Query 010557
Match_columns 507
No_of_seqs 281 out of 2230
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 09:22:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010557.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010557hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g8a_A TOLL-like receptor 4; l 99.5 1.9E-14 6.6E-19 150.7 12.3 128 378-505 47-186 (635)
2 3m19_A Variable lymphocyte rec 99.5 1.8E-13 6E-18 130.6 17.2 128 377-505 54-192 (251)
3 2v9t_B SLIT homolog 2 protein 99.5 1.1E-13 3.6E-18 130.8 14.6 124 381-504 30-164 (220)
4 3rfs_A Internalin B, repeat mo 99.5 2.3E-13 7.8E-18 131.5 17.2 147 358-505 61-218 (272)
5 1p9a_G Platelet glycoprotein I 99.5 1.8E-13 6.2E-18 134.5 16.5 143 361-504 56-207 (290)
6 3e6j_A Variable lymphocyte rec 99.5 1.7E-13 6E-18 129.8 15.6 124 381-504 38-171 (229)
7 3m19_A Variable lymphocyte rec 99.5 3.1E-13 1.1E-17 128.9 16.6 127 380-506 32-169 (251)
8 3rfs_A Internalin B, repeat mo 99.5 4.5E-13 1.5E-17 129.4 17.8 104 378-482 105-217 (272)
9 1xeu_A Internalin C; cellular 99.5 9.1E-14 3.1E-18 134.8 12.2 142 360-503 41-183 (263)
10 2o6s_A Variable lymphocyte rec 99.5 6.7E-13 2.3E-17 122.6 16.4 120 383-502 28-158 (208)
11 2v70_A SLIT-2, SLIT homolog 2 99.5 2.9E-13 9.9E-18 127.8 13.9 125 380-504 29-165 (220)
12 2o6q_A Variable lymphocyte rec 99.5 8E-13 2.7E-17 127.3 17.1 142 362-504 63-217 (270)
13 2o6q_A Variable lymphocyte rec 99.5 1.4E-12 4.8E-17 125.6 17.0 129 377-506 56-195 (270)
14 1p9a_G Platelet glycoprotein I 99.5 1.1E-12 3.7E-17 129.0 16.5 130 376-506 49-186 (290)
15 1h6u_A Internalin H; cell adhe 99.4 5.6E-13 1.9E-17 131.7 13.7 146 359-505 62-208 (308)
16 1h6t_A Internalin B; cell adhe 99.4 4.6E-13 1.6E-17 131.5 12.8 144 360-504 68-212 (291)
17 4ezg_A Putative uncharacterize 99.4 1.8E-13 6E-18 126.2 8.9 145 360-505 44-194 (197)
18 2xot_A Amphoterin-induced prot 99.4 8.5E-13 2.9E-17 133.0 14.4 125 381-505 37-176 (361)
19 1h6u_A Internalin H; cell adhe 99.4 7.8E-13 2.7E-17 130.7 13.3 146 358-504 83-229 (308)
20 2wfh_A SLIT homolog 2 protein 99.4 7.9E-13 2.7E-17 122.8 12.4 103 380-482 28-138 (193)
21 1h6t_A Internalin B; cell adhe 99.4 4.2E-13 1.4E-17 131.8 10.8 117 365-482 95-212 (291)
22 1xeu_A Internalin C; cellular 99.4 5.3E-13 1.8E-17 129.5 10.9 139 366-506 25-164 (263)
23 3e6j_A Variable lymphocyte rec 99.4 1.8E-12 6.1E-17 122.9 13.6 107 376-483 58-172 (229)
24 1ozn_A Reticulon 4 receptor; N 99.4 5.9E-12 2E-16 121.5 16.9 128 376-504 99-237 (285)
25 1m9s_A Internalin B; cell inva 99.4 1.7E-12 5.9E-17 141.5 13.5 145 359-504 64-209 (605)
26 1m9s_A Internalin B; cell inva 99.4 2.1E-12 7E-17 140.9 14.0 148 358-506 41-189 (605)
27 2o6r_A Variable lymphocyte rec 99.4 4.6E-12 1.6E-16 114.4 14.0 104 380-483 25-137 (177)
28 3zyj_A Leucine-rich repeat-con 99.4 3E-12 1E-16 131.7 14.2 142 363-505 91-244 (440)
29 2v9t_B SLIT homolog 2 protein 99.4 2.9E-12 1E-16 120.9 13.0 105 377-482 51-164 (220)
30 3zyi_A Leucine-rich repeat-con 99.4 3.6E-12 1.2E-16 131.5 14.9 128 376-504 117-254 (452)
31 1w8a_A SLIT protein; signaling 99.4 3.3E-12 1.1E-16 117.9 12.3 104 380-483 26-139 (192)
32 2z62_A TOLL-like receptor 4, v 99.4 3.2E-12 1.1E-16 122.8 12.4 106 377-483 47-162 (276)
33 1ozn_A Reticulon 4 receptor; N 99.4 7.9E-12 2.7E-16 120.6 14.9 143 363-506 59-215 (285)
34 3zyj_A Leucine-rich repeat-con 99.4 8.6E-12 2.9E-16 128.3 16.0 119 385-503 162-290 (440)
35 2o6s_A Variable lymphocyte rec 99.3 1.1E-11 3.9E-16 114.3 14.4 104 378-482 48-160 (208)
36 2xot_A Amphoterin-induced prot 99.3 1.8E-12 6E-17 130.7 9.4 105 380-485 62-178 (361)
37 2ell_A Acidic leucine-rich nuc 99.3 1.5E-12 5.2E-17 116.3 7.9 123 381-503 22-158 (168)
38 2v70_A SLIT-2, SLIT homolog 2 99.3 5E-12 1.7E-16 119.3 11.8 106 377-483 52-166 (220)
39 2wfh_A SLIT homolog 2 protein 99.3 1E-11 3.5E-16 115.3 13.7 116 386-504 13-138 (193)
40 1w8a_A SLIT protein; signaling 99.3 1.7E-11 5.8E-16 113.1 14.9 118 386-505 11-139 (192)
41 2o6r_A Variable lymphocyte rec 99.3 2.4E-11 8.1E-16 109.7 15.5 119 385-505 9-137 (177)
42 1jl5_A Outer protein YOPM; leu 99.3 1.7E-11 5.8E-16 128.2 16.5 124 380-506 128-251 (454)
43 3zyi_A Leucine-rich repeat-con 99.3 1.6E-11 5.4E-16 126.7 15.7 119 385-503 173-301 (452)
44 3g39_A Variable lymphocyte rec 99.3 1.1E-11 3.9E-16 112.5 12.8 95 386-482 12-114 (170)
45 4fcg_A Uncharacterized protein 99.3 5.8E-12 2E-16 125.7 11.3 99 404-502 182-287 (328)
46 4g8a_A TOLL-like receptor 4; l 99.3 6.6E-12 2.3E-16 131.5 11.6 108 376-484 70-187 (635)
47 4ezg_A Putative uncharacterize 99.3 8.1E-12 2.8E-16 115.1 10.8 123 384-506 45-173 (197)
48 4fmz_A Internalin; leucine ric 99.3 8.9E-12 3E-16 122.8 11.8 143 362-505 201-346 (347)
49 1a9n_A U2A', U2A'; complex (nu 99.3 2.1E-12 7E-17 117.0 6.6 98 385-482 21-125 (176)
50 2r9u_A Variable lymphocyte rec 99.3 1.6E-11 5.5E-16 112.3 12.6 94 387-482 16-117 (174)
51 2je0_A Acidic leucine-rich nuc 99.3 3.6E-12 1.2E-16 111.7 7.5 118 382-499 16-147 (149)
52 3vq2_A TLR4, TOLL-like recepto 99.3 2E-11 6.7E-16 129.3 14.3 98 385-482 58-165 (606)
53 4glp_A Monocyte differentiatio 99.3 2.4E-12 8.2E-17 126.4 6.8 121 385-505 171-307 (310)
54 2id5_A Lingo-1, leucine rich r 99.3 2.1E-11 7E-16 125.8 14.0 128 376-504 50-188 (477)
55 1a9n_A U2A', U2A'; complex (nu 99.3 2.9E-12 9.9E-17 116.0 6.4 119 364-482 23-152 (176)
56 3cvr_A Invasion plasmid antige 99.3 3.6E-11 1.2E-15 130.6 16.0 129 365-505 85-220 (571)
57 2xwt_C Thyrotropin receptor; s 99.3 4.4E-12 1.5E-16 119.6 7.7 125 377-502 50-189 (239)
58 3o6n_A APL1; leucine-rich repe 99.3 2.8E-11 9.7E-16 121.8 14.1 107 377-484 88-200 (390)
59 2z81_A CD282 antigen, TOLL-lik 99.3 3.5E-11 1.2E-15 125.5 15.2 139 362-504 363-509 (549)
60 3bz5_A Internalin-J, INLJ; leu 99.3 7.2E-11 2.5E-15 123.6 17.4 117 385-505 87-204 (457)
61 2xwt_C Thyrotropin receptor; s 99.3 7.1E-12 2.4E-16 118.1 8.3 129 377-506 75-219 (239)
62 2z63_A TOLL-like receptor 4, v 99.3 2E-11 6.8E-16 127.5 12.4 106 377-483 47-162 (570)
63 3t6q_A CD180 antigen; protein- 99.3 2.6E-11 9E-16 128.3 13.3 119 376-495 51-180 (606)
64 1o6v_A Internalin A; bacterial 99.3 3.2E-11 1.1E-15 124.9 13.4 118 385-502 267-385 (466)
65 3oja_B Anopheles plasmodium-re 99.3 3.1E-11 1.1E-15 129.5 13.7 125 378-503 119-265 (597)
66 3o6n_A APL1; leucine-rich repe 99.3 5.7E-11 1.9E-15 119.6 14.6 140 364-504 97-260 (390)
67 2z62_A TOLL-like receptor 4, v 99.3 2.8E-11 9.7E-16 116.2 11.9 127 378-505 96-237 (276)
68 4fmz_A Internalin; leucine ric 99.3 4.9E-11 1.7E-15 117.5 13.9 144 361-505 67-212 (347)
69 2id5_A Lingo-1, leucine rich r 99.3 2.4E-11 8.2E-16 125.3 12.1 140 362-502 58-210 (477)
70 3cvr_A Invasion plasmid antige 99.2 3.1E-11 1E-15 131.2 13.5 132 364-505 104-243 (571)
71 1xku_A Decorin; proteoglycan, 99.2 4.3E-11 1.5E-15 117.8 13.1 139 362-502 173-329 (330)
72 1wwl_A Monocyte differentiatio 99.2 6.4E-12 2.2E-16 123.7 7.1 121 385-505 175-309 (312)
73 1xku_A Decorin; proteoglycan, 99.2 7.3E-11 2.5E-15 116.2 14.5 105 377-484 166-277 (330)
74 3v47_A TOLL-like receptor 5B a 99.2 5.2E-11 1.8E-15 121.3 13.7 121 384-504 276-407 (455)
75 2z66_A Variable lymphocyte rec 99.2 3.2E-11 1.1E-15 117.3 11.5 141 363-504 104-260 (306)
76 3oja_B Anopheles plasmodium-re 99.2 5.5E-11 1.9E-15 127.5 14.2 108 377-485 94-207 (597)
77 2ft3_A Biglycan; proteoglycan, 99.2 9.3E-11 3.2E-15 115.7 14.4 117 385-504 104-229 (332)
78 2z80_A TOLL-like receptor 2, v 99.2 1.9E-11 6.5E-16 121.7 9.5 127 377-504 71-210 (353)
79 2ell_A Acidic leucine-rich nuc 99.2 2.2E-11 7.5E-16 108.8 8.8 107 378-485 45-162 (168)
80 3o53_A Protein LRIM1, AGAP0063 99.2 1.5E-11 5.1E-16 121.3 8.4 121 384-504 121-249 (317)
81 4fcg_A Uncharacterized protein 99.2 1.6E-11 5.3E-16 122.6 8.4 140 364-504 85-241 (328)
82 2z66_A Variable lymphocyte rec 99.2 8.3E-11 2.8E-15 114.3 13.3 106 377-483 145-261 (306)
83 1ziw_A TOLL-like receptor 3; i 99.2 5.5E-11 1.9E-15 127.8 13.1 127 377-504 44-183 (680)
84 1jl5_A Outer protein YOPM; leu 99.2 1.7E-10 5.9E-15 120.6 16.2 133 365-505 76-208 (454)
85 2z80_A TOLL-like receptor 2, v 99.2 1.7E-11 5.7E-16 122.1 8.0 142 363-505 79-235 (353)
86 1o6v_A Internalin A; bacterial 99.2 7.4E-11 2.5E-15 122.2 13.1 145 360-505 221-366 (466)
87 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 4.6E-11 1.6E-15 126.4 11.6 104 380-484 49-160 (562)
88 3bz5_A Internalin-J, INLJ; leu 99.2 3.3E-10 1.1E-14 118.6 17.1 139 362-506 87-226 (457)
89 3v47_A TOLL-like receptor 5B a 99.2 1.1E-10 3.6E-15 119.1 12.8 98 385-482 56-166 (455)
90 2z81_A CD282 antigen, TOLL-lik 99.2 1.1E-10 3.8E-15 121.8 13.1 126 378-506 357-487 (549)
91 1ziw_A TOLL-like receptor 3; i 99.2 2.5E-10 8.7E-15 122.7 16.0 98 385-482 482-596 (680)
92 2ft3_A Biglycan; proteoglycan, 99.2 1.9E-10 6.6E-15 113.5 13.6 122 381-505 52-185 (332)
93 3vq2_A TLR4, TOLL-like recepto 99.2 8.7E-11 3E-15 124.3 11.8 125 377-502 75-214 (606)
94 1dce_A Protein (RAB geranylger 99.2 5.2E-11 1.8E-15 128.7 10.2 102 384-485 442-548 (567)
95 1ogq_A PGIP-2, polygalacturona 99.2 2.6E-11 8.9E-16 119.8 7.2 128 375-503 166-302 (313)
96 3oja_A Leucine-rich immune mol 99.2 3.7E-11 1.3E-15 126.6 8.7 121 384-504 121-249 (487)
97 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 9.2E-11 3.1E-15 124.1 11.7 118 386-505 34-159 (562)
98 1ogq_A PGIP-2, polygalacturona 99.2 4.6E-11 1.6E-15 118.0 8.6 140 364-504 129-280 (313)
99 2z63_A TOLL-like receptor 4, v 99.2 7.9E-11 2.7E-15 123.0 10.6 120 383-502 28-159 (570)
100 2z7x_B TOLL-like receptor 1, v 99.2 4.3E-11 1.5E-15 124.6 8.3 121 381-503 19-149 (520)
101 2ifg_A High affinity nerve gro 99.2 8.3E-11 2.8E-15 116.6 9.9 94 389-482 14-115 (347)
102 3o53_A Protein LRIM1, AGAP0063 99.1 2.3E-11 8E-16 119.9 5.9 122 383-505 99-227 (317)
103 1wwl_A Monocyte differentiatio 99.1 5.1E-11 1.8E-15 117.2 8.2 122 383-506 149-288 (312)
104 4eco_A Uncharacterized protein 99.1 1.5E-10 5.2E-15 125.5 12.6 128 377-504 371-525 (636)
105 3g39_A Variable lymphocyte rec 99.1 2E-10 6.7E-15 104.3 11.3 86 380-465 27-118 (170)
106 3t6q_A CD180 antigen; protein- 99.1 1.5E-10 5.1E-15 122.5 11.9 98 385-482 83-191 (606)
107 2z7x_B TOLL-like receptor 1, v 99.1 1.6E-10 5.5E-15 120.2 11.1 128 375-505 341-481 (520)
108 4glp_A Monocyte differentiatio 99.1 7.1E-11 2.4E-15 115.9 8.0 122 383-506 145-286 (310)
109 2r9u_A Variable lymphocyte rec 99.1 2.8E-10 9.6E-15 104.0 11.4 87 380-466 30-122 (174)
110 3g06_A SSPH2 (leucine-rich rep 99.1 5.9E-10 2E-14 122.1 15.8 77 383-465 81-157 (622)
111 3g06_A SSPH2 (leucine-rich rep 99.1 5.2E-10 1.8E-14 122.5 15.0 119 380-505 178-297 (622)
112 4b8c_D Glucose-repressible alc 99.1 7.6E-11 2.6E-15 130.7 8.5 100 384-483 225-329 (727)
113 3oja_A Leucine-rich immune mol 99.1 4.3E-11 1.5E-15 126.1 6.0 121 384-505 100-227 (487)
114 4eco_A Uncharacterized protein 99.1 2.4E-10 8.4E-15 123.9 11.5 120 385-504 435-578 (636)
115 2je0_A Acidic leucine-rich nuc 99.1 1E-10 3.4E-15 102.5 6.7 100 378-478 38-148 (149)
116 3rgz_A Protein brassinosteroid 99.1 1.5E-10 5.2E-15 127.9 8.9 128 376-504 508-716 (768)
117 1dce_A Protein (RAB geranylger 99.1 2.7E-10 9.1E-15 123.2 10.4 112 365-477 446-567 (567)
118 4b8c_D Glucose-repressible alc 99.1 1.5E-10 5E-15 128.5 8.2 117 365-482 229-353 (727)
119 4ecn_A Leucine-rich repeat pro 99.1 8.6E-10 2.9E-14 125.4 14.6 127 378-504 614-765 (876)
120 3j0a_A TOLL-like receptor 5; m 99.1 4.5E-10 1.6E-14 125.3 11.7 98 385-482 50-160 (844)
121 4ecn_A Leucine-rich repeat pro 99.0 3E-10 1E-14 129.2 9.6 119 385-503 493-630 (876)
122 3j0a_A TOLL-like receptor 5; m 99.0 2.8E-09 9.5E-14 119.0 14.6 121 385-505 292-439 (844)
123 1ds9_A Outer arm dynein; leuci 99.0 2.3E-12 7.9E-17 118.8 -8.8 123 377-500 43-185 (198)
124 3rgz_A Protein brassinosteroid 99.0 8.5E-10 2.9E-14 121.9 9.6 128 376-504 412-550 (768)
125 4ay9_X Follicle-stimulating ho 98.9 3.2E-09 1.1E-13 106.3 9.9 101 385-485 106-217 (350)
126 4ay9_X Follicle-stimulating ho 98.9 7.1E-09 2.4E-13 103.7 10.9 117 385-501 130-255 (350)
127 2ifg_A High affinity nerve gro 98.8 9.7E-09 3.3E-13 101.7 9.2 79 384-463 32-117 (347)
128 1ds9_A Outer arm dynein; leuci 98.8 4.5E-11 1.5E-15 110.2 -8.5 118 385-504 25-152 (198)
129 3goz_A Leucine-rich repeat-con 98.6 3.1E-09 1E-13 106.7 -0.0 123 382-504 137-296 (362)
130 3goz_A Leucine-rich repeat-con 98.5 1.2E-08 4.2E-13 102.3 0.9 144 362-505 53-238 (362)
131 2ca6_A RAN GTPase-activating p 98.5 9.8E-09 3.4E-13 103.3 -2.0 144 361-505 95-287 (386)
132 2ca6_A RAN GTPase-activating p 98.4 1.8E-08 6.3E-13 101.3 -0.9 123 383-505 159-316 (386)
133 2ast_B S-phase kinase-associat 98.4 1.6E-08 5.6E-13 98.8 -1.3 53 428-480 196-257 (336)
134 3sb4_A Hypothetical leucine ri 98.4 2E-06 6.7E-11 85.1 12.2 93 404-498 225-327 (329)
135 2ast_B S-phase kinase-associat 98.4 3.3E-08 1.1E-12 96.6 -0.8 121 383-503 93-233 (336)
136 3sb4_A Hypothetical leucine ri 98.3 1.3E-06 4.4E-11 86.4 9.6 93 382-476 225-327 (329)
137 1z7x_W Ribonuclease inhibitor; 98.3 2.7E-08 9.3E-13 101.2 -2.6 78 385-462 30-126 (461)
138 1z7x_W Ribonuclease inhibitor; 98.3 1.8E-08 6.1E-13 102.6 -5.8 100 384-483 86-212 (461)
139 3un9_A NLR family member X1; l 98.0 2.5E-07 8.5E-12 94.8 -3.9 99 384-482 127-251 (372)
140 3un9_A NLR family member X1; l 97.9 2.5E-07 8.4E-12 94.8 -5.5 123 383-505 101-252 (372)
141 1io0_A Tropomodulin; LRR prote 97.7 5E-06 1.7E-10 76.6 -0.7 101 382-482 35-163 (185)
142 3rw6_A Nuclear RNA export fact 97.6 3E-05 1E-09 77.0 4.2 76 388-463 148-234 (267)
143 4fdw_A Leucine rich hypothetic 97.6 0.00024 8.3E-09 73.4 10.7 72 385-458 159-235 (401)
144 4fdw_A Leucine rich hypothetic 97.5 0.0006 2E-08 70.4 12.4 99 383-484 248-359 (401)
145 3rw6_A Nuclear RNA export fact 97.4 7.9E-05 2.7E-09 73.9 3.9 98 401-499 137-261 (267)
146 3ogk_B Coronatine-insensitive 97.2 3.1E-05 1.1E-09 81.2 -1.5 120 384-503 165-304 (592)
147 3rfe_A Platelet glycoprotein I 97.0 0.0012 3.9E-08 58.2 6.5 51 387-439 12-67 (130)
148 3ogk_B Coronatine-insensitive 96.9 0.00016 5.6E-09 75.7 0.7 118 383-500 192-326 (592)
149 1io0_A Tropomodulin; LRR prote 96.9 3.9E-05 1.3E-09 70.5 -3.8 104 401-504 32-163 (185)
150 3rfe_A Platelet glycoprotein I 96.6 0.0038 1.3E-07 54.8 6.8 54 408-462 11-68 (130)
151 2ra8_A Uncharacterized protein 96.6 0.00063 2.2E-08 69.7 1.9 98 384-482 194-319 (362)
152 2p1m_B Transport inhibitor res 96.5 0.00022 7.5E-09 74.7 -2.4 98 384-482 398-518 (594)
153 2p1m_B Transport inhibitor res 96.3 0.00038 1.3E-08 72.9 -2.1 56 380-437 154-221 (594)
154 4gt6_A Cell surface protein; l 95.7 0.021 7.1E-07 57.7 7.7 93 385-481 267-368 (394)
155 1pgv_A TMD-1, tropomodulin TMD 95.7 0.0036 1.2E-07 59.6 1.9 101 382-482 40-169 (197)
156 4h09_A Hypothetical leucine ri 95.6 0.11 3.8E-06 51.6 12.6 94 384-480 241-343 (379)
157 4h09_A Hypothetical leucine ri 95.6 0.037 1.3E-06 55.1 9.0 85 384-471 264-354 (379)
158 3e4g_A ATP synthase subunit S, 95.5 0.0016 5.4E-08 61.0 -1.0 80 384-463 62-154 (176)
159 4gt6_A Cell surface protein; l 95.5 0.025 8.4E-07 57.1 7.5 96 384-482 289-390 (394)
160 2ra8_A Uncharacterized protein 95.3 0.0089 3.1E-07 61.2 3.7 120 383-504 172-319 (362)
161 4fs7_A Uncharacterized protein 94.9 0.03 1E-06 56.4 6.1 78 400-480 292-376 (394)
162 4fs7_A Uncharacterized protein 93.2 0.12 4.2E-06 52.0 6.5 77 384-464 298-380 (394)
163 3e4g_A ATP synthase subunit S, 91.4 0.036 1.2E-06 51.8 -0.0 76 405-480 61-149 (176)
164 1pgv_A TMD-1, tropomodulin TMD 91.1 0.033 1.1E-06 52.9 -0.6 79 402-480 38-136 (197)
No 1
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.54 E-value=1.9e-14 Score=150.67 Aligned_cols=128 Identities=17% Similarity=0.142 Sum_probs=106.4
Q ss_pred hhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCc
Q 010557 378 IRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRL 451 (507)
Q Consensus 378 l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL 451 (507)
..++|..+++|+|++|.|+.|| .|..+++|++|+|++|.|+.|++.+|. ++|++|+|++|+|+.++. |..|++|
T Consensus 47 P~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 47 PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp CSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred CCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 3467888999999999999887 799999999999999999999998776 789999999999999863 8899999
Q ss_pred cEEEccCCCCcccCCCC---CCCCCEEEcCCCCCCC---CCCCCCCCcCCeeeCCCccCC
Q 010557 452 RVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFEF---LTIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 452 ~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls~---L~~L~nL~~LscnlIs~n~~~ 505 (507)
+.|+|++|+|+.++... +.+|+.|+|++|.|.. +..+..++.|....++.|.+.
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 99999999999988754 4578889999998843 355667777777777776543
No 2
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=1.8e-13 Score=130.59 Aligned_cols=128 Identities=18% Similarity=0.293 Sum_probs=104.0
Q ss_pred hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCC
Q 010557 377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTR 450 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~s 450 (507)
.+..++ .|++|+|++|.|+.++ .|..+++|++|+|++|.|+.+++..|. .+|+.|+|++|.|+.++. |..+++
T Consensus 54 ~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 132 (251)
T 3m19_A 54 TFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132 (251)
T ss_dssp TTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred HhcCcc-cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence 455554 4789999999998776 588899999999999999998887664 789999999999998864 788999
Q ss_pred ccEEEccCCCCcccCCCC---CCCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccCC
Q 010557 451 LRVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 451 L~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~~ 505 (507)
|+.|+|++|.|+.++... +.+|+.|+|++|.|..+. .+..+.+|....+++|++.
T Consensus 133 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 999999999999888754 457888999999985543 5777888888888887653
No 3
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=1.1e-13 Score=130.79 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=89.7
Q ss_pred cccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEE
Q 010557 381 LNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVL 454 (507)
Q Consensus 381 Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~L 454 (507)
++..++.|++++|.|+.++ .|..+++|++|+|++|.|+.+.+..|. .+|+.|+|++|.|+.++. |..+++|+.|
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence 4556778888888888776 677778888888888888877776665 678888888888887764 6777888888
Q ss_pred EccCCCCcccCCCCC---CCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccC
Q 010557 455 DLSYNRIFRIGHGNI---LSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 455 dLS~N~Is~IP~~~f---~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~ 504 (507)
+|++|+|+.++...| ++|+.|+|++|.|..+. .+..+.+|....++.|++
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 888888887765443 46777888888775432 366677777777766653
No 4
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=2.3e-13 Score=131.54 Aligned_cols=147 Identities=20% Similarity=0.341 Sum_probs=120.3
Q ss_pred hhcccccccCCccccccchhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEE
Q 010557 358 HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLN 433 (507)
Q Consensus 358 qL~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~Ld 433 (507)
.+..+..|.+.++.+.....+..++ .|++|++++|.|+.++ .|..+++|++|+|++|.|+.+++..+. .+|+.|+
T Consensus 61 ~l~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDISALKELT-NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp GCTTCCEEECTTSCCCCCGGGTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCCcEEECCCCCCCCchhhcCCC-CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 3444455666666666666677765 4799999999999887 489999999999999999999987664 7899999
Q ss_pred CCCCCCCCCcC--CCCCCCccEEEccCCCCcccCCCC---CCCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccCC
Q 010557 434 LSRNKINTIEG--LREMTRLRVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 434 LS~NkLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~~ 505 (507)
|++|.|+.++. +..+++|+.|+|++|+|+.++... +.+|+.|+|++|.|..+. .+..+++|....++.|+..
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 99999999864 789999999999999999988744 568899999999995543 3788889998888888653
No 5
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.52 E-value=1.8e-13 Score=134.54 Aligned_cols=143 Identities=18% Similarity=0.226 Sum_probs=111.7
Q ss_pred ccccccCCccccccchhhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCC
Q 010557 361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRN 437 (507)
Q Consensus 361 ~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~N 437 (507)
.+..|.++.+.+........++ .|+.|++++|.|+.+| .+..+++|++|+|++|.|+.+++..|. .+|+.|+|++|
T Consensus 56 ~L~~L~L~~n~l~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 56 RLTQLNLDRAELTKLQVDGTLP-VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp TCCEEECTTSCCCEEECCSCCT-TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred CCCEEECCCCccCcccCCCCCC-cCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 3444555555555444444443 5799999999999998 788999999999999999999887765 78999999999
Q ss_pred CCCCCcC--CCCCCCccEEEccCCCCcccCCCCC---CCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCccC
Q 010557 438 KINTIEG--LREMTRLRVLDLSYNRIFRIGHGNI---LSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 438 kLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~~~f---~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~~ 504 (507)
+|+.++. |..+++|+.|+|++|+|+.+|.+.| .+|+.|+|++|.|.. +..+..+..|....+..|+.
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 9999864 7889999999999999999988654 578889999999844 45666666777777776654
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=1.7e-13 Score=129.82 Aligned_cols=124 Identities=12% Similarity=0.247 Sum_probs=81.8
Q ss_pred cccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEE
Q 010557 381 LNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVL 454 (507)
Q Consensus 381 Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~L 454 (507)
++..|+.|+|++|.|+.++ .|..+++|++|+|++|.|..+++..|. .+|+.|+|++|.|+.++. |..+++|+.|
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 4456677777777777653 566777777777777777777665543 567777777777777653 5667777777
Q ss_pred EccCCCCcccCCC--CCCCCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCccC
Q 010557 455 DLSYNRIFRIGHG--NILSKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 455 dLS~N~Is~IP~~--~f~sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n~~ 504 (507)
+|++|+|+.||.. .+.+|+.|+|++|.|..+ ..+..+.+|....+..|++
T Consensus 118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp ECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred eccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 7777777776653 445677777777777443 2355666666666666654
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=3.1e-13 Score=128.88 Aligned_cols=127 Identities=17% Similarity=0.249 Sum_probs=111.1
Q ss_pred ccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccE
Q 010557 380 SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRV 453 (507)
Q Consensus 380 ~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~ 453 (507)
.++..++.|+|++|.|+.++ .|..+++|++|+|++|.|+.+++..|. .+|+.|+|++|.|+.++. |..+++|+.
T Consensus 32 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111 (251)
T ss_dssp CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCE
Confidence 45677899999999999876 799999999999999999999997765 799999999999999863 889999999
Q ss_pred EEccCCCCcccCCCC---CCCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccCCC
Q 010557 454 LDLSYNRIFRIGHGN---ILSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSHSA 506 (507)
Q Consensus 454 LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~~~ 506 (507)
|+|++|.|+.++... +..|+.|+|++|.|..+. .+..+.+|....++.|.+..
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 999999999998855 568899999999996653 47888999888888886653
No 8
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.51 E-value=4.5e-13 Score=129.44 Aligned_cols=104 Identities=22% Similarity=0.403 Sum_probs=68.2
Q ss_pred hhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCc
Q 010557 378 IRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRL 451 (507)
Q Consensus 378 l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL 451 (507)
+..++ .|++|++++|.|+.++ .|..+++|++|+|++|.|+.+++..+. .+|+.|+|++|.|+.++. +..+++|
T Consensus 105 ~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 105 FDKLT-NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp TTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcCCc-CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 34443 3577777777777665 366777777777777777777665543 567777777777776643 5667777
Q ss_pred cEEEccCCCCcccCCCC---CCCCCEEEcCCCCC
Q 010557 452 RVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLF 482 (507)
Q Consensus 452 ~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~L 482 (507)
+.|+|++|.|+.++... +++|+.|+|++|.+
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 77777777777666533 44666777777765
No 9
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=9.1e-14 Score=134.85 Aligned_cols=142 Identities=12% Similarity=0.141 Sum_probs=116.6
Q ss_pred cccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCC
Q 010557 360 TRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKI 439 (507)
Q Consensus 360 ~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkL 439 (507)
..+..|.++++.+.....+..++ .|+.|++++|.|+.++.|..+++|++|+|++|.|+.++.... .+|+.|+|++|.|
T Consensus 41 ~~L~~L~l~~n~i~~l~~l~~l~-~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l 118 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLAGMQFFT-NLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNEL 118 (263)
T ss_dssp TTCSEEECTTSCCCCCTTGGGCT-TCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCC
T ss_pred CcCcEEECcCCCcccchHHhhCC-CCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCcc
Confidence 34444556665566556666664 579999999999988878999999999999999999887666 7899999999999
Q ss_pred CCCcCCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCcc
Q 010557 440 NTIEGLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKS 503 (507)
Q Consensus 440 s~Lp~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~ 503 (507)
+.++.+..+++|+.|+|++|+|+.++. ..+.+|+.|+|++|.|..+..+..+.+|....++.|.
T Consensus 119 ~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 119 RDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp SBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEE
T ss_pred CCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCc
Confidence 999889999999999999999998864 4567899999999999777778888887776666654
No 10
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=6.7e-13 Score=122.60 Aligned_cols=120 Identities=19% Similarity=0.332 Sum_probs=59.2
Q ss_pred cCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEc
Q 010557 383 SSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDL 456 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdL 456 (507)
..++.|++++|.|+.++ .|..+++|++|+|++|.|+.+++..|. .+|+.|+|++|.|+.++. |..+++|+.|+|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34455555555555444 244555555555555555555544332 455555555555555432 445555555555
Q ss_pred cCCCCcccCCCC---CCCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCc
Q 010557 457 SYNRIFRIGHGN---ILSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSK 502 (507)
Q Consensus 457 S~N~Is~IP~~~---f~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n 502 (507)
++|.|+.++... +.+|+.|+|++|.|..+. .+..+.+|....++.|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 555555554432 234555555555553321 1344444554444444
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.48 E-value=2.9e-13 Score=127.76 Aligned_cols=125 Identities=19% Similarity=0.293 Sum_probs=97.2
Q ss_pred ccccCCcEEEccCCCCCCCC---CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCcc
Q 010557 380 SLNSSSAVAHIAGIGLKAIP---TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLR 452 (507)
Q Consensus 380 ~Lp~sLt~L~LS~N~Lt~LP---~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~ 452 (507)
.++..++.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+++..|. .+|+.|+|++|.|+.++. |..+++|+
T Consensus 29 ~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 108 (220)
T 2v70_A 29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLK 108 (220)
T ss_dssp CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCC
T ss_pred CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCC
Confidence 34556788888888888773 378888888888888888888886665 788888888888888753 88888888
Q ss_pred EEEccCCCCcccCCCC---CCCCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCccC
Q 010557 453 VLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 453 ~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n~~ 504 (507)
.|+|++|+|+.++... +.+|+.|+|++|.|..+ ..+..+.+|....++.|++
T Consensus 109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 8888888888876544 35778888888888543 5677788888777777754
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.48 E-value=8e-13 Score=127.34 Aligned_cols=142 Identities=16% Similarity=0.270 Sum_probs=111.4
Q ss_pred cccccCCccccccc--hhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECC
Q 010557 362 RSEINLSEEILHAN--SVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLS 435 (507)
Q Consensus 362 ~ldLsLn~~il~~~--s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS 435 (507)
+..|.++++.+..+ ..+..++ .|++|++++|.|+.++ .|..+++|++|+|++|.|+.+++..|. .+|+.|+|+
T Consensus 63 L~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 141 (270)
T 2o6q_A 63 LRLLYLNDNKLQTLPAGIFKELK-NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTSSCT-TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCccCeeChhhhcCCC-CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC
Confidence 33444444444322 2244454 5799999999999887 678899999999999999999887664 789999999
Q ss_pred CCCCCCCcC--CCCCCCccEEEccCCCCcccCCCCC---CCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccC
Q 010557 436 RNKINTIEG--LREMTRLRVLDLSYNRIFRIGHGNI---LSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 436 ~NkLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~~~f---~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~ 504 (507)
+|.|+.++. |..+++|+.|+|++|.|+.++...| .+|+.|+|++|.|..+. .+..+.+|....++.|+.
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 999999864 8889999999999999999887544 58889999999986543 367788888888888764
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.46 E-value=1.4e-12 Score=125.61 Aligned_cols=129 Identities=17% Similarity=0.294 Sum_probs=108.2
Q ss_pred hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCC
Q 010557 377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTR 450 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~s 450 (507)
.+..++ .|++|++++|.|+.++ .|..+++|++|+|++|.|+.+++..|. .+|+.|+|++|.|+.++. |..+++
T Consensus 56 ~~~~l~-~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 134 (270)
T 2o6q_A 56 AFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134 (270)
T ss_dssp SSSSCT-TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred HhcCCC-CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC
Confidence 455554 4799999999999888 468899999999999999999987765 789999999999999864 889999
Q ss_pred ccEEEccCCCCcccCCCC---CCCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccCCC
Q 010557 451 LRVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSHSA 506 (507)
Q Consensus 451 L~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~~~ 506 (507)
|+.|+|++|.|+.++... +++|+.|+|++|.|..+. .+..+.+|....++.|.+..
T Consensus 135 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 999999999999998754 458899999999996543 37788888888888776543
No 14
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.46 E-value=1.1e-12 Score=129.02 Aligned_cols=130 Identities=18% Similarity=0.224 Sum_probs=110.0
Q ss_pred hhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCc-C-CCCCCCcc
Q 010557 376 SVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIE-G-LREMTRLR 452 (507)
Q Consensus 376 s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp-~-L~~L~sL~ 452 (507)
..+..++ .|+.|++++|.|+.++....+++|++|+|++|.|+.++..... .+|+.|+|++|+|+.++ . |..+++|+
T Consensus 49 ~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~ 127 (290)
T 1p9a_G 49 ATLMPYT-RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127 (290)
T ss_dssp GGGTTCT-TCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC
T ss_pred HHhhcCC-CCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCC
Confidence 4566664 5799999999999998668999999999999999998874433 78999999999999986 3 99999999
Q ss_pred EEEccCCCCcccCCCCC---CCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccCCC
Q 010557 453 VLDLSYNRIFRIGHGNI---LSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSHSA 506 (507)
Q Consensus 453 ~LdLS~N~Is~IP~~~f---~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~~~ 506 (507)
.|+|++|+|+.++.+.| .+|+.|+|++|+|..++ .+..+.+|....++.|.+..
T Consensus 128 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence 99999999999998665 48899999999996653 35778888888888886653
No 15
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.45 E-value=5.6e-13 Score=131.69 Aligned_cols=146 Identities=16% Similarity=0.212 Sum_probs=110.4
Q ss_pred hcccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCC
Q 010557 359 LTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNK 438 (507)
Q Consensus 359 L~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~Nk 438 (507)
+..+..|.++++.+.....+..++ .|+.|++++|.|+.++.+..+++|+.|+|++|.|+.+++....++|+.|+|++|.
T Consensus 62 l~~L~~L~L~~n~i~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~ 140 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAPLKNLT-KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ 140 (308)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCC-SCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred cCCCCEEEccCCcCCCChhHccCC-CCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCc
Confidence 334444556665555555566664 4788888888888888788888888888888888887663323788888888888
Q ss_pred CCCCcCCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557 439 INTIEGLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 439 Ls~Lp~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~ 505 (507)
|+.++.+..+++|+.|+|++|.|+.++. ..+++|+.|+|++|.|..+..+..+.+|....+++|.+.
T Consensus 141 l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred cCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccC
Confidence 8888778888888888888888887764 556688888888888877666777888888888777654
No 16
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.44 E-value=4.6e-13 Score=131.50 Aligned_cols=144 Identities=22% Similarity=0.213 Sum_probs=107.9
Q ss_pred cccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCC
Q 010557 360 TRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKI 439 (507)
Q Consensus 360 ~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkL 439 (507)
..+..|.++++.+.....+..++ .|+.|++++|.|+.++.+..+++|++|+|++|.|+.++......+|+.|+|++|.|
T Consensus 68 ~~L~~L~L~~n~l~~~~~l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l 146 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKPLANLK-NLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI 146 (291)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCEEEccCCccCCCcccccCC-CCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcC
Confidence 34444556665555555566654 47888888888888888888888888888888888875432237888888888888
Q ss_pred CCCcCCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccC
Q 010557 440 NTIEGLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 440 s~Lp~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~ 504 (507)
+.++.+..+++|+.|+|++|+|+.++. ..++.|+.|+|++|.|..++.+..+.+|....+++|++
T Consensus 147 ~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 147 TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred CcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence 888778888888888888888887654 45668888888888887777777788877777666643
No 17
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=1.8e-13 Score=126.24 Aligned_cols=145 Identities=16% Similarity=0.145 Sum_probs=115.6
Q ss_pred cccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCC
Q 010557 360 TRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRN 437 (507)
Q Consensus 360 ~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~N 437 (507)
..+..+.++++.+.....+..++ .|+.|++++|.++.++.+..+++|++|+|++|.|+...+..+. ++|+.|+|++|
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~-~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAH-NIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCT-TCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred CCccEEeccCCCccChHHHhcCC-CCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 34444555555555545666665 5899999999998888899999999999999999984444443 78999999999
Q ss_pred CCCC--CcCCCCCCCccEEEccCCC-CcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557 438 KINT--IEGLREMTRLRVLDLSYNR-IFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 438 kLs~--Lp~L~~L~sL~~LdLS~N~-Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~ 505 (507)
.|+. +..+..+++|+.|+|++|. ++.++. ..++.|+.|++++|.|..+..+..+++|....+++|.+.
T Consensus 123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC---
T ss_pred ccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccC
Confidence 9997 3458899999999999998 888874 456789999999999988778888999999888888764
No 18
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=8.5e-13 Score=132.98 Aligned_cols=125 Identities=22% Similarity=0.261 Sum_probs=76.7
Q ss_pred cccCCcEEEccCCCCCCCC--CCC-CCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccE
Q 010557 381 LNSSSAVAHIAGIGLKAIP--TIS-HFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRV 453 (507)
Q Consensus 381 Lp~sLt~L~LS~N~Lt~LP--~L~-~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~ 453 (507)
++..++.|+|++|.|+.++ .|. .+++|+.|+|++|.|+.+++..|. .+|+.|+|++|+|+.++. |..+++|+.
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence 4555666777777777665 344 667777777777777776665554 567777777777766543 666677777
Q ss_pred EEccCCCCcccCCCCC---CCCCEEEcCCCCCCCCC-C-C---CCCCcCCeeeCCCccCC
Q 010557 454 LDLSYNRIFRIGHGNI---LSKPVFWLSFKLFEFLT-I-I---PNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 454 LdLS~N~Is~IP~~~f---~sL~~L~LS~N~Ls~L~-~-L---~nL~~LscnlIs~n~~~ 505 (507)
|+|++|+|+.++...| .+|+.|+|++|.|..++ . + ..+.+|....+++|.+.
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 7777777776654333 36666777777664432 1 1 44566666666665544
No 19
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.43 E-value=7.8e-13 Score=130.67 Aligned_cols=146 Identities=18% Similarity=0.231 Sum_probs=120.8
Q ss_pred hhcccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCC
Q 010557 358 HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRN 437 (507)
Q Consensus 358 qL~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~N 437 (507)
.+..+..|.++++.+.....+..++ .|+.|++++|.|+.++.+..+++|+.|+|++|.|+.+++.....+|+.|+|++|
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 83 NLTKITELELSGNPLKNVSAIAGLQ-SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA 161 (308)
T ss_dssp TCCSCCEEECCSCCCSCCGGGTTCT-TCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred cCCCCCEEEccCCcCCCchhhcCCC-CCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCC
Confidence 3344455666666666666777765 479999999999999889999999999999999999887333378999999999
Q ss_pred CCCCCcCCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccC
Q 010557 438 KINTIEGLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 438 kLs~Lp~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~ 504 (507)
.|+.++.+..+++|+.|+|++|.|+.++. ..++.|+.|+|++|.|..+..+..+.+|....+++|.+
T Consensus 162 ~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 162 QVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred cCCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence 99998879999999999999999998875 56779999999999997766688888888777776654
No 20
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=7.9e-13 Score=122.78 Aligned_cols=103 Identities=23% Similarity=0.318 Sum_probs=93.9
Q ss_pred ccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEE
Q 010557 380 SLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVL 454 (507)
Q Consensus 380 ~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~L 454 (507)
.++..++.|++++|.|+.+| .|..+++|+.|+|++|.|+.+++..|. .+|+.|+|++|.|+.++. |..+++|+.|
T Consensus 28 ~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 28 GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 35678999999999999999 899999999999999999999998776 899999999999999863 9999999999
Q ss_pred EccCCCCcccCCCCC---CCCCEEEcCCCCC
Q 010557 455 DLSYNRIFRIGHGNI---LSKPVFWLSFKLF 482 (507)
Q Consensus 455 dLS~N~Is~IP~~~f---~sL~~L~LS~N~L 482 (507)
+|++|.|+.++...| .+|+.|+|++|.+
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 108 SLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 999999999998654 4788999999987
No 21
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.42 E-value=4.2e-13 Score=131.80 Aligned_cols=117 Identities=27% Similarity=0.284 Sum_probs=60.6
Q ss_pred ccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcC
Q 010557 365 INLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG 444 (507)
Q Consensus 365 LsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~ 444 (507)
|.++.+.+.....+..++ .|+.|++++|.|+.++.+..+++|+.|+|++|.|+.++.....++|+.|+|++|.|+.++.
T Consensus 95 L~l~~n~l~~~~~l~~l~-~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 95 LFLDENKVKDLSSLKDLK-KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp EECCSSCCCCGGGGTTCT-TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG
T ss_pred EECCCCcCCCChhhccCC-CCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh
Confidence 344444444444444443 2455555555555555555555555555555555555221112455555555555555544
Q ss_pred CCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCC
Q 010557 445 LREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLF 482 (507)
Q Consensus 445 L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~L 482 (507)
+..+++|+.|+|++|.|+.++. ..+++|+.|+|++|.+
T Consensus 174 l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence 5555555555555555555543 3344555555555554
No 22
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=5.3e-13 Score=129.47 Aligned_cols=139 Identities=14% Similarity=0.194 Sum_probs=116.3
Q ss_pred cCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCC
Q 010557 366 NLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGL 445 (507)
Q Consensus 366 sLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L 445 (507)
.+....+.....+..++ .|+.|++++|.|+.++.+..+++|+.|+|++|.|+.+++....++|+.|+|++|+|+.++.+
T Consensus 25 ~l~~~~i~~~~~~~~l~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~ 103 (263)
T 1xeu_A 25 NLGKQSVTDLVSQKELS-GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGI 103 (263)
T ss_dssp HHTCSCTTSEECHHHHT-TCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTC
T ss_pred HhcCCCcccccchhhcC-cCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcc
Confidence 33444444444455564 47999999999999999999999999999999999998822227999999999999999886
Q ss_pred CCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCCC
Q 010557 446 REMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHSA 506 (507)
Q Consensus 446 ~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~~ 506 (507)
.. ++|+.|+|++|+|+.++. ..+.+|+.|+|++|.|..+..+..+.+|....++.|.+..
T Consensus 104 ~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 104 PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCB
T ss_pred cc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcc
Confidence 66 999999999999999865 5677999999999999888888899999999998887653
No 23
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=1.8e-12 Score=122.85 Aligned_cols=107 Identities=22% Similarity=0.315 Sum_probs=94.6
Q ss_pred hhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC-CCCCCC
Q 010557 376 SVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG-LREMTR 450 (507)
Q Consensus 376 s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~-L~~L~s 450 (507)
..+..++ .|+.|+|++|.|+.+| .|..+++|++|+|++|.|+.+++..|. .+|+.|+|++|+|+.+|. +..+++
T Consensus 58 ~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 136 (229)
T 3e6j_A 58 GVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTH 136 (229)
T ss_dssp TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTT
T ss_pred HHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCC
Confidence 4466664 5899999999999998 579999999999999999999997765 899999999999999975 889999
Q ss_pred ccEEEccCCCCcccCCCC---CCCCCEEEcCCCCCC
Q 010557 451 LRVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFE 483 (507)
Q Consensus 451 L~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls 483 (507)
|+.|+|++|+|+.++... +.+|+.|+|++|.+.
T Consensus 137 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 999999999999998754 458899999999874
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.40 E-value=5.9e-12 Score=121.49 Aligned_cols=128 Identities=18% Similarity=0.263 Sum_probs=89.0
Q ss_pred hhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCC
Q 010557 376 SVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMT 449 (507)
Q Consensus 376 s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~ 449 (507)
..+..++ .|+.|++++|.|+.++ .|..+++|++|+|++|.|+.+++..+. .+|+.|+|++|.|+.++. +..++
T Consensus 99 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 99 ATFHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177 (285)
T ss_dssp TTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred HHhcCCc-CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence 3444443 4677888888877664 577778888888888888777776553 678888888888777653 77777
Q ss_pred CccEEEccCCCCcccCCC---CCCCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccC
Q 010557 450 RLRVLDLSYNRIFRIGHG---NILSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 450 sL~~LdLS~N~Is~IP~~---~f~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~ 504 (507)
+|+.|+|++|.|+.+... .+++|+.|+|++|.|..+. .+..+.+|....++.|++
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 888888888887776443 3347777888888775543 356677777777776653
No 25
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=1.7e-12 Score=141.46 Aligned_cols=145 Identities=22% Similarity=0.224 Sum_probs=115.1
Q ss_pred hcccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCC
Q 010557 359 LTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNK 438 (507)
Q Consensus 359 L~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~Nk 438 (507)
+..+..|.++.+.+.....+..++ .|+.|+|++|.|+.++.|..|++|+.|+|++|.|..++......+|+.|+|++|.
T Consensus 64 l~~L~~L~Ls~N~l~~~~~l~~l~-~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~ 142 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKPLTNLK-NLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK 142 (605)
T ss_dssp CTTCCEEECTTSCCCCCGGGGGCT-TCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred CCCCCEEEeeCCCCCCChhhccCC-CCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCc
Confidence 334445666666666555566665 4799999999999888889999999999999999987653333789999999999
Q ss_pred CCCCcCCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccC
Q 010557 439 INTIEGLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 439 Ls~Lp~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~ 504 (507)
|+.++.+..|++|+.|+|++|.|+.++. ..+++|+.|+|++|.|..++.+..|.+|....++.|.+
T Consensus 143 l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 143 ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEE
T ss_pred cCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcC
Confidence 9998778899999999999999987644 56678899999999997777788888888877777643
No 26
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=2.1e-12 Score=140.89 Aligned_cols=148 Identities=20% Similarity=0.202 Sum_probs=124.3
Q ss_pred hhcccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCC
Q 010557 358 HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRN 437 (507)
Q Consensus 358 qL~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~N 437 (507)
.|..+..|.++.+.+.....+..++ .|+.|+|++|.|+.++.|..|++|+.|+|++|.|..++......+|+.|+|++|
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLP-NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN 119 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCT-TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTS
T ss_pred cCCCCCEEECcCCCCCCChHHccCC-CCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCC
Confidence 3334445666666666666677775 579999999999998889999999999999999999875443489999999999
Q ss_pred CCCCCcCCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCCC
Q 010557 438 KINTIEGLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHSA 506 (507)
Q Consensus 438 kLs~Lp~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~~ 506 (507)
.|+.++.+..|++|+.|+|++|.|+.++. ..+.+|+.|+|++|.|..+..+..|.+|....++.|.+..
T Consensus 120 ~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 120 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB
T ss_pred CCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC
Confidence 99999889999999999999999998854 5677999999999999776558899999999998887653
No 27
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=4.6e-12 Score=114.35 Aligned_cols=104 Identities=24% Similarity=0.442 Sum_probs=91.7
Q ss_pred ccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccE
Q 010557 380 SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRV 453 (507)
Q Consensus 380 ~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~ 453 (507)
.++..++.|++++|.|+.++ .|..+++|++|+|++|.|+.+++..|. .+|+.|+|++|.|+.++. +..+++|+.
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCE
Confidence 34567899999999999887 578999999999999999999987664 799999999999999864 789999999
Q ss_pred EEccCCCCcccCCCC---CCCCCEEEcCCCCCC
Q 010557 454 LDLSYNRIFRIGHGN---ILSKPVFWLSFKLFE 483 (507)
Q Consensus 454 LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls 483 (507)
|+|++|.|+.++... +.+|+.|+|++|.+.
T Consensus 105 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 105 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 999999999998855 458899999999874
No 28
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.38 E-value=3e-12 Score=131.67 Aligned_cols=142 Identities=18% Similarity=0.202 Sum_probs=109.7
Q ss_pred ccccCCccccc--cchhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCC
Q 010557 363 SEINLSEEILH--ANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSR 436 (507)
Q Consensus 363 ldLsLn~~il~--~~s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~ 436 (507)
..|.++.+.+. ....+..++ .|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.+++..|. .+|+.|+|++
T Consensus 91 ~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 91 EILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp CEEECCSSCCCEECGGGGTTCS-SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CEEECCCCcCCccChhhccCCc-cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence 33444444443 334566665 4799999999999887 588999999999999999999887765 7899999998
Q ss_pred -CCCCCCcC--CCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCC--CCCCCCCCcCCeeeCCCccCC
Q 010557 437 -NKINTIEG--LREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEF--LTIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 437 -NkLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~--L~~L~nL~~LscnlIs~n~~~ 505 (507)
|.+..++. |..+++|+.|+|++|.|+.+|. ..+.+|+.|+|++|.|.. +..+..+.+|....++.|.+.
T Consensus 170 ~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp CTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence 45666653 8889999999999999998886 455688999999999844 467778888888877777553
No 29
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=2.9e-12 Score=120.88 Aligned_cols=105 Identities=22% Similarity=0.341 Sum_probs=93.1
Q ss_pred hhhccccCCcEEEccCCCCCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCC
Q 010557 377 VIRSLNSSSAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTR 450 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~s 450 (507)
.+..++ .|+.|+|++|.|+.+ | .|..+++|++|+|++|.|+.+++..|. .+|+.|+|++|+|+.++ .|..+++
T Consensus 51 ~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 129 (220)
T 2v9t_B 51 AFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129 (220)
T ss_dssp SSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred HhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC
Confidence 455564 579999999999977 5 899999999999999999999998765 79999999999999984 3999999
Q ss_pred ccEEEccCCCCcccCCCCC---CCCCEEEcCCCCC
Q 010557 451 LRVLDLSYNRIFRIGHGNI---LSKPVFWLSFKLF 482 (507)
Q Consensus 451 L~~LdLS~N~Is~IP~~~f---~sL~~L~LS~N~L 482 (507)
|+.|+|++|.|+.++...| .+|+.|+|++|.+
T Consensus 130 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 9999999999999987654 4788999999987
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.38 E-value=3.6e-12 Score=131.47 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=94.3
Q ss_pred hhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCC-CCCCCCcC--CCCC
Q 010557 376 SVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSR-NKINTIEG--LREM 448 (507)
Q Consensus 376 s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~-NkLs~Lp~--L~~L 448 (507)
..+..++ .|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.+++..|. .+|+.|+|++ |.+..++. |..+
T Consensus 117 ~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 195 (452)
T 3zyi_A 117 GAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195 (452)
T ss_dssp TTTTTCT-TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred hhccCcc-cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC
Confidence 4455554 4688888888888776 477788888888888888888776665 6788888887 45666653 7788
Q ss_pred CCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCC--CCCCCCCCcCCeeeCCCccC
Q 010557 449 TRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEF--LTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 449 ~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~--L~~L~nL~~LscnlIs~n~~ 504 (507)
++|+.|+|++|.|+.+|. ..+.+|+.|+|++|.|.. +..+..+.+|....+++|.+
T Consensus 196 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 196 FNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp TTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred CCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence 888888888888888765 445688888888888844 35567777777777776654
No 31
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=3.3e-12 Score=117.85 Aligned_cols=104 Identities=20% Similarity=0.275 Sum_probs=90.7
Q ss_pred ccccCCcEEEccCCCCCCCC-C--CCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCcc
Q 010557 380 SLNSSSAVAHIAGIGLKAIP-T--ISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLR 452 (507)
Q Consensus 380 ~Lp~sLt~L~LS~N~Lt~LP-~--L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~ 452 (507)
.++..++.|++++|.|+.++ . |..+++|++|+|++|.|+.+.+..|. .+|+.|+|++|+|+.++. |..+++|+
T Consensus 26 ~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 26 DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK 105 (192)
T ss_dssp CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 34557899999999999887 3 89999999999999999999887775 789999999999999753 88999999
Q ss_pred EEEccCCCCcccCCC---CCCCCCEEEcCCCCCC
Q 010557 453 VLDLSYNRIFRIGHG---NILSKPVFWLSFKLFE 483 (507)
Q Consensus 453 ~LdLS~N~Is~IP~~---~f~sL~~L~LS~N~Ls 483 (507)
.|+|++|+|+.++.. .+++|+.|+|++|.|.
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999999999988654 4558899999999874
No 32
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.36 E-value=3.2e-12 Score=122.82 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=63.6
Q ss_pred hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCC
Q 010557 377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTR 450 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~s 450 (507)
.+..++ .|++|++++|.|+.++ .|..+++|++|+|++|.|+.+++..+. .+|+.|+|++|.++.++. +..+++
T Consensus 47 ~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 47 SFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (276)
T ss_dssp TTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred Hhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence 344443 3566666666666554 466666666666666666666655443 566666666666666543 666666
Q ss_pred ccEEEccCCCCccc--CC--CCCCCCCEEEcCCCCCC
Q 010557 451 LRVLDLSYNRIFRI--GH--GNILSKPVFWLSFKLFE 483 (507)
Q Consensus 451 L~~LdLS~N~Is~I--P~--~~f~sL~~L~LS~N~Ls 483 (507)
|+.|+|++|.|+.+ |. ..+.+|+.|+|++|.|.
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 66666666666653 22 23456666666666663
No 33
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.36 E-value=7.9e-12 Score=120.59 Aligned_cols=143 Identities=18% Similarity=0.216 Sum_probs=115.4
Q ss_pred ccccCCccccc--cchhhhccccCCcEEEccCCC-CCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECC
Q 010557 363 SEINLSEEILH--ANSVIRSLNSSSAVAHIAGIG-LKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLS 435 (507)
Q Consensus 363 ldLsLn~~il~--~~s~l~~Lp~sLt~L~LS~N~-Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS 435 (507)
..|.+..+.+. ....+..++ .|++|++++|. ++.+ + .|..+++|++|+|++|.|+.+++..+. .+|+.|+|+
T Consensus 59 ~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 137 (285)
T 1ozn_A 59 TILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC
Confidence 34444444343 234566664 57999999997 8887 4 799999999999999999999887665 789999999
Q ss_pred CCCCCCCcC--CCCCCCccEEEccCCCCcccCCCC---CCCCCEEEcCCCCCCC--CCCCCCCCcCCeeeCCCccCCC
Q 010557 436 RNKINTIEG--LREMTRLRVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFEF--LTIIPNCKRLSCNLYNSKSHSA 506 (507)
Q Consensus 436 ~NkLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls~--L~~L~nL~~LscnlIs~n~~~~ 506 (507)
+|.|+.++. +..+++|+.|+|++|.|+.++... +.+|+.|+|++|.|.. +..+..+++|....++.|.+..
T Consensus 138 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence 999999864 889999999999999999998754 4588999999999944 5678888899988888886643
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.36 E-value=8.6e-12 Score=128.27 Aligned_cols=119 Identities=19% Similarity=0.190 Sum_probs=75.9
Q ss_pred CcEEEccC-CCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCc--CCCCCCCccEEEccCC
Q 010557 385 SAVAHIAG-IGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYN 459 (507)
Q Consensus 385 Lt~L~LS~-N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp--~L~~L~sL~~LdLS~N 459 (507)
|+.|++++ |.+..++ .|..+++|++|+|++|.|+.++......+|+.|+|++|.|+.++ .|..+++|+.|+|++|
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence 56666666 3445554 46666777777777777776665333356777777777777652 2667777777777777
Q ss_pred CCcccCCCCC---CCCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCcc
Q 010557 460 RIFRIGHGNI---LSKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSKS 503 (507)
Q Consensus 460 ~Is~IP~~~f---~sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n~ 503 (507)
+|+.++...| ++|+.|+|++|.|..+ ..+..+.+|....++.|+
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 7777665433 4667777777777443 235566666666666665
No 35
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.34 E-value=1.1e-11 Score=114.33 Aligned_cols=104 Identities=25% Similarity=0.438 Sum_probs=89.9
Q ss_pred hhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCc
Q 010557 378 IRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRL 451 (507)
Q Consensus 378 l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL 451 (507)
+..++ .|++|++++|.|+.++ .|..+++|++|+|++|.|+.+++..+. .+|+.|+|++|.|+.++. |..+++|
T Consensus 48 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 48 FDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126 (208)
T ss_dssp TTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcccc-cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC
Confidence 45554 5799999999999887 478999999999999999999887664 789999999999999864 7899999
Q ss_pred cEEEccCCCCcccCCCC---CCCCCEEEcCCCCC
Q 010557 452 RVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLF 482 (507)
Q Consensus 452 ~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~L 482 (507)
+.|+|++|.|+.++... +.+|+.|+|++|.+
T Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 99999999999988754 45888999999976
No 36
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.34 E-value=1.8e-12 Score=130.67 Aligned_cols=105 Identities=23% Similarity=0.230 Sum_probs=92.9
Q ss_pred ccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCCccE
Q 010557 380 SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRV 453 (507)
Q Consensus 380 ~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~sL~~ 453 (507)
.++ .|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.+++..|. .+|+.|+|++|.|+.++ .|..+++|+.
T Consensus 62 ~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 62 RLT-NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140 (361)
T ss_dssp CCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccc-ccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE
Confidence 454 5799999999999887 699999999999999999999987765 79999999999999974 3999999999
Q ss_pred EEccCCCCcccCCCC------CCCCCEEEcCCCCCCCC
Q 010557 454 LDLSYNRIFRIGHGN------ILSKPVFWLSFKLFEFL 485 (507)
Q Consensus 454 LdLS~N~Is~IP~~~------f~sL~~L~LS~N~Ls~L 485 (507)
|+|++|+|+.+|... +.+|+.|+|++|.|..+
T Consensus 141 L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp EECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred EECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 999999999998754 56899999999999654
No 37
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=1.5e-12 Score=116.32 Aligned_cols=123 Identities=16% Similarity=0.101 Sum_probs=79.3
Q ss_pred cccCCcEEEccCCCCC--CCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCC-CcC-CCCCCCccEEE
Q 010557 381 LNSSSAVAHIAGIGLK--AIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT-IEG-LREMTRLRVLD 455 (507)
Q Consensus 381 Lp~sLt~L~LS~N~Lt--~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~-Lp~-L~~L~sL~~Ld 455 (507)
.+..++.|++++|.|+ .+| .+..+++|++|+|++|.|+.+.......+|+.|+|++|.|+. ++. +..+++|+.|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3455677777777777 676 567777777777777777776211112677777777777777 454 44577777777
Q ss_pred ccCCCCcccCC----CCCCCCCEEEcCCCCCCCCC-----CCCCCCcCCeeeCCCcc
Q 010557 456 LSYNRIFRIGH----GNILSKPVFWLSFKLFEFLT-----IIPNCKRLSCNLYNSKS 503 (507)
Q Consensus 456 LS~N~Is~IP~----~~f~sL~~L~LS~N~Ls~L~-----~L~nL~~LscnlIs~n~ 503 (507)
|++|.|+.++. ..++.|+.|+|++|.|..+. .+..+++|....+..+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 77777777652 34557777777777774433 35555565555554443
No 38
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.34 E-value=5e-12 Score=119.30 Aligned_cols=106 Identities=19% Similarity=0.277 Sum_probs=92.8
Q ss_pred hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc-C-CCCCCC
Q 010557 377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE-G-LREMTR 450 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp-~-L~~L~s 450 (507)
.+..++ .|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.+++..|. .+|+.|+|++|.|+.++ . |..+++
T Consensus 52 ~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 52 IFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130 (220)
T ss_dssp CGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred hhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence 356665 4799999999999886 799999999999999999999997665 79999999999999984 3 999999
Q ss_pred ccEEEccCCCCcccCCCC---CCCCCEEEcCCCCCC
Q 010557 451 LRVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFE 483 (507)
Q Consensus 451 L~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls 483 (507)
|+.|+|++|+|+.++... +.+|+.|+|++|.|.
T Consensus 131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999999999999986654 458889999999873
No 39
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.34 E-value=1e-11 Score=115.28 Aligned_cols=116 Identities=26% Similarity=0.337 Sum_probs=99.2
Q ss_pred cEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCC
Q 010557 386 AVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNR 460 (507)
Q Consensus 386 t~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~ 460 (507)
+.+++++|.|+.+| .+. .+|+.|+|++|.|+.++. .|. .+|+.|+|++|.|+.++. |..+++|+.|+|++|+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 57899999999999 553 699999999999999884 343 799999999999999864 9999999999999999
Q ss_pred CcccCCCCC---CCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccC
Q 010557 461 IFRIGHGNI---LSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 461 Is~IP~~~f---~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~ 504 (507)
|+.++...| .+|+.|+|++|.|..+. .+..+.+|....++.|+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 999987654 58899999999996543 477888888888888764
No 40
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=1.7e-11 Score=113.09 Aligned_cols=118 Identities=20% Similarity=0.231 Sum_probs=101.6
Q ss_pred cEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCC-CCC--CCCcEEECCCCCCCCC-cC-CCCCCCccEEEccCC
Q 010557 386 AVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTG-SMP--KGLHTLNLSRNKINTI-EG-LREMTRLRVLDLSYN 459 (507)
Q Consensus 386 t~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~-sf~--~sL~~LdLS~NkLs~L-p~-L~~L~sL~~LdLS~N 459 (507)
+.+++++|.|+.+| .+.. +|+.|+|++|.|+.+++. .+. .+|+.|+|++|.|+++ +. |..+++|+.|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 67899999999999 5544 999999999999999885 343 7999999999999997 43 999999999999999
Q ss_pred CCcccCCCC---CCCCCEEEcCCCCCCC--CCCCCCCCcCCeeeCCCccCC
Q 010557 460 RIFRIGHGN---ILSKPVFWLSFKLFEF--LTIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 460 ~Is~IP~~~---f~sL~~L~LS~N~Ls~--L~~L~nL~~LscnlIs~n~~~ 505 (507)
+|+.++... +.+|+.|+|++|.|.. +..+..+.+|....++.|++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999998754 4688999999999954 467888889988888888653
No 41
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.33 E-value=2.4e-11 Score=109.66 Aligned_cols=119 Identities=20% Similarity=0.296 Sum_probs=102.2
Q ss_pred CcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCC
Q 010557 385 SAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYN 459 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N 459 (507)
.+.+++++|+++.+| .+ .++|+.|+|++|.|+.+++..+. .+|+.|+|++|.|+.++. |..+++|+.|+|++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 367899999999998 44 37999999999999999987764 799999999999999864 789999999999999
Q ss_pred CCcccCCCC---CCCCCEEEcCCCCCCCCCC--CCCCCcCCeeeCCCccCC
Q 010557 460 RIFRIGHGN---ILSKPVFWLSFKLFEFLTI--IPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 460 ~Is~IP~~~---f~sL~~L~LS~N~Ls~L~~--L~nL~~LscnlIs~n~~~ 505 (507)
.|+.++... +.+|+.|+|++|.|..+.. +..+.+|....++.|++.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 999998754 4689999999999965433 577888999888888754
No 42
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.33 E-value=1.7e-11 Score=128.23 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=104.2
Q ss_pred ccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEccCC
Q 010557 380 SLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYN 459 (507)
Q Consensus 380 ~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N 459 (507)
.++..|++|++++|.|+.+|.|..+++|++|++++|.|+.++... .+|+.|+|++|.|+++|.+..+++|+.|++++|
T Consensus 128 ~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~--~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 128 DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP--PSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp SCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc--ccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence 455678999999999999998999999999999999999877543 589999999999999988999999999999999
Q ss_pred CCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCCC
Q 010557 460 RIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHSA 506 (507)
Q Consensus 460 ~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~~ 506 (507)
.|+.+|.. ..+|+.|++++|.+..++.++.+++|....++.|.+..
T Consensus 206 ~l~~l~~~-~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 206 SLKKLPDL-PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CCSSCCCC-CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred cCCcCCCC-cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc
Confidence 99987753 35888899999888776678888888888887776543
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.32 E-value=1.6e-11 Score=126.73 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=71.5
Q ss_pred CcEEEccC-CCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCC-cC-CCCCCCccEEEccCC
Q 010557 385 SAVAHIAG-IGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI-EG-LREMTRLRVLDLSYN 459 (507)
Q Consensus 385 Lt~L~LS~-N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~L-p~-L~~L~sL~~LdLS~N 459 (507)
|+.|++++ |.+..++ .|..+++|++|+|++|.|+.++......+|+.|+|++|.|+.+ +. |..+++|+.|+|++|
T Consensus 173 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred ccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 45555555 3444444 4566666666666666666665433335666666666666665 22 666667777777777
Q ss_pred CCcccCCCC---CCCCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCcc
Q 010557 460 RIFRIGHGN---ILSKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSKS 503 (507)
Q Consensus 460 ~Is~IP~~~---f~sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n~ 503 (507)
+|+.++... +++|+.|+|++|.|..+ ..+..+.+|....++.|+
T Consensus 253 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 776665533 34666777777777443 234556666666666664
No 44
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=1.1e-11 Score=112.54 Aligned_cols=95 Identities=23% Similarity=0.403 Sum_probs=53.1
Q ss_pred cEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCC
Q 010557 386 AVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNR 460 (507)
Q Consensus 386 t~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~ 460 (507)
+.+++++|.|+.+| .+ .++|++|+|++|.|+.+++..|. .+|+.|+|++|+|+.++. |..+++|+.|+|++|+
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 45556666666555 33 25566666666666666554443 456666666666665543 4556666666666666
Q ss_pred CcccCCCC---CCCCCEEEcCCCCC
Q 010557 461 IFRIGHGN---ILSKPVFWLSFKLF 482 (507)
Q Consensus 461 Is~IP~~~---f~sL~~L~LS~N~L 482 (507)
|+.++... +.+|+.|+|++|.|
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 66555432 23555566666654
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.31 E-value=5.8e-12 Score=125.69 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=49.6
Q ss_pred CCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcC-CCCCCCccEEEccCCCCcc-cCC--CCCCCCCEEEcC
Q 010557 404 FSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIFR-IGH--GNILSKPVFWLS 478 (507)
Q Consensus 404 L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~N~Is~-IP~--~~f~sL~~L~LS 478 (507)
+++|++|+|++|.|+.++..... .+|+.|+|++|.|++++. +..+++|+.|+|++|.+.. +|. ..+++|+.|+|+
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence 55555555555555544432111 455555555555555532 5555555555555555442 332 233455556666
Q ss_pred CCCC--CCCCCCCCCCcCCeeeCCCc
Q 010557 479 FKLF--EFLTIIPNCKRLSCNLYNSK 502 (507)
Q Consensus 479 ~N~L--s~L~~L~nL~~LscnlIs~n 502 (507)
+|.+ ..+..+.++++|....+++|
T Consensus 262 ~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 262 DCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp TCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred CCCchhhcchhhhcCCCCCEEeCCCC
Confidence 5544 22344555555555555554
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.30 E-value=6.6e-12 Score=131.45 Aligned_cols=108 Identities=18% Similarity=0.224 Sum_probs=90.2
Q ss_pred hhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCC
Q 010557 376 SVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMT 449 (507)
Q Consensus 376 s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~ 449 (507)
..|..++. |++|+|++|.|+.|+ .|..+++|++|+|++|.|+.+++..|. .+|+.|+|++|+|+.++. |+.|+
T Consensus 70 ~~f~~l~~-L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 70 YSFFSFPE-LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 148 (635)
T ss_dssp TTTTTCTT-CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred HHHhCCCC-CCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence 45677754 799999999999886 689999999999999999999887665 789999999999999864 88999
Q ss_pred CccEEEccCCCCcccCC----CCCCCCCEEEcCCCCCCC
Q 010557 450 RLRVLDLSYNRIFRIGH----GNILSKPVFWLSFKLFEF 484 (507)
Q Consensus 450 sL~~LdLS~N~Is~IP~----~~f~sL~~L~LS~N~Ls~ 484 (507)
+|+.|+|++|.|+.++. ..+..|+.|+|++|.|..
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 99999999999986543 345688999999998843
No 47
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=8.1e-12 Score=115.09 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=106.2
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCC--CcCCCCCCCccEEEccCCCC
Q 010557 384 SSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT--IEGLREMTRLRVLDLSYNRI 461 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~--Lp~L~~L~sL~~LdLS~N~I 461 (507)
.|+.|++++|.|+.+|.+..+++|++|+|++|.++.++.....++|+.|+|++|.|+. +..+..+++|+.|+|++|.|
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence 4799999999999999999999999999999998887643334799999999999997 45699999999999999999
Q ss_pred ccc-CC--CCCCCCCEEEcCCCC-CCCCCCCCCCCcCCeeeCCCccCCC
Q 010557 462 FRI-GH--GNILSKPVFWLSFKL-FEFLTIIPNCKRLSCNLYNSKSHSA 506 (507)
Q Consensus 462 s~I-P~--~~f~sL~~L~LS~N~-Ls~L~~L~nL~~LscnlIs~n~~~~ 506 (507)
+.. +. ..++.|+.|+|++|. +..++.+..+++|....+++|.+..
T Consensus 125 ~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 125 DDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp BGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC
T ss_pred CcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC
Confidence 963 22 567899999999998 8777788889999998888887654
No 48
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.30 E-value=8.9e-12 Score=122.81 Aligned_cols=143 Identities=14% Similarity=0.179 Sum_probs=116.0
Q ss_pred cccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCC
Q 010557 362 RSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT 441 (507)
Q Consensus 362 ~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~ 441 (507)
+..+.+..+.+.....+..++ .|+.|++++|.++.++.+..+++|+.|+|++|.|+.++.....++|+.|+|++|.|+.
T Consensus 201 L~~L~l~~n~l~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 201 LHYFTAYVNQITDITPVANMT-RLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp CCEEECCSSCCCCCGGGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred cceeecccCCCCCCchhhcCC-cCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCC
Confidence 334455555555545465554 5799999999999888889999999999999999998543333799999999999999
Q ss_pred CcCCCCCCCccEEEccCCCCcccCC---CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557 442 IEGLREMTRLRVLDLSYNRIFRIGH---GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 442 Lp~L~~L~sL~~LdLS~N~Is~IP~---~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~ 505 (507)
++.+..+++|+.|+|++|.|+.++. ..+++|+.|+|++|.+..+..+..+..|....+++|.+.
T Consensus 280 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp CGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred ChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence 9889999999999999999997664 457799999999999977666888999999999988765
No 49
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=2.1e-12 Score=117.03 Aligned_cols=98 Identities=17% Similarity=0.231 Sum_probs=46.3
Q ss_pred CcEEEccCCCCCCCCCCCCCC-CCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCC
Q 010557 385 SAVAHIAGIGLKAIPTISHFS-SLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRI 461 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP~L~~L~-sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~I 461 (507)
++.|++++|.|+.++.+..+. +|++|+|++|.|+.+.......+|+.|+|++|.|+.++. +..+++|+.|+|++|.|
T Consensus 21 L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred ceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC
Confidence 455555555555544333333 555555555555554211111445555555555555432 24455555555555555
Q ss_pred cccCC----CCCCCCCEEEcCCCCC
Q 010557 462 FRIGH----GNILSKPVFWLSFKLF 482 (507)
Q Consensus 462 s~IP~----~~f~sL~~L~LS~N~L 482 (507)
+.+|. ..+++|+.|+|++|.|
T Consensus 101 ~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 101 VELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp CCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred CcchhhHhhhcCCCCCEEEecCCCC
Confidence 54443 2233455555555555
No 50
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.6e-11 Score=112.33 Aligned_cols=94 Identities=26% Similarity=0.392 Sum_probs=46.4
Q ss_pred EEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCC
Q 010557 387 VAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRI 461 (507)
Q Consensus 387 ~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~I 461 (507)
.+++++|.|+.+| .+. ++|+.|+|++|.|+.+++..|. .+|+.|+|++|+|+.++. |..+++|+.|+|++|+|
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 4455555555555 332 4555555555555555444332 445555555555555432 44555555555555555
Q ss_pred cccCCCC---CCCCCEEEcCCCCC
Q 010557 462 FRIGHGN---ILSKPVFWLSFKLF 482 (507)
Q Consensus 462 s~IP~~~---f~sL~~L~LS~N~L 482 (507)
+.++... +.+|+.|+|++|.|
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ceeCHHHhccccCCCEEEeCCCCc
Confidence 5554432 23444555555544
No 51
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=3.6e-12 Score=111.69 Aligned_cols=118 Identities=17% Similarity=0.066 Sum_probs=94.0
Q ss_pred ccCCcEEEccCCCCC--CCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCC-CcC-CCCCCCccEEEc
Q 010557 382 NSSSAVAHIAGIGLK--AIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT-IEG-LREMTRLRVLDL 456 (507)
Q Consensus 382 p~sLt~L~LS~N~Lt--~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~-Lp~-L~~L~sL~~LdL 456 (507)
+..++.|++++|.++ .+| .+..+++|++|+|++|.|+.+......++|+.|+|++|.|+. +|. +..+++|+.|+|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 456899999999998 788 779999999999999999998222222789999999999998 665 566899999999
Q ss_pred cCCCCcccC--C--CCCCCCCEEEcCCCCCCCCCC-----CCCCCcCCeeeC
Q 010557 457 SYNRIFRIG--H--GNILSKPVFWLSFKLFEFLTI-----IPNCKRLSCNLY 499 (507)
Q Consensus 457 S~N~Is~IP--~--~~f~sL~~L~LS~N~Ls~L~~-----L~nL~~LscnlI 499 (507)
++|.|+.++ . ..++.|+.|++++|.|..+.. +..+++|....+
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 999999865 2 456789999999999865543 555666665444
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.29 E-value=2e-11 Score=129.26 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=48.2
Q ss_pred CcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCCccEEEccC
Q 010557 385 SAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSY 458 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~sL~~LdLS~ 458 (507)
|++|++++|.|+.++ .|..+++|++|+|++|.|+.+++..|. .+|++|+|++|.|+.++ .+..+++|+.|+|++
T Consensus 58 L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 137 (606)
T 3vq2_A 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137 (606)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCS
T ss_pred CcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCC
Confidence 455555555555442 445555555555555555555444332 44555555555555543 245555555555555
Q ss_pred CCCcc--cCC--CCCCCCCEEEcCCCCC
Q 010557 459 NRIFR--IGH--GNILSKPVFWLSFKLF 482 (507)
Q Consensus 459 N~Is~--IP~--~~f~sL~~L~LS~N~L 482 (507)
|.|+. +|. +.+.+|+.|+|++|.+
T Consensus 138 n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp SCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred CcccceechHhHhhcCCCCEEEccCCcc
Confidence 55543 222 2334555555555554
No 53
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.29 E-value=2.4e-12 Score=126.40 Aligned_cols=121 Identities=13% Similarity=0.081 Sum_probs=83.6
Q ss_pred CcEEEccCCCCCC---CC---CCCCCCCCCEEEccCCCCCCcCCC---CC--CCCCcEEECCCCCCCCC-c-CCCCC---
Q 010557 385 SAVAHIAGIGLKA---IP---TISHFSSLRSVNLSNNFIVHIPTG---SM--PKGLHTLNLSRNKINTI-E-GLREM--- 448 (507)
Q Consensus 385 Lt~L~LS~N~Lt~---LP---~L~~L~sL~~LdLS~N~Is~Ipp~---sf--~~sL~~LdLS~NkLs~L-p-~L~~L--- 448 (507)
|++|++++|.+.. ++ .+..+++|++|+|++|.|+.++.. .+ ..+|+.|+|++|.|+.+ | .+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 4555555555432 21 234455555555555555443331 11 16788888888888886 4 35554
Q ss_pred CCccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557 449 TRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 449 ~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~ 505 (507)
++|+.|+|++|+|+.||...+++|+.|+|++|.|..++.+..+++|....++.|++.
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence 689999999999999988888899999999999977666788888888888888764
No 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.29 E-value=2.1e-11 Score=125.82 Aligned_cols=128 Identities=19% Similarity=0.229 Sum_probs=95.0
Q ss_pred hhhhccccCCcEEEccCCCCCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCC
Q 010557 376 SVIRSLNSSSAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMT 449 (507)
Q Consensus 376 s~l~~Lp~sLt~L~LS~N~Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~ 449 (507)
..+..++ .|+.|+|++|.|+.+ | .|..+++|++|+|++|.|+.+++..|. .+|+.|+|++|.|+.+. .|..++
T Consensus 50 ~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 50 DEFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hHccCCC-CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence 4455554 468888888888866 4 788888888888888888888877654 78888888888888763 378888
Q ss_pred CccEEEccCCCCcccCCCC---CCCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccC
Q 010557 450 RLRVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 450 sL~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~ 504 (507)
+|+.|+|++|.|+.++... +.+|+.|+|++|.+..+. .+.++.+|....++.+.+
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 8888888888888876643 447788888888885543 355666666655555543
No 55
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=2.9e-12 Score=116.04 Aligned_cols=119 Identities=15% Similarity=0.149 Sum_probs=100.6
Q ss_pred cccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC
Q 010557 364 EINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT 441 (507)
Q Consensus 364 dLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~ 441 (507)
.|.+.++.+.....+..+...|+.|++++|.|+.++.|..+++|++|+|++|.|+.+++..+. ++|+.|+|++|.|+.
T Consensus 23 ~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 102 (176)
T 1a9n_A 23 ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE 102 (176)
T ss_dssp EEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC
T ss_pred EEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc
Confidence 344555555555566666667999999999999889999999999999999999999876643 799999999999999
Q ss_pred CcC---CCCCCCccEEEccCCCCcccCC------CCCCCCCEEEcCCCCC
Q 010557 442 IEG---LREMTRLRVLDLSYNRIFRIGH------GNILSKPVFWLSFKLF 482 (507)
Q Consensus 442 Lp~---L~~L~sL~~LdLS~N~Is~IP~------~~f~sL~~L~LS~N~L 482 (507)
++. +..+++|+.|+|++|.|+.+|. ..++.|+.|+++.|.+
T Consensus 103 ~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 103 LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 864 8889999999999999998886 3567899999998876
No 56
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.28 E-value=3.6e-11 Score=130.62 Aligned_cols=129 Identities=20% Similarity=0.256 Sum_probs=91.6
Q ss_pred ccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcC
Q 010557 365 INLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG 444 (507)
Q Consensus 365 LsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~ 444 (507)
|.++.+.+..+. .....|+.|++++|.|+.||.|.. +|++|+|++|.|+.|+. ...+|+.|+|++|.|+++|.
T Consensus 85 L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~ 157 (571)
T 3cvr_A 85 LEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE 157 (571)
T ss_dssp EECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC
T ss_pred EECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC
Confidence 344444444333 344567888888888888876443 88888888888888777 34688888888888888876
Q ss_pred CCCCCCccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcC-------CeeeCCCccCC
Q 010557 445 LREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRL-------SCNLYNSKSHS 505 (507)
Q Consensus 445 L~~L~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~L-------scnlIs~n~~~ 505 (507)
.+++|+.|+|++|.|+.||. ...+|+.|+|++|.|+.++.+.. +| ....+++|.+.
T Consensus 158 --~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 158 --LPTSLEVLSVRNNQLTFLPE-LPESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp --CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCC
T ss_pred --cCCCcCEEECCCCCCCCcch-hhCCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcce
Confidence 56788888888888888887 44688888888888866554443 55 66666666554
No 57
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.28 E-value=4.4e-12 Score=119.56 Aligned_cols=125 Identities=13% Similarity=0.140 Sum_probs=100.4
Q ss_pred hhhccccCCcEEEccCCC-CCCCC--CCCCCCCCCEEEccC-CCCCCcCCCCCC--CCCcEEECCCCCCCCCcCCCCCCC
Q 010557 377 VIRSLNSSSAVAHIAGIG-LKAIP--TISHFSSLRSVNLSN-NFIVHIPTGSMP--KGLHTLNLSRNKINTIEGLREMTR 450 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~-Lt~LP--~L~~L~sL~~LdLS~-N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~L~~L~s 450 (507)
.+..++ .|+.|++++|. ++.++ .|..+++|++|+|++ |.|+.+++..|. .+|+.|+|++|.|+.+|.+..+++
T Consensus 50 ~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~ 128 (239)
T 2xwt_C 50 AFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128 (239)
T ss_dssp TTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCB
T ss_pred HccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccc
Confidence 455554 47999999997 98887 688999999999998 999999987764 789999999999999988888888
Q ss_pred cc---EEEccCC-CCcccCCCCCC---CCC-EEEcCCCCCCCC-CCCCCCCcCCeeeCCCc
Q 010557 451 LR---VLDLSYN-RIFRIGHGNIL---SKP-VFWLSFKLFEFL-TIIPNCKRLSCNLYNSK 502 (507)
Q Consensus 451 L~---~LdLS~N-~Is~IP~~~f~---sL~-~L~LS~N~Ls~L-~~L~nL~~LscnlIs~n 502 (507)
|+ .|+|++| .|+.++...|. .|+ .|++++|.|..+ .......+|....++.|
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 88 9999999 99999886554 677 899999998543 22223356766666666
No 58
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.28 E-value=2.8e-11 Score=121.80 Aligned_cols=107 Identities=22% Similarity=0.272 Sum_probs=69.2
Q ss_pred hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCC
Q 010557 377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTR 450 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~s 450 (507)
.+..++ .|++|++++|.|+.++ .|..+++|++|+|++|.|+.+++..|. ++|+.|+|++|.|+.++. +..+++
T Consensus 88 ~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 166 (390)
T 3o6n_A 88 AFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166 (390)
T ss_dssp TTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT
T ss_pred hccCCC-CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC
Confidence 344443 3567777777776554 466677777777777777766665543 567777777777766532 666677
Q ss_pred ccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCC
Q 010557 451 LRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEF 484 (507)
Q Consensus 451 L~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~ 484 (507)
|+.|+|++|.|+.++...++.|+.|++++|.+..
T Consensus 167 L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 167 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred CCEEECCCCcCCccccccccccceeecccccccc
Confidence 7777777777776666666667777776666644
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.28 E-value=3.5e-11 Score=125.54 Aligned_cols=139 Identities=18% Similarity=0.194 Sum_probs=111.2
Q ss_pred cccccCCccccccch----hhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCC
Q 010557 362 RSEINLSEEILHANS----VIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSR 436 (507)
Q Consensus 362 ~ldLsLn~~il~~~s----~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~ 436 (507)
+..|.++.+.+.... .+..++ .|++|++++|.|+.+| .+..+++|++|+|++|.|+.++...+ .+|+.|+|++
T Consensus 363 L~~L~Ls~N~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~-~~L~~L~Ls~ 440 (549)
T 2z81_A 363 LQTLVLSQNHLRSMQKTGEILLTLK-NLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP-QTLEVLDVSN 440 (549)
T ss_dssp CCEEECTTSCCCCHHHHHHHGGGCT-TCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC-TTCSEEECCS
T ss_pred CcEEEccCCcccccccchhhhhcCC-CCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc-CCceEEECCC
Confidence 334555555554332 355554 5799999999999999 88899999999999999998876544 6899999999
Q ss_pred CCCCCCcCCCCCCCccEEEccCCCCcccCCC-CCCCCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCccC
Q 010557 437 NKINTIEGLREMTRLRVLDLSYNRIFRIGHG-NILSKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 437 NkLs~Lp~L~~L~sL~~LdLS~N~Is~IP~~-~f~sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n~~ 504 (507)
|+|++++ ..+++|+.|+|++|+|+.||.. .++.|+.|+|++|.|..+ ..+..+.+|....++.|+.
T Consensus 441 N~l~~~~--~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 441 NNLDSFS--LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp SCCSCCC--CCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred CChhhhc--ccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 9999874 5788999999999999999873 466999999999999554 3478888888888888865
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.27 E-value=7.2e-11 Score=123.61 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=61.9
Q ss_pred CcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEccCC-CCcc
Q 010557 385 SAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYN-RIFR 463 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N-~Is~ 463 (507)
|++|++++|.|+.++ +..+++|++|+|++|.|+.++-.. .++|+.|+|++|.|++++ +..+++|+.|+|++| .+..
T Consensus 87 L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~~~~-l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~ 163 (457)
T 3bz5_A 87 LTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLDVSQ-NPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITK 163 (457)
T ss_dssp CSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCCCTT-CTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCC
T ss_pred CCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeecCCC-CCcCCEEECCCCccceec-cccCCcCCEEECCCCCcccc
Confidence 455555555555443 445555555555555555543111 145555555555555542 445555555555555 3444
Q ss_pred cCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557 464 IGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 464 IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~ 505 (507)
++...+..|+.|++++|.|..++ +..+..|....++.|.+.
T Consensus 164 ~~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 164 LDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp CCCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCS
T ss_pred cccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCC
Confidence 44445556666666666665554 556666666666555443
No 61
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.26 E-value=7.1e-12 Score=118.12 Aligned_cols=129 Identities=13% Similarity=0.095 Sum_probs=107.0
Q ss_pred hhhccccCCcEEEccC-CCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCCCCCc---EEECCCC-CCCCCcC--CCC
Q 010557 377 VIRSLNSSSAVAHIAG-IGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLH---TLNLSRN-KINTIEG--LRE 447 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~-N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~---~LdLS~N-kLs~Lp~--L~~ 447 (507)
.+..++ .|++|++++ |.|+.++ .|..+++|++|+|++|.|+.++......+|+ .|+|++| .|+.++. |..
T Consensus 75 ~f~~l~-~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 75 SFYNLS-KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp TEESCT-TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred HcCCCc-CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccc
Confidence 456665 589999999 9999887 6889999999999999999988722226677 9999999 9999864 899
Q ss_pred CCCcc-EEEccCCCCcccCCCCCC--CCCEEEcCCCC-CCCC--CCCCCC-CcCCeeeCCCccCCC
Q 010557 448 MTRLR-VLDLSYNRIFRIGHGNIL--SKPVFWLSFKL-FEFL--TIIPNC-KRLSCNLYNSKSHSA 506 (507)
Q Consensus 448 L~sL~-~LdLS~N~Is~IP~~~f~--sL~~L~LS~N~-Ls~L--~~L~nL-~~LscnlIs~n~~~~ 506 (507)
+++|+ .|+|++|.|+.||...|. +|+.|+|++|. +..+ ..+..+ .+|....++.|.+..
T Consensus 154 l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp TBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred hhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 99999 999999999999987665 67889999995 8553 456777 888888888876654
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.26 E-value=2e-11 Score=127.53 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=64.8
Q ss_pred hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCC
Q 010557 377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTR 450 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~s 450 (507)
.+..++ .|++|++++|.|+.++ .|..+++|++|+|++|.|+.+++..|. .+|+.|+|++|.|+.++. +..+++
T Consensus 47 ~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 47 SFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (570)
T ss_dssp TTTTCS-SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred HhhCCC-CceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccc
Confidence 344443 3566666666666554 466666666666666666666655544 566666666666666543 666666
Q ss_pred ccEEEccCCCCccc--CC--CCCCCCCEEEcCCCCCC
Q 010557 451 LRVLDLSYNRIFRI--GH--GNILSKPVFWLSFKLFE 483 (507)
Q Consensus 451 L~~LdLS~N~Is~I--P~--~~f~sL~~L~LS~N~Ls 483 (507)
|+.|+|++|.|+.+ |. ..+.+|+.|++++|.+.
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 66666666666643 32 23456666666666663
No 63
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.26 E-value=2.6e-11 Score=128.29 Aligned_cols=119 Identities=17% Similarity=0.180 Sum_probs=74.8
Q ss_pred hhhhccccCCcEEEccCCCCCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCC
Q 010557 376 SVIRSLNSSSAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMT 449 (507)
Q Consensus 376 s~l~~Lp~sLt~L~LS~N~Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~ 449 (507)
..+..++ .|++|++++|.|+.+ | .|..+++|++|+|++|.|+.+++..+. .+|+.|+|++|.|+.++ .+..++
T Consensus 51 ~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 51 TTFSRLI-NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTSTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred hHhccCc-cceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 3455554 357777777777755 3 577777777777777777776665554 66777777777777752 366777
Q ss_pred CccEEEccCCCCcccCC---CCCCCCCEEEcCCCCCCCC--CCCCCCCcCC
Q 010557 450 RLRVLDLSYNRIFRIGH---GNILSKPVFWLSFKLFEFL--TIIPNCKRLS 495 (507)
Q Consensus 450 sL~~LdLS~N~Is~IP~---~~f~sL~~L~LS~N~Ls~L--~~L~nL~~Ls 495 (507)
+|+.|+|++|.|+.++. ..+.+|+.|+|++|.+..+ ..++.+..|.
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 77777777777776532 1244667777777776432 2234444444
No 64
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.25 E-value=3.2e-11 Score=124.90 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=62.5
Q ss_pred CcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEccCCCCccc
Q 010557 385 SAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI 464 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N~Is~I 464 (507)
|+.|++++|.++.++.+..+++|+.|+|++|.+..+++....++|+.|+|++|.+++++.+..+++|+.|+|++|.|+.+
T Consensus 267 L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 267 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp CSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred CCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc
Confidence 45555555555555445555555555555555555544221245555555555555554455555555566655555554
Q ss_pred CC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCc
Q 010557 465 GH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSK 502 (507)
Q Consensus 465 P~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n 502 (507)
+. ..+++|+.|++++|.+..+..+..++.|....++++
T Consensus 347 ~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 347 SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 385 (466)
T ss_dssp GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCE
T ss_pred hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCC
Confidence 32 334455566666666544333555555555555544
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.25 E-value=3.1e-11 Score=129.45 Aligned_cols=125 Identities=17% Similarity=0.170 Sum_probs=70.9
Q ss_pred hhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CC-----
Q 010557 378 IRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LR----- 446 (507)
Q Consensus 378 l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~----- 446 (507)
+..++ .|++|+|++|.|+.+| .|..+++|++|+|++|.|+.+++..+. ++|+.|+|++|.|+.++. +.
T Consensus 119 ~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L 197 (597)
T 3oja_B 119 FQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 197 (597)
T ss_dssp TTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEE
T ss_pred HcCCC-CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhh
Confidence 44443 3577777777777666 356777777777777777777665554 567777777777765420 11
Q ss_pred -----------CCCCccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCcc
Q 010557 447 -----------EMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKS 503 (507)
Q Consensus 447 -----------~L~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~ 503 (507)
....|+.|+|++|.|+.++...+.+|+.|+|++|.|..+..+..+++|....+++|.
T Consensus 198 ~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~ 265 (597)
T 3oja_B 198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 265 (597)
T ss_dssp ECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred hcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc
Confidence 122344444444444444444444555555555555444445555555555555544
No 66
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.25 E-value=5.7e-11 Score=119.60 Aligned_cols=140 Identities=16% Similarity=0.173 Sum_probs=98.1
Q ss_pred cccCCccccc--cchhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCC
Q 010557 364 EINLSEEILH--ANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRN 437 (507)
Q Consensus 364 dLsLn~~il~--~~s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~N 437 (507)
.|.++.+.+. ....+..++ .|++|++++|.|+.+| .|..+++|++|+|++|.|..+++..+. ++|+.|+|++|
T Consensus 97 ~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 97 KLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred EEECCCCCCCcCCHHHhcCCC-CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence 3444444343 234456664 4799999999999998 378999999999999999999887665 78999999999
Q ss_pred CCCCCc--CCCC----------------CCCccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeC
Q 010557 438 KINTIE--GLRE----------------MTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLY 499 (507)
Q Consensus 438 kLs~Lp--~L~~----------------L~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlI 499 (507)
.|+.++ .+.. ...|+.|++++|.|+.++...+..|+.|+|++|.+..+..+..+++|....+
T Consensus 176 ~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 176 RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDL 255 (390)
T ss_dssp CCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred cCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEEC
Confidence 998753 1222 2346666666666666666556667777777776655555555666665555
Q ss_pred CCccC
Q 010557 500 NSKSH 504 (507)
Q Consensus 500 s~n~~ 504 (507)
++|.+
T Consensus 256 s~n~l 260 (390)
T 3o6n_A 256 SYNEL 260 (390)
T ss_dssp CSSCC
T ss_pred CCCcC
Confidence 55543
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.25 E-value=2.8e-11 Score=116.17 Aligned_cols=127 Identities=23% Similarity=0.293 Sum_probs=78.2
Q ss_pred hhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcC-CCCCC--CCCcEEECCCCCCCCCc--CCCCCCC
Q 010557 378 IRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIP-TGSMP--KGLHTLNLSRNKINTIE--GLREMTR 450 (507)
Q Consensus 378 l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ip-p~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~s 450 (507)
+..++ .|+.|++++|.++.++ .+..+++|++|+|++|.|+.+. +..+. .+|+.|+|++|+|+.++ .+..+..
T Consensus 96 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 96 FSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred hcCCc-cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence 44443 3566666666666554 4666666666666666666543 32222 56666666666666643 2333333
Q ss_pred cc----EEEccCCCCcccCCCCCC--CCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccCC
Q 010557 451 LR----VLDLSYNRIFRIGHGNIL--SKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 451 L~----~LdLS~N~Is~IP~~~f~--sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~~ 505 (507)
|+ .|+|++|.|+.++...+. +|+.|+|++|.|..+. .+..+.+|....++.|++.
T Consensus 175 L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 33 666666666666665444 6778899999885543 3577888888888887654
No 68
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.25 E-value=4.9e-11 Score=117.50 Aligned_cols=144 Identities=17% Similarity=0.198 Sum_probs=104.7
Q ss_pred ccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCC-C
Q 010557 361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNK-I 439 (507)
Q Consensus 361 ~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~Nk-L 439 (507)
.+..|.++++.+.....+..++ .|++|++++|.++.++.|..+++|++|+|++|.|..+++.....+|+.|++++|. +
T Consensus 67 ~L~~L~l~~n~i~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~ 145 (347)
T 4fmz_A 67 NLEYLNLNGNQITDISPLSNLV-KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNL 145 (347)
T ss_dssp TCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTC
T ss_pred CccEEEccCCccccchhhhcCC-cCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCc
Confidence 3444555555555555566554 4688888888888877788888888888888888887763333778888888884 4
Q ss_pred CCCcCCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557 440 NTIEGLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 440 s~Lp~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~ 505 (507)
..++.+..+++|+.|++++|.+..++. ..++.|+.|++++|.+..+..+..+..|....++.+.+.
T Consensus 146 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 146 SDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp CCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCC
Confidence 446668888888888888888887654 556688888888888877666777777777777766543
No 69
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.25 E-value=2.4e-11 Score=125.31 Aligned_cols=140 Identities=19% Similarity=0.207 Sum_probs=111.4
Q ss_pred cccccCCccccc--cchhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECC
Q 010557 362 RSEINLSEEILH--ANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLS 435 (507)
Q Consensus 362 ~ldLsLn~~il~--~~s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS 435 (507)
+..|.++.+.+. ....+..++ .|+.|+|++|.|+.+| .|..+++|++|+|++|.|..+.+..|. .+|+.|+|+
T Consensus 58 L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~ 136 (477)
T 2id5_A 58 LEELELNENIVSAVEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEEC
T ss_pred CCEEECCCCccCEeChhhhhCCc-cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECC
Confidence 334455544443 235566665 4799999999999998 589999999999999999999887765 789999999
Q ss_pred CCCCCCCc--CCCCCCCccEEEccCCCCcccCC---CCCCCCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCc
Q 010557 436 RNKINTIE--GLREMTRLRVLDLSYNRIFRIGH---GNILSKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSK 502 (507)
Q Consensus 436 ~NkLs~Lp--~L~~L~sL~~LdLS~N~Is~IP~---~~f~sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n 502 (507)
+|.|+.+. .|..+++|+.|+|++|.|+.++. ..+.+|+.|+|++|.+..+ ..+..+.+|....++.+
T Consensus 137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 137 DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp CTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred CCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence 99999874 48999999999999999998885 4667999999999998443 35667777776666554
No 70
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=3.1e-11 Score=131.18 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=103.7
Q ss_pred cccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCc
Q 010557 364 EINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE 443 (507)
Q Consensus 364 dLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp 443 (507)
.|.++++.+..+.. ++..|+.|++++|.|+.+|. .+++|+.|+|++|.|+.++. ...+|+.|+|++|.|+.+|
T Consensus 104 ~L~Ls~N~l~~ip~---l~~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp 176 (571)
T 3cvr_A 104 YLDACDNRLSTLPE---LPASLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLP 176 (571)
T ss_dssp EEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCC
T ss_pred EEEccCCCCCCcch---hhcCCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcc
Confidence 34444444444333 44478999999999999887 68999999999999999887 3468999999999999988
Q ss_pred CCCCCCCccEEEccCCCCcccCCCCCCCC-------CEEEcCCCCCCCC-CCCCCCCcCCeeeCCCccCC
Q 010557 444 GLREMTRLRVLDLSYNRIFRIGHGNILSK-------PVFWLSFKLFEFL-TIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 444 ~L~~L~sL~~LdLS~N~Is~IP~~~f~sL-------~~L~LS~N~Ls~L-~~L~nL~~LscnlIs~n~~~ 505 (507)
.|. ++|+.|+|++|.|+.||. ...+| +.|+|++|.|..+ ..+..+++|....+++|.+.
T Consensus 177 ~l~--~~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 177 ELP--ESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CCC--TTCCEEECCSSCCSSCCC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred hhh--CCCCEEECcCCCCCchhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 754 899999999999999988 44477 8899999999554 45777888888888888764
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.24 E-value=4.3e-11 Score=117.80 Aligned_cols=139 Identities=20% Similarity=0.250 Sum_probs=102.7
Q ss_pred cccccCCccccccchhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCC
Q 010557 362 RSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRN 437 (507)
Q Consensus 362 ~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~N 437 (507)
+..+.+..+.+.... ..++..|+.|++++|.|+.++ .|..+++|+.|+|++|.|+.+++..+. .+|+.|+|++|
T Consensus 173 L~~L~l~~n~l~~l~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 173 LSYIRIADTNITTIP--QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp CCEEECCSSCCCSCC--SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred cCEEECCCCccccCC--ccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 334444444443222 123356889999999998764 788999999999999999998886665 78999999999
Q ss_pred CCCCCcC-CCCCCCccEEEccCCCCcccCCCCC---------CCCCEEEcCCCCCCC----CCCCCCCCcCCeeeCCCc
Q 010557 438 KINTIEG-LREMTRLRVLDLSYNRIFRIGHGNI---------LSKPVFWLSFKLFEF----LTIIPNCKRLSCNLYNSK 502 (507)
Q Consensus 438 kLs~Lp~-L~~L~sL~~LdLS~N~Is~IP~~~f---------~sL~~L~LS~N~Ls~----L~~L~nL~~LscnlIs~n 502 (507)
.|+.+|. +..+++|+.|+|++|+|+.++...| ..|+.|++++|.+.. +..+..+..|....+++|
T Consensus 251 ~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 251 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 9998875 8888999999999999998887555 466788999998842 345666677777766665
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.24 E-value=6.4e-12 Score=123.69 Aligned_cols=121 Identities=14% Similarity=0.102 Sum_probs=83.8
Q ss_pred CcEEEccCCCCCC---CC---CCCCCCCCCEEEccCCCCCCcCC---CCC--CCCCcEEECCCCCCCCCc---CCCCCCC
Q 010557 385 SAVAHIAGIGLKA---IP---TISHFSSLRSVNLSNNFIVHIPT---GSM--PKGLHTLNLSRNKINTIE---GLREMTR 450 (507)
Q Consensus 385 Lt~L~LS~N~Lt~---LP---~L~~L~sL~~LdLS~N~Is~Ipp---~sf--~~sL~~LdLS~NkLs~Lp---~L~~L~s 450 (507)
|+.|++++|.+.. ++ .+..+++|++|+|++|.|+.++. ..+ .++|+.|+|++|.|+++. .+..+++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 5666666666542 12 23566666666666666664322 111 157888888888887743 3666788
Q ss_pred ccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557 451 LRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 451 L~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~ 505 (507)
|+.|+|++|.|+.||...+.+|+.|+|++|.|..++.+..+++|....+++|++.
T Consensus 255 L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 255 LNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTT
T ss_pred CCEEECCCCccChhhhhccCCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCC
Confidence 8888888888888887766788888888888866666888888888888888765
No 73
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.24 E-value=7.3e-11 Score=116.17 Aligned_cols=105 Identities=24% Similarity=0.381 Sum_probs=66.7
Q ss_pred hhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCCc
Q 010557 377 VIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRL 451 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~sL 451 (507)
.+..++ .|+.|++++|.++.+| .+. ++|+.|+|++|.|+.+++..+. .+|+.|+|++|.|+.++ .+..+++|
T Consensus 166 ~~~~l~-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 242 (330)
T 1xku_A 166 AFQGMK-KLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242 (330)
T ss_dssp GGGGCT-TCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred hccCCC-CcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence 344443 3567777777777666 332 6677777777777766554443 56777777777777653 26666777
Q ss_pred cEEEccCCCCcccCCC--CCCCCCEEEcCCCCCCC
Q 010557 452 RVLDLSYNRIFRIGHG--NILSKPVFWLSFKLFEF 484 (507)
Q Consensus 452 ~~LdLS~N~Is~IP~~--~f~sL~~L~LS~N~Ls~ 484 (507)
+.|+|++|.|+.+|.. .++.|+.|+|++|.|..
T Consensus 243 ~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp CEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CEEECCCCcCccCChhhccCCCcCEEECCCCcCCc
Confidence 7777777777766653 34466777777777644
No 74
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.24 E-value=5.2e-11 Score=121.33 Aligned_cols=121 Identities=24% Similarity=0.330 Sum_probs=68.9
Q ss_pred CCcEEEccCCCCCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCCccEEEcc
Q 010557 384 SSAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLS 457 (507)
Q Consensus 384 sLt~L~LS~N~Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~sL~~LdLS 457 (507)
.|+.|++++|.++.+ | .|..+++|++|+|++|.|+.+++..+. .+|+.|+|++|.|+.++ .|..+++|+.|+|+
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 356666666666643 3 456666666666666666666554443 55666666666666542 25566666666666
Q ss_pred CCCCcccCCC---CCCCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccC
Q 010557 458 YNRIFRIGHG---NILSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 458 ~N~Is~IP~~---~f~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~ 504 (507)
+|+|+.++.. .+++|+.|+|++|.|..+. .+..+++|....+++|++
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 6666655432 2345566666666664432 245555555555555543
No 75
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.24 E-value=3.2e-11 Score=117.25 Aligned_cols=141 Identities=17% Similarity=0.218 Sum_probs=102.5
Q ss_pred ccccCCccccccc---hhhhccccCCcEEEccCCCCCCC-C-CCCCCCCCCEEEccCCCCCC-cCCCCCC--CCCcEEEC
Q 010557 363 SEINLSEEILHAN---SVIRSLNSSSAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVH-IPTGSMP--KGLHTLNL 434 (507)
Q Consensus 363 ldLsLn~~il~~~---s~l~~Lp~sLt~L~LS~N~Lt~L-P-~L~~L~sL~~LdLS~N~Is~-Ipp~sf~--~sL~~LdL 434 (507)
..|.+..+.+... ..+..++ .|+.|++++|.+..+ + .|..+++|++|+|++|.|.. +.+..+. .+|+.|+|
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCT-TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CEEECCCCcccccccchhhhhcc-CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 3344544444432 2455554 478999999988855 4 68888999999999998886 3343333 78999999
Q ss_pred CCCCCCCC-c-CCCCCCCccEEEccCCCCcccCC---CCCCCCCEEEcCCCCCCC--CCCCCCC-CcCCeeeCCCccC
Q 010557 435 SRNKINTI-E-GLREMTRLRVLDLSYNRIFRIGH---GNILSKPVFWLSFKLFEF--LTIIPNC-KRLSCNLYNSKSH 504 (507)
Q Consensus 435 S~NkLs~L-p-~L~~L~sL~~LdLS~N~Is~IP~---~~f~sL~~L~LS~N~Ls~--L~~L~nL-~~LscnlIs~n~~ 504 (507)
++|.|+.+ + .+..+++|+.|+|++|.|+.++. ..+++|+.|+|++|.|.. +..+..+ .+|....+++|++
T Consensus 183 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 99999886 3 38888999999999999988776 345688899999998843 4556666 4788777777764
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.23 E-value=5.5e-11 Score=127.47 Aligned_cols=108 Identities=23% Similarity=0.278 Sum_probs=77.1
Q ss_pred hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCC
Q 010557 377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTR 450 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~s 450 (507)
.+..++ .|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.+++..|. .+|+.|+|++|.|++++ .|..+++
T Consensus 94 ~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 172 (597)
T 3oja_B 94 AFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172 (597)
T ss_dssp TTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred HhcCCC-CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc
Confidence 444443 4677777777777665 567777777777777777777776553 67777777777777764 2777777
Q ss_pred ccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCC
Q 010557 451 LRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFL 485 (507)
Q Consensus 451 L~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L 485 (507)
|+.|+|++|.|+.++.+.++.|+.|++++|.+..+
T Consensus 173 L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 173 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred CcEEECcCCCCCCcChhhhhhhhhhhcccCccccc
Confidence 77777777777777777777777777777776543
No 77
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.23 E-value=9.3e-11 Score=115.72 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=62.7
Q ss_pred CcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC--C-c-CCCCCCCccEEEcc
Q 010557 385 SAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT--I-E-GLREMTRLRVLDLS 457 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~--L-p-~L~~L~sL~~LdLS 457 (507)
|++|++++|.|+.+| .+. ++|++|+|++|.|+.+++..+. .+|+.|+|++|.++. + + .+..+ +|+.|+|+
T Consensus 104 L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 104 LQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 455555555555555 322 4555555555555555554332 455555555555542 1 1 13333 45555555
Q ss_pred CCCCcccCCCCCCCCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCccC
Q 010557 458 YNRIFRIGHGNILSKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 458 ~N~Is~IP~~~f~sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n~~ 504 (507)
+|.|+.+|...+..|+.|+|++|.|..+ ..+..+.+|....++.|.+
T Consensus 181 ~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l 229 (332)
T 2ft3_A 181 EAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229 (332)
T ss_dssp SSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC
T ss_pred CCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 5555555555555667777777776432 3455666666655555544
No 78
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.23 E-value=1.9e-11 Score=121.69 Aligned_cols=127 Identities=17% Similarity=0.237 Sum_probs=94.4
Q ss_pred hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC---CCCCC
Q 010557 377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG---LREMT 449 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~---L~~L~ 449 (507)
.+..++ .|+.|++++|.|+.++ .|..+++|++|+|++|.|+.+++..+. .+|+.|+|++|.|+.++. +..++
T Consensus 71 ~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 71 DLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149 (353)
T ss_dssp TTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred HhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence 355554 4688888888888764 588888888888888888888775433 678888888888888754 77888
Q ss_pred CccEEEccCC-CCcccCCCCC---CCCCEEEcCCCCCCC--CCCCCCCCcCCeeeCCCccC
Q 010557 450 RLRVLDLSYN-RIFRIGHGNI---LSKPVFWLSFKLFEF--LTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 450 sL~~LdLS~N-~Is~IP~~~f---~sL~~L~LS~N~Ls~--L~~L~nL~~LscnlIs~n~~ 504 (507)
+|+.|+|++| .++.++...| ..|+.|++++|.+.. +..+..+++|....++.|.+
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 8888888888 5777766544 356678888888743 46677777777777766654
No 79
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=2.2e-11 Score=108.76 Aligned_cols=107 Identities=19% Similarity=0.167 Sum_probs=91.6
Q ss_pred hhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCC--CCCCcEEECCCCCCCCCc---CCCCCCCcc
Q 010557 378 IRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSM--PKGLHTLNLSRNKINTIE---GLREMTRLR 452 (507)
Q Consensus 378 l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf--~~sL~~LdLS~NkLs~Lp---~L~~L~sL~ 452 (507)
+..++ .|+.|++++|.|+.++.|..+++|++|+|++|.|+.+.+..+ .++|+.|+|++|.|+.++ .+..+++|+
T Consensus 45 ~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 45 TAEFV-NLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp CGGGG-GCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred HHhCC-CCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 35554 479999999999988889999999999999999999655443 279999999999999975 488999999
Q ss_pred EEEccCCCCcccCC------CCCCCCCEEEcCCCCCCCC
Q 010557 453 VLDLSYNRIFRIGH------GNILSKPVFWLSFKLFEFL 485 (507)
Q Consensus 453 ~LdLS~N~Is~IP~------~~f~sL~~L~LS~N~Ls~L 485 (507)
.|+|++|.|+.++. ..++.|+.|+++.|.+..+
T Consensus 124 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 99999999998876 4577999999999988544
No 80
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.22 E-value=1.5e-11 Score=121.33 Aligned_cols=121 Identities=17% Similarity=0.150 Sum_probs=91.7
Q ss_pred CCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC---CCCcEEECCCCCCCCCcCCCCCCCccEEEccC
Q 010557 384 SSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP---KGLHTLNLSRNKINTIEGLREMTRLRVLDLSY 458 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~---~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~ 458 (507)
.|+.|++++|.|+.++ .+..+++|++|+|++|.|+.+++..+. .+|+.|+|++|.|+.++....+++|+.|+|++
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS 200 (317)
T ss_dssp SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS
T ss_pred CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCC
Confidence 4678888888888764 677788888888888888887665442 67888888888888877766688888888888
Q ss_pred CCCcccCCC--CCCCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCccC
Q 010557 459 NRIFRIGHG--NILSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 459 N~Is~IP~~--~f~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~~ 504 (507)
|+|+.++.. .+++|+.|+|++|.|.. +..+..+.+|....++.|.+
T Consensus 201 N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 201 NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp SCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCC
T ss_pred CcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCc
Confidence 888887663 34578888888888844 45567777787777777765
No 81
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.22 E-value=1.6e-11 Score=122.59 Aligned_cols=140 Identities=17% Similarity=0.189 Sum_probs=109.3
Q ss_pred cccCCccccc-cchhhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCC
Q 010557 364 EINLSEEILH-ANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKIN 440 (507)
Q Consensus 364 dLsLn~~il~-~~s~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs 440 (507)
.|++.++.+. ....+..++ .|++|+|++|.|+.+| .|..+++|++|+|++|.|+.++..... .+|+.|+|++|.+.
T Consensus 85 ~L~L~~n~l~~lp~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 85 ALELRSVPLPQFPDQAFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL 163 (328)
T ss_dssp EEEEESSCCSSCCSCGGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTC
T ss_pred EEEccCCCchhcChhhhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCc
Confidence 3444443333 233355554 5799999999999999 899999999999999999988764333 79999999997655
Q ss_pred C-CcC-CC---------CCCCccEEEccCCCCcccCC--CCCCCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCccC
Q 010557 441 T-IEG-LR---------EMTRLRVLDLSYNRIFRIGH--GNILSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 441 ~-Lp~-L~---------~L~sL~~LdLS~N~Is~IP~--~~f~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~~ 504 (507)
+ +|. +. .+++|+.|+|++|.|+.+|. ..+.+|+.|+|++|.|.. +..+..+++|....+++|..
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTT
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcc
Confidence 4 654 43 49999999999999998886 456799999999999954 45688888888888887643
No 82
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.22 E-value=8.3e-11 Score=114.34 Aligned_cols=106 Identities=23% Similarity=0.368 Sum_probs=79.3
Q ss_pred hhhccccCCcEEEccCCCCCC--CC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCC
Q 010557 377 VIRSLNSSSAVAHIAGIGLKA--IP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMT 449 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~Lt~--LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~ 449 (507)
.+..++ .|+.|++++|.++. +| .|..+++|++|+|++|.|+.+++..+. ++|+.|+|++|.|+.++. +..++
T Consensus 145 ~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 145 IFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp TTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred hcccCc-CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 344443 46888888888874 56 788888888888888888888776554 678888888888888753 77788
Q ss_pred CccEEEccCCCCcccCCC---CC-CCCCEEEcCCCCCC
Q 010557 450 RLRVLDLSYNRIFRIGHG---NI-LSKPVFWLSFKLFE 483 (507)
Q Consensus 450 sL~~LdLS~N~Is~IP~~---~f-~sL~~L~LS~N~Ls 483 (507)
+|+.|+|++|.|+.++.. .+ .+|+.|+|++|.|.
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 888888888888876543 23 36778888888773
No 83
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.21 E-value=5.5e-11 Score=127.81 Aligned_cols=127 Identities=18% Similarity=0.168 Sum_probs=91.5
Q ss_pred hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCC
Q 010557 377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTR 450 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~s 450 (507)
.+..++ .|++|++++|.|+.++ .|..+++|++|+|++|.|+.+++..|. .+|++|+|++|.|+.++ .|..+++
T Consensus 44 ~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 44 NFTRYS-QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGGGGT-TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred HHhCCC-cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 455554 4688888888888664 577888888888888888888876554 78888888888888875 3788888
Q ss_pred ccEEEccCCCCcccCCC---CCCCCCEEEcCCCCCCCCCC----CCCCCcCCeeeCCCccC
Q 010557 451 LRVLDLSYNRIFRIGHG---NILSKPVFWLSFKLFEFLTI----IPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 451 L~~LdLS~N~Is~IP~~---~f~sL~~L~LS~N~Ls~L~~----L~nL~~LscnlIs~n~~ 504 (507)
|++|+|++|.++.++.. .+.+|+.|+|++|.+..+.. ...+..|....++.|.+
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 88888888888876654 34577888888888754321 22345666666666544
No 84
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.21 E-value=1.7e-10 Score=120.64 Aligned_cols=133 Identities=19% Similarity=0.196 Sum_probs=105.6
Q ss_pred ccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcC
Q 010557 365 INLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG 444 (507)
Q Consensus 365 LsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~ 444 (507)
+.++++.+.. +..++..|+.|++++|.++.+|.+ +++|+.|++++|.|+.++.. +.+|+.|+|++|.|+++|.
T Consensus 76 L~l~~~~l~~---lp~~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp~ 148 (454)
T 1jl5_A 76 LELNNLGLSS---LPELPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLPE 148 (454)
T ss_dssp EECTTSCCSC---CCSCCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCCC
T ss_pred EEecCCcccc---CCCCcCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCcc
Confidence 4444444433 223567789999999999988843 47899999999999987653 2689999999999999988
Q ss_pred CCCCCCccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557 445 LREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 445 L~~L~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~ 505 (507)
+..+++|+.|+|++|+|+.+|.. +.+|+.|++++|.+..++.++++++|....++.|.+.
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~-~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDL-PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred cCCCCCCCEEECCCCcCcccCCC-cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC
Confidence 99999999999999999988753 4689999999999877777888888888777777654
No 85
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.21 E-value=1.7e-11 Score=122.07 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=101.7
Q ss_pred ccccCCcccccc--chhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCC-CCCC--CCCcEEECC
Q 010557 363 SEINLSEEILHA--NSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPT-GSMP--KGLHTLNLS 435 (507)
Q Consensus 363 ldLsLn~~il~~--~s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp-~sf~--~sL~~LdLS 435 (507)
..|.++++.+.. ...+..++ .|++|++++|.|+.++ .|..+++|++|+|++|.|+.++. ..+. ++|+.|+|+
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~ 157 (353)
T 2z80_A 79 QALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 157 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred CEEECCCCccCccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECC
Confidence 334444444432 23455554 4799999999999888 38889999999999999998887 4443 789999999
Q ss_pred CC-CCCCCc--CCCCCCCccEEEccCCCCcccCCCCC---CCCCEEEcCCCCCCCCCC--CCCCCcCCeeeCCCccCC
Q 010557 436 RN-KINTIE--GLREMTRLRVLDLSYNRIFRIGHGNI---LSKPVFWLSFKLFEFLTI--IPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 436 ~N-kLs~Lp--~L~~L~sL~~LdLS~N~Is~IP~~~f---~sL~~L~LS~N~Ls~L~~--L~nL~~LscnlIs~n~~~ 505 (507)
+| .+..++ .+..+++|+.|+|++|.|+.+....+ .+|+.|++++|.+..+.. +..+.+|....++.|.+.
T Consensus 158 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 98 577764 38889999999999999998765444 466778999998855432 223555666555555543
No 86
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.20 E-value=7.4e-11 Score=122.16 Aligned_cols=145 Identities=18% Similarity=0.230 Sum_probs=119.8
Q ss_pred cccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCC
Q 010557 360 TRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKI 439 (507)
Q Consensus 360 ~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkL 439 (507)
..+..|.+.++.+.....+..++ .|+.|++++|.++.++.+..+++|+.|+|++|.|+.+++.....+|+.|+|++|.+
T Consensus 221 ~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l 299 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDIGTLASLT-NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 299 (466)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCT-TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC
T ss_pred CCCCEEECCCCCcccchhhhcCC-CCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcc
Confidence 34445666666666666677665 47999999999998877889999999999999999988733337899999999999
Q ss_pred CCCcCCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557 440 NTIEGLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 440 s~Lp~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~ 505 (507)
++++.+..+++|+.|+|++|.|+.++. ..+++|+.|++++|.+..+..+.++.+|....+++|.+.
T Consensus 300 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 300 EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp SCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred cCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccC
Confidence 998778899999999999999997654 567799999999999988888889999998888888764
No 87
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.20 E-value=4.6e-11 Score=126.42 Aligned_cols=104 Identities=27% Similarity=0.336 Sum_probs=82.7
Q ss_pred ccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcCCCCCCCccEEE
Q 010557 380 SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEGLREMTRLRVLD 455 (507)
Q Consensus 380 ~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~L~~L~sL~~Ld 455 (507)
.++..++.|++++|.|+.++ .|..+++|++|+|++|.|+.+++..|. .+|++|+|++|.|+.+|.. .+++|+.|+
T Consensus 49 ~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~ 127 (562)
T 3a79_B 49 DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLD 127 (562)
T ss_dssp TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEE
T ss_pred CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEE
Confidence 34567888888888888776 788888888888888888888777665 7888888888888888766 788888888
Q ss_pred ccCCCCcccCC----CCCCCCCEEEcCCCCCCC
Q 010557 456 LSYNRIFRIGH----GNILSKPVFWLSFKLFEF 484 (507)
Q Consensus 456 LS~N~Is~IP~----~~f~sL~~L~LS~N~Ls~ 484 (507)
|++|+|+.++. ..+.+|+.|+|++|.|..
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 88888887653 345678888888888754
No 88
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.19 E-value=3.3e-10 Score=118.60 Aligned_cols=139 Identities=17% Similarity=0.123 Sum_probs=110.7
Q ss_pred cccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCC-CC
Q 010557 362 RSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNK-IN 440 (507)
Q Consensus 362 ~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~Nk-Ls 440 (507)
+..|.++.+.+.... +..++ .|++|++++|.|+.++ +..+++|++|+|++|.|+.++-..+ .+|+.|++++|. +.
T Consensus 87 L~~L~Ls~N~l~~~~-~~~l~-~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~l~~l-~~L~~L~l~~n~~~~ 162 (457)
T 3bz5_A 87 LTYLACDSNKLTNLD-VTPLT-KLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEIDVSHN-TQLTELDCHLNKKIT 162 (457)
T ss_dssp CSEEECCSSCCSCCC-CTTCT-TCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCCCTTC-TTCCEEECTTCSCCC
T ss_pred CCEEECcCCCCceee-cCCCC-cCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceeccccC-CcCCEEECCCCCccc
Confidence 334455555555443 56664 4799999999999887 8899999999999999999853322 689999999994 55
Q ss_pred CCcCCCCCCCccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCCC
Q 010557 441 TIEGLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHSA 506 (507)
Q Consensus 441 ~Lp~L~~L~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~~ 506 (507)
.+ .+..+++|+.|+|++|+|+.+|...++.|+.|++++|.|..+ .++.+.+|....++.|.+..
T Consensus 163 ~~-~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 163 KL-DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp CC-CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSC
T ss_pred cc-ccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccc
Confidence 55 688899999999999999999877888999999999999777 48888888888888887654
No 89
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.18 E-value=1.1e-10 Score=119.06 Aligned_cols=98 Identities=24% Similarity=0.325 Sum_probs=49.3
Q ss_pred CcEEEccCCCCC-CCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC--CcC--CCCCCCccEEE
Q 010557 385 SAVAHIAGIGLK-AIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT--IEG--LREMTRLRVLD 455 (507)
Q Consensus 385 Lt~L~LS~N~Lt-~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~--Lp~--L~~L~sL~~Ld 455 (507)
|++|++++|.+. .++ .|..+++|++|+|++|.|+.+.+..+. .+|+.|+|++|.|++ +.. +..+++|+.|+
T Consensus 56 L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 135 (455)
T 3v47_A 56 LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135 (455)
T ss_dssp CCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEE
T ss_pred ccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEE
Confidence 455555555554 332 455555555555555555555444333 455555555555554 222 55555555555
Q ss_pred ccCCCCcccCCC----CCCCCCEEEcCCCCC
Q 010557 456 LSYNRIFRIGHG----NILSKPVFWLSFKLF 482 (507)
Q Consensus 456 LS~N~Is~IP~~----~f~sL~~L~LS~N~L 482 (507)
|++|.|+.+... .++.|+.|+|++|.+
T Consensus 136 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp CCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 555555544221 234555555555555
No 90
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.18 E-value=1.1e-10 Score=121.76 Aligned_cols=126 Identities=17% Similarity=0.134 Sum_probs=99.6
Q ss_pred hhccccCCcEEEccCCCCCCCC----CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcCCCCCCCcc
Q 010557 378 IRSLNSSSAVAHIAGIGLKAIP----TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEGLREMTRLR 452 (507)
Q Consensus 378 l~~Lp~sLt~L~LS~N~Lt~LP----~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~L~~L~sL~ 452 (507)
+..++ .|+.|++++|.|+.++ .+..+++|++|+|++|.|+.++..... .+|+.|+|++|.|+.++... .++|+
T Consensus 357 ~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~-~~~L~ 434 (549)
T 2z81_A 357 KGAWP-SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI-PQTLE 434 (549)
T ss_dssp TTSST-TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS-CTTCS
T ss_pred hhccc-cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh-cCCce
Confidence 34443 4788999999998775 378889999999999999988775443 78999999999988876521 26789
Q ss_pred EEEccCCCCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCCC
Q 010557 453 VLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHSA 506 (507)
Q Consensus 453 ~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~~ 506 (507)
.|+|++|+|+.++ ..++.|+.|+|++|.|..++....+++|....+++|.+..
T Consensus 435 ~L~Ls~N~l~~~~-~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 435 VLDVSNNNLDSFS-LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp EEECCSSCCSCCC-CCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCC
T ss_pred EEECCCCChhhhc-ccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCC
Confidence 9999999998876 4677999999999999777767778888888888886653
No 91
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.18 E-value=2.5e-10 Score=122.65 Aligned_cols=98 Identities=18% Similarity=0.314 Sum_probs=44.0
Q ss_pred CcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCC--------CC--CCCcEEECCCCCCCCCcC--CCCCCC
Q 010557 385 SAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGS--------MP--KGLHTLNLSRNKINTIEG--LREMTR 450 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~s--------f~--~sL~~LdLS~NkLs~Lp~--L~~L~s 450 (507)
|+.|++++|.|+.++ .|..+++|++|+|++|.|+.++... +. .+|+.|+|++|.|+.+|. |..+++
T Consensus 482 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~ 561 (680)
T 1ziw_A 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccC
Confidence 344444444444443 2444444444444444444432211 11 344445555554444432 444455
Q ss_pred ccEEEccCCCCcccCCCCC---CCCCEEEcCCCCC
Q 010557 451 LRVLDLSYNRIFRIGHGNI---LSKPVFWLSFKLF 482 (507)
Q Consensus 451 L~~LdLS~N~Is~IP~~~f---~sL~~L~LS~N~L 482 (507)
|+.|+|++|+|+.+|...| .+|+.|+|++|.|
T Consensus 562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 5555555555554444332 2444455555544
No 92
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.17 E-value=1.9e-10 Score=113.47 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=100.9
Q ss_pred cccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC-CCCCCCccEEE
Q 010557 381 LNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG-LREMTRLRVLD 455 (507)
Q Consensus 381 Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~-L~~L~sL~~Ld 455 (507)
++..++.|++++|.|+.++ .|..+++|++|+|++|.|+.+.+..+. .+|+.|+|++|.|+.+|. +. ++|+.|+
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELR 129 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEE
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEE
Confidence 4567899999999999885 799999999999999999999876665 799999999999999875 33 8999999
Q ss_pred ccCCCCcccCCC---CCCCCCEEEcCCCCCC----CCCCCCCCCcCCeeeCCCccCC
Q 010557 456 LSYNRIFRIGHG---NILSKPVFWLSFKLFE----FLTIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 456 LS~N~Is~IP~~---~f~sL~~L~LS~N~Ls----~L~~L~nL~~LscnlIs~n~~~ 505 (507)
|++|.|+.++.. .+++|+.|++++|.+. .+..+..+ +|....++.+.+.
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 999999999874 4668899999999984 24555555 6666666666543
No 93
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.17 E-value=8.7e-11 Score=124.32 Aligned_cols=125 Identities=18% Similarity=0.251 Sum_probs=79.2
Q ss_pred hhhccccCCcEEEccCCCCCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC--CcC-CCCCC
Q 010557 377 VIRSLNSSSAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT--IEG-LREMT 449 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~--Lp~-L~~L~ 449 (507)
.+..++ .|++|++++|.|+.+ | .|..+++|++|+|++|.|+.+++..+. .+|+.|+|++|.|+. +|. +..++
T Consensus 75 ~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~ 153 (606)
T 3vq2_A 75 AWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153 (606)
T ss_dssp TTTTCT-TCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT
T ss_pred Hhhchh-hcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC
Confidence 445553 367777777777766 4 677777777777777777777755544 677777777777775 343 77777
Q ss_pred CccEEEccCCCCcccCCCCCC---C----CCEEEcCCCCCCCC-CCCCCCCcCCeeeCCCc
Q 010557 450 RLRVLDLSYNRIFRIGHGNIL---S----KPVFWLSFKLFEFL-TIIPNCKRLSCNLYNSK 502 (507)
Q Consensus 450 sL~~LdLS~N~Is~IP~~~f~---s----L~~L~LS~N~Ls~L-~~L~nL~~LscnlIs~n 502 (507)
+|+.|+|++|.|+.++...|. . +..|+++.|.+..+ .......+|....++.+
T Consensus 154 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 214 (606)
T 3vq2_A 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214 (606)
T ss_dssp TCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred CCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence 777777777777777665443 2 33677777777432 22222334555555444
No 94
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.17 E-value=5.2e-11 Score=128.72 Aligned_cols=102 Identities=20% Similarity=0.229 Sum_probs=91.4
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcCCCCCCCccEEEccCCCCc
Q 010557 384 SSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIF 462 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N~Is 462 (507)
.|+.|+|++|.|+.+|.|..+++|+.|+|++|.|+.+|..... .+|+.|+|++|.|+++|.+..|++|+.|+|++|+|+
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCC
Confidence 4789999999999999999999999999999999988764333 899999999999999999999999999999999999
Q ss_pred cc--CC--CCCCCCCEEEcCCCCCCCC
Q 010557 463 RI--GH--GNILSKPVFWLSFKLFEFL 485 (507)
Q Consensus 463 ~I--P~--~~f~sL~~L~LS~N~Ls~L 485 (507)
.+ |. ..+++|+.|+|++|.|..+
T Consensus 522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 522 QSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 88 44 4577999999999999543
No 95
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.17 E-value=2.6e-11 Score=119.79 Aligned_cols=128 Identities=20% Similarity=0.219 Sum_probs=81.5
Q ss_pred chhhhccccCCcEEEccCCCCC-CCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCC-cCCCCCC
Q 010557 375 NSVIRSLNSSSAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTI-EGLREMT 449 (507)
Q Consensus 375 ~s~l~~Lp~sLt~L~LS~N~Lt-~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~L-p~L~~L~ 449 (507)
...+..++..|+.|++++|.|+ .+| .|..+. |++|+|++|.|+.+.+..+. .+|+.|+|++|.|++. +.+..++
T Consensus 166 p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~ 244 (313)
T 1ogq_A 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244 (313)
T ss_dssp CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCT
T ss_pred CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccC
Confidence 3445555545667777777766 455 555555 77777777777666554443 5677777777777753 4466677
Q ss_pred CccEEEccCCCCc-ccCC--CCCCCCCEEEcCCCCCC-CCCCCCCCCcCCeeeCCCcc
Q 010557 450 RLRVLDLSYNRIF-RIGH--GNILSKPVFWLSFKLFE-FLTIIPNCKRLSCNLYNSKS 503 (507)
Q Consensus 450 sL~~LdLS~N~Is-~IP~--~~f~sL~~L~LS~N~Ls-~L~~L~nL~~LscnlIs~n~ 503 (507)
+|+.|+|++|.|+ .+|. ..++.|+.|+|++|.|. .++....+++|....+..|+
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 7777777777777 3443 34557777777777773 44445666666666666654
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.17 E-value=3.7e-11 Score=126.63 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=86.7
Q ss_pred CCcEEEccCCCCCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC---CCCcEEECCCCCCCCCcCCCCCCCccEEEccC
Q 010557 384 SSAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP---KGLHTLNLSRNKINTIEGLREMTRLRVLDLSY 458 (507)
Q Consensus 384 sLt~L~LS~N~Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~---~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~ 458 (507)
.|+.|++++|.|+.+ | .|..+++|++|+|++|.|+.+++..+. ++|+.|+|++|.|++++.+..+++|+.|+|++
T Consensus 121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~ 200 (487)
T 3oja_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS 200 (487)
T ss_dssp SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS
T ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCC
Confidence 467778888887765 3 677778888888888888776654442 67888888888887777666677888888888
Q ss_pred CCCcccCCC--CCCCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCccC
Q 010557 459 NRIFRIGHG--NILSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 459 N~Is~IP~~--~f~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~~ 504 (507)
|.|+.+|.. .+++|+.|+|++|.|.. +..+..+.+|....+++|.+
T Consensus 201 N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 201 NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp SCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred CCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCC
Confidence 888877653 34577778888887744 44566677777777766654
No 97
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.17 E-value=9.2e-11 Score=124.10 Aligned_cols=118 Identities=23% Similarity=0.284 Sum_probs=103.9
Q ss_pred cEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCC-cC-CCCCCCccEEEccCCC
Q 010557 386 AVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTI-EG-LREMTRLRVLDLSYNR 460 (507)
Q Consensus 386 t~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~L-p~-L~~L~sL~~LdLS~N~ 460 (507)
+.+++++|+|+.+| .+. ++|+.|+|++|.|+.+++..|. ++|+.|+|++|.|+++ +. |..+++|+.|+|++|.
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 78999999999999 554 8999999999999999986665 7999999999999997 44 9999999999999999
Q ss_pred CcccCCCCCCCCCEEEcCCCCCCCC---CCCCCCCcCCeeeCCCccCC
Q 010557 461 IFRIGHGNILSKPVFWLSFKLFEFL---TIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 461 Is~IP~~~f~sL~~L~LS~N~Ls~L---~~L~nL~~LscnlIs~n~~~ 505 (507)
|+.||...+.+|+.|+|++|.|..+ ..++++++|....++.|.+.
T Consensus 112 l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 112 LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 9999988888999999999999553 56888888888777777553
No 98
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.16 E-value=4.6e-11 Score=118.04 Aligned_cols=140 Identities=18% Similarity=0.092 Sum_probs=103.5
Q ss_pred cccCCccccc--cchhhhccccCCcEEEccCCCCC-CCC-CCCCCC-CCCEEEccCCCCCCcCCCCCC-CCCcEEECCCC
Q 010557 364 EINLSEEILH--ANSVIRSLNSSSAVAHIAGIGLK-AIP-TISHFS-SLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRN 437 (507)
Q Consensus 364 dLsLn~~il~--~~s~l~~Lp~sLt~L~LS~N~Lt-~LP-~L~~L~-sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~N 437 (507)
.|.++.+.+. ....+..++ .|++|++++|.|+ .+| .|..++ +|++|+|++|.|+...+..+. ..|+.|+|++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLP-NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCC-CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCC
Confidence 3444443333 334556664 4688888888888 777 788887 888888888888866665554 34888999999
Q ss_pred CCCCC-cC-CCCCCCccEEEccCCCCcccCC--CCCCCCCEEEcCCCCCC--CCCCCCCCCcCCeeeCCCccC
Q 010557 438 KINTI-EG-LREMTRLRVLDLSYNRIFRIGH--GNILSKPVFWLSFKLFE--FLTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 438 kLs~L-p~-L~~L~sL~~LdLS~N~Is~IP~--~~f~sL~~L~LS~N~Ls--~L~~L~nL~~LscnlIs~n~~ 504 (507)
.|+++ +. +..+++|+.|+|++|.|+..+. ..+++|+.|+|++|.|. .+..+..+.+|....+++|.+
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 88864 33 8889999999999999985433 45568999999999994 466788888888888887754
No 99
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.16 E-value=7.9e-11 Score=122.97 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=52.3
Q ss_pred cCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCCccEEEc
Q 010557 383 SSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDL 456 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~sL~~LdL 456 (507)
..++.|++++|.|+.++ .|..+++|++|+|++|.|+.+++..|. .+|++|+|++|.|+.++ .|..+++|+.|+|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 34444444444444433 344444444444444444444443332 34444444444444432 1444444444444
Q ss_pred cCCCCcccCC---CCCCCCCEEEcCCCCCCC---CCCCCCCCcCCeeeCCCc
Q 010557 457 SYNRIFRIGH---GNILSKPVFWLSFKLFEF---LTIIPNCKRLSCNLYNSK 502 (507)
Q Consensus 457 S~N~Is~IP~---~~f~sL~~L~LS~N~Ls~---L~~L~nL~~LscnlIs~n 502 (507)
++|.|+.++. +.+.+|+.|+|++|.+.. +..++++++|....++.+
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence 4444444433 222344444444444421 233444444444444333
No 100
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.15 E-value=4.3e-11 Score=124.56 Aligned_cols=121 Identities=25% Similarity=0.244 Sum_probs=96.1
Q ss_pred cccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcCCCCCCCccEEEc
Q 010557 381 LNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEGLREMTRLRVLDL 456 (507)
Q Consensus 381 Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdL 456 (507)
++..+++|++++|.|+.++ .|..+++|++|+|++|.|+.+.+..|. .+|++|+|++|+|+.+|.. .+++|+.|+|
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L 97 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDL 97 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEEC
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEec
Confidence 4567899999999999876 789999999999999999998776654 7899999999999998776 8899999999
Q ss_pred cCCCCcccC--C--CCCCCCCEEEcCCCCCCCCCCCCCCCcC--CeeeCCCcc
Q 010557 457 SYNRIFRIG--H--GNILSKPVFWLSFKLFEFLTIIPNCKRL--SCNLYNSKS 503 (507)
Q Consensus 457 S~N~Is~IP--~--~~f~sL~~L~LS~N~Ls~L~~L~nL~~L--scnlIs~n~ 503 (507)
++|.|+.++ . +.+.+|+.|+|++|.|.. ..+..+..| ....++.+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-GGGGGGTTSCEEEEEEEECT
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch-hhccccccceeeEEEeeccc
Confidence 999998753 2 456789999999999854 234444454 554444443
No 101
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=8.3e-11 Score=116.57 Aligned_cols=94 Identities=16% Similarity=0.234 Sum_probs=48.5
Q ss_pred EccCC-CCCCCCCCCCCCCCCEEEccC-CCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCCc
Q 010557 389 HIAGI-GLKAIPTISHFSSLRSVNLSN-NFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIF 462 (507)
Q Consensus 389 ~LS~N-~Lt~LP~L~~L~sL~~LdLS~-N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~Is 462 (507)
+++++ +|+.||.|..+++|+.|+|++ |.|+.+++..|. .+|+.|+|++|+|++++. |..|++|+.|+|++|+|+
T Consensus 14 ~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred EcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 44444 555555555555555555553 555555544333 455555555555555432 455555555555555555
Q ss_pred ccCCCCCC--CCCEEEcCCCCC
Q 010557 463 RIGHGNIL--SKPVFWLSFKLF 482 (507)
Q Consensus 463 ~IP~~~f~--sL~~L~LS~N~L 482 (507)
.+|...|. .|+.|+|.+|.|
T Consensus 94 ~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 94 SLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CCCSTTTCSCCCCEEECCSSCC
T ss_pred eeCHHHcccCCceEEEeeCCCc
Confidence 55544433 245555555554
No 102
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.15 E-value=2.3e-11 Score=119.94 Aligned_cols=122 Identities=19% Similarity=0.189 Sum_probs=89.1
Q ss_pred cCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CC-CCCCCccEEEcc
Q 010557 383 SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GL-REMTRLRVLDLS 457 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L-~~L~sL~~LdLS 457 (507)
..|+.|++++|.|+.++. ..+++|+.|+|++|.|+.+++..+. .+|+.|+|++|.|+.++ .+ ..+++|+.|+|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 99 PSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp TTCCEEECCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CCcCEEECCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 346777777777776651 2357788888888888888776554 67888888888888753 24 467888888888
Q ss_pred CCCCcccCCC-CCCCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCccCC
Q 010557 458 YNRIFRIGHG-NILSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 458 ~N~Is~IP~~-~f~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~~~ 505 (507)
+|.|+.++.. .+++|+.|+|++|.|.. +..+..+.+|....+++|.+.
T Consensus 178 ~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 178 YNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp TSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred CCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc
Confidence 8888887653 35688888888888844 355777777887777777654
No 103
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.15 E-value=5.1e-11 Score=117.24 Aligned_cols=122 Identities=20% Similarity=0.128 Sum_probs=85.1
Q ss_pred cCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCc---CC-CCC--CCCCcEEECCCCCCCCCcC-----CCCCC
Q 010557 383 SSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHI---PT-GSM--PKGLHTLNLSRNKINTIEG-----LREMT 449 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~I---pp-~sf--~~sL~~LdLS~NkLs~Lp~-----L~~L~ 449 (507)
..|++|++++|.|+.++ .|..+++|++|+|++|.+.+. +. ..+ ..+|+.|+|++|.|+.++. +..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 56788888888888665 688888888888888886542 21 111 1678888888888886432 45678
Q ss_pred CccEEEccCCCCcccCC-C---CCCCCCEEEcCCCCCCCC-CCCCCCCcCCeeeCCCccCCC
Q 010557 450 RLRVLDLSYNRIFRIGH-G---NILSKPVFWLSFKLFEFL-TIIPNCKRLSCNLYNSKSHSA 506 (507)
Q Consensus 450 sL~~LdLS~N~Is~IP~-~---~f~sL~~L~LS~N~Ls~L-~~L~nL~~LscnlIs~n~~~~ 506 (507)
+|+.|+|++|+|+.++. . .+.+|+.|+|++|.|..+ ..+. .+|....+++|.+..
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDR 288 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCS
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCC
Confidence 88888888888887442 2 245788888888888544 3343 667777777776543
No 104
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.15 E-value=1.5e-10 Score=125.49 Aligned_cols=128 Identities=17% Similarity=0.120 Sum_probs=74.7
Q ss_pred hhhccccCCcEEEccCCCCCCCC-CCCCCC--CCCEEEccCCCCCCcCCCCCC---------CCCcEEECCCCCCCCCcC
Q 010557 377 VIRSLNSSSAVAHIAGIGLKAIP-TISHFS--SLRSVNLSNNFIVHIPTGSMP---------KGLHTLNLSRNKINTIEG 444 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~--sL~~LdLS~N~Is~Ipp~sf~---------~sL~~LdLS~NkLs~Lp~ 444 (507)
.+..++..|+.|++++|.|+.+| .+..+. +|+.|+|++|.|..+.+..+. .+|+.|+|++|.|+.+|.
T Consensus 371 ~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~ 450 (636)
T 4eco_A 371 NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450 (636)
T ss_dssp TSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT
T ss_pred hhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH
Confidence 34555443677777777777777 444433 667777777766664443221 356666666666666654
Q ss_pred --CCCCCCccEEEccCCCCcccCCCCCC----------CCCEEEcCCCCCCC-CCCCC--CCCcCCeeeCCCccC
Q 010557 445 --LREMTRLRVLDLSYNRIFRIGHGNIL----------SKPVFWLSFKLFEF-LTIIP--NCKRLSCNLYNSKSH 504 (507)
Q Consensus 445 --L~~L~sL~~LdLS~N~Is~IP~~~f~----------sL~~L~LS~N~Ls~-L~~L~--nL~~LscnlIs~n~~ 504 (507)
+..+++|+.|+|++|+|+.||...+. .|+.|+|++|.|.. +..+. .+.+|....+++|.+
T Consensus 451 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l 525 (636)
T 4eco_A 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525 (636)
T ss_dssp HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCC
T ss_pred HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCC
Confidence 44566666666666666666655443 56666666666633 23333 555555555555544
No 105
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.15 E-value=2e-10 Score=104.34 Aligned_cols=86 Identities=17% Similarity=0.279 Sum_probs=77.2
Q ss_pred ccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccE
Q 010557 380 SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRV 453 (507)
Q Consensus 380 ~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~ 453 (507)
.++..++.|+|++|.|+.++ .|..+++|++|+|++|.|+.+++..|. .+|+.|+|++|+|+.++. |..+++|+.
T Consensus 27 ~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCE
Confidence 35677899999999999885 799999999999999999999998764 799999999999999864 899999999
Q ss_pred EEccCCCCcccC
Q 010557 454 LDLSYNRIFRIG 465 (507)
Q Consensus 454 LdLS~N~Is~IP 465 (507)
|+|++|.++...
T Consensus 107 L~L~~N~~~c~c 118 (170)
T 3g39_A 107 IWLLNNPWDCAC 118 (170)
T ss_dssp EECCSSCBCTTB
T ss_pred EEeCCCCCCCCc
Confidence 999999987543
No 106
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.14 E-value=1.5e-10 Score=122.55 Aligned_cols=98 Identities=19% Similarity=0.165 Sum_probs=50.8
Q ss_pred CcEEEccCCCCCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCC--cCCCCCCCccEEEccC
Q 010557 385 SAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTI--EGLREMTRLRVLDLSY 458 (507)
Q Consensus 385 Lt~L~LS~N~Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~L--p~L~~L~sL~~LdLS~ 458 (507)
|++|++++|.|+.+ | .|..+++|++|+|++|.|+.+.+..+. .+|+.|+|++|.|+.+ +.+..+++|+.|+|++
T Consensus 83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 162 (606)
T 3t6q_A 83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162 (606)
T ss_dssp CCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS
T ss_pred cCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc
Confidence 45555555555543 2 455555555555555555555443332 4555555555555554 3344455555555555
Q ss_pred CCCcccCC---CCCCCCC--EEEcCCCCC
Q 010557 459 NRIFRIGH---GNILSKP--VFWLSFKLF 482 (507)
Q Consensus 459 N~Is~IP~---~~f~sL~--~L~LS~N~L 482 (507)
|.|+.++. ..+..|+ .|++++|.+
T Consensus 163 n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp SCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred CcccccChhhhhhhcccceeEEecCCCcc
Confidence 55555433 2333444 455555555
No 107
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.13 E-value=1.6e-10 Score=120.24 Aligned_cols=128 Identities=19% Similarity=0.191 Sum_probs=89.0
Q ss_pred chhhhccccCCcEEEccCCCCCCC---C-CCCCCCCCCEEEccCCCCCC-cCCCCCC--CCCcEEECCCCCCCCC-cC-C
Q 010557 375 NSVIRSLNSSSAVAHIAGIGLKAI---P-TISHFSSLRSVNLSNNFIVH-IPTGSMP--KGLHTLNLSRNKINTI-EG-L 445 (507)
Q Consensus 375 ~s~l~~Lp~sLt~L~LS~N~Lt~L---P-~L~~L~sL~~LdLS~N~Is~-Ipp~sf~--~sL~~LdLS~NkLs~L-p~-L 445 (507)
...+..++ .|+.|++++|.|+.+ | .|..+++|++|+|++|.|.. ++...+. .+|+.|+|++|.|++. +. +
T Consensus 341 ~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 341 FENCGHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp TTTCCCCS-SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred hhhhccCC-CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence 34445554 467888888888754 3 47778888888888888887 6655443 6788888888887652 22 3
Q ss_pred CCCCCccEEEccCCCCcccCCC--CCCCCCEEEcCCCCCCCCCC--CCCCCcCCeeeCCCccCC
Q 010557 446 REMTRLRVLDLSYNRIFRIGHG--NILSKPVFWLSFKLFEFLTI--IPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 446 ~~L~sL~~LdLS~N~Is~IP~~--~f~sL~~L~LS~N~Ls~L~~--L~nL~~LscnlIs~n~~~ 505 (507)
. ++|+.|+|++|+|+.||.. .+++|+.|+|++|.|..++. +..+.+|....++.|++.
T Consensus 420 ~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 420 P--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp C--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 2 6788888888888877763 45678888888888855432 677777777777777653
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.13 E-value=7.1e-11 Score=115.91 Aligned_cols=122 Identities=20% Similarity=0.149 Sum_probs=97.5
Q ss_pred cCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCC---cCCCCC---CCCCcEEECCCCCCCCCcC-----CCCCC
Q 010557 383 SSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVH---IPTGSM---PKGLHTLNLSRNKINTIEG-----LREMT 449 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~---Ipp~sf---~~sL~~LdLS~NkLs~Lp~-----L~~L~ 449 (507)
..|++|++++|.|+.++ .|..+++|++|+|++|.+.. ++...+ .++|+.|+|++|.|+.++. +..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 45899999999999776 78999999999999999875 433322 1689999999999998754 46789
Q ss_pred CccEEEccCCCCccc-CC--CCC---CCCCEEEcCCCCCCCC-CCCCCCCcCCeeeCCCccCCC
Q 010557 450 RLRVLDLSYNRIFRI-GH--GNI---LSKPVFWLSFKLFEFL-TIIPNCKRLSCNLYNSKSHSA 506 (507)
Q Consensus 450 sL~~LdLS~N~Is~I-P~--~~f---~sL~~L~LS~N~Ls~L-~~L~nL~~LscnlIs~n~~~~ 506 (507)
+|+.|+|++|+|+.+ |. ..+ ++|+.|+|++|.|..+ ..+ ..+|....+++|.+..
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNRLNR 286 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCCCCS
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCcCCC
Confidence 999999999999987 53 233 5899999999999654 333 3678888888877654
No 109
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=2.8e-10 Score=104.05 Aligned_cols=87 Identities=17% Similarity=0.271 Sum_probs=78.1
Q ss_pred ccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccE
Q 010557 380 SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRV 453 (507)
Q Consensus 380 ~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~ 453 (507)
.++..|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.+++..|. .+|+.|+|++|+|+.++. |..+++|+.
T Consensus 30 ~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 30 GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH 109 (174)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCE
Confidence 35677999999999999885 799999999999999999999998764 799999999999999864 899999999
Q ss_pred EEccCCCCcccCC
Q 010557 454 LDLSYNRIFRIGH 466 (507)
Q Consensus 454 LdLS~N~Is~IP~ 466 (507)
|+|++|.|...+.
T Consensus 110 L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 110 IYLYNNPWDCECR 122 (174)
T ss_dssp EECCSSCBCTTBG
T ss_pred EEeCCCCcccccc
Confidence 9999999986553
No 110
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.12 E-value=5.9e-10 Score=122.12 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=40.8
Q ss_pred cCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEccCCCCc
Q 010557 383 SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIF 462 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N~Is 462 (507)
..|++|+|++|.|+.+|. .+++|++|+|++|.|+.++. ...+|+.|+|++|+|+.+|.. +++|+.|+|++|.|+
T Consensus 81 ~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~--l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLA 154 (622)
T ss_dssp TTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCS
T ss_pred CCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC--CCCCCEEECcCCcCC
Confidence 445666666666666554 44566666666666665554 224555555555555554431 244444444444444
Q ss_pred ccC
Q 010557 463 RIG 465 (507)
Q Consensus 463 ~IP 465 (507)
.+|
T Consensus 155 ~l~ 157 (622)
T 3g06_A 155 SLP 157 (622)
T ss_dssp CCC
T ss_pred CcC
Confidence 443
No 111
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.11 E-value=5.2e-10 Score=122.55 Aligned_cols=119 Identities=18% Similarity=0.134 Sum_probs=96.4
Q ss_pred ccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEccCC
Q 010557 380 SLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYN 459 (507)
Q Consensus 380 ~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N 459 (507)
..+..|+.|++++|.|+.+|.+ +++|+.|+|++|.|+.++.. ..+|+.|+|++|.|+.+| ..+++|+.|+|++|
T Consensus 178 ~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 178 MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP--VLPSELKELMVSGN 251 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC--CCCTTCCEEECCSS
T ss_pred ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCC--CCCCcCcEEECCCC
Confidence 3446678888888888888742 47888888888888888754 268999999999999887 55688999999999
Q ss_pred CCcccCCCCCCCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCccCC
Q 010557 460 RIFRIGHGNILSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 460 ~Is~IP~~~f~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~~~ 505 (507)
.|+.||. .+.+|+.|+|++|.|.. +..+.++++|....+++|.+.
T Consensus 252 ~L~~lp~-~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 252 RLTSLPM-LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCSCCCC-CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred CCCcCCc-ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence 9999988 67789999999999854 456788888888888888754
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.11 E-value=7.6e-11 Score=130.73 Aligned_cols=100 Identities=16% Similarity=0.227 Sum_probs=77.5
Q ss_pred CCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcC-CCCCCCccEEEccCCC
Q 010557 384 SSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNR 460 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~N~ 460 (507)
.|+.|+|++|.|..|| .+..+++|++|+|++|.|+.|+..... .+|+.|+|++|.|+.||. |..|++|+.|+|++|.
T Consensus 225 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 225 LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM 304 (727)
T ss_dssp CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC
T ss_pred CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC
Confidence 4688888888888887 677888888888888888877654322 678888888888888765 7888888888888888
Q ss_pred CcccCCC--CCCCCCEEEcCCCCCC
Q 010557 461 IFRIGHG--NILSKPVFWLSFKLFE 483 (507)
Q Consensus 461 Is~IP~~--~f~sL~~L~LS~N~Ls 483 (507)
|+.||.. .+.+|+.|+|++|.|.
T Consensus 305 l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 305 VTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCccChhhhcCCCccEEeCCCCccC
Confidence 8888763 4457788888888874
No 113
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.11 E-value=4.3e-11 Score=126.08 Aligned_cols=121 Identities=19% Similarity=0.176 Sum_probs=84.4
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCC-c-CCC-CCCCccEEEccC
Q 010557 384 SSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTI-E-GLR-EMTRLRVLDLSY 458 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~L-p-~L~-~L~sL~~LdLS~ 458 (507)
.|+.|++++|.|+.++. ..+++|+.|+|++|.|+.+++..+. ++|+.|+|++|.|+++ + .+. .+++|+.|+|++
T Consensus 100 ~L~~L~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 100 SIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp TCCEEECCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CcCEEECcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 45666666666665551 2356788888888888877665553 6788888888888874 3 243 678888888888
Q ss_pred CCCcccCCC-CCCCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCccCC
Q 010557 459 NRIFRIGHG-NILSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 459 N~Is~IP~~-~f~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~~~ 505 (507)
|.|+.++.. .++.|+.|+|++|.|.. ++.+..+.+|....+++|.+.
T Consensus 179 N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 179 NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp SCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred CccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc
Confidence 888877653 35688888888888844 355667777777777777553
No 114
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.10 E-value=2.4e-10 Score=123.88 Aligned_cols=120 Identities=24% Similarity=0.294 Sum_probs=64.1
Q ss_pred CcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC-C--------CCcEEECCCCCCCCCcC-CC--CCCC
Q 010557 385 SAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP-K--------GLHTLNLSRNKINTIEG-LR--EMTR 450 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~--------sL~~LdLS~NkLs~Lp~-L~--~L~s 450 (507)
|+.|++++|.|+.+| .+..+++|++|+|++|.|+.++...+. . +|+.|+|++|+|+.+|. +. .+++
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 514 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTT
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCC
Confidence 455666666666555 234456666666666666655554443 1 56666666666665543 33 5666
Q ss_pred ccEEEccCCCCcccCC--CCCCCCCEEEcCC------CCC--CCCCCCCCCCcCCeeeCCCccC
Q 010557 451 LRVLDLSYNRIFRIGH--GNILSKPVFWLSF------KLF--EFLTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 451 L~~LdLS~N~Is~IP~--~~f~sL~~L~LS~------N~L--s~L~~L~nL~~LscnlIs~n~~ 504 (507)
|+.|+|++|+|+.+|. ..+..|+.|+|++ |.+ ..+..+.++++|....+++|.+
T Consensus 515 L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 515 LVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 6666666666665554 2334555555532 333 2234444555555555554443
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.09 E-value=1e-10 Score=102.48 Aligned_cols=100 Identities=20% Similarity=0.233 Sum_probs=84.3
Q ss_pred hhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCC--CCCCcEEECCCCCCCCCc---CCCCCCCcc
Q 010557 378 IRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSM--PKGLHTLNLSRNKINTIE---GLREMTRLR 452 (507)
Q Consensus 378 l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf--~~sL~~LdLS~NkLs~Lp---~L~~L~sL~ 452 (507)
+..++ .|+.|++++|.|+.++.+..+++|++|+|++|.|+...+..+ ..+|+.|+|++|.|+.++ .+..+++|+
T Consensus 38 ~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 38 TDEFE-ELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp CTTCT-TCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred HhhcC-CCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence 34554 579999999999988889999999999999999999544333 278999999999999963 489999999
Q ss_pred EEEccCCCCcccCC------CCCCCCCEEEcC
Q 010557 453 VLDLSYNRIFRIGH------GNILSKPVFWLS 478 (507)
Q Consensus 453 ~LdLS~N~Is~IP~------~~f~sL~~L~LS 478 (507)
.|+|++|.|+.++. ..+++|+.|+++
T Consensus 117 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 117 SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999999998876 346688888765
No 116
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.08 E-value=1.5e-10 Score=127.87 Aligned_cols=128 Identities=20% Similarity=0.256 Sum_probs=90.3
Q ss_pred hhhhccccCCcEEEccCCCCC-CCC-CCCCCCCCCEEEccCCCCCC-cCCCC----------------------------
Q 010557 376 SVIRSLNSSSAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVH-IPTGS---------------------------- 424 (507)
Q Consensus 376 s~l~~Lp~sLt~L~LS~N~Lt-~LP-~L~~L~sL~~LdLS~N~Is~-Ipp~s---------------------------- 424 (507)
..+..++ .|++|++++|.++ .+| .+..+++|++|+|++|.+++ +|...
T Consensus 508 ~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (768)
T 3rgz_A 508 KWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586 (768)
T ss_dssp GGGGGCT-TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred hHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence 3455554 4677777777777 566 67777777888877777763 22110
Q ss_pred -----------------------------------------CC--CCCcEEECCCCCCCC-CcC-CCCCCCccEEEccCC
Q 010557 425 -----------------------------------------MP--KGLHTLNLSRNKINT-IEG-LREMTRLRVLDLSYN 459 (507)
Q Consensus 425 -----------------------------------------f~--~sL~~LdLS~NkLs~-Lp~-L~~L~sL~~LdLS~N 459 (507)
+. ..|+.|+|++|+|++ +|. ++.|+.|+.|+|++|
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666 (768)
T ss_dssp CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence 11 357788888888886 554 888888888888888
Q ss_pred CCc-ccCC--CCCCCCCEEEcCCCCC--CCCCCCCCCCcCCeeeCCCccC
Q 010557 460 RIF-RIGH--GNILSKPVFWLSFKLF--EFLTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 460 ~Is-~IP~--~~f~sL~~L~LS~N~L--s~L~~L~nL~~LscnlIs~n~~ 504 (507)
+|+ .||. +.+..|+.|+|++|++ ..+..+.+++.|....+++|.+
T Consensus 667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 888 4664 4566888888888888 4567778888888877777754
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.07 E-value=2.7e-10 Score=123.18 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=92.5
Q ss_pred ccCCccccccchhhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCC-
Q 010557 365 INLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI- 442 (507)
Q Consensus 365 LsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~L- 442 (507)
|.++++.+..++.+..++ .|+.|+|++|.|+.+| .|+.+++|+.|+|++|.|+.++.....++|+.|+|++|.|+++
T Consensus 446 L~Ls~n~l~~lp~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~ 524 (567)
T 1dce_A 446 LHLAHKDLTVLCHLEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA 524 (567)
T ss_dssp EECTTSCCSSCCCGGGGT-TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSS
T ss_pred EEecCCCCCCCcCccccc-cCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCC
Confidence 556666666555577765 5899999999999999 8999999999999999999987322237999999999999998
Q ss_pred -cC-CCCCCCccEEEccCCCCcccCCCC------CCCCCEEEc
Q 010557 443 -EG-LREMTRLRVLDLSYNRIFRIGHGN------ILSKPVFWL 477 (507)
Q Consensus 443 -p~-L~~L~sL~~LdLS~N~Is~IP~~~------f~sL~~L~L 477 (507)
|. +..|++|+.|+|++|.|+.+|... +++|+.|++
T Consensus 525 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 54 999999999999999999987632 567776653
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.07 E-value=1.5e-10 Score=128.46 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=87.5
Q ss_pred ccCCccccc-cchhhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCC
Q 010557 365 INLSEEILH-ANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINT 441 (507)
Q Consensus 365 LsLn~~il~-~~s~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~ 441 (507)
|.|+.+.+. ....+..++ .|+.|+|++|.|+.|| .|..|++|++|+|++|.|+.||..... .+|+.|+|++|.|+.
T Consensus 229 L~Ls~n~l~~l~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 307 (727)
T 4b8c_D 229 LDLSNLQIFNISANIFKYD-FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT 307 (727)
T ss_dssp EECTTSCCSCCCGGGGGCC-SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC
T ss_pred EECCCCCCCCCChhhcCCC-CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc
Confidence 344443333 223445554 4799999999999998 799999999999999999988665433 789999999999999
Q ss_pred CcC-CCCCCCccEEEccCCCCcccCCCCCCC--C--CEEEcCCCCC
Q 010557 442 IEG-LREMTRLRVLDLSYNRIFRIGHGNILS--K--PVFWLSFKLF 482 (507)
Q Consensus 442 Lp~-L~~L~sL~~LdLS~N~Is~IP~~~f~s--L--~~L~LS~N~L 482 (507)
||. |..|++|+.|+|++|.|+.++...+.. + ..|+|+.|.+
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 875 899999999999999998655433321 1 2356777777
No 119
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=8.6e-10 Score=125.41 Aligned_cols=127 Identities=18% Similarity=0.076 Sum_probs=60.7
Q ss_pred hhccccCCcEEEccCCCCCCCC-CCCCCCC--CCEEEccCCCCCCcCCCCC------C-CCCcEEECCCCCCCCCcC--C
Q 010557 378 IRSLNSSSAVAHIAGIGLKAIP-TISHFSS--LRSVNLSNNFIVHIPTGSM------P-KGLHTLNLSRNKINTIEG--L 445 (507)
Q Consensus 378 l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~s--L~~LdLS~N~Is~Ipp~sf------~-~sL~~LdLS~NkLs~Lp~--L 445 (507)
+..++..|+.|+|++|.|+.+| .+..+.. |+.|+|++|.|.+.++... . .+|+.|+|++|.|+.+|. +
T Consensus 614 l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~ 693 (876)
T 4ecn_A 614 FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693 (876)
T ss_dssp SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH
T ss_pred HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHH
Confidence 3333332455555555555555 3333322 4444554444443322111 0 245555555555555443 3
Q ss_pred CCCCCccEEEccCCCCcccCCCCCC----------CCCEEEcCCCCCCC-CCCCC--CCCcCCeeeCCCccC
Q 010557 446 REMTRLRVLDLSYNRIFRIGHGNIL----------SKPVFWLSFKLFEF-LTIIP--NCKRLSCNLYNSKSH 504 (507)
Q Consensus 446 ~~L~sL~~LdLS~N~Is~IP~~~f~----------sL~~L~LS~N~Ls~-L~~L~--nL~~LscnlIs~n~~ 504 (507)
..+++|+.|+|++|+|+.||...+. +|+.|+|++|.|.. +..+. .+++|....+++|.+
T Consensus 694 ~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L 765 (876)
T 4ecn_A 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF 765 (876)
T ss_dssp HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCC
T ss_pred ccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCC
Confidence 3455666666666666655554433 45556666665533 23333 455555555555543
No 120
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.06 E-value=4.5e-10 Score=125.34 Aligned_cols=98 Identities=19% Similarity=0.209 Sum_probs=53.1
Q ss_pred CcEEEccCCC-CCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC-C-cC--CCCCCCccEEE
Q 010557 385 SAVAHIAGIG-LKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT-I-EG--LREMTRLRVLD 455 (507)
Q Consensus 385 Lt~L~LS~N~-Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~-L-p~--L~~L~sL~~Ld 455 (507)
|++|++++|. +..+ | .|..+++|++|+|++|.|..+.+..|. .+|+.|+|++|.|++ + +. +..|++|+.|+
T Consensus 50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 4556666553 2344 2 455666666666666666655554443 456666666666554 2 22 55556666666
Q ss_pred ccCCCCcccCC----CCCCCCCEEEcCCCCC
Q 010557 456 LSYNRIFRIGH----GNILSKPVFWLSFKLF 482 (507)
Q Consensus 456 LS~N~Is~IP~----~~f~sL~~L~LS~N~L 482 (507)
|++|.|+.++. +.+.+|+.|+|++|.|
T Consensus 130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp EESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 66666554432 2344555566666655
No 121
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=3e-10 Score=129.15 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=54.3
Q ss_pred CcEEEccCCCCC-CCC-CCCCCCCCCEEEccCCC-CCC--cCCC------CC--CCCCcEEECCCCCCCCCcC---CCCC
Q 010557 385 SAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNF-IVH--IPTG------SM--PKGLHTLNLSRNKINTIEG---LREM 448 (507)
Q Consensus 385 Lt~L~LS~N~Lt-~LP-~L~~L~sL~~LdLS~N~-Is~--Ipp~------sf--~~sL~~LdLS~NkLs~Lp~---L~~L 448 (507)
|+.|+|++|.+. .+| .|..|++|+.|+|++|. |++ +|.. .+ .++|+.|+|++|.|+.+|. +..+
T Consensus 493 L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L 572 (876)
T 4ecn_A 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM 572 (876)
T ss_dssp CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTC
T ss_pred CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcC
Confidence 444555554433 344 44445555555555554 443 2210 00 0245555555555555443 4555
Q ss_pred CCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCC-CCCCCCCCc-CCeeeCCCcc
Q 010557 449 TRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEF-LTIIPNCKR-LSCNLYNSKS 503 (507)
Q Consensus 449 ~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~-L~~L~nL~~-LscnlIs~n~ 503 (507)
++|+.|+|++|.|+.||. ..+++|+.|+|++|.|.. +..+..+.+ |....++.|.
T Consensus 573 ~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 573 VKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp TTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC
T ss_pred CCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC
Confidence 555555555555555541 122344445555555532 233444444 5554444443
No 122
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.99 E-value=2.8e-09 Score=119.02 Aligned_cols=121 Identities=22% Similarity=0.278 Sum_probs=65.0
Q ss_pred CcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccC
Q 010557 385 SAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSY 458 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~ 458 (507)
|+.|+|++|.|+.++ .|..+++|++|+|++|.|..+.+..|. ++|+.|+|++|.|+.++. |..+++|+.|+|++
T Consensus 292 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp CCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred CCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence 456666666665442 455566666666666666655554443 456666666666655532 55556666666666
Q ss_pred CCCcccCC------------------CCCCCCCEEEcCCCCCCCCCC---CCCCCcCCeeeCCCccCC
Q 010557 459 NRIFRIGH------------------GNILSKPVFWLSFKLFEFLTI---IPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 459 N~Is~IP~------------------~~f~sL~~L~LS~N~Ls~L~~---L~nL~~LscnlIs~n~~~ 505 (507)
|.|+.++. .....++.|+++.|.|..+.. +..+++|....++.|.+.
T Consensus 372 N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 372 NALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp CCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 66555443 012244445555555533321 235566666666666543
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=2.3e-12 Score=118.82 Aligned_cols=123 Identities=23% Similarity=0.313 Sum_probs=99.3
Q ss_pred hhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcCCCCCCCccEEE
Q 010557 377 VIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEGLREMTRLRVLD 455 (507)
Q Consensus 377 ~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~L~~L~sL~~Ld 455 (507)
.+..++ .|+.|++++|.|+.+|.+..+++|++|+|++|.|+.++..... ++|+.|+|++|.|+.++.+..+++|+.|+
T Consensus 43 ~~~~l~-~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~ 121 (198)
T 1ds9_A 43 TLSTLK-ACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY 121 (198)
T ss_dssp HHHHTT-TCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEE
T ss_pred HHhcCC-CCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEE
Confidence 455554 4799999999999999888999999999999999988763322 68999999999999988888889999999
Q ss_pred ccCCCCcccCC----CCCCCCCEEEcCCCCCCC---------------CCCCCCCCcCCeeeCC
Q 010557 456 LSYNRIFRIGH----GNILSKPVFWLSFKLFEF---------------LTIIPNCKRLSCNLYN 500 (507)
Q Consensus 456 LS~N~Is~IP~----~~f~sL~~L~LS~N~Ls~---------------L~~L~nL~~LscnlIs 500 (507)
|++|+|+.++. ..+++|+.|++++|.+.. +..+.+|..|+.+.+.
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~ 185 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD 185 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGT
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccC
Confidence 99999997664 567799999999998822 3445666666655544
No 124
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.98 E-value=8.5e-10 Score=121.89 Aligned_cols=128 Identities=24% Similarity=0.291 Sum_probs=90.7
Q ss_pred hhhhccccCCcEEEccCCCCC-CCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC-CcC-CCCCC
Q 010557 376 SVIRSLNSSSAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT-IEG-LREMT 449 (507)
Q Consensus 376 s~l~~Lp~sLt~L~LS~N~Lt-~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~-Lp~-L~~L~ 449 (507)
..+..++ .|+.|++++|.++ .+| .|..+++|+.|+|++|.+.+..+..+. ++|+.|+|++|.|++ +|. +..++
T Consensus 412 ~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 412 PTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp GGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred HHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence 3455553 4678888888877 556 777788888888888888766555443 678888888888875 443 77788
Q ss_pred CccEEEccCCCCc-ccCC--CCCCCCCEEEcCCCCC--CCCCCCCCCCcCCeeeCCCccC
Q 010557 450 RLRVLDLSYNRIF-RIGH--GNILSKPVFWLSFKLF--EFLTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 450 sL~~LdLS~N~Is-~IP~--~~f~sL~~L~LS~N~L--s~L~~L~nL~~LscnlIs~n~~ 504 (507)
+|+.|+|++|+|+ .+|. +.+++|+.|+|++|.+ ..+..+.++++|....++.|.+
T Consensus 491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 8888888888887 3443 3456778888888887 3466677777777777776643
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.91 E-value=3.2e-09 Score=106.26 Aligned_cols=101 Identities=21% Similarity=0.155 Sum_probs=58.6
Q ss_pred CcEEEccCCCCCCCC--CCCCCCCCCEEEccC-CCCCCcCCCCCC---CCCcEEECCCCCCCCCcC-CCCCCCccEEEcc
Q 010557 385 SAVAHIAGIGLKAIP--TISHFSSLRSVNLSN-NFIVHIPTGSMP---KGLHTLNLSRNKINTIEG-LREMTRLRVLDLS 457 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~-N~Is~Ipp~sf~---~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS 457 (507)
|++|++++|.|+.+| .+.....+..|++.+ |.|..++...|. ..|+.|+|++|.|+.|+. .....+|+.|+++
T Consensus 106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185 (350)
T ss_dssp CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECT
T ss_pred cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhc
Confidence 455555555555444 333344444555432 445555554443 346667777777777653 4445567777775
Q ss_pred -CCCCcccCCCCCC---CCCEEEcCCCCCCCC
Q 010557 458 -YNRIFRIGHGNIL---SKPVFWLSFKLFEFL 485 (507)
Q Consensus 458 -~N~Is~IP~~~f~---sL~~L~LS~N~Ls~L 485 (507)
+|.|+.||.+.|. +|+.|+|++|.|+.+
T Consensus 186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 186 DNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp TCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred cCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 4667777765544 667777777777543
No 126
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.87 E-value=7.1e-09 Score=103.73 Aligned_cols=117 Identities=18% Similarity=0.171 Sum_probs=96.3
Q ss_pred CcEEEccC-CCCCCCC--CCCCCC-CCCEEEccCCCCCCcCCCCCC-CCCcEEECCC-CCCCCCcC--CCCCCCccEEEc
Q 010557 385 SAVAHIAG-IGLKAIP--TISHFS-SLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSR-NKINTIEG--LREMTRLRVLDL 456 (507)
Q Consensus 385 Lt~L~LS~-N~Lt~LP--~L~~L~-sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~-NkLs~Lp~--L~~L~sL~~LdL 456 (507)
+..|++.+ |.|..++ .|..+. .|+.|+|++|.|+.|++..|. .+|+.|++++ |.++.||. |..+++|+.|+|
T Consensus 130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdL 209 (350)
T 4ay9_X 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209 (350)
T ss_dssp CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEEC
T ss_pred hhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhc
Confidence 46777755 6788887 566664 688999999999999998886 6799999974 78999874 899999999999
Q ss_pred cCCCCcccCCCCCCCCCEEEcCC-CCCCCCCCCCCCCcCCeeeCCC
Q 010557 457 SYNRIFRIGHGNILSKPVFWLSF-KLFEFLTIIPNCKRLSCNLYNS 501 (507)
Q Consensus 457 S~N~Is~IP~~~f~sL~~L~LS~-N~Ls~L~~L~nL~~LscnlIs~ 501 (507)
++|+|+.||.+.|.+|+.|.+.. +.+..++.+.++.+|....+.+
T Consensus 210 s~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 210 SRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp TTSCCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred CCCCcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 99999999999999999997655 4567777788888887766654
No 127
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.80 E-value=9.7e-09 Score=101.67 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=70.7
Q ss_pred CCcEEEccC-CCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEc
Q 010557 384 SSAVAHIAG-IGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDL 456 (507)
Q Consensus 384 sLt~L~LS~-N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdL 456 (507)
.|+.|+|++ |.|+.++ .|..|++|+.|+|++|.|+.+++..|. .+|+.|+|++|+|+.+|. |..+. |+.|+|
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 489999996 9999887 699999999999999999999998765 799999999999999864 55555 999999
Q ss_pred cCCCCcc
Q 010557 457 SYNRIFR 463 (507)
Q Consensus 457 S~N~Is~ 463 (507)
.+|.|..
T Consensus 111 ~~N~~~c 117 (347)
T 2ifg_A 111 SGNPLHC 117 (347)
T ss_dssp CSSCCCC
T ss_pred eCCCccC
Confidence 9999874
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.76 E-value=4.5e-11 Score=110.16 Aligned_cols=118 Identities=23% Similarity=0.311 Sum_probs=95.3
Q ss_pred CcEEEccCC--CCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC-CCCCCCccEEEccC
Q 010557 385 SAVAHIAGI--GLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSY 458 (507)
Q Consensus 385 Lt~L~LS~N--~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~ 458 (507)
+..+.+.++ .|+.+| .|..+++|++|+|++|.|+.++ .+. .+|+.|+|++|.|+.+|. +..+++|+.|+|++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 344455443 566777 7889999999999999999987 343 899999999999999987 56678999999999
Q ss_pred CCCcccCC-CCCCCCCEEEcCCCCCCCCC---CCCCCCcCCeeeCCCccC
Q 010557 459 NRIFRIGH-GNILSKPVFWLSFKLFEFLT---IIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 459 N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~---~L~nL~~LscnlIs~n~~ 504 (507)
|.|+.+|. ..++.|+.|+|++|.|..+. .+..+++|....++.|++
T Consensus 103 N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 103 NQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 99998873 23458999999999997643 577888888888887754
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.64 E-value=3.1e-09 Score=106.68 Aligned_cols=123 Identities=15% Similarity=0.217 Sum_probs=65.2
Q ss_pred ccCCcEEEccCCCCCC-----CC-CCCCCC-CCCEEEccCCCCCCcCCCCCC-------CCCcEEECCCCCCCC-----C
Q 010557 382 NSSSAVAHIAGIGLKA-----IP-TISHFS-SLRSVNLSNNFIVHIPTGSMP-------KGLHTLNLSRNKINT-----I 442 (507)
Q Consensus 382 p~sLt~L~LS~N~Lt~-----LP-~L~~L~-sL~~LdLS~N~Is~Ipp~sf~-------~sL~~LdLS~NkLs~-----L 442 (507)
+..|++|++++|.|+. ++ .+..++ +|++|+|++|.|+......+. .+|+.|+|++|.|+. +
T Consensus 137 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l 216 (362)
T 3goz_A 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL 216 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH
Confidence 4456666666666662 22 233333 666666666666655432111 356666666666665 2
Q ss_pred cC-CCC-CCCccEEEccCCCCcccCC-------CCCCCCCEEEcCCCCCCC---------CCCCCCCCcCCeeeCCCccC
Q 010557 443 EG-LRE-MTRLRVLDLSYNRIFRIGH-------GNILSKPVFWLSFKLFEF---------LTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 443 p~-L~~-L~sL~~LdLS~N~Is~IP~-------~~f~sL~~L~LS~N~Ls~---------L~~L~nL~~LscnlIs~n~~ 504 (507)
+. +.. .++|+.|+|++|.|+.++. ..+..|+.|+|++|.+.. ...+.++.+|....+++|.+
T Consensus 217 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 22 333 2466666666666665443 344566666666665311 23445555555555555543
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.54 E-value=1.2e-08 Score=102.26 Aligned_cols=144 Identities=16% Similarity=0.153 Sum_probs=95.6
Q ss_pred cccccCCcccccc--chhhhcc----ccCCcEEEccCCCCCCCC--C----CCCC-CCCCEEEccCCCCCCcCCCCC---
Q 010557 362 RSEINLSEEILHA--NSVIRSL----NSSSAVAHIAGIGLKAIP--T----ISHF-SSLRSVNLSNNFIVHIPTGSM--- 425 (507)
Q Consensus 362 ~ldLsLn~~il~~--~s~l~~L----p~sLt~L~LS~N~Lt~LP--~----L~~L-~sL~~LdLS~N~Is~Ipp~sf--- 425 (507)
+..|.++++.+.. ...+..+ +..|+.|++++|.|+..+ . +..+ ++|++|+|++|.|+.+....+
T Consensus 53 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 132 (362)
T 3goz_A 53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred eeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence 3345555544442 3334333 356889999999988554 2 4445 789999999999888766332
Q ss_pred ----CCCCcEEECCCCCCCCC-----c-CCCCCC-CccEEEccCCCCcccCC-------CCC-CCCCEEEcCCCCCCC--
Q 010557 426 ----PKGLHTLNLSRNKINTI-----E-GLREMT-RLRVLDLSYNRIFRIGH-------GNI-LSKPVFWLSFKLFEF-- 484 (507)
Q Consensus 426 ----~~sL~~LdLS~NkLs~L-----p-~L~~L~-sL~~LdLS~N~Is~IP~-------~~f-~sL~~L~LS~N~Ls~-- 484 (507)
..+|+.|+|++|.|+.. + .+..++ +|+.|+|++|.|+.... ..+ .+|+.|+|++|.|..
T Consensus 133 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~ 212 (362)
T 3goz_A 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS 212 (362)
T ss_dssp HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence 24799999999988852 2 244554 89999999999886553 123 488999999998844
Q ss_pred ----CCCCCC-CCcCCeeeCCCccCC
Q 010557 485 ----LTIIPN-CKRLSCNLYNSKSHS 505 (507)
Q Consensus 485 ----L~~L~n-L~~LscnlIs~n~~~ 505 (507)
...+.. .++|....+++|.+.
T Consensus 213 ~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 213 YAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCC
Confidence 223333 346777777777654
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.47 E-value=9.8e-09 Score=103.30 Aligned_cols=144 Identities=17% Similarity=0.166 Sum_probs=96.7
Q ss_pred ccccccCCcccccc------chhhhccccCCcEEEccCCCCCCC-----C-CCCCC---------CCCCEEEccCCCCCC
Q 010557 361 RRSEINLSEEILHA------NSVIRSLNSSSAVAHIAGIGLKAI-----P-TISHF---------SSLRSVNLSNNFIVH 419 (507)
Q Consensus 361 ~~ldLsLn~~il~~------~s~l~~Lp~sLt~L~LS~N~Lt~L-----P-~L~~L---------~sL~~LdLS~N~Is~ 419 (507)
.+..|.++.+.+.. ...+..+ ..|++|+|++|.|+.. + .+..+ ++|++|+|++|.|+.
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhC-CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 33445555544443 1233444 3578999999988732 2 23333 899999999998872
Q ss_pred --cCC--CCCC--CCCcEEECCCCCCCC------Cc-CCCCCCCccEEEccCCCCc-----ccCC--CCCCCCCEEEcCC
Q 010557 420 --IPT--GSMP--KGLHTLNLSRNKINT------IE-GLREMTRLRVLDLSYNRIF-----RIGH--GNILSKPVFWLSF 479 (507)
Q Consensus 420 --Ipp--~sf~--~sL~~LdLS~NkLs~------Lp-~L~~L~sL~~LdLS~N~Is-----~IP~--~~f~sL~~L~LS~ 479 (507)
++. ..+. ++|+.|+|++|.|+. ++ .+..+++|+.|+|++|.|+ .++. ..+++|+.|+|++
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 321 1111 589999999999982 35 5888899999999999994 3443 4567899999999
Q ss_pred CCCCCC------CCC--CCCCcCCeeeCCCccCC
Q 010557 480 KLFEFL------TII--PNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 480 N~Ls~L------~~L--~nL~~LscnlIs~n~~~ 505 (507)
|.|... ..+ +.+.+|....+++|.+.
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 988432 333 44777888777777653
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.44 E-value=1.8e-08 Score=101.29 Aligned_cols=123 Identities=18% Similarity=0.160 Sum_probs=96.1
Q ss_pred cCCcEEEccCCCCC--CCC----CCCCCCCCCEEEccCCCCCC-----cCCCCCC--CCCcEEECCCCCCC-----CCcC
Q 010557 383 SSSAVAHIAGIGLK--AIP----TISHFSSLRSVNLSNNFIVH-----IPTGSMP--KGLHTLNLSRNKIN-----TIEG 444 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt--~LP----~L~~L~sL~~LdLS~N~Is~-----Ipp~sf~--~sL~~LdLS~NkLs-----~Lp~ 444 (507)
..|+.|++++|.|+ .++ .|..+++|+.|+|++|.|+. +.+..+. ++|+.|+|++|.|+ .++.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 46899999999997 344 46678999999999999982 2222222 78999999999995 3443
Q ss_pred -CCCCCCccEEEccCCCCccc-----CC----CCCCCCCEEEcCCCCCCC------CCCC-CCCCcCCeeeCCCccCC
Q 010557 445 -LREMTRLRVLDLSYNRIFRI-----GH----GNILSKPVFWLSFKLFEF------LTII-PNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 445 -L~~L~sL~~LdLS~N~Is~I-----P~----~~f~sL~~L~LS~N~Ls~------L~~L-~nL~~LscnlIs~n~~~ 505 (507)
+..+++|+.|+|++|.|+.. +. +.+++|+.|+|++|.|.. +..+ .++++|....+++|.+.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 88899999999999999864 33 347899999999999954 3344 55788888888888764
No 133
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.43 E-value=1.6e-08 Score=98.77 Aligned_cols=53 Identities=23% Similarity=0.124 Sum_probs=23.5
Q ss_pred CCcEEECCCC--CCCC--CcC-CCCCCCccEEEccCCC-Ccc-cCC--CCCCCCCEEEcCCC
Q 010557 428 GLHTLNLSRN--KINT--IEG-LREMTRLRVLDLSYNR-IFR-IGH--GNILSKPVFWLSFK 480 (507)
Q Consensus 428 sL~~LdLS~N--kLs~--Lp~-L~~L~sL~~LdLS~N~-Is~-IP~--~~f~sL~~L~LS~N 480 (507)
+|+.|+|++| .++. ++. +..+++|+.|+|++|. ++. .+. ..+++|+.|+|++|
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 4555555555 2321 222 3345555555555555 332 111 23345555555555
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.38 E-value=2e-06 Score=85.11 Aligned_cols=93 Identities=20% Similarity=0.229 Sum_probs=59.1
Q ss_pred CCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCcc-EEEccCCCCcccCCCCCC---CCCEE
Q 010557 404 FSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLR-VLDLSYNRIFRIGHGNIL---SKPVF 475 (507)
Q Consensus 404 L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~-~LdLS~N~Is~IP~~~f~---sL~~L 475 (507)
+++|+.|+|++|.|+.|+..+|. .+|+.|+|++| |+.|+. |..|.+|+ .|+|.. .++.|+...|. +|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 45677777777777777776665 56777777776 666643 67777777 777766 66667666554 45566
Q ss_pred EcCCCCCCCC--CCCCCCCcCCeee
Q 010557 476 WLSFKLFEFL--TIIPNCKRLSCNL 498 (507)
Q Consensus 476 ~LS~N~Ls~L--~~L~nL~~Lscnl 498 (507)
+++.|.+..+ ..+.+|.+|...+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 6666666443 3455555555443
No 135
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.37 E-value=3.3e-08 Score=96.60 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=83.4
Q ss_pred cCCcEEEccCCCCCC--CC-CCCCCCCCCEEEccCCCCCCcCCCCC--CCCCcEEECCCC-CCCC--CcC-CCCCCCccE
Q 010557 383 SSSAVAHIAGIGLKA--IP-TISHFSSLRSVNLSNNFIVHIPTGSM--PKGLHTLNLSRN-KINT--IEG-LREMTRLRV 453 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt~--LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf--~~sL~~LdLS~N-kLs~--Lp~-L~~L~sL~~ 453 (507)
..|+.|++++|.++. ++ .+..+++|++|+|++|.++...+..+ .++|+.|+|++| .++. ++. +..+++|+.
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 357888888888873 56 67788888888888888775333222 267888888888 6774 444 677888888
Q ss_pred EEccCC-CCcc--cCC--CCCC-CCCEEEcCCCC--CC---CCCCCCCCCcCCeeeCCCcc
Q 010557 454 LDLSYN-RIFR--IGH--GNIL-SKPVFWLSFKL--FE---FLTIIPNCKRLSCNLYNSKS 503 (507)
Q Consensus 454 LdLS~N-~Is~--IP~--~~f~-sL~~L~LS~N~--Ls---~L~~L~nL~~LscnlIs~n~ 503 (507)
|+|++| .|+. ++. ..++ +|+.|+|++|. +. .+..+..+++|....++.+.
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 888888 8874 332 4566 88888888884 32 12334456666666666654
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=1.3e-06 Score=86.39 Aligned_cols=93 Identities=19% Similarity=0.234 Sum_probs=82.5
Q ss_pred ccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCc-EEECCCCCCCCCcC--CCCCCCccEE
Q 010557 382 NSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLH-TLNLSRNKINTIEG--LREMTRLRVL 454 (507)
Q Consensus 382 p~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~-~LdLS~NkLs~Lp~--L~~L~sL~~L 454 (507)
...|+.|+|++|+++.|+ .|..+.+|+.|+|++| |+.|+..+|. .+|+ .++|.+ .++.|+. |..|++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 356899999999999998 7999999999999998 9999999997 6799 999999 8888853 9999999999
Q ss_pred EccCCCCcccCCCCCC---CCCEEE
Q 010557 455 DLSYNRIFRIGHGNIL---SKPVFW 476 (507)
Q Consensus 455 dLS~N~Is~IP~~~f~---sL~~L~ 476 (507)
+|+.|.|+.|+...|. +|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 9999999999998887 445554
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.33 E-value=2.7e-08 Score=101.22 Aligned_cols=78 Identities=22% Similarity=0.291 Sum_probs=38.1
Q ss_pred CcEEEccCCCCC-----CCC-CCCCCCCCCEEEccCCCCCCcCCC----CCC---CCCcEEECCCCCCCC-----Cc-CC
Q 010557 385 SAVAHIAGIGLK-----AIP-TISHFSSLRSVNLSNNFIVHIPTG----SMP---KGLHTLNLSRNKINT-----IE-GL 445 (507)
Q Consensus 385 Lt~L~LS~N~Lt-----~LP-~L~~L~sL~~LdLS~N~Is~Ipp~----sf~---~sL~~LdLS~NkLs~-----Lp-~L 445 (507)
|+.|++++|.|+ .++ .+..+++|++|+|++|.|...... .+. .+|+.|+|++|.|+. ++ .+
T Consensus 30 L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l 109 (461)
T 1z7x_W 30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL 109 (461)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHT
T ss_pred ccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHH
Confidence 455555555555 223 344555555555555555442110 011 145555555555553 12 25
Q ss_pred CCCCCccEEEccCCCCc
Q 010557 446 REMTRLRVLDLSYNRIF 462 (507)
Q Consensus 446 ~~L~sL~~LdLS~N~Is 462 (507)
..+++|+.|+|++|.|+
T Consensus 110 ~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 110 RTLPTLQELHLSDNLLG 126 (461)
T ss_dssp TSCTTCCEEECCSSBCH
T ss_pred ccCCceeEEECCCCcCc
Confidence 55555555555555554
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.26 E-value=1.8e-08 Score=102.58 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=57.3
Q ss_pred CCcEEEccCCCCCC-----CC-CCCCCCCCCEEEccCCCCCCcCCCC-----C--CCCCcEEECCCCCCCCC-----c-C
Q 010557 384 SSAVAHIAGIGLKA-----IP-TISHFSSLRSVNLSNNFIVHIPTGS-----M--PKGLHTLNLSRNKINTI-----E-G 444 (507)
Q Consensus 384 sLt~L~LS~N~Lt~-----LP-~L~~L~sL~~LdLS~N~Is~Ipp~s-----f--~~sL~~LdLS~NkLs~L-----p-~ 444 (507)
.|++|++++|.|+. ++ .|..+++|++|+|++|.|....... + ..+|+.|+|++|.|+.. + .
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 46777777777762 34 5677777777777777765422211 1 13577777777766652 1 1
Q ss_pred CCCCCCccEEEccCCCCcccCCC--------CCCCCCEEEcCCCCCC
Q 010557 445 LREMTRLRVLDLSYNRIFRIGHG--------NILSKPVFWLSFKLFE 483 (507)
Q Consensus 445 L~~L~sL~~LdLS~N~Is~IP~~--------~f~sL~~L~LS~N~Ls 483 (507)
+..+++|+.|+|++|.|+..... ..+.|+.|+|++|.+.
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 44556666666666666542211 1235555666665553
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.99 E-value=2.5e-07 Score=94.77 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=63.2
Q ss_pred CCcEEEccCCCCCCCC--CC-----CCCCCCCEEEccCCCCCCcCCCCC------CCCCcEEECCCCCCCCC-----c-C
Q 010557 384 SSAVAHIAGIGLKAIP--TI-----SHFSSLRSVNLSNNFIVHIPTGSM------PKGLHTLNLSRNKINTI-----E-G 444 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP--~L-----~~L~sL~~LdLS~N~Is~Ipp~sf------~~sL~~LdLS~NkLs~L-----p-~ 444 (507)
.|+.|+|++|.|+... .| ...++|+.|+|++|.|+......+ .++|+.|+|++|.|+.. . .
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 4677788888776432 22 345778888888887765222111 15678888888877652 1 2
Q ss_pred CCCCCCccEEEccCCCCcccCC-------CCCCCCCEEEcCCCCC
Q 010557 445 LREMTRLRVLDLSYNRIFRIGH-------GNILSKPVFWLSFKLF 482 (507)
Q Consensus 445 L~~L~sL~~LdLS~N~Is~IP~-------~~f~sL~~L~LS~N~L 482 (507)
+..++.|+.|+|++|.|+.... ...+.|+.|+|++|.|
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 5666678888888888775432 1235777888888877
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.92 E-value=2.5e-07 Score=94.81 Aligned_cols=123 Identities=15% Similarity=0.054 Sum_probs=88.5
Q ss_pred cCCcEEEccCCCCCCC--C-CCCCCCCCCEEEccCCCCCCcCCCCC-------CCCCcEEECCCCCCCCC-----c-CCC
Q 010557 383 SSSAVAHIAGIGLKAI--P-TISHFSSLRSVNLSNNFIVHIPTGSM-------PKGLHTLNLSRNKINTI-----E-GLR 446 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt~L--P-~L~~L~sL~~LdLS~N~Is~Ipp~sf-------~~sL~~LdLS~NkLs~L-----p-~L~ 446 (507)
..|+.|+|++|.|+.. . -...+.+|+.|+|++|.|+......+ ..+|+.|+|++|.|+.. . .+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 5688999999998742 2 23456789999999999876433221 15799999999998762 2 257
Q ss_pred CCCCccEEEccCCCCcccCC-------CCCCCCCEEEcCCCCCCC------CCCCCCCCcCCeeeCCCccCC
Q 010557 447 EMTRLRVLDLSYNRIFRIGH-------GNILSKPVFWLSFKLFEF------LTIIPNCKRLSCNLYNSKSHS 505 (507)
Q Consensus 447 ~L~sL~~LdLS~N~Is~IP~-------~~f~sL~~L~LS~N~Ls~------L~~L~nL~~LscnlIs~n~~~ 505 (507)
.++.|+.|+|++|.|+.... .....|+.|+|++|.|.. ...+..+++|....+++|.+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 78899999999999985431 234589999999999843 233445667777778877653
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.66 E-value=5e-06 Score=76.56 Aligned_cols=101 Identities=13% Similarity=0.103 Sum_probs=74.7
Q ss_pred ccCCcEEEccCC-CCCC-----CC-CCCCCCCCCEEEccCCCCCCcCCCC----CC--CCCcEEECCCCCCCC-----C-
Q 010557 382 NSSSAVAHIAGI-GLKA-----IP-TISHFSSLRSVNLSNNFIVHIPTGS----MP--KGLHTLNLSRNKINT-----I- 442 (507)
Q Consensus 382 p~sLt~L~LS~N-~Lt~-----LP-~L~~L~sL~~LdLS~N~Is~Ipp~s----f~--~sL~~LdLS~NkLs~-----L- 442 (507)
...|+.|+|++| .|.. +. .+...++|++|+|++|.|..-.... +. .+|+.|+|++|.|.. +
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 345789999999 8873 22 5677889999999999987522111 11 579999999999986 2
Q ss_pred cCCCCCCCccEEEc--cCCCCcccCC-------CCCCCCCEEEcCCCCC
Q 010557 443 EGLREMTRLRVLDL--SYNRIFRIGH-------GNILSKPVFWLSFKLF 482 (507)
Q Consensus 443 p~L~~L~sL~~LdL--S~N~Is~IP~-------~~f~sL~~L~LS~N~L 482 (507)
..+...+.|+.|+| ++|.|+.-.. .....|+.|+|++|.|
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 24777788999999 8899985322 2235789999999877
No 142
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.62 E-value=3e-05 Score=76.98 Aligned_cols=76 Identities=25% Similarity=0.273 Sum_probs=54.1
Q ss_pred EEccCCCCCCCC-----CCCCCCCCCEEEccCCCCCCcCCCC--C--CCCCcEEECCCCCCCCCcCCCCCC--CccEEEc
Q 010557 388 AHIAGIGLKAIP-----TISHFSSLRSVNLSNNFIVHIPTGS--M--PKGLHTLNLSRNKINTIEGLREMT--RLRVLDL 456 (507)
Q Consensus 388 L~LS~N~Lt~LP-----~L~~L~sL~~LdLS~N~Is~Ipp~s--f--~~sL~~LdLS~NkLs~Lp~L~~L~--sL~~LdL 456 (507)
++++.|.+..++ ....+++|+.|+|++|.|+.+.... + .++|+.|+|++|+|+++..+..+. .|+.|+|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L 227 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 227 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEEC
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEc
Confidence 566667554433 1246788999999999998876422 1 268999999999998875444343 8889999
Q ss_pred cCCCCcc
Q 010557 457 SYNRIFR 463 (507)
Q Consensus 457 S~N~Is~ 463 (507)
++|.|+.
T Consensus 228 ~~Npl~~ 234 (267)
T 3rw6_A 228 DGNSLCD 234 (267)
T ss_dssp TTSTTGG
T ss_pred cCCcCcc
Confidence 9998874
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.59 E-value=0.00024 Score=73.36 Aligned_cols=72 Identities=14% Similarity=0.285 Sum_probs=37.7
Q ss_pred CcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcC--CCCCCCccEEEccC
Q 010557 385 SAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSY 458 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~ 458 (507)
|+.+.|.. .++.|+ .|..+.+|+.|+|++|.|+.|+...|. .+|+.+.|..| ++.|+. |..|.+|+.+.|..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 45555553 455554 555555666666655555555555554 45555555532 444432 55555555555543
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.52 E-value=0.0006 Score=70.44 Aligned_cols=99 Identities=12% Similarity=0.080 Sum_probs=78.5
Q ss_pred cCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCC-----CcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCc
Q 010557 383 SSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIV-----HIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRL 451 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is-----~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL 451 (507)
..|+.+.| .+.++.|+ .|..+.+|+.|.|.+|.+. .|+..+|. .+|+.+.|. |.++.|+. |..|++|
T Consensus 248 ~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC
T ss_pred CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc
Confidence 35788888 46688786 8899999999999888776 68888886 689999998 45887753 8889999
Q ss_pred cEEEccCCCCcccCCCCCC--CCCEEEcCCCCCCC
Q 010557 452 RVLDLSYNRIFRIGHGNIL--SKPVFWLSFKLFEF 484 (507)
Q Consensus 452 ~~LdLS~N~Is~IP~~~f~--sL~~L~LS~N~Ls~ 484 (507)
+.|.|..| ++.|+...|. +|+.+.+..|.+..
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNTGIKEVKVEGTTPPQ 359 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSSCCCEEEECCSSCCB
T ss_pred cEEEECcc-ccEEcHHhCCCCCCCEEEEcCCCCcc
Confidence 99999554 8888887665 77888998887744
No 145
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.40 E-value=7.9e-05 Score=73.92 Aligned_cols=98 Identities=19% Similarity=0.254 Sum_probs=69.7
Q ss_pred CCCCCCCCE--EEccCCCCCCcCC------CCCCCCCcEEECCCCCCCCCcCC----CCCCCccEEEccCCCCcccCC-C
Q 010557 401 ISHFSSLRS--VNLSNNFIVHIPT------GSMPKGLHTLNLSRNKINTIEGL----REMTRLRVLDLSYNRIFRIGH-G 467 (507)
Q Consensus 401 L~~L~sL~~--LdLS~N~Is~Ipp------~sf~~sL~~LdLS~NkLs~Lp~L----~~L~sL~~LdLS~N~Is~IP~-~ 467 (507)
|...+.|.. ++++.|.+..++. ..+ ++|+.|+|++|+|++++++ ..+++|+.|+|++|+|+.+.. .
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l-~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENI-PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHC-TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhC-CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh
Confidence 444455554 5677786554432 112 5899999999999998653 479999999999999998743 3
Q ss_pred CCC--CCCEEEcCCCCCCC------------CCCCCCCCcCCeeeC
Q 010557 468 NIL--SKPVFWLSFKLFEF------------LTIIPNCKRLSCNLY 499 (507)
Q Consensus 468 ~f~--sL~~L~LS~N~Ls~------------L~~L~nL~~LscnlI 499 (507)
.+. .|+.|+|++|.+.. +..+++|..|+...+
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL 261 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCC
Confidence 333 89999999999953 345666666665444
No 146
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.21 E-value=3.1e-05 Score=81.20 Aligned_cols=120 Identities=10% Similarity=-0.041 Sum_probs=73.9
Q ss_pred CCcEEEccCCCCCCC-----C-CCCCCCCCCEEEccCCCCCCcCCCCCC------CCCcEEECCCCCCCCCcC-CCCCCC
Q 010557 384 SSAVAHIAGIGLKAI-----P-TISHFSSLRSVNLSNNFIVHIPTGSMP------KGLHTLNLSRNKINTIEG-LREMTR 450 (507)
Q Consensus 384 sLt~L~LS~N~Lt~L-----P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~------~sL~~LdLS~NkLs~Lp~-L~~L~s 450 (507)
.|++|+|++|.++.. + .+..+++|+.|+|++|.++.+....+. ++|+.|+|++|.+.+++. +..+++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~ 244 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN 244 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhH
Confidence 468888888876532 2 234567888888888887754432211 578888888887777654 667778
Q ss_pred ccEEEccCCCCc-c---c--CCCCCCCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCcc
Q 010557 451 LRVLDLSYNRIF-R---I--GHGNILSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKS 503 (507)
Q Consensus 451 L~~LdLS~N~Is-~---I--P~~~f~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~ 503 (507)
|+.|+++.+... . + ....+.+|+.|.++.+.... +..+..+++|....++.+.
T Consensus 245 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred HHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 888888743221 1 1 11344577778777754432 3344556667666666554
No 147
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.98 E-value=0.0012 Score=58.20 Aligned_cols=51 Identities=22% Similarity=0.382 Sum_probs=26.5
Q ss_pred EEEccCCCCC--CCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCC
Q 010557 387 VAHIAGIGLK--AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKI 439 (507)
Q Consensus 387 ~L~LS~N~Lt--~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkL 439 (507)
.++.++++|+ .+| .|. .+|+.|+|++|.|+.|+...|. .+|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555556655 555 322 2455555555555555555443 4455555555544
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.93 E-value=0.00016 Score=75.74 Aligned_cols=118 Identities=19% Similarity=0.064 Sum_probs=83.0
Q ss_pred cCCcEEEccCCCCCCC-----C-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCC-C---C-cCCCCCCC
Q 010557 383 SSSAVAHIAGIGLKAI-----P-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKIN-T---I-EGLREMTR 450 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt~L-----P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs-~---L-p~L~~L~s 450 (507)
..|+.|++++|.++.+ + .+..+++|+.|+|++|.+..++..... ++|+.|+++.+... . . ..+..+++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 3589999999999733 3 356789999999999998887642211 78999999864322 1 1 24778899
Q ss_pred ccEEEccCCCCcccCC--CCCCCCCEEEcCCCCCCC--C-CCCCCCCcCCeeeCC
Q 010557 451 LRVLDLSYNRIFRIGH--GNILSKPVFWLSFKLFEF--L-TIIPNCKRLSCNLYN 500 (507)
Q Consensus 451 L~~LdLS~N~Is~IP~--~~f~sL~~L~LS~N~Ls~--L-~~L~nL~~LscnlIs 500 (507)
|+.|+++++....++. ..+++|+.|+|++|.+.. + ..+..+++|....+.
T Consensus 272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred ccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 9999999876666665 346699999999998732 1 223455555554443
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.90 E-value=3.9e-05 Score=70.54 Aligned_cols=104 Identities=16% Similarity=0.099 Sum_probs=74.5
Q ss_pred CCCCCCCCEEEccCC-CCCCcCC----CCC--CCCCcEEECCCCCCCC-----C-cCCCCCCCccEEEccCCCCcccCC-
Q 010557 401 ISHFSSLRSVNLSNN-FIVHIPT----GSM--PKGLHTLNLSRNKINT-----I-EGLREMTRLRVLDLSYNRIFRIGH- 466 (507)
Q Consensus 401 L~~L~sL~~LdLS~N-~Is~Ipp----~sf--~~sL~~LdLS~NkLs~-----L-p~L~~L~sL~~LdLS~N~Is~IP~- 466 (507)
+...+.|+.|+|++| .|..-.. ..+ .++|+.|+|++|.|.. + ..+...+.|+.|+|++|.|+.-..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 566789999999999 8875211 111 1689999999999986 2 136667889999999999986321
Q ss_pred ------CCCCCCCEEEc--CCCCCCC------CCCCCCCCcCCeeeCCCccC
Q 010557 467 ------GNILSKPVFWL--SFKLFEF------LTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 467 ------~~f~sL~~L~L--S~N~Ls~------L~~L~nL~~LscnlIs~n~~ 504 (507)
.....|+.|+| +.|.|.. ...+...++|....+++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 23458999999 8899832 23444556677777777653
No 150
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.60 E-value=0.0038 Score=54.85 Aligned_cols=54 Identities=22% Similarity=0.304 Sum_probs=42.2
Q ss_pred CEEEccCCCCC--CcCCCCCCCCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCCc
Q 010557 408 RSVNLSNNFIV--HIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIF 462 (507)
Q Consensus 408 ~~LdLS~N~Is--~Ipp~sf~~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~Is 462 (507)
..++.+++.++ .||.. ++.+|+.|+|++|+|+.|+. |..+++|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47788888888 77765 44678888888888888864 778888888888888764
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.58 E-value=0.00063 Score=69.71 Aligned_cols=98 Identities=13% Similarity=0.151 Sum_probs=53.4
Q ss_pred CCcEEEccCCCCCC--CCCC--CCCCCCCEEEccC--CC------CCCcCC----CCCCCCCcEEECCCCCCCCC-----
Q 010557 384 SSAVAHIAGIGLKA--IPTI--SHFSSLRSVNLSN--NF------IVHIPT----GSMPKGLHTLNLSRNKINTI----- 442 (507)
Q Consensus 384 sLt~L~LS~N~Lt~--LP~L--~~L~sL~~LdLS~--N~------Is~Ipp----~sf~~sL~~LdLS~NkLs~L----- 442 (507)
+|+.|.|..|.|+. +..+ ..+++|+.|+|+. |. +..+.+ ..+ ++|+.|+|.+|.|...
T Consensus 194 ~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~-p~Lr~L~L~~~~i~~~~~~~l 272 (362)
T 2ra8_A 194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF-PNLKWLGIVDAEEQNVVVEMF 272 (362)
T ss_dssp TCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTC-TTCCEEEEESCTTHHHHHHHH
T ss_pred CCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCC-CCcCEEeCCCCCCchHHHHHH
Confidence 46777777666652 1122 2567777777642 11 111111 112 4677777777776531
Q ss_pred cCCCCCCCccEEEccCCCCcc-----cCC--CCCCCCCEEEcCCCCC
Q 010557 443 EGLREMTRLRVLDLSYNRIFR-----IGH--GNILSKPVFWLSFKLF 482 (507)
Q Consensus 443 p~L~~L~sL~~LdLS~N~Is~-----IP~--~~f~sL~~L~LS~N~L 482 (507)
.....+++|+.|+|+.|.|+. |.. ..++.|+.|+|+.|.|
T Consensus 273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 112345677777777777764 222 2345677777777766
No 152
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.46 E-value=0.00022 Score=74.67 Aligned_cols=98 Identities=14% Similarity=0.158 Sum_probs=57.7
Q ss_pred CCcEEEcc--C----CCCCCCCC-------CCCCCCCCEEEccCCCCCCcCCCCC---CCCCcEEECCCCCCCCC--cCC
Q 010557 384 SSAVAHIA--G----IGLKAIPT-------ISHFSSLRSVNLSNNFIVHIPTGSM---PKGLHTLNLSRNKINTI--EGL 445 (507)
Q Consensus 384 sLt~L~LS--~----N~Lt~LP~-------L~~L~sL~~LdLS~N~Is~Ipp~sf---~~sL~~LdLS~NkLs~L--p~L 445 (507)
.|+.|+++ + |.++..|. +..+++|+.|+|++ .++......+ .++|+.|+|++|.++.. ..+
T Consensus 398 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l 476 (594)
T 2p1m_B 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV 476 (594)
T ss_dssp TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH
T ss_pred CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH
Confidence 46777777 3 45554431 45567777777765 4433211111 25677777777777542 222
Q ss_pred -CCCCCccEEEccCCCCcccCC----CCCCCCCEEEcCCCCC
Q 010557 446 -REMTRLRVLDLSYNRIFRIGH----GNILSKPVFWLSFKLF 482 (507)
Q Consensus 446 -~~L~sL~~LdLS~N~Is~IP~----~~f~sL~~L~LS~N~L 482 (507)
..+++|+.|+|++|.++.... ..+++|+.|+|++|.+
T Consensus 477 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 456777777777777753221 2345777777777766
No 153
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.25 E-value=0.00038 Score=72.89 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=37.5
Q ss_pred ccccCCcEEEccCCCCCC-----CC-CCCCCCCCCEEEccCCCCCCcCCCCC------CCCCcEEECCCC
Q 010557 380 SLNSSSAVAHIAGIGLKA-----IP-TISHFSSLRSVNLSNNFIVHIPTGSM------PKGLHTLNLSRN 437 (507)
Q Consensus 380 ~Lp~sLt~L~LS~N~Lt~-----LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf------~~sL~~LdLS~N 437 (507)
.++ .|++|++++|.++. ++ ....+++|+.|+|++|. ..+....+ .++|+.|+|++|
T Consensus 154 ~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 154 TCR-NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp HCT-TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred hCC-CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 444 57999999988664 33 23477899999999887 32322111 167888888887
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.66 E-value=0.021 Score=57.66 Aligned_cols=93 Identities=13% Similarity=0.200 Sum_probs=55.0
Q ss_pred CcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCCccEEEccC
Q 010557 385 SAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSY 458 (507)
Q Consensus 385 Lt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~sL~~LdLS~ 458 (507)
|+.+.+..+ +..+. .|..+..|+.+.+. +.++.|+..+|. .+|+.++|..+ ++.|. .|..|.+|+.+.|..
T Consensus 267 L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 267 LASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS 343 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred ccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence 445555433 23343 56666777777764 456666666665 56777777643 55553 266777777777754
Q ss_pred CCCcccCCCCCC---CCCEEEcCCCC
Q 010557 459 NRIFRIGHGNIL---SKPVFWLSFKL 481 (507)
Q Consensus 459 N~Is~IP~~~f~---sL~~L~LS~N~ 481 (507)
+ ++.|+...|. +|+.+.+..|.
T Consensus 344 s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 344 S-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp T-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred c-cCEEhHhHhhCCCCCCEEEECCce
Confidence 3 6666665443 56666666654
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.65 E-value=0.0036 Score=59.60 Aligned_cols=101 Identities=13% Similarity=0.136 Sum_probs=69.2
Q ss_pred ccCCcEEEccCC-CCCC-----CC-CCCCCCCCCEEEccCCCCCCcCCCCCC------CCCcEEECCCCCCCC-----C-
Q 010557 382 NSSSAVAHIAGI-GLKA-----IP-TISHFSSLRSVNLSNNFIVHIPTGSMP------KGLHTLNLSRNKINT-----I- 442 (507)
Q Consensus 382 p~sLt~L~LS~N-~Lt~-----LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~------~sL~~LdLS~NkLs~-----L- 442 (507)
...|+.|+|++| .|.. |- .+..-+.|+.|+|++|.|.......+. +.|+.|+|+.|.|.. |
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 445788899885 7762 22 466678999999999998864433332 679999999999986 2
Q ss_pred cCCCCCCCccEEEccCCCCcccCC----------CCCCCCCEEEcCCCCC
Q 010557 443 EGLREMTRLRVLDLSYNRIFRIGH----------GNILSKPVFWLSFKLF 482 (507)
Q Consensus 443 p~L~~L~sL~~LdLS~N~Is~IP~----------~~f~sL~~L~LS~N~L 482 (507)
..+..-+.|+.|+|++|....|.. ..-..|+.|+|+.|.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 236666779999998654322221 1223677788877754
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.58 E-value=0.11 Score=51.63 Aligned_cols=94 Identities=13% Similarity=0.158 Sum_probs=70.4
Q ss_pred CCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEcc
Q 010557 384 SSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLS 457 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS 457 (507)
.|+.+.+..+ ++.|. .|..+.+|+.+.+..+ +..+....|. .+|+.+.+.++.++.|+. |..|.+|+.+.|.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 3567777654 67665 7788888998888654 7778887776 689999998888888753 8888899999886
Q ss_pred CCCCcccCCCCCC---CCCEEEcCCC
Q 010557 458 YNRIFRIGHGNIL---SKPVFWLSFK 480 (507)
Q Consensus 458 ~N~Is~IP~~~f~---sL~~L~LS~N 480 (507)
.+ ++.|+...|. +|+.+.+..+
T Consensus 319 ~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 319 TA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 54 8888887775 5666665443
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.57 E-value=0.037 Score=55.08 Aligned_cols=85 Identities=19% Similarity=0.251 Sum_probs=68.4
Q ss_pred CCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCCccEEEcc
Q 010557 384 SSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLS 457 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~sL~~LdLS 457 (507)
.|+.+.+. +.++.++ .|..+.+|+.+.+.++.++.|...+|. .+|+.+.|..+ ++.|. .|.+|.+|+.+.|.
T Consensus 264 ~l~~i~l~-~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 264 ALKTLNFY-AKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEEEC-CCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred hhcccccc-ccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 35777775 4477776 788999999999999999999998887 68999999755 77775 38899999999887
Q ss_pred CCCCcccCCCCCCC
Q 010557 458 YNRIFRIGHGNILS 471 (507)
Q Consensus 458 ~N~Is~IP~~~f~s 471 (507)
.+ ++.|+...|.+
T Consensus 342 ~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 342 KS-ITLIESGAFEG 354 (379)
T ss_dssp TT-CCEECTTTTTT
T ss_pred Cc-cCEEchhHhhC
Confidence 55 88888887764
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.53 E-value=0.0016 Score=61.02 Aligned_cols=80 Identities=11% Similarity=0.142 Sum_probs=59.2
Q ss_pred CCcEEEccCCCCCC--CCCCCCCCCCCEEEccCCC-CCC-----cCCCC-CCCCCcEEECCCCC-CCC--CcCCCCCCCc
Q 010557 384 SSAVAHIAGIGLKA--IPTISHFSSLRSVNLSNNF-IVH-----IPTGS-MPKGLHTLNLSRNK-INT--IEGLREMTRL 451 (507)
Q Consensus 384 sLt~L~LS~N~Lt~--LP~L~~L~sL~~LdLS~N~-Is~-----Ipp~s-f~~sL~~LdLS~Nk-Ls~--Lp~L~~L~sL 451 (507)
.|+.|+++++.|+. +..+..+++|+.|+|+++. |+. |.... +.++|+.|+|+++. |+. +..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 47899999999884 3478899999999999984 654 21110 11369999999974 775 5557788999
Q ss_pred cEEEccCCC-Ccc
Q 010557 452 RVLDLSYNR-IFR 463 (507)
Q Consensus 452 ~~LdLS~N~-Is~ 463 (507)
+.|+|++.. |+.
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 999998864 664
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.48 E-value=0.025 Score=57.12 Aligned_cols=96 Identities=13% Similarity=0.154 Sum_probs=67.4
Q ss_pred CCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEcc
Q 010557 384 SSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLS 457 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS 457 (507)
.|+.+.+. +.++.|+ .|..+.+|+.+.|..+ ++.|...+|. .+|+.+.|..+ ++.|.. |.+|.+|+.+.+.
T Consensus 289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEES
T ss_pred ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEEC
Confidence 46778885 6788887 8999999999999865 8899999887 68999999755 777753 9999999999999
Q ss_pred CCCCcccCCCCCCCCCEEEcCCCCC
Q 010557 458 YNRIFRIGHGNILSKPVFWLSFKLF 482 (507)
Q Consensus 458 ~N~Is~IP~~~f~sL~~L~LS~N~L 482 (507)
+|....-......+|+.+.+..|.+
T Consensus 366 ~~~~~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 366 GSRSQWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp SCHHHHHTCBCCCCC----------
T ss_pred CceeehhhhhccCCCCEEEeCCCCE
Confidence 8865422222334666666655543
No 160
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.33 E-value=0.0089 Score=61.15 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=81.9
Q ss_pred cCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCC-----CCCCCCCcEEECCC--CC------CCCCc-CC--C
Q 010557 383 SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPT-----GSMPKGLHTLNLSR--NK------INTIE-GL--R 446 (507)
Q Consensus 383 ~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp-----~sf~~sL~~LdLS~--Nk------Ls~Lp-~L--~ 446 (507)
+.|+.|.|++|.--.++.+. +++|+.|+|..+.|..-.- ..+ ++|+.|+|+. |. +..+. .+ .
T Consensus 172 P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~l-p~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~ 249 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDL-PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249 (362)
T ss_dssp TTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBC-TTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred CCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccC-CCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence 46899999998422455443 8999999999888754211 122 5899999863 22 11121 12 3
Q ss_pred CCCCccEEEccCCCCccc------CCCCCCCCCEEEcCCCCCCC------CCCCCCCCcCCeeeCCCccC
Q 010557 447 EMTRLRVLDLSYNRIFRI------GHGNILSKPVFWLSFKLFEF------LTIIPNCKRLSCNLYNSKSH 504 (507)
Q Consensus 447 ~L~sL~~LdLS~N~Is~I------P~~~f~sL~~L~LS~N~Ls~------L~~L~nL~~LscnlIs~n~~ 504 (507)
.+++|+.|+|.+|.|..- ....++.|+.|+|+.|.|.. +..+.++++|....++.|.+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 578999999999998731 12457799999999999843 34445677777777777654
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.91 E-value=0.03 Score=56.45 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=54.7
Q ss_pred CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCCcccCCCCCC---CC
Q 010557 400 TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIFRIGHGNIL---SK 472 (507)
Q Consensus 400 ~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~~~f~---sL 472 (507)
.|..+.+|+.+.+..+ ++.|...+|. .+|+.++|..+ ++.|.. |.+|.+|+.+.|..| ++.|+...|. +|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 5667777888777654 6777777776 57888888644 666642 777888888888766 7777776665 56
Q ss_pred CEEEcCCC
Q 010557 473 PVFWLSFK 480 (507)
Q Consensus 473 ~~L~LS~N 480 (507)
+.+.|..+
T Consensus 369 ~~i~lp~~ 376 (394)
T 4fs7_A 369 KKVELPKR 376 (394)
T ss_dssp CEEEEEGG
T ss_pred CEEEECCC
Confidence 77766544
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.19 E-value=0.12 Score=51.96 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=62.9
Q ss_pred CCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEcc
Q 010557 384 SSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLS 457 (507)
Q Consensus 384 sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS 457 (507)
.|+.+.+.. .++.|+ .|..+.+|+.++|..+ ++.|...+|. .+|+.+.|..| ++.|.. |..|.+|+.+.|.
T Consensus 298 ~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 298 SLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEEEECT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred ccccccccc-ccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 467788864 488886 7999999999999754 8999999987 78999999877 887753 9999999999997
Q ss_pred CCCCccc
Q 010557 458 YNRIFRI 464 (507)
Q Consensus 458 ~N~Is~I 464 (507)
.+ ++.+
T Consensus 375 ~~-~~~~ 380 (394)
T 4fs7_A 375 KR-LEQY 380 (394)
T ss_dssp GG-GGGG
T ss_pred CC-CEEh
Confidence 55 4444
No 163
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=91.41 E-value=0.036 Score=51.80 Aligned_cols=76 Identities=13% Similarity=0.212 Sum_probs=53.5
Q ss_pred CCCCEEEccCCCCCCcCCCCC--CCCCcEEECCCCC-CCC--CcCCCCC----CCccEEEccCC-CCcc--cCC-CCCCC
Q 010557 405 SSLRSVNLSNNFIVHIPTGSM--PKGLHTLNLSRNK-INT--IEGLREM----TRLRVLDLSYN-RIFR--IGH-GNILS 471 (507)
Q Consensus 405 ~sL~~LdLS~N~Is~Ipp~sf--~~sL~~LdLS~Nk-Ls~--Lp~L~~L----~sL~~LdLS~N-~Is~--IP~-~~f~s 471 (507)
..|+.|||+++.|+...-..+ .++|+.|+|+++. |+. +..+..+ ++|+.|+|+++ +|+. +.. ..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999998776322211 2789999999985 765 3445543 47999999987 4874 211 34678
Q ss_pred CCEEEcCCC
Q 010557 472 KPVFWLSFK 480 (507)
Q Consensus 472 L~~L~LS~N 480 (507)
|+.|+|++-
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 999988764
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.15 E-value=0.033 Score=52.94 Aligned_cols=79 Identities=18% Similarity=0.104 Sum_probs=56.3
Q ss_pred CCCCCCCEEEccCC-CCCCcCC----CCC-C-CCCcEEECCCCCCCCC--c----CCCCCCCccEEEccCCCCcccCC--
Q 010557 402 SHFSSLRSVNLSNN-FIVHIPT----GSM-P-KGLHTLNLSRNKINTI--E----GLREMTRLRVLDLSYNRIFRIGH-- 466 (507)
Q Consensus 402 ~~L~sL~~LdLS~N-~Is~Ipp----~sf-~-~sL~~LdLS~NkLs~L--p----~L~~L~sL~~LdLS~N~Is~IP~-- 466 (507)
..-+.|+.|+|++| .|..-.. ..+ . +.|+.|+|++|.|... . .+..-+.|+.|+|+.|.|..-..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34578999999985 7764211 111 1 6899999999999862 1 25566889999999999985332
Q ss_pred -----CCCCCCCEEEcCCC
Q 010557 467 -----GNILSKPVFWLSFK 480 (507)
Q Consensus 467 -----~~f~sL~~L~LS~N 480 (507)
..-..|+.|+|++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 22337899999865
Done!