Query 010556
Match_columns 507
No_of_seqs 243 out of 1366
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 01:55:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05489 xylanase_inhibitor_I_l 100.0 1.3E-41 2.7E-46 354.9 29.6 291 1-294 29-361 (362)
2 cd05472 cnd41_like Chloroplast 100.0 1.4E-39 3E-44 330.4 31.1 270 3-296 23-299 (299)
3 PLN03146 aspartyl protease fam 100.0 3.5E-39 7.5E-44 343.7 30.9 282 1-298 131-430 (431)
4 KOG1339 Aspartyl protease [Pos 100.0 1.3E-38 2.7E-43 336.5 30.7 286 1-297 94-397 (398)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 4.1E-38 8.8E-43 323.9 26.0 250 1-297 50-326 (326)
6 cd05478 pepsin_A Pepsin A, asp 100.0 6.6E-38 1.4E-42 320.9 26.8 243 21-293 64-317 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 8.2E-38 1.8E-42 321.2 26.7 246 22-293 63-325 (325)
8 PTZ00165 aspartyl protease; Pr 100.0 1.7E-37 3.8E-42 333.6 29.3 246 24-301 182-453 (482)
9 cd05476 pepsin_A_like_plant Ch 100.0 2E-37 4.3E-42 309.7 26.0 224 23-296 31-265 (265)
10 cd05486 Cathespin_E Cathepsin 100.0 1.5E-37 3.2E-42 318.2 25.5 246 21-293 54-316 (316)
11 cd05477 gastricsin Gastricsins 100.0 6.6E-37 1.4E-41 313.5 28.1 245 21-294 57-318 (318)
12 cd05487 renin_like Renin stimu 100.0 6.8E-37 1.5E-41 314.8 28.2 246 21-294 64-326 (326)
13 cd05488 Proteinase_A_fungi Fun 100.0 1E-36 2.2E-41 312.7 26.9 242 21-293 64-320 (320)
14 cd05475 nucellin_like Nucellin 100.0 1.1E-36 2.5E-41 305.8 26.5 237 2-296 23-273 (273)
15 cd05485 Cathepsin_D_like Cathe 100.0 2.2E-36 4.8E-41 311.5 27.2 246 21-293 67-329 (329)
16 cd05474 SAP_like SAPs, pepsin- 100.0 2.1E-36 4.5E-41 305.6 25.9 243 24-294 31-295 (295)
17 cd06098 phytepsin Phytepsin, a 100.0 5E-36 1.1E-40 307.3 27.7 236 21-293 65-317 (317)
18 cd05473 beta_secretase_like Be 100.0 3.2E-35 7E-40 306.8 27.4 289 3-299 25-350 (364)
19 PTZ00147 plasmepsin-1; Provisi 100.0 3.8E-35 8.3E-40 313.3 28.3 244 21-295 193-450 (453)
20 PTZ00013 plasmepsin 4 (PM4); P 100.0 5.6E-35 1.2E-39 311.6 28.7 244 21-295 192-449 (450)
21 PF00026 Asp: Eukaryotic aspar 100.0 2.7E-34 5.9E-39 291.8 20.1 246 22-294 57-317 (317)
22 cd06097 Aspergillopepsin_like 100.0 1.3E-32 2.7E-37 276.8 22.1 212 21-293 55-278 (278)
23 cd05471 pepsin_like Pepsin-lik 100.0 3.7E-31 8.1E-36 263.9 25.8 217 20-293 55-283 (283)
24 PF14541 TAXi_C: Xylanase inhi 99.9 1.9E-23 4.1E-28 194.1 15.2 154 138-293 1-161 (161)
25 PF14543 TAXi_N: Xylanase inhi 99.7 1.7E-16 3.7E-21 148.1 10.4 115 1-119 38-164 (164)
26 cd05470 pepsin_retropepsin_lik 98.4 7.3E-07 1.6E-11 76.7 8.0 56 21-80 53-109 (109)
27 cd05479 RP_DDI RP_DDI; retrope 94.7 0.16 3.6E-06 45.0 8.3 26 265-290 98-123 (124)
28 TIGR02281 clan_AA_DTGA clan AA 93.3 1.5 3.2E-05 38.8 11.4 37 135-185 8-44 (121)
29 TIGR03698 clan_AA_DTGF clan AA 91.8 0.76 1.6E-05 39.8 7.5 25 265-289 83-107 (107)
30 PF01102 Glycophorin_A: Glycop 86.5 0.45 9.7E-06 42.4 2.1 47 455-506 65-113 (122)
31 PF08693 SKG6: Transmembrane a 86.4 0.15 3.2E-06 36.3 -0.8 28 457-484 11-39 (40)
32 PF15330 SIT: SHP2-interacting 84.4 1.3 2.7E-05 38.6 3.8 31 472-506 14-44 (107)
33 PF08284 RVP_2: Retroviral asp 84.1 4.3 9.2E-05 36.7 7.3 98 165-294 34-132 (135)
34 PF15050 SCIMP: SCIMP protein 83.8 0.86 1.9E-05 40.0 2.5 12 450-461 2-13 (133)
35 PF01034 Syndecan: Syndecan do 83.3 0.36 7.9E-06 37.8 0.0 32 458-490 13-44 (64)
36 PF13650 Asp_protease_2: Aspar 81.0 2.3 5E-05 34.3 4.1 29 146-185 3-31 (90)
37 PF12384 Peptidase_A2B: Ty3 tr 79.9 5.2 0.00011 37.5 6.2 85 165-280 47-131 (177)
38 PF01299 Lamp: Lysosome-associ 76.5 1.5 3.3E-05 45.0 2.0 37 454-493 270-306 (306)
39 cd05484 retropepsin_like_LTR_2 76.0 4.5 9.7E-05 33.5 4.4 30 145-185 4-33 (91)
40 PF13975 gag-asp_proteas: gag- 74.5 5 0.00011 32.0 4.1 29 146-185 13-41 (72)
41 cd05483 retropepsin_like_bacte 71.1 7.3 0.00016 31.6 4.5 30 145-185 6-35 (96)
42 cd06095 RP_RTVL_H_like Retrope 65.2 9.2 0.0002 31.4 3.9 29 146-185 3-31 (86)
43 cd06094 RP_Saci_like RP_Saci_l 64.8 59 0.0013 27.4 8.5 20 162-181 8-27 (89)
44 cd05483 retropepsin_like_bacte 64.3 12 0.00027 30.3 4.6 53 22-82 42-94 (96)
45 PF15179 Myc_target_1: Myc tar 63.6 5.1 0.00011 37.9 2.2 36 452-488 18-53 (197)
46 PF04478 Mid2: Mid2 like cell 61.4 3.1 6.6E-05 38.4 0.4 31 454-485 49-79 (154)
47 PF11770 GAPT: GRB2-binding ad 60.4 4 8.7E-05 37.4 0.9 27 457-483 10-36 (158)
48 PF12751 Vac7: Vacuolar segreg 57.3 6.5 0.00014 41.5 2.0 57 445-502 292-348 (387)
49 PF06697 DUF1191: Protein of u 54.2 15 0.00033 37.2 4.0 95 379-483 136-242 (278)
50 PF14979 TMEM52: Transmembrane 54.0 12 0.00026 34.2 2.9 31 455-485 21-51 (154)
51 PF02160 Peptidase_A3: Caulifl 53.3 33 0.00071 33.3 5.9 53 223-293 65-117 (201)
52 PRK15348 type III secretion sy 52.4 8.2 0.00018 38.7 1.7 32 450-483 216-247 (249)
53 PF00077 RVP: Retroviral aspar 51.9 17 0.00037 30.2 3.4 26 145-181 9-34 (100)
54 COG2976 Uncharacterized protei 50.2 10 0.00023 36.6 2.0 34 448-485 14-47 (207)
55 KOG3653 Transforming growth fa 50.0 21 0.00046 38.9 4.4 40 467-506 165-213 (534)
56 PF13268 DUF4059: Protein of u 49.8 17 0.00037 29.2 2.8 29 462-490 12-40 (72)
57 COG3577 Predicted aspartyl pro 49.4 34 0.00074 33.3 5.3 38 134-185 101-138 (215)
58 COG0245 IspF 2C-methyl-D-eryth 49.0 40 0.00086 31.4 5.4 49 341-391 87-135 (159)
59 KOG0012 DNA damage inducible p 48.9 75 0.0016 33.4 8.0 40 256-295 308-347 (380)
60 KOG1031 Predicted Ca2+-depende 48.3 6.4 0.00014 43.4 0.2 29 426-454 443-481 (1169)
61 PF12273 RCR: Chitin synthesis 47.7 17 0.00037 32.4 2.9 24 462-485 6-29 (130)
62 COG5550 Predicted aspartyl pro 46.2 16 0.00034 32.7 2.3 20 166-185 29-49 (125)
63 PF02817 E3_binding: e3 bindin 45.9 9.4 0.0002 27.0 0.7 22 363-384 3-24 (39)
64 PTZ00382 Variant-specific surf 45.3 9.6 0.00021 32.5 0.8 8 456-463 68-75 (96)
65 cd05481 retropepsin_like_LTR_1 44.8 26 0.00057 29.4 3.4 22 165-186 12-33 (93)
66 PF02542 YgbB: YgbB family; I 44.6 58 0.0013 30.3 5.9 49 342-392 88-136 (157)
67 PF05393 Hum_adeno_E3A: Human 44.3 30 0.00065 29.0 3.5 21 476-496 50-72 (94)
68 PF12768 Rax2: Cortical protei 44.2 23 0.0005 36.1 3.5 45 457-501 230-274 (281)
69 PF11743 DUF3301: Protein of u 41.4 8 0.00017 33.0 -0.3 34 472-505 8-41 (97)
70 PF09668 Asp_protease: Asparty 39.3 37 0.0008 30.4 3.6 30 145-185 28-57 (124)
71 PF02594 DUF167: Uncharacteris 39.3 24 0.00052 28.8 2.3 21 366-386 43-63 (77)
72 PF13650 Asp_protease_2: Aspar 38.9 1.9E+02 0.0041 22.7 7.7 50 23-81 40-89 (90)
73 PF06365 CD34_antigen: CD34/Po 38.2 1.1E+02 0.0024 29.7 6.9 104 368-485 25-130 (202)
74 PF14991 MLANA: Protein melan- 36.1 11 0.00023 33.1 -0.3 25 459-483 27-51 (118)
75 PF14316 DUF4381: Domain of un 35.0 27 0.00059 31.8 2.2 22 468-491 30-51 (146)
76 TIGR03063 srtB_target sortase 34.9 36 0.00078 22.6 2.1 10 474-483 20-29 (29)
77 PF11669 WBP-1: WW domain-bind 33.1 28 0.00061 30.0 1.8 13 471-483 34-46 (102)
78 TIGR01167 LPXTG_anchor LPXTG-m 30.8 47 0.001 22.1 2.3 10 475-484 24-33 (34)
79 PRK10525 cytochrome o ubiquino 30.7 21 0.00046 37.0 0.8 40 453-492 40-80 (315)
80 PF12191 stn_TNFRSF12A: Tumour 30.6 17 0.00036 32.5 -0.0 26 467-494 90-115 (129)
81 PRK01530 hypothetical protein; 29.7 41 0.00089 29.2 2.2 33 366-402 56-88 (105)
82 PF06305 DUF1049: Protein of u 29.4 53 0.0011 25.4 2.7 22 452-474 14-35 (68)
83 PF13703 PepSY_TM_2: PepSY-ass 28.7 59 0.0013 26.8 3.0 32 462-493 21-52 (88)
84 KOG1094 Discoidin domain recep 28.6 66 0.0014 36.3 4.1 73 399-488 349-421 (807)
85 PF15330 SIT: SHP2-interacting 28.5 69 0.0015 27.9 3.5 33 457-490 3-35 (107)
86 PF12877 DUF3827: Domain of un 28.3 1.6E+02 0.0035 33.4 7.0 108 379-492 188-303 (684)
87 PF02009 Rifin_STEVOR: Rifin/s 27.3 49 0.0011 34.1 2.7 20 175-194 30-49 (299)
88 PF14828 Amnionless: Amnionles 27.1 3.3E+02 0.0071 29.7 9.1 111 344-464 231-345 (437)
89 PRK09459 pspG phage shock prot 27.0 61 0.0013 26.4 2.6 19 473-491 55-73 (76)
90 PF13807 GNVR: G-rich domain o 26.3 76 0.0017 25.7 3.2 53 416-470 21-73 (82)
91 PRK05090 hypothetical protein; 25.8 56 0.0012 27.8 2.4 21 366-386 49-69 (95)
92 PF06679 DUF1180: Protein of u 25.2 88 0.0019 29.4 3.7 25 482-506 121-145 (163)
93 KOG4243 Macrophage maturation- 24.6 14 0.0003 36.5 -1.7 50 429-485 98-147 (298)
94 PF07589 VPEP: PEP-CTERM motif 24.6 81 0.0017 20.1 2.4 8 467-474 11-18 (25)
95 TIGR02866 CoxB cytochrome c ox 24.5 48 0.001 31.8 2.0 25 462-486 18-42 (201)
96 cd00554 MECDP_synthase MECDP_s 24.5 1.8E+02 0.004 27.0 5.6 49 342-392 87-135 (153)
97 PF11119 DUF2633: Protein of u 23.6 1.1E+02 0.0025 23.7 3.4 32 472-504 28-59 (59)
98 PF01282 Ribosomal_S24e: Ribos 23.0 2.9E+02 0.0064 22.8 6.1 49 354-402 3-54 (84)
99 TIGR03778 VPDSG_CTERM VPDSG-CT 22.8 75 0.0016 20.6 1.9 13 472-484 13-25 (26)
100 PRK00084 ispF 2-C-methyl-D-ery 22.4 2.1E+02 0.0046 26.7 5.7 49 342-392 90-138 (159)
101 TIGR03503 conserved hypothetic 22.1 23 0.0005 37.5 -0.8 21 461-484 353-373 (374)
102 PF11694 DUF3290: Protein of u 22.0 1.2E+02 0.0025 28.1 3.8 57 365-443 81-137 (149)
103 PF13131 DUF3951: Protein of u 21.7 87 0.0019 23.6 2.4 36 459-497 9-44 (53)
104 PF11353 DUF3153: Protein of u 21.1 1.6E+02 0.0035 28.4 4.9 46 438-485 162-208 (209)
105 PF03631 Virul_fac_BrkB: Virul 20.9 57 0.0012 32.2 1.8 30 441-470 99-128 (260)
106 PRK04183 glutamyl-tRNA(Gln) am 20.7 6E+02 0.013 27.5 9.5 43 343-385 115-158 (419)
107 PF12508 DUF3714: Protein of u 20.6 3.3E+02 0.0071 26.4 6.8 70 116-193 80-150 (200)
108 PF00957 Synaptobrevin: Synapt 20.4 44 0.00096 27.5 0.7 25 446-470 57-81 (89)
109 TIGR00151 ispF 2C-methyl-D-ery 20.4 2.5E+02 0.0055 26.1 5.7 49 341-391 86-134 (155)
No 1
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.3e-41 Score=354.94 Aligned_cols=291 Identities=24% Similarity=0.415 Sum_probs=225.5
Q ss_pred CCCcccccCCCC-CCC------CC----------CCCCCceEEEE-eCCCceEEEEEEEEEEEeCCcC--c---ccccce
Q 010556 1 MSNTYQALKCNP-DCN------CD----------NDRKECIYERR-YAEMSTSSGVLGVDVISFGNES--E---LVPQRA 57 (507)
Q Consensus 1 ~SSTy~~v~C~~-~C~------C~----------~~~~~C~y~i~-Y~dgs~~sG~l~~D~vsig~~s--~---i~~~~~ 57 (507)
+||||+.++|++ .|. |. -.++.|.|... |.+|+.++|.+++|+|+|+... . .+++++
T Consensus 29 ~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~ 108 (362)
T cd05489 29 HSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNF 108 (362)
T ss_pred CcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCE
Confidence 488999999996 362 21 02356999766 7789889999999999997532 1 267899
Q ss_pred EEEEEEeecCCCCCCCcceEEeecCCCCCHHHHHHHcCCCCccEEEeecCCCCCCceEEeCCCCCCCC-------ceeee
Q 010556 58 VFGCENLETGDLYTQRADGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGITPPPD-------MVFSH 130 (507)
Q Consensus 58 ~FG~~~~~s~~~~~~~~DGILGLG~~~~S~l~qL~~qglI~~~FSl~L~~~~~~~G~L~fGgvD~s~~-------~~~~~ 130 (507)
.|||++++........+|||||||++.+|++.||..++.++++||+||.++...+|.|+||+.++.+. ..+.|
T Consensus 109 ~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~ 188 (362)
T cd05489 109 VFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSY 188 (362)
T ss_pred EEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccc
Confidence 99999876433233348999999999999999999877667889999987655689999999986432 22333
Q ss_pred cCCC----CCCceEEEEeEEEEcCEeeecCCcee----cCCCcEEEecCcceEEechHHHHHHHHHHHHhhcccccccCC
Q 010556 131 SDPF----RSPYYNIELKELRVAGKPLKVSPRIF----DGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGP 202 (507)
Q Consensus 131 ~~~~----~~~~w~V~l~sI~Vgg~~l~l~~~~f----~~~~~aiIDSGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~ 202 (507)
.+.. ...+|.|++++|.||++.+.+++..+ ++..+++|||||++++||+++|++|.++|.+++.........
T Consensus 189 tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~ 268 (362)
T cd05489 189 TPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAA 268 (362)
T ss_pred cccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCC
Confidence 3322 24699999999999999998765543 245689999999999999999999999999887643322211
Q ss_pred CCCccccccCCCccccccccCCCCeEEEEECC-CeEEEeCcCCceEEeeccCCcEEEEEEEcC---CCCeeecHHHhheE
Q 010556 203 DPNYDDICFSGAGRDVSELSKTFPQVDMVFGN-GQKLTLSPENYLFRHMKVSGAYCLGIFQNS---DSTTLLGGIVVRNT 278 (507)
Q Consensus 203 ~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~g-g~~~~L~p~dYi~~~~~~~~~~Cl~i~~~~---~~~~ILG~~Flr~~ 278 (507)
....+.||+.....+......+|+|+|+|++ |.++.|+|++|+++... +..|+++.... .+.||||+.|||++
T Consensus 269 -~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~~ny~~~~~~--~~~Cl~f~~~~~~~~~~~IlG~~~~~~~ 345 (362)
T cd05489 269 -AVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFGANSMVQVKG--GVACLAFVDGGSEPRPAVVIGGHQMEDN 345 (362)
T ss_pred -CCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcCCceEEEcCC--CcEEEEEeeCCCCCCceEEEeeheecce
Confidence 1223789986544443334689999999965 79999999999998753 67899887665 34689999999999
Q ss_pred EEEEECCCCEEEEEec
Q 010556 279 LVTYDRGNDKVGFWKT 294 (507)
Q Consensus 279 yvVFD~en~rIGFA~s 294 (507)
|++||++++|||||++
T Consensus 346 ~vvyD~~~~riGfa~~ 361 (362)
T cd05489 346 LLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEEECCCCEeecccC
Confidence 9999999999999964
No 2
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.4e-39 Score=330.41 Aligned_cols=270 Identities=27% Similarity=0.501 Sum_probs=212.0
Q ss_pred CcccccCCCCCCCCCCCCCCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCCCCcceEEeecC
Q 010556 3 NTYQALKCNPDCNCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGR 82 (507)
Q Consensus 3 STy~~v~C~~~C~C~~~~~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~~~~~~~DGILGLG~ 82 (507)
|+.-|+.|. +| |.|.++|++|+.++|.+++|+|+|++. .+++++.|||+..+++.+. ..|||||||+
T Consensus 23 Ss~~Wv~c~---~c------~~~~i~Yg~Gs~~~G~~~~D~v~ig~~--~~~~~~~Fg~~~~~~~~~~--~~~GilGLg~ 89 (299)
T cd05472 23 SDLTWVQCQ---PC------CLYQVSYGDGSYTTGDLATDTLTLGSS--DVVPGFAFGCGHDNEGLFG--GAAGLLGLGR 89 (299)
T ss_pred CCcccccCC---CC------CeeeeEeCCCceEEEEEEEEEEEeCCC--CccCCEEEECCccCCCccC--CCCEEEECCC
Confidence 566778785 24 999999999988899999999999983 1678899999988776432 6899999999
Q ss_pred CCCCHHHHHHHcCCCCccEEEeecCCC-CCCceEEeCCCCCCCCceeeecCCCC----CCceEEEEeEEEEcCEeeecCC
Q 010556 83 GRLSVVDQLVEKGVISDSFSLCYGGMD-VGGGAMVLGGITPPPDMVFSHSDPFR----SPYYNIELKELRVAGKPLKVSP 157 (507)
Q Consensus 83 ~~~S~l~qL~~qglI~~~FSl~L~~~~-~~~G~L~fGgvD~s~~~~~~~~~~~~----~~~w~V~l~sI~Vgg~~l~l~~ 157 (507)
+.++++.||..+ .+++||+||.+.+ ...|.|+|||+|++ .....|.+... ..+|.|++++|.||++.+..++
T Consensus 90 ~~~s~~~ql~~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~-~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~ 166 (299)
T cd05472 90 GKLSLPSQTASS--YGGVFSYCLPDRSSSSSGYLSFGAAASV-PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPP 166 (299)
T ss_pred CcchHHHHhhHh--hcCceEEEccCCCCCCCceEEeCCcccc-CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCc
Confidence 999999998775 4578999998754 55799999999987 33344433222 3689999999999999887643
Q ss_pred ceecCCCcEEEecCcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECCCeE
Q 010556 158 RIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQK 237 (507)
Q Consensus 158 ~~f~~~~~aiIDSGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~gg~~ 237 (507)
.. ..+..++|||||++++||+++|++|.+++.+.+...... ......+.|++.. |.. ...+|+|+|+|+++.+
T Consensus 167 ~~-~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~C~~~~---~~~-~~~~P~i~f~f~~g~~ 239 (299)
T cd05472 167 AS-FGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRA--PGFSILDTCYDLS---GFR-SVSVPTVSLHFQGGAD 239 (299)
T ss_pred cc-cCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhccCCCC--CCCCCCCccCcCC---CCc-CCccCCEEEEECCCCE
Confidence 22 235689999999999999999999999998776432111 1111233587532 222 2579999999965899
Q ss_pred EEeCcCCceEEeeccCCcEEEEEEEcC--CCCeeecHHHhheEEEEEECCCCEEEEEeccC
Q 010556 238 LTLSPENYLFRHMKVSGAYCLGIFQNS--DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296 (507)
Q Consensus 238 ~~L~p~dYi~~~~~~~~~~Cl~i~~~~--~~~~ILG~~Flr~~yvVFD~en~rIGFA~s~C 296 (507)
+.|+|++|++.... .+..|+++.... .+.+|||+.|||++|+|||++++|||||+++|
T Consensus 240 ~~l~~~~y~~~~~~-~~~~C~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 240 VELDASGVLYPVDD-SSQVCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEeCcccEEEEecC-CCCEEEEEeCCCCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 99999999994322 467899877653 46799999999999999999999999999999
No 3
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=3.5e-39 Score=343.72 Aligned_cols=282 Identities=25% Similarity=0.486 Sum_probs=222.4
Q ss_pred CCCcccccCCCC-CCC-------CCCCCCCceEEEEeCCCceEEEEEEEEEEEeCCcC--cccccceEEEEEEeecCCCC
Q 010556 1 MSNTYQALKCNP-DCN-------CDNDRKECIYERRYAEMSTSSGVLGVDVISFGNES--ELVPQRAVFGCENLETGDLY 70 (507)
Q Consensus 1 ~SSTy~~v~C~~-~C~-------C~~~~~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s--~i~~~~~~FG~~~~~s~~~~ 70 (507)
+||||+.++|++ .|. |.. ++.|.|+++|+||+.+.|.+++|+|+|++.. ..+++++.|||++...+.+.
T Consensus 131 ~SST~~~~~C~s~~C~~~~~~~~c~~-~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~ 209 (431)
T PLN03146 131 KSSTYKDVSCDSSQCQALGNQASCSD-ENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFD 209 (431)
T ss_pred CCCCCcccCCCCcccccCCCCCCCCC-CCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCcc
Confidence 599999999996 473 643 3579999999999988999999999998742 24578999999998776543
Q ss_pred CCCcceEEeecCCCCCHHHHHHHcCCCCccEEEeecCCC---CCCceEEeCCCCCCCC--ceeeecCCC-CCCceEEEEe
Q 010556 71 TQRADGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGGMD---VGGGAMVLGGITPPPD--MVFSHSDPF-RSPYYNIELK 144 (507)
Q Consensus 71 ~~~~DGILGLG~~~~S~l~qL~~qglI~~~FSl~L~~~~---~~~G~L~fGgvD~s~~--~~~~~~~~~-~~~~w~V~l~ 144 (507)
...|||||||++.+|++.||... +.++||+||.+.. ...|.|+||+...-.. ..++++... ...+|.|+++
T Consensus 210 -~~~~GilGLG~~~~Sl~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~ 286 (431)
T PLN03146 210 -EKGSGIVGLGGGPLSLISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLE 286 (431)
T ss_pred -CCCceeEecCCCCccHHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEE
Confidence 35899999999999999999763 5678999997522 3479999999532222 334433211 2468999999
Q ss_pred EEEEcCEeeecCCceec--CCCcEEEecCcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCcccccccc
Q 010556 145 ELRVAGKPLKVSPRIFD--GGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELS 222 (507)
Q Consensus 145 sI~Vgg~~l~l~~~~f~--~~~~aiIDSGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~ 222 (507)
+|.||++.+.++...|. +.+.++|||||++++||+++|++|.++|.+.+...... . .....+.||+... .
T Consensus 287 gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~-~-~~~~~~~C~~~~~------~ 358 (431)
T PLN03146 287 AISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVS-D-PQGLLSLCYSSTS------D 358 (431)
T ss_pred EEEECCEECcCCccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCC-C-CCCCCCccccCCC------C
Confidence 99999999987765542 34579999999999999999999999998887532211 1 1123578986321 1
Q ss_pred CCCCeEEEEECCCeEEEeCcCCceEEeeccCCcEEEEEEEcCCCCeeecHHHhheEEEEEECCCCEEEEEeccCCc
Q 010556 223 KTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSE 298 (507)
Q Consensus 223 ~~lP~I~f~f~gg~~~~L~p~dYi~~~~~~~~~~Cl~i~~~~~~~~ILG~~Flr~~yvVFD~en~rIGFA~s~C~~ 298 (507)
..+|+|+|+| +|.++.|+|++|++.... +..|+++... .+.+|||+.|||++|++||++++||||++.+|+.
T Consensus 359 ~~~P~i~~~F-~Ga~~~l~~~~~~~~~~~--~~~Cl~~~~~-~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 359 IKLPIITAHF-TGADVKLQPLNTFVKVSE--DLVCFAMIPT-SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred CCCCeEEEEE-CCCeeecCcceeEEEcCC--CcEEEEEecC-CCceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 4799999999 689999999999997653 6789987754 4569999999999999999999999999999975
No 4
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=336.48 Aligned_cols=286 Identities=34% Similarity=0.651 Sum_probs=234.1
Q ss_pred CCCcccccCCCCC-C----CCCCCCCCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCC-CCc
Q 010556 1 MSNTYQALKCNPD-C----NCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYT-QRA 74 (507)
Q Consensus 1 ~SSTy~~v~C~~~-C----~C~~~~~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~~~~-~~~ 74 (507)
+||||+.+.|++. | .|...++.|+|+++|+||++++|.+++|+|++++.+.+..++++|||+..+.+.+.. ...
T Consensus 94 ~SSt~~~~~c~~~~c~~~~~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~ 173 (398)
T KOG1339|consen 94 ASSTYKSVGCSSPRCKSLPQSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAF 173 (398)
T ss_pred ccccccccCCCCccccccccCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCcccccccccc
Confidence 5999999999974 5 233457899999999998889999999999999853356778999999999876222 568
Q ss_pred ceEEeecCCCCCHHHHHHHcCCCCccEEEeecCCCC---CCceEEeCCCCCCCCce-eeecCCCCCC--ceEEEEeEEEE
Q 010556 75 DGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGGMDV---GGGAMVLGGITPPPDMV-FSHSDPFRSP--YYNIELKELRV 148 (507)
Q Consensus 75 DGILGLG~~~~S~l~qL~~qglI~~~FSl~L~~~~~---~~G~L~fGgvD~s~~~~-~~~~~~~~~~--~w~V~l~sI~V 148 (507)
|||||||++.+|+..|+...+...++||+||.+.+. .+|.|+||++|+++... +.+++..... +|.|.+++|.|
T Consensus 174 dGIlGLg~~~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~v 253 (398)
T KOG1339|consen 174 DGILGLGRGSLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISV 253 (398)
T ss_pred ceEeecCCCCccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEE
Confidence 999999999999999999987777799999998653 48999999999997544 4444444444 99999999999
Q ss_pred cCEeeecCCceecC-CCcEEEecCcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCe
Q 010556 149 AGKPLKVSPRIFDG-GHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQ 227 (507)
Q Consensus 149 gg~~l~l~~~~f~~-~~~aiIDSGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~ 227 (507)
|++. .+++..+.. ..++++||||++++||+++|++|.++|.+++. . ......+...|+...... ..+|.
T Consensus 254 gg~~-~~~~~~~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~-~---~~~~~~~~~~C~~~~~~~-----~~~P~ 323 (398)
T KOG1339|consen 254 GGKR-PIGSSLFCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVS-V---VGTDGEYFVPCFSISTSG-----VKLPD 323 (398)
T ss_pred CCcc-CCCcceEecCCCCEEEECCcceeeccHHHHHHHHHHHHhhee-c---cccCCceeeecccCCCCc-----ccCCc
Confidence 9987 666666655 48899999999999999999999999988741 0 123445677998653322 35999
Q ss_pred EEEEECCCeEEEeCcCCceEEeeccCCcEEEEEEEcCC--CCeeecHHHhheEEEEEECC-CCEEEEEe--ccCC
Q 010556 228 VDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSD--STTLLGGIVVRNTLVTYDRG-NDKVGFWK--TNCS 297 (507)
Q Consensus 228 I~f~f~gg~~~~L~p~dYi~~~~~~~~~~Cl~i~~~~~--~~~ILG~~Flr~~yvVFD~e-n~rIGFA~--s~C~ 297 (507)
|.|+|++|+.+.+++++|+++....... |++.+...+ ..||||+.|||+++++||.. ++||||++ ..|.
T Consensus 324 i~~~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 324 ITFHFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred EEEEECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 9999955999999999999998653222 999999874 48999999999999999999 99999999 6664
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=4.1e-38 Score=323.94 Aligned_cols=250 Identities=27% Similarity=0.469 Sum_probs=198.6
Q ss_pred CCCcccccCCCC-CC----CCCCCCCCceEEEEeCCCceEEEEEEEEEEEeCCcCcc----cccceEEEEEEeecCCCCC
Q 010556 1 MSNTYQALKCNP-DC----NCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNESEL----VPQRAVFGCENLETGDLYT 71 (507)
Q Consensus 1 ~SSTy~~v~C~~-~C----~C~~~~~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i----~~~~~~FG~~~~~s~~~~~ 71 (507)
+|+||+.++|++ .| .|. ++.|+|++.|++|+.++|.+++|+|+|++.... ...++.|||+..+.+.+..
T Consensus 50 ~Sst~~~~~C~~~~c~~~~~~~--~~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~ 127 (326)
T cd06096 50 NSITSSILYCDCNKCCYCLSCL--NNKCEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLT 127 (326)
T ss_pred cccccccccCCCccccccCcCC--CCcCcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccc
Confidence 489999999986 34 343 467999999999988899999999999975310 1235789999988876666
Q ss_pred CCcceEEeecCCCC----CHHHHHHHcCCCC---ccEEEeecCCCCCCceEEeCCCCCCCC-----------ceeeecCC
Q 010556 72 QRADGIMGLGRGRL----SVVDQLVEKGVIS---DSFSLCYGGMDVGGGAMVLGGITPPPD-----------MVFSHSDP 133 (507)
Q Consensus 72 ~~~DGILGLG~~~~----S~l~qL~~qglI~---~~FSl~L~~~~~~~G~L~fGgvD~s~~-----------~~~~~~~~ 133 (507)
...|||||||++.. +...+|.+++.+. ++||+||.+ .+|.|+|||+|+.+. ..+.|.+.
T Consensus 128 ~~~~GilGLg~~~~~~~~~~~~~l~~~~~~~~~~~~FS~~l~~---~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~ 204 (326)
T cd06096 128 QQATGILGLSLTKNNGLPTPIILLFTKRPKLKKDKIFSICLSE---DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPI 204 (326)
T ss_pred cccceEEEccCCcccccCchhHHHHHhcccccCCceEEEEEcC---CCeEEEECccChhhhcccccccccccCCceEEec
Confidence 77899999999864 2445577776654 679999985 369999999998753 23445544
Q ss_pred CCCCceEEEEeEEEEcCEeeecCCceecCCCcEEEecCcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCC
Q 010556 134 FRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSG 213 (507)
Q Consensus 134 ~~~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~aiIDSGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~ 213 (507)
....+|.|.+++|.|+++..... ...+..++|||||++++||+++|++|.+++
T Consensus 205 ~~~~~y~v~l~~i~vg~~~~~~~---~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------ 257 (326)
T cd06096 205 TRKYYYYVKLEGLSVYGTTSNSG---NTKGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------ 257 (326)
T ss_pred cCCceEEEEEEEEEEccccccee---cccCCCEEEeCCCCcccCCHHHHHHHHhhc------------------------
Confidence 55689999999999999861110 124568999999999999999999987554
Q ss_pred CccccccccCCCCeEEEEECCCeEEEeCcCCceEEeeccCCcEEEEEEEcCCCCeeecHHHhheEEEEEECCCCEEEEEe
Q 010556 214 AGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (507)
Q Consensus 214 ~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~dYi~~~~~~~~~~Cl~i~~~~~~~~ILG~~Flr~~yvVFD~en~rIGFA~ 293 (507)
|+|+|.|++|+++.++|++|+..... ..+|+ .+...++.+|||++|||++|+|||++++|||||+
T Consensus 258 ------------P~i~~~f~~g~~~~i~p~~y~~~~~~--~~c~~-~~~~~~~~~ILG~~flr~~y~vFD~~~~riGfa~ 322 (326)
T cd06096 258 ------------PTITIIFENNLKIDWKPSSYLYKKES--FWCKG-GEKSVSNKPILGASFFKNKQIIFDLDNNRIGFVE 322 (326)
T ss_pred ------------CcEEEEEcCCcEEEECHHHhccccCC--ceEEE-EEecCCCceEEChHHhcCcEEEEECcCCEEeeEc
Confidence 88999995589999999999997643 33454 4554567899999999999999999999999999
Q ss_pred ccCC
Q 010556 294 TNCS 297 (507)
Q Consensus 294 s~C~ 297 (507)
++|.
T Consensus 323 ~~C~ 326 (326)
T cd06096 323 SNCP 326 (326)
T ss_pred CCCC
Confidence 9995
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=6.6e-38 Score=320.95 Aligned_cols=243 Identities=24% Similarity=0.475 Sum_probs=200.7
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCC-CCcceEEeecCCCC------CHHHHHHH
Q 010556 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYT-QRADGIMGLGRGRL------SVVDQLVE 93 (507)
Q Consensus 21 ~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~~~~-~~~DGILGLG~~~~------S~l~qL~~ 93 (507)
..|.|++.|++|+ +.|.+++|+|++++ +++.++.|||++.+.+.+.. ...|||||||++.+ +++++|++
T Consensus 64 ~~~~~~~~yg~gs-~~G~~~~D~v~ig~---~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~ 139 (317)
T cd05478 64 TGQPLSIQYGTGS-MTGILGYDTVQVGG---ISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMS 139 (317)
T ss_pred CCcEEEEEECCce-EEEEEeeeEEEECC---EEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHh
Confidence 3689999999987 69999999999998 57889999999887765443 35799999998754 48999999
Q ss_pred cCCCC-ccEEEeecCCCCCCceEEeCCCCCCC-CceeeecCCCCCCceEEEEeEEEEcCEeeecCCceecCCCcEEEecC
Q 010556 94 KGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSG 171 (507)
Q Consensus 94 qglI~-~~FSl~L~~~~~~~G~L~fGgvD~s~-~~~~~~~~~~~~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~aiIDSG 171 (507)
+|+|+ +.||+||.+.+..+|.|+|||+|+++ .....|.+.....+|.|.++++.||++.+... .+..++||||
T Consensus 140 ~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~~~-----~~~~~iiDTG 214 (317)
T cd05478 140 QGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVACS-----GGCQAIVDTG 214 (317)
T ss_pred CCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEccC-----CCCEEEECCC
Confidence 99997 77999999865567999999999876 34555555556789999999999999987532 3457999999
Q ss_pred cceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECCCeEEEeCcCCceEEeec
Q 010556 172 TTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMK 251 (507)
Q Consensus 172 Ts~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~dYi~~~~~ 251 (507)
|+++++|++++++|.+++..... ....+..+|. .. ..+|.|+|+| +|+.+.|+|++|+.+.
T Consensus 215 ts~~~lp~~~~~~l~~~~~~~~~-------~~~~~~~~C~--------~~-~~~P~~~f~f-~g~~~~i~~~~y~~~~-- 275 (317)
T cd05478 215 TSLLVGPSSDIANIQSDIGASQN-------QNGEMVVNCS--------SI-SSMPDVVFTI-NGVQYPLPPSAYILQD-- 275 (317)
T ss_pred chhhhCCHHHHHHHHHHhCCccc-------cCCcEEeCCc--------Cc-ccCCcEEEEE-CCEEEEECHHHheecC--
Confidence 99999999999999988844321 1223445663 22 4799999999 8999999999999865
Q ss_pred cCCcEEEEEEEcC--CCCeeecHHHhheEEEEEECCCCEEEEEe
Q 010556 252 VSGAYCLGIFQNS--DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (507)
Q Consensus 252 ~~~~~Cl~i~~~~--~~~~ILG~~Flr~~yvVFD~en~rIGFA~ 293 (507)
+..|++.++.. .+.||||++|||++|+|||++++|||||+
T Consensus 276 --~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 276 --QGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred --CCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 56899877765 46799999999999999999999999996
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=8.2e-38 Score=321.20 Aligned_cols=246 Identities=24% Similarity=0.420 Sum_probs=197.7
Q ss_pred CceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC-CCCCCcceEEeecCCCC------CHHHHHHHc
Q 010556 22 ECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL------SVVDQLVEK 94 (507)
Q Consensus 22 ~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~-~~~~~~DGILGLG~~~~------S~l~qL~~q 94 (507)
.|.|++.|++|+ ++|.+++|+|+|++ .++.++.|||++++++. +.....|||||||++.. +++++|+++
T Consensus 63 ~~~~~i~Yg~G~-~~G~~~~D~v~~g~---~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~ 138 (325)
T cd05490 63 GTEFAIQYGSGS-LSGYLSQDTVSIGG---LQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQ 138 (325)
T ss_pred CcEEEEEECCcE-EEEEEeeeEEEECC---EEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhc
Confidence 689999999996 69999999999998 57889999999888764 43456899999999765 478999999
Q ss_pred CCCC-ccEEEeecCCC--CCCceEEeCCCCCCCC-ceeeecCCCCCCceEEEEeEEEEcCEeeecCCceecCCCcEEEec
Q 010556 95 GVIS-DSFSLCYGGMD--VGGGAMVLGGITPPPD-MVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDS 170 (507)
Q Consensus 95 glI~-~~FSl~L~~~~--~~~G~L~fGgvD~s~~-~~~~~~~~~~~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~aiIDS 170 (507)
|+|+ +.||+||.++. ..+|.|+|||+|++++ ....|.+.....+|.|++++|.||++.... ..+..++|||
T Consensus 139 g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~-----~~~~~aiiDS 213 (325)
T cd05490 139 KLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLTLC-----KGGCEAIVDT 213 (325)
T ss_pred CCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeeeec-----CCCCEEEECC
Confidence 9997 67999998642 2479999999999863 445555555678999999999998864321 1345899999
Q ss_pred CcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECCCeEEEeCcCCceEEee
Q 010556 171 GTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHM 250 (507)
Q Consensus 171 GTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~dYi~~~~ 250 (507)
||+++++|++++++|.+++.+. . .....+..+|. .. ..+|+|+|+| +|+.+.|+|++|+++..
T Consensus 214 GTt~~~~p~~~~~~l~~~~~~~----~---~~~~~~~~~C~--------~~-~~~P~i~f~f-gg~~~~l~~~~y~~~~~ 276 (325)
T cd05490 214 GTSLITGPVEEVRALQKAIGAV----P---LIQGEYMIDCE--------KI-PTLPVISFSL-GGKVYPLTGEDYILKVS 276 (325)
T ss_pred CCccccCCHHHHHHHHHHhCCc----c---ccCCCEEeccc--------cc-ccCCCEEEEE-CCEEEEEChHHeEEecc
Confidence 9999999999999999888432 1 11223455663 22 5799999999 89999999999999765
Q ss_pred ccCCcEEEEEEEcC------CCCeeecHHHhheEEEEEECCCCEEEEEe
Q 010556 251 KVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (507)
Q Consensus 251 ~~~~~~Cl~i~~~~------~~~~ILG~~Flr~~yvVFD~en~rIGFA~ 293 (507)
......|++.+... .+.||||++|||++|+|||++++|||||+
T Consensus 277 ~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 277 QRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 43456899766541 45799999999999999999999999985
No 8
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.7e-37 Score=333.62 Aligned_cols=246 Identities=19% Similarity=0.308 Sum_probs=201.2
Q ss_pred eEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC-CCCCCcceEEeecCCCC---------CHHHHHHH
Q 010556 24 IYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL---------SVVDQLVE 93 (507)
Q Consensus 24 ~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~-~~~~~~DGILGLG~~~~---------S~l~qL~~ 93 (507)
.+.++|++|+ .+|.+++|+|++++ ++++++.|||++.+++. +....+|||||||++.+ +++++|++
T Consensus 182 ~~~i~YGsGs-~~G~l~~DtV~ig~---l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~ 257 (482)
T PTZ00165 182 ETYIQYGTGE-CVLALGKDTVKIGG---LKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKK 257 (482)
T ss_pred eEEEEeCCCc-EEEEEEEEEEEECC---EEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHH
Confidence 4679999997 48999999999998 68889999999988664 54567899999999764 48999999
Q ss_pred cCCCC-ccEEEeecCCCCCCceEEeCCCCCCCC---ceeeecCCCCCCceEEEEeEEEEcCEeeecCCceecCCCcEEEe
Q 010556 94 KGVIS-DSFSLCYGGMDVGGGAMVLGGITPPPD---MVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (507)
Q Consensus 94 qglI~-~~FSl~L~~~~~~~G~L~fGgvD~s~~---~~~~~~~~~~~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~aiID 169 (507)
||+|+ +.||+||.++...+|.|+|||+|+.+. ..+.|.+.....+|.|.+++|.||++.+... ..+..+++|
T Consensus 258 qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~----~~~~~aIiD 333 (482)
T PTZ00165 258 QNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFC----DRKCKAAID 333 (482)
T ss_pred cCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeec----CCceEEEEc
Confidence 99997 679999987656689999999998753 3466766667889999999999999877653 235689999
Q ss_pred cCcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECC--C--eEEEeCcCCc
Q 010556 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGN--G--QKLTLSPENY 245 (507)
Q Consensus 170 SGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~g--g--~~~~L~p~dY 245 (507)
|||+++++|++++++|.+++.. ..+|. .. +.+|+|+|+|++ | +++.|+|++|
T Consensus 334 TGTSli~lP~~~~~~i~~~i~~---------------~~~C~--------~~-~~lP~itf~f~g~~g~~v~~~l~p~dY 389 (482)
T PTZ00165 334 TGSSLITGPSSVINPLLEKIPL---------------EEDCS--------NK-DSLPRISFVLEDVNGRKIKFDMDPEDY 389 (482)
T ss_pred CCCccEeCCHHHHHHHHHHcCC---------------ccccc--------cc-ccCCceEEEECCCCCceEEEEEchHHe
Confidence 9999999999999999888721 12563 22 579999999942 1 4899999999
Q ss_pred eEEee--ccCCcEEEEEEEcC------CCCeeecHHHhheEEEEEECCCCEEEEEeccCCcccc
Q 010556 246 LFRHM--KVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSELWR 301 (507)
Q Consensus 246 i~~~~--~~~~~~Cl~i~~~~------~~~~ILG~~Flr~~yvVFD~en~rIGFA~s~C~~~~~ 301 (507)
+.+.. ...+..|+..+... ++.||||++|||++|+|||++|+|||||+++|.....
T Consensus 390 i~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~~~ 453 (482)
T PTZ00165 390 VIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQSGP 453 (482)
T ss_pred eeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCCCC
Confidence 99752 22456898766542 3579999999999999999999999999999876544
No 9
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2e-37 Score=309.70 Aligned_cols=224 Identities=38% Similarity=0.685 Sum_probs=189.9
Q ss_pred ceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCCCCcceEEeecCCCCCHHHHHHHcCCCCccEE
Q 010556 23 CIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLSVVDQLVEKGVISDSFS 102 (507)
Q Consensus 23 C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~~~~~~~DGILGLG~~~~S~l~qL~~qglI~~~FS 102 (507)
|.|.++|+|++.++|.+++|+|+|++.. .+++++.|||++++++ +.....+||||||+...|++.||..++ ++||
T Consensus 31 ~~~~~~Y~dg~~~~G~~~~D~v~~g~~~-~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~---~~Fs 105 (265)
T cd05476 31 CSYEYSYGDGSSTSGVLATETFTFGDSS-VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG---NKFS 105 (265)
T ss_pred CceEeEeCCCceeeeeEEEEEEEecCCC-CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc---CeeE
Confidence 8899999999899999999999999842 2678999999998877 556678999999999999999999887 7899
Q ss_pred EeecCC--CCCCceEEeCCCCCCCCceeeecCCC----CCCceEEEEeEEEEcCEeeecCCce----ecCCCcEEEecCc
Q 010556 103 LCYGGM--DVGGGAMVLGGITPPPDMVFSHSDPF----RSPYYNIELKELRVAGKPLKVSPRI----FDGGHGTVLDSGT 172 (507)
Q Consensus 103 l~L~~~--~~~~G~L~fGgvD~s~~~~~~~~~~~----~~~~w~V~l~sI~Vgg~~l~l~~~~----f~~~~~aiIDSGT 172 (507)
+||.+. +..+|+|+|||+|+++.....|.+.. ...+|.|++++|.|+++.+.+++.. ......++|||||
T Consensus 106 ~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGT 185 (265)
T cd05476 106 YCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGT 185 (265)
T ss_pred EEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCC
Confidence 999874 35689999999999743344443322 2579999999999999988654322 1245689999999
Q ss_pred ceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECCCeEEEeCcCCceEEeecc
Q 010556 173 TYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKV 252 (507)
Q Consensus 173 s~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~dYi~~~~~~ 252 (507)
++++||+++| |+|+|+|+++.++.+++++|+....
T Consensus 186 s~~~lp~~~~-------------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~-- 220 (265)
T cd05476 186 TLTYLPDPAY-------------------------------------------PDLTLHFDGGADLELPPENYFVDVG-- 220 (265)
T ss_pred cceEcCcccc-------------------------------------------CCEEEEECCCCEEEeCcccEEEECC--
Confidence 9999999876 7899999559999999999999543
Q ss_pred CCcEEEEEEEcC-CCCeeecHHHhheEEEEEECCCCEEEEEeccC
Q 010556 253 SGAYCLGIFQNS-DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296 (507)
Q Consensus 253 ~~~~Cl~i~~~~-~~~~ILG~~Flr~~yvVFD~en~rIGFA~s~C 296 (507)
.+..|+++.... .+.+|||++|||++|++||++++|||||+++|
T Consensus 221 ~~~~C~~~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 221 EGVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCCEEEEEecCCCCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 367999888774 77899999999999999999999999999999
No 10
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.5e-37 Score=318.23 Aligned_cols=246 Identities=25% Similarity=0.470 Sum_probs=198.9
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC-CCCCCcceEEeecCCCCC------HHHHHHH
Q 010556 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRLS------VVDQLVE 93 (507)
Q Consensus 21 ~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~-~~~~~~DGILGLG~~~~S------~l~qL~~ 93 (507)
..|+|++.|++|+ ++|.+++|+|+|++ +++.++.|||+..+.+. +.....|||||||++.++ ++++|++
T Consensus 54 ~~~~~~i~Yg~g~-~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~ 129 (316)
T cd05486 54 NGEAFSIQYGTGS-LTGIIGIDQVTVEG---ITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMA 129 (316)
T ss_pred CCcEEEEEeCCcE-EEEEeeecEEEECC---EEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHh
Confidence 4799999999986 69999999999998 57889999999877664 434578999999997654 7999999
Q ss_pred cCCCC-ccEEEeecCCC--CCCceEEeCCCCCCC-CceeeecCCCCCCceEEEEeEEEEcCEeeecCCceecCCCcEEEe
Q 010556 94 KGVIS-DSFSLCYGGMD--VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (507)
Q Consensus 94 qglI~-~~FSl~L~~~~--~~~G~L~fGgvD~s~-~~~~~~~~~~~~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~aiID 169 (507)
||+|+ +.||+||.+.. ..+|.|+|||+|+++ ...+.|.+.....+|.|++++|.||++.+..+ .+..++||
T Consensus 130 qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~~~-----~~~~aiiD 204 (316)
T cd05486 130 QNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIFCS-----DGCQAIVD 204 (316)
T ss_pred cCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCceEEEEEeeEEEEecceEecC-----CCCEEEEC
Confidence 99997 67999998642 347999999999986 34455655556789999999999999876432 34589999
Q ss_pred cCcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECCCeEEEeCcCCceEEe
Q 010556 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (507)
Q Consensus 170 SGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~dYi~~~ 249 (507)
|||+++++|++++++|.+++.+.. .+..+..+|. .. +.+|+|+|+| +|+.++|+|++|+...
T Consensus 205 TGTs~~~lP~~~~~~l~~~~~~~~--------~~~~~~~~C~--------~~-~~~p~i~f~f-~g~~~~l~~~~y~~~~ 266 (316)
T cd05486 205 TGTSLITGPSGDIKQLQNYIGATA--------TDGEYGVDCS--------TL-SLMPSVTFTI-NGIPYSLSPQAYTLED 266 (316)
T ss_pred CCcchhhcCHHHHHHHHHHhCCcc--------cCCcEEEecc--------cc-ccCCCEEEEE-CCEEEEeCHHHeEEec
Confidence 999999999999999988774321 1223455663 22 5799999999 8999999999999875
Q ss_pred eccCCcEEEEEEEcC------CCCeeecHHHhheEEEEEECCCCEEEEEe
Q 010556 250 MKVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (507)
Q Consensus 250 ~~~~~~~Cl~i~~~~------~~~~ILG~~Flr~~yvVFD~en~rIGFA~ 293 (507)
....+..|+..+... .+.||||++|||++|+|||.+++|||||+
T Consensus 267 ~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 267 QSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred ccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 332356898776542 35699999999999999999999999996
No 11
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=6.6e-37 Score=313.54 Aligned_cols=245 Identities=21% Similarity=0.449 Sum_probs=198.1
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC-CCCCCcceEEeecCCC------CCHHHHHHH
Q 010556 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGR------LSVVDQLVE 93 (507)
Q Consensus 21 ~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~-~~~~~~DGILGLG~~~------~S~l~qL~~ 93 (507)
..|.|++.|++|+ ++|.+++|+|++++ .+++++.|||++...+. +.....|||||||++. .+++++|++
T Consensus 57 ~~~~~~~~Yg~Gs-~~G~~~~D~i~~g~---~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~ 132 (318)
T cd05477 57 NGETFSLQYGSGS-LTGIFGYDTVTVQG---IIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQ 132 (318)
T ss_pred CCcEEEEEECCcE-EEEEEEeeEEEECC---EEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHh
Confidence 4699999999997 59999999999998 57789999999887653 3344679999999864 469999999
Q ss_pred cCCCC-ccEEEeecCCC-CCCceEEeCCCCCCCC-ceeeecCCCCCCceEEEEeEEEEcCEeeecCCceecCCCcEEEec
Q 010556 94 KGVIS-DSFSLCYGGMD-VGGGAMVLGGITPPPD-MVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDS 170 (507)
Q Consensus 94 qglI~-~~FSl~L~~~~-~~~G~L~fGgvD~s~~-~~~~~~~~~~~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~aiIDS 170 (507)
+|+|+ +.||+||.++. ..+|.|+|||+|+++. ....|.+.....+|.|+++++.|+++.+.+. ..+..++|||
T Consensus 133 ~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~----~~~~~~iiDS 208 (318)
T cd05477 133 QNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWC----SQGCQAIVDT 208 (318)
T ss_pred cCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEeccc----CCCceeeECC
Confidence 99997 77999998752 3469999999998863 3455555556789999999999999887542 2345799999
Q ss_pred CcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECCCeEEEeCcCCceEEee
Q 010556 171 GTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHM 250 (507)
Q Consensus 171 GTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~dYi~~~~ 250 (507)
||+++++|++++++|++++.++.. ....+..+|. .. +.+|+|+|+| +++++.|+|++|+...
T Consensus 209 Gtt~~~lP~~~~~~l~~~~~~~~~-------~~~~~~~~C~--------~~-~~~p~l~~~f-~g~~~~v~~~~y~~~~- 270 (318)
T cd05477 209 GTSLLTAPQQVMSTLMQSIGAQQD-------QYGQYVVNCN--------NI-QNLPTLTFTI-NGVSFPLPPSAYILQN- 270 (318)
T ss_pred CCccEECCHHHHHHHHHHhCCccc-------cCCCEEEeCC--------cc-ccCCcEEEEE-CCEEEEECHHHeEecC-
Confidence 999999999999999998855432 1223445664 22 5799999999 8899999999999875
Q ss_pred ccCCcEEEEEEEcC-------CCCeeecHHHhheEEEEEECCCCEEEEEec
Q 010556 251 KVSGAYCLGIFQNS-------DSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (507)
Q Consensus 251 ~~~~~~Cl~i~~~~-------~~~~ILG~~Flr~~yvVFD~en~rIGFA~s 294 (507)
...|+..+... .+.+|||++|||++|++||++++|||||++
T Consensus 271 ---~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 271 ---NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ---CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 45787655431 246999999999999999999999999985
No 12
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=6.8e-37 Score=314.75 Aligned_cols=246 Identities=24% Similarity=0.465 Sum_probs=199.8
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecC-CCCCCCcceEEeecCCCC------CHHHHHHH
Q 010556 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETG-DLYTQRADGIMGLGRGRL------SVVDQLVE 93 (507)
Q Consensus 21 ~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~-~~~~~~~DGILGLG~~~~------S~l~qL~~ 93 (507)
..|.|++.|++|+ ++|.+++|+|++++. .+ ++.||++..... .+.....|||||||++.. +++++|++
T Consensus 64 ~~~~~~~~Yg~g~-~~G~~~~D~v~~g~~---~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~ 138 (326)
T cd05487 64 NGTEFTIHYASGT-VKGFLSQDIVTVGGI---PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMS 138 (326)
T ss_pred CCEEEEEEeCCce-EEEEEeeeEEEECCE---Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHh
Confidence 4799999999996 799999999999983 44 478999987543 233446899999999754 47999999
Q ss_pred cCCCC-ccEEEeecCCC--CCCceEEeCCCCCCC-CceeeecCCCCCCceEEEEeEEEEcCEeeecCCceecCCCcEEEe
Q 010556 94 KGVIS-DSFSLCYGGMD--VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (507)
Q Consensus 94 qglI~-~~FSl~L~~~~--~~~G~L~fGgvD~s~-~~~~~~~~~~~~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~aiID 169 (507)
||+|+ +.||+||.+.+ ..+|.|+|||+|+++ ...+.+++.....+|.|+++++.|+++.+... .+..++||
T Consensus 139 qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~-----~~~~aiiD 213 (326)
T cd05487 139 QGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLLCE-----DGCTAVVD 213 (326)
T ss_pred cCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEecC-----CCCEEEEC
Confidence 99997 67999998753 357999999999987 34566666667789999999999999876532 34579999
Q ss_pred cCcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECCCeEEEeCcCCceEEe
Q 010556 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (507)
Q Consensus 170 SGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~dYi~~~ 249 (507)
|||+++++|++++++|++++.+... ...|..+|. .. +.+|+|+|+| ++..++|++++|+.+.
T Consensus 214 SGts~~~lP~~~~~~l~~~~~~~~~--------~~~y~~~C~--------~~-~~~P~i~f~f-gg~~~~v~~~~yi~~~ 275 (326)
T cd05487 214 TGASFISGPTSSISKLMEALGAKER--------LGDYVVKCN--------EV-PTLPDISFHL-GGKEYTLSSSDYVLQD 275 (326)
T ss_pred CCccchhCcHHHHHHHHHHhCCccc--------CCCEEEecc--------cc-CCCCCEEEEE-CCEEEEeCHHHhEEec
Confidence 9999999999999999988853321 223456674 22 5789999999 8999999999999987
Q ss_pred eccCCcEEEEEEEcC------CCCeeecHHHhheEEEEEECCCCEEEEEec
Q 010556 250 MKVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (507)
Q Consensus 250 ~~~~~~~Cl~i~~~~------~~~~ILG~~Flr~~yvVFD~en~rIGFA~s 294 (507)
....+..|+..+... .+.||||++|||++|+|||++++|||||++
T Consensus 276 ~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 276 SDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred cCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 654567898777642 357999999999999999999999999985
No 13
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1e-36 Score=312.74 Aligned_cols=242 Identities=23% Similarity=0.456 Sum_probs=196.8
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC-CCCCCcceEEeecCCCCC------HHHHHHH
Q 010556 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRLS------VVDQLVE 93 (507)
Q Consensus 21 ~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~-~~~~~~DGILGLG~~~~S------~l~qL~~ 93 (507)
..|.|++.|++|+ ++|.+++|+|++++ +.++++.|||+.++.+. +.....|||||||++..+ .+.+|++
T Consensus 64 ~~~~~~~~y~~g~-~~G~~~~D~v~ig~---~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~ 139 (320)
T cd05488 64 NGTEFKIQYGSGS-LEGFVSQDTLSIGD---LTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMIN 139 (320)
T ss_pred CCCEEEEEECCce-EEEEEEEeEEEECC---EEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHh
Confidence 4799999999987 69999999999998 57789999999877654 233467999999997653 5678999
Q ss_pred cCCCC-ccEEEeecCCCCCCceEEeCCCCCCC-CceeeecCCCCCCceEEEEeEEEEcCEeeecCCceecCCCcEEEecC
Q 010556 94 KGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSG 171 (507)
Q Consensus 94 qglI~-~~FSl~L~~~~~~~G~L~fGgvD~s~-~~~~~~~~~~~~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~aiIDSG 171 (507)
+|+|+ +.||+||.+.+..+|.|+|||+|+++ .....|.+.....+|.|++++|.||++.+..+ +..++||||
T Consensus 140 qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~------~~~~ivDSG 213 (320)
T cd05488 140 QGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELELE------NTGAAIDTG 213 (320)
T ss_pred cCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEeccC------CCeEEEcCC
Confidence 99997 67999999865668999999999876 34455555556789999999999999877542 357999999
Q ss_pred cceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECCCeEEEeCcCCceEEeec
Q 010556 172 TTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMK 251 (507)
Q Consensus 172 Ts~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~dYi~~~~~ 251 (507)
|+++++|++++++|.+++.+... ....+..+|. +. ..+|.|+|+| +|+++.|+|++|+.+.
T Consensus 214 tt~~~lp~~~~~~l~~~~~~~~~-------~~~~~~~~C~--------~~-~~~P~i~f~f-~g~~~~i~~~~y~~~~-- 274 (320)
T cd05488 214 TSLIALPSDLAEMLNAEIGAKKS-------WNGQYTVDCS--------KV-DSLPDLTFNF-DGYNFTLGPFDYTLEV-- 274 (320)
T ss_pred cccccCCHHHHHHHHHHhCCccc-------cCCcEEeecc--------cc-ccCCCEEEEE-CCEEEEECHHHheecC--
Confidence 99999999999999888743221 1223444563 22 5799999999 7999999999999854
Q ss_pred cCCcEEEEEEEcC------CCCeeecHHHhheEEEEEECCCCEEEEEe
Q 010556 252 VSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (507)
Q Consensus 252 ~~~~~Cl~i~~~~------~~~~ILG~~Flr~~yvVFD~en~rIGFA~ 293 (507)
+..|++.+... .+.||||++|||++|+|||++++|||||+
T Consensus 275 --~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 275 --SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred --CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 45799887653 34699999999999999999999999985
No 14
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.1e-36 Score=305.78 Aligned_cols=237 Identities=33% Similarity=0.662 Sum_probs=191.4
Q ss_pred CCcccccCCCCCC-CCCCCCCCceEEEEeCCCceEEEEEEEEEEEeCCcC-cccccceEEEEEEeecCCC--CCCCcceE
Q 010556 2 SNTYQALKCNPDC-NCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNES-ELVPQRAVFGCENLETGDL--YTQRADGI 77 (507)
Q Consensus 2 SSTy~~v~C~~~C-~C~~~~~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s-~i~~~~~~FG~~~~~s~~~--~~~~~DGI 77 (507)
.|+-.|+.|+..| .| .|.|+++|+|+++++|.+++|+|+++... ....+++.|||+..+.+.+ .....|||
T Consensus 23 GS~~~Wv~c~~~c~~c-----~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGI 97 (273)
T cd05475 23 GSDLTWLQCDAPCTGC-----QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGI 97 (273)
T ss_pred CCCceEEeCCCCCCCC-----cCccEeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEE
Confidence 3667788887545 35 58899999988889999999999997531 1466789999998776543 23468999
Q ss_pred EeecCCCCCHHHHHHHcCCCCccEEEeecCCCCCCceEEeCCCCCCCCceeeecCCCC---CCceEEEEeEEEEcCEeee
Q 010556 78 MGLGRGRLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGITPPPDMVFSHSDPFR---SPYYNIELKELRVAGKPLK 154 (507)
Q Consensus 78 LGLG~~~~S~l~qL~~qglI~~~FSl~L~~~~~~~G~L~fGgvD~s~~~~~~~~~~~~---~~~w~V~l~sI~Vgg~~l~ 154 (507)
||||++..++++||.++++|+++||+||.+ ..+|.|+||+... +...+.|.+... ..+|.|++++|.||++...
T Consensus 98 lGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~--~~~g~l~~G~~~~-~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~ 174 (273)
T cd05475 98 LGLGRGKISLPSQLASQGIIKNVIGHCLSS--NGGGFLFFGDDLV-PSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG 174 (273)
T ss_pred EECCCCCCCHHHHHHhcCCcCceEEEEccC--CCCeEEEECCCCC-CCCCeeecccccCCCCCeEEEeEeEEEECCEECc
Confidence 999999999999999999998889999986 3469999996432 223344443333 3799999999999998543
Q ss_pred cCCceecCCCcEEEecCcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECC
Q 010556 155 VSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGN 234 (507)
Q Consensus 155 l~~~~f~~~~~aiIDSGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~g 234 (507)
..+..++|||||+++++|+++| +|+|+|.|++
T Consensus 175 ------~~~~~~ivDTGTt~t~lp~~~y------------------------------------------~p~i~~~f~~ 206 (273)
T cd05475 175 ------GKGLEVVFDSGSSYTYFNAQAY------------------------------------------FKPLTLKFGK 206 (273)
T ss_pred ------CCCceEEEECCCceEEcCCccc------------------------------------------cccEEEEECC
Confidence 2346899999999999999865 6789999954
Q ss_pred C---eEEEeCcCCceEEeeccCCcEEEEEEEcC----CCCeeecHHHhheEEEEEECCCCEEEEEeccC
Q 010556 235 G---QKLTLSPENYLFRHMKVSGAYCLGIFQNS----DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296 (507)
Q Consensus 235 g---~~~~L~p~dYi~~~~~~~~~~Cl~i~~~~----~~~~ILG~~Flr~~yvVFD~en~rIGFA~s~C 296 (507)
+ ++++|+|++|+..... +..|++++... .+.||||+.|||++|++||++++|||||+++|
T Consensus 207 ~~~~~~~~l~~~~y~~~~~~--~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 207 GWRTRLLEIPPENYLIISEK--GNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CCceeEEEeCCCceEEEcCC--CCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 3 7999999999987543 56899998764 24799999999999999999999999999999
No 15
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.2e-36 Score=311.54 Aligned_cols=246 Identities=23% Similarity=0.431 Sum_probs=198.7
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC-CCCCCcceEEeecCCCCC------HHHHHHH
Q 010556 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRLS------VVDQLVE 93 (507)
Q Consensus 21 ~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~-~~~~~~DGILGLG~~~~S------~l~qL~~ 93 (507)
..|.|++.|++|+ ++|.+++|+|+|++ .+++++.|||+.++.+. +.....|||||||++..+ ++.+|++
T Consensus 67 ~~~~~~i~Y~~g~-~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~ 142 (329)
T cd05485 67 NGTEFAIQYGSGS-LSGFLSTDTVSVGG---VSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVN 142 (329)
T ss_pred CCeEEEEEECCce-EEEEEecCcEEECC---EEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHh
Confidence 3689999999987 69999999999998 57789999999877653 434568999999998654 6899999
Q ss_pred cCCCC-ccEEEeecCCC--CCCceEEeCCCCCCCC-ceeeecCCCCCCceEEEEeEEEEcCEeeecCCceecCCCcEEEe
Q 010556 94 KGVIS-DSFSLCYGGMD--VGGGAMVLGGITPPPD-MVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (507)
Q Consensus 94 qglI~-~~FSl~L~~~~--~~~G~L~fGgvD~s~~-~~~~~~~~~~~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~aiID 169 (507)
||+|+ +.||+||.+.. ..+|.|+|||+|++++ ..+.+.+.....+|.|.++++.++++.+.. .+..++||
T Consensus 143 qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~~------~~~~~iiD 216 (329)
T cd05485 143 QKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFCS------GGCQAIAD 216 (329)
T ss_pred CCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeecC------CCcEEEEc
Confidence 99997 67999998643 2479999999998863 445555555678999999999999986642 34579999
Q ss_pred cCcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECCCeEEEeCcCCceEEe
Q 010556 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (507)
Q Consensus 170 SGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~dYi~~~ 249 (507)
|||+++++|++++++|.+++.+.. . ....+..+|. .. +.+|+|+|+| +++.+.|+|++|+++.
T Consensus 217 SGtt~~~lP~~~~~~l~~~~~~~~-----~--~~~~~~~~C~--------~~-~~~p~i~f~f-gg~~~~i~~~~yi~~~ 279 (329)
T cd05485 217 TGTSLIAGPVDEIEKLNNAIGAKP-----I--IGGEYMVNCS--------AI-PSLPDITFVL-GGKSFSLTGKDYVLKV 279 (329)
T ss_pred cCCcceeCCHHHHHHHHHHhCCcc-----c--cCCcEEEecc--------cc-ccCCcEEEEE-CCEEeEEChHHeEEEe
Confidence 999999999999999998874321 1 1123455663 22 5689999999 8999999999999987
Q ss_pred eccCCcEEEEEEEcC------CCCeeecHHHhheEEEEEECCCCEEEEEe
Q 010556 250 MKVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (507)
Q Consensus 250 ~~~~~~~Cl~i~~~~------~~~~ILG~~Flr~~yvVFD~en~rIGFA~ 293 (507)
......+|+..+... ++.||||++|||++|+|||++++|||||+
T Consensus 280 ~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 280 TQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred cCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 654457899766632 35699999999999999999999999984
No 16
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.1e-36 Score=305.60 Aligned_cols=243 Identities=20% Similarity=0.350 Sum_probs=196.2
Q ss_pred eEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCCCCcceEEeecCCCC-----------CHHHHHH
Q 010556 24 IYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRL-----------SVVDQLV 92 (507)
Q Consensus 24 ~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~~~~~~~DGILGLG~~~~-----------S~l~qL~ 92 (507)
+|++.|++|++++|.+++|+|++++. .+.++.|||+++.. ..|||||||++.. +++++|+
T Consensus 31 ~~~~~Y~~g~~~~G~~~~D~v~~g~~---~~~~~~fg~~~~~~------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~ 101 (295)
T cd05474 31 DFSISYGDGTSASGTWGTDTVSIGGA---TVKNLQFAVANSTS------SDVGVLGIGLPGNEATYGTGYTYPNFPIALK 101 (295)
T ss_pred eeEEEeccCCcEEEEEEEEEEEECCe---EecceEEEEEecCC------CCcceeeECCCCCcccccCCCcCCCHHHHHH
Confidence 69999999888999999999999984 67789999998742 4799999999776 6999999
Q ss_pred HcCCCC-ccEEEeecCCCCCCceEEeCCCCCCCC-ceeeecCCCCC------CceEEEEeEEEEcCEeeecCCceecCCC
Q 010556 93 EKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPPD-MVFSHSDPFRS------PYYNIELKELRVAGKPLKVSPRIFDGGH 164 (507)
Q Consensus 93 ~qglI~-~~FSl~L~~~~~~~G~L~fGgvD~s~~-~~~~~~~~~~~------~~w~V~l~sI~Vgg~~l~l~~~~f~~~~ 164 (507)
++|+|+ ++||+||.+.+...|.|+|||+|+.+. ....+.+.... .+|.|++++|.++++.++.+ ......
T Consensus 102 ~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~--~~~~~~ 179 (295)
T cd05474 102 KQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTT--LLSKNL 179 (295)
T ss_pred HCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccc--ccCCCc
Confidence 999997 679999998655689999999998762 33344333322 78999999999999887532 133567
Q ss_pred cEEEecCcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECCCeEEEeCcCC
Q 010556 165 GTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPEN 244 (507)
Q Consensus 165 ~aiIDSGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~d 244 (507)
.++|||||++++||++++++|.+++.+.... ....+..+|+. . .. |+|+|+| +|.++.|++++
T Consensus 180 ~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~------~~~~~~~~C~~--------~-~~-p~i~f~f-~g~~~~i~~~~ 242 (295)
T cd05474 180 PALLDSGTTLTYLPSDIVDAIAKQLGATYDS------DEGLYVVDCDA--------K-DD-GSLTFNF-GGATISVPLSD 242 (295)
T ss_pred cEEECCCCccEeCCHHHHHHHHHHhCCEEcC------CCcEEEEeCCC--------C-CC-CEEEEEE-CCeEEEEEHHH
Confidence 8999999999999999999999999655431 12345667753 2 23 9999999 78999999999
Q ss_pred ceEEeec--cCCcEEEEEEEcC-CCCeeecHHHhheEEEEEECCCCEEEEEec
Q 010556 245 YLFRHMK--VSGAYCLGIFQNS-DSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (507)
Q Consensus 245 Yi~~~~~--~~~~~Cl~i~~~~-~~~~ILG~~Flr~~yvVFD~en~rIGFA~s 294 (507)
|+++... ..+..|+..+... .+.+|||++|||++|++||++++|||||++
T Consensus 243 ~~~~~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 243 LVLPASTDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred hEeccccCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 9997642 2356776555555 478999999999999999999999999985
No 17
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=5e-36 Score=307.31 Aligned_cols=236 Identities=27% Similarity=0.445 Sum_probs=191.3
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC-CCCCCcceEEeecCCCC------CHHHHHHH
Q 010556 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL------SVVDQLVE 93 (507)
Q Consensus 21 ~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~-~~~~~~DGILGLG~~~~------S~l~qL~~ 93 (507)
..+.+++.|++|+ ++|.+++|+|+|++ .+++++.||+++.+.+. +.....|||||||++.. +++.+|++
T Consensus 65 ~~~~~~i~Yg~G~-~~G~~~~D~v~ig~---~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~ 140 (317)
T cd06098 65 NGTSASIQYGTGS-ISGFFSQDSVTVGD---LVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVE 140 (317)
T ss_pred CCCEEEEEcCCce-EEEEEEeeEEEECC---EEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHh
Confidence 3568899999887 59999999999998 57889999999877553 44557899999999765 37889999
Q ss_pred cCCCC-ccEEEeecCCC--CCCceEEeCCCCCCCC-ceeeecCCCCCCceEEEEeEEEEcCEeeecCCceecCCCcEEEe
Q 010556 94 KGVIS-DSFSLCYGGMD--VGGGAMVLGGITPPPD-MVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (507)
Q Consensus 94 qglI~-~~FSl~L~~~~--~~~G~L~fGgvD~s~~-~~~~~~~~~~~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~aiID 169 (507)
+|+|+ +.||+||++.. ..+|.|+|||+|++++ ....|.+.....+|.|++++|.||++.+.... ....++||
T Consensus 141 qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~----~~~~aivD 216 (317)
T cd06098 141 QGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCA----GGCAAIAD 216 (317)
T ss_pred cCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecC----CCcEEEEe
Confidence 99997 67999998642 3579999999999873 44555554567899999999999999876432 34579999
Q ss_pred cCcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECCCeEEEeCcCCceEEe
Q 010556 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (507)
Q Consensus 170 SGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~dYi~~~ 249 (507)
|||+++++|++++++|. +..+|+. . ..+|+|+|+| +|+.+.|+|++|+.+.
T Consensus 217 TGTs~~~lP~~~~~~i~-------------------~~~~C~~--------~-~~~P~i~f~f-~g~~~~l~~~~yi~~~ 267 (317)
T cd06098 217 SGTSLLAGPTTIVTQIN-------------------SAVDCNS--------L-SSMPNVSFTI-GGKTFELTPEQYILKV 267 (317)
T ss_pred cCCcceeCCHHHHHhhh-------------------ccCCccc--------c-ccCCcEEEEE-CCEEEEEChHHeEEee
Confidence 99999999998776553 2345742 2 4799999999 8999999999999976
Q ss_pred eccCCcEEEEEEEcC------CCCeeecHHHhheEEEEEECCCCEEEEEe
Q 010556 250 MKVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (507)
Q Consensus 250 ~~~~~~~Cl~i~~~~------~~~~ILG~~Flr~~yvVFD~en~rIGFA~ 293 (507)
.......|++.+... ++.||||+.|||++|+|||++++|||||+
T Consensus 268 ~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 268 GEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred cCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 544456899766532 34699999999999999999999999995
No 18
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=3.2e-35 Score=306.80 Aligned_cols=289 Identities=24% Similarity=0.346 Sum_probs=205.4
Q ss_pred CcccccCCCCCCCC------CC----CCCCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCC-
Q 010556 3 NTYQALKCNPDCNC------DN----DRKECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYT- 71 (507)
Q Consensus 3 STy~~v~C~~~C~C------~~----~~~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~~~~- 71 (507)
|+--||.|...|.| .. ....|.|+++|++|+ ++|.+++|+|+|++..... ..+.|+++....+.+..
T Consensus 25 Ss~lWv~~~~~~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~~~-~~~~~~~~~~~~~~~~~~ 102 (364)
T cd05473 25 SSNFAVAAAPHPFIHTYFHRELSSTYRDLGKGVTVPYTQGS-WEGELGTDLVSIPKGPNVT-FRANIAAITESENFFLNG 102 (364)
T ss_pred CcceEEEcCCCccccccCCchhCcCcccCCceEEEEECcce-EEEEEEEEEEEECCCCccc-eEEeeEEEeccccceecc
Confidence 55667777642221 11 135899999999996 5999999999998632111 12345666554443333
Q ss_pred CCcceEEeecCCCC--------CHHHHHHHcCCCCccEEEeecCC---------CCCCceEEeCCCCCCCC-ceeeecCC
Q 010556 72 QRADGIMGLGRGRL--------SVVDQLVEKGVISDSFSLCYGGM---------DVGGGAMVLGGITPPPD-MVFSHSDP 133 (507)
Q Consensus 72 ~~~DGILGLG~~~~--------S~l~qL~~qglI~~~FSl~L~~~---------~~~~G~L~fGgvD~s~~-~~~~~~~~ 133 (507)
...|||||||++.+ +++++|++|+.++++||++|+.. ....|.|+|||+|++++ ..+.|.+.
T Consensus 103 ~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~ 182 (364)
T cd05473 103 SNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPI 182 (364)
T ss_pred cccceeeeecccccccCCCCCCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEec
Confidence 35799999999754 48899999999878899988631 12479999999998863 33445444
Q ss_pred CCCCceEEEEeEEEEcCEeeecCCceecCCCcEEEecCcceEEechHHHHHHHHHHHHhhcccccccCC-CCCccccccC
Q 010556 134 FRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGP-DPNYDDICFS 212 (507)
Q Consensus 134 ~~~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~aiIDSGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~-~~~~~~~C~~ 212 (507)
....+|.|.+++|.|+++.+.++...+. ...++|||||+++++|+++|++|.+++.+..... ..... ...+...|++
T Consensus 183 ~~~~~~~v~l~~i~vg~~~~~~~~~~~~-~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~C~~ 260 (364)
T cd05473 183 REEWYYEVIILKLEVGGQSLNLDCKEYN-YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIE-DFPDGFWLGSQLACWQ 260 (364)
T ss_pred CcceeEEEEEEEEEECCEeccccccccc-CccEEEeCCCcceeCCHHHHHHHHHHHHhhcccc-cCCccccCcceeeccc
Confidence 4567999999999999998876543332 2369999999999999999999999998764311 01100 0112346764
Q ss_pred CCccccccccCCCCeEEEEECC-----CeEEEeCcCCceEEeec-cCCcEEEEEEE-cCCCCeeecHHHhheEEEEEECC
Q 010556 213 GAGRDVSELSKTFPQVDMVFGN-----GQKLTLSPENYLFRHMK-VSGAYCLGIFQ-NSDSTTLLGGIVVRNTLVTYDRG 285 (507)
Q Consensus 213 ~~~~~~~~~~~~lP~I~f~f~g-----g~~~~L~p~dYi~~~~~-~~~~~Cl~i~~-~~~~~~ILG~~Flr~~yvVFD~e 285 (507)
... .....+|+|+|+|++ +.++.|+|++|+..... ..+..|+.+.. ...+.+|||+.|||++|+|||++
T Consensus 261 ~~~----~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~ 336 (364)
T cd05473 261 KGT----TPWEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRA 336 (364)
T ss_pred ccC----chHhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECC
Confidence 211 111369999999954 24789999999986532 12467986332 23567999999999999999999
Q ss_pred CCEEEEEeccCCcc
Q 010556 286 NDKVGFWKTNCSEL 299 (507)
Q Consensus 286 n~rIGFA~s~C~~~ 299 (507)
++|||||+++|...
T Consensus 337 ~~rIGfa~~~C~~~ 350 (364)
T cd05473 337 NKRVGFAVSTCAEH 350 (364)
T ss_pred CCEEeeEecccccc
Confidence 99999999999874
No 19
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=3.8e-35 Score=313.31 Aligned_cols=244 Identities=23% Similarity=0.320 Sum_probs=192.8
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC---CCCCCcceEEeecCCCCC------HHHHH
Q 010556 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD---LYTQRADGIMGLGRGRLS------VVDQL 91 (507)
Q Consensus 21 ~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~---~~~~~~DGILGLG~~~~S------~l~qL 91 (507)
..|.|++.|++|+ ++|.+++|+|+||+ ++++ ..|+|+.+..+. +.....|||||||++.++ ++.+|
T Consensus 193 ~~~~f~i~Yg~Gs-vsG~~~~DtVtiG~---~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L 267 (453)
T PTZ00147 193 DGTKVEMNYVSGT-VSGFFSKDLVTIGN---LSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVEL 267 (453)
T ss_pred CCCEEEEEeCCCC-EEEEEEEEEEEECC---EEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHH
Confidence 4789999999996 69999999999998 4555 579998876541 234468999999998653 78899
Q ss_pred HHcCCCC-ccEEEeecCCCCCCceEEeCCCCCCC-CceeeecCCCCCCceEEEEeEEEEcCEeeecCCceecCCCcEEEe
Q 010556 92 VEKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (507)
Q Consensus 92 ~~qglI~-~~FSl~L~~~~~~~G~L~fGgvD~s~-~~~~~~~~~~~~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~aiID 169 (507)
.+||+|+ ++||+||.+.+...|.|+|||+|+++ .....|.+.....+|.|.++ +.+++... .+..++||
T Consensus 268 ~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~~--------~~~~aIiD 338 (453)
T PTZ00147 268 KNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVSS--------EKANVIVD 338 (453)
T ss_pred HHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEec--------CceeEEEC
Confidence 9999997 57999998765668999999999986 34455555456779999998 57776432 24589999
Q ss_pred cCcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECCCeEEEeCcCCceEEe
Q 010556 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (507)
Q Consensus 170 SGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~dYi~~~ 249 (507)
|||+++++|+++++++.+++.+... ...+.+..+|+. ..+|+|+|.| +|..++|+|++|+...
T Consensus 339 SGTsli~lP~~~~~ai~~~l~~~~~------~~~~~y~~~C~~----------~~lP~~~f~f-~g~~~~L~p~~yi~~~ 401 (453)
T PTZ00147 339 SGTSVITVPTEFLNKFVESLDVFKV------PFLPLYVTTCNN----------TKLPTLEFRS-PNKVYTLEPEYYLQPI 401 (453)
T ss_pred CCCchhcCCHHHHHHHHHHhCCeec------CCCCeEEEeCCC----------CCCCeEEEEE-CCEEEEECHHHheecc
Confidence 9999999999999999988843210 112234566742 4699999999 7999999999999865
Q ss_pred eccCCcEEEEEEEcC---CCCeeecHHHhheEEEEEECCCCEEEEEecc
Q 010556 250 MKVSGAYCLGIFQNS---DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTN 295 (507)
Q Consensus 250 ~~~~~~~Cl~i~~~~---~~~~ILG~~Flr~~yvVFD~en~rIGFA~s~ 295 (507)
.+.....|+..+... .+.||||++|||++|+|||++++|||||+++
T Consensus 402 ~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 402 EDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred ccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 443346798766543 3579999999999999999999999999985
No 20
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=5.6e-35 Score=311.61 Aligned_cols=244 Identities=23% Similarity=0.346 Sum_probs=191.3
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecC--C-CCCCCcceEEeecCCCC------CHHHHH
Q 010556 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETG--D-LYTQRADGIMGLGRGRL------SVVDQL 91 (507)
Q Consensus 21 ~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~--~-~~~~~~DGILGLG~~~~------S~l~qL 91 (507)
..|.|++.|++|+ ++|.+++|+|++|+ ++++ ..|+++.+..+ . +....+|||||||++.+ +++++|
T Consensus 192 ~~~~~~i~YG~Gs-v~G~~~~Dtv~iG~---~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L 266 (450)
T PTZ00013 192 DGTKVDITYGSGT-VKGFFSKDLVTLGH---LSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVEL 266 (450)
T ss_pred CCcEEEEEECCce-EEEEEEEEEEEECC---EEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHH
Confidence 4689999999997 79999999999998 4554 57888876542 1 23446899999999765 478999
Q ss_pred HHcCCCC-ccEEEeecCCCCCCceEEeCCCCCCC-CceeeecCCCCCCceEEEEeEEEEcCEeeecCCceecCCCcEEEe
Q 010556 92 VEKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (507)
Q Consensus 92 ~~qglI~-~~FSl~L~~~~~~~G~L~fGgvD~s~-~~~~~~~~~~~~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~aiID 169 (507)
++||+|+ +.||+||.+.+...|.|+|||+|+++ .....|.+.....+|.|+++ +.+|.... .+..++||
T Consensus 267 ~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~--------~~~~aIlD 337 (450)
T PTZ00013 267 KNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM--------QKANVIVD 337 (450)
T ss_pred HhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec--------cccceEEC
Confidence 9999998 56999998755568999999999987 34555555556789999998 66664432 24579999
Q ss_pred cCcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECCCeEEEeCcCCceEEe
Q 010556 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (507)
Q Consensus 170 SGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~dYi~~~ 249 (507)
|||+++++|+++++++.+++.... . ...+.+..+|+. ..+|+|+|.| +|.+++|+|++|+...
T Consensus 338 SGTSli~lP~~~~~~i~~~l~~~~-----~-~~~~~y~~~C~~----------~~lP~i~F~~-~g~~~~L~p~~Yi~~~ 400 (450)
T PTZ00013 338 SGTTTITAPSEFLNKFFANLNVIK-----V-PFLPFYVTTCDN----------KEMPTLEFKS-ANNTYTLEPEYYMNPL 400 (450)
T ss_pred CCCccccCCHHHHHHHHHHhCCee-----c-CCCCeEEeecCC----------CCCCeEEEEE-CCEEEEECHHHheehh
Confidence 999999999999999988874321 1 112234556742 4789999999 7899999999999764
Q ss_pred eccCCcEEEEEEEcC---CCCeeecHHHhheEEEEEECCCCEEEEEecc
Q 010556 250 MKVSGAYCLGIFQNS---DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTN 295 (507)
Q Consensus 250 ~~~~~~~Cl~i~~~~---~~~~ILG~~Flr~~yvVFD~en~rIGFA~s~ 295 (507)
....+..|+..+.+. ++.||||++|||++|+|||++++|||||+++
T Consensus 401 ~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 401 LDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred ccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 433456898776653 4579999999999999999999999999874
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.7e-34 Score=291.75 Aligned_cols=246 Identities=30% Similarity=0.530 Sum_probs=203.1
Q ss_pred CceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC-CCCCCcceEEeecCCC-------CCHHHHHHH
Q 010556 22 ECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGR-------LSVVDQLVE 93 (507)
Q Consensus 22 ~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~-~~~~~~DGILGLG~~~-------~S~l~qL~~ 93 (507)
.+++++.|++|+ ++|.+++|+|+|++ +.+.++.||++.+..+. +.....|||||||++. .+++++|++
T Consensus 57 ~~~~~~~y~~g~-~~G~~~~D~v~ig~---~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~ 132 (317)
T PF00026_consen 57 GKPFSISYGDGS-VSGNLVSDTVSIGG---LTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQ 132 (317)
T ss_dssp EEEEEEEETTEE-EEEEEEEEEEEETT---EEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHH
T ss_pred eeeeeeeccCcc-cccccccceEeeee---ccccccceeccccccccccccccccccccccCCcccccccCCcceecchh
Confidence 577999999988 89999999999999 57788999999987554 3345689999999743 469999999
Q ss_pred cCCCC-ccEEEeecCCCCCCceEEeCCCCCCC-CceeeecCCCCCCceEEEEeEEEEcCEeeecCCceecCCCcEEEecC
Q 010556 94 KGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSG 171 (507)
Q Consensus 94 qglI~-~~FSl~L~~~~~~~G~L~fGgvD~s~-~~~~~~~~~~~~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~aiIDSG 171 (507)
+|+|+ +.||++|++.+...|.|+|||+|+++ .....|.+.....+|.+.+++|.++++.... ..+..++||||
T Consensus 133 ~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~~~-----~~~~~~~~Dtg 207 (317)
T PF00026_consen 133 QGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESVFS-----SSGQQAILDTG 207 (317)
T ss_dssp TTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEEEE-----EEEEEEEEETT
T ss_pred hccccccccceeeeecccccchheeeccccccccCceeccCccccccccccccccccccccccc-----ccceeeecccc
Confidence 99997 67999999876668999999999987 4455666556888999999999999993321 22347999999
Q ss_pred cceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECCCeEEEeCcCCceEEeec
Q 010556 172 TTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMK 251 (507)
Q Consensus 172 Ts~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~dYi~~~~~ 251 (507)
++++++|.+++++|++++...... ..+..+| +.. ..+|.++|.| ++.++.|+|++|+.+...
T Consensus 208 t~~i~lp~~~~~~i~~~l~~~~~~--------~~~~~~c--------~~~-~~~p~l~f~~-~~~~~~i~~~~~~~~~~~ 269 (317)
T PF00026_consen 208 TSYIYLPRSIFDAIIKALGGSYSD--------GVYSVPC--------NST-DSLPDLTFTF-GGVTFTIPPSDYIFKIED 269 (317)
T ss_dssp BSSEEEEHHHHHHHHHHHTTEEEC--------SEEEEET--------TGG-GGSEEEEEEE-TTEEEEEEHHHHEEEESS
T ss_pred cccccccchhhHHHHhhhcccccc--------eeEEEec--------ccc-cccceEEEee-CCEEEEecchHhcccccc
Confidence 999999999999999999655431 2344556 333 5789999999 799999999999999876
Q ss_pred cCCcEEEEEEEc----C-CCCeeecHHHhheEEEEEECCCCEEEEEec
Q 010556 252 VSGAYCLGIFQN----S-DSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (507)
Q Consensus 252 ~~~~~Cl~i~~~----~-~~~~ILG~~Flr~~yvVFD~en~rIGFA~s 294 (507)
.....|+..+.. . .+.++||.+|||++|++||+|++|||||++
T Consensus 270 ~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 270 GNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp TTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 555689988887 2 678999999999999999999999999986
No 22
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.3e-32 Score=276.77 Aligned_cols=212 Identities=18% Similarity=0.301 Sum_probs=169.6
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC-CCCCCcceEEeecCCCC---------CHHHH
Q 010556 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL---------SVVDQ 90 (507)
Q Consensus 21 ~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~-~~~~~~DGILGLG~~~~---------S~l~q 90 (507)
+.|+|.+.|++|+.++|.+++|+|+|++ .+++++.|||++..++. +.....|||||||++.. +++++
T Consensus 55 ~~~~~~i~Y~~G~~~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~ 131 (278)
T cd06097 55 PGATWSISYGDGSSASGIVYTDTVSIGG---VEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFEN 131 (278)
T ss_pred CCcEEEEEeCCCCeEEEEEEEEEEEECC---EEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHH
Confidence 4689999999998889999999999998 57889999999988764 33457899999999754 47889
Q ss_pred HHHcCCCCccEEEeecCCCCCCceEEeCCCCCCC-CceeeecCCCC-CCceEEEEeEEEEcCEeeecCCceecCCCcEEE
Q 010556 91 LVEKGVISDSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFR-SPYYNIELKELRVAGKPLKVSPRIFDGGHGTVL 168 (507)
Q Consensus 91 L~~qglI~~~FSl~L~~~~~~~G~L~fGgvD~s~-~~~~~~~~~~~-~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~aiI 168 (507)
|.+++. ++.||+||.+ ..+|.|+|||+|+++ ...+.|.+... ..+|.|++++|.|+++.... ..+..++|
T Consensus 132 l~~~~~-~~~Fs~~l~~--~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~-----~~~~~~ii 203 (278)
T cd06097 132 ALSSLD-APLFTADLRK--AAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWS-----RSGFSAIA 203 (278)
T ss_pred HHHhcc-CceEEEEecC--CCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceee-----cCCceEEe
Confidence 999865 7789999986 457999999999886 33455554443 68999999999999884321 23568999
Q ss_pred ecCcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECCCeEEEeCcCCceEE
Q 010556 169 DSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFR 248 (507)
Q Consensus 169 DSGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~dYi~~ 248 (507)
||||+++++|++++++|.+++.... .......+..+| +. .+|+|+|+|
T Consensus 204 DSGTs~~~lP~~~~~~l~~~l~g~~-----~~~~~~~~~~~C--------~~---~~P~i~f~~---------------- 251 (278)
T cd06097 204 DTGTTLILLPDAIVEAYYSQVPGAY-----YDSEYGGWVFPC--------DT---TLPDLSFAV---------------- 251 (278)
T ss_pred ecCCchhcCCHHHHHHHHHhCcCCc-----ccCCCCEEEEEC--------CC---CCCCEEEEE----------------
Confidence 9999999999999999988873211 011122344556 32 389999998
Q ss_pred eeccCCcEEEEEEEcCCCCeeecHHHhheEEEEEECCCCEEEEEe
Q 010556 249 HMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (507)
Q Consensus 249 ~~~~~~~~Cl~i~~~~~~~~ILG~~Flr~~yvVFD~en~rIGFA~ 293 (507)
.||||++|||++|+|||++|+|||||+
T Consensus 252 ------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 699999999999999999999999995
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.7e-31 Score=263.94 Aligned_cols=217 Identities=32% Similarity=0.583 Sum_probs=176.3
Q ss_pred CCCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCCCCcceEEeecCCC------CCHHHHHHH
Q 010556 20 RKECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGR------LSVVDQLVE 93 (507)
Q Consensus 20 ~~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~~~~~~~DGILGLG~~~------~S~l~qL~~ 93 (507)
+..|.|++.|+++. ++|.+++|+|+|++. +++++.|||++.....+.....+||||||++. .+++++|.+
T Consensus 55 ~~~~~~~~~Y~~g~-~~g~~~~D~v~~~~~---~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~ 130 (283)
T cd05471 55 DTGCTFSITYGDGS-VTGGLGTDTVTIGGL---TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKS 130 (283)
T ss_pred cCCCEEEEEECCCe-EEEEEEEeEEEECCE---EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHH
Confidence 56899999999874 699999999999994 57899999999887755566789999999988 789999999
Q ss_pred cCCCC-ccEEEeecCC--CCCCceEEeCCCCCCC-CceeeecCCCC--CCceEEEEeEEEEcCEeeecCCceecCCCcEE
Q 010556 94 KGVIS-DSFSLCYGGM--DVGGGAMVLGGITPPP-DMVFSHSDPFR--SPYYNIELKELRVAGKPLKVSPRIFDGGHGTV 167 (507)
Q Consensus 94 qglI~-~~FSl~L~~~--~~~~G~L~fGgvD~s~-~~~~~~~~~~~--~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~ai 167 (507)
++.|. +.||+||.+. ....|.|+|||+|+++ ...+.+.+... ..+|.|.+++|.|+++.... ......++
T Consensus 131 ~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~----~~~~~~~i 206 (283)
T cd05471 131 QGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVIS----SSGGGGAI 206 (283)
T ss_pred CCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeee----cCCCcEEE
Confidence 99987 6799999975 3568999999999985 34444444443 78999999999999974111 12456899
Q ss_pred EecCcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECCCeEEEeCcCCceE
Q 010556 168 LDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLF 247 (507)
Q Consensus 168 IDSGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~dYi~ 247 (507)
|||||++++||++++++|.+++.+.... ....+...| .. .+.+|+|+|+|
T Consensus 207 iDsGt~~~~lp~~~~~~l~~~~~~~~~~------~~~~~~~~~--------~~-~~~~p~i~f~f--------------- 256 (283)
T cd05471 207 VDSGTSLIYLPSSVYDAILKALGAAVSS------SDGGYGVDC--------SP-CDTLPDITFTF--------------- 256 (283)
T ss_pred EecCCCCEeCCHHHHHHHHHHhCCcccc------cCCcEEEeC--------cc-cCcCCCEEEEE---------------
Confidence 9999999999999999999999666542 011112222 22 26899999999
Q ss_pred EeeccCCcEEEEEEEcCCCCeeecHHHhheEEEEEECCCCEEEEEe
Q 010556 248 RHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (507)
Q Consensus 248 ~~~~~~~~~Cl~i~~~~~~~~ILG~~Flr~~yvVFD~en~rIGFA~ 293 (507)
.+|||++|||++|++||++++|||||+
T Consensus 257 -------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 699999999999999999999999985
No 24
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.90 E-value=1.9e-23 Score=194.10 Aligned_cols=154 Identities=33% Similarity=0.628 Sum_probs=120.6
Q ss_pred ceEEEEeEEEEcCEeeecCCcee---cCCCcEEEecCcceEEechHHHHHHHHHHHHhhccccccc-CCCCCccccccCC
Q 010556 138 YYNIELKELRVAGKPLKVSPRIF---DGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIR-GPDPNYDDICFSG 213 (507)
Q Consensus 138 ~w~V~l~sI~Vgg~~l~l~~~~f---~~~~~aiIDSGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~-~~~~~~~~~C~~~ 213 (507)
+|.|++++|+||++++.+++..| ++.+.++|||||++++||+++|++|++++.+++....... .......+.||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 58999999999999999998877 4677899999999999999999999999999987543110 1223457889987
Q ss_pred CccccccccCCCCeEEEEECCCeEEEeCcCCceEEeeccCCcEEEEEEEc---CCCCeeecHHHhheEEEEEECCCCEEE
Q 010556 214 AGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQN---SDSTTLLGGIVVRNTLVTYDRGNDKVG 290 (507)
Q Consensus 214 ~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~dYi~~~~~~~~~~Cl~i~~~---~~~~~ILG~~Flr~~yvVFD~en~rIG 290 (507)
....-+..+..+|+|+|+|.+|.+++|+|++|++.... +.+|+++... .++..|||..+|++++++||++++|||
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~--~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSP--GVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECT--TEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccC--CCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 65323344579999999998899999999999999874 7999999999 378899999999999999999999999
Q ss_pred EEe
Q 010556 291 FWK 293 (507)
Q Consensus 291 FA~ 293 (507)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.68 E-value=1.7e-16 Score=148.07 Aligned_cols=115 Identities=36% Similarity=0.706 Sum_probs=92.9
Q ss_pred CCCcccccCCCC-CC--------CCCCCCCCceEEEEeCCCceEEEEEEEEEEEeCCcC--cccccceEEEEEEeecCCC
Q 010556 1 MSNTYQALKCNP-DC--------NCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNES--ELVPQRAVFGCENLETGDL 69 (507)
Q Consensus 1 ~SSTy~~v~C~~-~C--------~C~~~~~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s--~i~~~~~~FG~~~~~s~~~ 69 (507)
.||||++++|++ .| .|...++.|.|.+.|+|++.++|.+++|+|+++... .....++.|||++...+.+
T Consensus 38 ~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~ 117 (164)
T PF14543_consen 38 KSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF 117 (164)
T ss_dssp TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS
T ss_pred cCCcccccCCCCcchhhcccccccCCCCcCcccceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC
Confidence 599999999986 35 345457899999999999999999999999998742 1456789999999998644
Q ss_pred CCCCcceEEeecCCCCCHHHHHHHcCCCCccEEEeecC-CCCCCceEEeCC
Q 010556 70 YTQRADGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGG-MDVGGGAMVLGG 119 (507)
Q Consensus 70 ~~~~~DGILGLG~~~~S~l~qL~~qglI~~~FSl~L~~-~~~~~G~L~fGg 119 (507)
. ..+||||||+..+||+.||.++ ..++||+||.+ .....|.|+||+
T Consensus 118 ~--~~~GilGLg~~~~Sl~sQl~~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 118 Y--GADGILGLGRGPLSLPSQLASS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp T--TEEEEEE-SSSTTSHHHHHHHH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred c--CCCcccccCCCcccHHHHHHHh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 3 7899999999999999999998 66889999998 446789999996
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=98.44 E-value=7.3e-07 Score=76.71 Aligned_cols=56 Identities=34% Similarity=0.620 Sum_probs=48.0
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCC-CCCcceEEee
Q 010556 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLY-TQRADGIMGL 80 (507)
Q Consensus 21 ~~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~~~-~~~~DGILGL 80 (507)
..|.|.+.|++|+ +.|.+++|+|+|++ +.++++.|||++...+.+. ....||||||
T Consensus 53 ~~~~~~~~Y~~g~-~~g~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 53 NGCTFSITYGTGS-LSGGLSTDTVSIGD---IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCcEEEEEeCCCe-EEEEEEEEEEEECC---EEECCEEEEEEEecCCccccccccccccCC
Confidence 4799999999986 58999999999998 5678999999999887633 4568999998
No 27
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.73 E-value=0.16 Score=45.01 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=23.1
Q ss_pred CCCeeecHHHhheEEEEEECCCCEEE
Q 010556 265 DSTTLLGGIVVRNTLVTYDRGNDKVG 290 (507)
Q Consensus 265 ~~~~ILG~~Flr~~yvVFD~en~rIG 290 (507)
....|||..||+.+-.+.|..+.+|-
T Consensus 98 ~~d~ILG~d~L~~~~~~ID~~~~~i~ 123 (124)
T cd05479 98 DVDFLIGLDMLKRHQCVIDLKENVLR 123 (124)
T ss_pred CcCEEecHHHHHhCCeEEECCCCEEE
Confidence 44589999999999999999999875
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=93.26 E-value=1.5 Score=38.84 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=28.5
Q ss_pred CCCceEEEEeEEEEcCEeeecCCceecCCCcEEEecCcceEEechHHHHHH
Q 010556 135 RSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (507)
Q Consensus 135 ~~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~aiIDSGTs~i~LP~~v~~~l 185 (507)
...+|.++ +.|||+++ ..+||||.+.+.+++++.+++
T Consensus 8 ~~g~~~v~---~~InG~~~-----------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV-----------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE-----------EEEEECCCCcEEcCHHHHHHc
Confidence 34456544 66788855 579999999999999987765
No 29
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=91.83 E-value=0.76 Score=39.80 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.5
Q ss_pred CCCeeecHHHhheEEEEEECCCCEE
Q 010556 265 DSTTLLGGIVVRNTLVTYDRGNDKV 289 (507)
Q Consensus 265 ~~~~ILG~~Flr~~yvVFD~en~rI 289 (507)
.+..+||..||+++-++.|+.++++
T Consensus 83 ~~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 83 VDEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CCccEecHHHHhhCCEEEehhhCcC
Confidence 4578999999999999999987653
No 30
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=86.52 E-value=0.45 Score=42.38 Aligned_cols=47 Identities=21% Similarity=0.506 Sum_probs=18.7
Q ss_pred eeehhhhHHHHHHHHHHHHhHhhhhhhhhhcccccccccccccccc--cccCCC
Q 010556 455 NLVAVVVGIVVTLLLGLSILGLWSVWKRRQEASKTYQPVGAVVPEQ--ELQPLQ 506 (507)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 506 (507)
+...+++||+..+++ +.++-.|+++|+|++....-+| .||. +=.||-
T Consensus 65 ~i~~Ii~gv~aGvIg-~Illi~y~irR~~Kk~~~~~~p----~P~~~d~~~p~~ 113 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIG-IILLISYCIRRLRKKSSSDVQP----LPEEDDTDVPLS 113 (122)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHHHHHHHHS-------------------------
T ss_pred ceeehhHHHHHHHHH-HHHHHHHHHHHHhccCCCCCCC----CCCCCCCCCCcc
Confidence 456667777666644 3455578888888876555555 4554 555553
No 31
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=86.36 E-value=0.15 Score=36.28 Aligned_cols=28 Identities=39% Similarity=0.736 Sum_probs=12.0
Q ss_pred ehhhhHHHHHHHHHHHHhHhhh-hhhhhh
Q 010556 457 VAVVVGIVVTLLLGLSILGLWS-VWKRRQ 484 (507)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 484 (507)
.+|++|+.+.+.+-+.++|++| +|+||+
T Consensus 11 vaIa~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 11 VAIAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred EEEEEEEEechHHHHHHHHHHhheEEecc
Confidence 3444444444444333443333 345453
No 32
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=84.41 E-value=1.3 Score=38.64 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=18.3
Q ss_pred HHhHhhhhhhhhhcccccccccccccccccccCCC
Q 010556 472 SILGLWSVWKRRQEASKTYQPVGAVVPEQELQPLQ 506 (507)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (507)
+.....+.||.+++..+.++... +++.||++
T Consensus 14 ~l~asl~~wr~~~rq~k~~~~~~----~~~~~~~E 44 (107)
T PF15330_consen 14 SLAASLLAWRMKQRQKKAGQYSE----RRSEQPTE 44 (107)
T ss_pred HHHHHHHHHHHHhhhccccCCCC----ccccCCCC
Confidence 33334556766666666665533 67777765
No 33
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=84.09 E-value=4.3 Score=36.70 Aligned_cols=98 Identities=16% Similarity=0.256 Sum_probs=56.1
Q ss_pred cEEEecCcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccC-CCccccccccCCCCeEEEEECCCeEEEeCcC
Q 010556 165 GTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFS-GAGRDVSELSKTFPQVDMVFGNGQKLTLSPE 243 (507)
Q Consensus 165 ~aiIDSGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~-~~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~ 243 (507)
.++||||++..++..+...++.-.+ ..+. . . ..... +....|. ...+.+.+.+ +|..+..
T Consensus 34 ~vLiDSGAThsFIs~~~a~~~~l~~----~~l~---~----~-~~V~~~g~~~~~~---~~~~~~~~~i-~g~~~~~--- 94 (135)
T PF08284_consen 34 SVLIDSGATHSFISSSFAKKLGLPL----EPLP---R----P-IVVSAPGGSINCE---GVCPDVPLSI-QGHEFVV--- 94 (135)
T ss_pred EEEEecCCCcEEccHHHHHhcCCEE----EEcc---C----e-eEEeccccccccc---ceeeeEEEEE-CCeEEEe---
Confidence 5899999999999998766542111 1000 0 0 00000 0001111 2345566666 4444321
Q ss_pred CceEEeeccCCcEEEEEEEcCCCCeeecHHHhheEEEEEECCCCEEEEEec
Q 010556 244 NYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (507)
Q Consensus 244 dYi~~~~~~~~~~Cl~i~~~~~~~~ILG~~Flr~~yvVFD~en~rIGFA~s 294 (507)
+++ ++.-.+-..|||.++|+.+..+-|..+++|-|...
T Consensus 95 dl~-------------vl~l~~~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 95 DLL-------------VLDLGGYDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeE-------------EecccceeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 111 11112335899999999999999999999999743
No 34
>PF15050 SCIMP: SCIMP protein
Probab=83.78 E-value=0.86 Score=40.03 Aligned_cols=12 Identities=25% Similarity=1.068 Sum_probs=10.1
Q ss_pred chheeeeehhhh
Q 010556 450 TWWQRNLVAVVV 461 (507)
Q Consensus 450 ~~~~~~~~~~~~ 461 (507)
.||..|||.++.
T Consensus 2 ~WWr~nFWiiLA 13 (133)
T PF15050_consen 2 SWWRDNFWIILA 13 (133)
T ss_pred chHHhchHHHHH
Confidence 599999998764
No 35
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=83.31 E-value=0.36 Score=37.81 Aligned_cols=32 Identities=31% Similarity=0.654 Sum_probs=1.9
Q ss_pred hhhhHHHHHHHHHHHHhHhhhhhhhhhcccccc
Q 010556 458 AVVVGIVVTLLLGLSILGLWSVWKRRQEASKTY 490 (507)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (507)
+++.|+++.+++.++.+ +++++|.|++.+++|
T Consensus 13 avIaG~Vvgll~ailLI-lf~iyR~rkkdEGSY 44 (64)
T PF01034_consen 13 AVIAGGVVGLLFAILLI-LFLIYRMRKKDEGSY 44 (64)
T ss_dssp -------------------------S------S
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCc
Confidence 45556666666665555 889999999999999
No 36
>PF13650 Asp_protease_2: Aspartyl protease
Probab=80.98 E-value=2.3 Score=34.27 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=24.4
Q ss_pred EEEcCEeeecCCceecCCCcEEEecCcceEEechHHHHHH
Q 010556 146 LRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (507)
Q Consensus 146 I~Vgg~~l~l~~~~f~~~~~aiIDSGTs~i~LP~~v~~~l 185 (507)
+.|||+++ .++||||++.+.+++++++++
T Consensus 3 v~vng~~~-----------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-----------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-----------EEEEcCCCCcEEECHHHHHHc
Confidence 56777755 589999999999999988776
No 37
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=79.89 E-value=5.2 Score=37.46 Aligned_cols=85 Identities=13% Similarity=0.191 Sum_probs=47.0
Q ss_pred cEEEecCcceEEechHHHHHHHHHHHHhhcccccccCCCCCccccccCCCccccccccCCCCeEEEEECCCeEEEeCcCC
Q 010556 165 GTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPEN 244 (507)
Q Consensus 165 ~aiIDSGTs~i~LP~~v~~~l~~ai~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~I~f~f~gg~~~~L~p~d 244 (507)
.++||||++..+.-.++.+.|-=.. ... .+..+.-|-......|+ ..-.+.|.. ++..+.+.
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL~L~~---------~~a-pp~~fRG~vs~~~~~ts----EAv~ld~~i-~n~~i~i~--- 108 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKLELPT---------HDA-PPFRFRGFVSGESATTS----EAVTLDFYI-DNKLIDIA--- 108 (177)
T ss_pred EEEEeCCCccceeehhhHHhhCCcc---------ccC-CCEEEeeeccCCceEEE----EeEEEEEEE-CCeEEEEE---
Confidence 6899999999999999887763221 111 11112222222222222 223455555 44444432
Q ss_pred ceEEeeccCCcEEEEEEEcCCCCeeecHHHhheEEE
Q 010556 245 YLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLV 280 (507)
Q Consensus 245 Yi~~~~~~~~~~Cl~i~~~~~~~~ILG~~Flr~~yv 280 (507)
.-+....+...|+|.|+||+|=.
T Consensus 109 -------------aYV~d~m~~dlIIGnPiL~ryp~ 131 (177)
T PF12384_consen 109 -------------AYVTDNMDHDLIIGNPILDRYPT 131 (177)
T ss_pred -------------EEEeccCCcceEeccHHHhhhHH
Confidence 22333335679999999999754
No 38
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=76.50 E-value=1.5 Score=45.04 Aligned_cols=37 Identities=30% Similarity=0.454 Sum_probs=27.0
Q ss_pred eeeehhhhHHHHHHHHHHHHhHhhhhhhhhhccccccccc
Q 010556 454 RNLVAVVVGIVVTLLLGLSILGLWSVWKRRQEASKTYQPV 493 (507)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (507)
..++.|++|++++.|+- .++..++|+|||.++ -|+++
T Consensus 270 ~~~vPIaVG~~La~lvl-ivLiaYli~Rrr~~~--gYq~~ 306 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVL-IVLIAYLIGRRRSRA--GYQSI 306 (306)
T ss_pred cchHHHHHHHHHHHHHH-HHHHhheeEeccccc--ccccC
Confidence 35788888887766665 345589999999887 67653
No 39
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=75.96 E-value=4.5 Score=33.46 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=25.8
Q ss_pred EEEEcCEeeecCCceecCCCcEEEecCcceEEechHHHHHH
Q 010556 145 ELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (507)
Q Consensus 145 sI~Vgg~~l~l~~~~f~~~~~aiIDSGTs~i~LP~~v~~~l 185 (507)
.+.|+|+.+ ..++|||++.+.++++.+.++
T Consensus 4 ~~~Ing~~i-----------~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL-----------KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE-----------EEEEcCCcceEEeCHHHHHHh
Confidence 467888877 479999999999999998876
No 40
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=74.48 E-value=5 Score=31.97 Aligned_cols=29 Identities=14% Similarity=0.381 Sum_probs=25.0
Q ss_pred EEEcCEeeecCCceecCCCcEEEecCcceEEechHHHHHH
Q 010556 146 LRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (507)
Q Consensus 146 I~Vgg~~l~l~~~~f~~~~~aiIDSGTs~i~LP~~v~~~l 185 (507)
+.|+|..+ .+++|||++..+++++..+.+
T Consensus 13 ~~I~g~~~-----------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-----------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-----------EEEEeCCCcceecCHHHHHHh
Confidence 66788766 489999999999999998887
No 41
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=71.09 E-value=7.3 Score=31.64 Aligned_cols=30 Identities=17% Similarity=0.414 Sum_probs=24.1
Q ss_pred EEEEcCEeeecCCceecCCCcEEEecCcceEEechHHHHHH
Q 010556 145 ELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (507)
Q Consensus 145 sI~Vgg~~l~l~~~~f~~~~~aiIDSGTs~i~LP~~v~~~l 185 (507)
.+.||++.+ .++||||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~-----------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-----------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-----------EEEEECCCCcEEcCHHHHHHc
Confidence 366777655 589999999999999877665
No 42
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=65.16 E-value=9.2 Score=31.39 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=24.7
Q ss_pred EEEcCEeeecCCceecCCCcEEEecCcceEEechHHHHHH
Q 010556 146 LRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (507)
Q Consensus 146 I~Vgg~~l~l~~~~f~~~~~aiIDSGTs~i~LP~~v~~~l 185 (507)
+.|||+.+ ..++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-----------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-----------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-----------EEEEECCCCeEEECHHHhhhc
Confidence 56788866 479999999999999988775
No 43
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=64.84 E-value=59 Score=27.41 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=16.7
Q ss_pred CCCcEEEecCcceEEechHH
Q 010556 162 GGHGTVLDSGTTYAYLPGHA 181 (507)
Q Consensus 162 ~~~~aiIDSGTs~i~LP~~v 181 (507)
.+...+||||+....+|...
T Consensus 8 s~~~fLVDTGA~vSviP~~~ 27 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASS 27 (89)
T ss_pred CCcEEEEeCCCceEeecccc
Confidence 34578999999999999864
No 44
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=64.29 E-value=12 Score=30.26 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=38.1
Q ss_pred CceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCCCCcceEEeecC
Q 010556 22 ECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGR 82 (507)
Q Consensus 22 ~C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~~~~~~~DGILGLG~ 82 (507)
.....+..++|.........+.+++++ ++..++++........ ..|||||+.+
T Consensus 42 ~~~~~~~~~~G~~~~~~~~~~~i~ig~---~~~~~~~~~v~d~~~~-----~~~gIlG~d~ 94 (96)
T cd05483 42 GGKVTVQTANGRVRAARVRLDSLQIGG---ITLRNVPAVVLPGDAL-----GVDGLLGMDF 94 (96)
T ss_pred CCcEEEEecCCCccceEEEcceEEECC---cEEeccEEEEeCCccc-----CCceEeChHH
Confidence 345677777777667777789999998 4667777776644332 4899999863
No 45
>PF15179 Myc_target_1: Myc target protein 1
Probab=63.62 E-value=5.1 Score=37.94 Aligned_cols=36 Identities=28% Similarity=0.575 Sum_probs=26.5
Q ss_pred heeeeehhhhHHHHHHHHHHHHhHhhhhhhhhhcccc
Q 010556 452 WQRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQEASK 488 (507)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (507)
|.+-+++..+.++|.|++|.+++ ++|+|--|.+|+.
T Consensus 18 ~~~lIlaF~vSm~iGLviG~li~-~LltwlSRRRASa 53 (197)
T PF15179_consen 18 WEDLILAFCVSMAIGLVIGALIW-ALLTWLSRRRASA 53 (197)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccc
Confidence 66667777888888888887766 6677866666654
No 46
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=61.37 E-value=3.1 Score=38.39 Aligned_cols=31 Identities=32% Similarity=0.541 Sum_probs=21.1
Q ss_pred eeeehhhhHHHHHHHHHHHHhHhhhhhhhhhc
Q 010556 454 RNLVAVVVGIVVTLLLGLSILGLWSVWKRRQE 485 (507)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (507)
+-++.|++||-+.++++++++ +|+.++||.+
T Consensus 49 nIVIGvVVGVGg~ill~il~l-vf~~c~r~kk 79 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILAL-VFIFCIRRKK 79 (154)
T ss_pred cEEEEEEecccHHHHHHHHHh-heeEEEeccc
Confidence 457888889888888886666 4545444433
No 47
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=60.45 E-value=4 Score=37.40 Aligned_cols=27 Identities=44% Similarity=0.630 Sum_probs=13.7
Q ss_pred ehhhhHHHHHHHHHHHHhHhhhhhhhh
Q 010556 457 VAVVVGIVVTLLLGLSILGLWSVWKRR 483 (507)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (507)
++|++||.+-++|-+.++|..+-||+|
T Consensus 10 v~i~igi~Ll~lLl~cgiGcvwhwkhr 36 (158)
T PF11770_consen 10 VAISIGISLLLLLLLCGIGCVWHWKHR 36 (158)
T ss_pred HHHHHHHHHHHHHHHHhcceEEEeecc
Confidence 445555544444444555555555544
No 48
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=57.26 E-value=6.5 Score=41.50 Aligned_cols=57 Identities=18% Similarity=0.323 Sum_probs=33.4
Q ss_pred cccccchheeeeehhhhHHHHHHHHHHHHhHhhhhhhhhhcccccccccccccccccc
Q 010556 445 PQIKQTWWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQEASKTYQPVGAVVPEQEL 502 (507)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (507)
...+|.||..+...+++.+++.|++| .++|..|-=-|--+...--+=-++++.||||
T Consensus 292 ~~r~r~~~~r~~~c~~~~i~~lL~ig-~~~gFv~AttKpL~~v~v~~I~NVlaS~qEL 348 (387)
T PF12751_consen 292 QYRQRSWFSRFASCIYLSILLLLVIG-FAIGFVFATTKPLTDVQVVSIQNVLASEQEL 348 (387)
T ss_pred hhccccHHhhhhHHHHHHHHHHHHHH-HHHHhhhhcCcccccceEEEeeeeeeccceE
Confidence 34678899999888888887766666 4554443322111111111112377888887
No 49
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=54.25 E-value=15 Score=37.24 Aligned_cols=95 Identities=28% Similarity=0.371 Sum_probs=51.1
Q ss_pred CcceEEEEeeeecCC--ceEEEEEeecCCCCcccchhhHHHHHHHHhhcccccCccccceeEEeeeeccc----------
Q 010556 379 DDIEVHLLNFSSKGH--DYLVRWGIFPDESDNYISNTTALNIILRLREHHMQFPERFGSHQLVKWNIEPQ---------- 446 (507)
Q Consensus 379 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 446 (507)
|...|++.|.+.... .+..+++-|=..-.=-|+|.+.-|.-.- .+-|-|-|+-=.-+++
T Consensus 136 ~PI~V~F~~~~~~~~~~~~~~~Cv~F~~~G~~~~~~~~~~nvC~~---------~~~GHfslVV~~~~~~~~~~~~~~~~ 206 (278)
T PF06697_consen 136 KPILVDFSNVSPAPQPGMSVPKCVTFDLDGSVTFSNMTSPNVCST---------SRQGHFSLVVPSPAPPPAPPPPGAPP 206 (278)
T ss_pred CcEEEEecCCccCCCcccccceEEEEcCCCcEEEeccCCCceeee---------ecCceEEEEEcCCCCCCCCCCccccc
Confidence 455677777665433 3778888876554333555554443221 1357777776322221
Q ss_pred cccchheeeeehhhhHHHHHHHHHHHHhHhhhhhhhh
Q 010556 447 IKQTWWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRR 483 (507)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (507)
.+|+||-.-.+.+++|+++..+|+++.+ ...-||||
T Consensus 207 ~~~~~~W~iv~g~~~G~~~L~ll~~lv~-~~vr~krk 242 (278)
T PF06697_consen 207 RKRSWWWKIVVGVVGGVVLLGLLSLLVA-MLVRYKRK 242 (278)
T ss_pred CCcceeEEEEEEehHHHHHHHHHHHHHH-hhhhhhHH
Confidence 4565555555566777776555554433 33344443
No 50
>PF14979 TMEM52: Transmembrane 52
Probab=54.04 E-value=12 Score=34.23 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=26.7
Q ss_pred eeehhhhHHHHHHHHHHHHhHhhhhhhhhhc
Q 010556 455 NLVAVVVGIVVTLLLGLSILGLWSVWKRRQE 485 (507)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (507)
|+|.+++.+++.|+-|+.+.-+=|-|+|||+
T Consensus 21 yIwLill~~~llLLCG~ta~C~rfCClrk~~ 51 (154)
T PF14979_consen 21 YIWLILLIGFLLLLCGLTASCVRFCCLRKQA 51 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6777888888889999999988889999985
No 51
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=53.30 E-value=33 Score=33.27 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=35.2
Q ss_pred CCCCeEEEEECCCeEEEeCcCCceEEeeccCCcEEEEEEEcCCCCeeecHHHhheEEEEEECCCCEEEEEe
Q 010556 223 KTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (507)
Q Consensus 223 ~~lP~I~f~f~gg~~~~L~p~dYi~~~~~~~~~~Cl~i~~~~~~~~ILG~~Flr~~yvVFD~en~rIGFA~ 293 (507)
...+.+.+.+ ++..|.+|- ++..+ .+-..+||.+|+|.|.=-.+.+ .+|-|..
T Consensus 65 ~~~~~~~i~I-~~~~F~IP~---iYq~~-------------~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 65 KKAKNGKIQI-ADKIFRIPT---IYQQE-------------SGIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred EEecCceEEE-ccEEEeccE---EEEec-------------CCCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 4566777777 666666542 22211 2456899999999888666665 4788865
No 52
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=52.38 E-value=8.2 Score=38.67 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=23.7
Q ss_pred chheeeeehhhhHHHHHHHHHHHHhHhhhhhhhh
Q 010556 450 TWWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRR 483 (507)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (507)
.||.+|.+-++++.++.++.+++..|. +|++|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 247 (249)
T PRK15348 216 KWLMKYPYQLMLSLTGLLLGVGILIGY--FCLRR 247 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHh
Confidence 699999998888888777777666653 35444
No 53
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=51.87 E-value=17 Score=30.21 Aligned_cols=26 Identities=19% Similarity=0.512 Sum_probs=21.4
Q ss_pred EEEEcCEeeecCCceecCCCcEEEecCcceEEechHH
Q 010556 145 ELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHA 181 (507)
Q Consensus 145 sI~Vgg~~l~l~~~~f~~~~~aiIDSGTs~i~LP~~v 181 (507)
.|.++|+.+ .++||||+..+.+++..
T Consensus 9 ~v~i~g~~i-----------~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKI-----------KALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEE-----------EEEEETTBSSEEESSGG
T ss_pred EEeECCEEE-----------EEEEecCCCcceecccc
Confidence 466777766 58999999999999864
No 54
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.16 E-value=10 Score=36.59 Aligned_cols=34 Identities=38% Similarity=0.823 Sum_probs=21.3
Q ss_pred ccchheeeeehhhhHHHHHHHHHHHHhHhhhhhhhhhc
Q 010556 448 KQTWWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQE 485 (507)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (507)
-+.||+++...+++| +++|+..+-.|-.|-.+|-
T Consensus 14 ik~wwkeNGk~li~g----viLg~~~lfGW~ywq~~q~ 47 (207)
T COG2976 14 IKDWWKENGKALIVG----VILGLGGLFGWRYWQSHQV 47 (207)
T ss_pred HHHHHHHCCchhHHH----HHHHHHHHHHHHHHHHHHH
Confidence 356999999766655 4445444445666665543
No 55
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=50.00 E-value=21 Score=38.88 Aligned_cols=40 Identities=30% Similarity=0.420 Sum_probs=25.7
Q ss_pred HHHHHHHhHhhhhhhhhhcccccccccccc---------cccccccCCC
Q 010556 467 LLLGLSILGLWSVWKRRQEASKTYQPVGAV---------VPEQELQPLQ 506 (507)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 506 (507)
.++.++.++++++||+|+.+..-=+|+... +|=+||.|||
T Consensus 165 ~~l~~lvi~~~~~~r~~k~~~~~~e~~~~p~~d~~~~~sspl~~l~pl~ 213 (534)
T KOG3653|consen 165 SLLAALVILAFLGYRQRKNAREEIEPVLIPLEDSGPAPSSPLLELDPLQ 213 (534)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccCcccCCCCCCCCCcccccCCchh
Confidence 334445667889999988776544466543 4556677765
No 56
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=49.77 E-value=17 Score=29.17 Aligned_cols=29 Identities=28% Similarity=0.722 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhcccccc
Q 010556 462 GIVVTLLLGLSILGLWSVWKRRQEASKTY 490 (507)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (507)
|.+++.++-+.+.|+|..||.+++...+-
T Consensus 12 gL~ls~i~V~~~~~~wi~~Ra~~~~DKT~ 40 (72)
T PF13268_consen 12 GLLLSSILVLLVSGIWILWRALRKKDKTA 40 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 66667666667888999999887766554
No 57
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=49.35 E-value=34 Score=33.26 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=30.4
Q ss_pred CCCCceEEEEeEEEEcCEeeecCCceecCCCcEEEecCcceEEechHHHHHH
Q 010556 134 FRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (507)
Q Consensus 134 ~~~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~aiIDSGTs~i~LP~~v~~~l 185 (507)
..+.+|.++ .+|||+.+ ..++|||.|...++++..+.+
T Consensus 101 ~~~GHF~a~---~~VNGk~v-----------~fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 101 SRDGHFEAN---GRVNGKKV-----------DFLVDTGATSVALNEEDARRL 138 (215)
T ss_pred cCCCcEEEE---EEECCEEE-----------EEEEecCcceeecCHHHHHHh
Confidence 355677655 67899988 479999999999999987665
No 58
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]
Probab=48.96 E-value=40 Score=31.40 Aligned_cols=49 Identities=12% Similarity=0.218 Sum_probs=38.4
Q ss_pred cceEEEEEEEEEEeeccCCCCCchHHHHHHHHHhhcccCcceEEEEeeeec
Q 010556 341 GAFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSK 391 (507)
Q Consensus 341 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (507)
...+|+-|-..+.. ..+.|.||..++-+.||+-|+++.+||.+---|..
T Consensus 87 ~g~~i~Nvd~tii~--~~PK~~P~~~amr~~ia~~L~i~~~~invKatT~E 135 (159)
T COG0245 87 KGYRIGNVDITIIA--QRPKLGPYREAMRANIAELLGIPVDRINVKATTTE 135 (159)
T ss_pred hCcEEEeEEEEEEE--ecCcccchHHHHHHHHHHHhCCCchheEEEEeccC
Confidence 45566666444444 89999999999999999999999999988544443
No 59
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=48.88 E-value=75 Score=33.44 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=32.7
Q ss_pred EEEEEEEcCCCCeeecHHHhheEEEEEECCCCEEEEEecc
Q 010556 256 YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTN 295 (507)
Q Consensus 256 ~Cl~i~~~~~~~~ILG~~Flr~~yvVFD~en~rIGFA~s~ 295 (507)
|-+.++...+....||...||++--.-|++++++-++...
T Consensus 308 c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~ 347 (380)
T KOG0012|consen 308 CSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNTE 347 (380)
T ss_pred cceEEecCCCcchhhhHHHHHhccceeecccCeEEecCCC
Confidence 3445555556778999999999999999999999998764
No 60
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=48.25 E-value=6.4 Score=43.37 Aligned_cols=29 Identities=34% Similarity=0.912 Sum_probs=22.6
Q ss_pred ccccCcccc------ceeEEeee----eccccccchhee
Q 010556 426 HMQFPERFG------SHQLVKWN----IEPQIKQTWWQR 454 (507)
Q Consensus 426 ~~~~~~~~~------~~~~~~~~----~~~~~~~~~~~~ 454 (507)
|++=|.-.| ||||++|| -||..+..||-+
T Consensus 443 ri~npafvgimgntrsyklldwnsfnsdepe~rdawwae 481 (1169)
T KOG1031|consen 443 RIHNPAFVGIMGNTRSYKLLDWNSFNSDEPETRDAWWAE 481 (1169)
T ss_pred hcCCcchhccccccccceecccccccCCCcchhhHHHHH
Confidence 456664433 89999998 589999999976
No 61
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=47.71 E-value=17 Score=32.41 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhc
Q 010556 462 GIVVTLLLGLSILGLWSVWKRRQE 485 (507)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~ 485 (507)
+|+|.+++-+++++++.--|||++
T Consensus 6 ~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 6 AIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444444344434444444443
No 62
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=46.25 E-value=16 Score=32.68 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=18.4
Q ss_pred EEEecCcc-eEEechHHHHHH
Q 010556 166 TVLDSGTT-YAYLPGHAFAAF 185 (507)
Q Consensus 166 aiIDSGTs-~i~LP~~v~~~l 185 (507)
.++|||.+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999999887
No 63
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=45.92 E-value=9.4 Score=27.00 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=16.2
Q ss_pred chHHHHHHHHHhhcccCcceEE
Q 010556 363 PNFTELSEFIAHELQVDDIEVH 384 (507)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~ 384 (507)
+..+=.|..+|+|++||.+||.
T Consensus 3 i~asP~ar~la~e~gidl~~v~ 24 (39)
T PF02817_consen 3 IKASPAARKLAAELGIDLSQVK 24 (39)
T ss_dssp CCCSHHHHHHHHHTT--GGGSS
T ss_pred cccCHHHHHHHHHcCCCccccc
Confidence 4556689999999999999874
No 64
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=45.27 E-value=9.6 Score=32.48 Aligned_cols=8 Identities=13% Similarity=0.522 Sum_probs=3.4
Q ss_pred eehhhhHH
Q 010556 456 LVAVVVGI 463 (507)
Q Consensus 456 ~~~~~~~~ 463 (507)
...+++|+
T Consensus 68 iagi~vg~ 75 (96)
T PTZ00382 68 IAGISVAV 75 (96)
T ss_pred EEEEEeeh
Confidence 34444443
No 65
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=44.82 E-value=26 Score=29.39 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.6
Q ss_pred cEEEecCcceEEechHHHHHHH
Q 010556 165 GTVLDSGTTYAYLPGHAFAAFK 186 (507)
Q Consensus 165 ~aiIDSGTs~i~LP~~v~~~l~ 186 (507)
++.+|||++...+|...++.+.
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 6899999999999999888764
No 66
>PF02542 YgbB: YgbB family; InterPro: IPR003526 MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis[]. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The YgbB protein is a putative enzyme of this type [].; GO: 0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process; PDB: 3T80_B 3GHZ_A 2PMP_A 3F6M_A 3FPI_A 3RE3_A 1T0A_C 1W57_A 1W55_A 3B6N_A ....
Probab=44.56 E-value=58 Score=30.34 Aligned_cols=49 Identities=18% Similarity=0.309 Sum_probs=38.3
Q ss_pred ceEEEEEEEEEEeeccCCCCCchHHHHHHHHHhhcccCcceEEEEeeeecC
Q 010556 342 AFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSKG 392 (507)
Q Consensus 342 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (507)
..+|+-| ++.+-...+.|.||..++-+.+|+-|+++.+||.+---|..|
T Consensus 88 g~~i~ni--D~tii~e~PKi~p~~~~m~~~la~~L~~~~~~V~iKatT~E~ 136 (157)
T PF02542_consen 88 GYRIVNI--DITIIAERPKISPYRPAMRENLAKLLGIPPDRVNIKATTTEG 136 (157)
T ss_dssp TEEEEEE--EEEEESSSSTTGGGHHHHHHHHHHHHTS-GGGEEEEEE-TTT
T ss_pred CcEEEEE--EEEEEcCCCccHHHHHHHHHHHHHHhCCCcceEEEEEecCCC
Confidence 4455554 566677899999999999999999999999999886666554
No 67
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=44.32 E-value=30 Score=28.98 Aligned_cols=21 Identities=38% Similarity=0.816 Sum_probs=13.8
Q ss_pred hhhh-hhhhhcccc-cccccccc
Q 010556 476 LWSV-WKRRQEASK-TYQPVGAV 496 (507)
Q Consensus 476 ~~~~-~~~~~~~~~-~~~~~~~~ 496 (507)
+||+ |++|.++.. -|+||=..
T Consensus 50 lwfvCC~kRkrsRrPIYrPvI~~ 72 (94)
T PF05393_consen 50 LWFVCCKKRKRSRRPIYRPVIGL 72 (94)
T ss_pred HHHHHHHHhhhccCCcccccccc
Confidence 4554 777766654 59998653
No 68
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=44.23 E-value=23 Score=36.14 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=27.2
Q ss_pred ehhhhHHHHHHHHHHHHhHhhhhhhhhhccccccccccccccccc
Q 010556 457 VAVVVGIVVTLLLGLSILGLWSVWKRRQEASKTYQPVGAVVPEQE 501 (507)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (507)
+.|.+|+.+.+++-|.++|+.+-+.+|++....|+|....+-|.|
T Consensus 230 VlIslAiALG~v~ll~l~Gii~~~~~r~~~~~~~~p~~~~~d~~~ 274 (281)
T PF12768_consen 230 VLISLAIALGTVFLLVLIGIILAYIRRRRQGYVPAPTSPRIDEDE 274 (281)
T ss_pred EEEehHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccccCccc
Confidence 444445544444444555666655555566677778887777766
No 69
>PF11743 DUF3301: Protein of unknown function (DUF3301); InterPro: IPR021732 This family is conserved in Proteobacteria, but the function is not known.
Probab=41.39 E-value=8 Score=32.98 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=28.0
Q ss_pred HHhHhhhhhhhhhcccccccccccccccccccCC
Q 010556 472 SILGLWSVWKRRQEASKTYQPVGAVVPEQELQPL 505 (507)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (507)
++++.|+.|..|+.++...+=+.-...+++||=|
T Consensus 8 l~~~~~~~w~~~~~~E~A~~~a~~~C~~~~lQlL 41 (97)
T PF11743_consen 8 LALVGWFWWQSRRQRERALQAARRACKRQDLQLL 41 (97)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCcch
Confidence 4666899999999999998877777778888765
No 70
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=39.34 E-value=37 Score=30.37 Aligned_cols=30 Identities=13% Similarity=0.342 Sum_probs=23.8
Q ss_pred EEEEcCEeeecCCceecCCCcEEEecCcceEEechHHHHHH
Q 010556 145 ELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (507)
Q Consensus 145 sI~Vgg~~l~l~~~~f~~~~~aiIDSGTs~i~LP~~v~~~l 185 (507)
.+.+||+.+ .|+||||+..+.++.+..+++
T Consensus 28 ~~~ing~~v-----------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV-----------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE-----------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE-----------EEEEeCCCCccccCHHHHHHc
Confidence 367888877 599999999999999988875
No 71
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=39.34 E-value=24 Score=28.80 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=17.8
Q ss_pred HHHHHHHHhhcccCcceEEEE
Q 010556 366 TELSEFIAHELQVDDIEVHLL 386 (507)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~ 386 (507)
.+|.+|+|+.|+|..++|+|+
T Consensus 43 ~ali~~La~~l~v~ks~i~i~ 63 (77)
T PF02594_consen 43 KALIRFLAKALGVPKSDIEIV 63 (77)
T ss_dssp HHHHHHHHHHCT--TTCEEEC
T ss_pred HHHHHHHHHHhCCCcccEEEE
Confidence 689999999999999999986
No 72
>PF13650 Asp_protease_2: Aspartyl protease
Probab=38.89 E-value=1.9e+02 Score=22.75 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=32.7
Q ss_pred ceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCCCCcceEEeec
Q 010556 23 CIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLG 81 (507)
Q Consensus 23 C~y~i~Y~dgs~~sG~l~~D~vsig~~s~i~~~~~~FG~~~~~s~~~~~~~~DGILGLG 81 (507)
....+.-.+|........-+.+++++ .+..++.|-... .....|||||+-
T Consensus 40 ~~~~~~~~~g~~~~~~~~~~~i~ig~---~~~~~~~~~v~~------~~~~~~~iLG~d 89 (90)
T PF13650_consen 40 VPISVSGAGGSVTVYRGRVDSITIGG---ITLKNVPFLVVD------LGDPIDGILGMD 89 (90)
T ss_pred eeEEEEeCCCCEEEEEEEEEEEEECC---EEEEeEEEEEEC------CCCCCEEEeCCc
Confidence 34555555666556666777899998 455566665554 123579999974
No 73
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=38.16 E-value=1.1e+02 Score=29.71 Aligned_cols=104 Identities=12% Similarity=0.118 Sum_probs=52.6
Q ss_pred HHHHHHhhcccCcceEEEEeeeecCCceEEEEEeecCCCCcccchhhHHHHHHHHhhcccccCccccceeEEeeeecccc
Q 010556 368 LSEFIAHELQVDDIEVHLLNFSSKGHDYLVRWGIFPDESDNYISNTTALNIILRLREHHMQFPERFGSHQLVKWNIEPQI 447 (507)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (507)
|-+-..+..+ ..+-||.=..+.-|...+-+.+..... -.++ +..|.+|+-.|. .+| +-+.+.+-..
T Consensus 25 lC~~~~~~~~--~~~C~l~Laq~~~~~q~Lll~l~~~t~--~~~~------l~~Lk~~~~~L~-e~G---Iq~~s~~~~~ 90 (202)
T PF06365_consen 25 LCRAFKANFN--QDDCSLSLAQSEENQQCLLLVLTNETG--LSPK------LQLLKDHRSDLE-ELG---IQNFSEGDSC 90 (202)
T ss_pred HHHHhcccCC--CCCcEEEEecCCCCcceEEEEeecccC--cccH------HHHHHHHHHHHH-HcC---Cccccccccc
Confidence 3333334434 445566555555666555555544322 2222 677888877774 344 2233333333
Q ss_pred ccchheee--eehhhhHHHHHHHHHHHHhHhhhhhhhhhc
Q 010556 448 KQTWWQRN--LVAVVVGIVVTLLLGLSILGLWSVWKRRQE 485 (507)
Q Consensus 448 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (507)
...|-+.. .+++++.+--.+++.++.+++++.|.||..
T Consensus 91 ~~~~~~~r~~~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~ 130 (202)
T PF06365_consen 91 SHQSSSDRYPTLIALVTSGSFLLLAILLGAGYCCHQRRSW 130 (202)
T ss_pred CCCCcCccceEEEehHHhhHHHHHHHHHHHHHHhhhhccC
Confidence 33355555 333222222125556666777889988854
No 74
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=36.14 E-value=11 Score=33.10 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=1.7
Q ss_pred hhhHHHHHHHHHHHHhHhhhhhhhh
Q 010556 459 VVVGIVVTLLLGLSILGLWSVWKRR 483 (507)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (507)
+-.||++.+|..|+++|-|+..||.
T Consensus 27 aGIGiL~VILgiLLliGCWYckRRS 51 (118)
T PF14991_consen 27 AGIGILIVILGILLLIGCWYCKRRS 51 (118)
T ss_dssp -SSS---------------------
T ss_pred ccceeHHHHHHHHHHHhheeeeecc
Confidence 4457777777778899999987653
No 75
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=35.03 E-value=27 Score=31.77 Aligned_cols=22 Identities=45% Similarity=0.919 Sum_probs=12.7
Q ss_pred HHHHHHhHhhhhhhhhhccccccc
Q 010556 468 LLGLSILGLWSVWKRRQEASKTYQ 491 (507)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~ 491 (507)
++.++++++|+.||++++ ..||
T Consensus 30 ll~~~~~~~~~~~r~~~~--~~yr 51 (146)
T PF14316_consen 30 LLLLLILLLWRLWRRWRR--NRYR 51 (146)
T ss_pred HHHHHHHHHHHHHHHHHc--cHHH
Confidence 334444567777777665 3454
No 76
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=34.95 E-value=36 Score=22.61 Aligned_cols=10 Identities=40% Similarity=0.737 Sum_probs=6.9
Q ss_pred hHhhhhhhhh
Q 010556 474 LGLWSVWKRR 483 (507)
Q Consensus 474 ~~~~~~~~~~ 483 (507)
.|+||+||+|
T Consensus 20 s~~~Li~k~~ 29 (29)
T TIGR03063 20 SGLFLIRKRK 29 (29)
T ss_pred HHHHHhhccC
Confidence 4578887754
No 77
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=33.10 E-value=28 Score=29.95 Aligned_cols=13 Identities=31% Similarity=0.199 Sum_probs=9.6
Q ss_pred HHHhHhhhhhhhh
Q 010556 471 LSILGLWSVWKRR 483 (507)
Q Consensus 471 ~~~~~~~~~~~~~ 483 (507)
|+.++++..||+|
T Consensus 34 l~c~c~~~~~r~r 46 (102)
T PF11669_consen 34 LSCCCACRHRRRR 46 (102)
T ss_pred HHHHHHHHHHHHH
Confidence 4677788888875
No 78
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=30.78 E-value=47 Score=22.06 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=5.8
Q ss_pred Hhhhhhhhhh
Q 010556 475 GLWSVWKRRQ 484 (507)
Q Consensus 475 ~~~~~~~~~~ 484 (507)
+.++.+|||+
T Consensus 24 ~~~~~~~rk~ 33 (34)
T TIGR01167 24 GGLLLRKRKK 33 (34)
T ss_pred HHHHheeccc
Confidence 4566666654
No 79
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=30.73 E-value=21 Score=37.01 Aligned_cols=40 Identities=23% Similarity=0.542 Sum_probs=22.8
Q ss_pred eeeeehhhhHHHHHHHHHHHHhHhhhhhhhhhccc-ccccc
Q 010556 453 QRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQEAS-KTYQP 492 (507)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 492 (507)
|.+++.+++++++.+++...++.+|++||.|.+.. ..|.|
T Consensus 40 ~~~Li~~~~~~~liv~i~V~~l~~~f~~ryR~~~~~a~y~p 80 (315)
T PRK10525 40 QRSLILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSP 80 (315)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHheeEEEEecCCCcCCCCC
Confidence 33444444444444444445556889998886533 56766
No 80
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=30.62 E-value=17 Score=32.54 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHhHhhhhhhhhhcccccccccc
Q 010556 467 LLLGLSILGLWSVWKRRQEASKTYQPVG 494 (507)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
+++++++ |+...||.|++..-+| ||.
T Consensus 90 lVl~lls-g~lv~rrcrrr~~~tt-PIe 115 (129)
T PF12191_consen 90 LVLALLS-GFLVWRRCRRREKFTT-PIE 115 (129)
T ss_dssp ----------------------------
T ss_pred HHHHHHH-HHHHHhhhhccccCCC-ccc
Confidence 3344433 4444444455555555 775
No 81
>PRK01530 hypothetical protein; Reviewed
Probab=29.67 E-value=41 Score=29.22 Aligned_cols=33 Identities=15% Similarity=0.408 Sum_probs=25.8
Q ss_pred HHHHHHHHhhcccCcceEEEEeeeecCCceEEEEEee
Q 010556 366 TELSEFIAHELQVDDIEVHLLNFSSKGHDYLVRWGIF 402 (507)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (507)
.+|.+|+|+.|+|..++|+|+- |..+..+=...
T Consensus 56 ~ali~~LAk~l~v~ks~I~Ivs----G~tSR~K~i~I 88 (105)
T PRK01530 56 EEIINYLAKEWKLSRSNIEIIK----GHTHSLKTILI 88 (105)
T ss_pred HHHHHHHHHHhCCChhhEEEEe----cCCCCceEEEE
Confidence 6899999999999999999974 55555554433
No 82
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.37 E-value=53 Score=25.42 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=12.6
Q ss_pred heeeeehhhhHHHHHHHHHHHHh
Q 010556 452 WQRNLVAVVVGIVVTLLLGLSIL 474 (507)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~ 474 (507)
|+.+ +.+.+-+++++++|..+-
T Consensus 14 ~~~~-~pl~l~il~~f~~G~llg 35 (68)
T PF06305_consen 14 GQFP-LPLGLLILIAFLLGALLG 35 (68)
T ss_pred eecc-chHHHHHHHHHHHHHHHH
Confidence 4444 556666666666665443
No 83
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=28.73 E-value=59 Score=26.80 Aligned_cols=32 Identities=41% Similarity=0.548 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhccccccccc
Q 010556 462 GIVVTLLLGLSILGLWSVWKRRQEASKTYQPV 493 (507)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (507)
|++-.+++-++..|+++.|+|+.+...++|+-
T Consensus 21 ~~~al~~l~~~isGl~l~~p~~~~~~~~~r~~ 52 (88)
T PF13703_consen 21 GILALLLLLLLISGLYLWWPRRWRWFFSLRPK 52 (88)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhcCcccccccC
Confidence 44344444445668888887666655566543
No 84
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=28.61 E-value=66 Score=36.32 Aligned_cols=73 Identities=25% Similarity=0.475 Sum_probs=45.2
Q ss_pred EEeecCCCCcccchhhHHHHHHHHhhcccccCccccceeEEeeeeccccccchheeeeehhhhHHHHHHHHHHHHhHhhh
Q 010556 399 WGIFPDESDNYISNTTALNIILRLREHHMQFPERFGSHQLVKWNIEPQIKQTWWQRNLVAVVVGIVVTLLLGLSILGLWS 478 (507)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (507)
|..|-. -+|+||++-.+.. +-....|+.-|-.++++=.=.|. .++.++++++++-+.++-...
T Consensus 349 Wlf~sE--v~F~S~~an~~~~----~~~~~~P~s~~~~~v~~~~~~~t-----------~~~~~~f~~if~iva~ii~~~ 411 (807)
T KOG1094|consen 349 WLFFSE--VSFISDAANNSLL----ALGGTFPESRGYQPVLKVDGSPT-----------AILIIIFVAIFLIVALIIALM 411 (807)
T ss_pred eEEEEE--EEEeechhhhcch----hhcCCCCCccccceeEEEcCCCc-----------eehHHHHHHHHHHHHHHHHHH
Confidence 777753 4678877654433 33477887777766664332222 355677777777766666667
Q ss_pred hhhhhhcccc
Q 010556 479 VWKRRQEASK 488 (507)
Q Consensus 479 ~~~~~~~~~~ 488 (507)
+||||..-..
T Consensus 412 L~R~rr~~~k 421 (807)
T KOG1094|consen 412 LWRWRRLLSK 421 (807)
T ss_pred HHHHHHHHhh
Confidence 7887655443
No 85
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=28.46 E-value=69 Score=27.88 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=23.6
Q ss_pred ehhhhHHHHHHHHHHHHhHhhhhhhhhhcccccc
Q 010556 457 VAVVVGIVVTLLLGLSILGLWSVWKRRQEASKTY 490 (507)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (507)
+..++|+++.++|+.+.+ .|-+-|||.++....
T Consensus 3 Ll~il~llLll~l~asl~-~wr~~~rq~k~~~~~ 35 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLL-AWRMKQRQKKAGQYS 35 (107)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhccccCCC
Confidence 445678888888987777 777766666665553
No 86
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=28.32 E-value=1.6e+02 Score=33.44 Aligned_cols=108 Identities=22% Similarity=0.333 Sum_probs=56.8
Q ss_pred CcceEEEEeeeecCCce-EEEEEeecC-CCCcccchhhHHHHHHHHhhcccccCccccce------eEEeeeeccccccc
Q 010556 379 DDIEVHLLNFSSKGHDY-LVRWGIFPD-ESDNYISNTTALNIILRLREHHMQFPERFGSH------QLVKWNIEPQIKQT 450 (507)
Q Consensus 379 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 450 (507)
.+.-|++.|.+-..+.. -++-..|=. ....=+.-++|-.+|.+|...||-| .+|-. |-++=..+|+.+.
T Consensus 188 Gn~tVQmV~~sRl~G~~nP~EL~YyV~~~~G~pl~a~~AA~~Ln~ld~Q~~Al--~LGy~V~~~~AqPv~~~a~P~~~s- 264 (684)
T PF12877_consen 188 GNYTVQMVNMSRLEGPDNPVELTYYVEGQNGKPLPAVTAAKDLNLLDSQRMAL--ILGYRVQGIVAQPVEKQAEPPAKS- 264 (684)
T ss_pred cceEEEEEEeeeccCCCCceEEEEEEEcCCCcCCcHHHHHHHHhccCHHHHHH--hcCceeccccccccccccCCCCCC-
Confidence 34556777777654443 344444444 4455677789999998887655544 22211 1122233444332
Q ss_pred hheeeeehhhhHHHHHHHHHHHHhHhhhhhhhhhcccccccc
Q 010556 451 WWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQEASKTYQP 492 (507)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (507)
+...+-+++||++.++|-++++ +++.|+--++...-|+|
T Consensus 265 --~~~NlWII~gVlvPv~vV~~Ii-iil~~~LCRk~K~eFqp 303 (684)
T PF12877_consen 265 --PPNNLWIIAGVLVPVLVVLLII-IILYWKLCRKNKLEFQP 303 (684)
T ss_pred --CCCCeEEEehHhHHHHHHHHHH-HHHHHHHhcccccCCCc
Confidence 1111223446666666554443 66667655555666665
No 87
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=27.35 E-value=49 Score=34.09 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=13.4
Q ss_pred EEechHHHHHHHHHHHHhhc
Q 010556 175 AYLPGHAFAAFKDALIKETH 194 (507)
Q Consensus 175 i~LP~~v~~~l~~ai~~~~~ 194 (507)
.|=.+.-.+.+++.|+++..
T Consensus 30 nYDNDPeMK~Vme~F~rqTs 49 (299)
T PF02009_consen 30 NYDNDPEMKSVMENFDRQTS 49 (299)
T ss_pred CCCCcHHHHHHHHHHHHHHH
Confidence 34446667888888886643
No 88
>PF14828 Amnionless: Amnionless
Probab=27.14 E-value=3.3e+02 Score=29.68 Aligned_cols=111 Identities=16% Similarity=0.083 Sum_probs=63.1
Q ss_pred EEEEEEEEEEeecc---CCCCCchHHHHHHHHHhhcccCcceEEEEeeeecCCceEEEEEeecCCCCcccch-hhHHHHH
Q 010556 344 QIGVITFDMSFSLN---NSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSKGHDYLVRWGIFPDESDNYISN-TTALNII 419 (507)
Q Consensus 344 ~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 419 (507)
.=|.+ |.|..+ .-+|+-.-..|-+.|..+=.-+.-|.|+.=..+.+.+.-+.=+|.=++..+=-+. .-|..|+
T Consensus 231 iCGa~---v~~~~~~~~~fdl~~~~~~l~~~~~~~~~~~~v~~~v~kv~~~~~~~~iQiVi~d~g~~sg~~~~~la~~i~ 307 (437)
T PF14828_consen 231 ICGAI---VTLEYSCESTFDLQSYRQRLRHAFLELPQYDEVQMHVSKVWSDQSGNEIQIVITDRGSYSGRAAEFLAREIL 307 (437)
T ss_pred hcceE---EEEeecCCccccHHHHHHHHHHHHhccccccceeEEEEEeecCCCCceEEEEEecCCCcccHHHHHHHHHHH
Confidence 34554 444444 3367777777777766554455778888777777766777766765433222222 1355788
Q ss_pred HHHhhcccccCccccceeEEeeeeccccccchheeeeehhhhHHH
Q 010556 420 LRLREHHMQFPERFGSHQLVKWNIEPQIKQTWWQRNLVAVVVGIV 464 (507)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (507)
..+++|-.. +....++++-.....|=+...-.++..|+
T Consensus 308 ~dl~~~~~~-------~~~~~~~~~~Sg~~~~~~~~~~~v~~~vl 345 (437)
T PF14828_consen 308 KDLAEHGQA-------RGILSATIEVSGAPYSPNVSFGTVVGIVL 345 (437)
T ss_pred HHHHHHHhh-------ccccceEEEeccCcccCCcccceeeeehH
Confidence 888887532 33355666655555454444432343333
No 89
>PRK09459 pspG phage shock protein G; Reviewed
Probab=27.02 E-value=61 Score=26.35 Aligned_cols=19 Identities=16% Similarity=0.450 Sum_probs=11.1
Q ss_pred HhHhhhhhhhhhccccccc
Q 010556 473 ILGLWSVWKRRQEASKTYQ 491 (507)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~ 491 (507)
+.++|++..++++....|+
T Consensus 55 ~v~vW~~r~~~~~~~~~y~ 73 (76)
T PRK09459 55 VVVVWVIRAIKAPKVPRYQ 73 (76)
T ss_pred HHHHHHHHHhhcccccccc
Confidence 3456665555555566665
No 90
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=26.34 E-value=76 Score=25.73 Aligned_cols=53 Identities=19% Similarity=0.323 Sum_probs=35.5
Q ss_pred HHHHHHHhhcccccCccccceeEEeeeeccccccchheeeeehhhhHHHHHHHHH
Q 010556 416 LNIILRLREHHMQFPERFGSHQLVKWNIEPQIKQTWWQRNLVAVVVGIVVTLLLG 470 (507)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (507)
..++.|+.|-++.-....++.+++|.-..|. +..... ..+.+++|.++.+++|
T Consensus 21 ~~Ll~r~~e~~~~~~~~~~~~~ivd~A~~P~-~P~~P~-~~lil~l~~~~Gl~lg 73 (82)
T PF13807_consen 21 ETLLQRYEEARLSKASNVSNVRIVDPAIVPD-KPVSPK-RALILALGLFLGLILG 73 (82)
T ss_pred HHHHHHHHHHHHHHhccCCCceeccccccCC-CCCCCc-HHHHHHHHHHHHHHHH
Confidence 3455788888898899999999999987553 333332 2344455655555555
No 91
>PRK05090 hypothetical protein; Validated
Probab=25.77 E-value=56 Score=27.84 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.7
Q ss_pred HHHHHHHHhhcccCcceEEEE
Q 010556 366 TELSEFIAHELQVDDIEVHLL 386 (507)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~ 386 (507)
.+|.+|+|+.|+|..|+|.|.
T Consensus 49 ~ali~~LAk~l~v~ks~I~i~ 69 (95)
T PRK05090 49 AHLLKFLAKQFRVAKSQVVIE 69 (95)
T ss_pred HHHHHHHHHHhCCChhhEEEE
Confidence 689999999999999999996
No 92
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=25.16 E-value=88 Score=29.36 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=18.8
Q ss_pred hhhcccccccccccccccccccCCC
Q 010556 482 RRQEASKTYQPVGAVVPEQELQPLQ 506 (507)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (507)
||++....|--.+-..-.+|+.||.
T Consensus 121 ~~~rktRkYgvl~~~~~~~Em~pL~ 145 (163)
T PF06679_consen 121 RRNRKTRKYGVLTTRAENVEMAPLE 145 (163)
T ss_pred cccccceeecccCCCcccceecccC
Confidence 3466778897777666788999985
No 93
>KOG4243 consensus Macrophage maturation-associated protein [Defense mechanisms]
Probab=24.64 E-value=14 Score=36.47 Aligned_cols=50 Identities=22% Similarity=0.437 Sum_probs=40.4
Q ss_pred cCccccceeEEeeeeccccccchheeeeehhhhHHHHHHHHHHHHhHhhhhhhhhhc
Q 010556 429 FPERFGSHQLVKWNIEPQIKQTWWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQE 485 (507)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (507)
+|..+|+|.|.. -+.+.| ||+++.+.|+.+++++..|..-=..-|++++|
T Consensus 98 ~PaIl~~~~l~~-----~s~~d~--q~i~awIYG~~lc~LFt~STvfH~~~~~~~hq 147 (298)
T KOG4243|consen 98 VPAILGSALLHR-----LSDDDW--QKITAWIYGMGLCALFTVSTVFHIVSWKKSHQ 147 (298)
T ss_pred hHHHHHHHHHHH-----hhhhHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888765 234444 78999999999999999999888888999886
No 94
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=24.63 E-value=81 Score=20.06 Aligned_cols=8 Identities=63% Similarity=0.484 Sum_probs=3.3
Q ss_pred HHHHHHHh
Q 010556 467 LLLGLSIL 474 (507)
Q Consensus 467 ~~~~~~~~ 474 (507)
+.+|+..+
T Consensus 11 ~~~gl~~l 18 (25)
T PF07589_consen 11 LGLGLLGL 18 (25)
T ss_pred HHHHHHHH
Confidence 34444333
No 95
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=24.53 E-value=48 Score=31.85 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhcc
Q 010556 462 GIVVTLLLGLSILGLWSVWKRRQEA 486 (507)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (507)
++++.+++....+.+|++||.|.+.
T Consensus 18 ~i~~iI~v~V~~~l~~~~~k~r~~~ 42 (201)
T TIGR02866 18 AVATTISLLVAALLAYVVWKFRRKG 42 (201)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccc
Confidence 3333344444455577888877543
No 96
>cd00554 MECDP_synthase MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. This pathway is present in bacteria, plants and some protozoa but is distinct from that used by mammals and Archaea. MECDP_synthase forms a homotrimer, carrying three active sites, each of which is formed in a cleft between pairs of subunits.
Probab=24.45 E-value=1.8e+02 Score=26.98 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=38.3
Q ss_pred ceEEEEEEEEEEeeccCCCCCchHHHHHHHHHhhcccCcceEEEEeeeecC
Q 010556 342 AFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSKG 392 (507)
Q Consensus 342 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (507)
..+++-| ++.+-...+.|.|+..++-+.+|+-|+++..+|.+---|..|
T Consensus 87 g~~i~ni--D~tii~e~PKi~p~~~~m~~~ls~~L~~~~~~V~iKatT~E~ 135 (153)
T cd00554 87 GYEIVNI--DITIIAERPKISPYREAMRANLAELLGIPPSRVNIKATTTEG 135 (153)
T ss_pred CCEEEEE--EEEEEecCCcchHHHHHHHHHHHHHhCCCCceEEEEEecCCC
Confidence 4456555 455556679999999999999999999999999885555444
No 97
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=23.60 E-value=1.1e+02 Score=23.69 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=20.2
Q ss_pred HHhHhhhhhhhhhcccccccccccccccccccC
Q 010556 472 SILGLWSVWKRRQEASKTYQPVGAVVPEQELQP 504 (507)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (507)
+++|.|.--..++++...=.||. ...|++|+|
T Consensus 28 ~~I~a~~hHq~k~~a~~~~~~~~-~~~e~~~~~ 59 (59)
T PF11119_consen 28 SAIGAWVHHQDKKQAQQIEQSVT-FPHETDLSR 59 (59)
T ss_pred HHHhHHHHHHHHHhccccccccc-CccccccCC
Confidence 56667766666666666656766 333777765
No 98
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=22.98 E-value=2.9e+02 Score=22.79 Aligned_cols=49 Identities=18% Similarity=0.145 Sum_probs=34.7
Q ss_pred eeccCCC-CCchHHHHHHHHHhhcccCcceEEEEeeeecCCc--eEEEEEee
Q 010556 354 FSLNNSH-MKPNFTELSEFIAHELQVDDIEVHLLNFSSKGHD--YLVRWGIF 402 (507)
Q Consensus 354 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 402 (507)
+.+.+.- -+|.-.|+-+-+|..|++|.++|-+-+|-+.-.. +...=.|+
T Consensus 3 ~~v~h~g~~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~IY 54 (84)
T PF01282_consen 3 FEVLHPGKPTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKIY 54 (84)
T ss_dssp EEEE-SSSSS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEEe
Confidence 3344444 6899999999999999999999999999877543 34444444
No 99
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=22.80 E-value=75 Score=20.58 Aligned_cols=13 Identities=23% Similarity=-0.153 Sum_probs=8.0
Q ss_pred HHhHhhhhhhhhh
Q 010556 472 SILGLWSVWKRRQ 484 (507)
Q Consensus 472 ~~~~~~~~~~~~~ 484 (507)
..+..++.+|||.
T Consensus 13 ~~l~~l~~~rRr~ 25 (26)
T TIGR03778 13 LGLLGLLGLRRRX 25 (26)
T ss_pred HHHHHHHHHhhcc
Confidence 4455667777763
No 100
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=22.35 E-value=2.1e+02 Score=26.72 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=39.2
Q ss_pred ceEEEEEEEEEEeeccCCCCCchHHHHHHHHHhhcccCcceEEEEeeeecC
Q 010556 342 AFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSKG 392 (507)
Q Consensus 342 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (507)
..+|+-| ++.+-...+.+.|+..++-+.+|+-|+++.++|.+---|..|
T Consensus 90 g~~i~ni--D~tii~e~PKi~p~~~~m~~~la~~L~i~~~~V~iKatT~E~ 138 (159)
T PRK00084 90 GYRIGNV--DITIIAQRPKMAPHIEEMRANIAEDLGIPLDDVNVKATTTEK 138 (159)
T ss_pred CCEEEEE--EEEEEcCCCcchHHHHHHHHHHHHHhCCCcceEEEEEecCCC
Confidence 4566655 445558899999999999999999999999999886555443
No 101
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=22.07 E-value=23 Score=37.52 Aligned_cols=21 Identities=48% Similarity=0.741 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhhh
Q 010556 461 VGIVVTLLLGLSILGLWSVWKRRQ 484 (507)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~ 484 (507)
+|-++.++|| +..|++||||+
T Consensus 353 ~~N~v~lllg---~~~~~~~rk~k 373 (374)
T TIGR03503 353 VGNVVILLLG---GIGFFVWRKKK 373 (374)
T ss_pred hhhhhhhhhh---eeeEEEEEEee
Confidence 3444444444 45789999885
No 102
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.98 E-value=1.2e+02 Score=28.09 Aligned_cols=57 Identities=25% Similarity=0.294 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhcccCcceEEEEeeeecCCceEEEEEeecCCCCcccchhhHHHHHHHHhhcccccCccccceeEEeeee
Q 010556 365 FTELSEFIAHELQVDDIEVHLLNFSSKGHDYLVRWGIFPDESDNYISNTTALNIILRLREHHMQFPERFGSHQLVKWNI 443 (507)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (507)
...+-+.+|++++|+.++|. .|-|+..++.++|-. +. -.|+.+-+.+-+|.|-+=.+
T Consensus 81 ~~~fi~~vA~~~~V~~~~v~-VNst~l~dG~iVki~------~~---------------yYrV~~n~d~~sY~Lek~~l 137 (149)
T PF11694_consen 81 MVHFIESVAKDLGVSKEEVY-VNSTALTDGMIVKIG------DK---------------YYRVIFNDDNNSYTLEKTHL 137 (149)
T ss_pred HHHHHHHHHHHhCCChheEE-EecccccCCeEEEEC------Cc---------------cEEEEEcCCCCeEEEEEEEE
Confidence 44566789999999999996 599999999999854 22 24677777778888766444
No 103
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=21.72 E-value=87 Score=23.56 Aligned_cols=36 Identities=17% Similarity=0.444 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHhHhhhhhhhhhccccccccccccc
Q 010556 459 VVVGIVVTLLLGLSILGLWSVWKRRQEASKTYQPVGAVV 497 (507)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (507)
+.++++|.++.|+.++-+ || +|..-+..|-|-|.+.
T Consensus 9 ~~~~~~I~~lIgfity~m-fV--~K~s~q~~YTP~d~iT 44 (53)
T PF13131_consen 9 ILFTIFIFFLIGFITYKM-FV--KKASPQIYYTPFDSIT 44 (53)
T ss_pred HHHHHHHHHHHHHHHHHh-he--ecCCCceeeccchhee
Confidence 344556666667666633 33 3445566899998653
No 104
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=21.09 E-value=1.6e+02 Score=28.41 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=22.0
Q ss_pred EEeeeeccccccc-hheeeeehhhhHHHHHHHHHHHHhHhhhhhhhhhc
Q 010556 438 LVKWNIEPQIKQT-WWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQE 485 (507)
Q Consensus 438 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (507)
.+.|+++|-...+ =++-..+. .+|+-..+++. ++++.++++|+|.+
T Consensus 162 ~l~W~L~pGe~N~L~~~~w~pn-~lgiG~v~I~~-l~~~~~~l~~~r~~ 208 (209)
T PF11353_consen 162 QLTWKLQPGEINHLEASFWVPN-PLGIGTVLIVL-LILLGFLLRRRRLP 208 (209)
T ss_pred EEEEecCCCceeEEEEEEEecc-HHHHHHHHHHH-HHHHHHHHHHhhcC
Confidence 7899998865332 11111111 22332333333 44445666666643
No 105
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=20.88 E-value=57 Score=32.22 Aligned_cols=30 Identities=27% Similarity=0.727 Sum_probs=21.0
Q ss_pred eeeccccccchheeeeehhhhHHHHHHHHH
Q 010556 441 WNIEPQIKQTWWQRNLVAVVVGIVVTLLLG 470 (507)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (507)
|.++|..+|.||++....+++.+++.+++.
T Consensus 99 ~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~ 128 (260)
T PF03631_consen 99 YGVPPRERRSFWKRRLIALLFLIILGVLLI 128 (260)
T ss_pred hcccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 677778889999998877766544444433
No 106
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=20.67 E-value=6e+02 Score=27.51 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=34.5
Q ss_pred eEEEEEEEEEEeeccCCCCCc-hHHHHHHHHHhhcccCcceEEE
Q 010556 343 FQIGVITFDMSFSLNNSHMKP-NFTELSEFIAHELQVDDIEVHL 385 (507)
Q Consensus 343 ~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 385 (507)
..+..|.+.-.+|+.+++|+| +|.+||+.|..+++=+-+-|-+
T Consensus 115 ~~~a~i~~~~~~~idS~~mtp~~W~~La~~I~~~~~~~~dGvVV 158 (419)
T PRK04183 115 LDIANIRGRVLFNILSENMTPEYWVEIAEAVYEEIKNGADGVVV 158 (419)
T ss_pred cccceEEEEEeccCCchhCCHHHHHHHHHHHHHHhhccCCeEEE
Confidence 335678888899999999998 7999999999988733555554
No 107
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=20.56 E-value=3.3e+02 Score=26.42 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=48.0
Q ss_pred EeCCCCCCCCceeeecCCCCCCceEEEEeEEEEcCEeeecCCceecCCCcEEEec-CcceEEechHHHHHHHHHHHHhh
Q 010556 116 VLGGITPPPDMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDS-GTTYAYLPGHAFAAFKDALIKET 193 (507)
Q Consensus 116 ~fGgvD~s~~~~~~~~~~~~~~~w~V~l~sI~Vgg~~l~l~~~~f~~~~~aiIDS-GTs~i~LP~~v~~~l~~ai~~~~ 193 (507)
.+||.--+++..+....-.....=.+.+++|.++|+-+++. ..+.|. |-.-+|+|..........+.+.+
T Consensus 80 ~i~g~~IPkgt~l~G~~~~~~~Rl~i~I~SI~~~~~IipV~--------L~vYD~DG~eGlyVP~s~~~~a~ke~~~~~ 150 (200)
T PF12508_consen 80 QIGGILIPKGTYLYGVASFQGQRLLITITSIEYGGNIIPVE--------LSVYDLDGQEGLYVPNSAEREAAKEMAANA 150 (200)
T ss_pred EECCEEeCCCCEEEEEEeeeccEEEEEEEEEEECCEEEEEE--------EEEECCCCCcccccCCchHHHHHHHHHHHH
Confidence 34554444433333333456677899999999999988764 345555 78889999988887777776654
No 108
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=20.43 E-value=44 Score=27.51 Aligned_cols=25 Identities=16% Similarity=0.599 Sum_probs=15.9
Q ss_pred ccccchheeeeehhhhHHHHHHHHH
Q 010556 446 QIKQTWWQRNLVAVVVGIVVTLLLG 470 (507)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (507)
-.++.||++.-+.+.+++++.+++.
T Consensus 57 l~r~~~~~~~k~~~i~~~iv~~~~~ 81 (89)
T PF00957_consen 57 LKRKMWWRNYKLYIIIIIIVIIIIL 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHhhhhhhhh
Confidence 3567899998776665554444433
No 109
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=20.41 E-value=2.5e+02 Score=26.13 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=38.7
Q ss_pred cceEEEEEEEEEEeeccCCCCCchHHHHHHHHHhhcccCcceEEEEeeeec
Q 010556 341 GAFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSK 391 (507)
Q Consensus 341 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (507)
...+|+-|-+ .+-...+.|.|+..++-+.+|+-|+++..+|.+---|..
T Consensus 86 ~g~~i~niD~--tii~e~PKi~p~~~~m~~~la~~L~~~~~~V~iKatT~E 134 (155)
T TIGR00151 86 KGYRIGNVDI--TIIAQRPKLLPHIPAMRENIAELLGIPLDSVNVKATTTE 134 (155)
T ss_pred cCCEEEEEEE--EEEcCCCcchHHHHHHHHHHHHHhCCCcceEEEEEecCC
Confidence 3566666644 444789999999999999999999999999987554444
Done!