BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010557
(507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTL--NLSRNKINTIEG--LREMTRLRVLD 455
SHF+ L + L+ N I I + H L NLS+N + +I+ + +L VLD
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353
Query: 456 LSYNRIFRIGHGNILSKP 473
LSYN I +G + L P
Sbjct: 354 LSYNHIRALGDQSFLGLP 371
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 374 ANSVIRSLNSSSAVAHI---AGIGLKAI--PTISHF-----SSLRSVNLSNNFIVHIPTG 423
+N++ +S S +AH AG G I P + F SS+R ++LS+ F+ + +
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284
Query: 424 SMP--KGLHTLNLSRNKINTI--EGLREMTRLRVLDLSYNRIFRIGHGNILSKP 473
K L LNL+ NKIN I E + L+VL+LSYN + + N P
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLR 452
L ++P SH ++LR ++L++N + + +P L L++SRN++ L
Sbjct: 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL-LAPNPDVFVSLS 550
Query: 453 VLDLSYNRI 461
VLD+++N+
Sbjct: 551 VLDITHNKF 559
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 120 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 179
Query: 454 LDLSYNRI 461
L LS N I
Sbjct: 180 LYLSKNHI 187
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 182
Query: 454 LDLSYNRI 461
L LS N I
Sbjct: 183 LYLSKNHI 190
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 121 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 180
Query: 454 LDLSYNRI 461
L LS N I
Sbjct: 181 LYLSKNHI 188
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 182
Query: 454 LDLSYNRI 461
L LS N I
Sbjct: 183 LYLSKNHI 190
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I I L +T+L+
Sbjct: 121 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLARLTKLQN 180
Query: 454 LDLSYNRI 461
L LS N I
Sbjct: 181 LYLSKNHI 188
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 415 NFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI 464
N +VH+P L +L L NKI I L +T+L L L N+I RI
Sbjct: 126 NGLVHLPQ------LESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRI 169
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 366 NLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTG-S 424
+L + L NSV++ + V H+A L + + + ++LS+N + +P +
Sbjct: 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALA 483
Query: 425 MPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRI 461
+ L L S N + ++G+ + RL+ L L NR+
Sbjct: 484 ALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL 520
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 366 NLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTG-S 424
+L + L NSV++ + V H+A L + + + ++LS+N + +P +
Sbjct: 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALA 483
Query: 425 MPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRI 461
+ L L S N + ++G+ + RL+ L L NR+
Sbjct: 484 ALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL 520
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 143 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 202
Query: 454 LDLSYNRI 461
L LS N I
Sbjct: 203 LYLSKNHI 210
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 26/132 (19%)
Query: 331 FEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHI 390
F DD AE + +S ++E+N ++I+ NS I+S+
Sbjct: 16 FSDDAFAETI-------KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-------- 60
Query: 391 AGIGLKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPKGLHTLNLSRNKINTIEGLREMT 449
G++ +P +L S+NLSNN I I P +P + L L+ NK+ I+ L +
Sbjct: 61 ---GIQYLP------NLTSLNLSNNQITDISPIQYLP-NVTKLFLNGNKLTDIKPLANLK 110
Query: 450 RLRVLDLSYNRI 461
L L L N++
Sbjct: 111 NLGWLFLDENKV 122
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 118 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACLTKLQN 177
Query: 454 LDLSYNRI 461
L LS N I
Sbjct: 178 LYLSKNHI 185
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 118 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 177
Query: 454 LDLSYNRI 461
L LS N I
Sbjct: 178 LYLSKNHI 185
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 141 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 200
Query: 454 LDLSYNRI 461
L LS N I
Sbjct: 201 LYLSKNHI 208
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 141 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 200
Query: 454 LDLSYNRI 461
L LS N I
Sbjct: 201 LYLSKNHI 208
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 141 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 200
Query: 454 LDLSYNRI 461
L LS N I
Sbjct: 201 LYLSKNHI 208
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 380 SLNSSSAVAHIA--GIGLKAIPTISHFSSLRSVNLSNNFIVHIPT-GSMPKGLHTLNLSR 436
+L++ A H+A ++ I ++S +LR ++L N I I ++ L L +S
Sbjct: 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102
Query: 437 NKINTIEGLREMTRLRVLDLSYNRI 461
N+I ++ G+ ++ LRVL +S N+I
Sbjct: 103 NQIASLSGIEKLVNLRVLYMSNNKI 127
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 380 SLNSSSAVAHIA--GIGLKAIPTISHFSSLRSVNLSNNFIVHIPT-GSMPKGLHTLNLSR 436
+L++ A H+A ++ I ++S +LR ++L N I I ++ L L +S
Sbjct: 44 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 103
Query: 437 NKINTIEGLREMTRLRVLDLSYNRI 461
N+I ++ G+ ++ LRVL +S N+I
Sbjct: 104 NQIASLSGIEKLVNLRVLYMSNNKI 128
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 40/170 (23%)
Query: 331 FEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHI 390
F DD AE + +S ++E+N ++I+ NS I+S+ + ++
Sbjct: 13 FPDDAFAETI-------KANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNV 65
Query: 391 -----AGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTG-------------------SMP 426
G L I + ++L + L+ N + +P G S+P
Sbjct: 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 427 KG-------LHTLNLSRNKINTI-EGL-REMTRLRVLDLSYNRIFRIGHG 467
G L LNL+ N++ ++ +G+ ++T L LDLSYN++ + G
Sbjct: 126 DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 370 EILHANSVIRSLNSSSAVAHIAGIGL-----KAIPTISHFSSLRSVNLSNNFIVHIPTGS 424
+IL N+ I + + + ++ G+ L I + + ++L + LS+N I I S
Sbjct: 89 DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALS 148
Query: 425 MPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI 464
L LN S N++ ++ L +T L LD+S N++ I
Sbjct: 149 GLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI 188
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
+G+K+I + + ++L +N SNN + I P ++ K + L ++ N+I I L +T L
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL-MNNNQIADITPLANLTNL 109
Query: 452 RVLDLSYNRIFRI 464
L L N+I I
Sbjct: 110 TGLTLFNNQITDI 122
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 392 GIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
G LK I T++ ++L ++L+NN I ++ S L L L N+I+ I L +T L
Sbjct: 226 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 285
Query: 452 RVLDLSYNRIFRI 464
L+L+ N++ I
Sbjct: 286 TNLELNENQLEDI 298
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
I +S +SL+ +N S+N + + + L L++S NK++ I L ++T L L +
Sbjct: 144 ISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 203
Query: 458 YNRIFRIGHGNILS 471
N+I I IL+
Sbjct: 204 NNQISDITPLGILT 217
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
I ++ ++L S+ +NN I I + L L+L+ N++ I L +T L LDL+
Sbjct: 188 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 247
Query: 458 YNRIFRIG 465
N+I +
Sbjct: 248 NNQISNLA 255
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 390 IAGIGLKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPKGLHTLNLSRNKINTIEGLREM 448
+AG + +I I + ++L +NL+ N I I P ++ K L L + NKI I L+ +
Sbjct: 51 VAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVK-LTNLYIGTNKITDISALQNL 109
Query: 449 TRLRVLDLSYNRIFRI 464
T LR L L+ + I I
Sbjct: 110 TNLRELYLNEDNISDI 125
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHI-PTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDL 456
I +++ + L S+ + NN I + P ++ + L L + N+I+ I ++++T+L+ L++
Sbjct: 214 ITPVANXTRLNSLKIGNNKITDLSPLANLSQ-LTWLEIGTNQISDINAVKDLTKLKXLNV 272
Query: 457 SYNRIFRIGHGNILSK 472
N+I I N LS+
Sbjct: 273 GSNQISDISVLNNLSQ 288
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE--GLREMTR 450
I LK + + F+SLR+ L+N V + LH LNL++NKI+ IE +
Sbjct: 358 INLKYLSLSNSFTSLRT--LTNETFVSLAHSP----LHILNLTKNKISKIESDAFSWLGH 411
Query: 451 LRVLDLSYNRI 461
L VLDL N I
Sbjct: 412 LEVLDLGLNEI 422
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE--GLREMTR 450
I LK + + F+SLR+ L+N V + LH LNL++NKI+ IE +
Sbjct: 353 INLKYLSLSNSFTSLRT--LTNETFVSLAHSP----LHILNLTKNKISKIESDAFSWLGH 406
Query: 451 LRVLDLSYNRI 461
L VLDL N I
Sbjct: 407 LEVLDLGLNEI 417
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE--GLREMTR 450
I LK + + F+SLR+ L+N V + LH LNL++NKI+ IE +
Sbjct: 363 INLKYLSLSNSFTSLRT--LTNETFVSLAHSP----LHILNLTKNKISKIESDAFSWLGH 416
Query: 451 LRVLDLSYNRI 461
L VLDL N I
Sbjct: 417 LEVLDLGLNEI 427
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 20/81 (24%)
Query: 401 ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLN------------------LSRNKINTI 442
+ S+LR+++L+NN++ + G + LH N L+ NKI +
Sbjct: 76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135
Query: 443 EGLREMTRLRV--LDLSYNRI 461
L E R RV LDL N I
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEI 156
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 429 LHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTII 488
L LNL N I ++G +L+ LDLS N++ +G + V W+S + L +I
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR-NNKLVLI 229
Query: 489 PNCKRLSCNL 498
R S NL
Sbjct: 230 EKALRFSQNL 239
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
+G+K+I + + ++L +N SNN + I P ++ K + L ++ N+I I L +T L
Sbjct: 56 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL-MNNNQIADITPLANLTNL 114
Query: 452 RVLDLSYNRIFRI 464
L L N+I I
Sbjct: 115 TGLTLFNNQITDI 127
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 392 GIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
G LK I T++ ++L ++L+NN I ++ S L L L N+I+ I L +T L
Sbjct: 230 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 289
Query: 452 RVLDLSYNRIFRI 464
L+L+ N++ I
Sbjct: 290 TNLELNENQLEDI 302
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
I ++ ++L S+ +NN I I + L L+L+ N++ I L +T L LDL+
Sbjct: 192 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 251
Query: 458 YNRI 461
N+I
Sbjct: 252 NNQI 255
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
+G+K+I + + ++L +N SNN + I P ++ K + L ++ N+I I L +T L
Sbjct: 55 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL-MNNNQIADITPLANLTNL 113
Query: 452 RVLDLSYNRIFRI 464
L L N+I I
Sbjct: 114 TGLTLFNNQITDI 126
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 392 GIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
G LK I T++ ++L ++L+NN I ++ S L L L N+I+ I L +T L
Sbjct: 229 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 288
Query: 452 RVLDLSYNRIFRI 464
L+L+ N++ I
Sbjct: 289 TNLELNENQLEDI 301
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
I ++ ++L S+ +NN I I + L L+L+ N++ I L +T L LDL+
Sbjct: 191 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 250
Query: 458 YNRI 461
N+I
Sbjct: 251 NNQI 254
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
+G+K+I + + ++L +N SNN + I P ++ K + L ++ N+I I L +T L
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL-MNNNQIADITPLANLTNL 109
Query: 452 RVLDLSYNRIFRI 464
L L N+I I
Sbjct: 110 TGLTLFNNQITDI 122
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 392 GIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
G LK I T++ ++L ++L+NN I ++ S L L L N+I+ I L +T L
Sbjct: 225 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 284
Query: 452 RVLDLSYNRIFRI 464
L+L+ N++ I
Sbjct: 285 TNLELNENQLEDI 297
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
I ++ ++L S+ +NN I I + L L+L+ N++ I L +T L LDL+
Sbjct: 187 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 246
Query: 458 YNRI 461
N+I
Sbjct: 247 NNQI 250
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
+G+K+I + + ++L +N SNN + I P ++ K + L ++ N+I I L +T L
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL-MNNNQIADITPLANLTNL 109
Query: 452 RVLDLSYNRIFRI 464
L L N+I I
Sbjct: 110 TGLTLFNNQITDI 122
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 392 GIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
G LK I T++ ++L ++L+NN I ++ S L L L N+I+ I L +T L
Sbjct: 225 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 284
Query: 452 RVLDLSYNRIFRI 464
L+L+ N++ I
Sbjct: 285 TNLELNENQLEDI 297
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
I ++ ++L S+ +NN I I + L L+L+ N++ I L +T L LDL+
Sbjct: 187 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 246
Query: 458 YNRI 461
N+I
Sbjct: 247 NNQI 250
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 20/81 (24%)
Query: 401 ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLN------------------LSRNKINTI 442
+ S+LR+++L+NN++ + G + LH N L+ NKI +
Sbjct: 76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135
Query: 443 EGLREMTRLRV--LDLSYNRI 461
L E R RV LDL N I
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEI 156
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 429 LHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTII 488
L LNL N I ++G +L+ LDLS N++ +G + V W+S + + L +I
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLI 229
Query: 489 PNCKRLSCNL 498
R S NL
Sbjct: 230 EKALRFSQNL 239
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 407 LRSVNLSNNFI---VHIPTGSMPKGLHTLNLSRNKINTI-EGLREMTRLRVLDLSYNRIF 462
L+ ++LS+N + P+ P L++LNLS + + +GL +L VLDLSYNR+
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD 287
Query: 463 R 463
R
Sbjct: 288 R 288
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 370 EILHANSVIRSLNSSSAVAHIAGIGL-----KAIPTISHFSSLRSVNLSNNFIVHIPTGS 424
+IL N+ I + + + ++ G+ L I + + ++L + LS+N I I S
Sbjct: 89 DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALS 148
Query: 425 MPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI 464
L L+ S N++ ++ L +T L LD+S N++ I
Sbjct: 149 GLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDI 188
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 392 GIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
G LK I T++ ++L ++L+NN I ++ S L L L N+I+ I L +T L
Sbjct: 226 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 285
Query: 452 RVLDLSYNRIFRI 464
L+L+ N++ I
Sbjct: 286 TNLELNENQLEDI 298
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 22/94 (23%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPK---------------------GLH 430
+G+K+I + + ++L +N SNN + I P ++ K L
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLT 110
Query: 431 TLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI 464
L L N+I I+ L+ +T L L+LS N I I
Sbjct: 111 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI 144
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
I ++ ++L S+ +NN I I + L L+L+ N++ I L +T L LDL+
Sbjct: 188 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 247
Query: 458 YNRIFRIG 465
N+I +
Sbjct: 248 NNQISNLA 255
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 370 EILHANSVIRSLNSSSAVAHIAGIGL-----KAIPTISHFSSLRSVNLSNNFIVHIPTGS 424
+IL N+ I + + + ++ G+ L I + + ++L + LS+N I I S
Sbjct: 89 DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALS 148
Query: 425 MPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI 464
L L+ S N++ ++ L +T L LD+S N++ I
Sbjct: 149 GLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDI 188
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 392 GIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
G LK I T++ ++L ++L+NN I ++ S L L L N+I+ I L +T L
Sbjct: 226 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 285
Query: 452 RVLDLSYNRIFRI 464
L+L+ N++ I
Sbjct: 286 TNLELNENQLEDI 298
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 22/94 (23%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPK---------------------GLH 430
+G+K+I + + ++L +N SNN + I P ++ K L
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLT 110
Query: 431 TLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI 464
L L N+I I+ L+ +T L L+LS N I I
Sbjct: 111 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI 144
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
I ++ ++L S+ +NN I I + L L+L+ N++ I L +T L LDL+
Sbjct: 188 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 247
Query: 458 YNRIFRIG 465
N+I +
Sbjct: 248 NNQISNLA 255
>pdb|1WRA|A Chain A, Crystal Structure Of Phosphorylcholine Esterase Domain Of
The Virulence Factor Choline Binding Protein E From
Streptococcus Pneumoniae
pdb|1WRA|B Chain B, Crystal Structure Of Phosphorylcholine Esterase Domain Of
The Virulence Factor Choline Binding Protein E From
Streptococcus Pneumoniae
Length = 308
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 179 HSGSPMSVTSHFSADRVMLKKHSSSQILPSRSRRLWWKLF 218
H G+ + S + DRV LKK+S S+I + S RLW L+
Sbjct: 89 HIGNVDELLSTYPVDRVYLKKYSDSRI--TNSERLWDNLY 126
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 377 VIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSR 436
++ S + A+A I G P + S+ V+ SN + H+P +P L+LS+
Sbjct: 8 IVGSFHFVCALALIVG---SMTPFSNELESM--VDYSNRNLTHVP-KDLPPRTKALSLSQ 61
Query: 437 NKINTIE--GLREMTRLRVLDLSYNRI 461
N I+ + + ++ LRVL LS+NRI
Sbjct: 62 NSISELRMPDISFLSELRVLRLSHNRI 88
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 423 GSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHG 467
G+ ++ S N+I ++G + RL+ L ++ NRI RIG G
Sbjct: 38 GATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEG 82
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 410 VNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI--EGLREMTRLRVLDLSYNRI 461
V+ S N ++H+P + + LN+S+N I+ + + +++LR+L +S+NRI
Sbjct: 5 VDRSKNGLIHVP-KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI 57
>pdb|2BIB|A Chain A, Crystal Structure Of The Complete Modular Teichioic Acid
Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus
Pneumoniae
Length = 547
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 179 HSGSPMSVTSHFSADRVMLKKHSSSQILPSRSRRLW 214
H G+ + S + DRV LKK+S S+I + S RLW
Sbjct: 90 HIGNVDELLSTYPVDRVYLKKYSDSRI--TNSERLW 123
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 375 NSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPK--GLH 430
N V L S + + ++ G L+++P + +SL +NLS N + +P G K L
Sbjct: 45 NGVFDELTSLTQL-YLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK 103
Query: 431 TLNLSRNKINTI-EGL-REMTRLRVLDLSYNRIFRIGHG 467
L L+ N++ ++ +G+ ++T+L+ L L N++ + G
Sbjct: 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 405 SSLRSVNLSNNFIVHIPTGSM--PKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNR 460
++++S++LS N I +I G + L L L ++INTIEG + L LDLS N
Sbjct: 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85
Query: 461 I 461
+
Sbjct: 86 L 86
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 405 SSLRSVNLSNNFIVHIPTGSM--PKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNR 460
++++S++LS N I +I G + L L L ++INTIEG + L LDLS N
Sbjct: 52 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 111
Query: 461 I 461
+
Sbjct: 112 L 112
>pdb|2CSE|A Chain A, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|B Chain B, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|C Chain C, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|P Chain P, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Q Chain Q, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|R Chain R, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|J Chain J, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|K Chain K, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|L Chain L, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|T Chain T, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 708
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 16/103 (15%)
Query: 286 RQSWDGFQNEVSAVWPQRQWVAFPAESSSFKRVDEWVKDLGMETPFEDDEVAEGVIFPPS 345
RQ+ + FQ +V + P RQ + + ++ K +++W DL + V G + P
Sbjct: 153 RQALNNFQKQVPVITPTRQTMYVDSIQAALKALEKWEIDLRVAQTLLPTNVPIGEVSCP- 211
Query: 346 PETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVA 388
+S + L ++ L +S+IR +AVA
Sbjct: 212 ---------------MQSVVKLLDDQLPDDSLIRRYPKEAAVA 239
>pdb|1JMU|B Chain B, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|D Chain D, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|F Chain F, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
Length = 666
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 16/103 (15%)
Query: 286 RQSWDGFQNEVSAVWPQRQWVAFPAESSSFKRVDEWVKDLGMETPFEDDEVAEGVIFPPS 345
RQ+ + FQ +V + P RQ + + ++ K +++W DL + V G + P
Sbjct: 111 RQALNNFQKQVPVITPTRQTMYVDSIQAALKALEKWEIDLRVAQTLLPTNVPIGEVSCP- 169
Query: 346 PETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVA 388
+S + L ++ L +S+IR +AVA
Sbjct: 170 ---------------MQSVVKLLDDQLPDDSLIRRYPKEAAVA 197
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 427 KGLHTLNLSRNKINTI--EGLREMTRLRVLDLSYNRI 461
K L ++LS N+I+T+ + MT+L L LSYNR+
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
>pdb|1CE2|A Chain A, Structure Of Diferric Buffalo Lactoferrin At 2.5a
Resolution
Length = 689
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 74 VGKEEFDLRNTKSD-YFTTASPEVNAQSVNGAEKDAKKGIDMIQSGHLSDPGVGRTEFWA 132
G++ + LR ++ Y T SP+ + +V +K + +D +Q + G+GR+ W
Sbjct: 67 AGRDPYKLRPVAAEIYGTKESPQTHYYAVAVVKKGSNFQLDQLQGRNSCHTGLGRSAGWN 126
Query: 133 SP 134
P
Sbjct: 127 IP 128
>pdb|1BLF|A Chain A, Structure Of Diferric Bovine Lactoferrin At 2.8 Angstroms
Resolution
Length = 689
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 74 VGKEEFDLRNTKSD-YFTTASPEVNAQSVNGAEKDAKKGIDMIQSGHLSDPGVGRTEFWA 132
G++ + LR ++ Y T SP+ + +V +K + +D +Q G+GR+ W
Sbjct: 67 AGRDPYKLRPVAAEIYGTKESPQTHYYAVAVVKKGSNFQLDQLQGRKSCHTGLGRSAGWI 126
Query: 133 SP 134
P
Sbjct: 127 IP 128
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
L IP+ + L + L NN + + K L L++ NK+ +I L +++L VL
Sbjct: 100 LNGIPS----ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVL 155
Query: 455 DLSYNRIFRIGHGNILSKPVFWLSF 479
DL N I G G K V W+
Sbjct: 156 DLHGNEITNTG-GLTRLKKVNWIDL 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,697,279
Number of Sequences: 62578
Number of extensions: 595487
Number of successful extensions: 1504
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1339
Number of HSP's gapped (non-prelim): 182
length of query: 507
length of database: 14,973,337
effective HSP length: 103
effective length of query: 404
effective length of database: 8,527,803
effective search space: 3445232412
effective search space used: 3445232412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 54 (25.4 bits)