Query 010560
Match_columns 507
No_of_seqs 189 out of 1157
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 09:26:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dx5_A Acriflavine resistance 32.5 2.1E+02 0.0073 32.8 11.4 20 117-136 971-990 (1057)
2 2knc_A Integrin alpha-IIB; tra 13.8 1.9E+02 0.0064 21.7 3.8 15 382-396 6-20 (54)
3 3tj6_B Protein PS 120; cytoske 13.0 98 0.0034 19.3 1.6 14 350-363 6-19 (23)
4 3l1l_A Arginine/agmatine antip 10.3 6.4E+02 0.022 24.8 7.9 9 103-111 372-380 (445)
5 3arc_J Photosystem II reaction 10.3 2.5E+02 0.0087 19.8 3.2 24 384-407 6-32 (40)
6 2v50_A Multidrug resistance pr 9.2 1.7E+03 0.058 25.3 11.8 57 117-175 969-1025(1052)
7 2gsm_B Cytochrome C oxidase su 8.3 7.2E+02 0.025 23.9 7.0 27 111-137 74-100 (262)
8 2w2e_A AQY1, aquaporin, aquapo 7.5 2.1E+02 0.0073 28.0 2.8 30 83-112 245-274 (279)
9 3iyz_A Aquaporin-4; water tran 7.0 6.9E+02 0.024 25.2 6.3 19 83-101 250-268 (340)
10 2k1k_A Ephrin type-A receptor 6.8 4E+02 0.014 18.3 3.1 11 151-161 13-23 (38)
No 1
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=32.48 E-value=2.1e+02 Score=32.80 Aligned_cols=20 Identities=15% Similarity=0.026 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010560 117 IFFPVDYGLSAGLLCLFLVY 136 (507)
Q Consensus 117 ~~lPi~~~it~~i~~~~Iv~ 136 (507)
+.-|+++.....+..|.-+.
T Consensus 971 ~~rpil~t~ltt~~g~~pl~ 990 (1057)
T 4dx5_A 971 RLRPILMTSLAFILGVMPLV 990 (1057)
T ss_dssp HHHHHHHHHHHHHHHTHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHH
Confidence 36788876666666655443
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=13.84 E-value=1.9e+02 Score=21.72 Aligned_cols=15 Identities=20% Similarity=0.570 Sum_probs=10.2
Q ss_pred cccchhHHHHHHHHH
Q 010560 382 DSIDVSWWFRALGGL 396 (507)
Q Consensus 382 ~~~~vp~wil~~gg~ 396 (507)
....+|+|+.+++.+
T Consensus 6 ~~~~vp~wiIi~svl 20 (54)
T 2knc_A 6 EERAIPIWWVLVGVL 20 (54)
T ss_dssp TTTTCCHHHHHHHHH
T ss_pred cCCCcchHHHHHHHH
Confidence 344789998876443
No 3
>3tj6_B Protein PS 120; cytoskeleton, epidemic typhus, SCA4, spotted fever, alpha-HE bundle domain, protein-protein interactions, cell adhesion; 2.76A {Rickettsia rickettsii}
Probab=13.00 E-value=98 Score=19.32 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=11.3
Q ss_pred hhhhhhhhHHHHHH
Q 010560 350 SVSEIAAIVSPYGA 363 (507)
Q Consensus 350 GaNDvanaigp~~~ 363 (507)
-+.|++||++++.-
T Consensus 6 kaqdv~~AL~nvi~ 19 (23)
T 3tj6_B 6 KAREVINAVNPVIE 19 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47899999998754
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=10.31 E-value=6.4e+02 Score=24.82 Aligned_cols=9 Identities=33% Similarity=0.571 Sum_probs=5.8
Q ss_pred HhhcccccH
Q 010560 103 VLILRHKNA 111 (507)
Q Consensus 103 ~~IL~r~np 111 (507)
...+|+++|
T Consensus 372 ~~~~r~~~~ 380 (445)
T 3l1l_A 372 LLLLGHGHF 380 (445)
T ss_dssp HHHHHSSSS
T ss_pred HHHHhhcCc
Confidence 455677777
No 5
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=10.26 E-value=2.5e+02 Score=19.76 Aligned_cols=24 Identities=25% Similarity=0.663 Sum_probs=15.3
Q ss_pred cchhHHHHHH-HHHHH--HHHHHhhhh
Q 010560 384 IDVSWWFRAL-GGLGA--VMGFILCGW 407 (507)
Q Consensus 384 ~~vp~wil~~-gg~~i--~~G~~~~G~ 407 (507)
..+|+|+... +|++. .+|+.+||.
T Consensus 6 GRiPLWlvgtv~G~~vi~~~giFfyGs 32 (40)
T 3arc_J 6 GRIPLWIVATVAGMGVIVIVGLFFYGA 32 (40)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccEEeeeeehhhhhhheeeEEEeec
Confidence 3689997643 44443 567777774
No 6
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=9.22 E-value=1.7e+03 Score=25.28 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHhhhhhhhheee
Q 010560 117 IFFPVDYGLSAGLLCLFLVYRVRGHLVHIPRWVTIAAVALATFIGAVLPLVVIVPLATK 175 (507)
Q Consensus 117 ~~lPi~~~it~~i~~~~Iv~kg~~~~~~~~~w~~~~~~~v~~~i~~~l~~~~~vP~i~~ 175 (507)
+.-|+++.....+..|.-+.-+... .-+.+..+..+..++++.+.+..++++|-+..
T Consensus 969 ~~rpil~t~~tt~~g~~pl~~~~~~--g~~~~~~~~~~~~~Gl~~s~~~~l~~~P~l~~ 1025 (1052)
T 2v50_A 969 RLRPIVMTSLAFILGVVPLAISTGA--GSGSQHAIGTGVIGGMVTATVLAIFWVPLFYV 1025 (1052)
T ss_dssp HHHHHHHHHHHHHTTSHHHHTCCST--TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCC--ChhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777655555444333222110 11223333322222233333334566886643
No 7
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=8.31 E-value=7.2e+02 Score=23.90 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010560 111 ARERILIFFPVDYGLSAGLLCLFLVYR 137 (507)
Q Consensus 111 p~~~al~~lPi~~~it~~i~~~~Iv~k 137 (507)
+++.....+|++..+.+++-++-++|+
T Consensus 74 ~lEiiWTiiP~iILi~la~pS~~~ly~ 100 (262)
T 2gsm_B 74 PLEIAWTIVPIVILVAIGAFSLPVLFN 100 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666655555555544
No 8
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=7.48 E-value=2.1e+02 Score=27.95 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=21.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhcccccHH
Q 010560 83 WTVAPLFACMCACFLFILLKVLILRHKNAR 112 (507)
Q Consensus 83 W~isP~lsg~~~~~lf~lir~~IL~r~np~ 112 (507)
+.+.|++++++++++|.+++..=....||-
T Consensus 245 y~vgPiiGa~la~~ly~~l~~~~~~~~~p~ 274 (279)
T 2w2e_A 245 YWLGPILGAFLAYSIWQMWKWLNYQTTNPG 274 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCcCCCC
Confidence 468999999999999988765433334443
No 9
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=6.98 E-value=6.9e+02 Score=25.20 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=16.0
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 010560 83 WTVAPLFACMCACFLFILL 101 (507)
Q Consensus 83 W~isP~lsg~~~~~lf~li 101 (507)
..+.|++++++++++|.++
T Consensus 250 ywvgPiiGailaallY~~l 268 (340)
T 3iyz_A 250 YWVGPIIGAVLAGALYEYV 268 (340)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3489999999999998664
No 10
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=6.83 E-value=4e+02 Score=18.29 Aligned_cols=11 Identities=36% Similarity=0.658 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 010560 151 IAAVALATFIG 161 (507)
Q Consensus 151 ~~~~~v~~~i~ 161 (507)
+....++.+++
T Consensus 13 IAGiVvG~v~g 23 (38)
T 2k1k_A 13 IVAVIFGLLLG 23 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred eeeeehHHHHH
Confidence 44444444443
Done!