Query 010557
Match_columns 507
No_of_seqs 281 out of 2230
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 01:55:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010557.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010557hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194 Membrane glycoprotein 99.1 4.1E-11 8.9E-16 130.3 2.6 142 361-502 103-255 (873)
2 KOG4194 Membrane glycoprotein 99.1 2.7E-10 5.9E-15 124.1 8.8 125 381-505 76-210 (873)
3 PF14580 LRR_9: Leucine-rich r 99.0 2.7E-10 6E-15 108.4 3.3 118 384-501 20-152 (175)
4 KOG0617 Ras suppressor protein 99.0 2.8E-11 6E-16 116.0 -3.7 121 384-504 57-185 (264)
5 PF14580 LRR_9: Leucine-rich r 98.9 2.1E-10 4.6E-15 109.2 1.6 114 363-476 22-146 (175)
6 KOG0444 Cytoskeletal regulator 98.9 1.4E-10 3E-15 127.0 -0.6 125 377-502 98-232 (1255)
7 KOG0617 Ras suppressor protein 98.9 9.8E-11 2.1E-15 112.3 -2.8 117 384-500 34-158 (264)
8 PLN00113 leucine-rich repeat r 98.9 7.5E-09 1.6E-13 118.9 11.3 121 383-504 118-248 (968)
9 PLN00113 leucine-rich repeat r 98.9 6.6E-09 1.4E-13 119.3 10.6 119 385-503 166-295 (968)
10 KOG0444 Cytoskeletal regulator 98.9 2.3E-10 5E-15 125.3 -1.9 186 304-501 10-206 (1255)
11 PRK15387 E3 ubiquitin-protein 98.8 7.8E-09 1.7E-13 117.7 8.6 119 380-505 339-458 (788)
12 KOG1259 Nischarin, modulator o 98.8 7.2E-10 1.6E-14 113.5 -0.8 121 364-484 288-413 (490)
13 PRK15387 E3 ubiquitin-protein 98.8 1.8E-08 3.9E-13 114.8 9.8 100 381-485 240-357 (788)
14 KOG1259 Nischarin, modulator o 98.8 9.3E-10 2E-14 112.7 -0.7 122 385-506 286-413 (490)
15 PRK15370 E3 ubiquitin-protein 98.7 2.3E-08 5E-13 113.7 8.6 118 382-504 240-379 (754)
16 KOG0472 Leucine-rich repeat pr 98.7 9.1E-10 2E-14 116.0 -2.7 119 386-504 415-540 (565)
17 PRK15370 E3 ubiquitin-protein 98.7 4.1E-08 8.9E-13 111.7 9.0 96 384-484 221-318 (754)
18 KOG0531 Protein phosphatase 1, 98.6 6.8E-09 1.5E-13 109.6 -0.2 116 378-494 91-210 (414)
19 KOG0618 Serine/threonine phosp 98.5 1E-08 2.2E-13 116.4 -1.3 119 384-502 384-510 (1081)
20 KOG0472 Leucine-rich repeat pr 98.5 1.4E-08 3E-13 107.3 -0.7 124 365-489 417-547 (565)
21 PF13855 LRR_8: Leucine rich r 98.5 1.3E-07 2.9E-12 73.7 3.5 56 406-461 2-61 (61)
22 KOG4237 Extracellular matrix p 98.4 1.6E-08 3.4E-13 106.6 -3.6 109 376-484 60-178 (498)
23 KOG0618 Serine/threonine phosp 98.4 3E-08 6.5E-13 112.7 -2.7 120 384-503 360-487 (1081)
24 PLN03150 hypothetical protein; 98.4 8.9E-07 1.9E-11 98.9 8.8 98 385-482 420-527 (623)
25 PF13855 LRR_8: Leucine rich r 98.4 2.3E-07 5E-12 72.4 2.8 56 384-439 2-61 (61)
26 COG4886 Leucine-rich repeat (L 98.3 2.7E-07 5.9E-12 95.6 2.9 120 385-504 165-289 (394)
27 KOG0531 Protein phosphatase 1, 98.3 1.6E-07 3.4E-12 99.2 0.8 121 385-505 74-199 (414)
28 KOG0532 Leucine-rich repeat (L 98.2 1.1E-07 2.5E-12 103.8 -2.0 117 386-503 124-245 (722)
29 KOG0532 Leucine-rich repeat (L 98.2 2.1E-07 4.5E-12 101.8 -0.1 124 358-485 121-249 (722)
30 KOG1859 Leucine-rich repeat pr 98.2 2.4E-08 5.1E-13 111.4 -7.6 105 377-482 182-291 (1096)
31 COG4886 Leucine-rich repeat (L 98.2 8E-07 1.7E-11 92.1 4.0 116 367-482 123-244 (394)
32 PLN03210 Resistant to P. syrin 98.1 2.4E-05 5.1E-10 93.1 13.0 106 375-480 581-691 (1153)
33 KOG3207 Beta-tubulin folding c 98.0 1.5E-06 3.2E-11 92.9 1.5 117 383-499 197-338 (505)
34 KOG1644 U2-associated snRNP A' 98.0 1.1E-05 2.4E-10 79.3 5.9 112 367-478 26-148 (233)
35 cd00116 LRR_RI Leucine-rich re 98.0 4.9E-06 1.1E-10 82.5 3.3 122 383-504 137-290 (319)
36 KOG1859 Leucine-rich repeat pr 97.9 3.7E-07 8.1E-12 102.1 -6.0 119 385-504 166-291 (1096)
37 KOG4237 Extracellular matrix p 97.9 3.3E-06 7.1E-11 89.5 0.4 89 394-482 261-358 (498)
38 PLN03210 Resistant to P. syrin 97.8 0.00015 3.3E-09 86.4 12.2 98 383-480 611-714 (1153)
39 PLN03150 hypothetical protein; 97.7 6.5E-05 1.4E-09 84.2 7.5 86 375-461 435-527 (623)
40 PF12799 LRR_4: Leucine Rich r 97.7 2.7E-05 5.8E-10 58.3 3.0 40 427-466 1-41 (44)
41 KOG1644 U2-associated snRNP A' 97.6 0.0001 2.2E-09 72.6 5.5 99 386-484 22-127 (233)
42 cd00116 LRR_RI Leucine-rich re 97.5 2.8E-05 6E-10 77.1 1.4 123 361-483 82-234 (319)
43 PF12799 LRR_4: Leucine Rich r 97.5 8.1E-05 1.8E-09 55.6 2.5 39 384-422 2-41 (44)
44 KOG4579 Leucine-rich repeat (L 97.3 9.2E-06 2E-10 76.0 -4.7 85 385-469 55-143 (177)
45 KOG3207 Beta-tubulin folding c 97.1 0.00012 2.6E-09 78.6 0.1 145 358-504 144-313 (505)
46 PRK15386 type III secretion pr 96.8 0.0028 6E-08 68.4 7.6 33 449-481 156-188 (426)
47 KOG4579 Leucine-rich repeat (L 96.7 0.00013 2.8E-09 68.5 -2.9 66 401-466 49-117 (177)
48 KOG2739 Leucine-rich acidic nu 96.6 0.00098 2.1E-08 67.5 2.2 81 385-466 45-133 (260)
49 KOG2123 Uncharacterized conser 96.3 0.0001 2.2E-09 75.7 -6.9 78 385-462 21-101 (388)
50 KOG4658 Apoptotic ATPase [Sign 96.1 0.0026 5.6E-08 74.4 1.9 96 384-479 546-651 (889)
51 KOG3665 ZYG-1-like serine/thre 96.0 0.0056 1.2E-07 70.0 3.9 123 360-482 124-262 (699)
52 KOG4658 Apoptotic ATPase [Sign 96.0 0.0043 9.2E-08 72.6 2.9 98 384-481 524-629 (889)
53 KOG2982 Uncharacterized conser 95.9 0.0039 8.4E-08 64.9 2.0 96 366-461 51-158 (418)
54 PRK15386 type III secretion pr 95.4 0.066 1.4E-06 58.1 8.9 94 380-483 69-169 (426)
55 KOG2123 Uncharacterized conser 95.1 0.00087 1.9E-08 69.1 -5.7 92 363-455 22-123 (388)
56 KOG2739 Leucine-rich acidic nu 95.0 0.0087 1.9E-07 60.8 1.0 83 400-482 38-128 (260)
57 PF13306 LRR_5: Leucine rich r 94.9 0.086 1.9E-06 45.6 6.9 91 385-479 14-112 (129)
58 KOG3665 ZYG-1-like serine/thre 94.4 0.013 2.9E-07 67.0 0.5 112 384-496 123-257 (699)
59 KOG1909 Ran GTPase-activating 92.1 0.077 1.7E-06 56.2 1.9 100 383-482 157-282 (382)
60 PF00560 LRR_1: Leucine Rich R 91.6 0.1 2.2E-06 33.4 1.3 21 450-471 1-21 (22)
61 PF13306 LRR_5: Leucine rich r 91.1 0.67 1.5E-05 40.0 6.4 78 400-480 7-91 (129)
62 KOG2982 Uncharacterized conser 90.6 0.22 4.8E-06 52.3 3.3 75 363-438 74-157 (418)
63 KOG1909 Ran GTPase-activating 90.4 0.088 1.9E-06 55.8 0.3 99 384-482 121-253 (382)
64 smart00369 LRR_TYP Leucine-ric 89.9 0.2 4.3E-06 32.9 1.6 23 448-470 1-23 (26)
65 smart00370 LRR Leucine-rich re 89.9 0.2 4.3E-06 32.9 1.6 23 448-470 1-23 (26)
66 smart00370 LRR Leucine-rich re 89.8 0.22 4.8E-06 32.6 1.8 22 404-425 1-22 (26)
67 smart00369 LRR_TYP Leucine-ric 89.8 0.22 4.8E-06 32.6 1.8 22 404-425 1-22 (26)
68 PF13504 LRR_7: Leucine rich r 86.9 0.42 9.1E-06 29.0 1.5 16 450-465 2-17 (17)
69 PF13504 LRR_7: Leucine rich r 84.4 0.64 1.4E-05 28.2 1.4 12 407-418 3-14 (17)
70 PF00560 LRR_1: Leucine Rich R 84.1 0.36 7.9E-06 30.8 0.3 18 406-423 1-18 (22)
71 COG5238 RNA1 Ran GTPase-activa 77.4 1.4 2.9E-05 46.2 1.9 107 377-484 87-228 (388)
72 KOG0473 Leucine-rich repeat pr 76.4 0.074 1.6E-06 54.1 -7.3 78 385-462 44-124 (326)
73 KOG3763 mRNA export factor TAP 75.9 1.2 2.7E-05 49.8 1.2 59 403-462 216-283 (585)
74 KOG0473 Leucine-rich repeat pr 73.0 0.098 2.1E-06 53.2 -7.4 82 400-481 37-122 (326)
75 KOG3763 mRNA export factor TAP 71.3 1.2 2.7E-05 49.8 -0.2 75 427-501 218-313 (585)
76 smart00365 LRR_SD22 Leucine-ri 66.8 4.7 0.0001 27.3 2.0 17 449-465 2-18 (26)
77 smart00364 LRR_BAC Leucine-ric 66.4 3.9 8.4E-05 27.9 1.5 18 383-400 2-19 (26)
78 COG5238 RNA1 Ran GTPase-activa 66.2 2.8 6E-05 43.9 1.1 98 383-480 120-252 (388)
79 smart00365 LRR_SD22 Leucine-ri 64.9 5.5 0.00012 27.0 2.0 16 428-443 3-18 (26)
80 KOG2120 SCF ubiquitin ligase, 61.6 0.66 1.4E-05 48.9 -4.3 79 382-460 233-324 (419)
81 smart00364 LRR_BAC Leucine-ric 53.2 8.2 0.00018 26.4 1.3 17 450-466 3-19 (26)
82 KOG2120 SCF ubiquitin ligase, 46.1 0.73 1.6E-05 48.6 -6.9 96 385-480 212-323 (419)
83 PF13516 LRR_6: Leucine Rich r 45.9 10 0.00022 24.2 0.9 16 448-463 1-16 (24)
84 smart00368 LRR_RI Leucine rich 36.7 28 0.0006 23.4 1.9 12 406-417 3-14 (28)
85 KOG3864 Uncharacterized conser 28.9 5.5 0.00012 39.8 -3.6 71 385-457 103-184 (221)
86 TIGR00864 PCC polycystin catio 26.0 43 0.00093 44.4 2.4 30 411-440 1-32 (2740)
87 TIGR00864 PCC polycystin catio 21.2 56 0.0012 43.4 2.1 31 389-419 1-33 (2740)
No 1
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.08 E-value=4.1e-11 Score=130.35 Aligned_cols=142 Identities=23% Similarity=0.282 Sum_probs=107.1
Q ss_pred ccccccCCccccccchhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCC
Q 010557 361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSR 436 (507)
Q Consensus 361 ~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~ 436 (507)
.+..++++.+.+..++.+......++.|+|.+|.|+.+. .+..++.|+.||||.|.|+.|+...|+ .+|..|+|++
T Consensus 103 nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~ 182 (873)
T KOG4194|consen 103 NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS 182 (873)
T ss_pred cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc
Confidence 344556777777777777777777888888888888886 788888889999999999888888887 6788899999
Q ss_pred CCCCCCc--CCCCCCCccEEEccCCCCcccCCCCCC---CCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCc
Q 010557 437 NKINTIE--GLREMTRLRVLDLSYNRIFRIGHGNIL---SKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSK 502 (507)
Q Consensus 437 NkLs~Lp--~L~~L~sL~~LdLS~N~Is~IP~~~f~---sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n 502 (507)
|+|+.+. .|..|.+|.+|.|+.|+|+.+|...|. .|+.|+|..|+|.++ -.+..|.+|....+..|
T Consensus 183 N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 183 NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred ccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence 9998875 388888888889999999988887666 445678888888553 12333444444344444
No 2
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.07 E-value=2.7e-10 Score=124.09 Aligned_cols=125 Identities=23% Similarity=0.235 Sum_probs=85.8
Q ss_pred cccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCc--CCCCCCCccEEE
Q 010557 381 LNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIE--GLREMTRLRVLD 455 (507)
Q Consensus 381 Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp--~L~~L~sL~~Ld 455 (507)
||...+.|+|++|.|..+. .|.++++|+.++|..|.++.||..... .+|+.|+|.+|.|+.+. .+.-++.|+.||
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 4555667777777777765 677777777777777777777775544 56777777777777764 366777777777
Q ss_pred ccCCCCcccCCCCCC---CCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCccCC
Q 010557 456 LSYNRIFRIGHGNIL---SKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 456 LS~N~Is~IP~~~f~---sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n~~~ 505 (507)
||.|.|+.|+...|+ +++.|+|++|.|..+ ..+..+.+|...-++.|++.
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence 777777777776665 566777777777443 44555556666555555544
No 3
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=2.7e-10 Score=108.43 Aligned_cols=118 Identities=25% Similarity=0.289 Sum_probs=50.3
Q ss_pred CCcEEEccCCCCCCCCCCC-CCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCc-CC-CCCCCccEEEccCCC
Q 010557 384 SSAVAHIAGIGLKAIPTIS-HFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE-GL-REMTRLRVLDLSYNR 460 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP~L~-~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp-~L-~~L~sL~~LdLS~N~ 460 (507)
.++.|+|++|.|+.|..++ .+.+|+.|+|++|.|+.+........|+.|+|++|+|+.+. ++ ..+++|+.|+|++|+
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK 99 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS-
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc
Confidence 3588999999999988776 58899999999999999987555588999999999999985 34 468999999999999
Q ss_pred CcccCC----CCCCCCCEEEcCCCCCCC--------CCCCCCCCcCCeeeCCC
Q 010557 461 IFRIGH----GNILSKPVFWLSFKLFEF--------LTIIPNCKRLSCNLYNS 501 (507)
Q Consensus 461 Is~IP~----~~f~sL~~L~LS~N~Ls~--------L~~L~nL~~LscnlIs~ 501 (507)
|..+.. ..++.|+.|+|.+|.+.. +..+++|+.|+...+..
T Consensus 100 I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 100 ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp --SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccH
Confidence 987655 457789999999998833 34566777777666554
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.96 E-value=2.8e-11 Score=116.00 Aligned_cols=121 Identities=23% Similarity=0.288 Sum_probs=86.4
Q ss_pred CCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCC--CcC-CCCCCCccEEEccC
Q 010557 384 SSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINT--IEG-LREMTRLRVLDLSY 458 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~--Lp~-L~~L~sL~~LdLS~ 458 (507)
+|++|++.+|+|..+| .+..++.|+.|+++.|.+..+|.+... +-|+.|||..|++.. +|+ |.-++.|+.|+|+.
T Consensus 57 nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d 136 (264)
T KOG0617|consen 57 NLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD 136 (264)
T ss_pred hhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC
Confidence 3567777777777777 777777777777777777777665433 567777777777765 565 66677777777777
Q ss_pred CCCcccCC--CCCCCCCEEEcCCCCC-CCCCCCCCCCcCCeeeCCCccC
Q 010557 459 NRIFRIGH--GNILSKPVFWLSFKLF-EFLTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 459 N~Is~IP~--~~f~sL~~L~LS~N~L-s~L~~L~nL~~LscnlIs~n~~ 504 (507)
|.+.-+|. +.+.+|+.|.+..|.+ +.+.+++.|+.|+..+|++|+.
T Consensus 137 ndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 137 NDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred CCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 77777666 4566777777777765 6677778888887777777754
No 5
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=2.1e-10 Score=109.21 Aligned_cols=114 Identities=25% Similarity=0.301 Sum_probs=44.4
Q ss_pred ccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCC--CCCCcEEECCCCCCC
Q 010557 363 SEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSM--PKGLHTLNLSRNKIN 440 (507)
Q Consensus 363 ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf--~~sL~~LdLS~NkLs 440 (507)
..|+|.++.+..+..+...-..|+.|++++|.|+.++.|..++.|+.|+|++|.|+.+..... .++|+.|+|++|+|.
T Consensus 22 ~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 22 RELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp --------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---
T ss_pred ccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCC
Confidence 345666666666555552113467888888888888888888888888888888888865321 257888888888887
Q ss_pred CCc---CCCCCCCccEEEccCCCCcccCC------CCCCCCCEEE
Q 010557 441 TIE---GLREMTRLRVLDLSYNRIFRIGH------GNILSKPVFW 476 (507)
Q Consensus 441 ~Lp---~L~~L~sL~~LdLS~N~Is~IP~------~~f~sL~~L~ 476 (507)
.+. .+..|++|+.|+|.+|.++..+. ..+++|+.|+
T Consensus 102 ~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 102 DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 754 36778888888888888886554 3456666654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.93 E-value=1.4e-10 Score=126.99 Aligned_cols=125 Identities=22% Similarity=0.239 Sum_probs=91.8
Q ss_pred hhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc-CCCCCCCcc
Q 010557 377 VIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE-GLREMTRLR 452 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp-~L~~L~sL~ 452 (507)
.+..| ..|++|+|++|+|+++| .+..-.++..|+||+|.|..||...|. +.|..||||+|++..+| .++.|..|+
T Consensus 98 diF~l-~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 98 DIFRL-KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred hhccc-ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhh
Confidence 34444 34688899999999888 888888899999999999998887775 67788899999998885 488888899
Q ss_pred EEEccCCCCcccCCCCCC---CCCEEEcCCCCC---CCCCCCCCCCcCCeeeCCCc
Q 010557 453 VLDLSYNRIFRIGHGNIL---SKPVFWLSFKLF---EFLTIIPNCKRLSCNLYNSK 502 (507)
Q Consensus 453 ~LdLS~N~Is~IP~~~f~---sL~~L~LS~N~L---s~L~~L~nL~~LscnlIs~n 502 (507)
+|.|++|.+..+--..++ +|..|++++.+- .+|..+..+.+|.-..++.|
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 999999987755444444 555677777543 44555666666554444444
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.89 E-value=9.8e-11 Score=112.27 Aligned_cols=117 Identities=25% Similarity=0.357 Sum_probs=100.4
Q ss_pred CCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCc-CCCCCCCccEEEccCCC
Q 010557 384 SSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIE-GLREMTRLRVLDLSYNR 460 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp-~L~~L~sL~~LdLS~N~ 460 (507)
.++.|.+++|+|+.+| .+..+.+|+.|++++|+|+.+|..... .+|+.|+++.|++..+| +|+.++.|++|||.+|+
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynn 113 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccc
Confidence 4688999999999988 999999999999999999999986544 78999999999999987 59999999999999999
Q ss_pred Ccc--cCCCCCC--CCCEEEcCCCCCCC-CCCCCCCCcCCeeeCC
Q 010557 461 IFR--IGHGNIL--SKPVFWLSFKLFEF-LTIIPNCKRLSCNLYN 500 (507)
Q Consensus 461 Is~--IP~~~f~--sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs 500 (507)
+.. +|...|- .|+.|+|+.|.|+. ++.+++|++|...-+.
T Consensus 114 l~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lr 158 (264)
T KOG0617|consen 114 LNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLR 158 (264)
T ss_pred cccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeec
Confidence 984 6654443 67789999999966 5788888887764443
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.88 E-value=7.5e-09 Score=118.86 Aligned_cols=121 Identities=21% Similarity=0.273 Sum_probs=95.1
Q ss_pred cCCcEEEccCCCCC-CCCCCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC-CcC-CCCCCCccEEEcc
Q 010557 383 SSSAVAHIAGIGLK-AIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT-IEG-LREMTRLRVLDLS 457 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt-~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~-Lp~-L~~L~sL~~LdLS 457 (507)
..|++|++++|.++ .+| ...+++|++|+|++|.+....+..+. .+|+.|+|++|.+.+ +|. +..+++|++|+|+
T Consensus 118 ~~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred CCCCEEECcCCccccccC-ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 45799999999987 444 35688999999999999866554443 789999999999876 554 8889999999999
Q ss_pred CCCCcc-cCC--CCCCCCCEEEcCCCCCC--CCCCCCCCCcCCeeeCCCccC
Q 010557 458 YNRIFR-IGH--GNILSKPVFWLSFKLFE--FLTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 458 ~N~Is~-IP~--~~f~sL~~L~LS~N~Ls--~L~~L~nL~~LscnlIs~n~~ 504 (507)
+|.++. +|. +.+.+|+.|+|++|.+. .+..++++++|....++.|.+
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 999885 454 45668889999999883 466788888888877777654
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.87 E-value=6.6e-09 Score=119.30 Aligned_cols=119 Identities=24% Similarity=0.299 Sum_probs=61.7
Q ss_pred CcEEEccCCCCC-CCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC-CcC-CCCCCCccEEEccC
Q 010557 385 SAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT-IEG-LREMTRLRVLDLSY 458 (507)
Q Consensus 385 Lt~L~LS~N~Lt-~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~-Lp~-L~~L~sL~~LdLS~ 458 (507)
|++|++++|.+. .+| .|..+++|++|+|++|.+....+..+. .+|+.|+|++|.+++ +|. +..+++|+.|+|++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 455555555554 344 555555555555555555544333222 455555666555554 332 55556666666666
Q ss_pred CCCcc-cCC--CCCCCCCEEEcCCCCCC--CCCCCCCCCcCCeeeCCCcc
Q 010557 459 NRIFR-IGH--GNILSKPVFWLSFKLFE--FLTIIPNCKRLSCNLYNSKS 503 (507)
Q Consensus 459 N~Is~-IP~--~~f~sL~~L~LS~N~Ls--~L~~L~nL~~LscnlIs~n~ 503 (507)
|.++. +|. +.+.+|+.|+|+.|.+. .+..+.++.+|....++.|.
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 65553 332 23345556666666552 23445555555555554443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.86 E-value=2.3e-10 Score=125.28 Aligned_cols=186 Identities=24% Similarity=0.258 Sum_probs=129.9
Q ss_pred ceeEeecCCCCchhHHHHHHhcCCCCCCcccccccccccCCCCCCCCCchhhhhhhcccccccCCccccc-cchhhhccc
Q 010557 304 QWVAFPAESSSFKRVDEWVKDLGMETPFEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILH-ANSVIRSLN 382 (507)
Q Consensus 304 ~wv~~s~e~s~l~RV~~Wv~~L~~~~~lEd~~e~~~iv~pps~~~G~s~~~s~aqL~~~ldLsLn~~il~-~~s~l~~Lp 382 (507)
.=|.|+....+..+++.-|..+....=+..+ ....+..|. +.+++..+-.|+++.+.+. .-+.+..||
T Consensus 10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLn----------rt~L~~vPe-EL~~lqkLEHLs~~HN~L~~vhGELs~Lp 78 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLN----------RTKLEQVPE-ELSRLQKLEHLSMAHNQLISVHGELSDLP 78 (1255)
T ss_pred ecccccCCcCCCCcCchhHHHhhheeEEEec----------hhhhhhChH-HHHHHhhhhhhhhhhhhhHhhhhhhccch
Confidence 3466777777777777777776555322111 111112221 4445555556666665554 345566676
Q ss_pred cCCcEEEccCCCCC--CCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcC--CCCCCCccEEEc
Q 010557 383 SSSAVAHIAGIGLK--AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG--LREMTRLRVLDL 456 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt--~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdL 456 (507)
. |+.+.+..|+|+ .|| .|..|..|+.||||+|++..+|.+.-. +++..|+||+|+|.+||. |-+|+-|-.|+|
T Consensus 79 ~-LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 79 R-LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred h-hHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence 5 588888889887 677 888899999999999999998886554 788899999999999886 778888889999
Q ss_pred cCCCCcccCCC--CCCCCCEEEcCCCCCCC--CCCCCCCCcCCeeeCCC
Q 010557 457 SYNRIFRIGHG--NILSKPVFWLSFKLFEF--LTIIPNCKRLSCNLYNS 501 (507)
Q Consensus 457 S~N~Is~IP~~--~f~sL~~L~LS~N~Ls~--L~~L~nL~~LscnlIs~ 501 (507)
|+|++..+|+. -+..|+.|.|++|.+.. +..++.++.|....+++
T Consensus 158 S~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 158 SNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN 206 (1255)
T ss_pred ccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence 99999988874 45578888899998844 45555666665555443
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.82 E-value=7.8e-09 Score=117.75 Aligned_cols=119 Identities=19% Similarity=0.157 Sum_probs=84.5
Q ss_pred ccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEccCC
Q 010557 380 SLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYN 459 (507)
Q Consensus 380 ~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N 459 (507)
.+|..|+.|+|++|+|+.+|.+ ..+|+.|++++|.|+.++.. +.+|+.|+|++|.|+.+|.+ ...|+.|+|++|
T Consensus 339 ~lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N 412 (788)
T PRK15387 339 TLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL--PSELKELMVSGN 412 (788)
T ss_pred ccccccceEecCCCccCCCCCC--CcccceehhhccccccCccc--ccccceEEecCCcccCCCCc--ccCCCEEEccCC
Confidence 3555677888888888877743 24677777777777776643 24688888888888877653 256788888888
Q ss_pred CCcccCCCCCCCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCccCC
Q 010557 460 RIFRIGHGNILSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 460 ~Is~IP~~~f~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~~~ 505 (507)
+|+.||. .+..|+.|+|++|+|.. +..+.++..|....+++|+++
T Consensus 413 ~LssIP~-l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 413 RLTSLPM-LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred cCCCCCc-chhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence 8888775 34467778888888844 455677777777777777665
No 12
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=7.2e-10 Score=113.53 Aligned_cols=121 Identities=23% Similarity=0.327 Sum_probs=76.8
Q ss_pred cccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCC
Q 010557 364 EINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTI 442 (507)
Q Consensus 364 dLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~L 442 (507)
.+.|+.+.+..+..--.|-+.++.|++++|.|..+..+..|++|+.||||+|.++.+...-.. .++++|.|+.|.|..+
T Consensus 288 elDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L 367 (490)
T KOG1259|consen 288 ELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL 367 (490)
T ss_pred hccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh
Confidence 344555555544444444444677777777777666666777777777777777666553322 5677777777777777
Q ss_pred cCCCCCCCccEEEccCCCCcccCC----CCCCCCCEEEcCCCCCCC
Q 010557 443 EGLREMTRLRVLDLSYNRIFRIGH----GNILSKPVFWLSFKLFEF 484 (507)
Q Consensus 443 p~L~~L~sL~~LdLS~N~Is~IP~----~~f~sL~~L~LS~N~Ls~ 484 (507)
.+++.|.+|..||+++|+|..+.. +.++.|..+.|.+|.|..
T Consensus 368 SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 368 SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 777777777777777777765433 556666666666676644
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.78 E-value=1.8e-08 Score=114.83 Aligned_cols=100 Identities=20% Similarity=0.268 Sum_probs=49.9
Q ss_pred cccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCC------------------CCCCCcEEECCCCCCCCC
Q 010557 381 LNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGS------------------MPKGLHTLNLSRNKINTI 442 (507)
Q Consensus 381 Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~s------------------f~~sL~~LdLS~NkLs~L 442 (507)
++..|++|++++|+|+.+|.+ .++|+.|+|++|.|+.++... .+.+|+.|+|++|+|+.+
T Consensus 240 lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~L 317 (788)
T PRK15387 240 LPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASL 317 (788)
T ss_pred CCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhchhhcCEEECcCCccccccccccccceeECCCCccccC
Confidence 455667777777777766632 234455555555444443310 113455555555555554
Q ss_pred cCCCCCCCccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCC
Q 010557 443 EGLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFL 485 (507)
Q Consensus 443 p~L~~L~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L 485 (507)
|.+ ...|+.|++++|.|+.||. ...+|+.|+|++|+|..+
T Consensus 318 p~l--p~~L~~L~Ls~N~L~~LP~-lp~~Lq~LdLS~N~Ls~L 357 (788)
T PRK15387 318 PAL--PSELCKLWAYNNQLTSLPT-LPSGLQELSVSDNQLASL 357 (788)
T ss_pred CCC--cccccccccccCccccccc-cccccceEecCCCccCCC
Confidence 431 1123344444444444442 123566677777766443
No 14
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=9.3e-10 Score=112.75 Aligned_cols=122 Identities=20% Similarity=0.174 Sum_probs=105.1
Q ss_pred CcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCC-CCCCCccEEEccCCCCc
Q 010557 385 SAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGL-REMTRLRVLDLSYNRIF 462 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L-~~L~sL~~LdLS~N~Is 462 (507)
|+.|+|++|.|+.+. +..-++.++.|++|+|.|..+....+..+|+.||||+|.++.+.++ ..|.+.++|+|+.|.|.
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE 365 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh
Confidence 688999999999998 8888899999999999999999877778999999999999998873 45778999999999999
Q ss_pred ccCC-CCCCCCCEEEcCCCCCCC---CCCCCCCCcCCeeeCCCccCCC
Q 010557 463 RIGH-GNILSKPVFWLSFKLFEF---LTIIPNCKRLSCNLYNSKSHSA 506 (507)
Q Consensus 463 ~IP~-~~f~sL~~L~LS~N~Ls~---L~~L~nL~~LscnlIs~n~~~~ 506 (507)
.+.. +.+-+|..|+++.|+|+. +..+|+|+.|....+-+|++..
T Consensus 366 ~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 366 TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 8765 566799999999999955 5677777777777777777653
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.73 E-value=2.3e-08 Score=113.73 Aligned_cols=118 Identities=17% Similarity=0.163 Sum_probs=64.6
Q ss_pred ccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcC-CC-------------
Q 010557 382 NSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG-LR------------- 446 (507)
Q Consensus 382 p~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~-L~------------- 446 (507)
+..|+.|+|++|.|..+| .+. .+|+.|+|++|.|+.+|...+ .+|+.|+|++|+|+.+|. +.
T Consensus 240 ~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~-~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~L 316 (754)
T PRK15370 240 PDTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP-EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSL 316 (754)
T ss_pred hccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC-CCCcEEECCCCccccCcccchhhHHHHHhcCCcc
Confidence 344555666666655555 332 356666666666665544322 356666666666555432 11
Q ss_pred ------CCCCccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCCC-CCCCCCcCCeeeCCCccC
Q 010557 447 ------EMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLT-IIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 447 ------~L~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L~-~L~nL~~LscnlIs~n~~ 504 (507)
..++|+.|++++|.|+.||.....+|+.|+|++|+|..++ .+ ...|....+++|.+
T Consensus 317 t~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~L 379 (754)
T PRK15370 317 TALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETL--PPTITTLDVSRNAL 379 (754)
T ss_pred ccCCccccccceeccccCCccccCChhhcCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcC
Confidence 1245666666666666666555557777777777775432 22 23455555555544
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.72 E-value=9.1e-10 Score=116.03 Aligned_cols=119 Identities=23% Similarity=0.264 Sum_probs=88.0
Q ss_pred cEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcC-CCCCCCccEEEccCCCCc
Q 010557 386 AVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIF 462 (507)
Q Consensus 386 t~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~N~Is 462 (507)
+.+.+++|.+.-+| .+..+++|+.|+|++|.+..+|-..+. ..|+.||||+|++..+|. +..+..|+++..+.|+|.
T Consensus 415 T~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 415 TDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred HHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccccc
Confidence 34556666666666 677888888888888888888876665 568888888888888776 556666777777778888
Q ss_pred ccCCC---CCCCCCEEEcCCCCC-CCCCCCCCCCcCCeeeCCCccC
Q 010557 463 RIGHG---NILSKPVFWLSFKLF-EFLTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 463 ~IP~~---~f~sL~~L~LS~N~L-s~L~~L~nL~~LscnlIs~n~~ 504 (507)
.++.. .+.+|+.|+|.+|.| ..|+.++++++|+...+.+|++
T Consensus 495 ~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 495 SVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 77764 344677788888887 5677888888888888877765
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.69 E-value=4.1e-08 Score=111.75 Aligned_cols=96 Identities=23% Similarity=0.259 Sum_probs=51.0
Q ss_pred CCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcC-CCCCCCccEEEccCCCC
Q 010557 384 SSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRI 461 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~N~I 461 (507)
+|+.|++++|.|+.+| .+. .+|+.|+|++|.|..||... +.+|+.|+|++|+|+.+|. +. .+|+.|+|++|+|
T Consensus 221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l-~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERL-PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSI 295 (754)
T ss_pred CCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhH-hCCCCEEECcCCccCccccccC--CCCcEEECCCCcc
Confidence 4555555555555555 332 24555555555555554432 2355666666666655543 21 3566666666666
Q ss_pred cccCCCCCCCCCEEEcCCCCCCC
Q 010557 462 FRIGHGNILSKPVFWLSFKLFEF 484 (507)
Q Consensus 462 s~IP~~~f~sL~~L~LS~N~Ls~ 484 (507)
+.+|.....+|..|+|++|.|..
T Consensus 296 t~LP~~lp~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 296 RTLPAHLPSGITHLNVQSNSLTA 318 (754)
T ss_pred ccCcccchhhHHHHHhcCCcccc
Confidence 66554444455556666666543
No 18
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.61 E-value=6.8e-09 Score=109.56 Aligned_cols=116 Identities=29% Similarity=0.342 Sum_probs=98.6
Q ss_pred hhccccCCcEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEc
Q 010557 378 IRSLNSSSAVAHIAGIGLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDL 456 (507)
Q Consensus 378 l~~Lp~sLt~L~LS~N~Lt~LP~-L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdL 456 (507)
+..+ ..+..|++..|.|..+.. +..+.+|++|+|++|.|+.+.+......|+.|++++|.|+.+.++..++.|+.++|
T Consensus 91 l~~~-~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 91 LSKL-KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDL 169 (414)
T ss_pred cccc-cceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccC
Confidence 4443 347899999999999986 99999999999999999999987777779999999999999999999999999999
Q ss_pred cCCCCcccCC---CCCCCCCEEEcCCCCCCCCCCCCCCCcC
Q 010557 457 SYNRIFRIGH---GNILSKPVFWLSFKLFEFLTIIPNCKRL 494 (507)
Q Consensus 457 S~N~Is~IP~---~~f~sL~~L~LS~N~Ls~L~~L~nL~~L 494 (507)
++|+|..+.. ..+..|..+++..|.+..+..+..+..+
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l 210 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKL 210 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHH
Confidence 9999999988 7777888889998888665554444443
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.54 E-value=1e-08 Score=116.44 Aligned_cols=119 Identities=24% Similarity=0.221 Sum_probs=83.1
Q ss_pred CCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcCCCCCCCccEEEccCCC
Q 010557 384 SSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNR 460 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N~ 460 (507)
.|++|+|++|.|..+| .+.+|..|+.|+||||.++.|+..... ..|++|..-.|+|..+|.+..++.|+++||+.|+
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccch
Confidence 4677777777777777 677777777777777777777754333 5677777777777777778888888888888888
Q ss_pred Ccc--cCCCCC-CCCCEEEcCCCCC--CCCCCCCCCCcCCeeeCCCc
Q 010557 461 IFR--IGHGNI-LSKPVFWLSFKLF--EFLTIIPNCKRLSCNLYNSK 502 (507)
Q Consensus 461 Is~--IP~~~f-~sL~~L~LS~N~L--s~L~~L~nL~~LscnlIs~n 502 (507)
|+. ++...- +.|++|+|++|.- ..-.-+..|..++|..+.-+
T Consensus 464 L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 464 LSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 874 333332 6888888888863 22344556666666555544
No 20
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.52 E-value=1.4e-08 Score=107.25 Aligned_cols=124 Identities=24% Similarity=0.295 Sum_probs=101.3
Q ss_pred ccCCccccccch-hhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCC
Q 010557 365 INLSEEILHANS-VIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINT 441 (507)
Q Consensus 365 LsLn~~il~~~s-~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~ 441 (507)
+-++.+.+...+ .+..++ .|+.|++++|-+..+| .++.+..|+.|+|+.|++..+|..... ..|+.+-.++|+|..
T Consensus 417 l~lsnn~isfv~~~l~~l~-kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~ 495 (565)
T KOG0472|consen 417 LVLSNNKISFVPLELSQLQ-KLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGS 495 (565)
T ss_pred HHhhcCccccchHHHHhhh-cceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccc
Confidence 334444555333 344454 4799999999999999 999999999999999999999886544 557777778899999
Q ss_pred Cc--CCCCCCCccEEEccCCCCcccCC--CCCCCCCEEEcCCCCCCCCCCCC
Q 010557 442 IE--GLREMTRLRVLDLSYNRIFRIGH--GNILSKPVFWLSFKLFEFLTIIP 489 (507)
Q Consensus 442 Lp--~L~~L~sL~~LdLS~N~Is~IP~--~~f~sL~~L~LS~N~Ls~L~~L~ 489 (507)
++ ++..|.+|++|||..|.|..||+ +.+.+|++|.|.+|.|..|+..+
T Consensus 496 vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~Pr~~i 547 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQPRHQI 547 (565)
T ss_pred cChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCCHHHH
Confidence 85 39999999999999999999998 67889999999999998776544
No 21
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.46 E-value=1.3e-07 Score=73.75 Aligned_cols=56 Identities=41% Similarity=0.630 Sum_probs=32.3
Q ss_pred CCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCC
Q 010557 406 SLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRI 461 (507)
Q Consensus 406 sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~I 461 (507)
+|+.|+|++|.|+.|++..|. ++|+.|+|++|.|+.++. |..+++|+.|+|++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455556666666655555554 555556666555555532 55666666666666654
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.41 E-value=1.6e-08 Score=106.60 Aligned_cols=109 Identities=22% Similarity=0.258 Sum_probs=89.6
Q ss_pred hhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEE-ECCCCCCCCCcC--CCCC
Q 010557 376 SVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTL-NLSRNKINTIEG--LREM 448 (507)
Q Consensus 376 s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~L-dLS~NkLs~Lp~--L~~L 448 (507)
.+...||...+.+.|..|+|+.|| .|..|.+|+.||||+|.|+.|.+.+|. ..|..| ++++|+|+.+|. |..|
T Consensus 60 eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 60 EVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 445668888899999999999999 899999999999999999999999986 555555 556699999974 8999
Q ss_pred CCccEEEccCCCCcccCCCCCC---CCCEEEcCCCCCCC
Q 010557 449 TRLRVLDLSYNRIFRIGHGNIL---SKPVFWLSFKLFEF 484 (507)
Q Consensus 449 ~sL~~LdLS~N~Is~IP~~~f~---sL~~L~LS~N~Ls~ 484 (507)
.+|+.|.+.-|+|..++.+.|. +|..|.|-.|.+..
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~ 178 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS 178 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhh
Confidence 9999999999999888876555 44555666776643
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.38 E-value=3e-08 Score=112.71 Aligned_cols=120 Identities=22% Similarity=0.288 Sum_probs=98.2
Q ss_pred CCcEEEccCCCCC--CCCCCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC-CCCCCCccEEEccC
Q 010557 384 SSAVAHIAGIGLK--AIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSY 458 (507)
Q Consensus 384 sLt~L~LS~N~Lt--~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~ 458 (507)
.|+.|++.+|.|+ .+|.|.++.+|++|+|++|+|..+|...+. ..|+.|+||+|+|+.||. +..+..|++|...+
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC
Confidence 3678899999998 567899999999999999999999987775 678899999999999986 88889999999999
Q ss_pred CCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCC--CcCCeeeCCCcc
Q 010557 459 NRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNC--KRLSCNLYNSKS 503 (507)
Q Consensus 459 N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL--~~LscnlIs~n~ 503 (507)
|+|..+|. ..++.|+.++|+.|+|..+.....+ ++|....+++|+
T Consensus 440 N~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 440 NQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred CceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 99999995 3566889999999999553222222 567777777665
No 24
>PLN03150 hypothetical protein; Provisional
Probab=98.37 E-value=8.9e-07 Score=98.88 Aligned_cols=98 Identities=32% Similarity=0.386 Sum_probs=81.1
Q ss_pred CcEEEccCCCCC-CCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC-CcC-CCCCCCccEEEccC
Q 010557 385 SAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT-IEG-LREMTRLRVLDLSY 458 (507)
Q Consensus 385 Lt~L~LS~N~Lt-~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~-Lp~-L~~L~sL~~LdLS~ 458 (507)
++.|+|++|.|+ .+| .|..|++|+.|+|++|.|.+..+..+. .+|+.|+|++|.|++ +|. +..|++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 678999999998 677 899999999999999999976554443 789999999999997 665 89999999999999
Q ss_pred CCCc-ccCCC---CCCCCCEEEcCCCCC
Q 010557 459 NRIF-RIGHG---NILSKPVFWLSFKLF 482 (507)
Q Consensus 459 N~Is-~IP~~---~f~sL~~L~LS~N~L 482 (507)
|.++ .+|.. .+..+..+++..|..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 9998 56653 223556788888864
No 25
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=2.3e-07 Score=72.38 Aligned_cols=56 Identities=29% Similarity=0.495 Sum_probs=52.2
Q ss_pred CCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCC
Q 010557 384 SSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKI 439 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkL 439 (507)
.|++|++++|+|+.+| .|..+++|++|+|++|.|+.+++..|. .+|+.|+|++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999998 789999999999999999999998887 8999999999986
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.32 E-value=2.7e-07 Score=95.63 Aligned_cols=120 Identities=23% Similarity=0.292 Sum_probs=59.1
Q ss_pred CcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCC-CCCCCcEEECCCCCC-CCCcCCCCCCCccEEEccCCCC
Q 010557 385 SAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGS-MPKGLHTLNLSRNKI-NTIEGLREMTRLRVLDLSYNRI 461 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~s-f~~sL~~LdLS~NkL-s~Lp~L~~L~sL~~LdLS~N~I 461 (507)
|+.|++++|.++.+| ....+++|+.|++++|.|..++... ....|..|.+++|.+ ..+..+..+.+|..|.+..|++
T Consensus 165 L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 165 LKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred ccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee
Confidence 344444444444444 2224444444444444444444431 222344444444422 2222244444444444555554
Q ss_pred cccCC--CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccC
Q 010557 462 FRIGH--GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 462 s~IP~--~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~ 504 (507)
..++. ..+.+|+.|+++.|+++.+..++.+.+|++..++.+..
T Consensus 245 ~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 245 EDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred eeccchhccccccceeccccccccccccccccCccCEEeccCccc
Confidence 44221 33445677778888887766677777777777776644
No 27
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.30 E-value=1.6e-07 Score=99.24 Aligned_cols=121 Identities=26% Similarity=0.213 Sum_probs=104.4
Q ss_pred CcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCC-CCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEccCCCCc
Q 010557 385 SAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPT-GSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIF 462 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp-~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N~Is 462 (507)
+..+.+..|.|..+- .+..+.+|+.|++.+|.|..|.. .....+|+.|+|++|+|+.+.++..|+.|..|++++|.|+
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcch
Confidence 345568888888754 68999999999999999999988 5545799999999999999999999999999999999999
Q ss_pred ccCCC-CCCCCCEEEcCCCCCCCCCC--CCCCCcCCeeeCCCccCC
Q 010557 463 RIGHG-NILSKPVFWLSFKLFEFLTI--IPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 463 ~IP~~-~f~sL~~L~LS~N~Ls~L~~--L~nL~~LscnlIs~n~~~ 505 (507)
.+..- .+..|+.+++++|.+..+.. +..+..|...+++.|.+.
T Consensus 154 ~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 154 DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 99873 47799999999999988777 588888888888877653
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.24 E-value=1.1e-07 Score=103.81 Aligned_cols=117 Identities=17% Similarity=0.194 Sum_probs=52.0
Q ss_pred cEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcC-CCCCCCccEEEccCCCCc
Q 010557 386 AVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIF 462 (507)
Q Consensus 386 t~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~N~Is 462 (507)
++|+|+.|+++.+| .++. --|+.|-+++|.++.+|...-. .+|..||.+.|.|..+|. ++.|.+|+.|++..|++.
T Consensus 124 t~l~ls~NqlS~lp~~lC~-lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 124 TFLDLSSNQLSHLPDGLCD-LPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE 202 (722)
T ss_pred HHhhhccchhhcCChhhhc-CcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh
Confidence 44444444444444 2222 2244444444444444442222 344444444444444432 444444444444444444
Q ss_pred ccCCCCCC-CCCEEEcCCCCC-CCCCCCCCCCcCCeeeCCCcc
Q 010557 463 RIGHGNIL-SKPVFWLSFKLF-EFLTIIPNCKRLSCNLYNSKS 503 (507)
Q Consensus 463 ~IP~~~f~-sL~~L~LS~N~L-s~L~~L~nL~~LscnlIs~n~ 503 (507)
.+|.+... .|..|+++.|.| .++-.+.+++.|...++.+|+
T Consensus 203 ~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 203 DLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred hCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 44443222 334455555555 233444555555555555544
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.24 E-value=2.1e-07 Score=101.79 Aligned_cols=124 Identities=20% Similarity=0.233 Sum_probs=90.1
Q ss_pred hhcccccccCCccccccchhhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECC
Q 010557 358 HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLS 435 (507)
Q Consensus 358 qL~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS 435 (507)
+.++++|++.|... ..+..++.|| |+.|.+++|+++.+| .++.+..|..||.+.|.|..+++.... .+|+.|++.
T Consensus 121 ~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 121 EALTFLDLSSNQLS-HLPDGLCDLP--LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred hHHHHhhhccchhh-cCChhhhcCc--ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHh
Confidence 33466676665532 2455667776 789999999999999 899999999999999999998885443 567777777
Q ss_pred CCCCCCCcC-CCCCCCccEEEccCCCCcccCCC--CCCCCCEEEcCCCCCCCC
Q 010557 436 RNKINTIEG-LREMTRLRVLDLSYNRIFRIGHG--NILSKPVFWLSFKLFEFL 485 (507)
Q Consensus 436 ~NkLs~Lp~-L~~L~sL~~LdLS~N~Is~IP~~--~f~sL~~L~LS~N~Ls~L 485 (507)
.|++..+|. +..| .|..||++.|+|+.||.. .+..|+.|.|.+|.+..+
T Consensus 198 Rn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 198 RNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCC
Confidence 777777654 5544 477777777777777763 344666777777777554
No 30
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.23 E-value=2.4e-08 Score=111.35 Aligned_cols=105 Identities=26% Similarity=0.387 Sum_probs=89.5
Q ss_pred hhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcCCCCCCCccEEE
Q 010557 377 VIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEGLREMTRLRVLD 455 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~L~~L~sL~~Ld 455 (507)
.++-+| .++.|+|++|+++.+..+..|+.|+.|||++|.+..++..... .+|+.|+|++|.++.+-++.+|.+|+.||
T Consensus 182 SLqll~-ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LD 260 (1096)
T KOG1859|consen 182 SLQLLP-ALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLD 260 (1096)
T ss_pred HHHHHH-HhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccc
Confidence 344344 4689999999999888999999999999999999999885544 67999999999999999999999999999
Q ss_pred ccCCCCcccCC----CCCCCCCEEEcCCCCC
Q 010557 456 LSYNRIFRIGH----GNILSKPVFWLSFKLF 482 (507)
Q Consensus 456 LS~N~Is~IP~----~~f~sL~~L~LS~N~L 482 (507)
|++|-|..... +.+..|+.|||.+|.+
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 99999986543 4455778899999988
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.23 E-value=8e-07 Score=92.12 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=58.8
Q ss_pred CCccccccchhhhcccc-CCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCC-CCCCCcEEECCCCCCCCCc
Q 010557 367 LSEEILHANSVIRSLNS-SSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGS-MPKGLHTLNLSRNKINTIE 443 (507)
Q Consensus 367 Ln~~il~~~s~l~~Lp~-sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~s-f~~sL~~LdLS~NkLs~Lp 443 (507)
+..+.+..+.....+.. .|+.|++++|.+..+| .+..+++|+.|++++|.|..++... ....|..|++++|+|+.+|
T Consensus 123 l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~ 202 (394)
T COG4886 123 LDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP 202 (394)
T ss_pred cCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCc
Confidence 33333333333333332 4555666666666554 5555666666666666666655543 2245556666666666655
Q ss_pred CC-CCCCCccEEEccCCCCcccCC--CCCCCCCEEEcCCCCC
Q 010557 444 GL-REMTRLRVLDLSYNRIFRIGH--GNILSKPVFWLSFKLF 482 (507)
Q Consensus 444 ~L-~~L~sL~~LdLS~N~Is~IP~--~~f~sL~~L~LS~N~L 482 (507)
.. ..+..|..|.+++|++..++. ..+..+..+.+..|++
T Consensus 203 ~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 203 PEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred hhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee
Confidence 43 333445666666663332222 3334444455555555
No 32
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.09 E-value=2.4e-05 Score=93.15 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=71.9
Q ss_pred chhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCC-CCCCcCCCCCCCcc
Q 010557 375 NSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNK-INTIEGLREMTRLR 452 (507)
Q Consensus 375 ~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~Nk-Ls~Lp~L~~L~sL~ 452 (507)
+..+..+|..|+.|++.+|.++.+|....+.+|+.|+|++|.|..++.+... .+|+.|+|++|. +..+|.+..+++|+
T Consensus 581 p~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le 660 (1153)
T PLN03210 581 PEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLE 660 (1153)
T ss_pred CcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCccc
Confidence 3445667777888888888888888333567888888888887777665433 677888887653 56667777777777
Q ss_pred EEEccCCC-CcccCC--CCCCCCCEEEcCCC
Q 010557 453 VLDLSYNR-IFRIGH--GNILSKPVFWLSFK 480 (507)
Q Consensus 453 ~LdLS~N~-Is~IP~--~~f~sL~~L~LS~N 480 (507)
.|+|++|. +..+|. +.+.+|+.|+++++
T Consensus 661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred EEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 77777653 455554 34456666777663
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.5e-06 Score=92.88 Aligned_cols=117 Identities=24% Similarity=0.251 Sum_probs=83.4
Q ss_pred cCCcEEEccCCCCC--CCC-CCCCCCCCCEEEccCCCCCCcCCCCC--CCCCcEEECCCCCCCCCc---CCCCCCCccEE
Q 010557 383 SSSAVAHIAGIGLK--AIP-TISHFSSLRSVNLSNNFIVHIPTGSM--PKGLHTLNLSRNKINTIE---GLREMTRLRVL 454 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt--~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf--~~sL~~LdLS~NkLs~Lp---~L~~L~sL~~L 454 (507)
..++.|.|+.|+|+ .+- .+..+++|..|+|..|.+-.+..... +..|+.|||++|++-..+ ..+.|+.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 34566777777776 333 56677888888998886332222211 278999999999988765 37889999999
Q ss_pred EccCCCCcccC--C-------CCCCCCCEEEcCCCCCCC------CCCCCCCCcCC--eeeC
Q 010557 455 DLSYNRIFRIG--H-------GNILSKPVFWLSFKLFEF------LTIIPNCKRLS--CNLY 499 (507)
Q Consensus 455 dLS~N~Is~IP--~-------~~f~sL~~L~LS~N~Ls~------L~~L~nL~~Ls--cnlI 499 (507)
+++.+.|..|. . ..|+.|+.|++..|+|.. +..++++.+|. |+++
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 99999998653 3 468899999999999933 34455566655 3544
No 34
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.97 E-value=1.1e-05 Score=79.26 Aligned_cols=112 Identities=19% Similarity=0.188 Sum_probs=87.9
Q ss_pred CCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCC--
Q 010557 367 LSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTI-- 442 (507)
Q Consensus 367 Ln~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~L-- 442 (507)
+.+.-+..+..++.+-.....++|+.|.|..++.|..++.|..|.|.+|.|+.|.+.... .+|..|.|.+|.|..+
T Consensus 26 LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d 105 (233)
T KOG1644|consen 26 LRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGD 105 (233)
T ss_pred cccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhh
Confidence 333333334444444445678999999999999999999999999999999999995433 7899999999999886
Q ss_pred -cCCCCCCCccEEEccCCCCcccCC------CCCCCCCEEEcC
Q 010557 443 -EGLREMTRLRVLDLSYNRIFRIGH------GNILSKPVFWLS 478 (507)
Q Consensus 443 -p~L~~L~sL~~LdLS~N~Is~IP~------~~f~sL~~L~LS 478 (507)
..+..|++|+.|.+-+|.++.... -.+++|+.|+++
T Consensus 106 l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 106 LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 458889999999999999987655 356677777654
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.96 E-value=4.9e-06 Score=82.49 Aligned_cols=122 Identities=19% Similarity=0.190 Sum_probs=69.2
Q ss_pred cCCcEEEccCCCCC-----CCC-CCCCCCCCCEEEccCCCCCCcCC----CCCC--CCCcEEECCCCCCCCC-----c-C
Q 010557 383 SSSAVAHIAGIGLK-----AIP-TISHFSSLRSVNLSNNFIVHIPT----GSMP--KGLHTLNLSRNKINTI-----E-G 444 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt-----~LP-~L~~L~sL~~LdLS~N~Is~Ipp----~sf~--~sL~~LdLS~NkLs~L-----p-~ 444 (507)
..|+.|++++|.++ .+. .+..+++|+.|+|++|.+..... ..+. .+|+.|+|++|.|+.. . .
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 45677777777776 222 45556677777777777663110 0011 4677777777776642 1 2
Q ss_pred CCCCCCccEEEccCCCCcccCC-----C---CCCCCCEEEcCCCCCC------CCCCCCCCCcCCeeeCCCccC
Q 010557 445 LREMTRLRVLDLSYNRIFRIGH-----G---NILSKPVFWLSFKLFE------FLTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 445 L~~L~sL~~LdLS~N~Is~IP~-----~---~f~sL~~L~LS~N~Ls------~L~~L~nL~~LscnlIs~n~~ 504 (507)
+..+++|+.|++++|.++.... . ....|+.|++++|.|. ....+..+.+|....+++|.+
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 5556677777777777663111 1 1246677777777663 123344445566655555544
No 36
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.91 E-value=3.7e-07 Score=102.06 Aligned_cols=119 Identities=21% Similarity=0.186 Sum_probs=75.1
Q ss_pred CcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCC--CCCCccEEEccCCCC
Q 010557 385 SAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLR--EMTRLRVLDLSYNRI 461 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~--~L~sL~~LdLS~N~I 461 (507)
|...++++|.|..+. .+.-++.|+.|||++|.++.+....-..+|++|||+.|.|..+|.++ .+ .|..|+|++|-+
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNAL 244 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccHH
Confidence 345567777777666 66667777777777777777663322367777777777777776533 23 377777777777
Q ss_pred cccCC-CCCCCCCEEEcCCCCCCCCCCCCCCC---cCCeeeCCCccC
Q 010557 462 FRIGH-GNILSKPVFWLSFKLFEFLTIIPNCK---RLSCNLYNSKSH 504 (507)
Q Consensus 462 s~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~---~LscnlIs~n~~ 504 (507)
+.+.. ..+.+|..|+|++|.|+...++.-|+ .|.-.++.+|++
T Consensus 245 ~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 245 TTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 76543 56667777777777775544443333 344455555543
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.87 E-value=3.3e-06 Score=89.50 Aligned_cols=89 Identities=29% Similarity=0.415 Sum_probs=75.5
Q ss_pred CCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCCcccCCC
Q 010557 394 GLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIFRIGHG 467 (507)
Q Consensus 394 ~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~~ 467 (507)
-....| +|..|++|+.|+|++|.|+.|.++.|- ..|+.|.|..|+|..+.. |.++..|++|+|.+|+|+.+-.+
T Consensus 261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence 334556 899999999999999999999999887 789999999999999864 89999999999999999998888
Q ss_pred CCC---CCCEEEcCCCCC
Q 010557 468 NIL---SKPVFWLSFKLF 482 (507)
Q Consensus 468 ~f~---sL~~L~LS~N~L 482 (507)
.|. .|..|+|-.|.+
T Consensus 341 aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cccccceeeeeehccCcc
Confidence 777 555667666655
No 38
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.77 E-value=0.00015 Score=86.37 Aligned_cols=98 Identities=23% Similarity=0.284 Sum_probs=61.7
Q ss_pred cCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCC-CCCCcCCCCCCCCCcEEECCCCC-CCCCcC-CCCCCCccEEEccC
Q 010557 383 SSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNN-FIVHIPTGSMPKGLHTLNLSRNK-INTIEG-LREMTRLRVLDLSY 458 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N-~Is~Ipp~sf~~sL~~LdLS~Nk-Ls~Lp~-L~~L~sL~~LdLS~ 458 (507)
..|+.|++.+|.|..++ .+..+++|+.|+|+++ .+..++.....++|+.|+|++|. +..+|. +..|++|+.|+|++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 45677778777777776 6777777777777764 35566554434677777777754 445554 66677777777766
Q ss_pred C-CCcccCCC-CCCCCCEEEcCCC
Q 010557 459 N-RIFRIGHG-NILSKPVFWLSFK 480 (507)
Q Consensus 459 N-~Is~IP~~-~f~sL~~L~LS~N 480 (507)
| .+..+|.. .+.+|+.|+|+++
T Consensus 691 c~~L~~Lp~~i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 691 CENLEILPTGINLKSLYRLNLSGC 714 (1153)
T ss_pred CCCcCccCCcCCCCCCCEEeCCCC
Confidence 4 45556553 2334555554443
No 39
>PLN03150 hypothetical protein; Provisional
Probab=97.72 E-value=6.5e-05 Score=84.16 Aligned_cols=86 Identities=21% Similarity=0.293 Sum_probs=69.6
Q ss_pred chhhhccccCCcEEEccCCCCC-CCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC-CcC-CCC-
Q 010557 375 NSVIRSLNSSSAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT-IEG-LRE- 447 (507)
Q Consensus 375 ~s~l~~Lp~sLt~L~LS~N~Lt-~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~-Lp~-L~~- 447 (507)
...+..++ .|+.|+|++|.|+ .+| .+..+++|+.|+|++|.|++..+..+. .+|+.|+|++|.|++ +|. +..
T Consensus 435 p~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 435 PNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence 34455564 4799999999998 788 899999999999999999986665443 789999999999997 564 544
Q ss_pred CCCccEEEccCCCC
Q 010557 448 MTRLRVLDLSYNRI 461 (507)
Q Consensus 448 L~sL~~LdLS~N~I 461 (507)
+..+..+++.+|..
T Consensus 514 ~~~~~~l~~~~N~~ 527 (623)
T PLN03150 514 LLHRASFNFTDNAG 527 (623)
T ss_pred cccCceEEecCCcc
Confidence 34678899999864
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=2.7e-05 Score=58.26 Aligned_cols=40 Identities=38% Similarity=0.513 Sum_probs=32.1
Q ss_pred CCCcEEECCCCCCCCCcC-CCCCCCccEEEccCCCCcccCC
Q 010557 427 KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIFRIGH 466 (507)
Q Consensus 427 ~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~N~Is~IP~ 466 (507)
++|+.|+|++|+|+.++. +..|++|+.|+|++|+|+.++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 368888999999988887 8889999999999999887753
No 41
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.57 E-value=0.0001 Score=72.61 Aligned_cols=99 Identities=21% Similarity=0.304 Sum_probs=64.0
Q ss_pred cEEEccCCCCCCCCCCC-CCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCc-CCCC-CCCccEEEccCCCCc
Q 010557 386 AVAHIAGIGLKAIPTIS-HFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE-GLRE-MTRLRVLDLSYNRIF 462 (507)
Q Consensus 386 t~L~LS~N~Lt~LP~L~-~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp-~L~~-L~sL~~LdLS~N~Is 462 (507)
+.+++.+.++..+..++ .+.+...+||++|.|..+........|++|.|.+|+|+.|. .+.. +++|..|.|.+|+|.
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 45677777666554322 23456677778887777765544467778888888887774 3433 456777778887777
Q ss_pred ccCC----CCCCCCCEEEcCCCCCCC
Q 010557 463 RIGH----GNILSKPVFWLSFKLFEF 484 (507)
Q Consensus 463 ~IP~----~~f~sL~~L~LS~N~Ls~ 484 (507)
.+.. ..++.|+.|.+-+|+++.
T Consensus 102 ~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 102 ELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred hhhhcchhccCCccceeeecCCchhc
Confidence 6543 455677777777777633
No 42
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.55 E-value=2.8e-05 Score=77.14 Aligned_cols=123 Identities=25% Similarity=0.332 Sum_probs=82.4
Q ss_pred ccccccCCccccc--cchhhhcccc--CCcEEEccCCCCCC-----CC-CCCCC-CCCCEEEccCCCCCCcCC----CCC
Q 010557 361 RRSEINLSEEILH--ANSVIRSLNS--SSAVAHIAGIGLKA-----IP-TISHF-SSLRSVNLSNNFIVHIPT----GSM 425 (507)
Q Consensus 361 ~~ldLsLn~~il~--~~s~l~~Lp~--sLt~L~LS~N~Lt~-----LP-~L~~L-~sL~~LdLS~N~Is~Ipp----~sf 425 (507)
.+..+.++++.+. ....+..+.. .|+.|++++|.+.. +. .+..+ ++|+.|+|++|.|+.-.. ..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 3334455444443 2233333333 48999999999872 22 45666 899999999999884211 112
Q ss_pred C--CCCcEEECCCCCCCC-----Cc-CCCCCCCccEEEccCCCCcccCC-------CCCCCCCEEEcCCCCCC
Q 010557 426 P--KGLHTLNLSRNKINT-----IE-GLREMTRLRVLDLSYNRIFRIGH-------GNILSKPVFWLSFKLFE 483 (507)
Q Consensus 426 ~--~sL~~LdLS~NkLs~-----Lp-~L~~L~sL~~LdLS~N~Is~IP~-------~~f~sL~~L~LS~N~Ls 483 (507)
. .+|+.|+|++|.+++ +. .+..+++|+.|+|++|.|+.... ..++.|+.|++++|.+.
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 1 579999999999884 21 25566799999999999874332 34568999999999884
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.45 E-value=8.1e-05 Score=55.65 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=28.9
Q ss_pred CCcEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCCCcCC
Q 010557 384 SSAVAHIAGIGLKAIPT-ISHFSSLRSVNLSNNFIVHIPT 422 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP~-L~~L~sL~~LdLS~N~Is~Ipp 422 (507)
.|++|++++|+|+.+|. |..|++|+.|+|++|.|+.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46788888888888874 8888888888888888877654
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.33 E-value=9.2e-06 Score=75.99 Aligned_cols=85 Identities=25% Similarity=0.342 Sum_probs=64.4
Q ss_pred CcEEEccCCCCCCCC-CC-CCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcC-CCCCCCccEEEccCCC
Q 010557 385 SAVAHIAGIGLKAIP-TI-SHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNR 460 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP-~L-~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~N~ 460 (507)
|+..+|++|.++.+| .| ..++.++.|+|++|.|+.+|..... +.|+.|+++.|.|...|. +..|.+|..|+...|.
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 566788888888887 44 4456888888888888888876332 678888888888887664 5558888888888888
Q ss_pred CcccCCCCC
Q 010557 461 IFRIGHGNI 469 (507)
Q Consensus 461 Is~IP~~~f 469 (507)
+..||-..|
T Consensus 135 ~~eid~dl~ 143 (177)
T KOG4579|consen 135 RAEIDVDLF 143 (177)
T ss_pred cccCcHHHh
Confidence 888876543
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00012 Score=78.64 Aligned_cols=145 Identities=19% Similarity=0.190 Sum_probs=99.8
Q ss_pred hhcccccccCCccccccc----hhhhccccCCcEEEccCCCCCCCC---CCCCCCCCCEEEccCCCCCC--cCC--CCCC
Q 010557 358 HLTRRSEINLSEEILHAN----SVIRSLNSSSAVAHIAGIGLKAIP---TISHFSSLRSVNLSNNFIVH--IPT--GSMP 426 (507)
Q Consensus 358 qL~~~ldLsLn~~il~~~----s~l~~Lp~sLt~L~LS~N~Lt~LP---~L~~L~sL~~LdLS~N~Is~--Ipp--~sf~ 426 (507)
++..+.+|+|+.+++... .....|| .|+.|+|+.|.+...- .-..+++|+.|.|+.+.|+- +.. ..|
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp-~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f- 221 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLP-SLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF- 221 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcc-cchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC-
Confidence 445667788888777633 3334455 4789999999887432 23467889999999888873 111 222
Q ss_pred CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCCcccCC----CCCCCCCEEEcCCCCCCCCCC--------CCCCC
Q 010557 427 KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIFRIGH----GNILSKPVFWLSFKLFEFLTI--------IPNCK 492 (507)
Q Consensus 427 ~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~----~~f~sL~~L~LS~N~Ls~L~~--------L~nL~ 492 (507)
++|..|+|..|..-.+.. ..-+..|+.|+|++|++-.++. +.|+.|+.|+++.+.|..+.. .....
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 689999999996444432 5557889999999999988775 678899999999998844321 23445
Q ss_pred cCCeeeCCCccC
Q 010557 493 RLSCNLYNSKSH 504 (507)
Q Consensus 493 ~LscnlIs~n~~ 504 (507)
.|....+..|.+
T Consensus 302 kL~~L~i~~N~I 313 (505)
T KOG3207|consen 302 KLEYLNISENNI 313 (505)
T ss_pred cceeeecccCcc
Confidence 566666665554
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.84 E-value=0.0028 Score=68.39 Aligned_cols=33 Identities=15% Similarity=-0.004 Sum_probs=24.4
Q ss_pred CCccEEEccCCCCcccCCCCCCCCCEEEcCCCC
Q 010557 449 TRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKL 481 (507)
Q Consensus 449 ~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~ 481 (507)
.+|+.|++++|....+|...-.+|+.|.++.|.
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLPESLQSITLHIEQ 188 (426)
T ss_pred CcccEEEecCCCcccCcccccccCcEEEecccc
Confidence 468888888888776666555688888887663
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.75 E-value=0.00013 Score=68.52 Aligned_cols=66 Identities=29% Similarity=0.343 Sum_probs=31.9
Q ss_pred CCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC-CCCCCCccEEEccCCCCcccCC
Q 010557 401 ISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIFRIGH 466 (507)
Q Consensus 401 L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~N~Is~IP~ 466 (507)
+.....|+..+|++|.+..+|+..-. ..++.|+|++|+|+.+|. +..++.|+.|+++.|.|...|.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~ 117 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPR 117 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchH
Confidence 33344444445555555555442221 244555555555555543 5555555555555555554443
No 48
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.63 E-value=0.00098 Score=67.47 Aligned_cols=81 Identities=25% Similarity=0.407 Sum_probs=58.2
Q ss_pred CcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCC-----CCCCCCCcEEECCCCCCCCC---cCCCCCCCccEEEc
Q 010557 385 SAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPT-----GSMPKGLHTLNLSRNKINTI---EGLREMTRLRVLDL 456 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp-----~sf~~sL~~LdLS~NkLs~L---p~L~~L~sL~~LdL 456 (507)
|+.|.+.+..++.+..|..|++|+.|.++.|.+..... ... ++|++|+|++|+|..+ ..+..+.+|..|++
T Consensus 45 le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~-P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl 123 (260)
T KOG2739|consen 45 LELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKA-PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL 123 (260)
T ss_pred hhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhC-CceeEEeecCCccccccccchhhhhcchhhhhc
Confidence 45667777788877788888899999999984332221 111 6889999999988754 45777778888888
Q ss_pred cCCCCcccCC
Q 010557 457 SYNRIFRIGH 466 (507)
Q Consensus 457 S~N~Is~IP~ 466 (507)
..|..+.+..
T Consensus 124 ~n~~~~~l~d 133 (260)
T KOG2739|consen 124 FNCSVTNLDD 133 (260)
T ss_pred ccCCcccccc
Confidence 8887776443
No 49
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.0001 Score=75.73 Aligned_cols=78 Identities=26% Similarity=0.279 Sum_probs=56.6
Q ss_pred CcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcC---CCCCCCccEEEccCCCC
Q 010557 385 SAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG---LREMTRLRVLDLSYNRI 461 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~---L~~L~sL~~LdLS~N~I 461 (507)
+..|++-|+.|..|.-...|+.|+.|.||-|.|+.+.+..-.++|+.|+|..|.|..+.. +.+|++|++|-|..|.-
T Consensus 21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred hhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence 466788888888877556778888888888888777664433677777777777777643 67777777777777765
Q ss_pred c
Q 010557 462 F 462 (507)
Q Consensus 462 s 462 (507)
.
T Consensus 101 c 101 (388)
T KOG2123|consen 101 C 101 (388)
T ss_pred c
Confidence 4
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.10 E-value=0.0026 Score=74.43 Aligned_cols=96 Identities=22% Similarity=0.232 Sum_probs=64.6
Q ss_pred CCcEEEccCCC--CCCCC--CCCCCCCCCEEEccCCC-CCCcCCCCCC-CCCcEEECCCCCCCCCcC-CCCCCCccEEEc
Q 010557 384 SSAVAHIAGIG--LKAIP--TISHFSSLRSVNLSNNF-IVHIPTGSMP-KGLHTLNLSRNKINTIEG-LREMTRLRVLDL 456 (507)
Q Consensus 384 sLt~L~LS~N~--Lt~LP--~L~~L~sL~~LdLS~N~-Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdL 456 (507)
.|+.|.+.+|. +..++ .|..++.|+.|||++|. +..+|..... -+|++|+|++..|+.+|. +.+|..|.+||+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecc
Confidence 36777777775 56666 47778888888888663 5556553332 578888888888888774 888888888888
Q ss_pred cCCCCc-ccCC--CCCCCCCEEEcCC
Q 010557 457 SYNRIF-RIGH--GNILSKPVFWLSF 479 (507)
Q Consensus 457 S~N~Is-~IP~--~~f~sL~~L~LS~ 479 (507)
..+... .++. ..+.+|++|.+..
T Consensus 626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 626 EVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccccccccccchhhhcccccEEEeec
Confidence 877543 3332 2245777765543
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.99 E-value=0.0056 Score=69.98 Aligned_cols=123 Identities=20% Similarity=0.158 Sum_probs=84.9
Q ss_pred cccccccCCccccc-cchhhhccccCCcEEEccCCCCCC--CC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECC
Q 010557 360 TRRSEINLSEEILH-ANSVIRSLNSSSAVAHIAGIGLKA--IP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLS 435 (507)
Q Consensus 360 ~~~ldLsLn~~il~-~~s~l~~Lp~sLt~L~LS~N~Lt~--LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS 435 (507)
+.++|++....... -+..++.+-+.|+.|.+.+-.+.. +- -..+|++|..||+|+..|+.+....-.++|+.|-+.
T Consensus 124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMR 203 (699)
T ss_pred hhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhcc
Confidence 35555554333322 233455555568999999877752 22 467889999999999999988444334788888887
Q ss_pred CCCCCCC---cCCCCCCCccEEEccCCCCcccCC---------CCCCCCCEEEcCCCCC
Q 010557 436 RNKINTI---EGLREMTRLRVLDLSYNRIFRIGH---------GNILSKPVFWLSFKLF 482 (507)
Q Consensus 436 ~NkLs~L---p~L~~L~sL~~LdLS~N~Is~IP~---------~~f~sL~~L~LS~N~L 482 (507)
+=.+..- -.+.+|++|++||+|.......+. ..++.|+.|+.|+..+
T Consensus 204 nLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 204 NLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred CCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 7666653 357789999999999876654331 4577899999998766
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.96 E-value=0.0043 Score=72.64 Aligned_cols=98 Identities=24% Similarity=0.263 Sum_probs=81.1
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCCCEEEccCCC--CCCcCCCCCC--CCCcEEECCCCC-CCCCcC-CCCCCCccEEEcc
Q 010557 384 SSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNF--IVHIPTGSMP--KGLHTLNLSRNK-INTIEG-LREMTRLRVLDLS 457 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~--Is~Ipp~sf~--~sL~~LdLS~Nk-Ls~Lp~-L~~L~sL~~LdLS 457 (507)
.++.+.+.+|.+..++.-...+.|+.|-+..|. +..++...|. +.|+.|||++|. +..+|. ++.|-+|+.|+|+
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 357889999999988844455689999999996 7778776665 899999999875 777886 8999999999999
Q ss_pred CCCCcccCCC--CCCCCCEEEcCCCC
Q 010557 458 YNRIFRIGHG--NILSKPVFWLSFKL 481 (507)
Q Consensus 458 ~N~Is~IP~~--~f~sL~~L~LS~N~ 481 (507)
+..|+.+|.+ .+..|.+|++..+.
T Consensus 604 ~t~I~~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 604 DTGISHLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred CCCccccchHHHHHHhhheecccccc
Confidence 9999999984 56688888888765
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.0039 Score=64.92 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=63.7
Q ss_pred cCCccccccchhhh---ccccCCcEEEccCCCCCCC---C-CCCCCCCCCEEEccCCCCCCcCCCC-CC-CCCcEEECCC
Q 010557 366 NLSEEILHANSVIR---SLNSSSAVAHIAGIGLKAI---P-TISHFSSLRSVNLSNNFIVHIPTGS-MP-KGLHTLNLSR 436 (507)
Q Consensus 366 sLn~~il~~~s~l~---~Lp~sLt~L~LS~N~Lt~L---P-~L~~L~sL~~LdLS~N~Is~Ipp~s-f~-~sL~~LdLS~ 436 (507)
.+++.++...+.+. ..-..++.|+|.+|.|+.. - -+.+|+.|+.|+|++|.+...+... ++ .+|++|-|.+
T Consensus 51 vln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 51 VLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG 130 (418)
T ss_pred eecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC
Confidence 34555555444433 3334467789999998843 3 4678899999999999888755543 34 7888888888
Q ss_pred CCCCCC--c-CCCCCCCccEEEccCCCC
Q 010557 437 NKINTI--E-GLREMTRLRVLDLSYNRI 461 (507)
Q Consensus 437 NkLs~L--p-~L~~L~sL~~LdLS~N~I 461 (507)
..+..- . .+..++.++.|.++.|.+
T Consensus 131 T~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 131 TGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred CCCChhhhhhhhhcchhhhhhhhccchh
Confidence 777652 2 256666666666666643
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.37 E-value=0.066 Score=58.06 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=60.6
Q ss_pred ccccCCcEEEccC-CCCCCCC-CCCCCCCCCEEEccCC-CCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEc
Q 010557 380 SLNSSSAVAHIAG-IGLKAIP-TISHFSSLRSVNLSNN-FIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDL 456 (507)
Q Consensus 380 ~Lp~sLt~L~LS~-N~Lt~LP-~L~~L~sL~~LdLS~N-~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdL 456 (507)
.+|..|+.|.+++ +.++.+| .+ ..+|+.|.|++| .|..+ +.+|..|+|+.|.+..+..+. .+|+.|.+
T Consensus 69 ~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~L~~n~~~~L~~LP--ssLk~L~I 139 (426)
T PRK15386 69 VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSLEIKGSATDSIKNVP--NGLTSLSI 139 (426)
T ss_pred CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccceEEeCCCCCcccccCc--chHhheec
Confidence 5788888888887 5567777 44 358888888887 55443 346788888877665443221 24667776
Q ss_pred cCCC-C--cccCCCCC-CCCCEEEcCCCCCC
Q 010557 457 SYNR-I--FRIGHGNI-LSKPVFWLSFKLFE 483 (507)
Q Consensus 457 S~N~-I--s~IP~~~f-~sL~~L~LS~N~Ls 483 (507)
.+++ + ..++. .+ .+|+.|.++++...
T Consensus 140 ~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 140 NSYNPENQARIDN-LISPSLKTLSLTGCSNI 169 (426)
T ss_pred ccccccccccccc-ccCCcccEEEecCCCcc
Confidence 4432 2 22332 34 48999999887753
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.00087 Score=69.07 Aligned_cols=92 Identities=21% Similarity=0.218 Sum_probs=66.3
Q ss_pred ccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC---CCCcEEECCCCCC
Q 010557 363 SEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP---KGLHTLNLSRNKI 439 (507)
Q Consensus 363 ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~---~sL~~LdLS~NkL 439 (507)
..|+.-+.-+..++....+| .|++|.|+-|.|+.+..|..++.|++|+|..|.|..+.....+ ++|+.|.|..|.-
T Consensus 22 kKLNcwg~~L~DIsic~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 22 KKLNCWGCGLDDISICEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred hhhcccCCCccHHHHHHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence 34566666677777777765 4688888888888888788888888888888888887764333 6788888888876
Q ss_pred CCCcC-------CCCCCCccEEE
Q 010557 440 NTIEG-------LREMTRLRVLD 455 (507)
Q Consensus 440 s~Lp~-------L~~L~sL~~Ld 455 (507)
.+-.+ ++-|++|+.||
T Consensus 101 c~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 101 CGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccccchhHHHHHHHHcccchhcc
Confidence 65311 55566666653
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.03 E-value=0.0087 Score=60.76 Aligned_cols=83 Identities=20% Similarity=0.183 Sum_probs=58.5
Q ss_pred CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCC--CCCC-CcC-CCCCCCccEEEccCCCCcccC---C-CCCCC
Q 010557 400 TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRN--KINT-IEG-LREMTRLRVLDLSYNRIFRIG---H-GNILS 471 (507)
Q Consensus 400 ~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~N--kLs~-Lp~-L~~L~sL~~LdLS~N~Is~IP---~-~~f~s 471 (507)
..-.+..|+.|.+.+-.++.+....+.++|+.|.+|.| .++. ++- ...+++|++|+|++|+|..+. . ..+.+
T Consensus 38 l~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 44566777777777777777766555589999999999 4443 433 445699999999999988532 2 34556
Q ss_pred CCEEEcCCCCC
Q 010557 472 KPVFWLSFKLF 482 (507)
Q Consensus 472 L~~L~LS~N~L 482 (507)
|..|++.++..
T Consensus 118 L~~Ldl~n~~~ 128 (260)
T KOG2739|consen 118 LKSLDLFNCSV 128 (260)
T ss_pred hhhhhcccCCc
Confidence 66677666543
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.94 E-value=0.086 Score=45.58 Aligned_cols=91 Identities=22% Similarity=0.367 Sum_probs=54.9
Q ss_pred CcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccC
Q 010557 385 SAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSY 458 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~ 458 (507)
|+.+.+.. .+..|+ .|..+++|+.|.+..+ +..+....|. ..|..+.+.. .+..++. |..++.|+.+.+..
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 56667663 577776 6888888999988875 8888887776 4788888865 5555543 77788898888877
Q ss_pred CCCcccCCCCCC--CCCEEEcCC
Q 010557 459 NRIFRIGHGNIL--SKPVFWLSF 479 (507)
Q Consensus 459 N~Is~IP~~~f~--sL~~L~LS~ 479 (507)
| +..|+...|. .|+.+.+..
T Consensus 91 ~-~~~i~~~~f~~~~l~~i~~~~ 112 (129)
T PF13306_consen 91 N-ITEIGSSSFSNCNLKEINIPS 112 (129)
T ss_dssp T--BEEHTTTTTT-T--EEE-TT
T ss_pred c-ccEEchhhhcCCCceEEEECC
Confidence 6 7777776665 555555544
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.38 E-value=0.013 Score=66.98 Aligned_cols=112 Identities=22% Similarity=0.264 Sum_probs=78.8
Q ss_pred CCcEEEccCCCCC--CCC--CCCCCCCCCEEEccCCCCCCcCC----CCCCCCCcEEECCCCCCCCCcCCCCCCCccEEE
Q 010557 384 SSAVAHIAGIGLK--AIP--TISHFSSLRSVNLSNNFIVHIPT----GSMPKGLHTLNLSRNKINTIEGLREMTRLRVLD 455 (507)
Q Consensus 384 sLt~L~LS~N~Lt--~LP--~L~~L~sL~~LdLS~N~Is~Ipp----~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~Ld 455 (507)
.|+.|+++|...- .-| --..||+|+.|.+++-.+..-.- ..| ++|..||+|+..|+.+.+++.|++|++|.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sF-pNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASF-PNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhcc-CccceeecCCCCccCcHHHhccccHHHHh
Confidence 4788899887643 223 34568999999999877654321 223 69999999999999999999999999998
Q ss_pred ccCCCCcccCC----CCCCCCCEEEcCCCCC-----------CCCCCCCCCCcCCe
Q 010557 456 LSYNRIFRIGH----GNILSKPVFWLSFKLF-----------EFLTIIPNCKRLSC 496 (507)
Q Consensus 456 LS~N~Is~IP~----~~f~sL~~L~LS~N~L-----------s~L~~L~nL~~Lsc 496 (507)
+.+=.|..-.. -.+..|+.|++|.... +....+++|+-|+|
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDc 257 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDC 257 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEec
Confidence 86655553221 3456899999997543 22234556666666
No 59
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=92.11 E-value=0.077 Score=56.21 Aligned_cols=100 Identities=21% Similarity=0.116 Sum_probs=62.3
Q ss_pred cCCcEEEccCCCCCCCC------CCCCCCCCCEEEccCCCCCCcCC----CCC-C-CCCcEEECCCCCCCCC------cC
Q 010557 383 SSSAVAHIAGIGLKAIP------TISHFSSLRSVNLSNNFIVHIPT----GSM-P-KGLHTLNLSRNKINTI------EG 444 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt~LP------~L~~L~sL~~LdLS~N~Is~Ipp----~sf-~-~sL~~LdLS~NkLs~L------p~ 444 (507)
..|+++++++|.+..-+ .|...+.|+.+.++.|.|..=.- ..| . ++|+.|||..|-++.. ..
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 34677777777776433 35556777777777776653111 111 1 6777777777777652 12
Q ss_pred CCCCCCccEEEccCCCCcccCC--------CCCCCCCEEEcCCCCC
Q 010557 445 LREMTRLRVLDLSYNRIFRIGH--------GNILSKPVFWLSFKLF 482 (507)
Q Consensus 445 L~~L~sL~~LdLS~N~Is~IP~--------~~f~sL~~L~LS~N~L 482 (507)
+..++.|+.|+++++.+..=.. ..+++|..|.|.+|.|
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 6666777777777777764222 3466777777777776
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.60 E-value=0.1 Score=33.38 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=14.6
Q ss_pred CccEEEccCCCCcccCCCCCCC
Q 010557 450 RLRVLDLSYNRIFRIGHGNILS 471 (507)
Q Consensus 450 sL~~LdLS~N~Is~IP~~~f~s 471 (507)
+|+.|+|++|+|+.||.. |.+
T Consensus 1 ~L~~Ldls~n~l~~ip~~-~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS-FSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTT-TTT
T ss_pred CccEEECCCCcCEeCChh-hcC
Confidence 467777777777777765 543
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.06 E-value=0.67 Score=39.96 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=53.5
Q ss_pred CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCCcccCCCCCC---CC
Q 010557 400 TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIFRIGHGNIL---SK 472 (507)
Q Consensus 400 ~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~~~f~---sL 472 (507)
.|..+++|+.+.+.. .+..|....|. .+|+.+.+..+ +..++. |..+..|+.+.+.. .+..++...|. .|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 678888999999985 68899998887 58999999886 887764 88898899999975 77778876665 77
Q ss_pred CEEEcCCC
Q 010557 473 PVFWLSFK 480 (507)
Q Consensus 473 ~~L~LS~N 480 (507)
+.+.+..|
T Consensus 84 ~~i~~~~~ 91 (129)
T PF13306_consen 84 KNIDIPSN 91 (129)
T ss_dssp CEEEETTT
T ss_pred cccccCcc
Confidence 77888665
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.56 E-value=0.22 Score=52.32 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=38.3
Q ss_pred ccccCCccccccch----hhhccccCCcEEEccCCCCC-CCCCC-CCCCCCCEEEccCCCCCCcCCCCCC---CCCcEEE
Q 010557 363 SEINLSEEILHANS----VIRSLNSSSAVAHIAGIGLK-AIPTI-SHFSSLRSVNLSNNFIVHIPTGSMP---KGLHTLN 433 (507)
Q Consensus 363 ldLsLn~~il~~~s----~l~~Lp~sLt~L~LS~N~Lt-~LP~L-~~L~sL~~LdLS~N~Is~Ipp~sf~---~sL~~Ld 433 (507)
..+.|.++.+..=+ .+..+|. |++|+|+.|.|. .|..+ ..+.+|+.|-|.+..+.--....+. +.++.|.
T Consensus 74 ~elDL~~N~iSdWseI~~ile~lP~-l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 74 KELDLTGNLISDWSEIGAILEQLPA-LTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH 152 (418)
T ss_pred hhhhcccchhccHHHHHHHHhcCcc-ceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence 33455555554222 2334443 677888888776 33333 3456666666666554432222222 3455555
Q ss_pred CCCCC
Q 010557 434 LSRNK 438 (507)
Q Consensus 434 LS~Nk 438 (507)
+|.|.
T Consensus 153 mS~N~ 157 (418)
T KOG2982|consen 153 MSDNS 157 (418)
T ss_pred hccch
Confidence 55553
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=90.44 E-value=0.088 Score=55.79 Aligned_cols=99 Identities=21% Similarity=0.170 Sum_probs=60.7
Q ss_pred CCcEEEccCCCCCCCC---------------CCCCCCCCCEEEccCCCCCCcCCCCC----C--CCCcEEECCCCCCCC-
Q 010557 384 SSAVAHIAGIGLKAIP---------------TISHFSSLRSVNLSNNFIVHIPTGSM----P--KGLHTLNLSRNKINT- 441 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP---------------~L~~L~sL~~LdLS~N~Is~Ipp~sf----~--~sL~~LdLS~NkLs~- 441 (507)
.|+.|+|.+|.|...- -+..-+.|+.+....|++..-+.... . +.|+.+.++.|.|..
T Consensus 121 ~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~e 200 (382)
T KOG1909|consen 121 DLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPE 200 (382)
T ss_pred CHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCc
Confidence 3566777777766221 13445677777777777766544221 1 467777777777654
Q ss_pred -C----cCCCCCCCccEEEccCCCCcccCC-------CCCCCCCEEEcCCCCC
Q 010557 442 -I----EGLREMTRLRVLDLSYNRIFRIGH-------GNILSKPVFWLSFKLF 482 (507)
Q Consensus 442 -L----p~L~~L~sL~~LdLS~N~Is~IP~-------~~f~sL~~L~LS~N~L 482 (507)
+ .+|..++.|++|||..|-++.-.. ..|+.|+.|++++-.+
T Consensus 201 G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 201 GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 2 236677777777777777764332 3455666777766555
No 64
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.90 E-value=0.2 Score=32.85 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=18.2
Q ss_pred CCCccEEEccCCCCcccCCCCCC
Q 010557 448 MTRLRVLDLSYNRIFRIGHGNIL 470 (507)
Q Consensus 448 L~sL~~LdLS~N~Is~IP~~~f~ 470 (507)
|++|+.|+|++|+|+.||.+.|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788888888888888877664
No 65
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.90 E-value=0.2 Score=32.85 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=18.2
Q ss_pred CCCccEEEccCCCCcccCCCCCC
Q 010557 448 MTRLRVLDLSYNRIFRIGHGNIL 470 (507)
Q Consensus 448 L~sL~~LdLS~N~Is~IP~~~f~ 470 (507)
|++|+.|+|++|+|+.||.+.|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788888888888888877664
No 66
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.83 E-value=0.22 Score=32.61 Aligned_cols=22 Identities=36% Similarity=0.739 Sum_probs=16.3
Q ss_pred CCCCCEEEccCCCCCCcCCCCC
Q 010557 404 FSSLRSVNLSNNFIVHIPTGSM 425 (507)
Q Consensus 404 L~sL~~LdLS~N~Is~Ipp~sf 425 (507)
|++|+.|+|++|.|+.|+++.|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4577788888888888777655
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.83 E-value=0.22 Score=32.61 Aligned_cols=22 Identities=36% Similarity=0.739 Sum_probs=16.3
Q ss_pred CCCCCEEEccCCCCCCcCCCCC
Q 010557 404 FSSLRSVNLSNNFIVHIPTGSM 425 (507)
Q Consensus 404 L~sL~~LdLS~N~Is~Ipp~sf 425 (507)
|++|+.|+|++|.|+.|+++.|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4577788888888888777655
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=86.90 E-value=0.42 Score=29.02 Aligned_cols=16 Identities=50% Similarity=0.679 Sum_probs=6.4
Q ss_pred CccEEEccCCCCcccC
Q 010557 450 RLRVLDLSYNRIFRIG 465 (507)
Q Consensus 450 sL~~LdLS~N~Is~IP 465 (507)
+|+.|+|++|+|+.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=84.36 E-value=0.64 Score=28.20 Aligned_cols=12 Identities=50% Similarity=0.767 Sum_probs=3.5
Q ss_pred CCEEEccCCCCC
Q 010557 407 LRSVNLSNNFIV 418 (507)
Q Consensus 407 L~~LdLS~N~Is 418 (507)
|+.|+|++|.|+
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 333344443333
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=84.15 E-value=0.36 Score=30.80 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=10.3
Q ss_pred CCCEEEccCCCCCCcCCC
Q 010557 406 SLRSVNLSNNFIVHIPTG 423 (507)
Q Consensus 406 sL~~LdLS~N~Is~Ipp~ 423 (507)
+|++|+|++|.|+.||+.
T Consensus 1 ~L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp TESEEEETSSEESEEGTT
T ss_pred CccEEECCCCcCEeCChh
Confidence 355666666666655554
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=77.42 E-value=1.4 Score=46.16 Aligned_cols=107 Identities=19% Similarity=0.144 Sum_probs=75.3
Q ss_pred hhhccccCCcEEEccCCCCC-CCC-----CCCCCCCCCEEEccCCCCCCcCCCCC--------------C-CCCcEEECC
Q 010557 377 VIRSLNSSSAVAHIAGIGLK-AIP-----TISHFSSLRSVNLSNNFIVHIPTGSM--------------P-KGLHTLNLS 435 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~Lt-~LP-----~L~~L~sL~~LdLS~N~Is~Ipp~sf--------------~-~sL~~LdLS 435 (507)
.+.+.|. ++..+||.|-+. ..| -|.+-+.|.+|.|++|.+-.+..+.. . +.|++....
T Consensus 87 aLlkcp~-l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPR-LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCc-ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 3444444 688899999887 333 46788999999999998776554211 1 578889999
Q ss_pred CCCCCCCc------CCCCCCCccEEEccCCCCccc--CC------CCCCCCCEEEcCCCCCCC
Q 010557 436 RNKINTIE------GLREMTRLRVLDLSYNRIFRI--GH------GNILSKPVFWLSFKLFEF 484 (507)
Q Consensus 436 ~NkLs~Lp------~L~~L~sL~~LdLS~N~Is~I--P~------~~f~sL~~L~LS~N~Ls~ 484 (507)
.|++..-+ .|..-..|..+.+..|-|..- -. ....+|..|+|..|-|+.
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 99887743 254456788999999988732 11 234588899999998843
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=76.41 E-value=0.074 Score=54.13 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=54.5
Q ss_pred CcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcC-CCCCCCccEEEccCCCC
Q 010557 385 SAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRI 461 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~N~I 461 (507)
.+.|+++.|.+..+- .|..++.|..|+++.|.|..+|...-. ..+..+++..|.++.+|. +..++.++.+++-+|.+
T Consensus 44 ~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 44 VTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred eeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcc
Confidence 466777777777665 677777777777777777777665443 456666777777777764 77777777777777765
Q ss_pred c
Q 010557 462 F 462 (507)
Q Consensus 462 s 462 (507)
.
T Consensus 124 ~ 124 (326)
T KOG0473|consen 124 F 124 (326)
T ss_pred h
Confidence 5
No 73
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.85 E-value=1.2 Score=49.75 Aligned_cols=59 Identities=36% Similarity=0.420 Sum_probs=29.9
Q ss_pred CCCCCCEEEccCCCCCCcCCCCCC----CCCcEEECCCC--CCCCCc---CCCCCCCccEEEccCCCCc
Q 010557 403 HFSSLRSVNLSNNFIVHIPTGSMP----KGLHTLNLSRN--KINTIE---GLREMTRLRVLDLSYNRIF 462 (507)
Q Consensus 403 ~L~sL~~LdLS~N~Is~Ipp~sf~----~sL~~LdLS~N--kLs~Lp---~L~~L~sL~~LdLS~N~Is 462 (507)
+++.+..|+|++|++..+....-. ++|..|+|++| .+..-+ .++.+ .|+.|-|.+|.|.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccc
Confidence 445555556666666555442111 45666666666 333322 23322 3556666666655
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=72.97 E-value=0.098 Score=53.24 Aligned_cols=82 Identities=16% Similarity=0.071 Sum_probs=42.3
Q ss_pred CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcC-CCCCCCccEEEccCCCCcccCC--CCCCCCCEE
Q 010557 400 TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIFRIGH--GNILSKPVF 475 (507)
Q Consensus 400 ~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~N~Is~IP~--~~f~sL~~L 475 (507)
.+..+...+.||++.|++..+....-. +.|..|+++.|.|..+|. +..+..+..+++-.|..+.+|. +..+.++.+
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 455555556666666655554433221 445555666666655543 5555555555555555555443 334444444
Q ss_pred EcCCCC
Q 010557 476 WLSFKL 481 (507)
Q Consensus 476 ~LS~N~ 481 (507)
.+-.|.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 444444
No 75
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.34 E-value=1.2 Score=49.80 Aligned_cols=75 Identities=23% Similarity=0.240 Sum_probs=55.7
Q ss_pred CCCcEEECCCCCCCCCcCCC----CCCCccEEEccCC--CCcc---cCCCCCCCCCEEEcCCCCCCC------------C
Q 010557 427 KGLHTLNLSRNKINTIEGLR----EMTRLRVLDLSYN--RIFR---IGHGNILSKPVFWLSFKLFEF------------L 485 (507)
Q Consensus 427 ~sL~~LdLS~NkLs~Lp~L~----~L~sL~~LdLS~N--~Is~---IP~~~f~sL~~L~LS~N~Ls~------------L 485 (507)
..+..+.|++|+|..+..+. ..++|.+|+|++| .+.. ++.-....|+.|+|-+|.+.. .
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~ 297 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIR 297 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHHH
Confidence 57889999999999886533 3578999999999 4442 333455577889999998821 2
Q ss_pred CCCCCCCcCCeeeCCC
Q 010557 486 TIIPNCKRLSCNLYNS 501 (507)
Q Consensus 486 ~~L~nL~~LscnlIs~ 501 (507)
..+++|..|+...+..
T Consensus 298 ~~FPKL~~LDG~ev~~ 313 (585)
T KOG3763|consen 298 ELFPKLLRLDGVEVQP 313 (585)
T ss_pred HhcchheeecCcccCc
Confidence 4678888888766654
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.76 E-value=4.7 Score=27.30 Aligned_cols=17 Identities=53% Similarity=0.620 Sum_probs=10.4
Q ss_pred CCccEEEccCCCCcccC
Q 010557 449 TRLRVLDLSYNRIFRIG 465 (507)
Q Consensus 449 ~sL~~LdLS~N~Is~IP 465 (507)
++|+.|+|+.|+|+.|.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 45666666666666553
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.36 E-value=3.9 Score=27.93 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=11.2
Q ss_pred cCCcEEEccCCCCCCCCC
Q 010557 383 SSSAVAHIAGIGLKAIPT 400 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt~LP~ 400 (507)
..|+.|++++|+|+.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 345666666666666664
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=66.21 E-value=2.8 Score=43.94 Aligned_cols=98 Identities=20% Similarity=0.143 Sum_probs=67.2
Q ss_pred cCCcEEEccCCCCCCCC--CC-------------CCCCCCCEEEccCCCCCCcCCCCC----C--CCCcEEECCCCCCCC
Q 010557 383 SSSAVAHIAGIGLKAIP--TI-------------SHFSSLRSVNLSNNFIVHIPTGSM----P--KGLHTLNLSRNKINT 441 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt~LP--~L-------------~~L~sL~~LdLS~N~Is~Ipp~sf----~--~sL~~LdLS~NkLs~ 441 (507)
..|.+|.+++|.+..+. .| ..-+.|+.+....|++..-+.... . ..|+.+.+..|.|..
T Consensus 120 t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrp 199 (388)
T COG5238 120 TDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRP 199 (388)
T ss_pred CCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCc
Confidence 34788999999987543 22 344889999999998887655221 1 478888898888874
Q ss_pred --C-----cCCCCCCCccEEEccCCCCcccCC-------CCCCCCCEEEcCCC
Q 010557 442 --I-----EGLREMTRLRVLDLSYNRIFRIGH-------GNILSKPVFWLSFK 480 (507)
Q Consensus 442 --L-----p~L~~L~sL~~LdLS~N~Is~IP~-------~~f~sL~~L~LS~N 480 (507)
+ .++.-+.+|.+|+|..|-++.... ..++.|+.|.+...
T Consensus 200 egv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 200 EGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred chhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 2 246667889999999998885544 23334555655443
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.87 E-value=5.5 Score=26.99 Aligned_cols=16 Identities=56% Similarity=0.794 Sum_probs=7.5
Q ss_pred CCcEEECCCCCCCCCc
Q 010557 428 GLHTLNLSRNKINTIE 443 (507)
Q Consensus 428 sL~~LdLS~NkLs~Lp 443 (507)
+|+.|+|++|+|+.++
T Consensus 3 ~L~~L~L~~NkI~~IE 18 (26)
T smart00365 3 NLEELDLSQNKIKKIE 18 (26)
T ss_pred ccCEEECCCCccceec
Confidence 3444455555444443
No 80
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=61.61 E-value=0.66 Score=48.88 Aligned_cols=79 Identities=27% Similarity=0.278 Sum_probs=45.3
Q ss_pred ccCCcEEEccCC-CCCCC--C-CCCCCCCCCEEEccCCCCCCcCCCC----CCCCCcEEECCCCCC----CCCcC-CCCC
Q 010557 382 NSSSAVAHIAGI-GLKAI--P-TISHFSSLRSVNLSNNFIVHIPTGS----MPKGLHTLNLSRNKI----NTIEG-LREM 448 (507)
Q Consensus 382 p~sLt~L~LS~N-~Lt~L--P-~L~~L~sL~~LdLS~N~Is~Ipp~s----f~~sL~~LdLS~NkL----s~Lp~-L~~L 448 (507)
+..|+.|+|+.+ +|++- . -+..++.|..|+|++..+..-.-.. ...+|..|+|++..= +.+.. ...+
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence 345677888774 46643 2 5677788888888887665411111 114566666666421 11222 3456
Q ss_pred CCccEEEccCCC
Q 010557 449 TRLRVLDLSYNR 460 (507)
Q Consensus 449 ~sL~~LdLS~N~ 460 (507)
+.|..|||+.|.
T Consensus 313 p~l~~LDLSD~v 324 (419)
T KOG2120|consen 313 PNLVHLDLSDSV 324 (419)
T ss_pred Cceeeecccccc
Confidence 777777777653
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=53.16 E-value=8.2 Score=26.37 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=11.1
Q ss_pred CccEEEccCCCCcccCC
Q 010557 450 RLRVLDLSYNRIFRIGH 466 (507)
Q Consensus 450 sL~~LdLS~N~Is~IP~ 466 (507)
.|+.|++++|+++.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46666677777666664
No 82
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=46.13 E-value=0.73 Score=48.59 Aligned_cols=96 Identities=24% Similarity=0.114 Sum_probs=49.6
Q ss_pred CcEEEccCCCCC-CCC-CCCCCCCCCEEEccCC-CCCCcCCCCCC---CCCcEEECCCCCCCC--CcC-CCC-CCCccEE
Q 010557 385 SAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNN-FIVHIPTGSMP---KGLHTLNLSRNKINT--IEG-LRE-MTRLRVL 454 (507)
Q Consensus 385 Lt~L~LS~N~Lt-~LP-~L~~L~sL~~LdLS~N-~Is~Ipp~sf~---~sL~~LdLS~NkLs~--Lp~-L~~-L~sL~~L 454 (507)
|+-|.|.++.|. .|- .+..-.+|+.|+|++. .|+.-.-..+. +.|..|+|+.+.++. +.. ... -..|+.|
T Consensus 212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L 291 (419)
T KOG2120|consen 212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL 291 (419)
T ss_pred hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence 456667777766 333 5666677777777663 33332111111 566777777766554 111 111 1356666
Q ss_pred EccCCCC----cccC--CCCCCCCCEEEcCCC
Q 010557 455 DLSYNRI----FRIG--HGNILSKPVFWLSFK 480 (507)
Q Consensus 455 dLS~N~I----s~IP--~~~f~sL~~L~LS~N 480 (507)
+|++.+- +.+. ....+.|.+|+|+.+
T Consensus 292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred hhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 6665431 1111 134456777777764
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=45.85 E-value=10 Score=24.19 Aligned_cols=16 Identities=44% Similarity=0.478 Sum_probs=9.1
Q ss_pred CCCccEEEccCCCCcc
Q 010557 448 MTRLRVLDLSYNRIFR 463 (507)
Q Consensus 448 L~sL~~LdLS~N~Is~ 463 (507)
+++|+.|+|++|.|+.
T Consensus 1 ~~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 1 NPNLETLDLSNNQITD 16 (24)
T ss_dssp -TT-SEEE-TSSBEHH
T ss_pred CCCCCEEEccCCcCCH
Confidence 3567777777777663
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=36.66 E-value=28 Score=23.43 Aligned_cols=12 Identities=58% Similarity=0.789 Sum_probs=6.2
Q ss_pred CCCEEEccCCCC
Q 010557 406 SLRSVNLSNNFI 417 (507)
Q Consensus 406 sL~~LdLS~N~I 417 (507)
+|++|+|++|.|
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555554
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.94 E-value=5.5 Score=39.84 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=38.7
Q ss_pred CcEEEccCCCCCCC--CCCCCCCCCCEEEccCC------CCCCcCCCCCCCCCcEEECCCCC-CCC--CcCCCCCCCccE
Q 010557 385 SAVAHIAGIGLKAI--PTISHFSSLRSVNLSNN------FIVHIPTGSMPKGLHTLNLSRNK-INT--IEGLREMTRLRV 453 (507)
Q Consensus 385 Lt~L~LS~N~Lt~L--P~L~~L~sL~~LdLS~N------~Is~Ipp~sf~~sL~~LdLS~Nk-Ls~--Lp~L~~L~sL~~ 453 (507)
++.++-++..|... ..+..++.|+.|.+.+. .|..+.. ...+|+.|+|++|. ||. +..+..+++|+.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 44556666655532 24555555655555443 2233333 22678888888764 665 334555566665
Q ss_pred EEcc
Q 010557 454 LDLS 457 (507)
Q Consensus 454 LdLS 457 (507)
|.|.
T Consensus 181 L~l~ 184 (221)
T KOG3864|consen 181 LHLY 184 (221)
T ss_pred HHhc
Confidence 5553
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.04 E-value=43 Score=44.43 Aligned_cols=30 Identities=33% Similarity=0.428 Sum_probs=23.2
Q ss_pred EccCCCCCCcCCCCCC--CCCcEEECCCCCCC
Q 010557 411 NLSNNFIVHIPTGSMP--KGLHTLNLSRNKIN 440 (507)
Q Consensus 411 dLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs 440 (507)
||++|.|+.|+.+.|. .+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 5788888888887775 57888888888765
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.24 E-value=56 Score=43.41 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=27.3
Q ss_pred EccCCCCCCCC--CCCCCCCCCEEEccCCCCCC
Q 010557 389 HIAGIGLKAIP--TISHFSSLRSVNLSNNFIVH 419 (507)
Q Consensus 389 ~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~ 419 (507)
+|++|+|+.|| .|..|.+|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 57899999998 78889999999999998765
Done!