BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010561
(507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
Length = 460
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 81/436 (18%), Positives = 165/436 (37%), Gaps = 22/436 (5%)
Query: 44 QRIKKATWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVF 103
R KK E NL +LA P ++ + + I G + +++AAVS+ + ++
Sbjct: 5 HRYKK----EASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAAS---IW 57
Query: 104 AYGLMLGMG--SATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILL 161
++ G+G A + Q GA + + + + ++ +P++ + ++ I+
Sbjct: 58 LPSILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIR 117
Query: 162 LLGEXXXXXXXXXXFVFGLIPQIFAYAVNFPIQKFLQXXXXXXXXXXXXXXTLVVHVLLS 221
+ ++ +I + AY + ++ F L++++ L+
Sbjct: 118 FMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLN 177
Query: 222 WVAIFKXXXXXXXXXXXXXXXXXII----VAAQFVYILLSERCK--KTWTGFSLQAFSGL 275
W+ ++ I+ + YI+ S+R K + F L
Sbjct: 178 WIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKEL 237
Query: 276 WDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNA 335
+L A L E+ + ++ L+ L + V+ + + + + VFM + A
Sbjct: 238 IRLFRLGFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVALNFSSLVFMFPMSIGA 295
Query: 336 AASVRVGNELGAAHPKSCKFXXXXXXXXXXXXXXXXXXXXXXXRNVMSYAFTGGSTVADS 395
A S+RVG++LG K R ++ +T V
Sbjct: 296 AVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVAL 355
Query: 396 VAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGF----- 450
+L F A+ ++ +Q V +G G + + Y+++G+P G +LG
Sbjct: 356 AMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLT 415
Query: 451 KFNLGTKGIWSGMIGG 466
+ LG KG W G I G
Sbjct: 416 EQPLGAKGFWLGFIIG 431
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
Monobody
pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
Length = 459
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/179 (18%), Positives = 70/179 (39%), Gaps = 3/179 (1%)
Query: 298 IIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFXX 357
I+ LIA E + + + ++++G ++MI +A +VR+G LG ++
Sbjct: 264 IVFLIAPF---GEDYVAAQQVGISLSGILYMIPQSVGSAGTVRIGFSLGRREFSRARYIS 320
Query: 358 XXXXXXXXXXXXXXXXXXXXXRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLS 417
R+ ++ + V + + F L + Q + S
Sbjct: 321 GVSLVSGWVLAVITVLSLVLFRSPLASMYNDDPAVLSIASTVLLFAGLFQPADFTQCIAS 380
Query: 418 GVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVY 476
G +++ ++ G+ G LL ++F++G G W+ +I I + LV+
Sbjct: 381 YALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAYRFDMGIYGFWTALIASLTIAAVALVW 439
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 53 ELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMG 112
E++ L LA P +L + + + G G +LAAV+LG++ Y +G+
Sbjct: 12 EIRLLTALALPMLLAQVAQVGIGFVDTVMAGGAGKEDLAAVALGSSAFAT-VYITFMGIM 70
Query: 113 SATETLCGQAYGAQK 127
+A + Q YGA K
Sbjct: 71 AALNPMIAQLYGAGK 85
>pdb|3HWC|A Chain A, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
pdb|3HWC|B Chain B, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
pdb|3HWC|C Chain C, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
pdb|3HWC|D Chain D, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
Length = 515
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 13/57 (22%)
Query: 393 ADSVAELSPFLAL------SVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIP 443
+D+ SP L + +I+NG++ V +G+A G Y+++GC Y GIP
Sbjct: 162 SDAAQARSPNLRIVEKTDDGIIVNGVKAVGTGIAFG-------DYMHIGCLYRPGIP 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,242,003
Number of Sequences: 62578
Number of extensions: 363850
Number of successful extensions: 868
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 858
Number of HSP's gapped (non-prelim): 6
length of query: 507
length of database: 14,973,337
effective HSP length: 103
effective length of query: 404
effective length of database: 8,527,803
effective search space: 3445232412
effective search space used: 3445232412
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)