCTVGV 288
Query: 261 ------FQNSDSTTLLGGIVVRNTLVTYDRGNDKVGF 291
QN +LG + +R+ YD GN++VGF
Sbjct: 289 EPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGF 325
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 121/322 (37%), Gaps = 74/322 (22%)
Query: 12 PDCNCDNDRKECIYER-------------------RYAEMSTSSGVLGVDVISFGNESEL 52
P C C+Y + RY+ T SG L D+I+ G
Sbjct: 40 PSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYS-TGTVSGFLSQDIITVGG---- 94
Query: 53 VPQRAVFG-CENLETGDLYTQRADGIMGLGR-----GRLS-VVDQLVEKGVIS-DSFSLC 104
+ +FG + DG++G+G GR++ + D ++ +GV+ D FS
Sbjct: 95 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 154
Query: 105 YG----GMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRI 159
Y GG +VLGG P + F + + ++ + I++K + V L +
Sbjct: 155 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTL-----L 209
Query: 160 FDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKET----HVLKRIRGPDPNYDDICFSGAG 215
+ G ++D+G +Y + +AL + +V+K GP
Sbjct: 210 CEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGP------------- 256
Query: 216 RDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSD------STTL 269
T P + G G++ TL+ +Y+F+ S C D T
Sbjct: 257 --------TLPDISFHLG-GKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWA 307
Query: 270 LGGIVVRNTLVTYDRGNDKVGF 291
LG +R +DR N+++GF
Sbjct: 308 LGATFIRKFYTEFDRRNNRIGF 329
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 121/322 (37%), Gaps = 74/322 (22%)
Query: 12 PDCNCDNDRKECIYER-------------------RYAEMSTSSGVLGVDVISFGNESEL 52
P C C+Y + RY+ T SG L D+I+ G
Sbjct: 47 PSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYST-GTVSGFLSQDIITVGG---- 101
Query: 53 VPQRAVFG-CENLETGDLYTQRADGIMGLGR-----GRLS-VVDQLVEKGVIS-DSFSLC 104
+ +FG + DG++G+G GR++ + D ++ +GV+ D FS
Sbjct: 102 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 161
Query: 105 YG----GMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRI 159
Y GG +VLGG P + F + + ++ + I++K + V L +
Sbjct: 162 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTL-----L 216
Query: 160 FDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKET----HVLKRIRGPDPNYDDICFSGAG 215
+ G ++D+G +Y + +AL + +V+K GP
Sbjct: 217 CEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGP------------- 263
Query: 216 RDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSD------STTL 269
T P + G G++ TL+ +Y+F+ S C D T
Sbjct: 264 --------TLPDISFHLG-GKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWA 314
Query: 270 LGGIVVRNTLVTYDRGNDKVGF 291
LG +R +DR N+++GF
Sbjct: 315 LGATFIRKFYTEFDRRNNRIGF 336
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 121/322 (37%), Gaps = 74/322 (22%)
Query: 12 PDCNCDNDRKECIYER-------------------RYAEMSTSSGVLGVDVISFGNESEL 52
P C C+Y + RY+ T SG L D+I+ G
Sbjct: 43 PSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYS-TGTVSGFLSQDIITVGG---- 97
Query: 53 VPQRAVFG-CENLETGDLYTQRADGIMGLGR-----GRLS-VVDQLVEKGVIS-DSFSLC 104
+ +FG + DG++G+G GR++ + D ++ +GV+ D FS
Sbjct: 98 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 157
Query: 105 YG----GMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRI 159
Y GG +VLGG P + F + + ++ + I++K + V L +
Sbjct: 158 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTL-----L 212
Query: 160 FDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKET----HVLKRIRGPDPNYDDICFSGAG 215
+ G ++D+G +Y + +AL + +V+K GP
Sbjct: 213 CEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGP------------- 259
Query: 216 RDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSD------STTL 269
T P + G G++ TL+ +Y+F+ S C D T
Sbjct: 260 --------TLPDISFHLG-GKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWA 310
Query: 270 LGGIVVRNTLVTYDRGNDKVGF 291
LG +R +DR N+++GF
Sbjct: 311 LGATFIRKFYTEFDRRNNRIGF 332
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 121/322 (37%), Gaps = 74/322 (22%)
Query: 12 PDCNCDNDRKECIYER-------------------RYAEMSTSSGVLGVDVISFGNESEL 52
P C C+Y + RY+ T SG L D+I+ G
Sbjct: 47 PSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYST-GTVSGFLSQDIITVGG---- 101
Query: 53 VPQRAVFG-CENLETGDLYTQRADGIMGLGR-----GRLS-VVDQLVEKGVIS-DSFSLC 104
+ +FG + DG++G+G GR++ + D ++ +GV+ D FS
Sbjct: 102 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 161
Query: 105 YG----GMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRI 159
Y GG +VLGG P + F + + ++ + I++K + V L +
Sbjct: 162 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTL-----L 216
Query: 160 FDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKET----HVLKRIRGPDPNYDDICFSGAG 215
+ G ++D+G +Y + +AL + +V+K GP
Sbjct: 217 CEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGP------------- 263
Query: 216 RDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSD------STTL 269
T P + G G++ TL+ +Y+F+ S C D T
Sbjct: 264 --------TLPDISFHLG-GKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWA 314
Query: 270 LGGIVVRNTLVTYDRGNDKVGF 291
LG +R +DR N+++GF
Sbjct: 315 LGATFIRKFYTEFDRRNNRIGF 336
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 121/322 (37%), Gaps = 74/322 (22%)
Query: 12 PDCNCDNDRKECIYER-------------------RYAEMSTSSGVLGVDVISFGNESEL 52
P C C+Y + RY+ T SG L D+I+ G
Sbjct: 44 PSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYS-TGTVSGFLSQDIITVGG---- 98
Query: 53 VPQRAVFG-CENLETGDLYTQRADGIMGLGR-----GRLS-VVDQLVEKGVIS-DSFSLC 104
+ +FG + DG++G+G GR++ + D ++ +GV+ D FS
Sbjct: 99 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 158
Query: 105 YG----GMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRI 159
Y GG +VLGG P + F + + ++ + I++K + V L +
Sbjct: 159 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTL-----L 213
Query: 160 FDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKET----HVLKRIRGPDPNYDDICFSGAG 215
+ G ++D+G +Y + +AL + +V+K GP
Sbjct: 214 CEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGP------------- 260
Query: 216 RDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSD------STTL 269
T P + G G++ TL+ +Y+F+ S C D T
Sbjct: 261 --------TLPDISFHLG-GKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWA 311
Query: 270 LGGIVVRNTLVTYDRGNDKVGF 291
LG +R +DR N+++GF
Sbjct: 312 LGATFIRKFYTEFDRRNNRIGF 333
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 106/268 (39%), Gaps = 41/268 (15%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYT-QRADGIMGLGRGRLS------VVD 89
G LG D ++ N +V G + G+++T DGI+GL L+ V D
Sbjct: 81 GFLGYDTVTVSN---IVDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFD 137
Query: 90 QLVEKGVISDSFSLCYGGMDVGGGAMVLGGITPPPDMVFSHSDPFR-SPYYNIELKELRV 148
++++ +++ Y + G + LG I P H P Y+ + + +
Sbjct: 138 NMMDRHLVARDLFSVYMDRNGQGSMLTLGAIDPSYYTGSLHWVPVTLQQYWQFTVDSVTI 197
Query: 149 AGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDD 208
G + GG +LD+GT+ + P + A+ + R D N +
Sbjct: 198 NGVAVACV-----GGCQAILDTGTSVLFGPSSDILKIQMAIGATEN---RYGEFDVNCGN 249
Query: 209 ICFSGAGRDVSELSKTFPQVDMVFG-NGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDST 267
+ ++ P V VF NG+ LSP Y + +C FQ +++
Sbjct: 250 L-------------RSMPTV--VFEINGRDYPLSPSAYTSKDQ----GFCTSGFQGDNNS 290
Query: 268 TL--LGGIVVRNTLVTYDRGNDKVGFWK 293
L LG + +R +DR N++VG K
Sbjct: 291 ELWILGDVFIREYYSVFDRANNRVGLAK 318
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 105/270 (38%), Gaps = 45/270 (16%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYT-QRADGIMGLGRGRLS------VVD 89
G+LG D ++ N +V + G E GD++T DGI+G+ L+ V D
Sbjct: 84 GILGYDTVTVSN---IVDIQQTVGLSTQEPGDVFTYAEFDGILGMAYPSLASEYSIPVFD 140
Query: 90 QLVEKGVISDSFSLCYGGMDVGG--GAMVLGGITPPPDMVFSHSDPFR-SPYYNIELKEL 146
++ + +++ Y MD G + LG I P H P Y+ + +
Sbjct: 141 NMMNRHLVAQDLFSVY--MDRNGQESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSV 198
Query: 147 RVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNY 206
++G + +GG +LD+GT+ P + A+ + D +
Sbjct: 199 TISGVVVAC-----EGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEF---DIDC 250
Query: 207 DDICFSGAGRDVSELSKTFPQVDMVFG-NGQKLTLSPENYLFRHMKVSGAYCLGIFQ--N 263
D++ + P V VF NG+ L+P Y + +C FQ N
Sbjct: 251 DNLSY-------------MPTV--VFEINGKMYPLTPSAYTSQDQ----GFCTSGFQSEN 291
Query: 264 SDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293
+LG + +R +DR N+ VG K
Sbjct: 292 HSQKWILGDVFIREYYSVFDRANNLVGLAK 321
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 104/270 (38%), Gaps = 45/270 (16%)
Query: 37 GVLGVDVISFGNESELVPQRAVFGCENLETGDLYT-QRADGIMGLGRGRLS------VVD 89
G+LG D ++ N +V + G E GD +T DGI+G+ L+ V D
Sbjct: 84 GILGYDTVTVSN---IVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFD 140
Query: 90 QLVEKGVISDSFSLCYGGMDVGG--GAMVLGGITPPPDMVFSHSDPFR-SPYYNIELKEL 146
++ + +++ Y MD G + LG I P H P Y+ + +
Sbjct: 141 NMMNRHLVAQDLFSVY--MDRNGQESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSV 198
Query: 147 RVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNY 206
++G + +GG +LD+GT+ P + A+ + D +
Sbjct: 199 TISGVVVAC-----EGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEF---DIDC 250
Query: 207 DDICFSGAGRDVSELSKTFPQVDMVFG-NGQKLTLSPENYLFRHMKVSGAYCLGIFQ--N 263
D++ + P V VF NG+ L+P Y + +C FQ N
Sbjct: 251 DNLSY-------------MPTV--VFEINGKMYPLTPSAYTSQDQ----GFCTSGFQSEN 291
Query: 264 SDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293
+LG + +R +DR N+ VG K
Sbjct: 292 HSQKWILGDVFIREYYSVFDRANNLVGLAK 321
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 135 RSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETH 194
R YY + + + + G+ LK+ + ++ +++DSGTT LP F A ++ +
Sbjct: 187 REWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPKKVFEAAVKSIKAASS 245
Query: 195 VLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDM-----VFGNGQKLTLSPENYLFRH 249
K G +C+ + FP + + V ++T+ P+ YL
Sbjct: 246 TEKFPDGFWLGEQLVCWQAG----TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV 301
Query: 250 MKVSGA----YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296
V+ + Y I Q+S + T++G +++ V +DR ++GF + C
Sbjct: 302 EDVATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 351
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 104/281 (37%), Gaps = 59/281 (20%)
Query: 36 SGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRA-DGIMGLGRGRLSV------V 88
SG++G D +S + + Q FG E G + DGI+GLG L+V
Sbjct: 92 SGIIGADQVSVEGLTVVGQQ---FGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVF 148
Query: 89 DQLVEKGVISDSFSLCYGGMDVGGGA---MVLGGITPPPDMVFSHSD--------PF-RS 136
D ++ + ++ Y + GGA ++ GG + HS P +
Sbjct: 149 DNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGG--------YDHSHFSGSLNWVPVTKQ 200
Query: 137 PYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVL 196
Y+ I L ++V G + S G ++D+GT+ P ++A+
Sbjct: 201 AYWQIALDNIQVGGTVMFCSE-----GCQAIVDTGTSLITGPSDKIKQLQNAI------- 248
Query: 197 KRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAY 256
G P + A +V P V NG TLSP Y +
Sbjct: 249 ----GAAPVDGEYAVECANLNV------MPDVTFTI-NGVPYTLSPTAYTLLDFVDGMQF 297
Query: 257 CLGIFQNSD------STTLLGGIVVRNTLVTYDRGNDKVGF 291
C FQ D +LG + +R +DRGN++VG
Sbjct: 298 CSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGL 338
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 96/241 (39%), Gaps = 55/241 (22%)
Query: 75 DGIMGLG------RGRLSVVDQLVEKGVISDS-FSLCYG-GMDVGGGAMVLGGITPPPDM 126
DG++G+G G V D ++ +GV+ + FS+ Y G + GG +VLGG
Sbjct: 122 DGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGPHLLGGEVVLGG------- 174
Query: 127 VFSHSDP--FRSPYYNIELK-----ELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPG 179
SDP ++ ++ + L ++ + G + S + + G V+D+G+++ P
Sbjct: 175 ----SDPQHYQGDFHYVSLSKTDSWQITMKGVSVGSSTLLCEEGCEVVVDTGSSFISAPT 230
Query: 180 HAFAAFKDAL-IKETHVLKRIRGPD--PNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQ 236
+ AL KE + + + P DI F+ GR
Sbjct: 231 SSLKLIMQALGAKEKRLHEYVVSCSQVPTLPDISFNLGGR-------------------- 270
Query: 237 KLTLSPENYLFRHMKVSGAYCLGIFQNSD------STTLLGGIVVRNTLVTYDRGNDKVG 290
TLS +Y+ ++ C D +LG +R +DR N+++G
Sbjct: 271 AYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIG 330
Query: 291 F 291
F
Sbjct: 331 F 331
>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|D Chain D, Native Cardosin A From Cynara Cardunculus L
Length = 87
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 217 DVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTL-----LG 271
D + LS + P V G G+K L+PE Y+ + K C+ F D+T L LG
Sbjct: 6 DCNTLS-SMPNVSFTIG-GKKFGLTPEQYILKVGKGEATQCISGFTAMDATLLGPLWILG 63
Query: 272 GIVVRNTLVTYDRGNDKVGF 291
+ +R +D GN VGF
Sbjct: 64 DVFMRPYHTVFDYGNLLVGF 83
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 93/232 (40%), Gaps = 36/232 (15%)
Query: 71 TQRADGIMGLG--RGRLSVVD------QLVEKGVISDS-FSLCYGGMDVGGGAMVLGGIT 121
T GI+G+G G + D L +G+I + +SL + G ++ GGI
Sbjct: 117 TSARKGILGIGFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQIIFGGID 176
Query: 122 PPPDMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHA 181
P S K+L V + + V R D +LDSGTT +Y
Sbjct: 177 KAKYSGSLVDLPITSE------KKLTVGLRSVNVRGRNVDANTNVLLDSGTTISY----- 225
Query: 182 FAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELS-KTFPQVDMVFGNGQKLTL 240
F ++++ ++L I + F AG V KT +D FGN K+++
Sbjct: 226 ---FTRSIVR--NILYAIGA------QMKFDSAGNKVYVADCKTSGTIDFQFGNNLKISV 274
Query: 241 SPENYLFRHMKVSGA---YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKV 289
+LF+ SG C + S+ +LG +R+ V Y+ + K+
Sbjct: 275 PVSEFLFQTYYTSGKPFPKCEVRIRESED-NILGDNFLRSAYVVYNLDDKKI 325
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|B Chain B, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|D Chain D, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 176
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 22/183 (12%)
Query: 112 GGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDS 170
GG +VLGG P + F + + ++ + I++K + V L + + G ++D+
Sbjct: 3 GGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTL-----LCEDGCLALVDT 57
Query: 171 GTTYAYLPGHAFAAFKDALIKETHVLKRIRGPD--PNYDDICFSGAGRDVSELSKTFPQV 228
G +Y + +AL + + + + P DI F G++ T
Sbjct: 58 GASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEY-----TLTSA 112
Query: 229 DMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDK 288
D VF E+Y + + + + I + T LG +R +DR N++
Sbjct: 113 DYVF---------QESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNR 163
Query: 289 VGF 291
+GF
Sbjct: 164 IGF 166
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 106/277 (38%), Gaps = 44/277 (15%)
Query: 29 YAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLY-TQRADGIMGLG-RGRLS 86
Y + S+S G L D + FG S + VF D+ T GI+G+G + +
Sbjct: 84 YGDGSSSQGTLYKDTVGFGGAS---ITKQVFA-------DITKTSIPQGILGIGYKTNEA 133
Query: 87 VVD------QLVEKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPPDMVFSHSDPFRSPYY 139
D L +GVI+ +++SL + G ++ GG+ + P S
Sbjct: 134 AGDYDNVPVTLKNQGVIAKNAYSLYLNSPNAATGQIIFGGVDKAKYSGSLIAVPVTSD-- 191
Query: 140 NIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRI 199
+ELR+ LK + +G +LDSGTT YL DA E LK
Sbjct: 192 ----RELRITLNSLKAVGKNINGNIDVLLDSGTTITYLQQDVAQDIIDAFQAE---LKSD 244
Query: 200 RGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGA---Y 256
Y C +T VD F N K+++ + +G
Sbjct: 245 GQGHTFYVTDC------------QTSGTVDFNFDNNAKISVPASEFTAPLSYANGQPYPK 292
Query: 257 CLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293
C + SD+ +LG +R+ + YD +DK+ +
Sbjct: 293 CQLLLGISDA-NILGDNFLRSAYLVYDLDDDKISLAQ 328
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 102/267 (38%), Gaps = 31/267 (11%)
Query: 25 YERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDL---YTQRADGIMGLG 81
+ RY + STS G G D ++ S Q A +++ G L YT G
Sbjct: 74 FTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQTSVDQGILGIGYTSNEAVYDTSG 133
Query: 82 RGRLSVVDQ----LVEKGVI-SDSFSLCYGGMDVGGGAMVLGGITPPPDMVFSHSDPFRS 136
R D L ++G I ++++SL G ++ GG+ D
Sbjct: 134 RQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTIIFGGV----DNAKYSGKLVAE 189
Query: 137 PYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVL 196
+ + + +A LK S F G G +LDSGTT Y P A D ++
Sbjct: 190 QVTSSQALTISLASVNLKGSSFSF--GDGALLDSGTTLTYFPSDFAAQLADK--AGARLV 245
Query: 197 KRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAY 256
+ R + D +G V FGNG K+T+ Y++++
Sbjct: 246 QVARDQYLYFIDCNTDTSGTTV-----------FNFGNGAKITVPNTEYVYQNGD---GT 291
Query: 257 CLGIFQNSDSTTLLGGIVVRNTLVTYD 283
CL Q SD T+LG +R+ + Y+
Sbjct: 292 CLWGIQPSDD-TILGDNFLRHAYLLYN 317
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 25/162 (15%)
Query: 25 YERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRAD-GIMGLG-- 81
+ Y + +TS G D I FG S Q A D+ + D GI+G+G
Sbjct: 79 FSIEYGDGTTSQGTWYKDTIGFGGISITKQQFA----------DVTSTSVDQGILGIGYK 128
Query: 82 ----RGRLSVVD-QLVEKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPPDMVFSHSDPFR 135
G V L +G+IS +++SL G ++ GG+ + P
Sbjct: 129 THEAEGNYDNVPVTLKNQGIISKNAYSLYLNSRQATSGQIIFGGVDNAKYSGTLIALPVT 188
Query: 136 SPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYL 177
S ELR+ +KV+ + + +LDSGTT YL
Sbjct: 189 SD------NELRIHLNTVKVAGQSINADVDVLLDSGTTITYL 224
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 224 TFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSD------STTLLGGIVVRN 277
+ P ++ G G+K L PE Y+ + + + A C+ F D +LG + +
Sbjct: 402 SMPDIEFTIG-GKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGP 460
Query: 278 TLVTYDRGNDKVGFWKT 294
+D G ++GF K
Sbjct: 461 YHTVFDYGKLRIGFAKA 477
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 30/180 (16%)
Query: 29 YAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRAD-GIMGLGR----- 82
Y + S+S G L D + FG S +N D+ + D GI+G+G
Sbjct: 84 YGDGSSSQGTLYKDTVGFGGVS----------IKNQVLADVDSTSIDQGILGVGYKTNEA 133
Query: 83 --GRLSVVDQLVEKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPPDMVFSHSDPFRSPYY 139
+V L ++GVI+ +++SL D G ++ GG+ + P S
Sbjct: 134 GGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVTSD-- 191
Query: 140 NIELKELRVAGKPLKVSPRIFDGGHGTVL-DSGTTYAY----LPGHAFAAFKDALIKETH 194
+ELR++ ++VS + + + VL DSGTT Y L AF L ++++
Sbjct: 192 ----RELRISLGSVEVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSN 247
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 30/180 (16%)
Query: 29 YAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRAD-GIMGLGR----- 82
Y + S+S G L D + FG S +N D+ + D GI+G+G
Sbjct: 84 YGDGSSSQGTLYKDTVGFGGVS----------IKNQVLADVDSTSIDQGILGVGYKTNEA 133
Query: 83 --GRLSVVDQLVEKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPPDMVFSHSDPFRSPYY 139
+V L ++GVI+ +++SL D G ++ GG+ + P S
Sbjct: 134 GGSYDNVPVTLKKQGVIAKNAYSLYLNSPDSATGQIIFGGVDNAKYSGSLIALPVTSD-- 191
Query: 140 NIELKELRVAGKPLKVSPRIFDGGHGTVL-DSGTTYAY----LPGHAFAAFKDALIKETH 194
+ELR++ ++VS + + + VL DSGTT Y L AF L ++++
Sbjct: 192 ----RELRISLGSVEVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSN 247
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 180 HAFAAFKDALIKETHVLKRIRGPDPNYDDICF--SGAGRDVSELSKTFPQVDMVFGNGQK 237
+A+ K + I++ ++ I+G YD I SG G+ + Q+++ F Q
Sbjct: 46 YAYGFEKPSAIQQRAIIPCIKG----YDVIAQAQSGTGKTATFAISILQQLEIEFKETQA 101
Query: 238 LTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTL 279
L L+P L + ++ LG + + +GG VRN +
Sbjct: 102 LVLAPTRELAQQIQ-KVILALGDYMGATCHACIGGTNVRNEM 142
>pdb|3H53|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase
pdb|3H53|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase
pdb|3H54|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H54|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H55|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3H55|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3IGU|A Chain A, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|3IGU|B Chain B, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|4DO4|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO4|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
Length = 400
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 4 TYQALKCNPDCNCDNDRKECIYERRYAEMS 33
++ +CN NCD D K CI E+ + EM+
Sbjct: 15 AWERFRCN--INCDEDPKNCISEQLFMEMA 42
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 107/280 (38%), Gaps = 57/280 (20%)
Query: 25 YERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLG--- 81
+ Y + S++SG+L D ++ G L+ + E + DG++GLG
Sbjct: 73 WSISYGDGSSASGILAKDNVNLGG---LLIKGQTIELAKREAASFASGPNDGLLGLGFDT 129
Query: 82 ----RGRLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVL-----------GGITPPPDM 126
RG + +D L+ +G+IS Y G GG G +T P
Sbjct: 130 ITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKNGGGGEYIFGGYDSTKFKGSLTTVP-- 187
Query: 127 VFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFK 186
D R ++ I + V + S FDG +LD+GTT LP + A+
Sbjct: 188 ----IDNSRG-WWGITVDRATVGTSTVASS---FDG----ILDTGTTLLILPNNIAAS-- 233
Query: 187 DALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYL 246
+ R G N D G + S+ P V + NG +SP++ +
Sbjct: 234 ---------VARAYGASDNGD-----GTYTISCDTSRFKPLVFSI--NGASFQVSPDSLV 277
Query: 247 FRHMKVSGAYCLGIFQNSD-STTLLGGIVVRNTLVTYDRG 285
F + C+ F + ++G ++N V +++G
Sbjct: 278 FEEFQ---GQCIAGFGYGNWDFAIIGDTFLKNNYVVFNQG 314
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 25 YERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLG--- 81
+ Y + S++SG+L D ++ G L+ + E + DG++GLG
Sbjct: 73 WSISYGDGSSASGILAKDNVNLGG---LLIKGQTIELAKREAASFASGPNDGLLGLGFDT 129
Query: 82 ----RGRLSVVDQLVEKGVIS 98
RG + +D L+ +G+IS
Sbjct: 130 ITTVRGVKTPMDNLISQGLIS 150
>pdb|4GYF|A Chain A, Crystal Structure Of Histidinol Phosphate Phosphatase
(hisk) From Lactococcus Lactis Subsp. Lactis Il1403
Complexed With Zn, L- Histidinol And Phosphate
pdb|4GC3|A Chain A, Crystal Structure Of L-histidinol Phosphate Phosphatase
(hisk) From Lactococcus Lactis Subsp. Lactis Il1403
Complexed With Zn And Sulfate
pdb|4GK8|A Chain A, Crystal Structure Of Histidinol Phosphate Phosphatase
(hisk) From Lactococcus Lactis Subsp. Lactis Il1403
Complexed With Zn And L- Histidinol Arsenate
Length = 284
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 380 DIEVHLLNFSSKGH-DYLVRWGIFPDESDNYISNTTALNIILR 421
D+ + N++S GH DY+ R+G + D+S + N L ILR
Sbjct: 141 DVVQNFENYNSFGHLDYVARYGPYTDKSIKFAENREILFEILR 183
>pdb|3N6L|A Chain A, The Crystal Strucutre Of Rna-Dependent Rna Polymerase Of
Ev71 Virus
pdb|3N6M|A Chain A, Crystal Structure Of Ev71 Rdrp In Complex With Gtp
pdb|3N6N|A Chain A, Crystal Structure Of Ev71 Rdrp In Complex With Br-Utp
Length = 462
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 48 NESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLSVVD 89
N S++ + A +G ENLE DL+T LG + ++D
Sbjct: 91 NTSQMSMEEACYGTENLEAIDLHTSAGYPYSALGIKKRDILD 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,101,322
Number of Sequences: 62578
Number of extensions: 629988
Number of successful extensions: 1543
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 1423
Number of HSP's gapped (non-prelim): 91
length of query: 507
length of database: 14,973,337
effective HSP length: 103
effective length of query: 404
effective length of database: 8,527,803
effective search space: 3445232412
effective search space used: 3445232412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)