Query 010560
Match_columns 507
No_of_seqs 189 out of 1157
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 09:26:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010560.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010560hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 29.0 71 0.0051 24.3 6.9 59 80-138 31-97 (100)
2 d1iwga8 f.35.1.1 (A:513-566,A: 28.0 1.5E+02 0.011 25.4 9.9 54 118-173 158-211 (222)
3 d3ehbb2 f.17.2.1 (B:1-107) Bac 24.6 80 0.0059 24.4 6.6 59 80-138 37-103 (107)
4 d2axtj1 f.23.32.1 (J:7-40) Pho 15.8 55 0.004 20.6 2.7 22 386-407 2-26 (34)
5 d1mkma1 a.4.5.33 (A:1-75) Tran 12.4 27 0.002 25.3 0.6 32 28-59 25-56 (75)
6 d1q90l_ f.23.24.1 (L:) PetL su 7.1 82 0.006 19.1 1.2 20 391-410 10-29 (32)
7 d2axth1 f.23.33.1 (H:2-65) Pho 5.9 2E+02 0.015 20.3 3.1 23 75-97 16-38 (64)
8 d1nekd_ f.21.2.2 (D:) Succinat 5.3 5.5E+02 0.04 19.1 5.9 13 82-94 48-60 (113)
9 d1ymga1 f.19.1.1 (A:6-239) Aqu 4.6 8.6E+02 0.063 20.1 8.6 12 43-54 89-100 (234)
10 d1rh5b_ f.23.28.1 (B:) Preprot 4.2 4.1E+02 0.03 18.2 3.7 36 467-502 17-52 (56)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=28.96 E-value=71 Score=24.30 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=40.5
Q ss_pred eeehhhhhhHHHHHHHHHHHHHHHhhccc--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010560 80 FLEWTVAPLFACMCACFLFILLKVLILRH--------KNARERILIFFPVDYGLSAGLLCLFLVYRV 138 (507)
Q Consensus 80 ~~sW~isP~lsg~~~~~lf~lir~~IL~r--------~np~~~al~~lPi~~~it~~i~~~~Iv~kg 138 (507)
..-|+...+...+.+..+|.+.|+.--+. .+++|-..-++|.+..+.+++-++-++|.-
T Consensus 31 ~v~~i~~~I~~~V~~~l~~~~~~~r~~~~~~~~~~~~n~~LEiiWTviP~lILi~l~~pS~~~ly~m 97 (100)
T d3dtub2 31 FILVIIAAITIFVTLLILYAVWRFHEKRNKVPARFTHNSPLEIAWTIVPIVILVAIGAFSLPVLFNQ 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTTCCSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777776643221 125777888999999888888887777653
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=27.95 E-value=1.5e+02 Score=25.36 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHhhhhhhhhe
Q 010560 118 FFPVDYGLSAGLLCLFLVYRVRGHLVHIPRWVTIAAVALATFIGAVLPLVVIVPLA 173 (507)
Q Consensus 118 ~lPi~~~it~~i~~~~Iv~kg~~~~~~~~~w~~~~~~~v~~~i~~~l~~~~~vP~i 173 (507)
.-|++......+..|.-+.-.... .-+.+..+......+.+.+.+..++++|-+
T Consensus 158 ~~~i~~t~ltti~gf~pl~~~~~~--g~~~~~~la~~v~~Gll~s~~~~l~~~Pal 211 (222)
T d1iwga8 158 LRPILMTSLAFILGVMPLVISTGA--GSGAQNAVGTGVMGGMVTATVLAIFFVPVF 211 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSS--SCHHHHHHHHHHHHHHHHHHTTTTSSSSSS
T ss_pred hhhhhhhHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568887766666555433222111 111233333333333333444445668865
No 3
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=24.56 E-value=80 Score=24.36 Aligned_cols=59 Identities=19% Similarity=0.361 Sum_probs=40.8
Q ss_pred eeehhhhhhHHHHHHHHHHHHHHHhhcc--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010560 80 FLEWTVAPLFACMCACFLFILLKVLILR--------HKNARERILIFFPVDYGLSAGLLCLFLVYRV 138 (507)
Q Consensus 80 ~~sW~isP~lsg~~~~~lf~lir~~IL~--------r~np~~~al~~lPi~~~it~~i~~~~Iv~kg 138 (507)
..-|++..+...+.+..+|.++|+.--+ ..+.+|-..-++|.+..+.+++-++-++|.-
T Consensus 37 ~v~~i~~~I~~~V~~~~~~~~~~~r~~~~~~~~~~~~n~~lEi~WTviP~lIL~~laipSl~~Ly~m 103 (107)
T d3ehbb2 37 FVLYIITAVTIFVCLLLLICIVRFNRRANPVPARFTHNTPIEVIWTLVPVLILVAIGAFSLPILFRS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSBTTTSSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777777777777777777653111 1134677777899999999888888777764
No 4
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.85 E-value=55 Score=20.62 Aligned_cols=22 Identities=27% Similarity=0.842 Sum_probs=14.6
Q ss_pred hhHHHHH-HHHHHH--HHHHHhhhh
Q 010560 386 VSWWFRA-LGGLGA--VMGFILCGW 407 (507)
Q Consensus 386 vp~wil~-~gg~~i--~~G~~~~G~ 407 (507)
+|+|+.. ++|++. .+|+.+||.
T Consensus 2 iPLWlv~tv~G~~vi~~vG~FfYGs 26 (34)
T d2axtj1 2 IPLWIVATVAGMGVIVIVGLFFYGA 26 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcEEEeeehhhhhhHhheeeeeeee
Confidence 6888765 355443 678888874
No 5
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=12.38 E-value=27 Score=25.35 Aligned_cols=32 Identities=25% Similarity=0.135 Sum_probs=28.0
Q ss_pred HHHhhcCCCCcchhhhhHHHHHHHHHhccCcc
Q 010560 28 VIATYFELPVSPQQATQAALLGSMLVTEGFDY 59 (507)
Q Consensus 28 ~~AT~~~lPVStTHsivGaiiG~~lva~G~~~ 59 (507)
-+|..+++|-||+|-++-.+.--|++.+..++
T Consensus 25 eia~~~~~~~st~~rll~tL~~~g~l~~~~~g 56 (75)
T d1mkma1 25 EIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDK 56 (75)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSEEECTTS
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEECCCC
Confidence 37899999999999999999999998876543
No 6
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.09 E-value=82 Score=19.14 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhhhHHH
Q 010560 391 RALGGLGAVMGFILCGWKLT 410 (507)
Q Consensus 391 l~~gg~~i~~G~~~~G~rVi 410 (507)
+++|+++..+|+.++=.+|.
T Consensus 10 lligal~~tlgiylgllkvv 29 (32)
T d1q90l_ 10 LLIGALVFTLGIYLGLLKVV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67788888888877655554
No 7
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.90 E-value=2e+02 Score=20.34 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=18.6
Q ss_pred CceeeeeehhhhhhHHHHHHHHH
Q 010560 75 GLLWIFLEWTVAPLFACMCACFL 97 (507)
Q Consensus 75 g~~~I~~sW~isP~lsg~~~~~l 97 (507)
+-++.+-.|-.+|+++.+++.+.
T Consensus 16 eyGKVaPGWGTTplMgv~m~Lf~ 38 (64)
T d2axth1 16 EYGKVAPGWGTTPLMAVFMGLFL 38 (64)
T ss_dssp CSSCCCSTTTTHHHHHHHHHHHH
T ss_pred ccCcccCCcCccHHHHHHHHHHH
Confidence 45788999999999998876544
No 8
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=5.25 E-value=5.5e+02 Score=19.09 Aligned_cols=13 Identities=0% Similarity=0.038 Sum_probs=5.1
Q ss_pred ehhhhhhHHHHHH
Q 010560 82 EWTVAPLFACMCA 94 (507)
Q Consensus 82 sW~isP~lsg~~~ 94 (507)
+|+-+|...-+..
T Consensus 48 ~~~~~~~~~il~~ 60 (113)
T d1nekd_ 48 GFFASAFTKVFTL 60 (113)
T ss_dssp HHHSSHHHHHHHH
T ss_pred HHHhChHHHHHHH
Confidence 3444444333333
No 9
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.57 E-value=8.6e+02 Score=20.12 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHh
Q 010560 43 TQAALLGSMLVT 54 (507)
Q Consensus 43 ivGaiiG~~lva 54 (507)
++||++|..++.
T Consensus 89 ~lGa~~ga~l~~ 100 (234)
T d1ymga1 89 LLGAVAGAAVLY 100 (234)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 788888888764
No 10
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.19 E-value=4.1e+02 Score=18.19 Aligned_cols=36 Identities=6% Similarity=-0.112 Sum_probs=28.5
Q ss_pred ccchHHHHHHhHHhhhhHHHHHHHHHHHHHHHhhcC
Q 010560 467 NVNWKLLFKFICGWVMTIIFCCGAAFAIFYASVHAP 502 (507)
Q Consensus 467 ~V~w~~~~~I~~~WiiT~p~a~~~s~~l~~~~~~aP 502 (507)
.=+|+.+.+|...=-+.+.+-+.++++++.+..+-|
T Consensus 17 KP~~~Ef~~ia~v~~iG~~i~G~IGf~I~li~~~i~ 52 (56)
T d1rh5b_ 17 KPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIK 52 (56)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346889999988888888888888998888776544
Done!