Query 010559
Match_columns 507
No_of_seqs 338 out of 1757
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 09:25:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jtn_A LIM domain-binding prot 99.9 6.6E-24 2.3E-28 200.1 10.9 124 150-285 57-180 (182)
2 2xqn_T Testin, TESS; metal-bin 99.9 4.9E-24 1.7E-28 188.9 8.2 120 152-284 2-123 (126)
3 2rgt_A Fusion of LIM/homeobox 99.9 4.7E-24 1.6E-28 198.8 6.8 124 152-287 5-128 (169)
4 2xjy_A Rhombotin-2; oncoprotei 99.9 6E-24 2.1E-28 189.4 6.9 121 153-285 2-126 (131)
5 1rut_X Flinc4, fusion protein 99.9 3.3E-23 1.1E-27 196.4 6.0 124 152-287 4-131 (188)
6 1b8t_A Protein (CRP1); LIM dom 99.9 9.8E-23 3.4E-27 193.6 7.0 133 151-299 5-185 (192)
7 2cup_A Skeletal muscle LIM-pro 99.8 1.1E-20 3.8E-25 160.8 8.0 98 151-259 3-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.7 1.1E-18 3.7E-23 154.3 3.8 107 152-286 4-114 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.7 5.5E-17 1.9E-21 141.7 6.6 102 152-285 2-105 (114)
10 1iml_A CRIP, cysteine rich int 99.6 8.5E-16 2.9E-20 124.3 5.1 71 154-224 1-72 (76)
11 2ehe_A Four and A half LIM dom 99.6 1.6E-15 5.5E-20 124.3 6.6 78 141-218 2-81 (82)
12 2dlo_A Thyroid receptor-intera 99.6 1.5E-15 5.1E-20 124.3 6.1 78 140-218 2-80 (81)
13 1a7i_A QCRP2 (LIM1); LIM domai 99.6 5.3E-16 1.8E-20 127.0 3.2 74 150-223 4-77 (81)
14 1x3h_A Leupaxin; paxillin fami 99.5 3.2E-15 1.1E-19 121.8 5.7 77 141-218 2-79 (80)
15 2cuq_A Four and A half LIM dom 99.5 4.3E-15 1.5E-19 121.0 6.0 77 141-218 2-79 (80)
16 1x68_A FHL5 protein; four-and- 99.5 5.3E-15 1.8E-19 119.7 5.9 69 152-220 4-75 (76)
17 2dj7_A Actin-binding LIM prote 99.5 5.5E-15 1.9E-19 121.3 5.6 68 150-218 12-79 (80)
18 2dar_A PDZ and LIM domain prot 99.5 7.2E-15 2.5E-19 122.8 6.4 68 150-218 22-89 (90)
19 2cu8_A Cysteine-rich protein 2 99.5 8.7E-15 3E-19 118.3 5.1 68 151-218 7-75 (76)
20 2cur_A Skeletal muscle LIM-pro 99.5 8.4E-15 2.9E-19 116.1 4.6 67 151-218 3-69 (69)
21 1x63_A Skeletal muscle LIM-pro 99.5 1.7E-14 5.8E-19 118.0 6.2 77 141-217 2-80 (82)
22 2d8z_A Four and A half LIM dom 99.5 1.2E-14 4.2E-19 115.3 4.7 66 152-218 4-69 (70)
23 1x4k_A Skeletal muscle LIM-pro 99.5 1.9E-14 6.3E-19 114.8 5.1 67 152-218 4-71 (72)
24 1wyh_A SLIM 2, skeletal muscle 99.5 1.5E-14 5.1E-19 115.4 4.5 67 152-218 4-71 (72)
25 2d8y_A Eplin protein; LIM doma 99.5 3.2E-14 1.1E-18 119.1 6.7 73 151-223 13-85 (91)
26 1g47_A Pinch protein; LIM doma 99.5 2E-14 6.9E-19 116.1 4.7 67 151-217 9-76 (77)
27 1x4l_A Skeletal muscle LIM-pro 99.5 2.5E-14 8.6E-19 114.3 5.1 66 151-216 3-71 (72)
28 1nyp_A Pinch protein; LIM doma 99.5 1.8E-14 6.3E-19 113.2 3.3 63 152-215 4-66 (66)
29 1x62_A C-terminal LIM domain p 99.5 2.1E-14 7.2E-19 117.1 3.7 67 150-217 12-78 (79)
30 1x64_A Alpha-actinin-2 associa 99.5 8.1E-14 2.8E-18 116.1 6.9 67 150-217 22-88 (89)
31 1x6a_A LIMK-2, LIM domain kina 99.4 7E-14 2.4E-18 114.2 4.9 77 141-218 2-81 (81)
32 2d8x_A Protein pinch; LIM doma 99.4 7E-14 2.4E-18 111.1 4.6 66 151-217 3-68 (70)
33 2co8_A NEDD9 interacting prote 99.4 2.1E-13 7.2E-18 112.1 6.9 68 150-217 12-81 (82)
34 2cor_A Pinch protein; LIM doma 99.4 9.6E-14 3.3E-18 113.4 4.3 66 150-217 12-77 (79)
35 2ehe_A Four and A half LIM dom 99.4 3E-13 1E-17 110.7 6.0 80 199-293 1-80 (82)
36 2egq_A FHL1 protein; LIM domai 99.4 2.6E-13 8.9E-18 109.6 5.4 70 141-210 2-76 (77)
37 1x61_A Thyroid receptor intera 99.4 2E-13 6.8E-18 108.9 4.5 67 152-219 4-71 (72)
38 1x6a_A LIMK-2, LIM domain kina 99.4 2.8E-13 9.7E-18 110.6 5.3 75 199-286 1-75 (81)
39 2cuq_A Four and A half LIM dom 99.4 3.7E-13 1.3E-17 109.5 5.7 78 199-293 1-78 (80)
40 1b8t_A Protein (CRP1); LIM dom 99.4 1.9E-13 6.7E-18 129.4 4.5 74 151-224 113-186 (192)
41 1wig_A KIAA1808 protein; LIM d 99.4 4.4E-13 1.5E-17 107.9 4.9 63 152-215 4-67 (73)
42 1x3h_A Leupaxin; paxillin fami 99.3 6.2E-13 2.1E-17 108.2 5.1 79 199-294 1-79 (80)
43 2dlo_A Thyroid receptor-intera 99.3 7.6E-13 2.6E-17 108.1 5.5 79 199-294 2-80 (81)
44 2l4z_A DNA endonuclease RBBP8, 99.3 1.1E-12 3.8E-17 116.3 6.1 64 150-213 58-123 (123)
45 3f6q_B LIM and senescent cell 99.3 8.2E-13 2.8E-17 104.7 4.1 63 151-213 9-72 (72)
46 2egq_A FHL1 protein; LIM domai 99.3 1.3E-12 4.6E-17 105.4 4.8 74 199-284 1-76 (77)
47 1x63_A Skeletal muscle LIM-pro 99.3 2.5E-12 8.5E-17 105.1 5.4 79 199-292 1-79 (82)
48 2l3k_A Rhombotin-2, linker, LI 99.3 1.4E-12 4.9E-17 115.1 4.2 73 154-226 9-83 (123)
49 2iyb_E Testin, TESS, TES; LIM 99.3 2.3E-12 7.9E-17 101.1 3.5 59 153-211 2-64 (65)
50 1v6g_A Actin binding LIM prote 99.2 6.2E-12 2.1E-16 102.6 5.7 72 141-213 2-75 (81)
51 1v6g_A Actin binding LIM prote 99.2 1.9E-11 6.5E-16 99.7 5.4 74 199-286 1-74 (81)
52 1rut_X Flinc4, fusion protein 99.0 3.6E-11 1.2E-15 113.5 1.3 82 140-221 53-139 (188)
53 2xjy_A Rhombotin-2; oncoprotei 99.0 3.3E-11 1.1E-15 106.8 -0.9 75 140-214 50-129 (131)
54 2xqn_T Testin, TESS; metal-bin 98.9 1.4E-10 4.9E-15 102.1 1.4 73 140-212 49-125 (126)
55 1x68_A FHL5 protein; four-and- 98.9 8.5E-10 2.9E-14 88.9 5.1 71 210-295 2-74 (76)
56 1wig_A KIAA1808 protein; LIM d 98.8 2.6E-09 8.9E-14 85.7 5.1 63 210-286 2-64 (73)
57 2dar_A PDZ and LIM domain prot 98.8 3.2E-09 1.1E-13 88.3 5.8 76 201-293 13-88 (90)
58 1x4k_A Skeletal muscle LIM-pro 98.8 3.6E-09 1.2E-13 83.9 4.8 69 210-293 2-70 (72)
59 2d8z_A Four and A half LIM dom 98.8 3.7E-09 1.3E-13 83.5 4.7 67 210-293 2-68 (70)
60 2cup_A Skeletal muscle LIM-pro 98.8 3.4E-09 1.1E-13 89.6 4.3 74 211-299 3-76 (101)
61 1wyh_A SLIM 2, skeletal muscle 98.8 4.3E-09 1.5E-13 83.5 4.7 69 210-293 2-70 (72)
62 2jtn_A LIM domain-binding prot 98.8 4.9E-09 1.7E-13 98.2 5.9 84 199-299 43-129 (182)
63 2cur_A Skeletal muscle LIM-pro 98.8 4.1E-09 1.4E-13 83.0 4.4 66 211-293 3-68 (69)
64 2l3k_A Rhombotin-2, linker, LI 98.8 2.8E-09 9.4E-14 93.9 3.1 74 208-295 1-76 (123)
65 1m3v_A FLIN4, fusion of the LI 98.7 1.2E-09 4.3E-14 96.0 0.1 74 211-299 3-79 (122)
66 1x4l_A Skeletal muscle LIM-pro 98.7 1.2E-08 4.1E-13 81.0 5.7 68 211-292 3-71 (72)
67 2rgt_A Fusion of LIM/homeobox 98.7 1.2E-09 3.9E-14 101.4 -0.4 77 140-216 51-131 (169)
68 3f6q_B LIM and senescent cell 98.7 1E-08 3.5E-13 80.8 3.7 65 208-285 6-70 (72)
69 2cu8_A Cysteine-rich protein 2 98.7 2E-08 6.7E-13 80.7 5.3 68 210-293 6-74 (76)
70 1iml_A CRIP, cysteine rich int 98.7 1.5E-08 5.2E-13 81.4 4.5 68 214-297 1-69 (76)
71 1g47_A Pinch protein; LIM doma 98.7 1.5E-08 5E-13 81.4 4.2 68 211-293 9-76 (77)
72 1x61_A Thyroid receptor intera 98.6 2E-08 6.9E-13 79.6 4.8 63 211-286 3-65 (72)
73 1nyp_A Pinch protein; LIM doma 98.6 1.3E-08 4.4E-13 79.5 3.4 61 210-285 2-62 (66)
74 1a7i_A QCRP2 (LIM1); LIM domai 98.6 1.3E-08 4.3E-13 82.8 3.2 70 212-297 6-75 (81)
75 2iyb_E Testin, TESS, TES; LIM 98.6 1.8E-08 6.2E-13 78.7 3.9 60 212-284 1-63 (65)
76 2cor_A Pinch protein; LIM doma 98.6 3.5E-08 1.2E-12 80.2 5.0 64 211-292 13-76 (79)
77 2dj7_A Actin-binding LIM prote 98.6 4.6E-08 1.6E-12 79.8 5.1 65 212-293 14-78 (80)
78 2d8x_A Protein pinch; LIM doma 98.6 4.4E-08 1.5E-12 77.3 4.4 61 211-286 3-63 (70)
79 1j2o_A FLIN2, fusion of rhombo 98.5 2.9E-08 9.9E-13 86.2 3.3 69 213-296 3-72 (114)
80 2l4z_A DNA endonuclease RBBP8, 98.5 3.7E-08 1.3E-12 87.0 3.7 63 210-285 58-121 (123)
81 2d8y_A Eplin protein; LIM doma 98.5 5.9E-08 2E-12 80.7 4.0 68 211-294 13-80 (91)
82 1x64_A Alpha-actinin-2 associa 98.5 7.6E-08 2.6E-12 79.7 4.5 64 212-292 24-87 (89)
83 1x62_A C-terminal LIM domain p 98.4 4.9E-08 1.7E-12 79.1 1.7 60 212-286 14-73 (79)
84 2co8_A NEDD9 interacting prote 98.4 2.5E-07 8.6E-12 75.6 5.5 62 212-286 14-76 (82)
85 1zfo_A LAsp-1; LIM domain, zin 97.3 7.1E-05 2.4E-09 50.3 1.5 29 153-181 3-31 (31)
86 2d3g_P Ubiquitin interacting m 92.6 0.057 2E-06 34.2 1.9 23 40-62 2-24 (26)
87 1q0v_A Hydrophilic protein; ha 83.8 2.8 9.6E-05 34.0 6.6 18 39-56 9-26 (81)
88 3gge_A PDZ domain-containing p 81.3 0.23 7.8E-06 41.7 -0.7 33 357-389 43-75 (95)
89 4ap4_A E3 ubiquitin ligase RNF 79.3 0.31 1E-05 41.6 -0.6 104 181-299 8-123 (133)
90 1ujd_A KIAA0559 protein; PDZ d 78.6 0.2 6.7E-06 42.7 -2.1 37 360-396 67-103 (117)
91 2db5_A INAD-like protein; PDZ 77.8 0.17 5.9E-06 43.6 -2.7 43 360-405 72-115 (128)
92 2awx_A Synapse associated prot 73.8 0.28 9.5E-06 40.7 -2.4 37 360-396 51-87 (105)
93 1v6b_A Harmonin isoform A1; st 73.0 0.29 1E-05 41.8 -2.5 37 360-396 61-101 (118)
94 3e17_A Tight junction protein 71.3 0.32 1.1E-05 39.2 -2.5 37 360-396 39-75 (88)
95 1r6j_A Syntenin 1; PDZ, membra 71.0 0.3 1E-05 39.6 -2.7 35 360-394 40-74 (82)
96 2ejy_A 55 kDa erythrocyte memb 70.2 0.44 1.5E-05 39.6 -2.0 32 360-391 54-85 (97)
97 3soe_A Membrane-associated gua 69.9 0.77 2.6E-05 39.5 -0.5 32 357-388 46-77 (113)
98 4e34_A Golgi-associated PDZ an 68.9 0.31 1.1E-05 38.8 -3.1 30 359-388 45-74 (87)
99 2ehr_A INAD-like protein; PDZ 68.5 0.48 1.7E-05 40.0 -2.1 37 360-396 68-104 (117)
100 1uju_A Scribble; PDZ domain, c 68.3 0.43 1.5E-05 39.9 -2.4 36 361-396 63-98 (111)
101 1zfo_A LAsp-1; LIM domain, zin 68.3 2.4 8.3E-05 27.8 1.8 27 182-208 5-31 (31)
102 1v62_A KIAA1719 protein; struc 67.7 0.47 1.6E-05 40.3 -2.3 37 360-396 60-96 (117)
103 2lob_A Golgi-associated PDZ an 70.4 1.1 3.9E-05 37.8 0.0 36 359-394 70-105 (112)
104 1m5z_A GRIP, AMPA receptor int 66.7 0.44 1.5E-05 38.2 -2.6 21 360-380 49-69 (91)
105 1y7n_A Amyloid beta A4 precurs 66.7 0.47 1.6E-05 38.7 -2.5 34 360-393 48-81 (90)
106 3b76_A E3 ubiquitin-protein li 66.5 0.63 2.2E-05 39.9 -1.8 34 360-393 71-104 (118)
107 2vwr_A Ligand of NUMB protein 66.3 0.46 1.6E-05 38.5 -2.6 25 360-384 47-71 (95)
108 1wha_A KIAA0147 protein, scrib 66.1 0.6 2.1E-05 38.6 -1.9 36 361-396 57-92 (105)
109 2kv8_A RGS12, regulator of G-p 66.0 0.47 1.6E-05 37.4 -2.5 28 360-387 40-67 (83)
110 1d5g_A Human phosphatase HPTP1 65.7 0.52 1.8E-05 38.1 -2.4 34 361-394 52-85 (96)
111 2jil_A GRIP1 protein, glutamat 65.7 0.48 1.6E-05 38.5 -2.6 36 361-396 51-86 (97)
112 2dkr_A LIN-7 homolog B; LIN-7B 65.6 0.47 1.6E-05 38.1 -2.7 27 360-386 48-74 (93)
113 2byg_A Channel associated prot 65.5 0.52 1.8E-05 40.2 -2.5 35 360-394 72-106 (117)
114 2vsp_A PDZ domain-containing p 65.3 0.59 2E-05 37.5 -2.1 37 360-396 44-80 (91)
115 2q3g_A PDZ and LIM domain prot 65.2 0.52 1.8E-05 37.7 -2.4 27 360-386 44-70 (89)
116 2yt7_A Amyloid beta A4 precurs 65.0 0.55 1.9E-05 38.7 -2.4 31 359-389 54-84 (101)
117 3nfk_A Tyrosine-protein phosph 64.9 0.6 2E-05 38.6 -2.2 26 361-386 63-88 (107)
118 2i1n_A Discs, large homolog 3; 64.6 0.52 1.8E-05 38.7 -2.6 27 360-386 52-78 (102)
119 2jik_A Synaptojanin-2 binding 64.5 0.53 1.8E-05 38.5 -2.6 27 361-387 56-82 (101)
120 3egg_C Spinophilin; PP1, serin 64.5 0.6 2E-05 42.8 -2.5 36 359-394 128-163 (170)
121 2lva_A Ubiquitin carboxyl-term 68.1 1.4 4.8E-05 38.5 0.0 23 36-58 90-112 (129)
122 3qik_A Phosphatidylinositol 3, 64.2 0.45 1.5E-05 40.3 -3.1 37 360-396 56-95 (101)
123 1wf8_A Neurabin-I; PDZ domain, 64.1 0.55 1.9E-05 39.0 -2.6 37 360-396 58-94 (107)
124 2csj_A TJP2 protein; PDZ domai 64.1 0.61 2.1E-05 39.4 -2.4 37 360-396 62-98 (117)
125 2he4_A Na(+)/H(+) exchange reg 64.1 0.63 2.2E-05 37.2 -2.1 32 360-391 45-76 (90)
126 3axa_A Afadin, nectin-3, prote 63.9 0.58 2E-05 38.7 -2.5 37 360-396 56-92 (106)
127 2eno_A Synaptojanin-2-binding 63.8 0.49 1.7E-05 40.2 -3.0 37 360-396 65-101 (120)
128 1um7_A Synapse-associated prot 63.7 0.69 2.3E-05 38.5 -2.1 36 361-396 58-93 (113)
129 1ujv_A Membrane associated gua 63.6 0.53 1.8E-05 38.6 -2.7 31 358-388 45-75 (96)
130 1uep_A Membrane associated gua 62.8 0.39 1.3E-05 39.7 -3.7 27 360-386 52-78 (103)
131 2i04_A Membrane-associated gua 62.6 0.7 2.4E-05 36.5 -2.1 26 361-386 44-69 (85)
132 2g5m_B Neurabin-2; spinophilin 62.6 0.64 2.2E-05 38.9 -2.5 37 360-396 53-89 (113)
133 1v5l_A PDZ and LIM domain 3; a 62.5 0.65 2.2E-05 38.3 -2.4 38 359-396 45-82 (103)
134 3o46_A Maguk P55 subfamily mem 62.4 0.67 2.3E-05 37.4 -2.3 28 360-387 46-73 (93)
135 1n7t_A 99-MER peptide of densi 61.7 0.62 2.1E-05 38.3 -2.7 37 360-396 59-95 (103)
136 2daz_A INAD-like protein; PDZ 61.5 0.68 2.3E-05 39.6 -2.6 27 360-386 69-95 (124)
137 1kwa_A Hcask/LIN-2 protein; PD 61.3 1.3 4.6E-05 35.4 -0.6 29 359-387 42-70 (88)
138 2djt_A Unnamed protein product 61.1 0.68 2.3E-05 38.1 -2.5 24 361-384 57-80 (104)
139 1ufx_A KIAA1526 protein; PDZ d 61.1 1.1 3.8E-05 37.2 -1.2 30 360-389 50-79 (103)
140 2krg_A Na(+)/H(+) exchange reg 61.0 0.66 2.3E-05 44.2 -3.0 24 360-383 50-73 (216)
141 3gsl_A Disks large homolog 4; 60.9 0.76 2.6E-05 41.6 -2.5 37 360-396 148-184 (196)
142 1n7e_A AMPA receptor interacti 60.9 0.7 2.4E-05 37.6 -2.5 26 361-386 49-74 (97)
143 1mfg_A ERB-B2 interacting prot 60.9 0.65 2.2E-05 37.5 -2.6 24 360-383 51-74 (95)
144 1wi4_A Synip, syntaxin binding 60.8 1.4 4.8E-05 36.9 -0.6 30 359-388 58-87 (109)
145 2edz_A PDZ domain-containing p 60.8 1.2 4.1E-05 37.4 -1.1 37 360-396 55-91 (114)
146 2o2t_A Multiple PDZ domain pro 60.8 0.7 2.4E-05 38.9 -2.6 24 360-383 67-91 (117)
147 1wfv_A Membrane associated gua 60.6 0.62 2.1E-05 38.1 -2.9 23 361-383 55-77 (103)
148 2d92_A INAD-like protein; PDZ 60.4 0.73 2.5E-05 38.4 -2.5 30 360-389 62-91 (108)
149 1q7x_A PDZ2B domain of PTP-BAS 60.2 0.82 2.8E-05 37.9 -2.2 27 361-387 61-87 (108)
150 1jm7_B BARD1, BRCA1-associated 60.2 7.4 0.00025 32.7 3.9 45 181-225 23-67 (117)
151 4amh_A Disks large homolog 1; 60.0 0.78 2.7E-05 38.2 -2.4 23 360-382 50-72 (106)
152 2dc2_A GOPC, golgi associated 59.9 0.59 2E-05 38.7 -3.1 37 360-396 53-89 (103)
153 2qg1_A Multiple PDZ domain pro 59.9 0.83 2.8E-05 36.6 -2.2 26 361-386 48-73 (92)
154 2koj_A Partitioning defective 59.7 0.73 2.5E-05 38.4 -2.6 28 361-388 58-85 (111)
155 1ihj_A INAD; intermolecular di 59.3 0.75 2.6E-05 37.3 -2.5 24 361-384 56-79 (98)
156 1um1_A KIAA1849 protein, RSGI 59.2 1.2 4.1E-05 37.0 -1.4 20 361-380 55-74 (110)
157 1uew_A Membrane associated gua 59.1 0.8 2.7E-05 38.5 -2.5 35 359-393 60-94 (114)
158 1qav_A Alpha-1 syntrophin (res 59.0 0.64 2.2E-05 37.2 -3.0 27 360-386 48-74 (90)
159 2uzc_A Human pdlim5, PDZ and L 59.0 0.75 2.6E-05 36.5 -2.6 26 360-385 44-69 (88)
160 3cia_A Cold-active aminopeptid 58.9 2.8 9.7E-05 45.7 1.2 39 399-437 296-336 (605)
161 3l4f_D SH3 and multiple ankyri 58.9 0.96 3.3E-05 39.4 -2.1 35 360-394 82-116 (132)
162 1rgw_A ZAsp protein; PDZ, cyph 58.9 0.78 2.7E-05 36.1 -2.4 26 359-384 41-66 (85)
163 2dlu_A INAD-like protein; PDZ 58.7 0.73 2.5E-05 38.4 -2.8 27 361-387 57-83 (111)
164 4fgm_A Aminopeptidase N family 58.6 2.5 8.7E-05 46.2 0.8 41 397-437 267-320 (597)
165 2q9v_A Membrane-associated gua 58.5 1.5 5.2E-05 34.8 -0.8 23 361-383 46-68 (90)
166 3i4w_A Disks large homolog 4; 58.4 0.72 2.5E-05 37.8 -2.8 36 361-396 54-89 (104)
167 2v90_A PDZ domain-containing p 58.2 0.68 2.3E-05 37.5 -3.0 28 360-387 47-74 (96)
168 2ego_A General receptor for ph 58.0 0.89 3.1E-05 36.9 -2.3 30 360-389 54-83 (96)
169 3cbz_A Dishevelled-2; PDZ doma 57.9 1.6 5.5E-05 36.4 -0.8 29 360-388 51-79 (108)
170 2dm8_A INAD-like protein; PDZ 57.8 0.86 3E-05 38.2 -2.5 26 361-386 62-87 (116)
171 1vb7_A PDZ and LIM domain 2; P 57.8 0.85 2.9E-05 36.9 -2.5 27 360-386 47-73 (94)
172 1i16_A Interleukin 16, LCF; cy 57.7 1.7 5.9E-05 37.5 -0.6 31 360-390 75-105 (130)
173 2edv_A FERM and PDZ domain-con 57.7 0.86 3E-05 37.2 -2.4 24 359-382 46-69 (96)
174 2jny_A Uncharacterized BCR; st 57.4 2.4 8E-05 33.2 0.2 53 252-332 10-62 (67)
175 1wi2_A Riken cDNA 2700099C19; 57.3 0.8 2.7E-05 37.8 -2.7 28 360-387 58-85 (104)
176 1wfg_A Regulating synaptic mem 56.8 1.7 6E-05 37.6 -0.8 28 360-387 83-110 (131)
177 2opg_A Multiple PDZ domain pro 56.3 0.93 3.2E-05 36.7 -2.5 22 361-382 49-70 (98)
178 3kzd_A TIAM-1, T-lymphoma inva 56.2 1.9 6.4E-05 35.8 -0.6 29 359-387 51-79 (94)
179 2qkv_A Inactivation-NO-after-p 56.1 0.94 3.2E-05 36.9 -2.5 23 361-383 50-72 (96)
180 2kpk_A Membrane-associated gua 56.1 0.91 3.1E-05 39.2 -2.7 30 360-389 61-90 (129)
181 3qe1_A Sorting nexin-27, G pro 56.0 1 3.5E-05 37.2 -2.3 35 360-394 60-94 (107)
182 2r4h_A Membrane-associated gua 55.8 0.97 3.3E-05 38.0 -2.5 24 361-384 68-91 (112)
183 2pa1_A PDZ and LIM domain prot 55.8 0.94 3.2E-05 35.9 -2.5 27 360-386 43-69 (87)
184 2yuy_A RHO GTPase activating p 55.3 0.81 2.8E-05 39.3 -3.1 36 360-395 78-113 (126)
185 1q3o_A Shank1; PDZ, GKAP, pept 54.9 1.1 3.7E-05 37.3 -2.3 29 360-388 62-90 (109)
186 1uhp_A Hypothetical protein KI 54.8 1.1 3.9E-05 37.0 -2.2 27 360-386 59-85 (107)
187 1ueq_A Membrane associated gua 54.8 1 3.6E-05 38.4 -2.5 29 360-388 62-90 (123)
188 2eeg_A PDZ and LIM domain prot 54.7 1 3.5E-05 36.4 -2.5 20 360-379 49-68 (94)
189 2iwq_A Multiple PDZ domain pro 54.7 1.2 4.2E-05 38.2 -2.1 28 361-388 78-105 (123)
190 1q0v_A Hydrophilic protein; ha 54.6 5.1 0.00017 32.5 1.7 21 38-58 51-71 (81)
191 2fe5_A Presynaptic protein SAP 54.2 1.1 3.7E-05 36.0 -2.4 23 361-383 52-74 (94)
192 1wg6_A Hypothetical protein (r 54.0 0.91 3.1E-05 39.2 -3.0 29 360-388 73-101 (127)
193 1nf3_C PAR-6B; semi-CRIB motif 53.8 1.1 3.8E-05 38.5 -2.5 31 361-391 84-114 (128)
194 2la8_A Inactivation-NO-after-p 53.7 0.89 3E-05 38.1 -3.1 27 360-386 43-69 (106)
195 2jre_A C60-1 PDZ domain peptid 53.5 0.81 2.8E-05 37.9 -3.4 23 361-383 63-85 (108)
196 2iwo_A Multiple PDZ domain pro 53.4 1.3 4.4E-05 37.9 -2.2 26 360-385 71-96 (120)
197 2ysl_A Tripartite motif-contai 53.2 6.6 0.00023 29.7 2.2 45 181-226 21-70 (73)
198 3r0h_A INAD, inactivation-NO-a 53.0 1.1 3.8E-05 41.2 -2.9 37 360-396 154-190 (206)
199 2iwn_A Multiple PDZ domain pro 52.9 1.1 3.8E-05 35.9 -2.5 20 361-380 52-71 (97)
200 3r68_A Na(+)/H(+) exchange reg 52.9 1.6 5.5E-05 35.0 -1.5 29 360-388 46-74 (95)
201 2e7k_A Maguk P55 subfamily mem 52.9 1.4 4.7E-05 35.6 -2.0 33 360-393 47-79 (91)
202 3ngh_A PDZ domain-containing p 52.8 1.2 4.2E-05 36.6 -2.3 37 360-396 43-79 (106)
203 2eei_A PDZ domain-containing p 52.0 0.97 3.3E-05 37.2 -3.1 26 360-385 49-74 (106)
204 2edp_A Fragment, shroom family 51.9 1.3 4.5E-05 36.3 -2.3 19 360-378 53-71 (100)
205 2f5y_A Regulator of G-protein 51.7 1.3 4.5E-05 35.5 -2.2 24 360-383 41-64 (91)
206 1wif_A RSGI RUH-020, riken cDN 51.6 1.8 6.3E-05 37.7 -1.5 37 360-396 67-105 (126)
207 2djb_A Polycomb group ring fin 51.4 6.9 0.00024 29.8 2.0 46 181-226 16-63 (72)
208 2fcf_A Multiple PDZ domain pro 51.4 1.5 5.1E-05 35.8 -2.0 27 361-387 58-84 (103)
209 2xq0_A LTA-4 hydrolase, leukot 51.1 3.6 0.00012 45.1 0.5 39 399-437 297-337 (632)
210 3khf_A Microtubule-associated 51.1 1.4 4.7E-05 35.8 -2.3 34 360-393 51-84 (99)
211 2pkt_A PDZ and LIM domain prot 50.9 1.2 4E-05 35.7 -2.7 20 360-379 44-63 (91)
212 2yub_A LIMK-2, LIM domain kina 50.9 1.4 4.9E-05 37.6 -2.3 29 360-388 63-91 (118)
213 1g9o_A NHE-RF; PDZ domain, com 50.7 2.4 8.1E-05 33.7 -0.8 24 360-383 44-67 (91)
214 2kom_A Partitioning defective 50.6 1.3 4.4E-05 37.9 -2.6 27 361-387 77-103 (121)
215 2fne_A Multiple PDZ domain pro 50.0 1.6 5.5E-05 37.1 -2.1 27 360-386 71-97 (117)
216 3tsv_A Tight junction protein 50.0 1.3 4.3E-05 38.2 -2.8 37 360-396 68-106 (124)
217 2dmz_A INAD-like protein; PDZ 49.4 1.5 5.1E-05 37.6 -2.4 27 361-387 65-91 (129)
218 1bor_A Transcription factor PM 49.3 17 0.00057 26.4 3.8 44 181-226 7-50 (56)
219 2d8i_A T-cell lymphoma invasio 49.0 3 0.0001 35.5 -0.5 26 360-385 61-86 (114)
220 1wf7_A Enigma homologue protei 48.9 1.3 4.6E-05 36.3 -2.7 20 360-379 46-65 (103)
221 2d90_A PDZ domain containing p 48.6 1.7 5.9E-05 35.5 -2.0 25 360-384 47-71 (102)
222 2cs5_A Tyrosine-protein phosph 48.6 2.9 0.0001 35.2 -0.7 28 360-387 60-87 (119)
223 1v5q_A GRIP1 homolog, glutamat 48.4 1.2 4.2E-05 37.9 -3.1 26 361-386 64-89 (122)
224 3vk6_A E3 ubiquitin-protein li 48.2 13 0.00044 31.4 3.2 44 182-225 3-49 (101)
225 2jxo_A Ezrin-radixin-moesin-bi 48.0 2.8 9.5E-05 33.9 -0.8 27 360-386 50-76 (98)
226 3suz_A Amyloid beta A4 precurs 47.3 4 0.00014 42.0 0.0 37 360-396 332-368 (388)
227 1va8_A Maguk P55 subfamily mem 47.2 1.7 5.7E-05 36.5 -2.4 25 362-386 68-92 (113)
228 1z87_A Alpha-1-syntrophin; pro 46.7 2 6.9E-05 42.2 -2.3 38 359-396 120-157 (263)
229 1x6d_A Interleukin-16; PDZ dom 46.3 2.6 9.1E-05 35.4 -1.3 23 360-382 60-82 (119)
230 3cyy_A Tight junction protein 45.9 1.6 5.6E-05 34.7 -2.6 19 361-379 42-60 (92)
231 2ect_A Ring finger protein 126 45.9 10 0.00034 29.2 2.2 48 252-299 15-62 (78)
232 3k1r_A Harmonin; protein-prote 45.8 1.6 5.6E-05 40.1 -2.9 35 361-396 128-162 (192)
233 1t1h_A Gspef-atpub14, armadill 45.1 11 0.00039 28.9 2.4 47 178-225 6-55 (78)
234 1uit_A Human discs large 5 pro 45.0 1.9 6.4E-05 36.3 -2.5 20 360-379 59-78 (117)
235 3bpu_A Membrane-associated gua 44.8 3.3 0.00011 32.7 -0.9 27 360-386 42-68 (88)
236 1x5q_A LAP4 protein; PDZ domai 44.8 1.9 6.4E-05 35.8 -2.5 20 360-379 63-82 (110)
237 2ecy_A TNF receptor-associated 44.5 7.5 0.00026 29.0 1.2 45 181-226 16-63 (66)
238 3u9w_A Leukotriene A-4 hydrola 44.3 5.4 0.00018 43.5 0.5 39 399-437 289-329 (608)
239 2rcz_A Tight junction protein 43.9 3.6 0.00012 31.5 -0.7 23 361-383 40-62 (81)
240 2eeh_A PDZ domain-containing p 43.5 1.9 6.6E-05 35.1 -2.5 21 360-380 53-73 (100)
241 2z17_A Pleckstrin homology SEC 43.4 1.7 6E-05 35.7 -2.8 29 360-388 65-93 (104)
242 1whd_A RGS3, regulator of G-pr 43.1 3.6 0.00012 33.5 -0.9 23 360-382 53-75 (100)
243 2dls_A PDZ-rhogef, RHO guanine 42.4 2.1 7.3E-05 34.4 -2.4 20 360-379 46-65 (93)
244 3hpk_A Protein interacting wit 42.3 3.6 0.00012 35.0 -1.1 20 360-379 63-82 (125)
245 2ecv_A Tripartite motif-contai 41.9 14 0.00046 28.5 2.4 45 181-226 20-72 (85)
246 2qt5_A Glutamate receptor-inte 40.9 2.4 8.4E-05 38.8 -2.5 36 361-396 154-189 (200)
247 1iym_A EL5; ring-H2 finger, ub 40.6 20 0.00068 25.3 3.0 45 253-297 6-51 (55)
248 1vae_A Rhophilin 2, rhophilin, 40.3 4.3 0.00015 34.1 -0.9 25 360-384 53-77 (111)
249 1p1d_A PDZ45, glutamate recept 40.2 2.8 9.5E-05 38.4 -2.3 33 361-393 154-186 (196)
250 2y43_A E3 ubiquitin-protein li 39.7 9.3 0.00032 30.9 1.1 45 181-225 23-69 (99)
251 2w4f_A Protein LAP4; structura 39.7 2.4 8.1E-05 34.1 -2.5 20 360-379 51-70 (97)
252 3nw0_A Non-structural maintena 39.6 10 0.00035 36.5 1.6 48 152-226 179-230 (238)
253 1z5h_A Tricorn protease intera 39.4 8.3 0.00029 43.3 1.0 41 397-437 259-301 (780)
254 2xdt_A Endoplasmic reticulum a 39.1 8.5 0.00029 44.0 1.0 43 396-438 301-345 (897)
255 2vsv_A Rhophilin-2; scaffold p 38.3 4.4 0.00015 34.2 -1.2 27 360-386 61-87 (109)
256 3sfj_A TAX1-binding protein 3; 38.2 4.9 0.00017 32.7 -0.8 27 360-386 62-88 (104)
257 3l11_A E3 ubiquitin-protein li 38.0 15 0.0005 30.6 2.1 29 181-210 16-44 (115)
258 4fke_A Aminopeptidase N; zinc 37.7 9.2 0.00031 43.8 1.0 41 397-437 316-358 (909)
259 3cqb_A Probable protease HTPX 37.3 7.7 0.00026 32.5 0.3 13 397-409 83-95 (107)
260 2yur_A Retinoblastoma-binding 37.1 17 0.00058 27.8 2.2 44 181-225 16-64 (74)
261 2gzv_A PRKCA-binding protein; 36.6 5.6 0.00019 33.5 -0.8 26 361-386 69-94 (114)
262 3se6_A Endoplasmic reticulum a 36.3 11 0.00037 43.6 1.4 42 396-437 363-406 (967)
263 2eaq_A LIM domain only protein 36.2 5.4 0.00019 31.5 -0.9 17 360-376 45-61 (90)
264 2ct0_A Non-SMC element 1 homol 35.7 30 0.001 27.2 3.4 16 150-165 12-27 (74)
265 1wgm_A Ubiquitin conjugation f 35.6 15 0.00052 30.2 1.8 47 178-225 20-69 (98)
266 2dmi_A Teashirt homolog 3; zin 35.5 17 0.00058 29.3 2.1 13 251-263 79-91 (115)
267 2jrp_A Putative cytoplasmic pr 35.2 16 0.00056 29.6 1.8 11 154-164 3-13 (81)
268 2w15_A Zinc metalloproteinase 34.7 16 0.00055 33.7 2.0 26 384-409 123-148 (202)
269 1jm7_A BRCA1, breast cancer ty 34.7 15 0.00053 30.0 1.7 12 199-210 39-50 (112)
270 2kre_A Ubiquitin conjugation f 34.7 20 0.0007 29.5 2.4 48 178-226 27-76 (100)
271 1x5n_A Harmonin; PDZ domain, u 34.6 6.9 0.00023 32.5 -0.5 21 360-380 58-78 (114)
272 4dd8_A Disintegrin and metallo 34.6 16 0.00055 34.0 2.0 25 385-409 121-145 (208)
273 1tp5_A Presynaptic density pro 34.5 3 0.0001 35.0 -2.8 19 361-379 57-75 (119)
274 2gtq_A Aminopeptidase N; alani 34.5 9.3 0.00032 43.6 0.4 42 397-438 287-330 (867)
275 2h2b_A Tight junction protein 34.3 3.2 0.00011 34.1 -2.6 19 360-378 55-73 (107)
276 2ysm_A Myeloid/lymphoid or mix 34.3 33 0.0011 28.6 3.7 96 153-284 7-104 (111)
277 2c2l_A CHIP, carboxy terminus 34.3 18 0.00062 34.3 2.4 48 178-226 206-256 (281)
278 2hf1_A Tetraacyldisaccharide-1 34.1 9.3 0.00032 29.9 0.2 40 253-320 9-48 (68)
279 2ecw_A Tripartite motif-contai 33.8 15 0.0005 28.3 1.4 44 181-225 20-71 (85)
280 2i6v_A General secretion pathw 33.6 16 0.00054 28.8 1.5 18 360-377 36-53 (87)
281 2ckl_B Ubiquitin ligase protei 33.5 12 0.00043 33.2 1.0 44 181-224 55-101 (165)
282 2xkx_A Disks large homolog 4; 33.2 4.9 0.00017 44.7 -2.1 38 359-396 348-385 (721)
283 2egp_A Tripartite motif-contai 33.0 16 0.00056 27.8 1.5 26 200-225 31-65 (79)
284 1chc_A Equine herpes virus-1 r 33.0 23 0.00078 26.2 2.3 44 182-225 7-52 (68)
285 1atl_A Atrolysin C; metalloend 32.7 19 0.00065 33.3 2.2 25 385-409 124-148 (202)
286 2ckl_A Polycomb group ring fin 32.7 15 0.00051 30.2 1.3 44 181-224 16-61 (108)
287 2jr6_A UPF0434 protein NMA0874 32.4 10 0.00035 29.6 0.2 42 251-320 7-48 (68)
288 4ic3_A E3 ubiquitin-protein li 32.1 24 0.00083 27.1 2.4 41 182-225 26-67 (74)
289 2d8t_A Dactylidin, ring finger 31.7 24 0.00083 26.5 2.3 27 199-225 33-61 (71)
290 2vz5_A TAX1-binding protein 3; 31.6 7.4 0.00025 34.0 -0.8 24 360-383 81-104 (139)
291 1bud_A Protein (acutolysin A); 30.8 22 0.00074 32.7 2.2 26 384-409 120-145 (197)
292 2ecn_A Ring finger protein 141 30.3 14 0.00048 27.7 0.7 44 181-226 16-61 (70)
293 2kr4_A Ubiquitin conjugation f 30.3 23 0.00079 28.1 2.0 47 178-225 12-60 (85)
294 2csy_A Zinc finger protein 183 30.2 17 0.00059 28.1 1.2 43 181-224 16-60 (81)
295 1jjd_A Metallothionein, SMTA; 30.2 20 0.00067 27.0 1.4 29 182-210 9-38 (55)
296 1qua_A Acutolysin-C, hemorrhag 30.2 22 0.00076 32.6 2.2 26 384-409 122-147 (197)
297 1yp1_A FII; FII hydrolase; 1.9 30.0 23 0.00077 32.7 2.2 26 384-409 122-147 (202)
298 2kjd_A Sodium/hydrogen exchang 29.7 8.2 0.00028 32.6 -0.8 26 360-385 50-75 (128)
299 2i4s_A General secretion pathw 29.6 20 0.00069 29.3 1.6 18 360-377 54-71 (105)
300 1kuf_A Atrolysin E, metallopro 29.6 23 0.00078 32.7 2.2 25 385-409 126-150 (203)
301 1wh1_A KIAA1095 protein; PDZ d 29.3 22 0.00076 29.9 1.9 17 361-377 67-83 (124)
302 2qbw_A PDZ-fibronectin fusion 29.2 5.4 0.00018 36.2 -2.3 22 360-381 40-61 (195)
303 2kiz_A E3 ubiquitin-protein li 29.0 14 0.00048 27.6 0.5 48 252-299 14-61 (69)
304 1uez_A KIAA1526 protein; PDZ d 28.9 19 0.00065 28.9 1.3 20 360-379 52-71 (101)
305 2kjp_A Uncharacterized protein 28.5 23 0.00077 28.5 1.7 18 360-377 17-34 (91)
306 2qt5_A Glutamate receptor-inte 28.2 5.1 0.00017 36.6 -2.6 23 360-382 51-73 (200)
307 2cs3_A Protein C14ORF4, MY039 28.2 35 0.0012 27.7 2.6 32 153-184 15-46 (93)
308 2dw0_A Catrocollastatin; apopt 28.1 22 0.00076 36.9 1.9 26 384-409 124-149 (419)
309 2ep4_A Ring finger protein 24; 28.0 14 0.00049 27.9 0.3 47 253-299 16-62 (74)
310 3oue_A Cytochrome C family pro 27.9 17 0.0006 32.8 1.0 90 202-296 56-156 (158)
311 2ecg_A Baculoviral IAP repeat- 27.9 26 0.00088 26.9 1.8 41 182-225 27-68 (75)
312 2ero_A VAP-1, vascular apoptos 27.9 21 0.00072 37.2 1.7 26 384-409 133-158 (427)
313 3ebh_A PFA-M1, M1 family amino 27.7 17 0.00058 41.7 1.0 43 396-438 294-338 (889)
314 2gvi_A Conserved hypothetical 27.7 12 0.00042 35.1 -0.1 14 197-210 189-202 (204)
315 2f42_A STIP1 homology and U-bo 27.4 24 0.00081 32.6 1.8 48 178-226 104-154 (179)
316 3b34_A Aminopeptidase N; prote 27.2 15 0.00053 41.9 0.6 42 397-438 312-355 (891)
317 3lrq_A E3 ubiquitin-protein li 27.2 17 0.00058 29.6 0.7 46 181-226 23-71 (100)
318 2ct2_A Tripartite motif protei 27.1 22 0.00075 27.6 1.3 28 199-226 37-69 (88)
319 2ckl_A Polycomb group ring fin 27.1 21 0.00073 29.2 1.3 46 252-299 15-60 (108)
320 3gsl_A Disks large homolog 4; 26.9 6.6 0.00023 35.2 -2.1 19 360-378 53-71 (196)
321 2e3x_A Coagulation factor X-ac 26.8 22 0.00077 37.0 1.7 26 384-409 126-151 (427)
322 3fl2_A E3 ubiquitin-protein li 26.7 21 0.00072 30.1 1.2 26 200-225 71-99 (124)
323 2y43_A E3 ubiquitin-protein li 26.6 20 0.00069 28.9 1.0 45 253-299 23-67 (99)
324 1uf1_A KIAA1526 protein; PDZ d 26.4 10 0.00035 32.2 -0.9 21 360-380 63-83 (128)
325 3ov0_A Cytochrome C family pro 26.2 23 0.0008 35.4 1.7 113 176-296 183-316 (318)
326 1qau_A Neuronal nitric oxide s 26.2 10 0.00035 31.2 -0.9 18 361-378 45-62 (112)
327 1g25_A CDK-activating kinase a 25.6 22 0.00075 26.2 1.0 47 181-227 4-57 (65)
328 2kl1_A YLBL protein; structure 25.5 28 0.00096 27.9 1.7 18 360-377 21-38 (94)
329 1b8q_A Protein (neuronal nitri 25.5 8.7 0.0003 32.5 -1.5 22 362-383 53-74 (127)
330 1e4u_A Transcriptional repress 24.8 30 0.001 27.2 1.7 46 181-226 12-63 (78)
331 2js4_A UPF0434 protein BB2007; 24.6 24 0.00081 27.7 1.0 42 251-320 7-48 (70)
332 2l0b_A E3 ubiquitin-protein li 24.3 22 0.00074 28.4 0.8 47 252-298 40-86 (91)
333 3i18_A LMO2051 protein; alpha- 24.1 31 0.001 27.9 1.7 18 360-377 23-40 (100)
334 3b8z_A Protein adamts-5; alpha 24.1 28 0.00095 32.4 1.6 22 385-409 132-153 (217)
335 1p1d_A PDZ45, glutamate recept 23.9 7.1 0.00024 35.6 -2.5 17 361-377 55-71 (196)
336 2dmj_A Poly (ADP-ribose) polym 23.8 18 0.0006 30.5 0.2 21 208-228 20-40 (106)
337 3r0h_A INAD, inactivation-NO-a 23.8 12 0.00042 34.0 -0.9 18 360-377 63-80 (206)
338 4ap4_A E3 ubiquitin ligase RNF 23.7 37 0.0013 28.2 2.2 70 154-226 49-126 (133)
339 3ztg_A E3 ubiquitin-protein li 23.5 16 0.00053 29.0 -0.2 42 181-223 14-60 (92)
340 2zpm_A Regulator of sigma E pr 23.2 31 0.0011 27.0 1.5 18 360-377 21-38 (91)
341 2ecn_A Ring finger protein 141 23.2 35 0.0012 25.4 1.8 44 252-299 15-58 (70)
342 4ayc_A E3 ubiquitin-protein li 23.0 31 0.0011 29.7 1.6 44 253-299 54-97 (138)
343 1z6u_A NP95-like ring finger p 23.0 26 0.00089 31.0 1.1 27 200-226 97-126 (150)
344 2ecm_A Ring finger and CHY zin 23.0 25 0.00086 24.7 0.9 44 253-296 6-50 (55)
345 2pk7_A Uncharacterized protein 23.0 25 0.00086 27.4 0.9 41 252-320 8-48 (69)
346 2djb_A Polycomb group ring fin 22.6 18 0.00061 27.4 -0.0 46 252-299 15-60 (72)
347 2ct2_A Tripartite motif protei 22.6 20 0.00069 27.8 0.3 47 252-298 15-65 (88)
348 2v4b_A Adamts-1; zymogen, prot 22.4 31 0.0011 33.8 1.7 23 384-409 133-155 (300)
349 3id1_A Regulator of sigma E pr 22.3 32 0.0011 27.6 1.5 19 359-377 18-36 (95)
350 3c37_A Peptidase, M48 family; 21.9 24 0.00081 33.9 0.7 25 385-409 83-112 (253)
351 1v9x_A Poly (ADP-ribose) polym 21.6 20 0.00068 30.8 0.0 20 208-227 15-34 (114)
352 1rmd_A RAG1; V(D)J recombinati 21.5 36 0.0012 28.1 1.7 45 181-226 24-71 (116)
353 4ayc_A E3 ubiquitin-protein li 21.4 1.4E+02 0.0047 25.4 5.5 25 201-225 73-99 (138)
354 3shw_A Tight junction protein 21.2 8.1 0.00028 41.0 -3.0 19 360-378 40-58 (468)
355 2rjq_A Adamts-5; metalloprotea 21.1 34 0.0012 34.7 1.7 23 384-409 133-155 (378)
356 2rjp_A Adamts-4; metalloprotea 21.0 35 0.0012 33.7 1.7 22 385-409 134-155 (316)
357 1x4j_A Ring finger protein 38; 20.9 21 0.00073 27.1 0.1 47 251-297 22-68 (75)
358 3hcs_A TNF receptor-associated 20.8 37 0.0013 30.1 1.7 45 181-226 19-66 (170)
359 2d8t_A Dactylidin, ring finger 20.3 34 0.0012 25.7 1.1 45 252-299 15-59 (71)
360 1r55_A ADAM 33; metalloproteas 20.1 41 0.0014 31.2 1.9 24 385-409 124-148 (214)
361 3hct_A TNF receptor-associated 20.1 34 0.0012 28.5 1.2 45 181-226 19-66 (118)
362 3knv_A TNF receptor-associated 20.1 17 0.00059 31.9 -0.7 43 181-224 32-77 (141)
363 2ckl_B Ubiquitin ligase protei 20.0 25 0.00087 31.1 0.4 45 253-299 55-100 (165)
No 1
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.90 E-value=6.6e-24 Score=200.07 Aligned_cols=124 Identities=23% Similarity=0.543 Sum_probs=108.6
Q ss_pred CCCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccccccCCccccCccc
Q 010559 150 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAG 229 (507)
Q Consensus 150 ~~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~C~~~I~~~~~g 229 (507)
....++|.+|+++|....++.++++.||+.||+|..|+++|.+..| .++|++||+.||.++|+++|.+|+++|.+.. .
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~-~ 134 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-V 134 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCCSSC-C
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccCCCc-e
Confidence 4567899999999986667899999999999999999999998876 5899999999999999999999999998753 2
Q ss_pred ceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccc
Q 010559 230 LIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 285 (507)
Q Consensus 230 ~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~ 285 (507)
++.+.+.. ||..||+|..|++.|..|..|+...+|++||..||.++
T Consensus 135 v~~a~~~~----------~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 135 VRRAQDFV----------YHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp CCEETTEE----------CCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred EEecCCCC----------EEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 34555554 49999999999999987888888889999999999864
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.90 E-value=4.9e-24 Score=188.91 Aligned_cols=120 Identities=23% Similarity=0.520 Sum_probs=107.0
Q ss_pred CCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccccccCCccccCcccce
Q 010559 152 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 231 (507)
Q Consensus 152 g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~C~~~I~~~~~g~i 231 (507)
..++|++|+++|..++++.++|+.||+.||+|..|+++|.+..|+.++|++||+.||.++|+++|.+|+++|.+.. ..|
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~ 80 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEV-QRV 80 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTS-CEE
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCc-eEE
Confidence 3579999999998788999999999999999999999999989999999999999999999999999999999643 457
Q ss_pred eeccccccccccCCCccC--CCCCccCCCCCcCCCCCceEEccCCceeccccccc
Q 010559 232 EYRAHPFWLQKYCPSHER--DGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS 284 (507)
Q Consensus 232 ~~~~hpfw~~~yCp~h~H--~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~ 284 (507)
.+.++.| | +.||+|..|++.|. +..|+.. +|++||..++.+
T Consensus 81 ~a~~~~~----------H~~~~CF~C~~C~~~l~-~~~f~~~-~~~~yC~~~~~~ 123 (126)
T 2xqn_T 81 TYNNFSW----------HASTECFLCSCCSKCLI-GQKFMPV-EGMVFCSVECKK 123 (126)
T ss_dssp EETTEEE----------ESSTTTSBCTTTCCBCT-TSEEEEE-TTEEESSHHHHH
T ss_pred ECCCCEe----------eCCCCCcCcCCCCCccC-CCeeEeE-CCEEcchHHhhh
Confidence 7777764 7 99999999999996 7777755 899999977665
No 3
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.89 E-value=4.7e-24 Score=198.82 Aligned_cols=124 Identities=23% Similarity=0.539 Sum_probs=107.6
Q ss_pred CCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccccccCCccccCcccce
Q 010559 152 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 231 (507)
Q Consensus 152 g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~C~~~I~~~~~g~i 231 (507)
+.++|.+|+++|....++.++|+.||+.||+|..|+.+|.+..| .++|++||+.||.++|+++|.+|+++|.+.. .++
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~-~v~ 82 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-VVR 82 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCCTTS-EEE
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccCCCc-EEE
Confidence 46799999999986667899999999999999999999998776 6899999999999999999999999998753 234
Q ss_pred eeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccccC
Q 010559 232 EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM 287 (507)
Q Consensus 232 ~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~ 287 (507)
.+.+.. ||..||+|..|++.|..|+.|+.+.+|++||..||.++++
T Consensus 83 ~a~~~~----------~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~ 128 (169)
T 2rgt_A 83 RAQDFV----------YHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQ 128 (169)
T ss_dssp EETTEE----------EEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHH
T ss_pred EcCCce----------EeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhh
Confidence 555554 4899999999999998788888788999999999998654
No 4
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.89 E-value=6e-24 Score=189.39 Aligned_cols=121 Identities=17% Similarity=0.481 Sum_probs=106.6
Q ss_pred CCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCC--cceeecCCccccccccccccCc--cccccCCccccCcc
Q 010559 153 YRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHP--KCDVCQNFIPTNSA 228 (507)
Q Consensus 153 ~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~--~~f~~~~gk~yCk~CY~~~f~p--kC~~C~~~I~~~~~ 228 (507)
.++|++|+++|..+.++.++++.||+.||+|..|+.+|.. ..|+.++|++||+.||.++|++ +|.+|+++|.+.+
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e- 80 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE- 80 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS-
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc-
Confidence 4689999999975567999999999999999999999963 5788899999999999999999 9999999998743
Q ss_pred cceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccc
Q 010559 229 GLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 285 (507)
Q Consensus 229 g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~ 285 (507)
.++.+.++.| |..||+|..|++.|+.+.+|+.. +|++||..||.+.
T Consensus 81 ~~~~a~~~~~----------H~~CF~C~~C~~~L~~g~~f~~~-~~~~~C~~c~~~~ 126 (131)
T 2xjy_A 81 MTMRVKDKVY----------HLECFKCAACQKHFCVGDRYLLI-NSDIVCEQDIYEW 126 (131)
T ss_dssp EEEEETTEEE----------EGGGCBCTTTCCBCCTTCEEEEE-TTEEEEGGGHHHH
T ss_pred eeEeeCCceE----------CccCcccCCCCCCCCCCCEEEEE-CCEEEcHHHHHHH
Confidence 3567777764 89999999999999778888876 7999999999874
No 5
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.87 E-value=3.3e-23 Score=196.37 Aligned_cols=124 Identities=19% Similarity=0.510 Sum_probs=108.0
Q ss_pred CCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCC--cceeecCCccccccccccccCc--cccccCCccccCc
Q 010559 152 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHP--KCDVCQNFIPTNS 227 (507)
Q Consensus 152 g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~--~~f~~~~gk~yCk~CY~~~f~p--kC~~C~~~I~~~~ 227 (507)
..++|.+|+++|....++.++++.||+.||+|..|+++|.. ..|+.++|++||+.||.++|++ +|..|+++|.+.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE 83 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTS
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCc
Confidence 45799999999975567999999999999999999999985 6788899999999999999999 7999999998643
Q ss_pred ccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccccC
Q 010559 228 AGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM 287 (507)
Q Consensus 228 ~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~ 287 (507)
.++.+.++.| |..||+|..|++.|..+..|+.. ++++||..||.+.+.
T Consensus 84 -~~i~a~~~~~----------H~~CF~C~~C~~~L~~g~~f~~~-~g~~yC~~c~~~~~~ 131 (188)
T 1rut_X 84 -LVMRAQGNVY----------HLKCFTCSTCRNRLVPGDRFHYI-NGSLFCEHDRPTALI 131 (188)
T ss_dssp -EEEEETTEEE----------CGGGCBCTTTCCBCCTTCEEEEE-TTEEEEGGGCCTTTC
T ss_pred -EEEEcCCCEE----------eCCCCeECCCCCCCCCCCeEEEE-CCeEECHHHHHHHhc
Confidence 3566777654 89999999999999777888865 789999999998543
No 6
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.87 E-value=9.8e-23 Score=193.61 Aligned_cols=133 Identities=20% Similarity=0.427 Sum_probs=113.9
Q ss_pred CCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCcc---------------
Q 010559 151 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPK--------------- 215 (507)
Q Consensus 151 ~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pk--------------- 215 (507)
.+.++|.+|+++|+.++.+.++++.||+.||+|..|+.+|....|+.+++++||+.||.++|+|+
T Consensus 5 ~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~ 84 (192)
T 1b8t_A 5 GGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDK 84 (192)
T ss_dssp CCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCC
T ss_pred CCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCC
Confidence 35689999999998788899999999999999999999999988999999999999999999887
Q ss_pred ---------------------------------ccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcC
Q 010559 216 ---------------------------------CDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERME 262 (507)
Q Consensus 216 ---------------------------------C~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l 262 (507)
|..|+++|.... .+.+.+.. ||..||+|..|++.|
T Consensus 85 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~--~v~a~~~~----------~H~~CF~C~~C~~~L 152 (192)
T 1b8t_A 85 GESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAE--KVIGAGKS----------WHKSCFRCAKCGKSL 152 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSS--CEEETTEE----------ECTTTCBCTTTCCBC
T ss_pred CcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcE--EEecCCCc----------cchhcCCccccCCCC
Confidence 668888887542 45566654 499999999999999
Q ss_pred CCCCceEEccCCceecccccccccCCCCCCccccHHH
Q 010559 263 PRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 299 (507)
Q Consensus 263 ~~g~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~~~I 299 (507)
. +..|+. .+|++||..||.+ ++.++|..|.+.+
T Consensus 153 ~-~~~~~~-~~g~~yC~~cy~~--~f~~kc~~C~~~~ 185 (192)
T 1b8t_A 153 E-STTLAD-KDGEIYCKGCYAK--NFGPKGFGFGQGA 185 (192)
T ss_dssp C-SSSEEE-ETTEEEEHHHHHH--HTCCCCCCCCCCC
T ss_pred C-CCcccc-cCCEEeCHHHHHH--hcCCcCCCCCCcc
Confidence 6 446774 5899999999998 5689999998543
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.82 E-value=1.1e-20 Score=160.85 Aligned_cols=98 Identities=27% Similarity=0.590 Sum_probs=87.8
Q ss_pred CCCCcCccCCccccc-CceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccccccCCccccCccc
Q 010559 151 SGYRICAGCNTEIGH-GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAG 229 (507)
Q Consensus 151 ~g~~~C~~C~k~I~~-g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~C~~~I~~~~~g 229 (507)
.+.++|.+|+++|.. +.++.++++.||+.||+|..|+++|.+..|+..+|++||+.||.++|+++|.+|+++|..++ .
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~-~ 81 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGD-Q 81 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSS-C
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCC-e
Confidence 356899999999975 78999999999999999999999999888999999999999999999999999999998532 3
Q ss_pred ceeeccccccccccCCCccCCCCCccCCCC
Q 010559 230 LIEYRAHPFWLQKYCPSHERDGTPRCCSCE 259 (507)
Q Consensus 230 ~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~ 259 (507)
.|.+.+..| |+.||+|..|+
T Consensus 82 ~~~a~~~~~----------H~~CF~C~~C~ 101 (101)
T 2cup_A 82 NVEYKGTVW----------HKDCFSGPSSG 101 (101)
T ss_dssp EEESSSCEE----------ETTTCCCTTCC
T ss_pred EEEeCCcch----------HHhCCCCCCCC
Confidence 577777764 99999999996
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=1.1e-18 Score=154.33 Aligned_cols=107 Identities=15% Similarity=0.269 Sum_probs=89.0
Q ss_pred CCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCC--CcceeecCCccccccccccccCc--cccccCCccccCc
Q 010559 152 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPIT--DVEFSMSGNRPYHKHCYKEQHHP--KCDVCQNFIPTNS 227 (507)
Q Consensus 152 g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~--~~~f~~~~gk~yCk~CY~~~f~p--kC~~C~~~I~~~~ 227 (507)
..++|++|+++|..+.++.++++.||+.||+|..|+.+|. +..|+.++|++||+.||.++|++ +|++|+++|.+..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 4579999999997666799999999999999999999997 35788899999999999999999 9999999999743
Q ss_pred ccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceeccccccccc
Q 010559 228 AGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 286 (507)
Q Consensus 228 ~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v 286 (507)
+++.+. ..+ .|.+|+.. ++++||..|+.+..
T Consensus 84 ---~~~~g~-----------------------~~l-~g~~f~~~-~~~~yC~~~~~~~~ 114 (122)
T 1m3v_A 84 ---VMVVGE-----------------------PTL-MGGEFGDE-DERLITRLENTQFD 114 (122)
T ss_dssp ---SSSSSS-----------------------SSC-CSCTTCCT-TCCCCEECTTTTTT
T ss_pred ---eEEcCC-----------------------cCC-CCCccEec-CCEeEccCcchhch
Confidence 222221 123 47888755 78999999998753
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=5.5e-17 Score=141.68 Aligned_cols=102 Identities=15% Similarity=0.343 Sum_probs=84.2
Q ss_pred CCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCC--cceeecCCccccccccccccCccccccCCccccCccc
Q 010559 152 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAG 229 (507)
Q Consensus 152 g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~--~~f~~~~gk~yCk~CY~~~f~pkC~~C~~~I~~~~~g 229 (507)
+.++|.+|+++|....++.++++.||+.||+|..|+.+|.+ ..|+.++|+|||+.||.++|+|+|..|.. +.
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~---~~--- 75 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG---GD--- 75 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS---CS---
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC---Cc---
Confidence 35789999999986668999999999999999999999985 57888999999999999999999999862 11
Q ss_pred ceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccc
Q 010559 230 LIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 285 (507)
Q Consensus 230 ~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~ 285 (507)
+| . |.+.+..|++|+.. ++++||..|+.+.
T Consensus 76 ~~----------------------~---~~~~~~~g~~f~~~-~~~~~C~~~~~~~ 105 (114)
T 1j2o_A 76 VM----------------------V---VGEPTLMGGEFGDE-DERLITRLENTQF 105 (114)
T ss_dssp CC----------------------C---SSCSSTTSSBCCCS-SSCCCEEEECTTC
T ss_pred ee----------------------E---cCCccCCCCeeEEc-CCEeecchhhhcc
Confidence 11 1 33554458888754 7899999999874
No 10
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=8.5e-16 Score=124.27 Aligned_cols=71 Identities=21% Similarity=0.506 Sum_probs=66.4
Q ss_pred CcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccc-cccccccCccccccCCccc
Q 010559 154 RICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHK-HCYKEQHHPKCDVCQNFIP 224 (507)
Q Consensus 154 ~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk-~CY~~~f~pkC~~C~~~I~ 224 (507)
|+|.+|+++|..++.|.++++.||+.||+|..|+++|.+..|+..+|++||+ .||.++|+++|.+|++.+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 5899999999878999999999999999999999999988899999999999 6999999999999996654
No 11
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=124.26 Aligned_cols=78 Identities=23% Similarity=0.428 Sum_probs=71.6
Q ss_pred CCccCCCCC-CCCCCcCccCCccccc-CceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010559 141 GNIFQPFPF-FSGYRICAGCNTEIGH-GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 218 (507)
Q Consensus 141 gsv~~p~~~-~~g~~~C~~C~k~I~~-g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~ 218 (507)
|++|+..++ ....++|.+|+++|.. +.++.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|++
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 2 SSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred CceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 678999888 6677899999999973 68899999999999999999999999989999999999999999999999974
No 12
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.5e-15 Score=124.29 Aligned_cols=78 Identities=19% Similarity=0.373 Sum_probs=71.4
Q ss_pred CCCccCCCCCCCCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeec-CCccccccccccccCccccc
Q 010559 140 SGNIFQPFPFFSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMS-GNRPYHKHCYKEQHHPKCDV 218 (507)
Q Consensus 140 ~gsv~~p~~~~~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~-~gk~yCk~CY~~~f~pkC~~ 218 (507)
.|++|+..++....++|++|+++|. +++|.++++.||+.||+|..|+++|.+..|... ++++||+.||.++|+|+|++
T Consensus 2 ~g~~yC~~~y~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 2 SSGSSGEGCYVATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CCCCCCCCCCCSSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred cCCEECHHHhhcCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 5788999888778899999999996 789999999999999999999999998888765 78999999999999999974
No 13
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.58 E-value=5.3e-16 Score=127.02 Aligned_cols=74 Identities=22% Similarity=0.480 Sum_probs=58.0
Q ss_pred CCCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccccccCCcc
Q 010559 150 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFI 223 (507)
Q Consensus 150 ~~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~C~~~I 223 (507)
..+.++|.+|+++|..++.+.++++.||+.||+|..|+++|....|+..++++||+.||.++|+|+|.+|++..
T Consensus 4 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 4 WGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp ----CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 34568999999999888899999999999999999999999988898999999999999999999999998764
No 14
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=3.2e-15 Score=121.76 Aligned_cols=77 Identities=27% Similarity=0.523 Sum_probs=70.6
Q ss_pred CCccCCCCC-CCCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010559 141 GNIFQPFPF-FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 218 (507)
Q Consensus 141 gsv~~p~~~-~~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~ 218 (507)
|++|+..++ ....++|++|+++|. +++|.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|+.
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 2 SSGSSGKDFLAMFSPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred CCccchhHHhhhcCCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 678898888 556789999999996 68899999999999999999999999888999999999999999999999974
No 15
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=4.3e-15 Score=121.04 Aligned_cols=77 Identities=19% Similarity=0.424 Sum_probs=70.8
Q ss_pred CCccCCCCC-CCCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010559 141 GNIFQPFPF-FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 218 (507)
Q Consensus 141 gsv~~p~~~-~~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~ 218 (507)
|++|+..++ ....++|.+|+++|. +++|.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+|+|+.
T Consensus 2 g~~yC~~cy~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CCCSCCCCCCCCSSCCCTTTCCCCC-SCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred CcEEcHHHHccccCCcCCCCCCEec-CcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 678999888 567799999999996 57899999999999999999999999888999999999999999999999973
No 16
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=5.3e-15 Score=119.67 Aligned_cols=69 Identities=19% Similarity=0.566 Sum_probs=64.1
Q ss_pred CCCcCccCCccccc---CceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccccccC
Q 010559 152 GYRICAGCNTEIGH---GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQ 220 (507)
Q Consensus 152 g~~~C~~C~k~I~~---g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~C~ 220 (507)
..++|.+|+++|.. .++|.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|..++
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 45799999999973 3889999999999999999999999988899999999999999999999999885
No 17
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=5.5e-15 Score=121.29 Aligned_cols=68 Identities=32% Similarity=0.738 Sum_probs=62.6
Q ss_pred CCCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010559 150 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 218 (507)
Q Consensus 150 ~~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~ 218 (507)
..+.++|.+|+++|..+++|.++++.||+.||+|..|+.+|.+ .|+.+++++||+.||.++|+++|..
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 4467899999999988899999999999999999999999986 5788999999999999999999974
No 18
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=7.2e-15 Score=122.79 Aligned_cols=68 Identities=26% Similarity=0.568 Sum_probs=63.4
Q ss_pred CCCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010559 150 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 218 (507)
Q Consensus 150 ~~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~ 218 (507)
....++|.+|+++| .+++|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+|+|..
T Consensus 22 ~~~~~~C~~C~~~I-~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 22 GKRTPMCAHCNQVI-RGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp TTCCCBBSSSCCBC-CSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCCCCccCCCEe-cceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 45678999999999 589999999999999999999999999888999999999999999999999963
No 19
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=8.7e-15 Score=118.31 Aligned_cols=68 Identities=18% Similarity=0.465 Sum_probs=63.3
Q ss_pred CCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccc-cccccccCccccc
Q 010559 151 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHK-HCYKEQHHPKCDV 218 (507)
Q Consensus 151 ~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk-~CY~~~f~pkC~~ 218 (507)
...++|.+|+++|..++.|.++++.||+.||+|..|+++|.+..|+..++++||+ .||.++|+|+|.+
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 4568999999999878999999999999999999999999988898999999999 7999999999974
No 20
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=8.4e-15 Score=116.11 Aligned_cols=67 Identities=25% Similarity=0.579 Sum_probs=62.1
Q ss_pred CCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010559 151 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 218 (507)
Q Consensus 151 ~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~ 218 (507)
.+.++|.+|+++|. ++.|.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|++
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 3 SGSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CCcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 35679999999996 67899999999999999999999999888999999999999999999999974
No 21
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.7e-14 Score=118.03 Aligned_cols=77 Identities=21% Similarity=0.382 Sum_probs=70.2
Q ss_pred CCccCCCCC-CCCCCcCccCCcccccC-ceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCcccc
Q 010559 141 GNIFQPFPF-FSGYRICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 217 (507)
Q Consensus 141 gsv~~p~~~-~~g~~~C~~C~k~I~~g-~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~ 217 (507)
+++||..++ ....++|.+|+++|..+ .+|.++++.||+.||+|..|+++|....|+..++++||+.||.++|+|+|.
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 578998888 56678999999999765 679999999999999999999999998899999999999999999999985
No 22
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1.2e-14 Score=115.33 Aligned_cols=66 Identities=23% Similarity=0.531 Sum_probs=61.5
Q ss_pred CCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010559 152 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 218 (507)
Q Consensus 152 g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~ 218 (507)
+.++|.+|+++|. ++.|.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+|+|..
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 4 GSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 5679999999996 67899999999999999999999999888999999999999999999999974
No 23
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1.9e-14 Score=114.81 Aligned_cols=67 Identities=31% Similarity=0.678 Sum_probs=62.2
Q ss_pred CCCcCccCCcccccC-ceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010559 152 GYRICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 218 (507)
Q Consensus 152 g~~~C~~C~k~I~~g-~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~ 218 (507)
..++|.+|+++|..+ .+|.++++.||+.||+|..|+++|....|+..++++||+.||.++|+|+|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 457999999999875 6899999999999999999999999988999999999999999999999973
No 24
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=1.5e-14 Score=115.37 Aligned_cols=67 Identities=25% Similarity=0.595 Sum_probs=62.3
Q ss_pred CCCcCccCCcccccC-ceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010559 152 GYRICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 218 (507)
Q Consensus 152 g~~~C~~C~k~I~~g-~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~ 218 (507)
..++|.+|+++|..+ .++.++++.||+.||+|..|+++|....|+..++++||+.||.++|+|+|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 457999999999874 8899999999999999999999999988999999999999999999999973
No 25
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=3.2e-14 Score=119.10 Aligned_cols=73 Identities=21% Similarity=0.398 Sum_probs=66.4
Q ss_pred CCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccccccCCcc
Q 010559 151 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFI 223 (507)
Q Consensus 151 ~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~C~~~I 223 (507)
.+.++|.+|++.|..++.|.++++.||+.||+|..|+.+|....|+..++++||+.||.++|+++|..+..+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g 85 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFG 85 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCC
T ss_pred CCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcC
Confidence 4568999999999877889999999999999999999999988888999999999999999999999665443
No 26
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=2e-14 Score=116.08 Aligned_cols=67 Identities=18% Similarity=0.395 Sum_probs=60.2
Q ss_pred CCCCcCccCCccccc-CceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCcccc
Q 010559 151 SGYRICAGCNTEIGH-GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 217 (507)
Q Consensus 151 ~g~~~C~~C~k~I~~-g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~ 217 (507)
...++|.+|+++|.. +.++.++++.||+.||+|..|+++|....|+..+|++||+.||.++|+|+|.
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 356899999999985 5678899999999999999999999988899999999999999999999996
No 27
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=2.5e-14 Score=114.28 Aligned_cols=66 Identities=32% Similarity=0.700 Sum_probs=60.8
Q ss_pred CCCCcCccCCccccc---CceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccc
Q 010559 151 SGYRICAGCNTEIGH---GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKC 216 (507)
Q Consensus 151 ~g~~~C~~C~k~I~~---g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC 216 (507)
.+.++|.+|+++|.. ..+|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 356899999999974 388999999999999999999999999899999999999999999999986
No 28
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.46 E-value=1.8e-14 Score=113.16 Aligned_cols=63 Identities=27% Similarity=0.561 Sum_probs=59.2
Q ss_pred CCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCcc
Q 010559 152 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPK 215 (507)
Q Consensus 152 g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pk 215 (507)
..++|++|+++|. ++++.++++.||+.||+|..|+++|.+..|+..+|++||+.||.++|+|+
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 4 GVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 4579999999997 88999999999999999999999999888999999999999999999985
No 29
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=2.1e-14 Score=117.07 Aligned_cols=67 Identities=19% Similarity=0.463 Sum_probs=61.6
Q ss_pred CCCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCcccc
Q 010559 150 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 217 (507)
Q Consensus 150 ~~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~ 217 (507)
....++|.+|+++|. +++|.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+|++.
T Consensus 12 ~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 12 AQKLPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCCCCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 345689999999996 6799999999999999999999999988888999999999999999999875
No 30
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=8.1e-14 Score=116.12 Aligned_cols=67 Identities=21% Similarity=0.521 Sum_probs=61.8
Q ss_pred CCCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCcccc
Q 010559 150 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 217 (507)
Q Consensus 150 ~~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~ 217 (507)
....++|.+|++.|. +++|.++++.||+.||+|..|+++|....|+..++++||+.||.++|+|+|.
T Consensus 22 ~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 22 AQRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CCSCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CCcCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 445689999999996 6889999999999999999999999988888899999999999999999986
No 31
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=7e-14 Score=114.19 Aligned_cols=77 Identities=23% Similarity=0.430 Sum_probs=68.3
Q ss_pred CCccCCCCC-CCCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCC-ccee-ecCCccccccccccccCcccc
Q 010559 141 GNIFQPFPF-FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD-VEFS-MSGNRPYHKHCYKEQHHPKCD 217 (507)
Q Consensus 141 gsv~~p~~~-~~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~-~~f~-~~~gk~yCk~CY~~~f~pkC~ 217 (507)
+++||..++ ....++|.+|+++|. +++|.++++.||+.||+|..|+++|.. ..|. ..++++||+.||.++|++.|.
T Consensus 2 ~~~yC~~~y~~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 2 SSGSSGKDYWGKFGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp CCCCCCCCSSCCSSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred CCccchhHHhhhcCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 567898888 567789999999997 889999999999999999999999974 5676 489999999999999999886
Q ss_pred c
Q 010559 218 V 218 (507)
Q Consensus 218 ~ 218 (507)
+
T Consensus 81 g 81 (81)
T 1x6a_A 81 G 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 32
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=7e-14 Score=111.07 Aligned_cols=66 Identities=32% Similarity=0.689 Sum_probs=60.7
Q ss_pred CCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCcccc
Q 010559 151 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 217 (507)
Q Consensus 151 ~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~ 217 (507)
.+.++|.+|+++|. +++|.++++.||+.||+|..|+.+|.+..|+.+++++||+.||.++|++++.
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 35689999999996 7899999999999999999999999998899899999999999999988763
No 33
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=2.1e-13 Score=112.15 Aligned_cols=68 Identities=19% Similarity=0.386 Sum_probs=60.9
Q ss_pred CCCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCccee--ecCCccccccccccccCcccc
Q 010559 150 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFS--MSGNRPYHKHCYKEQHHPKCD 217 (507)
Q Consensus 150 ~~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~--~~~gk~yCk~CY~~~f~pkC~ 217 (507)
..+.++|.+|++.|+.++.+.++++.||+.||+|..|+++|....|+ ..++++||+.||.++|.+-+.
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~ 81 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPSS 81 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCCC
Confidence 45678999999999888889999999999999999999999998887 479999999999998886553
No 34
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=9.6e-14 Score=113.42 Aligned_cols=66 Identities=21% Similarity=0.329 Sum_probs=60.1
Q ss_pred CCCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCcccc
Q 010559 150 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 217 (507)
Q Consensus 150 ~~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~ 217 (507)
..+.++|.+|+++|. +++|.++++.||+.||+|..|+.+|.+..| .+++++||+.||.++|+|++.
T Consensus 12 ~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 12 GLGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADAR-ELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTCE-EETTEEECHHHHHTTSCCSSC
T ss_pred ccCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCCE-eECCEEeCHHHHHHhCCCCCC
Confidence 345689999999997 889999999999999999999999998765 789999999999999999775
No 35
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3e-13 Score=110.67 Aligned_cols=80 Identities=28% Similarity=0.541 Sum_probs=65.3
Q ss_pred CCccccccccccccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceec
Q 010559 199 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 278 (507)
Q Consensus 199 ~gk~yCk~CY~~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C 278 (507)
+|+|||+.||.++|+++|..|+++|.+.. .++.+.+.. ||..||+|..|++.|. +..|+.. ++++||
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~-~~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~f~~~-~~~~~C 67 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDS-RELFYEDRH----------FHEGCFRCCRCQRSLA-DEPFTCQ-DSELLC 67 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSC-CBCCCSSCC----------CBTTTSBCTTTCCBCS-SCCEEEE-TTEEEE
T ss_pred CCceechhHhCcccCCcCccCCCccccCc-EEEEeCCcc----------ccccCCeecCCCCccC-CCccEee-CCEEEC
Confidence 58999999999999999999999998421 345555554 4999999999999996 6677655 899999
Q ss_pred ccccccccCCCCCCc
Q 010559 279 LECLDSAIMDTHECQ 293 (507)
Q Consensus 279 ~~C~~~~v~~t~~C~ 293 (507)
..||.+. +.++|+
T Consensus 68 ~~c~~~~--~~~~C~ 80 (82)
T 2ehe_A 68 NDCYCSA--FSSGPS 80 (82)
T ss_dssp TTTSSCC--GGGSSC
T ss_pred HHHHhhh--cCCCCC
Confidence 9999884 467775
No 36
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.6e-13 Score=109.61 Aligned_cols=70 Identities=21% Similarity=0.487 Sum_probs=63.0
Q ss_pred CCccCCCCC-CCCCCcCccCCccccc----CceeeecCceeccCCcccCCCCCCCCCcceeecCCcccccccccc
Q 010559 141 GNIFQPFPF-FSGYRICAGCNTEIGH----GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKE 210 (507)
Q Consensus 141 gsv~~p~~~-~~g~~~C~~C~k~I~~----g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~ 210 (507)
+++||..++ ....++|++|+++|.. ..++.++++.||+.||+|..|+++|.+..|+..++++||+.||.+
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred CCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 568898888 5667999999999973 388999999999999999999999999889999999999999964
No 37
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=2e-13 Score=108.91 Aligned_cols=67 Identities=21% Similarity=0.536 Sum_probs=59.3
Q ss_pred CCCcCccCCcccccC-ceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCcccccc
Q 010559 152 GYRICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVC 219 (507)
Q Consensus 152 g~~~C~~C~k~I~~g-~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~C 219 (507)
+.++|.+|+++|... .++.++++.||+.||+|..|+++|.+..|+..++++||+.||.++| .+|..+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~-~~~~~~ 71 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL-ESGPSS 71 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH-HTCSSC
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH-ccCCCC
Confidence 567999999999764 6899999999999999999999998888999999999999999887 455544
No 38
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=2.8e-13 Score=110.56 Aligned_cols=75 Identities=13% Similarity=0.274 Sum_probs=64.0
Q ss_pred CCccccccccccccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceec
Q 010559 199 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 278 (507)
Q Consensus 199 ~gk~yCk~CY~~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C 278 (507)
++.+||+.||.++|+++|..|+++|.+. .+.+.+.. ||..||+|..|++.|..+..|++..++++||
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~---~~~a~~~~----------~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C 67 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGP---FMVAGEFK----------YHPECFACMSCKVIIEDGDAYALVQHATLYC 67 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSC---CBCCTTCC----------BCTTSCBCTTTCCBCCTTSCEEECSSSCEEE
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCce---EEEECCce----------eccccCCccCCCCccCCCCcEEEeeCCEEEC
Confidence 4789999999999999999999999953 46666665 4999999999999997677777556899999
Q ss_pred cccccccc
Q 010559 279 LECLDSAI 286 (507)
Q Consensus 279 ~~C~~~~v 286 (507)
..||.+.+
T Consensus 68 ~~c~~~~~ 75 (81)
T 1x6a_A 68 GKCHNEVV 75 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998854
No 39
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=3.7e-13 Score=109.49 Aligned_cols=78 Identities=19% Similarity=0.507 Sum_probs=65.8
Q ss_pred CCccccccccccccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceec
Q 010559 199 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 278 (507)
Q Consensus 199 ~gk~yCk~CY~~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C 278 (507)
+|++||+.||.++|+++|..|+++|.+. .|.+.+.. ||..||+|..|++.|. +..|+. .++++||
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~---~v~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~~-~~~~~yC 65 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQG---GVTYRDQP----------WHRECLVCTGCQTPLA-GQQFTS-RDEDPYC 65 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSC---CEESSSSE----------ECTTTCBCSSSCCBCT-TCCEEE-CSSSEEE
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCc---EEEECCch----------hhhhhCCcccCCCcCC-CCeeEe-ECCEEEC
Confidence 5899999999999999999999999874 46666654 4999999999999995 667775 4899999
Q ss_pred ccccccccCCCCCCc
Q 010559 279 LECLDSAIMDTHECQ 293 (507)
Q Consensus 279 ~~C~~~~v~~t~~C~ 293 (507)
..||.+ ++.+.|.
T Consensus 66 ~~cy~~--~f~~~c~ 78 (80)
T 2cuq_A 66 VACFGE--LFASGPS 78 (80)
T ss_dssp HHHHHH--HTTCSTT
T ss_pred HHHHHH--HcCCCCC
Confidence 999998 4567775
No 40
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.37 E-value=1.9e-13 Score=129.44 Aligned_cols=74 Identities=22% Similarity=0.447 Sum_probs=68.9
Q ss_pred CCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccccccCCccc
Q 010559 151 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIP 224 (507)
Q Consensus 151 ~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~C~~~I~ 224 (507)
.+.++|.+|+++|..++.|.++++.||+.||+|..|+++|....|+..++++||+.||.++|+++|.+|+++|-
T Consensus 113 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~g 186 (192)
T 1b8t_A 113 GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAG 186 (192)
T ss_dssp CCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCCC
T ss_pred CCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCccc
Confidence 45688999999998788899999999999999999999998888999999999999999999999999999863
No 41
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.35 E-value=4.4e-13 Score=107.86 Aligned_cols=63 Identities=27% Similarity=0.591 Sum_probs=56.8
Q ss_pred CCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCC-CcceeecCCccccccccccccCcc
Q 010559 152 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPIT-DVEFSMSGNRPYHKHCYKEQHHPK 215 (507)
Q Consensus 152 g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~-~~~f~~~~gk~yCk~CY~~~f~pk 215 (507)
+.++|++|+++|. +++|.++++.||+.||+|..|+.+|. +..|+..++++||+.||.+++...
T Consensus 4 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 4 GSSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp SCCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred CcCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 4679999999995 68999999999999999999999998 678888999999999998877643
No 42
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.34 E-value=6.2e-13 Score=108.18 Aligned_cols=79 Identities=16% Similarity=0.281 Sum_probs=66.2
Q ss_pred CCccccccccccccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceec
Q 010559 199 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 278 (507)
Q Consensus 199 ~gk~yCk~CY~~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C 278 (507)
+|++||+.||.++|+++|..|+++|.+. .|.+.+..| |..||+|..|++.|.. ..|+.. ++++||
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~---~v~a~~~~~----------H~~CF~C~~C~~~L~~-~~~~~~-~~~~yC 65 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLEN---YLSAMDTVW----------HPECFVCGDCFTSFST-GSFFEL-DGRPFC 65 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSS---CEEETTEEE----------CTTTCBCSSSCCBSCS-SCCEES-SSCEEC
T ss_pred CCCccchhHHhhhcCCccccCCCeecce---eEEECCCeE----------ecCcCChhhCCCCCCC-CcEEeE-CCEEEC
Confidence 5789999999999999999999999974 466766653 9999999999999964 467755 899999
Q ss_pred ccccccccCCCCCCcc
Q 010559 279 LECLDSAIMDTHECQP 294 (507)
Q Consensus 279 ~~C~~~~v~~t~~C~~ 294 (507)
..||.+. +.++|+.
T Consensus 66 ~~~y~~~--f~~~C~~ 79 (80)
T 1x3h_A 66 ELHYHHR--RGSGPSS 79 (80)
T ss_dssp HHHHHHH--HSSSCCC
T ss_pred HHHHHHH--cCCCCCC
Confidence 9999884 4677753
No 43
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.34 E-value=7.6e-13 Score=108.11 Aligned_cols=79 Identities=15% Similarity=0.301 Sum_probs=66.1
Q ss_pred CCccccccccccccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceec
Q 010559 199 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 278 (507)
Q Consensus 199 ~gk~yCk~CY~~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C 278 (507)
+|++||+.||. ++.++|..|+++|.+. ++.+.+..| |..||+|..|++.|. +..|+...+|++||
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~f~~~~~g~~yC 66 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDR---ILRAMGKAY----------HPGCFTCVVCHRGLD-GIPFTVDATSQIHC 66 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSC---CEEETTEEE----------CTTTCBCSSSCCBCT-TSCEECCTTCCCEE
T ss_pred cCCEECHHHhh-cCCCccccCCCeecce---eEEECCccc----------cHHhcCcccCCCccC-CCeeEECCCCEEEC
Confidence 68999999999 7999999999999863 567776654 999999999999995 66676544789999
Q ss_pred ccccccccCCCCCCcc
Q 010559 279 LECLDSAIMDTHECQP 294 (507)
Q Consensus 279 ~~C~~~~v~~t~~C~~ 294 (507)
..||.+ .+.++|+.
T Consensus 67 ~~cy~~--~f~~~C~~ 80 (81)
T 2dlo_A 67 IEDFHR--KFASGPSS 80 (81)
T ss_dssp HHHHHH--HTTSSSCC
T ss_pred HHHHHH--HhcCcCCC
Confidence 999988 45788863
No 44
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=116.26 Aligned_cols=64 Identities=22% Similarity=0.541 Sum_probs=57.1
Q ss_pred CCCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCC--CcceeecCCccccccccccccC
Q 010559 150 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPIT--DVEFSMSGNRPYHKHCYKEQHH 213 (507)
Q Consensus 150 ~~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~--~~~f~~~~gk~yCk~CY~~~f~ 213 (507)
....++|.+|+++|....++.++++.||+.||+|..|+.+|. +..|+.++|++||+.||.++|+
T Consensus 58 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 445689999999997666799999999999999999999997 3578889999999999999885
No 45
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.31 E-value=8.2e-13 Score=104.69 Aligned_cols=63 Identities=19% Similarity=0.438 Sum_probs=56.7
Q ss_pred CCCCcCccCCcccccCc-eeeecCceeccCCcccCCCCCCCCCcceeecCCccccccccccccC
Q 010559 151 SGYRICAGCNTEIGHGR-YLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH 213 (507)
Q Consensus 151 ~g~~~C~~C~k~I~~g~-~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~ 213 (507)
...++|.+|+++|..++ ++.++++.||+.||+|..|+++|....|+..+|++||+.||.++|+
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 45679999999997665 5789999999999999999999998888899999999999998875
No 46
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=105.41 Aligned_cols=74 Identities=20% Similarity=0.444 Sum_probs=61.2
Q ss_pred CCccccccccccccCccccccCCccccC--cccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCce
Q 010559 199 GNRPYHKHCYKEQHHPKCDVCQNFIPTN--SAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRK 276 (507)
Q Consensus 199 ~gk~yCk~CY~~~f~pkC~~C~~~I~~~--~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~ 276 (507)
+++|||+.||.++|+++|.+|+++|.+. ....+.+.+.. ||..||+|..|++.|. +..|+.. +|++
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~f~~~-~~~~ 68 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQS----------WHDYCFHCKKCSVNLA-NKRFVFH-QEQV 68 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEE----------EETTTCBCSSSCCBCT-TSCCCEE-TTEE
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcce----------eCcccCEehhcCCCCC-CCccEeE-CCEE
Confidence 4789999999999999999999999961 11356666665 3999999999999996 6677754 8999
Q ss_pred eccccccc
Q 010559 277 LCLECLDS 284 (507)
Q Consensus 277 ~C~~C~~~ 284 (507)
||..||.+
T Consensus 69 yC~~cy~~ 76 (77)
T 2egq_A 69 YCPDCAKK 76 (77)
T ss_dssp CCHHHHHH
T ss_pred EChHHhcc
Confidence 99999865
No 47
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.28 E-value=2.5e-12 Score=105.05 Aligned_cols=79 Identities=16% Similarity=0.390 Sum_probs=63.9
Q ss_pred CCccccccccccccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceec
Q 010559 199 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 278 (507)
Q Consensus 199 ~gk~yCk~CY~~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C 278 (507)
++.+||+.||.++|+++|..|+++|.... .++.+.+.. ||..||+|..|++.|.. ..|+.. ++++||
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~~a~~~~----------~H~~CF~C~~C~~~L~~-~~~~~~-~~~~yC 67 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGD-QNVEYKGTV----------WHKDCFTCSNCKQVIGT-GSFFPK-GEDFYC 67 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSS-CEEECSSCE----------EETTTCCCSSSCCCCTT-SCEEEE-TTEEEE
T ss_pred CCCcCchhHHccccCCcCccCCcccccCc-eEEEECccc----------cccccCchhhCCCccCC-CccEee-CCEEEC
Confidence 47899999999999999999999998532 245666654 49999999999999964 467754 899999
Q ss_pred ccccccccCCCCCC
Q 010559 279 LECLDSAIMDTHEC 292 (507)
Q Consensus 279 ~~C~~~~v~~t~~C 292 (507)
..||.+. +.++|
T Consensus 68 ~~cy~~~--f~~~~ 79 (82)
T 1x63_A 68 VTCHETK--FASGP 79 (82)
T ss_dssp HHHHHHH--TSCCC
T ss_pred HHHHHHH--hCCCC
Confidence 9999884 45554
No 48
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.28 E-value=1.4e-12 Score=115.09 Aligned_cols=73 Identities=15% Similarity=0.296 Sum_probs=65.3
Q ss_pred CcCccCCccccc-CceeeecCceeccCCcccCCCCCCC-CCcceeecCCccccccccccccCccccccCCccccC
Q 010559 154 RICAGCNTEIGH-GRYLSCMEAFWHPECFRCHSCNLPI-TDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTN 226 (507)
Q Consensus 154 ~~C~~C~k~I~~-g~~i~alg~~wHp~CF~Cs~C~~~L-~~~~f~~~~gk~yCk~CY~~~f~pkC~~C~~~I~~~ 226 (507)
++|.+|++.|.. +.++.++++.||+.||+|..|+++| .+..|+..++++||+.||.++|+++|..|...+...
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~ 83 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSGG 83 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSCCS
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCccC
Confidence 389999999976 4678999999999999999999999 455788899999999999999999999998877654
No 49
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.25 E-value=2.3e-12 Score=101.14 Aligned_cols=59 Identities=24% Similarity=0.562 Sum_probs=54.2
Q ss_pred CCcCccCCccccc-CceeeecCceec--cCCcccCCCCCCCCCcceeecCCcccc-ccccccc
Q 010559 153 YRICAGCNTEIGH-GRYLSCMEAFWH--PECFRCHSCNLPITDVEFSMSGNRPYH-KHCYKEQ 211 (507)
Q Consensus 153 ~~~C~~C~k~I~~-g~~i~alg~~wH--p~CF~Cs~C~~~L~~~~f~~~~gk~yC-k~CY~~~ 211 (507)
.++|.+|+++|.. ++.|.++++.|| +.||+|..|+++|.+..|+.++|+||| +.||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 4689999999977 489999999999 999999999999999999999999999 8998754
No 50
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.24 E-value=6.2e-12 Score=102.65 Aligned_cols=72 Identities=19% Similarity=0.370 Sum_probs=60.2
Q ss_pred CCccCCCCC-CCCCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCC-ccccccccccccC
Q 010559 141 GNIFQPFPF-FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGN-RPYHKHCYKEQHH 213 (507)
Q Consensus 141 gsv~~p~~~-~~g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~g-k~yCk~CY~~~f~ 213 (507)
.++||..++ ....++|.+|+++|. +++|.++++.||+.||+|..|+++|....|+..++ .+||+.||.+.+.
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred CCCcchHHHHhHhCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 467888888 667789999999996 88999999999999999999999998666555445 5799999976543
No 51
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.17 E-value=1.9e-11 Score=99.74 Aligned_cols=74 Identities=15% Similarity=0.345 Sum_probs=60.3
Q ss_pred CCccccccccccccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceec
Q 010559 199 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 278 (507)
Q Consensus 199 ~gk~yCk~CY~~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C 278 (507)
++.+||+.||.++|+++|..|+++|.+. .|.+.+..| |..||+|..|++.|..+. ++.++++.+||
T Consensus 1 ~~~~yC~~dy~~~~~~~C~~C~~~I~~~---~v~a~~~~w----------H~~CF~C~~C~~~L~~~~-~~~~~~~~~~C 66 (81)
T 1v6g_A 1 GSSGSSGLDYQRLYGTRCFSCDQFIEGE---VVSALGKTY----------HPDCFVCAVCRLPFPPGD-RVTFNGKECMC 66 (81)
T ss_dssp CCCCCCCSCGGGSCCCBCTTTCCBCCSC---CEEETTEEE----------CTTTSSCSSSCCCCCSSS-CEEEETTEEEE
T ss_pred CCCCcchHHHHhHhCCcCccccCEeccc---eEEECCcee----------CccCCccccCCCCCCCCC-EEEeCCCCEEC
Confidence 3579999999999999999999999963 577777654 999999999999997555 44554555799
Q ss_pred cccccccc
Q 010559 279 LECLDSAI 286 (507)
Q Consensus 279 ~~C~~~~v 286 (507)
..||.+.+
T Consensus 67 ~~C~~~~~ 74 (81)
T 1v6g_A 67 QKCSLPVS 74 (81)
T ss_dssp HHHHSCCS
T ss_pred hhhhcccC
Confidence 99998753
No 52
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.03 E-value=3.6e-11 Score=113.52 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=62.8
Q ss_pred CCCccCCCCC-CCCCC--cCccCCcccccC-ceeeecCceeccCCcccCCCCCCCC-CcceeecCCccccccccccccCc
Q 010559 140 SGNIFQPFPF-FSGYR--ICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPIT-DVEFSMSGNRPYHKHCYKEQHHP 214 (507)
Q Consensus 140 ~gsv~~p~~~-~~g~~--~C~~C~k~I~~g-~~i~alg~~wHp~CF~Cs~C~~~L~-~~~f~~~~gk~yCk~CY~~~f~p 214 (507)
.|.+||..++ ....+ +|.+|+++|... .++.++++.||+.||+|..|+++|. +..|+..++++||+.||.+++.+
T Consensus 53 ~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~ 132 (188)
T 1rut_X 53 SGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALIN 132 (188)
T ss_dssp TTEEECHHHHHHHHSCCEECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC-
T ss_pred CCccccccccccccccCCccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcc
Confidence 4677887766 33334 799999999764 5789999999999999999999996 55788899999999999999999
Q ss_pred cccccCC
Q 010559 215 KCDVCQN 221 (507)
Q Consensus 215 kC~~C~~ 221 (507)
+|..++.
T Consensus 133 ~~~~~g~ 139 (188)
T 1rut_X 133 GHLNSGG 139 (188)
T ss_dssp -------
T ss_pred cccccCC
Confidence 9988765
No 53
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=98.99 E-value=3.3e-11 Score=106.79 Aligned_cols=75 Identities=16% Similarity=0.293 Sum_probs=62.4
Q ss_pred CCCccCCCCC-CCCCC--cCccCCcccccC-ceeeecCceeccCCcccCCCCCCCC-CcceeecCCccccccccccccCc
Q 010559 140 SGNIFQPFPF-FSGYR--ICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPIT-DVEFSMSGNRPYHKHCYKEQHHP 214 (507)
Q Consensus 140 ~gsv~~p~~~-~~g~~--~C~~C~k~I~~g-~~i~alg~~wHp~CF~Cs~C~~~L~-~~~f~~~~gk~yCk~CY~~~f~p 214 (507)
.|.+|+..++ ....+ +|.+|+++|... .++.++++.||+.||+|..|+++|. +..|+..++++||+.||.++|++
T Consensus 50 ~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 50 LGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKI 129 (131)
T ss_dssp TTEEECHHHHHHHHCCCEECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHH
T ss_pred CCEEeecCchhhhCCCccChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhc
Confidence 4667777666 33344 899999999754 5789999999999999999999994 66788899999999999987764
No 54
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=98.94 E-value=1.4e-10 Score=102.09 Aligned_cols=73 Identities=18% Similarity=0.360 Sum_probs=62.8
Q ss_pred CCCccCCCCC-CCCCCcCccCCccccc-CceeeecCceec--cCCcccCCCCCCCCCcceeecCCcccccccccccc
Q 010559 140 SGNIFQPFPF-FSGYRICAGCNTEIGH-GRYLSCMEAFWH--PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH 212 (507)
Q Consensus 140 ~gsv~~p~~~-~~g~~~C~~C~k~I~~-g~~i~alg~~wH--p~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f 212 (507)
.|.+|+...+ ....++|.+|+++|.. +.+|.++++.|| +.||+|..|+++|.+..|+..+|++||+.+|.++|
T Consensus 49 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 49 NDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp TTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred CCEEechHHhCcCcCccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 4667776666 5567899999999976 478999999999 99999999999999888999999999997777655
No 55
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.92 E-value=8.5e-10 Score=88.87 Aligned_cols=71 Identities=18% Similarity=0.357 Sum_probs=57.9
Q ss_pred cccCccccccCCcccc--CcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccccC
Q 010559 210 EQHHPKCDVCQNFIPT--NSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM 287 (507)
Q Consensus 210 ~~f~pkC~~C~~~I~~--~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~ 287 (507)
++|+++|..|+++|.+ .. ..+.+.+.. ||..||+|..|++.|. +..|+.. +|++||..||.+ .
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~-~~~~a~~~~----------wH~~CF~C~~C~~~L~-~~~f~~~-~g~~yC~~cy~~--~ 66 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGA-KFICFQDSQ----------WHSECFNCGKCSVSLV-GKGFLTQ-NKEIFCQKCGSG--M 66 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTC-CEEEETTEE----------EEGGGCBCTTTCCBCS-SSCEEEE-TTEEEETTTTCC--C
T ss_pred CccCCCCccCCCcccCCCCc-eeEEECCcc----------cCcccCChhhCCCcCC-CCceEeE-CCEEECHHHhhh--h
Confidence 4689999999999996 21 356666664 4999999999999996 6778764 899999999998 5
Q ss_pred CCCCCccc
Q 010559 288 DTHECQPL 295 (507)
Q Consensus 288 ~t~~C~~c 295 (507)
+.++|+++
T Consensus 67 f~~~C~~~ 74 (76)
T 1x68_A 67 DTDISGPS 74 (76)
T ss_dssp CCCSSSSS
T ss_pred hCCcCCCC
Confidence 68899876
No 56
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.83 E-value=2.6e-09 Score=85.65 Aligned_cols=63 Identities=16% Similarity=0.332 Sum_probs=51.6
Q ss_pred cccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceeccccccccc
Q 010559 210 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 286 (507)
Q Consensus 210 ~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v 286 (507)
.+|+++|..|+++|.+. .|.+.+.. ||+.||+|..|++.|..+..|+.. ++++||..||..+.
T Consensus 2 s~~~~~C~~C~~~I~~~---~v~a~~~~----------wH~~CF~C~~C~~~L~~~~~f~~~-~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 2 SSGSSGCDSCEKYITGR---VLEAGEKH----------YHPSCALCVRCGQMFAEGEEMYLQ-GSSIWHPACRQAAR 64 (73)
T ss_dssp CCSCCSCSSSCCCCSSC---CBCCSSCC----------BCTTTSCCSSSCCCCCSSCCCEEE-TTEEECTTHHHHTS
T ss_pred CcCcCCcccCCCEecCe---eEEeCCCC----------CCCCcCEeCCCCCCCCCCCeeEee-CCEEEChHHChHhh
Confidence 36899999999999974 45566654 499999999999999767777755 89999999998743
No 57
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.83 E-value=3.2e-09 Score=88.33 Aligned_cols=76 Identities=13% Similarity=0.324 Sum_probs=59.9
Q ss_pred ccccccccccccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceeccc
Q 010559 201 RPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLE 280 (507)
Q Consensus 201 k~yCk~CY~~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~ 280 (507)
.+.+...+...+.++|..|+++|.+. .+.+.++.| |..||+|..|++.|. +..|+. .+|++||..
T Consensus 13 ~~~~~~~~~~~~~~~C~~C~~~I~~~---~v~a~~~~~----------H~~CF~C~~C~~~L~-~~~f~~-~~g~~yC~~ 77 (90)
T 2dar_A 13 VQRAEHIPAGKRTPMCAHCNQVIRGP---FLVALGKSW----------HPEEFNCAHCKNTMA-YIGFVE-EKGALYCEL 77 (90)
T ss_dssp CBCCEEECTTTCCCBBSSSCCBCCSC---EEEETTEEE----------CTTTCBCSSSCCBCS-SSCBEE-SSSCEECHH
T ss_pred hhhcccCCCCCCCCCCccCCCEecce---EEEECCccc----------cccCCccCCCCCCCC-CCEeEe-ECCEEECHH
Confidence 34445556778999999999999753 566666653 999999999999996 556764 589999999
Q ss_pred ccccccCCCCCCc
Q 010559 281 CLDSAIMDTHECQ 293 (507)
Q Consensus 281 C~~~~v~~t~~C~ 293 (507)
||.+ .+.++|.
T Consensus 78 cy~~--~f~~~c~ 88 (90)
T 2dar_A 78 CYEK--FFASGPS 88 (90)
T ss_dssp HHHH--HTSCCCC
T ss_pred HHHH--HcCCCCC
Confidence 9998 4577775
No 58
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.80 E-value=3.6e-09 Score=83.89 Aligned_cols=69 Identities=14% Similarity=0.418 Sum_probs=54.6
Q ss_pred cccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccccCCC
Q 010559 210 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT 289 (507)
Q Consensus 210 ~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t 289 (507)
++|+++|..|+++|.... .++.+.+.. ||..||+|..|++.|. +..|+.. +|++||..||.+ .+.
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~--~f~ 66 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPGT-RKMEYKGSS----------WHETCFICHRCQQPIG-TKSFIPK-DNQNFCVPCYEK--QHA 66 (72)
T ss_dssp CSCCCCBSSSCCCCCSSS-CEEEETTEE----------EETTTTCCSSSCCCCC-SSSEEEE-TTEEEEHHHHHH--HTS
T ss_pred CccCCCCccCCCcccCCc-eEEEECcCe----------ecccCCcccccCCccC-CCccCcc-CCeEECHHHHhH--HhC
Confidence 468899999999999642 256666654 4999999999999996 4477754 899999999988 456
Q ss_pred CCCc
Q 010559 290 HECQ 293 (507)
Q Consensus 290 ~~C~ 293 (507)
+.|+
T Consensus 67 ~~C~ 70 (72)
T 1x4k_A 67 SGPS 70 (72)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7775
No 59
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.79 E-value=3.7e-09 Score=83.48 Aligned_cols=67 Identities=19% Similarity=0.427 Sum_probs=53.8
Q ss_pred cccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccccCCC
Q 010559 210 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT 289 (507)
Q Consensus 210 ~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t 289 (507)
.++.++|..|+++|.+. .+.+.+.. ||..||+|..|++.|. +..|+.. ++++||..||.+ .+.
T Consensus 2 ~~~~~~C~~C~~~I~~~---~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~--~f~ 64 (70)
T 2d8z_A 2 SSGSSGCVQCKKPITTG---GVTYREQP----------WHKECFVCTACRKQLS-GQRFTAR-DDFAYCLNCFCD--LYA 64 (70)
T ss_dssp CCCCCBCSSSCCBCCSS---EEESSSSE----------EETTTSBCSSSCCBCT-TSCCEES-SSSEECHHHHHH--HTC
T ss_pred CCCCCCCcccCCeeccc---eEEECccc----------cCCCCCccCCCCCcCC-cCceEee-CCeEECHHHHHH--Hhc
Confidence 35789999999999864 36666554 4999999999999995 6677754 899999999988 457
Q ss_pred CCCc
Q 010559 290 HECQ 293 (507)
Q Consensus 290 ~~C~ 293 (507)
++|.
T Consensus 65 ~~c~ 68 (70)
T 2d8z_A 65 SGPS 68 (70)
T ss_dssp CCCT
T ss_pred cccC
Confidence 7775
No 60
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=98.78 E-value=3.4e-09 Score=89.59 Aligned_cols=74 Identities=22% Similarity=0.470 Sum_probs=60.5
Q ss_pred ccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccccCCCC
Q 010559 211 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 290 (507)
Q Consensus 211 ~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~ 290 (507)
.+.++|..|+++|.... .++.+.+.. ||..||+|..|++.|. +..|+.. +|++||..||.+ .+.+
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~cy~~--~~~~ 67 (101)
T 2cup_A 3 SGSSGCVECRKPIGADS-KEVHYKNRF----------WHDTCFRCAKCLHPLA-NETFVAK-DNKILCNKCTTR--EDSP 67 (101)
T ss_dssp SCCCBCSSSCCBCCSSS-CEEEETTEE----------EETTTCCCSSSCCCTT-SSCCEEE-TTEEECHHHHTT--CCCC
T ss_pred CCCCcCcccCCcccCCc-eEEEECccC----------hhhcCCcccccCCCCC-cCeeECc-CCEEEChhHhhh--hcCC
Confidence 56889999999997421 356666664 3999999999999995 6677754 899999999998 5689
Q ss_pred CCccccHHH
Q 010559 291 ECQPLYLEI 299 (507)
Q Consensus 291 ~C~~c~~~I 299 (507)
+|..|.++|
T Consensus 68 ~C~~C~~~I 76 (101)
T 2cup_A 68 KCKGCFKAI 76 (101)
T ss_dssp BCSSSCCBC
T ss_pred ccccCCCcc
Confidence 999999877
No 61
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.78 E-value=4.3e-09 Score=83.47 Aligned_cols=69 Identities=16% Similarity=0.374 Sum_probs=54.1
Q ss_pred cccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccccCCC
Q 010559 210 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT 289 (507)
Q Consensus 210 ~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t 289 (507)
++|+++|..|+++|.... .++.+.+.. ||..||+|..|++.|. +..|+.. +|++||..||.+ .+.
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~--~f~ 66 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGS-RKLEYGGQT----------WHEHCFLCSGCEQPLG-SRSFVPD-KGAHYCVPCYEN--KFA 66 (72)
T ss_dssp CCCCCBCSSSCCBCCSSS-CEECSTTCC----------EETTTCBCTTTCCBTT-TSCEEEE-TTEEEEHHHHHH--HTS
T ss_pred CccCCCCccCCCccccCc-cEEEECccc----------cCcccCeECCCCCcCC-CCccCCc-CCeEECHHHHHH--Hcc
Confidence 368899999999998532 245555554 4999999999999996 4567754 899999999988 457
Q ss_pred CCCc
Q 010559 290 HECQ 293 (507)
Q Consensus 290 ~~C~ 293 (507)
++|+
T Consensus 67 ~~C~ 70 (72)
T 1wyh_A 67 SGPS 70 (72)
T ss_dssp CCCC
T ss_pred CcCC
Confidence 7775
No 62
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=98.78 E-value=4.9e-09 Score=98.23 Aligned_cols=84 Identities=13% Similarity=0.201 Sum_probs=66.4
Q ss_pred CCccccccccc---cccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCc
Q 010559 199 GNRPYHKHCYK---EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGR 275 (507)
Q Consensus 199 ~gk~yCk~CY~---~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr 275 (507)
++..||..++. ....++|..|+++|.+.. ++.+.+.. ||..||+|..|++.|. +..| . .+|+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~--~~~a~~~~----------wH~~CF~C~~C~~~L~-~~~f-~-~~g~ 107 (182)
T 2jtn_A 43 DDEGGSGGHMGSGGTPEIPMCAGCDQHILDRF--ILKALDRH----------WHSKCLKCSDCHVPLA-ERCF-S-RGES 107 (182)
T ss_dssp SSSCSSSSSCCCCCCCSCCBCBTSSSBCCCSE--EEEETTEE----------ECSSTTSCTTTCCCCS-SCCE-E-ETTE
T ss_pred ccccccccccccCCCCCCCcCccCCCCccCce--eEEecCCe----------EccccCccCCCCCccC-CCce-e-ECCE
Confidence 45678887775 456789999999999742 45566654 3999999999999996 3445 3 4899
Q ss_pred eecccccccccCCCCCCccccHHH
Q 010559 276 KLCLECLDSAIMDTHECQPLYLEI 299 (507)
Q Consensus 276 ~~C~~C~~~~v~~t~~C~~c~~~I 299 (507)
+||..||.+ .+.++|..|.++|
T Consensus 108 ~yC~~~y~~--~f~~kC~~C~~~I 129 (182)
T 2jtn_A 108 VYCKDDFFK--RFGTKCAACQLGI 129 (182)
T ss_dssp EECHHHHHH--TTSCCCTTTCCCC
T ss_pred eeecCcccc--ccccccccCCCcc
Confidence 999999998 5689999999777
No 63
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.77 E-value=4.1e-09 Score=83.04 Aligned_cols=66 Identities=15% Similarity=0.482 Sum_probs=53.7
Q ss_pred ccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccccCCCC
Q 010559 211 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 290 (507)
Q Consensus 211 ~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~ 290 (507)
.+.++|..|+++|.++ .+.+.+..| |..||+|..|++.|. +..|+.. ++++||..||.+. +.+
T Consensus 3 ~~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~~--f~~ 65 (69)
T 2cur_A 3 SGSSGCVKCNKAITSG---GITYQDQPW----------HADCFVCVTCSKKLA-GQRFTAV-EDQYYCVDCYKNF--VSG 65 (69)
T ss_dssp CCCCCCSSSCCCCCTT---CEEETTEEE----------CTTTTBCTTTCCBCT-TSCEEEC-SSCEEEHHHHHHH--HTC
T ss_pred CCcCCCcccCCEeCcc---eEEECcccc----------ccCcCEECCCCCCCC-CCccEeE-CCEEECHHHhHHH--hcC
Confidence 5788999999999864 466766653 999999999999996 6677754 8999999999884 467
Q ss_pred CCc
Q 010559 291 ECQ 293 (507)
Q Consensus 291 ~C~ 293 (507)
+|.
T Consensus 66 ~C~ 68 (69)
T 2cur_A 66 PSS 68 (69)
T ss_dssp SCC
T ss_pred CCC
Confidence 775
No 64
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=98.76 E-value=2.8e-09 Score=93.92 Aligned_cols=74 Identities=12% Similarity=0.216 Sum_probs=57.6
Q ss_pred cccccCc--cccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccc
Q 010559 208 YKEQHHP--KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 285 (507)
Q Consensus 208 Y~~~f~p--kC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~ 285 (507)
|.++|++ +|..|+++|.... .++.+.++. ||..||+|..|++.|..+..|+.. ++++||..||.+.
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e-~~~~a~~~~----------~H~~CF~C~~C~~~L~~g~~f~~~-~g~~yC~~cy~~~ 68 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYE-MTMRVKDKV----------YHLECFKCAACQKHFSVGDRYLLI-NSDIVCEQDIYEW 68 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTC-CCCCCSSCC----------CCTTTCBCTTTCCBCCTTCEEEEC-SSSEEEGGGHHHH
T ss_pred ChhhhCCCCcccCCCCeecCCc-eEEEECCcc----------cccccCccccCCCCCCCCCcEEee-CCEEEcHHHhHHH
Confidence 6678998 9999999998632 245555554 499999999999999767788865 7999999999874
Q ss_pred cCCCCCCccc
Q 010559 286 IMDTHECQPL 295 (507)
Q Consensus 286 v~~t~~C~~c 295 (507)
+ .++|..+
T Consensus 69 ~--~~~~~~~ 76 (123)
T 2l3k_A 69 T--KINGGSG 76 (123)
T ss_dssp H--HHHTCCC
T ss_pred h--ccccCCC
Confidence 3 4555443
No 65
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.73 E-value=1.2e-09 Score=96.01 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=60.3
Q ss_pred ccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCC-CCceEEccCCceecccccccccCCC
Q 010559 211 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPR-DTKYLSLDDGRKLCLECLDSAIMDT 289 (507)
Q Consensus 211 ~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~-g~~y~~l~dGr~~C~~C~~~~v~~t 289 (507)
++.++|..|+++|.+.. ++.+.+.. ||..||+|..|++.|.. +..|+.. +|++||..||.+.+ .
T Consensus 3 ~~~~~C~~C~~~I~~~~--~~~a~~~~----------wH~~CF~C~~C~~~L~~~~~~~~~~-~g~~yC~~cy~~~f--~ 67 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRF--LLYAMDSY----------WHSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYIRLF--G 67 (122)
T ss_dssp SCCCCBSSSSSCCCSSC--CEEETTEE----------ECHHHHCCSSSCCCTTTSEECCEEE-TTEEECHHHHHHHH--C
T ss_pred CCCCCCcccCCEeCCcE--EEEECCce----------eHhhCCCcCCCCCcccccCCeEEEE-CCeeecHHHHHHHc--C
Confidence 46789999999999753 46666665 38999999999999962 4567754 89999999999854 5
Q ss_pred C--CCccccHHH
Q 010559 290 H--ECQPLYLEI 299 (507)
Q Consensus 290 ~--~C~~c~~~I 299 (507)
+ .|..|.++|
T Consensus 68 ~~~~C~~C~~~I 79 (122)
T 1m3v_A 68 NSGAGGSGGHMG 79 (122)
T ss_dssp CCCSSSCSSCCS
T ss_pred CCCccccCCCCc
Confidence 6 999999888
No 66
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.72 E-value=1.2e-08 Score=81.01 Aligned_cols=68 Identities=16% Similarity=0.324 Sum_probs=52.0
Q ss_pred ccCccccccCCccccC-cccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccccCCC
Q 010559 211 QHHPKCDVCQNFIPTN-SAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT 289 (507)
Q Consensus 211 ~f~pkC~~C~~~I~~~-~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t 289 (507)
.+.++|..|+++|.+. ...++.+.++. ||..||+|..|++.|. +..|+. .+|++||..||.+. +.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~----------wH~~CF~C~~C~~~L~-~~~f~~-~~g~~yC~~c~~~~--~~ 68 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQ----------WHNDCFNCKKCSLSLV-GRGFLT-ERDDILCPDCGKDI--SG 68 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCE----------ECTTTCBCSSSCCBCT-TSCCEE-CSSSEECHHHHHTC--CC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcc----------cCcccCEeccCCCcCC-CCccEe-ECCEEEChhHcCcc--cC
Confidence 4688999999999961 11356666654 4999999999999995 666764 58999999999884 45
Q ss_pred CCC
Q 010559 290 HEC 292 (507)
Q Consensus 290 ~~C 292 (507)
|++
T Consensus 69 p~~ 71 (72)
T 1x4l_A 69 PSS 71 (72)
T ss_dssp SSC
T ss_pred CCC
Confidence 544
No 67
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=98.72 E-value=1.2e-09 Score=101.38 Aligned_cols=77 Identities=21% Similarity=0.354 Sum_probs=62.8
Q ss_pred CCCccCCCCC-CCCCCcCccCCcccccCc-eeeecCceeccCCcccCCCCCCCC-Cccee-ecCCccccccccccccCcc
Q 010559 140 SGNIFQPFPF-FSGYRICAGCNTEIGHGR-YLSCMEAFWHPECFRCHSCNLPIT-DVEFS-MSGNRPYHKHCYKEQHHPK 215 (507)
Q Consensus 140 ~gsv~~p~~~-~~g~~~C~~C~k~I~~g~-~i~alg~~wHp~CF~Cs~C~~~L~-~~~f~-~~~gk~yCk~CY~~~f~pk 215 (507)
.|.+||..++ ....++|.+|+++|..+. ++.++++.||+.||+|..|+++|. +..|+ ..+|++||+.||.+.+...
T Consensus 51 ~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~ 130 (169)
T 2rgt_A 51 GESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGG 130 (169)
T ss_dssp SSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC
T ss_pred CCeeeecccccccccccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhcc
Confidence 5777887766 556789999999997654 568999999999999999999997 34554 5689999999999887654
Q ss_pred c
Q 010559 216 C 216 (507)
Q Consensus 216 C 216 (507)
+
T Consensus 131 ~ 131 (169)
T 2rgt_A 131 S 131 (169)
T ss_dssp -
T ss_pred C
Confidence 4
No 68
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=98.67 E-value=1e-08 Score=80.80 Aligned_cols=65 Identities=14% Similarity=0.392 Sum_probs=51.3
Q ss_pred cccccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccc
Q 010559 208 YKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 285 (507)
Q Consensus 208 Y~~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~ 285 (507)
|...+.++|..|+++|.+.. .++.+.+.. ||..||+|..|++.|..+ .|+.. +|++||..||.+.
T Consensus 6 y~~~~~~~C~~C~~~i~~~e-~~~~~~~~~----------~H~~CF~C~~C~~~L~~~-~~~~~-~g~~yC~~~y~~l 70 (72)
T 3f6q_B 6 FQGSASATCERCKGGFAPAE-KIVNSNGEL----------YHEQCFVCAQCFQQFPEG-LFYEF-EGRKYCEHDFQML 70 (72)
T ss_dssp CCCCTTCBCTTTCCBCCTTC-EEEEETTEE----------EETTTSSCTTTCCCCGGG-CCEEE-TTEEECHHHHHHH
T ss_pred ccCcCCccchhcCccccCCc-eEEEeCcCe----------eCcCCCcccCCCCCCCCC-CeEeE-CCeEeCHHHHHHh
Confidence 45578899999999999653 234566654 499999999999999755 67755 7999999999863
No 69
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.66 E-value=2e-08 Score=80.70 Aligned_cols=68 Identities=13% Similarity=0.244 Sum_probs=54.0
Q ss_pred cccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecc-cccccccCC
Q 010559 210 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCL-ECLDSAIMD 288 (507)
Q Consensus 210 ~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~-~C~~~~v~~ 288 (507)
..+.++|..|+++|.... .+.+.+.. ||..||+|..|++.|. +..|+.. ++++||. .||.+ .+
T Consensus 6 ~~~~~~C~~C~~~I~~~~--~v~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~cy~~--~f 69 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYFAE--KVSSLGKD----------WHKFCLKCERCSKTLT-PGGHAEH-DGKPFCHKPCYAT--LF 69 (76)
T ss_dssp CCCCCBCTTTCCBCCTTT--EEEETTEE----------EETTTCBCSSSCCBCC-TTSCEEE-TTEEECTTTHHHH--HS
T ss_pred CCCCCCCcCCCCEeECCe--EEEECCeE----------eeCCCCCCCCCCCccC-CCceEeE-CCEEecchHHHHH--hc
Confidence 457899999999998543 46666654 4999999999999996 5667755 8999999 79988 45
Q ss_pred CCCCc
Q 010559 289 THECQ 293 (507)
Q Consensus 289 t~~C~ 293 (507)
.++|.
T Consensus 70 ~~kc~ 74 (76)
T 2cu8_A 70 GSGPS 74 (76)
T ss_dssp CSSCS
T ss_pred ccccC
Confidence 67775
No 70
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=98.66 E-value=1.5e-08 Score=81.37 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=54.6
Q ss_pred ccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecc-cccccccCCCCCC
Q 010559 214 PKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCL-ECLDSAIMDTHEC 292 (507)
Q Consensus 214 pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~-~C~~~~v~~t~~C 292 (507)
|+|..|+++|.... .+.+.+.. ||..||+|..|++.|.. ..|+.. +|++||. .||.+ .+.++|
T Consensus 1 p~C~~C~~~I~~~~--~v~a~~~~----------~H~~CF~C~~C~~~L~~-~~~~~~-~g~~yC~~~cy~~--~f~~~C 64 (76)
T 1iml_A 1 PKCPKCDKEVYFAE--RVTSLGKD----------WHRPCLKCEKCGKTLTS-GGHAEH-EGKPYCNHPCYSA--MFGPKG 64 (76)
T ss_dssp CBCTTTSSBCCGGG--EEEETTEE----------EETTTCBCTTTCCBCCT-TTEEEE-TTEEEETTTHHHH--HSSCCC
T ss_pred CcCCCCCCEEECce--EEEECCcc----------ccCCCCCccccCccCCC-CceECc-CCeEeeCHHHHHH--HhCccC
Confidence 68999999998542 45666554 49999999999999964 467754 8999999 69998 468999
Q ss_pred ccccH
Q 010559 293 QPLYL 297 (507)
Q Consensus 293 ~~c~~ 297 (507)
..|..
T Consensus 65 ~~C~~ 69 (76)
T 1iml_A 65 FGRGG 69 (76)
T ss_dssp SSCCC
T ss_pred CCcCC
Confidence 99974
No 71
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.65 E-value=1.5e-08 Score=81.41 Aligned_cols=68 Identities=13% Similarity=0.304 Sum_probs=51.8
Q ss_pred ccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccccCCCC
Q 010559 211 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 290 (507)
Q Consensus 211 ~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~ 290 (507)
.+.++|..|+++|.... .++.+.+.. ||..||+|..|++.|..+ .|+.. +|++||..||.+ .+.+
T Consensus 9 ~~~~~C~~C~~~I~~~~-~~~~a~~~~----------~H~~CF~C~~C~~~L~~~-~~~~~-~g~~yC~~~y~~--~f~~ 73 (77)
T 1g47_A 9 LASATCERCKGGFAPAE-KIVNSNGEL----------YHEQCFVCAQCFQQFPEG-LFYEF-EGRKYCEHDFQM--LFAP 73 (77)
T ss_dssp CCCCBCSSSCCBCCSTT-TCEEETTEE----------ECTTTCCCTTTCCCCGGG-CSEEE-TTEEECHHHHHH--HCCC
T ss_pred CCCCCchhcCCccCCCc-eEEEeCccE----------eccccCeECCCCCCCCCC-CeEeE-CCeEeCHHHHHH--Hhhc
Confidence 46789999999997532 345666665 399999999999999644 57754 899999999988 4567
Q ss_pred CCc
Q 010559 291 ECQ 293 (507)
Q Consensus 291 ~C~ 293 (507)
.|.
T Consensus 74 ~C~ 76 (77)
T 1g47_A 74 CWI 76 (77)
T ss_dssp C--
T ss_pred ccC
Confidence 664
No 72
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.65 E-value=2e-08 Score=79.60 Aligned_cols=63 Identities=13% Similarity=0.302 Sum_probs=50.6
Q ss_pred ccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceeccccccccc
Q 010559 211 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 286 (507)
Q Consensus 211 ~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v 286 (507)
.+.++|..|+++|.+.. .++.+.+.. ||..||+|..|++.|. +..|+.. ++++||..||.+.+
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDG-AGVVALDRV----------FHVGCFVCSTCRAQLR-GQHFYAV-ERRAYCEGCYVATL 65 (72)
T ss_dssp SCCCCCSSSCSCCCSSS-CCEECSSSE----------ECTTTCBCSSSCCBCT-TSCEEES-SSCEEEHHHHHHHH
T ss_pred CCCCCCccCCCccCCCc-eEEEECCCe----------EcccCCcccccCCcCC-cCcCEee-CCeEECHHHHHHHH
Confidence 47899999999998632 246666654 4999999999999994 7778765 78999999998754
No 73
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=98.64 E-value=1.3e-08 Score=79.48 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=49.4
Q ss_pred cccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccc
Q 010559 210 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 285 (507)
Q Consensus 210 ~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~ 285 (507)
+++.++|..|+++|.+. .+.+.+.. ||..||+|..|++.|. +..|+.. +|++||..||.+.
T Consensus 2 ~~~~~~C~~C~~~I~~~---~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 2 SMGVPICGACRRPIEGR---VVNAMGKQ----------WHVEHFVCAKCEKPFL-GHRHYER-KGLAYCETHYNQL 62 (66)
T ss_dssp CCCCCEETTTTEECCSC---EECCTTSB----------EETTTCBCTTTCCBCS-SSCCEEE-TTEEECHHHHHHH
T ss_pred CcCCCCCcccCCEecce---EEEECccc----------cccCcCEECCCCCCCC-CCceEeE-CCcEECHHHHHHH
Confidence 35789999999999953 46666554 4999999999999995 5677754 8999999999874
No 74
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=98.63 E-value=1.3e-08 Score=82.84 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=48.7
Q ss_pred cCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccccCCCCC
Q 010559 212 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 291 (507)
Q Consensus 212 f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~ 291 (507)
..++|..|+++|.... .+.+.+.. ||..||+|..|++.|. +..|+.. ++++||..||.+ .+.++
T Consensus 6 ~~~~C~~C~~~I~~~~--~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~--~f~~~ 69 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAE--EVQCDGRS----------FHRCCFLCMVCRKNLD-STTVAIH-DAEVYCKSCYGK--KYGPK 69 (81)
T ss_dssp --CBCSSSCCBCSSTT--EEEETTEE----------EESSSEECSSSCCEEC-SSCCEEE-TTEEECSHHHHH--HCC--
T ss_pred CCCcCcCcCccccCce--eEEeCCcc----------cccccCccCCCCCCCC-CCCeEee-CCEEECHHHHHH--HhCCc
Confidence 5689999999997543 46666654 4999999999999996 4467755 899999999998 46899
Q ss_pred CccccH
Q 010559 292 CQPLYL 297 (507)
Q Consensus 292 C~~c~~ 297 (507)
|..|..
T Consensus 70 c~gcg~ 75 (81)
T 1a7i_A 70 GYGYGQ 75 (81)
T ss_dssp ------
T ss_pred ccccCC
Confidence 998864
No 75
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=98.63 E-value=1.8e-08 Score=78.74 Aligned_cols=60 Identities=22% Similarity=0.561 Sum_probs=48.1
Q ss_pred cCccccccCCccccCcccceeeccccccccccCCCccC--CCCCccCCCCCcCCCCCceEEccCCceec-cccccc
Q 010559 212 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHER--DGTPRCCSCERMEPRDTKYLSLDDGRKLC-LECLDS 284 (507)
Q Consensus 212 f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H--~~CF~C~~C~~~l~~g~~y~~l~dGr~~C-~~C~~~ 284 (507)
|+++|..|+++|.... ..|.+.+..| | ..||+|..|++.|. +..|+.. +|++|| ..||.+
T Consensus 1 fa~~C~~C~~~I~~~~-~~v~a~~~~w----------H~~~~CF~C~~C~~~L~-~~~f~~~-~g~~yC~~~C~~k 63 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEV-QRVTYNNFSW----------HASTECFLCSCCSKCLI-GQKFMPV-EGMVFCSVECKKR 63 (65)
T ss_dssp -CEECTTTSSEECTTS-CEEEETTEEE----------ETTTTTSBCTTTCCBCT-TSCCEEE-TTEEESSHHHHHT
T ss_pred CcCCCcCCCCeeccCc-eEEEECCCcc----------CCCCCCEECCCCCCcCC-CCceEEE-CCEEecCHHHhhh
Confidence 5789999999999531 3567777654 8 99999999999995 6677755 799999 899876
No 76
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.60 E-value=3.5e-08 Score=80.23 Aligned_cols=64 Identities=17% Similarity=0.351 Sum_probs=49.7
Q ss_pred ccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccccCCCC
Q 010559 211 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 290 (507)
Q Consensus 211 ~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~ 290 (507)
.+.++|..|+++|.+. .|.+.+.. ||..||+|..|++.|.. . ++ ..+|++||..||.+. +++
T Consensus 13 ~~~~~C~~C~~~I~~~---~v~a~~~~----------~H~~CF~C~~C~~~L~~-~-~f-~~~g~~yC~~cy~~~--f~p 74 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQ---PLIFKNDP----------YHPDHFNCANCGKELTA-D-AR-ELKGELYCLPCHDKM--GVS 74 (79)
T ss_dssp CCCCBCTTTCCBCCSC---CCCCSSSC----------CCTTTSBCSSSCCBCCT-T-CE-EETTEEECHHHHHTT--SCC
T ss_pred cCCCCCccCCCEecce---EEEECcce----------eCCCCCEeCCCCCccCC-C-CE-eECCEEeCHHHHHHh--CCC
Confidence 4678999999999953 45666654 49999999999999963 3 45 448999999999984 455
Q ss_pred CC
Q 010559 291 EC 292 (507)
Q Consensus 291 ~C 292 (507)
.+
T Consensus 75 ~~ 76 (79)
T 2cor_A 75 GP 76 (79)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 77
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.57 E-value=4.6e-08 Score=79.83 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=51.1
Q ss_pred cCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccccCCCCC
Q 010559 212 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 291 (507)
Q Consensus 212 f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~ 291 (507)
..++|..|+++|.... .+.+.++. ||..||+|..|++.|. + .|+.. +|++||..||.+. +.+.
T Consensus 14 ~~~~C~~C~~~I~~~~--~v~a~~~~----------wH~~CF~C~~C~~~L~-~-~~~~~-~g~~yC~~~y~~~--fg~~ 76 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQ--SLLALDKQ----------WHVSCFKCQTCSVILT-G-EYISK-DGVPYCESDYHAQ--FGSG 76 (80)
T ss_dssp SCSCCTTTCCCCSSSC--CEEETTEE----------ECTTTCBCSSSCCBCS-S-CCEEE-TTEEECTTHHHHH--TTCC
T ss_pred CCCCCcCcCCeeCCCe--EEEECCcc----------cccccCCcCcCCCCcC-C-CeEEE-CCEEECHHHHHHH--cCCC
Confidence 3578999999998542 46666664 3999999999999995 4 57754 8999999999984 5677
Q ss_pred Cc
Q 010559 292 CQ 293 (507)
Q Consensus 292 C~ 293 (507)
|.
T Consensus 77 C~ 78 (80)
T 2dj7_A 77 PS 78 (80)
T ss_dssp ST
T ss_pred CC
Confidence 75
No 78
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.56 E-value=4.4e-08 Score=77.32 Aligned_cols=61 Identities=21% Similarity=0.501 Sum_probs=49.1
Q ss_pred ccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceeccccccccc
Q 010559 211 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 286 (507)
Q Consensus 211 ~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v 286 (507)
.+.++|..|+++|.+. .+.+.+..| |..||+|..|++.|..+ .|+. .+|++||..||.+.+
T Consensus 3 ~~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~~~-~f~~-~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 3 SGSSGCHQCGEFIIGR---VIKAMNNSW----------HPECFRCDLCQEVLADI-GFVK-NAGRHLCRPCHNREK 63 (70)
T ss_dssp CCSSBCSSSCCBCCSC---CEEETTEEE----------CTTTSBCSSSCCBCSSS-CCEE-ETTEEECHHHHHHHH
T ss_pred CCCCcCccCCCEecce---EEEECcccc----------cccCCEeCCCCCcCCCC-ccEe-ECCeEECHHHhhhhc
Confidence 3578999999999863 566776653 99999999999999644 5664 589999999998753
No 79
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.54 E-value=2.9e-08 Score=86.19 Aligned_cols=69 Identities=16% Similarity=0.117 Sum_probs=55.1
Q ss_pred CccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCC-CCceEEccCCceecccccccccCCCCC
Q 010559 213 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPR-DTKYLSLDDGRKLCLECLDSAIMDTHE 291 (507)
Q Consensus 213 ~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~-g~~y~~l~dGr~~C~~C~~~~v~~t~~ 291 (507)
.++|..|+++|.+.. ++.+.+.. ||..||+|..|++.|.. |..|+.. +|++||..||.+. +.++
T Consensus 3 ~~~C~~C~~~I~~~~--~~~a~~~~----------wH~~CF~C~~C~~~L~~~g~~~~~~-~g~~yC~~~y~~~--f~~~ 67 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRY--FLKAIDQY----------WHEDCLSCDLCGCRLGEVGRRLYYK-LGRKLCRRDYLRL--GGSG 67 (114)
T ss_dssp CBCBSSSCSCBCSSE--EEECSSSE----------ECTTTCCCSSSCSCCCCSSSCCCCB-TTBCCCHHHHHHH--HTSC
T ss_pred CCCCcCCCCeeCCcE--EEEECchh----------HHHhcCcccccCCchhcCCCeeEEE-CCeeechHHHHHH--hCcc
Confidence 478999999998742 45666554 49999999999999963 4678754 8999999999984 5788
Q ss_pred Ccccc
Q 010559 292 CQPLY 296 (507)
Q Consensus 292 C~~c~ 296 (507)
|..|.
T Consensus 68 c~~c~ 72 (114)
T 1j2o_A 68 GHMGS 72 (114)
T ss_dssp CSSCB
T ss_pred cCcCC
Confidence 88775
No 80
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=98.53 E-value=3.7e-08 Score=87.03 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=50.5
Q ss_pred cccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCC-CCCceEEccCCceecccccccc
Q 010559 210 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEP-RDTKYLSLDDGRKLCLECLDSA 285 (507)
Q Consensus 210 ~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~-~g~~y~~l~dGr~~C~~C~~~~ 285 (507)
..+.++|..|+++|.+.. ++.+.+.. ||..||+|..|++.|. .+..|+.. +|++||..||.+.
T Consensus 58 ~~~~~~C~~C~~~I~~~~--~v~a~~~~----------wH~~CF~C~~C~~~L~~~g~~f~~~-dg~~yC~~cy~~~ 121 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRF--LLYAMDSY----------WHSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYIRL 121 (123)
T ss_dssp CSSCSBBSSSSSBCCSSS--EEEETTEE----------EETTTSBCTTTCCBGGGTTCCCBCS-SSCCBCHHHHHHH
T ss_pred CccCCcCcCCCCCcCCcE--EEEeCCcE----------EcccccCcCcCCCcccccCCceEEE-CCEEeCHHHhhhh
Confidence 346789999999999742 46666664 4999999999999996 35678754 8999999999874
No 81
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.50 E-value=5.9e-08 Score=80.75 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=52.8
Q ss_pred ccCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccccCCCC
Q 010559 211 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 290 (507)
Q Consensus 211 ~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~ 290 (507)
...++|..|+++|.+.. .+.+.+.. ||..||+|..|++.|..+ .|+. .+|++||..||.+ .+.+
T Consensus 13 ~~~~~C~~C~~~I~~~~--~v~a~~~~----------~H~~CF~C~~C~~~L~~~-~~~~-~~g~~yC~~~y~~--~f~~ 76 (91)
T 2d8y_A 13 PARETCVECQKTVYPME--RLLANQQV----------FHISCFRCSYCNNKLSLG-TYAS-LHGRIYCKPHFNQ--LFKS 76 (91)
T ss_dssp SSSCBCTTTCCBCCTTS--EEECSSSE----------EETTTCBCTTTCCBCCTT-TCCC-SSSCCCCHHHHHH--HSCC
T ss_pred CCCCcCccCCCccCCce--eEEECCCE----------ECCCCCeeCCCCCCCCCC-CcEe-ECCEEECHHHHHH--HhCC
Confidence 45789999999998643 45555554 499999999999999643 4764 4899999999988 4577
Q ss_pred CCcc
Q 010559 291 ECQP 294 (507)
Q Consensus 291 ~C~~ 294 (507)
+|.-
T Consensus 77 kc~~ 80 (91)
T 2d8y_A 77 KGNY 80 (91)
T ss_dssp CSCC
T ss_pred CcCc
Confidence 7763
No 82
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.50 E-value=7.6e-08 Score=79.74 Aligned_cols=64 Identities=17% Similarity=0.338 Sum_probs=50.3
Q ss_pred cCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceecccccccccCCCCC
Q 010559 212 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 291 (507)
Q Consensus 212 f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~ 291 (507)
..++|..|++.|.+. .+.+.+.. ||..||+|..|++.|. +..|+.. ++++||..||.+. +.++
T Consensus 24 ~~~~C~~C~~~I~~~---~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~y~~~--f~p~ 86 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA---VVKARDKY----------RHPECFVCADCNLNLK-QKGYFFV-EGELYCETHARAR--TSGP 86 (89)
T ss_dssp SCCBCTTTCCBCCSC---CEESSSCE----------ECTTTCCCSSSCCCTT-TSCCEEE-TTEEECHHHHHHH--SSSC
T ss_pred cCCCcccCCCEeccc---EEEECCce----------ECccCCEecCCCCCCC-CCCeEeE-CCEEECHHHHHHH--hCCC
Confidence 467899999999973 46665554 4999999999999996 4467765 8999999999884 3555
Q ss_pred C
Q 010559 292 C 292 (507)
Q Consensus 292 C 292 (507)
|
T Consensus 87 ~ 87 (89)
T 1x64_A 87 S 87 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 83
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.43 E-value=4.9e-08 Score=79.09 Aligned_cols=60 Identities=15% Similarity=0.309 Sum_probs=48.6
Q ss_pred cCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceeccccccccc
Q 010559 212 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 286 (507)
Q Consensus 212 f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v 286 (507)
..++|..|+++|.+. .+.+.+.. ||..||+|..|++.|. +..|+.. ++++||..||.+.+
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~cy~~~~ 73 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDRH----------RHPECYVCTDCGTNLK-QKGHFFV-EDQIYCEKHARERV 73 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSCE----------ECTTTTSCSSSCCCHH-HHCCEES-SSCEECHHHHHHHH
T ss_pred CCCccccCCCCccCc---EEEECcce----------eCcCcCeeCCCCCCCC-CCCeEeE-CCEEECHHHHHHHh
Confidence 467999999999974 56666654 4999999999999995 5567755 89999999998753
No 84
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.41 E-value=2.5e-07 Score=75.61 Aligned_cols=62 Identities=21% Similarity=0.300 Sum_probs=47.4
Q ss_pred cCccccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEE-ccCCceeccccccccc
Q 010559 212 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLS-LDDGRKLCLECLDSAI 286 (507)
Q Consensus 212 f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~-l~dGr~~C~~C~~~~v 286 (507)
..++|..|++.|.... .+.+.+.. ||..||+|..|++.|. +..|+. ..+|++||..||.+.+
T Consensus 14 ~~~~C~~C~~~I~~~e--~v~a~~~~----------wH~~CF~C~~C~~~L~-~~~~~~~~~~g~~yC~~~y~~~~ 76 (82)
T 2co8_A 14 AGDLCALCGEHLYVLE--RLCVNGHF----------FHRSCFRCHTCEATLW-PGGYEQHPGDGHFYCLQHLPQTD 76 (82)
T ss_dssp SSCBCSSSCCBCCTTT--BCCBTTBC----------CBTTTCBCSSSCCBCC-TTSEECCTTTCCCEETTTCCCCC
T ss_pred CCCCCcccCCCcccce--EEEECCCe----------eCCCcCEEcCCCCCcC-CCceeEeCcCCEEEChHHHHhhh
Confidence 3578999999997543 34455554 4999999999999995 445654 3689999999998853
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.29 E-value=7.1e-05 Score=50.26 Aligned_cols=29 Identities=31% Similarity=0.881 Sum_probs=27.0
Q ss_pred CCcCccCCcccccCceeeecCceeccCCc
Q 010559 153 YRICAGCNTEIGHGRYLSCMEAFWHPECF 181 (507)
Q Consensus 153 ~~~C~~C~k~I~~g~~i~alg~~wHp~CF 181 (507)
.+.|..|++.|+..+.+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 35899999999999999999999999998
No 86
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=92.60 E-value=0.057 Score=34.20 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=19.5
Q ss_pred CChhHHHHHHHhhhhhhhccCCc
Q 010559 40 FDNEEIDRAIALSLVEVDQKGKK 62 (507)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~ 62 (507)
.|.|||.-|||||++|..++.++
T Consensus 2 ~EeEEl~LAlAlS~sEae~~~~~ 24 (26)
T 2d3g_P 2 QEEEELQLALALSQSEAEEKXXX 24 (26)
T ss_pred chHHHHHHHHHHHHHHHHHhccc
Confidence 46889999999999998877654
No 87
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=83.83 E-value=2.8 Score=34.01 Aligned_cols=18 Identities=44% Similarity=0.427 Sum_probs=15.4
Q ss_pred CCChhHHHHHHHhhhhhh
Q 010559 39 GFDNEEIDRAIALSLVEV 56 (507)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~ 56 (507)
+.+.|||.|||+|||-|.
T Consensus 9 ~~eDeDLkrAieLSL~Es 26 (81)
T 1q0v_A 9 EDEEELIRKAIELSLKES 26 (81)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred cCchHHHHHHHHHhHHHH
Confidence 567899999999999664
No 88
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=81.31 E-value=0.23 Score=41.67 Aligned_cols=33 Identities=18% Similarity=0.049 Sum_probs=27.5
Q ss_pred cccccCCCCeeeeeccccccccccceeeeeeee
Q 010559 357 RRPRIGAGYRLIDMITEPYRLIRRCEVTAILIL 389 (507)
Q Consensus 357 ~~~~~~~G~rilei~~~p~~~~~~~eV~~Il~l 389 (507)
+...|++||.|++|||+++...++.+|..+|..
T Consensus 43 r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~ 75 (95)
T 3gge_A 43 SVKTICVGDHIESINGENIVGWRHYDVAKKLKE 75 (95)
T ss_dssp HCTTCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred hcCCCCCCCEEEEECCEEccCCCHHHHHHHHHh
Confidence 567899999999999999988887777766544
No 89
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=79.26 E-value=0.31 Score=41.62 Aligned_cols=104 Identities=19% Similarity=0.429 Sum_probs=62.0
Q ss_pred cccCCCCCCCCCc------ceeecCCccccccccccc--cCccccccCCccccCcccceeeccccccccccCCCccCCCC
Q 010559 181 FRCHSCNLPITDV------EFSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGT 252 (507)
Q Consensus 181 F~Cs~C~~~L~~~------~f~~~~gk~yCk~CY~~~--f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~C 252 (507)
+.|..|-..+... .....=|..||..|..+. ....|..|.+.+.......+ +. ...-
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l-~i--------------~~~~ 72 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI-YI--------------GSGT 72 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC-BC--------------SSSS
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccc-cc--------------CCCC
Confidence 5566665554331 033345778888887553 34589999998876531111 11 2245
Q ss_pred CccCCCCCcCCC----CCceEEccCCceecccccccccCCCCCCccccHHH
Q 010559 253 PRCCSCERMEPR----DTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 299 (507)
Q Consensus 253 F~C~~C~~~l~~----g~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~~~I 299 (507)
..|..|...+.. +...+...=|..||..|...-+.....|--|..+|
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcC
Confidence 778888776532 22234556789999999876544455666666443
No 90
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=78.64 E-value=0.2 Score=42.70 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=28.4
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
.|.+||+|++||++++......++..+|...|-+..|
T Consensus 67 ~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l 103 (117)
T 1ujd_A 67 KLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEI 103 (117)
T ss_dssp SCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEE
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEE
Confidence 3889999999999999887666666666555555555
No 91
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=77.85 E-value=0.17 Score=43.61 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=30.0
Q ss_pred ccCCCCeeeeecccccc-ccccceeeeeeeecCchhhhhhhhhhcch
Q 010559 360 RIGAGYRLIDMITEPYR-LIRRCEVTAILILYGLPRLLTGSILAHEM 405 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~-~~~~~eV~~Il~l~glP~~L~gsilaHE~ 405 (507)
+|.+||+|++|||.++. .....++..+|...|-+..| +|.+++
T Consensus 72 ~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l---~v~r~~ 115 (128)
T 2db5_A 72 RLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRL---IVAREP 115 (128)
T ss_dssp CCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCSEEEE---EEEECC
T ss_pred CCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCeEEE---EEEcCC
Confidence 48899999999999997 66666666555545555555 444443
No 92
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=73.81 E-value=0.28 Score=40.72 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=25.0
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
.|.+||+|++|||.++......++..++.-.|-+..|
T Consensus 51 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l 87 (105)
T 2awx_A 51 KLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYL 87 (105)
T ss_dssp CCCTTCEEEEETTEECTTCBHHHHHHHHHSCCSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 3889999999999999765554444444334444444
No 93
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=72.95 E-value=0.29 Score=41.75 Aligned_cols=37 Identities=16% Similarity=-0.041 Sum_probs=26.4
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeec----Cchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILY----GLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~----glP~~L 396 (507)
.|.+||+|++|||.++....+.++..+|... |-+..|
T Consensus 61 gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l 101 (118)
T 1v6b_A 61 GVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDL 101 (118)
T ss_dssp SSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEE
Confidence 6889999999999999876666555554332 445545
No 94
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=71.31 E-value=0.32 Score=39.23 Aligned_cols=37 Identities=5% Similarity=-0.031 Sum_probs=27.2
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
.|++||+|++|||.++......++..+|.-.+-...|
T Consensus 39 ~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L 75 (88)
T 3e17_A 39 NLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQL 75 (88)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 4889999999999999776666666665555444444
No 95
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=71.04 E-value=0.3 Score=39.56 Aligned_cols=35 Identities=9% Similarity=0.060 Sum_probs=27.1
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPR 394 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~ 394 (507)
-+.+||+|++|||+++....+.+|..+|...|-..
T Consensus 40 Gl~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V 74 (82)
T 1r6j_A 40 GLLTEHNICEINGQNVIGLKDSQIADILSTSGTVV 74 (82)
T ss_dssp TCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEE
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEE
Confidence 36699999999999999888888777665444433
No 96
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=70.17 E-value=0.44 Score=39.63 Aligned_cols=32 Identities=3% Similarity=-0.032 Sum_probs=23.5
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecC
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYG 391 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~g 391 (507)
.|.+||+|++|||+++......++..+|...+
T Consensus 54 ~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~ 85 (97)
T 2ejy_A 54 SLHVGDEILEINGTNVTNHSVDQLQKAMKETK 85 (97)
T ss_dssp CCCTTCEEEEETTBCCCSSCSHHHHHHHHHCC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 37899999999999998755556555544333
No 97
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=69.93 E-value=0.77 Score=39.50 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=25.3
Q ss_pred cccccCCCCeeeeeccccccccccceeeeeee
Q 010559 357 RRPRIGAGYRLIDMITEPYRLIRRCEVTAILI 388 (507)
Q Consensus 357 ~~~~~~~G~rilei~~~p~~~~~~~eV~~Il~ 388 (507)
....|++||+|++||++++....+.+|..+|.
T Consensus 46 ~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk 77 (113)
T 3soe_A 46 WCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLK 77 (113)
T ss_dssp GSTTCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred HhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 45678999999999999999877666555544
No 98
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=68.91 E-value=0.31 Score=38.77 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=22.2
Q ss_pred cccCCCCeeeeeccccccccccceeeeeee
Q 010559 359 PRIGAGYRLIDMITEPYRLIRRCEVTAILI 388 (507)
Q Consensus 359 ~~~~~G~rilei~~~p~~~~~~~eV~~Il~ 388 (507)
..|.+||+|++|||+++......++..++.
T Consensus 45 agl~~GD~I~~vng~~v~~~~~~~~~~~~~ 74 (87)
T 4e34_A 45 GGLHVGDAILAVNGVNLRDTKHKEAVTILS 74 (87)
T ss_dssp SCCCTTEEEEEETTEECTTCCHHHHHHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 367899999999999997665555444443
No 99
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=68.55 E-value=0.48 Score=40.01 Aligned_cols=37 Identities=11% Similarity=0.202 Sum_probs=25.7
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
.|.+||+|++||+.++......++..+|...|-+..|
T Consensus 68 ~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l 104 (117)
T 2ehr_A 68 ALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVF 104 (117)
T ss_dssp SCCTTCEEEEESSCBCTTCCHHHHHHHHHTSCSSEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 3889999999999999876655554444444444444
No 100
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=68.35 E-value=0.43 Score=39.95 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=25.8
Q ss_pred cCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
|.+||+|++||+.++......++..+|...|-+..|
T Consensus 63 L~~GD~Il~vng~~v~~~~~~~~~~~l~~~g~~v~l 98 (111)
T 1uju_A 63 LRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTV 98 (111)
T ss_dssp CCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 889999999999999876665655554444444444
No 101
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=68.32 E-value=2.4 Score=27.81 Aligned_cols=27 Identities=22% Similarity=0.513 Sum_probs=18.7
Q ss_pred ccCCCCCCCCCcceeecCCcccccccc
Q 010559 182 RCHSCNLPITDVEFSMSGNRPYHKHCY 208 (507)
Q Consensus 182 ~Cs~C~~~L~~~~f~~~~gk~yCk~CY 208 (507)
+|..|++.+-..+-...+|+.|++.||
T Consensus 5 ~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp BCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred cCCccCCEEecceeEEECCeEecccCC
Confidence 577888876544444467888888875
No 102
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=67.70 E-value=0.47 Score=40.33 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=26.7
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
.|.+||+|++||++++......++..+|...|-+..|
T Consensus 60 ~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l 96 (117)
T 1v62_A 60 ALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRL 96 (117)
T ss_dssp CCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence 3889999999999999776666666655544444444
No 103
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=70.41 E-value=1.1 Score=37.80 Aligned_cols=36 Identities=14% Similarity=0.019 Sum_probs=27.9
Q ss_pred cccCCCCeeeeeccccccccccceeeeeeeecCchh
Q 010559 359 PRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPR 394 (507)
Q Consensus 359 ~~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~ 394 (507)
..|.+||+|++|||.++......++..+|...+-..
T Consensus 70 aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v 105 (112)
T 2lob_A 70 GGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEI 105 (112)
Confidence 457899999999999998777777777766544333
No 104
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=66.73 E-value=0.44 Score=38.21 Aligned_cols=21 Identities=14% Similarity=-0.004 Sum_probs=17.5
Q ss_pred ccCCCCeeeeecccccccccc
Q 010559 360 RIGAGYRLIDMITEPYRLIRR 380 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~ 380 (507)
-|.+||+|+.|||.++.....
T Consensus 49 Gl~~GD~I~~vng~~v~~~~~ 69 (91)
T 1m5z_A 49 GLKPYDRLLQVNHVRTRDFDC 69 (91)
T ss_dssp TCCTTCEEEEETTEECTTCCH
T ss_pred CCCCCCEEEEECCEECCCCCH
Confidence 478999999999999876543
No 105
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=66.70 E-value=0.47 Score=38.66 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=23.8
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCch
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLP 393 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP 393 (507)
.|.+||+|++|||.++......++..+|...|-+
T Consensus 48 GL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~ 81 (90)
T 1y7n_A 48 GVRVGHRIIEINGQSVVATPHEKIVHILSNAVGE 81 (90)
T ss_dssp TCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 4789999999999999755555555554433433
No 106
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=66.47 E-value=0.63 Score=39.87 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=25.4
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCch
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLP 393 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP 393 (507)
+|.+||+|++|||+++......++..+|.-.|-+
T Consensus 71 ~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~ 104 (118)
T 3b76_A 71 RIKTGDILLNVDGVELTEVSRSEAVALLKRTSSS 104 (118)
T ss_dssp SSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCSE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 4889999999999999877666665555444433
No 107
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=66.25 E-value=0.46 Score=38.47 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=19.2
Q ss_pred ccCCCCeeeeeccccccccccceee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVT 384 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~ 384 (507)
.|.+||+|++|||.++......++.
T Consensus 47 ~L~~GD~I~~vng~~v~~~~~~~~~ 71 (95)
T 2vwr_A 47 RLSSNDRVLAINGHDLKYGTPELAA 71 (95)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHH
Confidence 3889999999999998765444433
No 108
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=66.12 E-value=0.6 Score=38.61 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=25.1
Q ss_pred cCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
|.+||+|++||+.++......++..+|...|-+..|
T Consensus 57 L~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l 92 (105)
T 1wha_A 57 LQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIAL 92 (105)
T ss_dssp CCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 889999999999999876555555544433444444
No 109
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=66.04 E-value=0.47 Score=37.37 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=21.3
Q ss_pred ccCCCCeeeeeccccccccccceeeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAIL 387 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il 387 (507)
-|.+||+|++|||.++......++..+|
T Consensus 40 Gl~~GD~I~~ing~~v~~~~~~~~~~~l 67 (83)
T 2kv8_A 40 GLRAGDQILAVNEINVKKASHEDVVKLI 67 (83)
T ss_dssp TCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4789999999999999876555554443
No 110
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=65.73 E-value=0.52 Score=38.12 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=23.0
Q ss_pred cCCCCeeeeeccccccccccceeeeeeeecCchh
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPR 394 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~ 394 (507)
|.+||+|+.||+.++......++..++...|-+.
T Consensus 52 l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v 85 (96)
T 1d5g_A 52 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVV 85 (96)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 8899999999999998654444444433334333
No 111
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=65.69 E-value=0.48 Score=38.46 Aligned_cols=36 Identities=25% Similarity=0.192 Sum_probs=24.3
Q ss_pred cCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
|.+||+|+.|||.++......++..+|...|-+..|
T Consensus 51 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 86 (97)
T 2jil_A 51 IKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAAL 86 (97)
T ss_dssp CCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 789999999999999875555544444333444333
No 112
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.55 E-value=0.47 Score=38.12 Aligned_cols=27 Identities=7% Similarity=0.055 Sum_probs=20.0
Q ss_pred ccCCCCeeeeeccccccccccceeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
.|.+||+|++||++++......++..+
T Consensus 48 gl~~GD~I~~vng~~v~~~~~~~~~~~ 74 (93)
T 2dkr_A 48 GLKRGDQLLSVNGVSVEGEQHEKAVEL 74 (93)
T ss_dssp CCCTTCBEEEETTEECTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 378999999999999986544444333
No 113
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=65.48 E-value=0.52 Score=40.17 Aligned_cols=35 Identities=23% Similarity=0.144 Sum_probs=24.1
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPR 394 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~ 394 (507)
+|.+||+|++|||+++......++..+|.-.|-+.
T Consensus 72 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v 106 (117)
T 2byg_A 72 RLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVV 106 (117)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 38899999999999998655555544444334333
No 114
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=65.31 E-value=0.59 Score=37.54 Aligned_cols=37 Identities=11% Similarity=-0.115 Sum_probs=24.8
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
-|.+||+|+.|||+++......++..+|...|-+..|
T Consensus 44 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 80 (91)
T 2vsp_A 44 GLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTL 80 (91)
T ss_dssp TCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3789999999999999755555555544433444333
No 115
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=65.23 E-value=0.52 Score=37.66 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=20.2
Q ss_pred ccCCCCeeeeeccccccccccceeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
-|.+||+|++||+.++......++..+
T Consensus 44 Gl~~GD~I~~ing~~v~~~~~~~~~~~ 70 (89)
T 2q3g_A 44 GVAVGDWVLSIDGENAGSLTHIEAQNK 70 (89)
T ss_dssp TCCTTCEEEEETTEEGGGCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 478999999999999986544444333
No 116
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=65.01 E-value=0.55 Score=38.72 Aligned_cols=31 Identities=13% Similarity=0.031 Sum_probs=23.4
Q ss_pred cccCCCCeeeeeccccccccccceeeeeeee
Q 010559 359 PRIGAGYRLIDMITEPYRLIRRCEVTAILIL 389 (507)
Q Consensus 359 ~~~~~G~rilei~~~p~~~~~~~eV~~Il~l 389 (507)
..|.+||+|++||++++......++..+|..
T Consensus 54 ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~ 84 (101)
T 2yt7_A 54 GALSIGDRLTAINGTSLVGLPLAACQAAVRE 84 (101)
T ss_dssp SSCCTTCEEEEESSCBCTTSCHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 4578999999999999966555566555543
No 117
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=64.86 E-value=0.6 Score=38.64 Aligned_cols=26 Identities=8% Similarity=0.047 Sum_probs=20.2
Q ss_pred cCCCCeeeeeccccccccccceeeee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
|.+||+|++|||.++......++..+
T Consensus 63 L~~GD~Il~ing~~v~~~~~~~~~~~ 88 (107)
T 3nfk_A 63 LNEGDQVVLINGRDIAEHTHDQVVLF 88 (107)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred cCCCCEEEEECCEECCCCCHHHHHHH
Confidence 88999999999999886655444433
No 118
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=64.61 E-value=0.52 Score=38.68 Aligned_cols=27 Identities=7% Similarity=0.094 Sum_probs=20.0
Q ss_pred ccCCCCeeeeeccccccccccceeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
.|.+||+|++||+.++......++..+
T Consensus 52 ~L~~GD~I~~vng~~v~~~~~~~~~~~ 78 (102)
T 2i1n_A 52 RLGVNDCVLRVNEVDVSEVVHSRAVEA 78 (102)
T ss_dssp CCCTTCEEEEETTEECSSCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 388999999999999976544443333
No 119
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=64.54 E-value=0.53 Score=38.52 Aligned_cols=27 Identities=4% Similarity=0.235 Sum_probs=20.3
Q ss_pred cCCCCeeeeeccccccccccceeeeee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAIL 387 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~Il 387 (507)
|.+||+|++|||.++......++..++
T Consensus 56 L~~GD~I~~vng~~v~~~~~~~~~~~~ 82 (101)
T 2jik_A 56 LQEGDKILSVNGQDLKNLLHQDAVDLF 82 (101)
T ss_dssp CCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 889999999999999865444444333
No 120
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=64.46 E-value=0.6 Score=42.82 Aligned_cols=36 Identities=11% Similarity=-0.036 Sum_probs=25.9
Q ss_pred cccCCCCeeeeeccccccccccceeeeeeeecCchh
Q 010559 359 PRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPR 394 (507)
Q Consensus 359 ~~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~ 394 (507)
.+|++||+|++|||+++......++..+|...|-+.
T Consensus 128 G~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g~~v 163 (170)
T 3egg_C 128 GRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRV 163 (170)
T ss_dssp CCCCTTCEEEEETTEECTTBCHHHHHHHHHHCCSEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence 348999999999999998776666555544444333
No 121
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=68.10 E-value=1.4 Score=38.48 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=18.9
Q ss_pred CCCCCChhHHHHHHHhhhhhhhc
Q 010559 36 DSSGFDNEEIDRAIALSLVEVDQ 58 (507)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ 58 (507)
+.+..+++||-+||||||.|..+
T Consensus 90 dlt~d~KDDLQ~AIALSLqES~~ 112 (129)
T 2lva_A 90 DLTHDNKDDLQAAIALSLLESPK 112 (129)
Confidence 45555799999999999988765
No 122
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=64.23 E-value=0.45 Score=40.32 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=28.8
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeee---cCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILIL---YGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l---~glP~~L 396 (507)
-|.+||+|+.|||.++......+|..+|.. .|.|+.|
T Consensus 56 GL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~L 95 (101)
T 3qik_A 56 GLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRL 95 (101)
T ss_dssp TCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEE
Confidence 478999999999999976667777777665 3666665
No 123
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=64.14 E-value=0.55 Score=39.00 Aligned_cols=37 Identities=8% Similarity=-0.045 Sum_probs=24.1
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
.|.+||+|+.||+.++......++..++...|-+..|
T Consensus 58 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l 94 (107)
T 1wf8_A 58 RIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRF 94 (107)
T ss_dssp SSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEE
Confidence 3889999999999999765544443333333444333
No 124
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=64.09 E-value=0.61 Score=39.45 Aligned_cols=37 Identities=11% Similarity=0.015 Sum_probs=26.0
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
.|.+||+|++||+.++......++..+|...|-+..|
T Consensus 62 gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l 98 (117)
T 2csj_A 62 LLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAI 98 (117)
T ss_dssp HBCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEE
T ss_pred cCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEE
Confidence 4789999999999999876555544444444555555
No 125
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=64.06 E-value=0.63 Score=37.22 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=22.9
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecC
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYG 391 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~g 391 (507)
-|.+||+|++||+.++......++..+|...|
T Consensus 45 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 76 (90)
T 2he4_A 45 GLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 76 (90)
T ss_dssp TCCTTCEEEEETTEECTTSCHHHHHHHHTTSS
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 37899999999999998765555544443333
No 126
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=63.89 E-value=0.58 Score=38.71 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=24.3
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
+|.+||+|++||+.++......++..++...|-+..|
T Consensus 56 ~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l 92 (106)
T 3axa_A 56 RLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTL 92 (106)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 3889999999999999865544444443333444333
No 127
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.76 E-value=0.49 Score=40.20 Aligned_cols=37 Identities=11% Similarity=0.207 Sum_probs=25.7
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
.|.+||+|++||++++......++..+|...|-+..|
T Consensus 65 ~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l 101 (120)
T 2eno_A 65 RLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSL 101 (120)
T ss_dssp CSCTTCEEEEETTEECCSCCHHHHHHHHHHHCSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 3889999999999999876655554444434444444
No 128
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=63.65 E-value=0.69 Score=38.53 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=24.1
Q ss_pred cCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
|.+||+|+.||+.++......++..++...|-+..|
T Consensus 58 L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~v~l 93 (113)
T 1um7_A 58 LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI 93 (113)
T ss_dssp CCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEE
Confidence 889999999999999876544444433333444444
No 129
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=63.62 E-value=0.53 Score=38.59 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=23.1
Q ss_pred ccccCCCCeeeeeccccccccccceeeeeee
Q 010559 358 RPRIGAGYRLIDMITEPYRLIRRCEVTAILI 388 (507)
Q Consensus 358 ~~~~~~G~rilei~~~p~~~~~~~eV~~Il~ 388 (507)
...|.+||+|++||++++......++..+|.
T Consensus 45 ~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~ 75 (96)
T 1ujv_A 45 CPGLCEGDLIVEINQQNVQNLSHTEVVDILK 75 (96)
T ss_dssp STTCCSSCEEEEETTEECSSCCHHHHHHHHH
T ss_pred cCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 3457899999999999998765555554443
No 130
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=62.77 E-value=0.39 Score=39.70 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=20.0
Q ss_pred ccCCCCeeeeeccccccccccceeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
.|.+||+|++||++++......++..+
T Consensus 52 ~L~~GD~Il~ing~~v~~~~~~~~~~~ 78 (103)
T 1uep_A 52 RLHPGDELVYVDGIPVAGKTHRYVIDL 78 (103)
T ss_dssp CCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 388999999999999976544444333
No 131
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=62.63 E-value=0.7 Score=36.47 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=19.6
Q ss_pred cCCCCeeeeeccccccccccceeeee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
|.+||+|++|||.++......++..+
T Consensus 44 l~~GD~I~~vng~~v~~~~~~~~~~~ 69 (85)
T 2i04_A 44 METGDVIVSVNDTCVLGHTHAQVVKI 69 (85)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHH
Confidence 78999999999999976444444433
No 132
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=62.56 E-value=0.64 Score=38.92 Aligned_cols=37 Identities=11% Similarity=-0.023 Sum_probs=24.5
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
+|.+||+|+.|||.++......++..++...|-+..|
T Consensus 53 ~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l 89 (113)
T 2g5m_B 53 RIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRF 89 (113)
T ss_dssp CSCTTCBEEEETTEECSSCCHHHHHHHHHHSCSSCEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEE
Confidence 3889999999999999765544443333334444444
No 133
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=62.51 E-value=0.65 Score=38.33 Aligned_cols=38 Identities=5% Similarity=-0.010 Sum_probs=26.8
Q ss_pred cccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 359 PRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 359 ~~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
..|.+||+|+.||+.++......++..+|...|-+..|
T Consensus 45 aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 82 (103)
T 1v5l_A 45 ANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCL 82 (103)
T ss_dssp GTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEEC
T ss_pred cCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence 34789999999999999875555655555444555544
No 134
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=62.39 E-value=0.67 Score=37.39 Aligned_cols=28 Identities=29% Similarity=0.234 Sum_probs=21.3
Q ss_pred ccCCCCeeeeeccccccccccceeeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAIL 387 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il 387 (507)
.|.+||+|++|||.++......++..+|
T Consensus 46 ~L~~GD~I~~ing~~v~~~~~~~~~~~l 73 (93)
T 3o46_A 46 LIHVGDELREVNGIPVEDKRPEEIIQIL 73 (93)
T ss_dssp CCCTTCEEEEETTEESTTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4889999999999999655555554444
No 135
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=61.69 E-value=0.62 Score=38.33 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=24.1
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
.|.+||+|++||+.++......++..++...|-+..|
T Consensus 59 gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l 95 (103)
T 1n7t_A 59 LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVEL 95 (103)
T ss_dssp SCCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHhhcCCCeEEE
Confidence 6889999999999999765544433333333433333
No 136
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=61.51 E-value=0.68 Score=39.62 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=20.3
Q ss_pred ccCCCCeeeeeccccccccccceeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
.|.+||+|++||++++......++..+
T Consensus 69 ~L~~GD~Il~Ing~~v~~~~~~~~~~~ 95 (124)
T 2daz_A 69 RMRIGDELLEINNQILYGRSHQNASAI 95 (124)
T ss_dssp CCCTTCEECEESSCBCTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 488999999999999976555444333
No 137
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=61.31 E-value=1.3 Score=35.44 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=22.1
Q ss_pred cccCCCCeeeeeccccccccccceeeeee
Q 010559 359 PRIGAGYRLIDMITEPYRLIRRCEVTAIL 387 (507)
Q Consensus 359 ~~~~~G~rilei~~~p~~~~~~~eV~~Il 387 (507)
..|++||+|++|||+++......++..+|
T Consensus 42 agL~~GD~I~~Ing~~v~~~~~~~~~~~l 70 (88)
T 1kwa_A 42 GTLHVGDEIREINGISVANQTVEQLQKML 70 (88)
T ss_dssp TCCCTTCEEEEETTEEGGGSCHHHHHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 45789999999999999865555555444
No 138
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.14 E-value=0.68 Score=38.10 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=18.7
Q ss_pred cCCCCeeeeeccccccccccceee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVT 384 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~ 384 (507)
|.+||+|+.||+.++......++.
T Consensus 57 l~~GD~I~~vng~~v~~~~~~~~~ 80 (104)
T 2djt_A 57 LEVGDLVLHINGESTQGLTHAQAV 80 (104)
T ss_dssp CCTTCBEEEETTEECTTCCHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHH
Confidence 889999999999998765444433
No 139
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=61.09 E-value=1.1 Score=37.18 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=23.5
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILIL 389 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l 389 (507)
+|.+||+|++||+.++......++..+|..
T Consensus 50 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 79 (103)
T 1ufx_A 50 QLKVGHVILEVNGLTLRGKEHREAARIIAE 79 (103)
T ss_dssp SSCTTCBCCEETTEECTTCBHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHH
Confidence 488999999999999987776666555443
No 140
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=61.00 E-value=0.66 Score=44.23 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=18.1
Q ss_pred ccCCCCeeeeecccccccccccee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEV 383 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV 383 (507)
.|.+||+|+.|||.++......++
T Consensus 50 GL~~GD~Il~VNG~~V~~~s~~dl 73 (216)
T 2krg_A 50 GLRAQDRIVEVNGVCMEGKQHGDV 73 (216)
T ss_dssp TCCTTCBCCEETTEECTTCCTHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 378999999999999873333333
No 141
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=60.92 E-value=0.76 Score=41.61 Aligned_cols=37 Identities=14% Similarity=0.032 Sum_probs=26.2
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
+|.+||+|++||++++......++..+|...+-+..|
T Consensus 148 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l 184 (196)
T 3gsl_A 148 RLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYL 184 (196)
T ss_dssp CCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEEEEE
T ss_pred CCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCCeEEE
Confidence 3899999999999999875555555554444444443
No 142
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=60.87 E-value=0.7 Score=37.56 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=19.5
Q ss_pred cCCCCeeeeeccccccccccceeeee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
|.+||+|+.||+.++......++..+
T Consensus 49 l~~GD~I~~vng~~v~~~~~~~~~~~ 74 (97)
T 1n7e_A 49 IHIGDRILAINSSSLKGKPLSEAIHL 74 (97)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHH
Confidence 88999999999999875444444433
No 143
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=60.86 E-value=0.65 Score=37.52 Aligned_cols=24 Identities=13% Similarity=0.165 Sum_probs=19.1
Q ss_pred ccCCCCeeeeecccccccccccee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEV 383 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV 383 (507)
.|.+||+|++||+.++......++
T Consensus 51 gL~~GD~I~~vng~~v~~~~~~~~ 74 (95)
T 1mfg_A 51 LLQPGDKIIQANGYSFINIEHGQA 74 (95)
T ss_dssp TCCTTCEEEEETTEECTTCBHHHH
T ss_pred CCCCCCEEEEECCEEcCCCCHHHH
Confidence 688999999999999976554443
No 144
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=60.85 E-value=1.4 Score=36.92 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=23.2
Q ss_pred cccCCCCeeeeeccccccccccceeeeeee
Q 010559 359 PRIGAGYRLIDMITEPYRLIRRCEVTAILI 388 (507)
Q Consensus 359 ~~~~~G~rilei~~~p~~~~~~~eV~~Il~ 388 (507)
.+|.+||+|++||+.++....+.++..+|.
T Consensus 58 G~l~~GD~Il~Vng~~~~~~~~~~~~~~l~ 87 (109)
T 1wi4_A 58 GRLKPGDQLVSINKESMIGVSFEEAKSIIT 87 (109)
T ss_dssp CSCCTTCBEEEETTSCCTTCCHHHHHHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 348899999999999998766666555543
No 145
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=60.82 E-value=1.2 Score=37.38 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=24.4
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
-|.+||+|+.|||.++......++..+|...|-+..|
T Consensus 55 GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 91 (114)
T 2edz_A 55 GLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL 91 (114)
T ss_dssp TCCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3789999999999999875444444443333444444
No 146
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=60.80 E-value=0.7 Score=38.94 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=18.3
Q ss_pred ccCCCCeeeeecccccc-cccccee
Q 010559 360 RIGAGYRLIDMITEPYR-LIRRCEV 383 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~-~~~~~eV 383 (507)
.|.+||+|++|||.++. .....++
T Consensus 67 ~l~~GD~Il~ing~~v~~~~~~~~~ 91 (117)
T 2o2t_A 67 RLKETDQILAINGQALDQTITHQQA 91 (117)
T ss_dssp CCCTTCEEEEETTEECCTTSCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCCHHHH
Confidence 38899999999999997 4433333
No 147
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=60.65 E-value=0.62 Score=38.15 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=18.3
Q ss_pred cCCCCeeeeecccccccccccee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEV 383 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV 383 (507)
|.+||+|++||+.++......++
T Consensus 55 l~~GD~I~~vng~~v~~~~~~~~ 77 (103)
T 1wfv_A 55 MRVGDQIIEINGESTRDMTHARA 77 (103)
T ss_dssp SCTTCEEEEETTEECSSCCHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHH
Confidence 78999999999999876544443
No 148
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=60.43 E-value=0.73 Score=38.42 Aligned_cols=30 Identities=20% Similarity=0.105 Sum_probs=22.4
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILIL 389 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l 389 (507)
.|.+||+|+.||+.++......++..+|..
T Consensus 62 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 91 (108)
T 2d92_A 62 GLLPGDRLVSVNEYCLDNTSLAEAVEILKA 91 (108)
T ss_dssp CCCTTCEEEEESSCBCTTCCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 488999999999999987655555544433
No 149
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=60.25 E-value=0.82 Score=37.91 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=20.1
Q ss_pred cCCCCeeeeeccccccccccceeeeee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAIL 387 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~Il 387 (507)
|.+||+|+.||+.++......++..++
T Consensus 61 L~~GD~I~~vng~~v~~~~~~~~~~~~ 87 (108)
T 1q7x_A 61 IHKGDRVLAVNGVSLEGATHKQAVETL 87 (108)
T ss_dssp CCSSCEEEEETTEECBSCTTSHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 889999999999999755544443333
No 150
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.23 E-value=7.4 Score=32.74 Aligned_cols=45 Identities=16% Similarity=0.315 Sum_probs=28.2
Q ss_pred cccCCCCCCCCCcceeecCCccccccccccccCccccccCCcccc
Q 010559 181 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPT 225 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~C~~~I~~ 225 (507)
+.|..|...+........=|..||..|....+...|..|...+..
T Consensus 23 ~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred CCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 556666555544322214567788888776666778888877754
No 151
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=60.02 E-value=0.78 Score=38.22 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=18.2
Q ss_pred ccCCCCeeeeeccccccccccce
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCE 382 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~e 382 (507)
+|++||+|++|||+++......+
T Consensus 50 ~L~~GD~Il~Vng~~v~~~~~~~ 72 (106)
T 4amh_A 50 KLQIGDKLLAVNNVALEEVTHEE 72 (106)
T ss_dssp CCCTTCEEEEETTEECSSCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 48899999999999987544433
No 152
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=59.92 E-value=0.59 Score=38.70 Aligned_cols=37 Identities=14% Similarity=0.026 Sum_probs=26.6
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
.|.+||+|++|||+++......++..+|...+-...|
T Consensus 53 gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v~l 89 (103)
T 2dc2_A 53 GLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEF 89 (103)
T ss_dssp CCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEE
Confidence 6789999999999999876666665555444433333
No 153
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=59.87 E-value=0.83 Score=36.61 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=19.7
Q ss_pred cCCCCeeeeeccccccccccceeeee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
|.+||+|++|||.++......++..+
T Consensus 48 L~~GD~I~~vng~~v~~~~~~~~~~~ 73 (92)
T 2qg1_A 48 LMQGDQILMVNGEDVRNATQEAVAAL 73 (92)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHH
Confidence 88999999999999976544444333
No 154
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=59.70 E-value=0.73 Score=38.35 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=20.7
Q ss_pred cCCCCeeeeeccccccccccceeeeeee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAILI 388 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~Il~ 388 (507)
|.+||+|++|||+++......++..+|.
T Consensus 58 l~~GD~I~~ing~~v~~~~~~~~~~~l~ 85 (111)
T 2koj_A 58 LKAGDRLIEVNGVDLAGKSQEEVVSLLR 85 (111)
T ss_dssp SCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 7899999999999997654444444433
No 155
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=59.28 E-value=0.75 Score=37.31 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=19.1
Q ss_pred cCCCCeeeeeccccccccccceee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVT 384 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~ 384 (507)
|.+||+|+.||+.++......++.
T Consensus 56 L~~GD~I~~ing~~v~~~~~~~~~ 79 (98)
T 1ihj_A 56 LKVGDRILSLNGKDVRNSTEQAVI 79 (98)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHH
Confidence 889999999999999876444443
No 156
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=59.18 E-value=1.2 Score=37.04 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=16.8
Q ss_pred cCCCCeeeeecccccccccc
Q 010559 361 IGAGYRLIDMITEPYRLIRR 380 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~ 380 (507)
|.+||+|++||+.++.....
T Consensus 55 L~~GD~I~~vng~~v~~~~~ 74 (110)
T 1um1_A 55 LSLGDRILEVNGSSLLGLGY 74 (110)
T ss_dssp CCTTCEEEEESSCBCSSCCH
T ss_pred CCCCCEEEEECCEECCCCCH
Confidence 88999999999999875433
No 157
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=59.13 E-value=0.8 Score=38.50 Aligned_cols=35 Identities=11% Similarity=0.275 Sum_probs=24.5
Q ss_pred cccCCCCeeeeeccccccccccceeeeeeeecCch
Q 010559 359 PRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLP 393 (507)
Q Consensus 359 ~~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP 393 (507)
..|.+||+|+.||+.++......++..+|...|-+
T Consensus 60 agL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~ 94 (114)
T 1uew_A 60 AKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLS 94 (114)
T ss_dssp SSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 46789999999999999776555555544433333
No 158
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=59.02 E-value=0.64 Score=37.20 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=20.3
Q ss_pred ccCCCCeeeeeccccccccccceeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
.|.+||+|++||++++......++..+
T Consensus 48 gl~~GD~I~~ing~~v~~~~~~~~~~~ 74 (90)
T 1qav_A 48 ALFVGDAILSVNGEDLSSATHDEAVQA 74 (90)
T ss_dssp CCCTTEEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 578999999999999976554444333
No 159
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=59.01 E-value=0.75 Score=36.54 Aligned_cols=26 Identities=8% Similarity=0.031 Sum_probs=19.6
Q ss_pred ccCCCCeeeeeccccccccccceeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTA 385 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~ 385 (507)
-|.+||+|+.||+.++......++..
T Consensus 44 Gl~~GD~I~~ing~~v~~~~~~~~~~ 69 (88)
T 2uzc_A 44 NVRIGDVVLSIDGINAQGMTHLEAQN 69 (88)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHH
Confidence 37899999999999988764444433
No 160
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=58.95 E-value=2.8 Score=45.66 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=30.2
Q ss_pred hhhhcchhhHHHHhc-CCCCC-CCcchhhHHHHHHHHHhhc
Q 010559 399 SILAHEMMHAWLRLK-GYPNL-RPDVEEGICQVLAHMWLES 437 (507)
Q Consensus 399 silaHE~~Hawl~~~-g~~~L-~~~~eEG~cq~~a~~wl~~ 437 (507)
.+||||+.|-|..-. ....- ...+-|||...++++|++.
T Consensus 296 ~viaHElaHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~ 336 (605)
T 3cia_A 296 NLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEA 336 (605)
T ss_dssp HHHHHHHHHTTBTTTEEESSTTSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccCcchHhHHHHHHHHHHHHHHHHH
Confidence 599999999997532 12222 4589999999999999985
No 161
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=58.90 E-value=0.96 Score=39.40 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=24.5
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPR 394 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~ 394 (507)
-|.+||+|++|||+++......++..+|...|-+.
T Consensus 82 GL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v 116 (132)
T 3l4f_D 82 GLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTL 116 (132)
T ss_dssp TCCTTCEEEEESSSBCTTSCHHHHHHHHHHTTTEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence 48899999999999998665555544444344333
No 162
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=58.88 E-value=0.78 Score=36.10 Aligned_cols=26 Identities=8% Similarity=0.098 Sum_probs=19.8
Q ss_pred cccCCCCeeeeeccccccccccceee
Q 010559 359 PRIGAGYRLIDMITEPYRLIRRCEVT 384 (507)
Q Consensus 359 ~~~~~G~rilei~~~p~~~~~~~eV~ 384 (507)
..|.+||+|++||+.++......++.
T Consensus 41 aGl~~GD~I~~vng~~v~~~~~~~~~ 66 (85)
T 1rgw_A 41 SQLSQGDLVVAIDGVNTDTMTHLEAQ 66 (85)
T ss_dssp SSCCCCSBEEEETTEECTTCCHHHHH
T ss_pred cCCCCCCEEEEECCEECCCcCHHHHH
Confidence 35789999999999998875444433
No 163
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=58.68 E-value=0.73 Score=38.45 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=20.3
Q ss_pred cCCCCeeeeeccccccccccceeeeee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAIL 387 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~Il 387 (507)
|.+||+|+.|||.++......++..+|
T Consensus 57 l~~GD~I~~vng~~v~~~~~~~~~~~l 83 (111)
T 2dlu_A 57 LQTGDHILKIGGTNVQGMTSEQVAQVL 83 (111)
T ss_dssp CCSSCEEEEESSCCCTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 889999999999999865444444433
No 164
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=58.61 E-value=2.5 Score=46.19 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=30.0
Q ss_pred hhhhhhcchhhHHHHhc-CCC-----CC-------CCcchhhHHHHHHHHHhhc
Q 010559 397 TGSILAHEMMHAWLRLK-GYP-----NL-------RPDVEEGICQVLAHMWLES 437 (507)
Q Consensus 397 ~gsilaHE~~Hawl~~~-g~~-----~L-------~~~~eEG~cq~~a~~wl~~ 437 (507)
+.++||||+.|.|-.-. ... +| ...+-|||.+.++.+|+.+
T Consensus 267 ~~~liaHE~~H~W~g~~i~p~~~~~~d~~~~~~~~~lWl~EG~t~Y~~~l~~~r 320 (597)
T 4fgm_A 267 FLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGMTSYFDDYLLHT 320 (597)
T ss_dssp HHHHHHHHHHHTTBTTTBCBGGGSSCCCSSCCCCSTHHHHTHHHHHHHHHHHHH
T ss_pred hhhhHhhhhheeecccccccccccccccccccccccchhhhhHHHHHHHHHHHH
Confidence 35799999999995432 110 11 3478999999999999974
No 165
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=58.50 E-value=1.5 Score=34.82 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=18.1
Q ss_pred cCCCCeeeeecccccccccccee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEV 383 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV 383 (507)
|.+||+|++|||.++......++
T Consensus 46 L~~GD~I~~ing~~v~~~~~~~~ 68 (90)
T 2q9v_A 46 LRSGDELISVDGTPVIGKSHQLV 68 (90)
T ss_dssp CCTTCEEEEETTEECTTSCHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHH
Confidence 78999999999999965444443
No 166
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=58.37 E-value=0.72 Score=37.78 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=23.8
Q ss_pred cCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
|++||+|+.|||.++......++..++...|-+..|
T Consensus 54 l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l 89 (104)
T 3i4w_A 54 LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 89 (104)
T ss_dssp CCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 889999999999998765544443333333444444
No 167
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=58.21 E-value=0.68 Score=37.48 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=20.6
Q ss_pred ccCCCCeeeeeccccccccccceeeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAIL 387 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il 387 (507)
-|.+||.|++|||+++......++..+|
T Consensus 47 Gl~~GD~I~~ing~~v~~~~~~~~~~~l 74 (96)
T 2v90_A 47 GMQAGDRLVAVAGESVEGLGHEETVSRI 74 (96)
T ss_dssp TCCTTEEEEEETTEECTTCCHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 3789999999999999875444444443
No 168
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=57.97 E-value=0.89 Score=36.90 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=22.2
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILIL 389 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l 389 (507)
-|.+||+|++||+.++......++..+|..
T Consensus 54 GL~~GD~I~~ing~~v~~~~~~~~~~~l~~ 83 (96)
T 2ego_A 54 GLTPGDTIASVNGLNVEGIRHREIVDIIKA 83 (96)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 378999999999999987655555544433
No 169
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=57.89 E-value=1.6 Score=36.37 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=22.3
Q ss_pred ccCCCCeeeeeccccccccccceeeeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILI 388 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~ 388 (507)
+|.+||+|++||++++......++..+|.
T Consensus 51 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 79 (108)
T 3cbz_A 51 RIEPGDMLLQVNDMNFENMSNDDAVRVLR 79 (108)
T ss_dssp CCCTTCEEEEETTEETTSCCHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 48899999999999998765555555443
No 170
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=57.84 E-value=0.86 Score=38.22 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=19.7
Q ss_pred cCCCCeeeeeccccccccccceeeee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
|.+||+|+.||+.++......++..+
T Consensus 62 L~~GD~I~~vng~~v~~~~~~~~~~~ 87 (116)
T 2dm8_A 62 LWAGDQILEVNGVDLRNSSHEEAITA 87 (116)
T ss_dssp CCTTCEEEEETTEECSSSCHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHH
Confidence 88999999999999876544444333
No 171
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=57.82 E-value=0.85 Score=36.89 Aligned_cols=27 Identities=7% Similarity=0.111 Sum_probs=20.1
Q ss_pred ccCCCCeeeeeccccccccccceeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
.|.+||+|++||+.++......++..+
T Consensus 47 GL~~GD~I~~ing~~v~~~~~~~~~~~ 73 (94)
T 1vb7_A 47 DLRPGDIIVAINGQSAENMLHAEAQSK 73 (94)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 478999999999999987544444333
No 172
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=57.71 E-value=1.7 Score=37.50 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=24.1
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeec
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILY 390 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~ 390 (507)
.|.+||+|++|||.++....+.++..+|...
T Consensus 75 gL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 105 (130)
T 1i16_A 75 TVQPGDEILQLGGTAMQGLTRFEAWNIIKAL 105 (130)
T ss_dssp CCCTTCCEEECSSCBGGGSCHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 6889999999999999877666655554433
No 173
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.69 E-value=0.86 Score=37.17 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=18.9
Q ss_pred cccCCCCeeeeeccccccccccce
Q 010559 359 PRIGAGYRLIDMITEPYRLIRRCE 382 (507)
Q Consensus 359 ~~~~~G~rilei~~~p~~~~~~~e 382 (507)
..|.+||+|++||++++......+
T Consensus 46 agL~~GD~Il~ing~~v~~~~~~~ 69 (96)
T 2edv_A 46 GKLFPGDQILQMNNEPAEDLSWER 69 (96)
T ss_dssp TTSCTTCBEEEESSCBSTTCCHHH
T ss_pred hCCCCCCEEEEECCEECCCCCHHH
Confidence 357899999999999997654433
No 174
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=57.39 E-value=2.4 Score=33.24 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=31.3
Q ss_pred CCccCCCCCcCCCCCceEEccCCceecccccccccCCCCCCccccHHHHHHHhhcCCccccccceEEEehhhhHHhhccC
Q 010559 252 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGE 331 (507)
Q Consensus 252 CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~~~I~~f~e~l~~~i~~~iPv~LVe~~aLn~a~e~e 331 (507)
-.+|-.|+..|. | ....|.++|..|-. -.+|...||++|++-...-..|+-+
T Consensus 10 iL~CP~ck~~L~----~-~~~~g~LvC~~c~~-----------------------~YPI~dGIPvmL~~Ear~~~~~~~~ 61 (67)
T 2jny_A 10 VLACPKDKGPLR----Y-LESEQLLVNERLNL-----------------------AYRIDDGIPVLLIDEATEWTPNNLE 61 (67)
T ss_dssp CCBCTTTCCBCE----E-ETTTTEEEETTTTE-----------------------EEEEETTEECCCSSCCEECCCCCCC
T ss_pred HhCCCCCCCcCe----E-eCCCCEEEcCCCCc-----------------------cccCCCCEeeeChhHhcCCchhhhh
Confidence 456777777662 2 33467888877622 2467788998887633333334433
Q ss_pred C
Q 010559 332 K 332 (507)
Q Consensus 332 ~ 332 (507)
.
T Consensus 62 ~ 62 (67)
T 2jny_A 62 H 62 (67)
T ss_dssp -
T ss_pred h
Confidence 3
No 175
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=57.28 E-value=0.8 Score=37.82 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=21.0
Q ss_pred ccCCCCeeeeeccccccccccceeeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAIL 387 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il 387 (507)
-|.+||+|+.||+.++......++..+|
T Consensus 58 GL~~GD~I~~ing~~v~~~~~~~~~~~l 85 (104)
T 1wi2_A 58 GLQEGDQVLAVNDVDFQDIEHSKAVEIL 85 (104)
T ss_dssp TCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4789999999999998875555544443
No 176
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=56.79 E-value=1.7 Score=37.62 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=21.2
Q ss_pred ccCCCCeeeeeccccccccccceeeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAIL 387 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il 387 (507)
+|.+||+|++||++++......++..+|
T Consensus 83 ~L~~GD~Il~ing~~v~~~~~~~~~~~l 110 (131)
T 1wfg_A 83 HLRPGDEVLEWNGRLLQGATFEEVYNII 110 (131)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4889999999999999765555544443
No 177
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=56.28 E-value=0.93 Score=36.75 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=17.8
Q ss_pred cCCCCeeeeeccccccccccce
Q 010559 361 IGAGYRLIDMITEPYRLIRRCE 382 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~e 382 (507)
|.+||+|+.||+.++......+
T Consensus 49 l~~GD~I~~vng~~v~~~~~~~ 70 (98)
T 2opg_A 49 LWAGDQILEVNGIDLRKATHDE 70 (98)
T ss_dssp CCTTCEEEEETTEECTTCCHHH
T ss_pred CCCCCEEEEECCEECCCCCHHH
Confidence 8899999999999987654333
No 178
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=56.19 E-value=1.9 Score=35.83 Aligned_cols=29 Identities=10% Similarity=0.229 Sum_probs=22.0
Q ss_pred cccCCCCeeeeeccccccccccceeeeee
Q 010559 359 PRIGAGYRLIDMITEPYRLIRRCEVTAIL 387 (507)
Q Consensus 359 ~~~~~G~rilei~~~p~~~~~~~eV~~Il 387 (507)
.-|++||+|++|||.++......++..+|
T Consensus 51 aGL~~GD~Il~vng~~v~~~~~~~l~~~l 79 (94)
T 3kzd_A 51 KGLKAGDEILEINNRAADALNSSMLKDFL 79 (94)
T ss_dssp TTCCTTCEEEEETTEEGGGCCHHHHHHHH
T ss_pred cCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 34789999999999999876555554443
No 179
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=56.12 E-value=0.94 Score=36.88 Aligned_cols=23 Identities=4% Similarity=-0.064 Sum_probs=18.4
Q ss_pred cCCCCeeeeecccccccccccee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEV 383 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV 383 (507)
|.+||+|+.|||+++......++
T Consensus 50 L~~GD~I~~Ing~~v~~~~~~~~ 72 (96)
T 2qkv_A 50 LQRGDIITKFNGDALEGLPFQVS 72 (96)
T ss_dssp CCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHH
Confidence 88999999999999976544443
No 180
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=56.07 E-value=0.91 Score=39.19 Aligned_cols=30 Identities=10% Similarity=0.074 Sum_probs=22.4
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILIL 389 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l 389 (507)
.|++||+|++|||+++......++..+|..
T Consensus 61 ~L~~GD~Il~vng~~v~~~~~~~~~~~l~~ 90 (129)
T 2kpk_A 61 KMETGDVIVSVNDTCVLGHTHAQVVKIFQS 90 (129)
T ss_dssp SCCTTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 388999999999999986655555554443
No 181
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=55.99 E-value=1 Score=37.19 Aligned_cols=35 Identities=9% Similarity=0.015 Sum_probs=24.4
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPR 394 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~ 394 (507)
-|.+||+|++||++++......++..+|...|-+.
T Consensus 60 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v 94 (107)
T 3qe1_A 60 GVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKEL 94 (107)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHHHCSSEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence 37899999999999998665555555444334333
No 182
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=55.81 E-value=0.97 Score=37.95 Aligned_cols=24 Identities=8% Similarity=0.267 Sum_probs=18.7
Q ss_pred cCCCCeeeeeccccccccccceee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVT 384 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~ 384 (507)
|.+||+|++|||.++......++.
T Consensus 68 L~~GD~Il~Vng~~v~~~~~~~~~ 91 (112)
T 2r4h_A 68 MRIGDEILEINGETTKNMKHSRAI 91 (112)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHH
Confidence 789999999999998765444433
No 183
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=55.79 E-value=0.94 Score=35.93 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=20.2
Q ss_pred ccCCCCeeeeeccccccccccceeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
.|.+||+|+.||++++......++..+
T Consensus 43 GL~~GD~I~~ing~~v~~~~~~~~~~~ 69 (87)
T 2pa1_A 43 DLRPGDIIVAINGESAEGMLHAEAQSK 69 (87)
T ss_dssp TCCTTCEEEEETTEESTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 478999999999999887544444443
No 184
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.32 E-value=0.81 Score=39.28 Aligned_cols=36 Identities=17% Similarity=0.054 Sum_probs=24.4
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRL 395 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~ 395 (507)
-|.+||+|++||++++......++..+|...|-+..
T Consensus 78 GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~ 113 (126)
T 2yuy_A 78 GLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLE 113 (126)
T ss_dssp TCCSSCCCCEETTEECSSCCHHHHHHHHHTCTTEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEE
Confidence 378999999999999975555555554443343333
No 185
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=54.92 E-value=1.1 Score=37.25 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=21.8
Q ss_pred ccCCCCeeeeeccccccccccceeeeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILI 388 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~ 388 (507)
-|.+||+|++|||.++....+.++..+|.
T Consensus 62 Gl~~GD~I~~vng~~v~~~~~~~~~~~l~ 90 (109)
T 1q3o_A 62 GLRMGDFLIEVNGQNVVKVGHRQVVNMIR 90 (109)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 47899999999999998765555544443
No 186
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=54.81 E-value=1.1 Score=37.03 Aligned_cols=27 Identities=7% Similarity=0.032 Sum_probs=20.3
Q ss_pred ccCCCCeeeeeccccccccccceeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
.|.+||+|++||+.++......++..+
T Consensus 59 gL~~GD~Il~vng~~v~~~~~~~~~~~ 85 (107)
T 1uhp_A 59 GLQIHDRIIEVNGRDLSRATHDQAVEA 85 (107)
T ss_dssp CCCSSCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 588999999999999976554443333
No 187
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=54.76 E-value=1 Score=38.42 Aligned_cols=29 Identities=7% Similarity=0.049 Sum_probs=21.6
Q ss_pred ccCCCCeeeeeccccccccccceeeeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILI 388 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~ 388 (507)
.|++||+|++||++++......++..+|.
T Consensus 62 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 90 (123)
T 1ueq_A 62 KMETGDVIVYINEVCVLGHTHADVVKLFQ 90 (123)
T ss_dssp CCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 38899999999999987655555544443
No 188
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.71 E-value=1 Score=36.42 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=17.1
Q ss_pred ccCCCCeeeeeccccccccc
Q 010559 360 RIGAGYRLIDMITEPYRLIR 379 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~ 379 (507)
-|.+||+|+.||++++....
T Consensus 49 Gl~~GD~I~~ing~~v~~~~ 68 (94)
T 2eeg_A 49 ALCPGDLIQAINGESTELMT 68 (94)
T ss_dssp TCCTTCEEEEETTEETTTCC
T ss_pred CCCCCCEEEEECCEECCCCC
Confidence 47899999999999987653
No 189
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=54.66 E-value=1.2 Score=38.21 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=21.5
Q ss_pred cCCCCeeeeeccccccccccceeeeeee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAILI 388 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~Il~ 388 (507)
|.+||+|++|||+++......++..+|.
T Consensus 78 L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 105 (123)
T 2iwq_A 78 LKPGDRIVEVDGMDLRDASHEQAVEAIR 105 (123)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 8899999999999998755555554443
No 190
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=54.64 E-value=5.1 Score=32.49 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=17.3
Q ss_pred CCCChhHHHHHHHhhhhhhhc
Q 010559 38 SGFDNEEIDRAIALSLVEVDQ 58 (507)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~ 58 (507)
.+.|++||..|||.||.|-..
T Consensus 51 ~edeD~DLKAAIaASLrd~E~ 71 (81)
T 1q0v_A 51 EEEEDPDLKAAIQESLREAEE 71 (81)
T ss_dssp CCCSCHHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHH
Confidence 467789999999999976543
No 191
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=54.23 E-value=1.1 Score=35.96 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=18.2
Q ss_pred cCCCCeeeeecccccccccccee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEV 383 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV 383 (507)
|.+||+|+.||++++......++
T Consensus 52 l~~GD~I~~vng~~v~~~~~~~~ 74 (94)
T 2fe5_A 52 LQIGDRLLAVNNTNLQDVRHEEA 74 (94)
T ss_dssp CCTTCEEEEETTEECTTCBHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHH
Confidence 88999999999999876544333
No 192
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=53.98 E-value=0.91 Score=39.17 Aligned_cols=29 Identities=21% Similarity=0.096 Sum_probs=21.6
Q ss_pred ccCCCCeeeeeccccccccccceeeeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILI 388 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~ 388 (507)
+|++||+|+.||+.++....+.++..+|.
T Consensus 73 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 101 (127)
T 1wg6_A 73 RLRMNDQLIAVNGETLLGKSNHEAMETLR 101 (127)
T ss_dssp TSCSCCBEEEETTEESTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 48899999999999988766555444433
No 193
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=53.77 E-value=1.1 Score=38.54 Aligned_cols=31 Identities=10% Similarity=0.048 Sum_probs=22.9
Q ss_pred cCCCCeeeeeccccccccccceeeeeeeecC
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAILILYG 391 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~g 391 (507)
|++||+|++|||.++......++..+|...|
T Consensus 84 L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~ 114 (128)
T 1nf3_C 84 LAVNDEVLEVNGIEVSGKSLDQVTDMMIANS 114 (128)
T ss_dssp CCTTCEEEEETTEESTTCCHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 7899999999999997666656555544333
No 194
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=53.67 E-value=0.89 Score=38.07 Aligned_cols=27 Identities=7% Similarity=0.032 Sum_probs=20.3
Q ss_pred ccCCCCeeeeeccccccccccceeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
.|.+||+|++|||+++......++..+
T Consensus 43 ~L~~GD~Il~Ing~~v~~~~~~~~~~~ 69 (106)
T 2la8_A 43 KLQRGDIITKFNGDALEGLPFQVCYAL 69 (106)
T ss_dssp TCCTTCEEEEESSCBCSSSCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 378999999999999986554443333
No 195
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=53.46 E-value=0.81 Score=37.89 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=18.2
Q ss_pred cCCCCeeeeecccccccccccee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEV 383 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV 383 (507)
|.+||+|+.||+.++......++
T Consensus 63 l~~GD~I~~vng~~v~~~~~~~~ 85 (108)
T 2jre_A 63 IEPNDKILRVDDVNVQGMAQSDV 85 (108)
T ss_dssp CCSSEEEEEETTEECTTSCHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHH
Confidence 88999999999999876443333
No 196
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=53.43 E-value=1.3 Score=37.89 Aligned_cols=26 Identities=8% Similarity=0.227 Sum_probs=19.9
Q ss_pred ccCCCCeeeeeccccccccccceeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTA 385 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~ 385 (507)
.|.+||+|++|||.++......++..
T Consensus 71 gL~~GD~Il~VnG~~v~~~~~~~~~~ 96 (120)
T 2iwo_A 71 KLRVGDRIVTICGTSTEGMTHTQAVN 96 (120)
T ss_dssp CCCTTCEEEEETTEECTTCBHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHH
Confidence 67899999999999998654444333
No 197
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.19 E-value=6.6 Score=29.72 Aligned_cols=45 Identities=16% Similarity=0.349 Sum_probs=26.1
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc-----CccccccCCccccC
Q 010559 181 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH-----HPKCDVCQNFIPTN 226 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f-----~pkC~~C~~~I~~~ 226 (507)
+.|..|...+..... ..=|..||..|....+ ...|..|...|...
T Consensus 21 ~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 21 VICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CBCTTTCSBCSSEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CEeccCCcccCCeEE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 455555554443222 2346677877765544 34788888887654
No 198
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=53.04 E-value=1.1 Score=41.22 Aligned_cols=37 Identities=5% Similarity=-0.089 Sum_probs=25.9
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
.|.+||+|++||++++......++..+|...+-+..|
T Consensus 154 ~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L 190 (206)
T 3r0h_A 154 KLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSM 190 (206)
T ss_dssp HCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 3899999999999999876555555554444444433
No 199
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=52.93 E-value=1.1 Score=35.94 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=16.9
Q ss_pred cCCCCeeeeecccccccccc
Q 010559 361 IGAGYRLIDMITEPYRLIRR 380 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~ 380 (507)
|.+||+|+.||+.++.....
T Consensus 52 l~~GD~I~~vng~~v~~~~~ 71 (97)
T 2iwn_A 52 IQIGDQIIAVDGTNLQGFTN 71 (97)
T ss_dssp CCTTCEEEEETTEECTTSCH
T ss_pred CCCCCEEEEECCEECCCCCH
Confidence 88999999999999875443
No 200
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=52.92 E-value=1.6 Score=35.00 Aligned_cols=29 Identities=3% Similarity=0.039 Sum_probs=21.9
Q ss_pred ccCCCCeeeeeccccccccccceeeeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILI 388 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~ 388 (507)
-|.+||+|+.|||+++....+.++..+|.
T Consensus 46 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~ 74 (95)
T 3r68_A 46 GLKNNDLVVAVNGKSVEALDHDGVVEMIR 74 (95)
T ss_dssp TCCTTEEEEEETTEECTTCCHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 37899999999999998765555544443
No 201
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.86 E-value=1.4 Score=35.61 Aligned_cols=33 Identities=9% Similarity=-0.020 Sum_probs=23.0
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCch
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLP 393 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP 393 (507)
.|.+||+|+.||++++ .....++..+|...|-+
T Consensus 47 ~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~ 79 (91)
T 2e7k_A 47 LLHVGDIIKEVNGQPV-GSDPRALQELLRNASGS 79 (91)
T ss_dssp CCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSS
T ss_pred CCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCe
Confidence 4789999999999999 55555555554433433
No 202
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=52.78 E-value=1.2 Score=36.61 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=26.1
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
-|.+||+|+.|||.++......++..+|...|-+..|
T Consensus 43 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 79 (106)
T 3ngh_A 43 GLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL 79 (106)
T ss_dssp TCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEE
Confidence 4789999999999999876655555554444544444
No 203
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.03 E-value=0.97 Score=37.25 Aligned_cols=26 Identities=23% Similarity=0.105 Sum_probs=19.5
Q ss_pred ccCCCCeeeeeccccccccccceeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTA 385 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~ 385 (507)
-|.+||+|++||++++......++..
T Consensus 49 Gl~~GD~I~~vng~~v~~~~~~~~~~ 74 (106)
T 2eei_A 49 GVLADDHLIEVNGENVEDASHEEVVE 74 (106)
T ss_dssp TCCSSEEEEEETTEECTTCCHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHH
Confidence 47899999999999997554444433
No 204
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.85 E-value=1.3 Score=36.30 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=16.8
Q ss_pred ccCCCCeeeeecccccccc
Q 010559 360 RIGAGYRLIDMITEPYRLI 378 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~ 378 (507)
.|.+||+|++||++++...
T Consensus 53 GL~~GD~I~~ing~~v~~~ 71 (100)
T 2edp_A 53 KMRTGDELVNINGTPLYGS 71 (100)
T ss_dssp SCCTTCEEEEETTEECCSC
T ss_pred CCCCCCEEEEECCEEccch
Confidence 5789999999999998764
No 205
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=51.74 E-value=1.3 Score=35.48 Aligned_cols=24 Identities=8% Similarity=0.115 Sum_probs=18.3
Q ss_pred ccCCCCeeeeecccccccccccee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEV 383 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV 383 (507)
-|.+||+|++|||.++......++
T Consensus 41 Gl~~GD~I~~vng~~v~~~~~~~~ 64 (91)
T 2f5y_A 41 GLQQLDTVLQLNERPVEHWKCVEL 64 (91)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 378999999999999875433333
No 206
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=51.65 E-value=1.8 Score=37.66 Aligned_cols=37 Identities=16% Similarity=-0.010 Sum_probs=25.6
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeee--cCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILIL--YGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l--~glP~~L 396 (507)
.|.+||+|+.|||+++......++..+|.. .|-+..|
T Consensus 67 ~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l 105 (126)
T 1wif_A 67 ILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQI 105 (126)
T ss_dssp SSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEE
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEE
Confidence 378999999999999975445555555443 2555555
No 207
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.37 E-value=6.9 Score=29.79 Aligned_cols=46 Identities=15% Similarity=0.374 Sum_probs=28.2
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--CccccccCCccccC
Q 010559 181 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPTN 226 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f--~pkC~~C~~~I~~~ 226 (507)
+.|..|...+.+......=|..||..|..+.+ ...|..|...|...
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 45566655554422222446778888865433 56799998888764
No 208
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=51.36 E-value=1.5 Score=35.81 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=20.7
Q ss_pred cCCCCeeeeeccccccccccceeeeee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAIL 387 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~Il 387 (507)
|.+||+|++|||.++......++..+|
T Consensus 58 l~~GD~I~~ing~~v~~~~~~~~~~~l 84 (103)
T 2fcf_A 58 LKPGDRIVEVDGMDLRDASHEQAVEAI 84 (103)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 789999999999999775555544443
No 209
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=51.12 E-value=3.6 Score=45.10 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=29.4
Q ss_pred hhhhcchhhHHHHhc-CCCC-CCCcchhhHHHHHHHHHhhc
Q 010559 399 SILAHEMMHAWLRLK-GYPN-LRPDVEEGICQVLAHMWLES 437 (507)
Q Consensus 399 silaHE~~Hawl~~~-g~~~-L~~~~eEG~cq~~a~~wl~~ 437 (507)
.+||||+.|-|..-. .... -...+-|||...++++|++.
T Consensus 297 ~viaHElAHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~ 337 (632)
T 2xq0_A 297 DVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGA 337 (632)
T ss_dssp HHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccCCcchhhHHHHHHHHHHHHHHHH
Confidence 599999999996531 1111 13478999999999999985
No 210
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=51.07 E-value=1.4 Score=35.83 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=23.0
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCch
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLP 393 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP 393 (507)
-|.+||+|+.||+.++......++..+|...|-+
T Consensus 51 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~ 84 (99)
T 3khf_A 51 GLRAGDLITHINGESVLGLVHMDVVELLLKSGNK 84 (99)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCE
Confidence 3789999999999999855544444443333333
No 211
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=50.88 E-value=1.2 Score=35.66 Aligned_cols=20 Identities=10% Similarity=0.028 Sum_probs=17.2
Q ss_pred ccCCCCeeeeeccccccccc
Q 010559 360 RIGAGYRLIDMITEPYRLIR 379 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~ 379 (507)
-|.+||.|++|||.++....
T Consensus 44 Gl~~GD~I~~ing~~v~~~~ 63 (91)
T 2pkt_A 44 NLCIGDVITAIDGENTSNMT 63 (91)
T ss_dssp TCCTTCEEEEETTEECTTCC
T ss_pred CCCCCCEEEEECCEECCCCC
Confidence 47899999999999987655
No 212
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=50.87 E-value=1.4 Score=37.64 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=21.3
Q ss_pred ccCCCCeeeeeccccccccccceeeeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILI 388 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~ 388 (507)
-|.+||+|+.||+.++....+.++..+|.
T Consensus 63 GL~~GD~Il~Vng~~v~~~~~~dl~~~l~ 91 (118)
T 2yub_A 63 AIHPGDRILEINGTPVRTLRVEEVEDAIK 91 (118)
T ss_dssp HCCTTCCEEEESSSBTTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCcCHHHHHHHHH
Confidence 47899999999999998764444444433
No 213
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=50.71 E-value=2.4 Score=33.74 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=18.7
Q ss_pred ccCCCCeeeeecccccccccccee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEV 383 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV 383 (507)
-|.+||+|++|||+++......++
T Consensus 44 GL~~GD~I~~ing~~v~~~~~~~~ 67 (91)
T 1g9o_A 44 GLLAGDRLVEVNGENVEKETHQQV 67 (91)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 378999999999999876544443
No 214
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=50.63 E-value=1.3 Score=37.86 Aligned_cols=27 Identities=30% Similarity=0.287 Sum_probs=20.1
Q ss_pred cCCCCeeeeeccccccccccceeeeee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAIL 387 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~Il 387 (507)
|.+||+|++|||+++......++..+|
T Consensus 77 L~~GD~Il~Ing~~v~~~~~~~~~~~l 103 (121)
T 2kom_A 77 LKAGDRLIEVNGVDLVGKSQEEVVSLL 103 (121)
T ss_dssp CCSSSEEEEETTEECTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCEEcCCCCHHHHHHHH
Confidence 789999999999998765444444433
No 215
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=50.01 E-value=1.6 Score=37.07 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=19.9
Q ss_pred ccCCCCeeeeeccccccccccceeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
.|.+||+|++|||.++......++..+
T Consensus 71 ~L~~GD~Il~Vng~~v~~~~~~~~~~~ 97 (117)
T 2fne_A 71 RLKRGDQIIAVNGQSLEGVTHEEAVAI 97 (117)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 388999999999999885444444333
No 216
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=49.97 E-value=1.3 Score=38.20 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=26.0
Q ss_pred ccCCCCeeeeeccccccccccceeeeeee--ecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILI--LYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~--l~glP~~L 396 (507)
-|.+||+|+.||++++......++..+|. ..|.+..|
T Consensus 68 GL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l 106 (124)
T 3tsv_A 68 GLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTI 106 (124)
T ss_dssp TCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEE
Confidence 47899999999999998765555555444 24555555
No 217
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=49.36 E-value=1.5 Score=37.57 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=20.4
Q ss_pred cCCCCeeeeeccccccccccceeeeee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAIL 387 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~Il 387 (507)
|.+||+|++||+.++......++..+|
T Consensus 65 L~~GD~I~~vng~~v~~~~~~~~~~~l 91 (129)
T 2dmz_A 65 IQVNDKIVAVDGVNIQGFANHDVVEVL 91 (129)
T ss_dssp CCSSCBEEEETTBCCTTCCHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 889999999999998875444444433
No 218
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=49.31 E-value=17 Score=26.39 Aligned_cols=44 Identities=18% Similarity=0.447 Sum_probs=25.4
Q ss_pred cccCCCCCCCCCcceeecCCccccccccccccCccccccCCccccC
Q 010559 181 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTN 226 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~C~~~I~~~ 226 (507)
+.|..|...+.... ...=|..||..|... ....|..|...+...
T Consensus 7 ~~C~IC~~~~~~p~-~l~CgH~fC~~Ci~~-~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 7 LRCQQCQAEAKCPK-LLPCLHTLCSGCLEA-SGMQCPICQAPWPLG 50 (56)
T ss_dssp SSCSSSCSSCBCCS-CSTTSCCSBTTTCSS-SSSSCSSCCSSSSCC
T ss_pred CCceEeCCccCCeE-EcCCCCcccHHHHcc-CCCCCCcCCcEeecC
Confidence 44555555444322 123456677777654 456788888877653
No 219
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.00 E-value=3 Score=35.46 Aligned_cols=26 Identities=8% Similarity=0.199 Sum_probs=19.8
Q ss_pred ccCCCCeeeeeccccccccccceeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTA 385 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~ 385 (507)
-|.+||+|++||+.+++.....++..
T Consensus 61 GL~~GD~Il~Ing~~v~~~~~~~~~~ 86 (114)
T 2d8i_A 61 GLKAGDEILEINNRAADALNSSMLKD 86 (114)
T ss_dssp TCCTTCCEEEESSCBGGGCCHHHHHH
T ss_pred CCCCCCEEEEECCEECCCcCHHHHHH
Confidence 47899999999999998754444433
No 220
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=48.85 E-value=1.3 Score=36.31 Aligned_cols=20 Identities=5% Similarity=0.024 Sum_probs=17.0
Q ss_pred ccCCCCeeeeeccccccccc
Q 010559 360 RIGAGYRLIDMITEPYRLIR 379 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~ 379 (507)
-|.+||+|+.||+.++....
T Consensus 46 GL~~GD~I~~ing~~v~~~~ 65 (103)
T 1wf7_A 46 HVRIGDVVLSIDGISAQGMT 65 (103)
T ss_dssp TCCTTCBEEEETTEECSSCC
T ss_pred CCCCCCEEEEECCEECCCCC
Confidence 47899999999999987653
No 221
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=48.64 E-value=1.7 Score=35.49 Aligned_cols=25 Identities=4% Similarity=0.007 Sum_probs=19.1
Q ss_pred ccCCCCeeeeeccccccccccceee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVT 384 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~ 384 (507)
-|.+||.|+.||++++......++.
T Consensus 47 Gl~~GD~I~~ing~~v~~~~~~~~~ 71 (102)
T 2d90_A 47 GLKNNDLVVAVNGKSVEALDHDGVV 71 (102)
T ss_dssp TCCTTCEEEEESSCBCTTSCHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHH
Confidence 3789999999999999865433433
No 222
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=48.57 E-value=2.9 Score=35.15 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=21.5
Q ss_pred ccCCCCeeeeeccccccccccceeeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAIL 387 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il 387 (507)
.|.+||+|++|||.++......++..+|
T Consensus 60 GL~~GD~Il~ing~~v~~~~~~~~~~~~ 87 (119)
T 2cs5_A 60 RLNEGDQVVLINGRDIAEHTHDQVVLFI 87 (119)
T ss_dssp CCCTTCEEEEETTBCTTSSCHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 6889999999999999866555544443
No 223
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=48.39 E-value=1.2 Score=37.93 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=19.5
Q ss_pred cCCCCeeeeeccccccccccceeeee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
|.+||+|+.||++++......++..+
T Consensus 64 L~~GD~I~~ing~~v~~~~~~~~~~~ 89 (122)
T 1v5q_A 64 LQIGDRVMAINGIPTEDSTFEEANQL 89 (122)
T ss_dssp CCTTCCEEEETTEESSSSCHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHH
Confidence 78999999999998876444444433
No 224
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=48.24 E-value=13 Score=31.38 Aligned_cols=44 Identities=18% Similarity=0.401 Sum_probs=31.3
Q ss_pred ccCCCCCCCCCcceeecCCcccccccccc---ccCccccccCCcccc
Q 010559 182 RCHSCNLPITDVEFSMSGNRPYHKHCYKE---QHHPKCDVCQNFIPT 225 (507)
Q Consensus 182 ~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~---~f~pkC~~C~~~I~~ 225 (507)
-|..|+.|+....-..-=+..||-.|+.. +-...|..|..+|..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 37778888775443333456889999854 445689999999875
No 225
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=47.98 E-value=2.8 Score=33.87 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=20.2
Q ss_pred ccCCCCeeeeeccccccccccceeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
-|.+||+|++|||.++......++..+
T Consensus 50 Gl~~GD~I~~ing~~v~~~~~~~~~~~ 76 (98)
T 2jxo_A 50 GLRAQDRIVEVNGVCMEGKQHGDVVSA 76 (98)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 378999999999999877544444443
No 226
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=47.32 E-value=4 Score=42.03 Aligned_cols=37 Identities=11% Similarity=0.034 Sum_probs=0.0
Q ss_pred ccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
.|.+||+|++|||+++......++..+|...+-...|
T Consensus 332 GL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L 368 (388)
T 3suz_A 332 GVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHM 368 (388)
T ss_dssp -------------------------------------
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence 4889999999999999887778888887776655555
No 227
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=47.17 E-value=1.7 Score=36.51 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=18.6
Q ss_pred CCCCeeeeeccccccccccceeeee
Q 010559 362 GAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 362 ~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
.+||+|++|||+++......++..+
T Consensus 68 ~~GD~I~~vng~~v~~~~~~~~~~~ 92 (113)
T 1va8_A 68 HEGDEVLEINGIEIRGKDVNEVFDL 92 (113)
T ss_dssp CTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCEEEEECCEECCCCCHHHHHHH
Confidence 8999999999999985444444333
No 228
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=46.69 E-value=2 Score=42.22 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=30.4
Q ss_pred cccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 359 PRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 359 ~~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
..|.+||+|++|||.++......++..+|...|-+..|
T Consensus 120 aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~L 157 (263)
T 1z87_A 120 EALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVL 157 (263)
T ss_dssp TTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCCE
T ss_pred CCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEE
Confidence 36789999999999999988777777776666666555
No 229
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=46.27 E-value=2.6 Score=35.42 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=18.0
Q ss_pred ccCCCCeeeeeccccccccccce
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCE 382 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~e 382 (507)
+|.+||+|++|||.++......+
T Consensus 60 ~L~~GD~Il~ing~~v~~~~~~~ 82 (119)
T 1x6d_A 60 TIQKGNEVLSINGKSLKGTTHHD 82 (119)
T ss_dssp SSCTTCBCCEETTEECSSCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 38899999999999887544433
No 230
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=45.90 E-value=1.6 Score=34.67 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=16.2
Q ss_pred cCCCCeeeeeccccccccc
Q 010559 361 IGAGYRLIDMITEPYRLIR 379 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~ 379 (507)
|.+||+|+.|||.++....
T Consensus 42 l~~GD~I~~ing~~v~~~~ 60 (92)
T 3cyy_A 42 IQEGDVVLKINGTVTENMS 60 (92)
T ss_dssp CCTTCEEEEETTEECTTCC
T ss_pred CCCCCEEEEECCEECCCCC
Confidence 7899999999999987333
No 231
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=45.86 E-value=10 Score=29.18 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=31.7
Q ss_pred CCccCCCCCcCCCCCceEEccCCceecccccccccCCCCCCccccHHH
Q 010559 252 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 299 (507)
Q Consensus 252 CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~~~I 299 (507)
-+.|..|...+........+.=|..||..|..+.+.....|--|..+|
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCcc
Confidence 466777777665445555556778888888876655556676776544
No 232
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=45.83 E-value=1.6 Score=40.14 Aligned_cols=35 Identities=9% Similarity=0.052 Sum_probs=25.3
Q ss_pred cCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
|++||+|++|||.++......++..+|.- |-+..|
T Consensus 128 L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~v~l 162 (192)
T 3k1r_A 128 LQVGDEIVRINGYSISSCTHEEVINLIRT-EKTVSI 162 (192)
T ss_dssp CCTTEEEEEETTEECTTCCHHHHHHHHTS-SSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHcC-CCeEEE
Confidence 78999999999999987666665554444 544444
No 233
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=45.14 E-value=11 Score=28.87 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=31.0
Q ss_pred cCCcccCCCCCCCCCcceeecCCcccccccccccc---CccccccCCcccc
Q 010559 178 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPT 225 (507)
Q Consensus 178 p~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f---~pkC~~C~~~I~~ 225 (507)
+.-|.|..|...+.+- ....-|..||..|..+.+ ...|..|+..+..
T Consensus 6 ~~~~~C~IC~~~~~~P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSE-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCC-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 3457788887777653 334568888988865533 3467777777654
No 234
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=44.95 E-value=1.9 Score=36.28 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=16.8
Q ss_pred ccCCCCeeeeeccccccccc
Q 010559 360 RIGAGYRLIDMITEPYRLIR 379 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~ 379 (507)
-|.+||+|++||+.++....
T Consensus 59 GL~~GD~Il~vng~~v~~~~ 78 (117)
T 1uit_A 59 GLEYGDQLLEFNGINLRSAT 78 (117)
T ss_dssp TCCTTCEECEETTEETTTCC
T ss_pred CCCCCCEEEEECCEECCCCC
Confidence 37899999999999987654
No 235
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=44.80 E-value=3.3 Score=32.70 Aligned_cols=27 Identities=7% Similarity=0.224 Sum_probs=20.1
Q ss_pred ccCCCCeeeeeccccccccccceeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
.|.+||+|+.|||.++......++..+
T Consensus 42 Gl~~GD~I~~vng~~v~~~~~~~~~~~ 68 (88)
T 3bpu_A 42 GLKEGDLIVEVNKKNVQALTHNQVVDM 68 (88)
T ss_dssp TCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHH
Confidence 578999999999999876544444333
No 236
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=44.79 E-value=1.9 Score=35.80 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=16.9
Q ss_pred ccCCCCeeeeeccccccccc
Q 010559 360 RIGAGYRLIDMITEPYRLIR 379 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~ 379 (507)
-|.+||+|+.||+.++....
T Consensus 63 GL~~GD~I~~ing~~v~~~~ 82 (110)
T 1x5q_A 63 GVRVGDKLLEVNGVALQGAE 82 (110)
T ss_dssp TCCTTCEEEEETTEECTTCC
T ss_pred CCCCCCEEEEECCEECCCcC
Confidence 37899999999999987643
No 237
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.46 E-value=7.5 Score=29.01 Aligned_cols=45 Identities=22% Similarity=0.617 Sum_probs=27.3
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc---CccccccCCccccC
Q 010559 181 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 226 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f---~pkC~~C~~~I~~~ 226 (507)
+.|..|...+..... ..=|..||..|..+.+ ...|..|+..|...
T Consensus 16 ~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp EECTTTCCEESSCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 455555554443222 2446778888876544 35788888887654
No 238
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=44.35 E-value=5.4 Score=43.48 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=28.2
Q ss_pred hhhhcchhhHHHHhc-CCCCC-CCcchhhHHHHHHHHHhhc
Q 010559 399 SILAHEMMHAWLRLK-GYPNL-RPDVEEGICQVLAHMWLES 437 (507)
Q Consensus 399 silaHE~~Hawl~~~-g~~~L-~~~~eEG~cq~~a~~wl~~ 437 (507)
.+||||++|-|..-- ....- ...+-|||...++++|++.
T Consensus 289 ~viaHElAHqWfGnlVT~~~W~d~WLnEGfAty~e~~~~~~ 329 (608)
T 3u9w_A 289 NVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGR 329 (608)
T ss_dssp HHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhcCcCccccccchhHHHhHHHHHHHHHHHH
Confidence 489999999996431 11111 2377899999999998763
No 239
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=43.88 E-value=3.6 Score=31.53 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=17.7
Q ss_pred cCCCCeeeeecccccccccccee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEV 383 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV 383 (507)
|.+||+|+.||+.++......++
T Consensus 40 l~~GD~I~~ing~~v~~~~~~~~ 62 (81)
T 2rcz_A 40 IQEGDVVLKINGTVTENMSLTDA 62 (81)
T ss_dssp CCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHH
Confidence 78999999999999874433333
No 240
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.52 E-value=1.9 Score=35.13 Aligned_cols=21 Identities=5% Similarity=0.041 Sum_probs=17.4
Q ss_pred ccCCCCeeeeecccccccccc
Q 010559 360 RIGAGYRLIDMITEPYRLIRR 380 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~ 380 (507)
-|.+||+|++||+.++.....
T Consensus 53 GL~~GD~I~~ing~~v~~~~~ 73 (100)
T 2eeh_A 53 GLCVGDKITEVNGLSLESTTM 73 (100)
T ss_dssp TCCSSCEEEEETTEECSSCCH
T ss_pred CCCCCCEEEEECCEECCCCCH
Confidence 378999999999999876543
No 241
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=43.42 E-value=1.7 Score=35.66 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=21.2
Q ss_pred ccCCCCeeeeeccccccccccceeeeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAILI 388 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~Il~ 388 (507)
-|.+||+|+.||++++......++..+|.
T Consensus 65 Gl~~GD~I~~vng~~v~~~~~~~~~~~l~ 93 (104)
T 2z17_A 65 GLQAGDVLANINGVSTEGFTYKQVVDLIR 93 (104)
T ss_dssp TCCTTCBCCEETTEECTTCCHHHHHHHHH
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHHH
Confidence 37899999999999987555555544443
No 242
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=43.11 E-value=3.6 Score=33.54 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=17.8
Q ss_pred ccCCCCeeeeeccccccccccce
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCE 382 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~e 382 (507)
-|.+||+|++||+.++......+
T Consensus 53 GL~~GD~I~~vng~~v~~~~~~~ 75 (100)
T 1whd_A 53 GLQQLDTVLQLNERPVEHWKCVE 75 (100)
T ss_dssp TCCSSCEEEEETTEECTTCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 47899999999999987543333
No 243
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=42.41 E-value=2.1 Score=34.40 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=16.9
Q ss_pred ccCCCCeeeeeccccccccc
Q 010559 360 RIGAGYRLIDMITEPYRLIR 379 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~ 379 (507)
-|.+||+|+.||++++....
T Consensus 46 GL~~GD~I~~ing~~v~~~~ 65 (93)
T 2dls_A 46 GVKEGDRIIKVNGTMVTNSS 65 (93)
T ss_dssp TCCSSCEEEEETTEECSSSC
T ss_pred CCCCCCEEEEECCEECCCCC
Confidence 47899999999999987654
No 244
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=42.27 E-value=3.6 Score=34.97 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=16.8
Q ss_pred ccCCCCeeeeeccccccccc
Q 010559 360 RIGAGYRLIDMITEPYRLIR 379 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~ 379 (507)
+|.+||+|+.|||.++....
T Consensus 63 ~L~~GD~Il~ing~~v~~~~ 82 (125)
T 3hpk_A 63 TVAAGDEITGVNGRSIKGKT 82 (125)
T ss_dssp CCCTTCEEEEETTEECTTCC
T ss_pred CCCCCCEEEEECCEECCCCC
Confidence 38899999999999987443
No 245
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.94 E-value=14 Score=28.47 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=25.1
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--------CccccccCCccccC
Q 010559 181 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--------HPKCDVCQNFIPTN 226 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f--------~pkC~~C~~~I~~~ 226 (507)
+.|..|...+..... ..=|..||..|....+ ...|..|...+...
T Consensus 20 ~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 20 VTCPICLELLTQPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCTTTCSCCSSCBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCcccCCcee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 455555554443222 2346677777765432 45788888777653
No 246
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=40.91 E-value=2.4 Score=38.82 Aligned_cols=36 Identities=25% Similarity=0.191 Sum_probs=24.4
Q ss_pred cCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
|.+||+|++||+.++......++..+|...|-+..|
T Consensus 154 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l 189 (200)
T 2qt5_A 154 IKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATL 189 (200)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 889999999999999855555555444333444333
No 247
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=40.63 E-value=20 Score=25.31 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=27.3
Q ss_pred CccCCCCCcCCCCCceEEcc-CCceecccccccccCCCCCCccccH
Q 010559 253 PRCCSCERMEPRDTKYLSLD-DGRKLCLECLDSAIMDTHECQPLYL 297 (507)
Q Consensus 253 F~C~~C~~~l~~g~~y~~l~-dGr~~C~~C~~~~v~~t~~C~~c~~ 297 (507)
..|..|-..+..+.....+. =|..||..|..+-+.....|--|..
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~ 51 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRL 51 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCC
Confidence 45667766665444444443 5777888887765554555655553
No 248
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=40.27 E-value=4.3 Score=34.13 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=18.5
Q ss_pred ccCCCCeeeeeccccccccccceee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVT 384 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~ 384 (507)
-|.+||+|+.|||+++......++.
T Consensus 53 GL~~GD~Il~InG~~v~~~~~~d~~ 77 (111)
T 1vae_A 53 GAKEGDYIVSIQGVDCKWLTVSEVM 77 (111)
T ss_dssp HCCTTCEEEEETTEECSSCCHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHH
Confidence 4779999999999998743333433
No 249
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=40.19 E-value=2.8 Score=38.44 Aligned_cols=33 Identities=12% Similarity=0.008 Sum_probs=23.6
Q ss_pred cCCCCeeeeeccccccccccceeeeeeeecCch
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLP 393 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP 393 (507)
|.+||+|++||++++......++..+|...|-+
T Consensus 154 l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~ 186 (196)
T 1p1d_A 154 LELGDKLLAIDNIRLDSCSMEDAVQILQQCEDL 186 (196)
T ss_dssp CCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCE
Confidence 889999999999999875555555544333333
No 250
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=39.73 E-value=9.3 Score=30.93 Aligned_cols=45 Identities=16% Similarity=0.332 Sum_probs=24.2
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--CccccccCCcccc
Q 010559 181 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPT 225 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f--~pkC~~C~~~I~~ 225 (507)
+.|..|...+........-|..||..|....+ ...|..|+..+..
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 44555555444322221346667777764432 3567777777654
No 251
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=39.70 E-value=2.4 Score=34.11 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=16.8
Q ss_pred ccCCCCeeeeeccccccccc
Q 010559 360 RIGAGYRLIDMITEPYRLIR 379 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~ 379 (507)
-|.+||+|+.||++++....
T Consensus 51 Gl~~GD~I~~ing~~v~~~~ 70 (97)
T 2w4f_A 51 GVRVGDKLLEVNGVALQGAE 70 (97)
T ss_dssp TCCTTCEEEEETTEECTTCC
T ss_pred CCCCCCEEEEECCEECCCcC
Confidence 37899999999999987643
No 252
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=39.61 E-value=10 Score=36.54 Aligned_cols=48 Identities=25% Similarity=0.787 Sum_probs=28.9
Q ss_pred CCCcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCcceeecCCcccccccccc---c-cCccccccCCccccC
Q 010559 152 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKE---Q-HHPKCDVCQNFIPTN 226 (507)
Q Consensus 152 g~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~---~-f~pkC~~C~~~I~~~ 226 (507)
....|..|+..|..| .+|..|+. .+|..|+.+ . -.++|..|+...+..
T Consensus 179 ~i~~C~iC~~iv~~g--------------~~C~~C~~-------------~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--------------QSCETCGI-------------RMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC--------------EECSSSCC-------------EECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC--------------cccCccCh-------------HHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 467899999988633 34554532 223333322 1 246888898887764
No 253
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=39.36 E-value=8.3 Score=43.32 Aligned_cols=41 Identities=15% Similarity=0.291 Sum_probs=29.9
Q ss_pred hhhhhhcchhhHHHHhc-CCCCC-CCcchhhHHHHHHHHHhhc
Q 010559 397 TGSILAHEMMHAWLRLK-GYPNL-RPDVEEGICQVLAHMWLES 437 (507)
Q Consensus 397 ~gsilaHE~~Hawl~~~-g~~~L-~~~~eEG~cq~~a~~wl~~ 437 (507)
...+||||+.|-|..-- ....- ...+-|||..+|++++++.
T Consensus 259 ~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfA~y~~~~~~~~ 301 (780)
T 1z5h_A 259 SANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDT 301 (780)
T ss_dssp HHHHHHHHHHHTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcccccccHHHHHHHHHHHHHH
Confidence 45799999999996421 11111 3478999999999998874
No 254
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=39.08 E-value=8.5 Score=44.00 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=31.1
Q ss_pred hhhhhhhcchhhHHHHhc-CCCC-CCCcchhhHHHHHHHHHhhcc
Q 010559 396 LTGSILAHEMMHAWLRLK-GYPN-LRPDVEEGICQVLAHMWLESE 438 (507)
Q Consensus 396 L~gsilaHE~~Hawl~~~-g~~~-L~~~~eEG~cq~~a~~wl~~~ 438 (507)
-...+||||++|-|..-- .... -...+-|||..+|+++|++..
T Consensus 301 ~~~~viaHElAHqWFGnlVT~~~W~dlWLnEGfAty~e~~~~~~~ 345 (897)
T 2xdt_A 301 GITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVT 345 (897)
T ss_dssp HHHHHHHHHHHTTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEeccCCcchhhhhHHHHHHHHHHHHHHh
Confidence 345699999999996521 1111 135889999999999998853
No 255
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=38.27 E-value=4.4 Score=34.17 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=19.6
Q ss_pred ccCCCCeeeeeccccccccccceeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
-|.+||+|+.|||+++......++..+
T Consensus 61 GL~~GD~Il~VnG~~v~~~~~~dv~~~ 87 (109)
T 2vsv_A 61 GAREGDYIVSIQLVDCKWLTLSEVMKL 87 (109)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 478999999999999885433344333
No 256
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=38.22 E-value=4.9 Score=32.68 Aligned_cols=27 Identities=4% Similarity=0.088 Sum_probs=20.3
Q ss_pred ccCCCCeeeeeccccccccccceeeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
-|.+||+|+.||+.++......++..+
T Consensus 62 Gl~~GD~I~~ing~~v~~~~~~~~~~~ 88 (104)
T 3sfj_A 62 GLQIGDKIMQVNGWDMTMVTHDQARKR 88 (104)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 478999999999999876554444433
No 257
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=38.00 E-value=15 Score=30.60 Aligned_cols=29 Identities=17% Similarity=0.472 Sum_probs=13.8
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccc
Q 010559 181 FRCHSCNLPITDVEFSMSGNRPYHKHCYKE 210 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~ 210 (507)
|.|..|...+.... ...=|..||..|...
T Consensus 16 ~~C~iC~~~~~~p~-~~~CgH~fC~~Ci~~ 44 (115)
T 3l11_A 16 CQCGICMEILVEPV-TLPCNHTLCKPCFQS 44 (115)
T ss_dssp HBCTTTCSBCSSCE-ECTTSCEECHHHHCC
T ss_pred CCCccCCcccCcee-EcCCCCHHhHHHHHH
Confidence 45555555443321 123355566666543
No 258
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=37.69 E-value=9.2 Score=43.75 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=29.8
Q ss_pred hhhhhhcchhhHHHHhc-CCCCC-CCcchhhHHHHHHHHHhhc
Q 010559 397 TGSILAHEMMHAWLRLK-GYPNL-RPDVEEGICQVLAHMWLES 437 (507)
Q Consensus 397 ~gsilaHE~~Hawl~~~-g~~~L-~~~~eEG~cq~~a~~wl~~ 437 (507)
...|||||++|-|..-- ....- ...+-|||+.+|+++|++.
T Consensus 316 ~~~viaHElAHqWFGnlVT~~~W~dlWLnEGFAty~e~~~~~~ 358 (909)
T 4fke_A 316 VVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADH 358 (909)
T ss_dssp HHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcCeecccccCcceeehHHHHHHHHHHHHh
Confidence 35689999999996421 11111 2378999999999999874
No 259
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=37.30 E-value=7.7 Score=32.48 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=10.9
Q ss_pred hhhhhhcchhhHH
Q 010559 397 TGSILAHEMMHAW 409 (507)
Q Consensus 397 ~gsilaHE~~Haw 409 (507)
..++||||+.|.-
T Consensus 83 l~aVlaHElgH~~ 95 (107)
T 3cqb_A 83 AEAVLAHEVSHIA 95 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3789999999964
No 260
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=37.08 E-value=17 Score=27.79 Aligned_cols=44 Identities=18% Similarity=0.418 Sum_probs=25.0
Q ss_pred cccCCCCCCCCCcceeec-CCccccccccccccC----ccccccCCcccc
Q 010559 181 FRCHSCNLPITDVEFSMS-GNRPYHKHCYKEQHH----PKCDVCQNFIPT 225 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~-~gk~yCk~CY~~~f~----pkC~~C~~~I~~ 225 (507)
+.|..|...+.... ... =|..||..|....+. ..|..|...+..
T Consensus 16 ~~C~IC~~~~~~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 16 LLCLICKDIMTDAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GSCSSSCCCCTTCE-ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCcCCChHHhCCe-EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 45555555554322 222 367777777655432 478888876543
No 261
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=36.61 E-value=5.6 Score=33.45 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=19.0
Q ss_pred cCCCCeeeeeccccccccccceeeee
Q 010559 361 IGAGYRLIDMITEPYRLIRRCEVTAI 386 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~~~eV~~I 386 (507)
|.+||+|+.|||.++......++..+
T Consensus 69 L~~GD~I~~Ing~~v~~~~~~~~~~~ 94 (114)
T 2gzv_A 69 VAAGDEITGVNGRSIKGKTKVEVAKM 94 (114)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHH
Confidence 78999999999999854444444433
No 262
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=36.32 E-value=11 Score=43.57 Aligned_cols=42 Identities=17% Similarity=0.304 Sum_probs=30.5
Q ss_pred hhhhhhhcchhhHHHHhc-CCCCC-CCcchhhHHHHHHHHHhhc
Q 010559 396 LTGSILAHEMMHAWLRLK-GYPNL-RPDVEEGICQVLAHMWLES 437 (507)
Q Consensus 396 L~gsilaHE~~Hawl~~~-g~~~L-~~~~eEG~cq~~a~~wl~~ 437 (507)
....+||||++|-|..-- ....- ...+-|||..+|+++|++.
T Consensus 363 ~~~~vIaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~ 406 (967)
T 3se6_A 363 WVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNA 406 (967)
T ss_dssp HHHHHHHHHHGGGTBTTTEEESSGGGTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCccccCCCccccHHHHHHHHHHHHHHHH
Confidence 345799999999996421 11111 3478999999999999874
No 263
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=36.18 E-value=5.4 Score=31.49 Aligned_cols=17 Identities=6% Similarity=0.237 Sum_probs=15.0
Q ss_pred ccCCCCeeeeecccccc
Q 010559 360 RIGAGYRLIDMITEPYR 376 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~ 376 (507)
-|.+||.|+.|||.++.
T Consensus 45 Gl~~GD~I~~ing~~v~ 61 (90)
T 2eaq_A 45 QLQVDDEIIAINNTKFS 61 (90)
T ss_dssp TCCTTCEEEEETTEECC
T ss_pred CCCCCCEEEEECCEEcc
Confidence 47899999999999984
No 264
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.73 E-value=30 Score=27.25 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=12.3
Q ss_pred CCCCCcCccCCccccc
Q 010559 150 FSGYRICAGCNTEIGH 165 (507)
Q Consensus 150 ~~g~~~C~~C~k~I~~ 165 (507)
......|+.|...|..
T Consensus 12 ~~~i~~C~IC~~~i~~ 27 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQ 27 (74)
T ss_dssp SSSSCBCSSSCCBCSS
T ss_pred cCCCCcCcchhhHccc
Confidence 4456789999999853
No 265
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=35.58 E-value=15 Score=30.21 Aligned_cols=47 Identities=4% Similarity=-0.048 Sum_probs=30.8
Q ss_pred cCCcccCCCCCCCCCcceeecCC-cccccccccccc--CccccccCCcccc
Q 010559 178 PECFRCHSCNLPITDVEFSMSGN-RPYHKHCYKEQH--HPKCDVCQNFIPT 225 (507)
Q Consensus 178 p~CF~Cs~C~~~L~~~~f~~~~g-k~yCk~CY~~~f--~pkC~~C~~~I~~ 225 (507)
|.-|.|..|...+.+--. ...| ..||+.|..+.+ ...|..|++++..
T Consensus 20 p~~~~CpI~~~~m~dPV~-~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVV-LPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeE-CCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 556888888877766333 3455 889988854322 4567777776654
No 266
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.53 E-value=17 Score=29.31 Aligned_cols=13 Identities=15% Similarity=0.347 Sum_probs=9.3
Q ss_pred CCCccCCCCCcCC
Q 010559 251 GTPRCCSCERMEP 263 (507)
Q Consensus 251 ~CF~C~~C~~~l~ 263 (507)
.-|.|..|++.+.
T Consensus 79 ~~~~C~~C~k~f~ 91 (115)
T 2dmi_A 79 KVLKCMYCGHSFE 91 (115)
T ss_dssp SSCBCSSSCCBCS
T ss_pred cceECCCCCCccC
Confidence 3578888888664
No 267
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=35.19 E-value=16 Score=29.55 Aligned_cols=11 Identities=18% Similarity=0.603 Sum_probs=7.2
Q ss_pred CcCccCCcccc
Q 010559 154 RICAGCNTEIG 164 (507)
Q Consensus 154 ~~C~~C~k~I~ 164 (507)
..|..|..+|.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 35777777763
No 268
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A
Probab=34.74 E-value=16 Score=33.72 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=18.0
Q ss_pred eeeeeecCchhhhhhhhhhcchhhHH
Q 010559 384 TAILILYGLPRLLTGSILAHEMMHAW 409 (507)
Q Consensus 384 ~~Il~l~glP~~L~gsilaHE~~Haw 409 (507)
.+|+..++...+.+..|+|||++|.+
T Consensus 123 ~gi~~~~~~~~~~~a~~~AHElGH~l 148 (202)
T 2w15_A 123 VGVVRDHSKNNLWVAVTMAHELGHNL 148 (202)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred ceEEecCCCchhHHHHHHHHHHhhhc
Confidence 35556665444456889999999964
No 269
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.68 E-value=15 Score=30.01 Aligned_cols=12 Identities=17% Similarity=0.432 Sum_probs=6.8
Q ss_pred CCcccccccccc
Q 010559 199 GNRPYHKHCYKE 210 (507)
Q Consensus 199 ~gk~yCk~CY~~ 210 (507)
=|..||..|...
T Consensus 39 CgH~fC~~Ci~~ 50 (112)
T 1jm7_A 39 CDHIFCKFCMLK 50 (112)
T ss_dssp TSCCCCSHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 355666666543
No 270
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=34.67 E-value=20 Score=29.53 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=32.6
Q ss_pred cCCcccCCCCCCCCCcceeecCCcccccccccccc--CccccccCCccccC
Q 010559 178 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPTN 226 (507)
Q Consensus 178 p~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f--~pkC~~C~~~I~~~ 226 (507)
|.-|.|..|...+.+-- ....|..||+.|-...+ ...|..|++++...
T Consensus 27 p~~~~CpI~~~~m~dPV-~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPV-RLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSSEE-EETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccCCe-ECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 66788888888777633 33578889988854322 45777777776653
No 271
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=34.62 E-value=6.9 Score=32.46 Aligned_cols=21 Identities=5% Similarity=0.227 Sum_probs=17.5
Q ss_pred ccCCCCeeeeecccccccccc
Q 010559 360 RIGAGYRLIDMITEPYRLIRR 380 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~ 380 (507)
-|.+||.|+.||+.++.....
T Consensus 58 GL~~GD~Il~vng~~v~~~~~ 78 (114)
T 1x5n_A 58 GLEIGDQIVEVNGVDFSNLDH 78 (114)
T ss_dssp TCCTTCEEEEETTEETTSCCT
T ss_pred CCCCCCEEEEECCEECCCCCH
Confidence 478999999999999876543
No 272
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}
Probab=34.58 E-value=16 Score=33.96 Aligned_cols=25 Identities=24% Similarity=0.121 Sum_probs=18.2
Q ss_pred eeeeecCchhhhhhhhhhcchhhHH
Q 010559 385 AILILYGLPRLLTGSILAHEMMHAW 409 (507)
Q Consensus 385 ~Il~l~glP~~L~gsilaHE~~Haw 409 (507)
+|....+.....++.|+|||++|-.
T Consensus 121 ~v~~d~~~~~~~~a~~~AHElGH~l 145 (208)
T 4dd8_A 121 AVNQDHSKNPVGVACTMAHEMGHNL 145 (208)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred eEEecCCCChhHHHHHHHHHHHHHc
Confidence 4556666555666789999999953
No 273
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=34.55 E-value=3 Score=35.02 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=16.5
Q ss_pred cCCCCeeeeeccccccccc
Q 010559 361 IGAGYRLIDMITEPYRLIR 379 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~~ 379 (507)
|.+||+|+.|||.++....
T Consensus 57 L~~GD~I~~vng~~v~~~~ 75 (119)
T 1tp5_A 57 LRKGDQILSVNGVDLRNAS 75 (119)
T ss_dssp CCTTEEEEEETTEECTTCC
T ss_pred CCCCCEEEEECCEECCCCC
Confidence 7899999999999987654
No 274
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=34.51 E-value=9.3 Score=43.60 Aligned_cols=42 Identities=17% Similarity=0.363 Sum_probs=29.8
Q ss_pred hhhhhhcchhhHHHHhc-CCCCC-CCcchhhHHHHHHHHHhhcc
Q 010559 397 TGSILAHEMMHAWLRLK-GYPNL-RPDVEEGICQVLAHMWLESE 438 (507)
Q Consensus 397 ~gsilaHE~~Hawl~~~-g~~~L-~~~~eEG~cq~~a~~wl~~~ 438 (507)
...+||||+.|-|..-. ....- ...+-|||..++.++|++..
T Consensus 287 i~~vIaHElAHqWfGnlVT~~~W~dlWLnEGfAty~e~~~~~~~ 330 (867)
T 2gtq_A 287 IESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDR 330 (867)
T ss_dssp HHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcEEEecccccccchHHHHHHHHHHHHHHH
Confidence 34699999999995421 12222 24789999999998887653
No 275
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=34.30 E-value=3.2 Score=34.06 Aligned_cols=19 Identities=5% Similarity=-0.008 Sum_probs=16.5
Q ss_pred ccCCCCeeeeecccccccc
Q 010559 360 RIGAGYRLIDMITEPYRLI 378 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~ 378 (507)
.|.+||+|+.|||.++...
T Consensus 55 gl~~GD~I~~vng~~v~~~ 73 (107)
T 2h2b_A 55 QLQENDRVAMVNGVSMDNV 73 (107)
T ss_dssp TBCTTCEEEEETTEECTTC
T ss_pred CCCCCCEEEEECCEECCCc
Confidence 5789999999999998754
No 276
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=34.27 E-value=33 Score=28.60 Aligned_cols=96 Identities=15% Similarity=0.227 Sum_probs=52.8
Q ss_pred CCcCccCCcccccCceeeec--CceeccCCcccCCCCCCCCCcceeecCCccccccccccccCccccccCCccccCcccc
Q 010559 153 YRICAGCNTEIGHGRYLSCM--EAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGL 230 (507)
Q Consensus 153 ~~~C~~C~k~I~~g~~i~al--g~~wHp~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~pkC~~C~~~I~~~~~g~ 230 (507)
...|..|+..-.....|... ++.||+.|..=.. .+ ...+.-+|..|. .|.+|++.-.... +
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~--~~-------~~~~~W~C~~C~------~C~~C~~~~~~~~--l 69 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV--TP-------LKRAGWQCPECK------VCQNCKQSGEDSK--M 69 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC--CT-------TTSTTCCCTTTC------CCTTTCCCSCCTT--E
T ss_pred CCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc--cc-------ccccCccCCcCC------cccccCccCCCCC--e
Confidence 35788888753223335443 4789998864321 11 134667888885 5899987654321 1
Q ss_pred eeeccccccccccCCCccCCCCCccCCCCCcCCCCCceEEccCCceeccccccc
Q 010559 231 IEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS 284 (507)
Q Consensus 231 i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~ 284 (507)
+ . =..|+..||..|..- ++. .+..+.++|..|...
T Consensus 70 l-~-------Cd~C~~~yH~~Cl~p-----pl~------~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 70 L-V-------CDTCDKGYHTFCLQP-----VMK------SVPTNGWKCKNCRIC 104 (111)
T ss_dssp E-E-------CSSSCCEEEGGGSSS-----CCS------SCCSSCCCCHHHHCC
T ss_pred e-E-------CCCCCcHHhHHhcCC-----ccc------cCCCCCcCCcCCcCc
Confidence 1 1 113555556544421 121 123578899988654
No 277
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=34.26 E-value=18 Score=34.30 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=30.0
Q ss_pred cCCcccCCCCCCCCCcceeecCCccccccccccc---cCccccccCCccccC
Q 010559 178 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ---HHPKCDVCQNFIPTN 226 (507)
Q Consensus 178 p~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~---f~pkC~~C~~~I~~~ 226 (507)
|.-|.|..|...+.+- .....|..||+.|-... .+..|..|+.++...
T Consensus 206 ~~~~~c~i~~~~~~dP-v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELMREP-CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBCSSE-EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CcccCCcCcCCHhcCC-eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 3456777776666553 23346788888886432 233488888877643
No 278
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=34.15 E-value=9.3 Score=29.85 Aligned_cols=40 Identities=13% Similarity=0.268 Sum_probs=26.0
Q ss_pred CccCCCCCcCCCCCceEEccCCceecccccccccCCCCCCccccHHHHHHHhhcCCccccccceEEEe
Q 010559 253 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVE 320 (507)
Q Consensus 253 F~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~~~I~~f~e~l~~~i~~~iPv~LVe 320 (507)
.+|-.|+..|. +....|.++|..|-. -.+|...||++|++
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~cg~-----------------------~YPI~dGIPvmL~~ 48 (68)
T 2hf1_A 9 LVCPLCKGPLV-----FDKSKDELICKGDRL-----------------------AFPIKDGIPMMLES 48 (68)
T ss_dssp CBCTTTCCBCE-----EETTTTEEEETTTTE-----------------------EEEEETTEECCCGG
T ss_pred eECCCCCCcCe-----EeCCCCEEEcCCCCc-----------------------EecCCCCeeeeChh
Confidence 56777776652 233467888877622 24677889988876
No 279
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.76 E-value=15 Score=28.26 Aligned_cols=44 Identities=20% Similarity=0.430 Sum_probs=24.2
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--------CccccccCCcccc
Q 010559 181 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--------HPKCDVCQNFIPT 225 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f--------~pkC~~C~~~I~~ 225 (507)
+.|..|...+.... ...=|..||..|....+ ...|..|...+..
T Consensus 20 ~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 20 VTCPICLELLKEPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TSCTTTCSCCSSCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCcCCChhhCcce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 45555555544322 22345667777765421 4567777777654
No 280
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=33.62 E-value=16 Score=28.83 Aligned_cols=18 Identities=6% Similarity=-0.082 Sum_probs=15.9
Q ss_pred ccCCCCeeeeeccccccc
Q 010559 360 RIGAGYRLIDMITEPYRL 377 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~ 377 (507)
-|.+||.|+.|||.+++.
T Consensus 36 Gl~~GD~I~~ing~~v~~ 53 (87)
T 2i6v_A 36 GLQDGDMAVALNGLDLTD 53 (87)
T ss_dssp TCCTTCEEEEETTEETTC
T ss_pred CCCCCCEEEEECCEECCC
Confidence 478999999999999874
No 281
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=33.52 E-value=12 Score=33.20 Aligned_cols=44 Identities=11% Similarity=0.314 Sum_probs=25.5
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc---CccccccCCccc
Q 010559 181 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIP 224 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f---~pkC~~C~~~I~ 224 (507)
+.|..|...+........-|..||..|....+ ...|..|...|.
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 56677766665432222456778888865432 345666666654
No 282
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=33.23 E-value=4.9 Score=44.73 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=27.2
Q ss_pred cccCCCCeeeeeccccccccccceeeeeeeecCchhhh
Q 010559 359 PRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 396 (507)
Q Consensus 359 ~~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 396 (507)
..|++||+|++|||.+++.....++..+|...|-+..|
T Consensus 348 G~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v~L 385 (721)
T 2xkx_A 348 GELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 385 (721)
T ss_pred CCCccCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEE
Confidence 34899999999999999876666655555544444444
No 283
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=33.03 E-value=16 Score=27.81 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=14.3
Q ss_pred Ccccccccccccc---------CccccccCCcccc
Q 010559 200 NRPYHKHCYKEQH---------HPKCDVCQNFIPT 225 (507)
Q Consensus 200 gk~yCk~CY~~~f---------~pkC~~C~~~I~~ 225 (507)
|..||..|..+.+ ...|..|...+..
T Consensus 31 gH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 31 GHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4556666654322 3456666666654
No 284
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=33.01 E-value=23 Score=26.22 Aligned_cols=44 Identities=16% Similarity=0.474 Sum_probs=23.5
Q ss_pred ccCCCCCCCCCcceeecCCccccccccccc--cCccccccCCcccc
Q 010559 182 RCHSCNLPITDVEFSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIPT 225 (507)
Q Consensus 182 ~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~--f~pkC~~C~~~I~~ 225 (507)
.|..|...+........=|..||..|.... ....|..|...+..
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 344444444432222233556677776432 24578888877764
No 285
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Probab=32.73 E-value=19 Score=33.25 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=16.8
Q ss_pred eeeeecCchhhhhhhhhhcchhhHH
Q 010559 385 AILILYGLPRLLTGSILAHEMMHAW 409 (507)
Q Consensus 385 ~Il~l~glP~~L~gsilaHE~~Haw 409 (507)
+|...++..-+.++.|+|||++|-+
T Consensus 124 gi~~~~~~~~~~~a~~~AHElGHnl 148 (202)
T 1atl_A 124 GIVQDHSPINLLMGVTMAHELGHNL 148 (202)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred ceEeccCCcceeeEEEehhhhcccc
Confidence 4555554433446789999999964
No 286
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=32.71 E-value=15 Score=30.25 Aligned_cols=44 Identities=16% Similarity=0.343 Sum_probs=23.1
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--CccccccCCccc
Q 010559 181 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIP 224 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f--~pkC~~C~~~I~ 224 (507)
+.|..|...+........-|..||..|....+ ...|..|...+.
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp TBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 55666666554422221446677777754322 245666655554
No 287
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=32.44 E-value=10 Score=29.64 Aligned_cols=42 Identities=10% Similarity=0.089 Sum_probs=27.2
Q ss_pred CCCccCCCCCcCCCCCceEEccCCceecccccccccCCCCCCccccHHHHHHHhhcCCccccccceEEEe
Q 010559 251 GTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVE 320 (507)
Q Consensus 251 ~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~~~I~~f~e~l~~~i~~~iPv~LVe 320 (507)
.-.+|-.|+..|. +....|.++|..|-. -.+|...||++|++
T Consensus 7 ~iL~CP~ck~~L~-----~~~~~~~LiC~~cg~-----------------------~YPI~dGIPvmL~~ 48 (68)
T 2jr6_A 7 DILVCPVTKGRLE-----YHQDKQELWSRQAKL-----------------------AYPIKDGIPYMLEN 48 (68)
T ss_dssp CCCBCSSSCCBCE-----EETTTTEEEETTTTE-----------------------EEEEETTEECCCTT
T ss_pred hheECCCCCCcCe-----EeCCCCEEEcCCCCc-----------------------EecCCCCeeeeChh
Confidence 3466777777662 233457888877622 24667889988876
No 288
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=32.12 E-value=24 Score=27.07 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=24.6
Q ss_pred ccCCCCCCCCCcceeecCCcc-ccccccccccCccccccCCcccc
Q 010559 182 RCHSCNLPITDVEFSMSGNRP-YHKHCYKEQHHPKCDVCQNFIPT 225 (507)
Q Consensus 182 ~Cs~C~~~L~~~~f~~~~gk~-yCk~CY~~~f~pkC~~C~~~I~~ 225 (507)
.|..|...+.+.-+. .=|.. ||..|.... .+|..|...|..
T Consensus 26 ~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 26 LCKICMDRNIAIVFV-PCGHLVTCKQCAEAV--DKCPMCYTVITF 67 (74)
T ss_dssp BCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC--SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCEEEc-CCCChhHHHHhhhcC--ccCCCcCcCccC
Confidence 444444444433232 23445 788886654 789999988875
No 289
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.70 E-value=24 Score=26.51 Aligned_cols=27 Identities=22% Similarity=0.533 Sum_probs=17.8
Q ss_pred CCccccccccccc--cCccccccCCcccc
Q 010559 199 GNRPYHKHCYKEQ--HHPKCDVCQNFIPT 225 (507)
Q Consensus 199 ~gk~yCk~CY~~~--f~pkC~~C~~~I~~ 225 (507)
=|..||..|.... ....|..|...|..
T Consensus 33 CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 33 CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 3566777776442 33678888888765
No 290
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=31.56 E-value=7.4 Score=33.98 Aligned_cols=24 Identities=4% Similarity=0.140 Sum_probs=18.2
Q ss_pred ccCCCCeeeeecccccccccccee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEV 383 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV 383 (507)
-|.+||.|++|||.++......++
T Consensus 81 GL~~GD~I~~vng~~v~~~~~~~~ 104 (139)
T 2vz5_A 81 GLQIGDKIMQVNGWDMTMVTHDQA 104 (139)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCCCCEEEEECCEEcCCCCHHHH
Confidence 378999999999999885433333
No 291
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A
Probab=30.76 E-value=22 Score=32.66 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=17.1
Q ss_pred eeeeeecCchhhhhhhhhhcchhhHH
Q 010559 384 TAILILYGLPRLLTGSILAHEMMHAW 409 (507)
Q Consensus 384 ~~Il~l~glP~~L~gsilaHE~~Haw 409 (507)
.+|...++..-+.+..|+|||++|.+
T Consensus 120 ~gi~~~~~~~~~~~a~~~AHElGH~l 145 (197)
T 1bud_A 120 VGVIQDHSSVNRLVAITLAHEMAHNL 145 (197)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred cceEeecCCchhHHHHHHHHHHhhhc
Confidence 34555554333446789999999964
No 292
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.34 E-value=14 Score=27.67 Aligned_cols=44 Identities=16% Similarity=0.443 Sum_probs=25.4
Q ss_pred cccCCCCCCCCCcceeecCCccccccccccc--cCccccccCCccccC
Q 010559 181 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIPTN 226 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~--f~pkC~~C~~~I~~~ 226 (507)
+.|..|...+.. ....=|..||..|..+. ....|..|...|...
T Consensus 16 ~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 445555555444 22334566777776543 246788888777653
No 293
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=30.32 E-value=23 Score=28.12 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=31.9
Q ss_pred cCCcccCCCCCCCCCcceeecCCcccccccccccc--CccccccCCcccc
Q 010559 178 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPT 225 (507)
Q Consensus 178 p~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f--~pkC~~C~~~I~~ 225 (507)
+.-|.|..|...+.+- .....|..||+.|-.+.+ ...|-.|++++..
T Consensus 12 p~~~~CpI~~~~m~dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP-VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCC-eECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 5568888888877763 333478889988854322 4578888777654
No 294
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.22 E-value=17 Score=28.09 Aligned_cols=43 Identities=21% Similarity=0.568 Sum_probs=24.2
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--CccccccCCccc
Q 010559 181 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIP 224 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f--~pkC~~C~~~I~ 224 (507)
+.|..|...+... ....=|..||..|....+ ...|..|...+.
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQNP-VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCSE-EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhcCe-eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3455554444332 222346677777765432 456888888775
No 295
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=30.19 E-value=20 Score=26.97 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=22.4
Q ss_pred ccCCCCCCCCCcceeecCCcccc-cccccc
Q 010559 182 RCHSCNLPITDVEFSMSGNRPYH-KHCYKE 210 (507)
Q Consensus 182 ~Cs~C~~~L~~~~f~~~~gk~yC-k~CY~~ 210 (507)
.|..|+..++...-+.++|+.|| +.|...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 47788888877676778999999 677643
No 296
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9
Probab=30.16 E-value=22 Score=32.58 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=17.3
Q ss_pred eeeeeecCchhhhhhhhhhcchhhHH
Q 010559 384 TAILILYGLPRLLTGSILAHEMMHAW 409 (507)
Q Consensus 384 ~~Il~l~glP~~L~gsilaHE~~Haw 409 (507)
.+|...++..-+.+..|+|||++|.+
T Consensus 122 ~gi~~~~~~~~~~~a~~~AHElGH~l 147 (197)
T 1qua_A 122 VGLIQDHSAIPLLMAVTMAHELGHNL 147 (197)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred cceEeccCCcchHHHHHHHHHHHHhc
Confidence 34555655333446789999999964
No 297
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Probab=30.05 E-value=23 Score=32.72 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=17.4
Q ss_pred eeeeeecCchhhhhhhhhhcchhhHH
Q 010559 384 TAILILYGLPRLLTGSILAHEMMHAW 409 (507)
Q Consensus 384 ~~Il~l~glP~~L~gsilaHE~~Haw 409 (507)
.+|...++..-+.+..|+|||++|-+
T Consensus 122 ~gi~~~~~~~~~~~a~~~AHElGH~l 147 (202)
T 1yp1_A 122 AGIIQDFSAIPLLMAVVMAHELGHNL 147 (202)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred CceEeecCCchhHHHHHHHHHHHHhc
Confidence 34555554333446789999999964
No 298
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=29.73 E-value=8.2 Score=32.60 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=19.3
Q ss_pred ccCCCCeeeeeccccccccccceeee
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCEVTA 385 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~eV~~ 385 (507)
-|.+||+|+.|||.++......++..
T Consensus 50 Gl~~GD~I~~ing~~v~~~~~~~~~~ 75 (128)
T 2kjd_A 50 GLRAQDRIVEVNGVCMEGKQHGDVVS 75 (128)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHH
Confidence 37899999999999987644444333
No 299
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=29.64 E-value=20 Score=29.30 Aligned_cols=18 Identities=6% Similarity=-0.082 Sum_probs=16.0
Q ss_pred ccCCCCeeeeeccccccc
Q 010559 360 RIGAGYRLIDMITEPYRL 377 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~ 377 (507)
-|.+||.|+.|||.+++.
T Consensus 54 Gl~~GDvI~~ing~~v~~ 71 (105)
T 2i4s_A 54 GLQDGDMAVALNGLDLTD 71 (105)
T ss_dssp TCCTTCEEEEETTEETTS
T ss_pred CCCCCCEEEEECCEECCC
Confidence 478999999999999874
No 300
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A
Probab=29.61 E-value=23 Score=32.74 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=16.9
Q ss_pred eeeeecCchhhhhhhhhhcchhhHH
Q 010559 385 AILILYGLPRLLTGSILAHEMMHAW 409 (507)
Q Consensus 385 ~Il~l~glP~~L~gsilaHE~~Haw 409 (507)
+|...++..-+.+..|+|||++|.+
T Consensus 126 gi~~~~~~~~~~~a~~~AHElGH~l 150 (203)
T 1kuf_A 126 AVVKDHSSKVFMVAVTMTHELGHNL 150 (203)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred eEEecCCCcchhhHHHHHHHhhhhc
Confidence 4555554433456789999999964
No 301
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=29.31 E-value=22 Score=29.90 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=15.3
Q ss_pred cCCCCeeeeeccccccc
Q 010559 361 IGAGYRLIDMITEPYRL 377 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~ 377 (507)
|.+||.|+.||+.++..
T Consensus 67 l~~GD~I~~ing~~v~~ 83 (124)
T 1wh1_A 67 IREGDRIIQINGIEVQN 83 (124)
T ss_dssp CCTTCEEEEESSCBCCS
T ss_pred CCCCCEEEEECCEECCC
Confidence 88999999999999864
No 302
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=29.17 E-value=5.4 Score=36.16 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=18.2
Q ss_pred ccCCCCeeeeeccccccccccc
Q 010559 360 RIGAGYRLIDMITEPYRLIRRC 381 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~ 381 (507)
.|.+||+|++|||.++......
T Consensus 40 gl~~GD~I~~vng~~v~~~~~~ 61 (195)
T 2qbw_A 40 LLQPGDKIIQANGYSFINIEHG 61 (195)
T ss_dssp TCCTTCEEEEETTEECTTCCHH
T ss_pred CCCCCCEEEEECCEECCCCCHH
Confidence 6889999999999998765433
No 303
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=29.01 E-value=14 Score=27.58 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=29.9
Q ss_pred CCccCCCCCcCCCCCceEEccCCceecccccccccCCCCCCccccHHH
Q 010559 252 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 299 (507)
Q Consensus 252 CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~~~I 299 (507)
-..|..|...+..+.....+.=|..||..|....+.....|--|..+|
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBS
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccc
Confidence 356777766664445555566678888888875444445566665443
No 304
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=28.93 E-value=19 Score=28.94 Aligned_cols=20 Identities=5% Similarity=0.202 Sum_probs=16.7
Q ss_pred ccCCCCeeeeeccccccccc
Q 010559 360 RIGAGYRLIDMITEPYRLIR 379 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~ 379 (507)
-|.+||+|+.||+.++....
T Consensus 52 GL~~GD~I~~ing~~v~~~~ 71 (101)
T 1uez_A 52 GLRVGDQILRVNDKSLARVT 71 (101)
T ss_dssp TCCSSCCEEEETTEECSSCC
T ss_pred CCCCCCEEEEECCEECCCcC
Confidence 37899999999999887643
No 305
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=28.47 E-value=23 Score=28.47 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.7
Q ss_pred ccCCCCeeeeeccccccc
Q 010559 360 RIGAGYRLIDMITEPYRL 377 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~ 377 (507)
.|.+||.|+.|||.++..
T Consensus 17 GL~~GD~I~~InG~~v~~ 34 (91)
T 2kjp_A 17 KIEVGDKIISADGKNYQS 34 (91)
T ss_dssp CCCSSCEEEEETTBCCSS
T ss_pred cCCCCCEEEEECCEECCC
Confidence 478999999999999864
No 306
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=28.23 E-value=5.1 Score=36.62 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=18.7
Q ss_pred ccCCCCeeeeeccccccccccce
Q 010559 360 RIGAGYRLIDMITEPYRLIRRCE 382 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~~e 382 (507)
.|.+||+|+.|||.++....+.+
T Consensus 51 gl~~GD~I~~vng~~v~~~~~~~ 73 (200)
T 2qt5_A 51 QLDVGDYIKAVNGINLAKFRHDE 73 (200)
T ss_dssp SCCTTCEEEEETTEECTTSCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 68899999999999998664333
No 307
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=28.15 E-value=35 Score=27.67 Aligned_cols=32 Identities=22% Similarity=0.583 Sum_probs=24.3
Q ss_pred CCcCccCCcccccCceeeecCceeccCCcccC
Q 010559 153 YRICAGCNTEIGHGRYLSCMEAFWHPECFRCH 184 (507)
Q Consensus 153 ~~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs 184 (507)
.-.|.-|.+.+.+..++.+-...-|.-||-|+
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCs 46 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCS 46 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeecccc
Confidence 45678888888767778877777788888775
No 308
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Probab=28.15 E-value=22 Score=36.91 Aligned_cols=26 Identities=38% Similarity=0.474 Sum_probs=19.6
Q ss_pred eeeeeecCchhhhhhhhhhcchhhHH
Q 010559 384 TAILILYGLPRLLTGSILAHEMMHAW 409 (507)
Q Consensus 384 ~~Il~l~glP~~L~gsilaHE~~Haw 409 (507)
.+|+..++...+.+..|+|||++|-+
T Consensus 124 ~gi~~d~~~~~~~~a~t~AHElGHnl 149 (419)
T 2dw0_A 124 TGIIQDYSEINLVVAVIMAHEMGHNL 149 (419)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred eEEEecCCCcchhhhhhHHHHHHHHc
Confidence 45666676555667889999999964
No 309
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.02 E-value=14 Score=27.95 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=29.9
Q ss_pred CccCCCCCcCCCCCceEEccCCceecccccccccCCCCCCccccHHH
Q 010559 253 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 299 (507)
Q Consensus 253 F~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~~~I 299 (507)
..|..|-..+........+.=|..||..|....+.....|--|..+|
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 56777777665555555556678888888876544445566666444
No 310
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron transfer, Fe reduction, GEO sulfurreducens, cytochrome C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Probab=27.93 E-value=17 Score=32.81 Aligned_cols=90 Identities=12% Similarity=0.265 Sum_probs=42.5
Q ss_pred ccccccccc--ccCc--cccccCCccccCcccceeeccccccccccCCCccCCCCCccCCCCCcCCC---CCceEEcc--
Q 010559 202 PYHKHCYKE--QHHP--KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPR---DTKYLSLD-- 272 (507)
Q Consensus 202 ~yCk~CY~~--~f~p--kC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~h~H~~CF~C~~C~~~l~~---g~~y~~l~-- 272 (507)
-+|..|... .|.+ .|..|...+.+.. |.+...+ +..+=+...|..-+.|..|..-+-. +..-+.+.
T Consensus 56 ~~C~~CH~g~~af~~~~~C~~CH~~~~~~~---i~~~~~~--~~V~F~H~~H~~~~~C~~CH~~v~~~~~~~~~~tm~~~ 130 (158)
T 3oue_A 56 KSCGACHNGKDAFSSASDCGKCHPGLKPAK---LTYKTSV--GEAYFDHDIHLSMFKCADCHTKVFKYRKGSAPATMADM 130 (158)
T ss_dssp CGGGGTBSSSSBCCTTSCHHHHCGGGCCCC---EEEEETT--EEEEECHHHHHTTCCGGGTBTTTBCSSTTSSCCCHHHH
T ss_pred CchhhhcCCcccCChhhhchhhhhcccccc---eEeecCC--CCccCChhHhCCCCChhhhccchhhcccCCCCcchhhh
Confidence 456666542 2333 5888876544432 2222100 0001011224334889999875411 11112121
Q ss_pred CCceecccccccccCCC--CCCcccc
Q 010559 273 DGRKLCLECLDSAIMDT--HECQPLY 296 (507)
Q Consensus 273 dGr~~C~~C~~~~v~~t--~~C~~c~ 296 (507)
..-.+|..|++-...++ ..|.-|.
T Consensus 131 ~~gk~Cg~CH~gk~Af~~~~~C~~CH 156 (158)
T 3oue_A 131 EKGKSCGVCHNGKDAFSVADDCVKCH 156 (158)
T ss_dssp HTTCGGGGTBTTTSBCCSSSCGGGTE
T ss_pred hccChhHhhcCCCccCCCcccHHHHc
Confidence 11369999997433343 3787775
No 311
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.89 E-value=26 Score=26.89 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=24.5
Q ss_pred ccCCCCCCCCCcceeecCCcc-ccccccccccCccccccCCcccc
Q 010559 182 RCHSCNLPITDVEFSMSGNRP-YHKHCYKEQHHPKCDVCQNFIPT 225 (507)
Q Consensus 182 ~Cs~C~~~L~~~~f~~~~gk~-yCk~CY~~~f~pkC~~C~~~I~~ 225 (507)
.|..|...+....+. .=|.. ||..|... ..+|..|...|..
T Consensus 27 ~C~IC~~~~~~~~~~-pCgH~~~C~~C~~~--~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 27 LCKICMDRNIAIVFV-PCGHLVTCKQCAEA--VDKCPMCYTVITF 68 (75)
T ss_dssp SCSSSCSSCCCBCCS-SSCCCCBCHHHHHH--CSBCTTTCCBCCC
T ss_pred CCCcCCCCCCCEEEe-cCCCHHHHHHHhhC--CCCCccCCceecC
Confidence 444454444333232 23445 78888754 3789999998876
No 312
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*
Probab=27.88 E-value=21 Score=37.16 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=18.6
Q ss_pred eeeeeecCchhhhhhhhhhcchhhHH
Q 010559 384 TAILILYGLPRLLTGSILAHEMMHAW 409 (507)
Q Consensus 384 ~~Il~l~glP~~L~gsilaHE~~Haw 409 (507)
.+|+..++.-.+.+..|+|||++|-+
T Consensus 133 ~gi~~d~~~~~~~~a~t~AHElGHnl 158 (427)
T 2ero_A 133 AGIVQDHSKIHHLVAIAMAHEMGHNL 158 (427)
T ss_dssp EEEEECCBSSHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCchhHHHHHHHHHHHHhc
Confidence 35555555445667889999999965
No 313
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=27.73 E-value=17 Score=41.65 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=30.1
Q ss_pred hhhhhhhcchhhHHHHhc-CCCCC-CCcchhhHHHHHHHHHhhcc
Q 010559 396 LTGSILAHEMMHAWLRLK-GYPNL-RPDVEEGICQVLAHMWLESE 438 (507)
Q Consensus 396 L~gsilaHE~~Hawl~~~-g~~~L-~~~~eEG~cq~~a~~wl~~~ 438 (507)
....+||||+.|-|..-. ....- ...+-|||..++.++|++..
T Consensus 294 ~i~~vIAHElAHQWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~ 338 (889)
T 3ebh_A 294 RILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEM 338 (889)
T ss_dssp HHHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCeeeecccccceeeHHHHHHHHHHHHHHh
Confidence 345699999999996421 11122 23789999999998887643
No 314
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=27.73 E-value=12 Score=35.12 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=9.6
Q ss_pred ecCCcccccccccc
Q 010559 197 MSGNRPYHKHCYKE 210 (507)
Q Consensus 197 ~~~gk~yCk~CY~~ 210 (507)
..+|+++|..|+.+
T Consensus 189 ~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 189 LLNGKPVCKPDYYG 202 (204)
T ss_dssp EETTEEECHHHHHC
T ss_pred eeCCcEEChhhhcc
Confidence 35677888888753
No 315
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=27.42 E-value=24 Score=32.60 Aligned_cols=48 Identities=8% Similarity=0.051 Sum_probs=30.7
Q ss_pred cCCcccCCCCCCCCCcceeecCCccccccccccc---cCccccccCCccccC
Q 010559 178 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ---HHPKCDVCQNFIPTN 226 (507)
Q Consensus 178 p~CF~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~---f~pkC~~C~~~I~~~ 226 (507)
|.-|.|..|...+.+ ......|..||+.|-... .+..|..|+.++...
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 445777777766665 333356888888875432 244688888877653
No 316
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=27.24 E-value=15 Score=41.95 Aligned_cols=42 Identities=14% Similarity=0.335 Sum_probs=29.5
Q ss_pred hhhhhhcchhhHHHHhc-CCCCC-CCcchhhHHHHHHHHHhhcc
Q 010559 397 TGSILAHEMMHAWLRLK-GYPNL-RPDVEEGICQVLAHMWLESE 438 (507)
Q Consensus 397 ~gsilaHE~~Hawl~~~-g~~~L-~~~~eEG~cq~~a~~wl~~~ 438 (507)
...+||||+.|-|..-. ....- ...+-|||..++.++|++..
T Consensus 312 i~~vIAHElAHqWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~ 355 (891)
T 3b34_A 312 IERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL 355 (891)
T ss_dssp HHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcccchhhceehHHHHHHHHHHHHHHH
Confidence 35799999999995321 11111 23689999999998888754
No 317
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=27.18 E-value=17 Score=29.65 Aligned_cols=46 Identities=17% Similarity=0.436 Sum_probs=25.8
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--C-ccccccCCccccC
Q 010559 181 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--H-PKCDVCQNFIPTN 226 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f--~-pkC~~C~~~I~~~ 226 (507)
+.|..|...+........=|..||..|....+ . ..|..|...+...
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 45555555554322212346678888865432 2 5788888777543
No 318
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.13 E-value=22 Score=27.61 Aligned_cols=28 Identities=11% Similarity=0.402 Sum_probs=18.2
Q ss_pred CCcccccccccccc-----CccccccCCccccC
Q 010559 199 GNRPYHKHCYKEQH-----HPKCDVCQNFIPTN 226 (507)
Q Consensus 199 ~gk~yCk~CY~~~f-----~pkC~~C~~~I~~~ 226 (507)
=|..||..|....+ ..+|..|...+...
T Consensus 37 CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 37 CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 35677777765432 25788888877654
No 319
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=27.06 E-value=21 Score=29.23 Aligned_cols=46 Identities=11% Similarity=0.239 Sum_probs=33.1
Q ss_pred CCccCCCCCcCCCCCceEEccCCceecccccccccCCCCCCccccHHH
Q 010559 252 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 299 (507)
Q Consensus 252 CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~~~I 299 (507)
-+.|..|...+. .......=|..||..|....+.....|--|..++
T Consensus 15 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 15 HLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60 (108)
T ss_dssp GTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBS
T ss_pred cCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccc
Confidence 377888888773 3444447899999999987766566777777554
No 320
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=26.91 E-value=6.6 Score=35.19 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=16.4
Q ss_pred ccCCCCeeeeecccccccc
Q 010559 360 RIGAGYRLIDMITEPYRLI 378 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~ 378 (507)
+|++||+|+.|||.++...
T Consensus 53 ~l~~GD~I~~vng~~v~~~ 71 (196)
T 3gsl_A 53 RLRVNDSILFVNEVDVREV 71 (196)
T ss_dssp CCCTTCEEEEETTEECTTC
T ss_pred CCCCCCEEEEECCEECCCC
Confidence 4889999999999998754
No 321
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}
Probab=26.80 E-value=22 Score=36.96 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=19.1
Q ss_pred eeeeeecCchhhhhhhhhhcchhhHH
Q 010559 384 TAILILYGLPRLLTGSILAHEMMHAW 409 (507)
Q Consensus 384 ~~Il~l~glP~~L~gsilaHE~~Haw 409 (507)
.+|+..++...+.+..|+|||++|.+
T Consensus 126 ~gi~~d~~~~~~~~a~t~AHElGHnl 151 (427)
T 2e3x_A 126 VGIVQEQGNRNFKTAVIMAHELSHNL 151 (427)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred eEEEEeCCCccceeeeehHHHHHHhh
Confidence 45666676555666889999999964
No 322
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=26.66 E-value=21 Score=30.07 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=16.8
Q ss_pred Ccccccccccccc---CccccccCCcccc
Q 010559 200 NRPYHKHCYKEQH---HPKCDVCQNFIPT 225 (507)
Q Consensus 200 gk~yCk~CY~~~f---~pkC~~C~~~I~~ 225 (507)
|..||..|....+ ...|..|...|..
T Consensus 71 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 71 QHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp SCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 5567777764432 2378888877765
No 323
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=26.56 E-value=20 Score=28.86 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=31.8
Q ss_pred CccCCCCCcCCCCCceEEccCCceecccccccccCCCCCCccccHHH
Q 010559 253 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 299 (507)
Q Consensus 253 F~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~~~I 299 (507)
+.|..|...+. .......=|..||..|....+.....|--|..++
T Consensus 23 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 67 (99)
T 2y43_A 23 LRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67 (99)
T ss_dssp TBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcC
Confidence 67888887763 3433336789999999987666566777777554
No 324
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=26.39 E-value=10 Score=32.18 Aligned_cols=21 Identities=10% Similarity=0.243 Sum_probs=17.5
Q ss_pred ccCCCCeeeeecccccccccc
Q 010559 360 RIGAGYRLIDMITEPYRLIRR 380 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~~~ 380 (507)
-|.+||+|++||+.++.....
T Consensus 63 GL~~GD~I~~vng~~v~~~~~ 83 (128)
T 1uf1_A 63 GLKVGDQILEVNGRSFLNILH 83 (128)
T ss_dssp TCCTTCEEEEETTEECSSCCH
T ss_pred CCCCCCEEEEECCEECCCCCH
Confidence 478999999999999876543
No 325
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron transfer, Fe reduction, GEO sulfurreducens; HET: HEM; 3.20A {Geobacter sulfurreducens}
Probab=26.24 E-value=23 Score=35.37 Aligned_cols=113 Identities=12% Similarity=0.344 Sum_probs=59.3
Q ss_pred eccCCcccCCCCCCCCCcc-------eeecCCccccccccccc--cC--ccccccCCccccCcccceeec---ccccccc
Q 010559 176 WHPECFRCHSCNLPITDVE-------FSMSGNRPYHKHCYKEQ--HH--PKCDVCQNFIPTNSAGLIEYR---AHPFWLQ 241 (507)
Q Consensus 176 wHp~CF~Cs~C~~~L~~~~-------f~~~~gk~yCk~CY~~~--f~--pkC~~C~~~I~~~~~g~i~~~---~hpfw~~ 241 (507)
.|..=+.|..|...+.... +........|..|.... |. ..|..|.....+.. |.+. +..+|.+
T Consensus 183 ~H~~~~~C~~CH~~~~~~~~g~~~~t~~~~~~~~~C~~CH~~~~~~~~~~~C~~CH~~~~~~~---l~~~~~~g~v~f~H 259 (318)
T 3ov0_A 183 FHLGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHPGLKPAK---LTYKTSVGEAYFDH 259 (318)
T ss_dssp HHHTTCCGGGSTTTSCCSSSCSCCCCHHHHTTTCGGGGTBTTTSBSCSSSCTTTTSSSCCCCC---CCEEETTEEECCCH
T ss_pred eeecceecccccceeeeecccccccchhhhhCCCccccccCCchhccccCChhhhcCCCCCCc---eeEeccCCceEecc
Confidence 4544478999988774322 11123456888887642 32 47999987543221 2222 2222322
Q ss_pred ccCCCccCCCCCccCCCCCcCCC---CCceEEcc--CCceecccccccccCCC--CCCcccc
Q 010559 242 KYCPSHERDGTPRCCSCERMEPR---DTKYLSLD--DGRKLCLECLDSAIMDT--HECQPLY 296 (507)
Q Consensus 242 ~yCp~h~H~~CF~C~~C~~~l~~---g~~y~~l~--dGr~~C~~C~~~~v~~t--~~C~~c~ 296 (507)
.. |..-..|..|...... +...+.+. ..-.+|..|+.....++ ..|..|.
T Consensus 260 ~~-----H~~~~~C~~CH~~~~~~~~~~~~~~m~~~~~~~~C~~CH~~~~af~~~~~C~~CH 316 (318)
T 3ov0_A 260 DI-----HLSMFKCADCHTKVFKYRKGSAPATMADMEKGKSCGVCHNGKDAFSVADDCVKCH 316 (318)
T ss_dssp HH-----HTTTCCTTTSTTTSCCSSSCCCCCCTTHHHHTCGGGGTCSSSSSCCSSSCHHHHE
T ss_pred cc-----ceeeeeeccccccccccccCCCccchhhhhcCCccccccCCcccccccCCHHHhh
Confidence 22 3333678888876532 12222221 12357999997543444 3566554
No 326
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=26.21 E-value=10 Score=31.18 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.4
Q ss_pred cCCCCeeeeecccccccc
Q 010559 361 IGAGYRLIDMITEPYRLI 378 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~~ 378 (507)
|.+||.|+.|||.++...
T Consensus 45 l~~GD~I~~ing~~v~~~ 62 (112)
T 1qau_A 45 IQAGDIILAVNDRPLVDL 62 (112)
T ss_dssp CCTTCEEEEETTEECTTS
T ss_pred CCCCCEEEEECCEECCCC
Confidence 389999999999988763
No 327
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.57 E-value=22 Score=26.23 Aligned_cols=47 Identities=11% Similarity=0.259 Sum_probs=27.7
Q ss_pred cccCCCCC-CCCCcc---eeecCCccccccccccc---cCccccccCCccccCc
Q 010559 181 FRCHSCNL-PITDVE---FSMSGNRPYHKHCYKEQ---HHPKCDVCQNFIPTNS 227 (507)
Q Consensus 181 F~Cs~C~~-~L~~~~---f~~~~gk~yCk~CY~~~---f~pkC~~C~~~I~~~~ 227 (507)
+.|..|.. .+.... ....=|..||..|..+. ...+|..|+..+..+.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 45566655 332221 22345777888887554 2357999998887643
No 328
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=25.51 E-value=28 Score=27.87 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.7
Q ss_pred ccCCCCeeeeeccccccc
Q 010559 360 RIGAGYRLIDMITEPYRL 377 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~ 377 (507)
.|.+||.|+.|||.++..
T Consensus 21 GL~~GD~Il~InG~~v~~ 38 (94)
T 2kl1_A 21 RLEAGDRIAAIDGQPINT 38 (94)
T ss_dssp TBCTTCEEEEETTBCCCC
T ss_pred CCCCCCEEEEECCEECCC
Confidence 488999999999999864
No 329
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=25.46 E-value=8.7 Score=32.51 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=17.0
Q ss_pred CCCCeeeeecccccccccccee
Q 010559 362 GAGYRLIDMITEPYRLIRRCEV 383 (507)
Q Consensus 362 ~~G~rilei~~~p~~~~~~~eV 383 (507)
.+||+|+.|||.++......++
T Consensus 53 ~~GD~I~~ing~~v~~~~~~~~ 74 (127)
T 1b8q_A 53 QAGDIILAVNDRPLVDLSYDSA 74 (127)
T ss_dssp CTTTCCCEETTEECSSSCHHHH
T ss_pred CCCCEEEEECCEECCCCCHHHH
Confidence 8999999999998876433333
No 330
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=24.77 E-value=30 Score=27.21 Aligned_cols=46 Identities=17% Similarity=0.499 Sum_probs=26.6
Q ss_pred cccCCCCCCCCC--cceee-cCCcccccccccccc---CccccccCCccccC
Q 010559 181 FRCHSCNLPITD--VEFSM-SGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 226 (507)
Q Consensus 181 F~Cs~C~~~L~~--~~f~~-~~gk~yCk~CY~~~f---~pkC~~C~~~I~~~ 226 (507)
+.|..|-.++.. ..+.. .=|..||..|+.... ...|..|.+.+...
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 445555555532 12211 146677888875543 45788888888764
No 331
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=24.60 E-value=24 Score=27.67 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=27.3
Q ss_pred CCCccCCCCCcCCCCCceEEccCCceecccccccccCCCCCCccccHHHHHHHhhcCCccccccceEEEe
Q 010559 251 GTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVE 320 (507)
Q Consensus 251 ~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~~~I~~f~e~l~~~i~~~iPv~LVe 320 (507)
.-.+|-.|+..|. +....|.++|..|-. -.+|...||++|++
T Consensus 7 ~iL~CP~ck~~L~-----~~~~~~~LiC~~cg~-----------------------~YPI~dGIPvmL~~ 48 (70)
T 2js4_A 7 DILVCPVCKGRLE-----FQRAQAELVCNADRL-----------------------AFPVRDGVPIMLEA 48 (70)
T ss_dssp CCCBCTTTCCBEE-----EETTTTEEEETTTTE-----------------------EEEEETTEECCCGG
T ss_pred hheECCCCCCcCE-----EeCCCCEEEcCCCCc-----------------------eecCCCCeeeeChh
Confidence 3467777877662 233467888877622 24677889988875
No 332
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=24.33 E-value=22 Score=28.44 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=30.7
Q ss_pred CCccCCCCCcCCCCCceEEccCCceecccccccccCCCCCCccccHH
Q 010559 252 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLE 298 (507)
Q Consensus 252 CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~~~ 298 (507)
-..|..|-..+..+.....+.=|..||..|...-+.....|--|..+
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCcc
Confidence 35677787666555556666677888888887655545566666543
No 333
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=24.15 E-value=31 Score=27.89 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=15.7
Q ss_pred ccCCCCeeeeeccccccc
Q 010559 360 RIGAGYRLIDMITEPYRL 377 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~ 377 (507)
-|.+||.|+.|||+++..
T Consensus 23 GL~~GD~I~~Ing~~v~~ 40 (100)
T 3i18_A 23 VLHAGDLITEIDGNAFKS 40 (100)
T ss_dssp TCCTTCEEEEETTBCCSS
T ss_pred CCCCCCEEEEECCEECCC
Confidence 578999999999999874
No 334
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Probab=24.07 E-value=28 Score=32.38 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=15.0
Q ss_pred eeeeecCchhhhhhhhhhcchhhHH
Q 010559 385 AILILYGLPRLLTGSILAHEMMHAW 409 (507)
Q Consensus 385 ~Il~l~glP~~L~gsilaHE~~Haw 409 (507)
+|...+|+. ++.|+|||++|-+
T Consensus 132 gi~~d~~~~---~a~~~AHElGHnl 153 (217)
T 3b8z_A 132 AVIEDDGLH---AAFTVAHEIGHLL 153 (217)
T ss_dssp EEEECCSSS---HHHHHHHHHHHHT
T ss_pred ceeccCCcc---hhhhhHhhhhhhc
Confidence 444556643 4569999999953
No 335
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=23.88 E-value=7.1 Score=35.63 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=15.5
Q ss_pred cCCCCeeeeeccccccc
Q 010559 361 IGAGYRLIDMITEPYRL 377 (507)
Q Consensus 361 ~~~G~rilei~~~p~~~ 377 (507)
|.+||+|+.|||.++..
T Consensus 55 l~~GD~I~~vng~~v~~ 71 (196)
T 1p1d_A 55 LQIGDRVMAINGIPTED 71 (196)
T ss_dssp CCSSCCEEEETTBCSTT
T ss_pred CCCCCEEEEECCEECCC
Confidence 78999999999999974
No 336
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=23.82 E-value=18 Score=30.54 Aligned_cols=21 Identities=29% Similarity=0.689 Sum_probs=15.9
Q ss_pred cccccCccccccCCccccCcc
Q 010559 208 YKEQHHPKCDVCQNFIPTNSA 228 (507)
Q Consensus 208 Y~~~f~pkC~~C~~~I~~~~~ 228 (507)
|.+.-..+|..|++.|.-+..
T Consensus 20 yAkS~Ra~Ck~C~~kI~Kgel 40 (106)
T 2dmj_A 20 YAKSGRASCKKCSESIPKDSL 40 (106)
T ss_dssp ECCSSCCBCSSSCCBCCTTCE
T ss_pred EeCCCCCcchhhCCccCCCCE
Confidence 555566789999999988653
No 337
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=23.77 E-value=12 Score=33.95 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=16.4
Q ss_pred ccCCCCeeeeeccccccc
Q 010559 360 RIGAGYRLIDMITEPYRL 377 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~ 377 (507)
.|++||+|++|||.++..
T Consensus 63 ~L~~GD~Il~vng~~v~~ 80 (206)
T 3r0h_A 63 RLKIFDHICDINGTPIHV 80 (206)
T ss_dssp CCCTTCEEEEETTEECCG
T ss_pred CCCCCCEEEEECCEEcCC
Confidence 488999999999999887
No 338
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=23.73 E-value=37 Score=28.17 Aligned_cols=70 Identities=19% Similarity=0.510 Sum_probs=38.7
Q ss_pred CcCccCCcccccCceeeecCceeccCCcccCCCCCCCCCc------ceeecCCcccccccccc--ccCccccccCCcccc
Q 010559 154 RICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDV------EFSMSGNRPYHKHCYKE--QHHPKCDVCQNFIPT 225 (507)
Q Consensus 154 ~~C~~C~k~I~~g~~i~alg~~wHp~CF~Cs~C~~~L~~~------~f~~~~gk~yCk~CY~~--~f~pkC~~C~~~I~~ 225 (507)
..|..|.+.+........ .....=+.|..|...+... .....=|..||..|..+ .....|..|...|..
T Consensus 49 ~~CP~Cr~~~~~~~l~~l---~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 49 NTCPTCRKKINHKRYHPI---YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SBCTTTCCBCTTTCEEEC---BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCcccccccc---ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 467778777754333221 1223446677776655431 02224466777777643 234567777777765
Q ss_pred C
Q 010559 226 N 226 (507)
Q Consensus 226 ~ 226 (507)
+
T Consensus 126 ~ 126 (133)
T 4ap4_A 126 K 126 (133)
T ss_dssp G
T ss_pred h
Confidence 4
No 339
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=23.48 E-value=16 Score=29.01 Aligned_cols=42 Identities=19% Similarity=0.474 Sum_probs=23.0
Q ss_pred cccCCCCCCCCCcceeec-CCcccccccccccc----CccccccCCcc
Q 010559 181 FRCHSCNLPITDVEFSMS-GNRPYHKHCYKEQH----HPKCDVCQNFI 223 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~-~gk~yCk~CY~~~f----~pkC~~C~~~I 223 (507)
|.|..|...+.+- .... =|..||..|....+ ...|..|...+
T Consensus 14 ~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 14 LLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TEETTTTEECSSC-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCChhhcCc-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 5666665555432 2223 36677877765432 14566666654
No 340
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=23.23 E-value=31 Score=26.97 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.5
Q ss_pred ccCCCCeeeeeccccccc
Q 010559 360 RIGAGYRLIDMITEPYRL 377 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~ 377 (507)
.|.+||.|+.|||.++..
T Consensus 21 Gl~~GD~I~~ing~~v~~ 38 (91)
T 2zpm_A 21 GLQAGDRIVXVDGQPLTQ 38 (91)
T ss_dssp TCCTTCEEEEETTEECCC
T ss_pred CCCCCCEEEEECCeEcCC
Confidence 477999999999998764
No 341
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.20 E-value=35 Score=25.37 Aligned_cols=44 Identities=23% Similarity=0.523 Sum_probs=32.2
Q ss_pred CCccCCCCCcCCCCCceEEccCCceecccccccccCCCCCCccccHHH
Q 010559 252 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 299 (507)
Q Consensus 252 CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~~~I 299 (507)
-+.|..|...+.. +.+.=|..||..|....+.....|--|..+|
T Consensus 15 ~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 15 EEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58 (70)
T ss_dssp CCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCT
T ss_pred CCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcc
Confidence 4678888776642 5566789999999987666567787777655
No 342
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=23.03 E-value=31 Score=29.74 Aligned_cols=44 Identities=18% Similarity=0.412 Sum_probs=26.8
Q ss_pred CccCCCCCcCCCCCceEEccCCceecccccccccCCCCCCccccHHH
Q 010559 253 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 299 (507)
Q Consensus 253 F~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~~~I 299 (507)
+.|..|...+. .. +.+.=|..||..|....+.....|--|..+|
T Consensus 54 ~~C~iC~~~~~--~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYFI--EA-VTLNCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBCS--SE-EEETTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred CCCcccCcccC--Cc-eECCCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 45666666552 22 3455677888888776555556677776554
No 343
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=23.02 E-value=26 Score=30.98 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=15.9
Q ss_pred Ccccccccccccc---CccccccCCccccC
Q 010559 200 NRPYHKHCYKEQH---HPKCDVCQNFIPTN 226 (507)
Q Consensus 200 gk~yCk~CY~~~f---~pkC~~C~~~I~~~ 226 (507)
|..||..|....+ ...|..|...|...
T Consensus 97 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 97 FHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp SCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4566776654432 23677777776653
No 344
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=23.00 E-value=25 Score=24.69 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=24.8
Q ss_pred CccCCCCCcCCCC-CceEEccCCceecccccccccCCCCCCcccc
Q 010559 253 PRCCSCERMEPRD-TKYLSLDDGRKLCLECLDSAIMDTHECQPLY 296 (507)
Q Consensus 253 F~C~~C~~~l~~g-~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~ 296 (507)
+.|..|...+..+ .....+.=|..||..|..+.+.....|--|.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr 50 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSC
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCC
Confidence 4566776655322 2345555677788888765443334454444
No 345
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=22.96 E-value=25 Score=27.45 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=25.9
Q ss_pred CCccCCCCCcCCCCCceEEccCCceecccccccccCCCCCCccccHHHHHHHhhcCCccccccceEEEe
Q 010559 252 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVE 320 (507)
Q Consensus 252 CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~~~I~~f~e~l~~~i~~~iPv~LVe 320 (507)
-.+|-.|+..|. +....+.++|..|-. -.+|...||++|++
T Consensus 8 iL~CP~ck~~L~-----~~~~~~~LiC~~cg~-----------------------~YPI~dGIPvmL~~ 48 (69)
T 2pk7_A 8 ILACPICKGPLK-----LSADKTELISKGAGL-----------------------AYPIRDGIPVMLES 48 (69)
T ss_dssp TCCCTTTCCCCE-----ECTTSSEEEETTTTE-----------------------EEEEETTEECCCGG
T ss_pred heeCCCCCCcCe-----EeCCCCEEEcCCCCc-----------------------EecCcCCeeeeChh
Confidence 356777776653 223357788877622 24667889988875
No 346
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.60 E-value=18 Score=27.37 Aligned_cols=46 Identities=11% Similarity=0.242 Sum_probs=30.6
Q ss_pred CCccCCCCCcCCCCCceEEccCCceecccccccccCCCCCCccccHHH
Q 010559 252 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 299 (507)
Q Consensus 252 CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~~~I 299 (507)
-+.|..|...+. +......=|..||..|....+.....|--|..+|
T Consensus 15 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 15 YILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp GGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 467888877663 2333336789999999876654456677776544
No 347
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.57 E-value=20 Score=27.83 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=29.9
Q ss_pred CCccCCCCCcCCCCCc-eEEccCCceecccccccccCCC---CCCccccHH
Q 010559 252 TPRCCSCERMEPRDTK-YLSLDDGRKLCLECLDSAIMDT---HECQPLYLE 298 (507)
Q Consensus 252 CF~C~~C~~~l~~g~~-y~~l~dGr~~C~~C~~~~v~~t---~~C~~c~~~ 298 (507)
-+.|..|...+..+.. .+.+.=|..||..|....+... ..|--|..+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKI 65 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCC
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCc
Confidence 4678888877754332 4556678899999987654322 456556543
No 348
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*
Probab=22.38 E-value=31 Score=33.76 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=16.0
Q ss_pred eeeeeecCchhhhhhhhhhcchhhHH
Q 010559 384 TAILILYGLPRLLTGSILAHEMMHAW 409 (507)
Q Consensus 384 ~~Il~l~glP~~L~gsilaHE~~Haw 409 (507)
.+|+..+|+. ++.|+|||++|-+
T Consensus 133 ~gi~~d~~~~---~a~t~AHElGHnl 155 (300)
T 2v4b_A 133 CSVIEDDGLQ---AAFTTAHELGHVF 155 (300)
T ss_dssp EEEEECSSTT---HHHHHHHHHHHHT
T ss_pred CceEcccCcc---ceehhhhhhhhhc
Confidence 3455566653 5669999999954
No 349
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=22.34 E-value=32 Score=27.60 Aligned_cols=19 Identities=16% Similarity=0.003 Sum_probs=16.0
Q ss_pred cccCCCCeeeeeccccccc
Q 010559 359 PRIGAGYRLIDMITEPYRL 377 (507)
Q Consensus 359 ~~~~~G~rilei~~~p~~~ 377 (507)
.-|++||+|+.|||+++..
T Consensus 18 aGl~~GD~I~~ing~~v~~ 36 (95)
T 3id1_A 18 AQIAPGTELKAVDGIETPD 36 (95)
T ss_dssp TTCCTTCEEEEETTEECSS
T ss_pred cCCCCCCEEEEECCEECCC
Confidence 3578999999999998864
No 350
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=21.92 E-value=24 Score=33.90 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=18.1
Q ss_pred eeeeecCchhhh-----hhhhhhcchhhHH
Q 010559 385 AILILYGLPRLL-----TGSILAHEMMHAW 409 (507)
Q Consensus 385 ~Il~l~glP~~L-----~gsilaHE~~Haw 409 (507)
.|++-.||-.+| ..+|||||+.|.-
T Consensus 83 ~I~v~~gLl~~l~~~~ELaaVLaHElgH~~ 112 (253)
T 3c37_A 83 RVYVHTGLLKAADNETELAGVLAHEINHAV 112 (253)
T ss_dssp EEEEEHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred eEEeeHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 455566776665 3789999999963
No 351
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=21.64 E-value=20 Score=30.76 Aligned_cols=20 Identities=20% Similarity=0.679 Sum_probs=15.0
Q ss_pred cccccCccccccCCccccCc
Q 010559 208 YKEQHHPKCDVCQNFIPTNS 227 (507)
Q Consensus 208 Y~~~f~pkC~~C~~~I~~~~ 227 (507)
|.+.-...|..|++.|..+.
T Consensus 15 YAKS~RA~Ck~Ck~kI~Kge 34 (114)
T 1v9x_A 15 YAKSSRSSCKTCKSVINKEN 34 (114)
T ss_dssp ECSCSCCBCSSSCCBCCSSS
T ss_pred EeCCCCCCchhhCCccCCCC
Confidence 45555678999999998764
No 352
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=21.46 E-value=36 Score=28.13 Aligned_cols=45 Identities=16% Similarity=0.314 Sum_probs=30.4
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc---CccccccCCccccC
Q 010559 181 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 226 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f---~pkC~~C~~~I~~~ 226 (507)
|.|..|...+.... ...-|..||..|....+ ...|..|...|...
T Consensus 24 ~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 24 ISCQICEHILADPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp TBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCcHhcCcE-EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 56777766665432 23567888988875532 46899999888764
No 353
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=21.36 E-value=1.4e+02 Score=25.45 Aligned_cols=25 Identities=20% Similarity=0.631 Sum_probs=14.2
Q ss_pred cccccccccc--ccCccccccCCcccc
Q 010559 201 RPYHKHCYKE--QHHPKCDVCQNFIPT 225 (507)
Q Consensus 201 k~yCk~CY~~--~f~pkC~~C~~~I~~ 225 (507)
..||..|... .....|..|...|..
T Consensus 73 H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 73 HSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp CEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3455555432 123568888887765
No 354
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=21.23 E-value=8.1 Score=41.02 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=16.5
Q ss_pred ccCCCCeeeeecccccccc
Q 010559 360 RIGAGYRLIDMITEPYRLI 378 (507)
Q Consensus 360 ~~~~G~rilei~~~p~~~~ 378 (507)
.|++||+|++|||.+++..
T Consensus 40 GL~~GD~Il~VNG~~v~~~ 58 (468)
T 3shw_A 40 GLEEGDQILRVNNVDFTNI 58 (468)
T ss_dssp TCCTTEEEEEETTEECTTC
T ss_pred CCCCCCEEEEECCEECCCC
Confidence 4789999999999998763
No 355
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Probab=21.08 E-value=34 Score=34.66 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=16.0
Q ss_pred eeeeeecCchhhhhhhhhhcchhhHH
Q 010559 384 TAILILYGLPRLLTGSILAHEMMHAW 409 (507)
Q Consensus 384 ~~Il~l~glP~~L~gsilaHE~~Haw 409 (507)
.+|+..+|+ .++.|+|||++|.+
T Consensus 133 ~gv~~d~~~---~~a~~~AHElGHnl 155 (378)
T 2rjq_A 133 CAVIEDDGL---HAAFTVAHEIGHLL 155 (378)
T ss_dssp EEEEECCST---THHHHHHHHHHHHT
T ss_pred cceEcccCc---chhhhhhhhhhhhc
Confidence 345556664 35669999999953
No 356
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A
Probab=20.98 E-value=35 Score=33.71 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=15.3
Q ss_pred eeeeecCchhhhhhhhhhcchhhHH
Q 010559 385 AILILYGLPRLLTGSILAHEMMHAW 409 (507)
Q Consensus 385 ~Il~l~glP~~L~gsilaHE~~Haw 409 (507)
+|+..+|+ .+..|+|||++|-+
T Consensus 134 gv~~d~~~---~~a~t~AHElGHnl 155 (316)
T 2rjp_A 134 AIVEDDGL---QSAFTAAHQLGHVF 155 (316)
T ss_dssp EEEECSST---THHHHHHHHHHHHT
T ss_pred ceEecCCc---hHHHHHHHHHHhhc
Confidence 45555654 45669999999953
No 357
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.91 E-value=21 Score=27.09 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=29.8
Q ss_pred CCCccCCCCCcCCCCCceEEccCCceecccccccccCCCCCCccccH
Q 010559 251 GTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYL 297 (507)
Q Consensus 251 ~CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~~ 297 (507)
.-..|..|-..+..+.....+.=|..||..|....+.....|--|..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~ 68 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRA 68 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCC
Confidence 44668888776655555555666778888887665444445555553
No 358
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=20.85 E-value=37 Score=30.15 Aligned_cols=45 Identities=18% Similarity=0.459 Sum_probs=30.9
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc---CccccccCCccccC
Q 010559 181 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 226 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f---~pkC~~C~~~I~~~ 226 (507)
|.|..|...+... +...-|..||..|..+.+ ..+|..|...|..+
T Consensus 19 ~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 6777777766653 333567888888876643 24888898887764
No 359
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.28 E-value=34 Score=25.69 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=32.0
Q ss_pred CCccCCCCCcCCCCCceEEccCCceecccccccccCCCCCCccccHHH
Q 010559 252 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 299 (507)
Q Consensus 252 CF~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~t~~C~~c~~~I 299 (507)
-+.|..|...+. .. +.+.=|..||..|....+.....|--|..+|
T Consensus 15 ~~~C~IC~~~~~--~~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 15 VPECAICLQTCV--HP-VSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp CCBCSSSSSBCS--SE-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred CCCCccCCcccC--CC-EEccCCCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 467888877663 22 3456789999999987666566777777665
No 360
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A*
Probab=20.14 E-value=41 Score=31.25 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=15.4
Q ss_pred eeeeec-CchhhhhhhhhhcchhhHH
Q 010559 385 AILILY-GLPRLLTGSILAHEMMHAW 409 (507)
Q Consensus 385 ~Il~l~-glP~~L~gsilaHE~~Haw 409 (507)
+|.... +.++ .+..|+|||++|.+
T Consensus 124 gv~~~~~~~~~-~~a~~~AHElGHnl 148 (214)
T 1r55_A 124 GVSTDHSELPI-GAAATMAHEIGHSL 148 (214)
T ss_dssp EEEECCSSSHH-HHHHHHHHHHHHHT
T ss_pred EEEeeCCCchh-HHHHHHHHHHHHhc
Confidence 344443 3443 45789999999964
No 361
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=20.09 E-value=34 Score=28.54 Aligned_cols=45 Identities=18% Similarity=0.459 Sum_probs=28.9
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc---CccccccCCccccC
Q 010559 181 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 226 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f---~pkC~~C~~~I~~~ 226 (507)
|.|..|...+... ....=|..||..|....+ ...|..|...|...
T Consensus 19 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCcCChhhcCe-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 5666666655543 223457788888875532 23899998888764
No 362
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=20.08 E-value=17 Score=31.85 Aligned_cols=43 Identities=16% Similarity=0.416 Sum_probs=30.4
Q ss_pred cccCCCCCCCCCcceeecCCccccccccccccC---ccccccCCccc
Q 010559 181 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH---PKCDVCQNFIP 224 (507)
Q Consensus 181 F~Cs~C~~~L~~~~f~~~~gk~yCk~CY~~~f~---pkC~~C~~~I~ 224 (507)
|.|..|...+... +...-|..||..|..+.+. ..|..|...|.
T Consensus 32 ~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 32 YLCSACRNVLRRP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCCCCChhhcCc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 6788887777653 3345688899999766433 58999988764
No 363
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=20.02 E-value=25 Score=31.11 Aligned_cols=45 Identities=18% Similarity=0.405 Sum_probs=30.7
Q ss_pred CccCCCCCcCCCCCceEEccCCceecccccccccCC-CCCCccccHHH
Q 010559 253 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMD-THECQPLYLEI 299 (507)
Q Consensus 253 F~C~~C~~~l~~g~~y~~l~dGr~~C~~C~~~~v~~-t~~C~~c~~~I 299 (507)
+.|..|...+. .......=|..||..|....+.. ...|--|..+|
T Consensus 55 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 67888887763 34444467899999999876554 45577776544
Done!