Query 010561
Match_columns 507
No_of_seqs 265 out of 2166
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 01:58:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 5.7E-56 1.2E-60 442.1 55.7 437 50-490 12-452 (455)
2 PRK10189 MATE family multidrug 100.0 2.4E-52 5.3E-57 420.1 57.8 433 51-486 25-467 (478)
3 PRK00187 multidrug efflux prot 100.0 2.5E-51 5.5E-56 412.8 57.0 428 50-480 5-443 (464)
4 PRK10367 DNA-damage-inducible 100.0 8.7E-49 1.9E-53 390.7 54.7 424 51-485 5-434 (441)
5 PRK01766 multidrug efflux prot 100.0 1.7E-48 3.7E-53 393.8 56.4 433 50-485 7-446 (456)
6 PRK09575 vmrA multidrug efflux 100.0 2E-48 4.4E-53 391.3 53.8 424 51-480 8-435 (453)
7 TIGR01695 mviN integral membra 100.0 1.6E-35 3.4E-40 304.0 52.6 413 57-481 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 1.1E-35 2.5E-40 304.0 49.2 414 58-480 2-433 (488)
9 TIGR00797 matE putative efflux 100.0 8E-36 1.7E-40 290.8 43.6 338 63-403 1-341 (342)
10 KOG1347 Uncharacterized membra 100.0 5.3E-37 1.2E-41 303.0 34.1 449 51-501 24-472 (473)
11 PRK15099 O-antigen translocase 100.0 4.7E-34 1E-38 285.2 46.6 405 57-480 3-411 (416)
12 PF03023 MVIN: MviN-like prote 100.0 1E-27 2.2E-32 239.6 51.6 386 85-481 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 2.7E-26 5.8E-31 224.9 51.6 420 55-482 7-438 (518)
14 PRK10459 colanic acid exporter 100.0 1.8E-26 3.9E-31 235.9 47.7 398 54-480 4-404 (492)
15 COG2244 RfbX Membrane protein 100.0 2.1E-24 4.5E-29 220.2 42.2 390 53-465 4-396 (480)
16 PRK00187 multidrug efflux prot 99.9 9.9E-21 2.2E-25 190.9 27.3 208 48-256 229-443 (464)
17 COG0534 NorM Na+-driven multid 99.9 3.3E-20 7.2E-25 185.5 27.8 208 273-483 14-223 (455)
18 PRK10367 DNA-damage-inducible 99.9 7.7E-20 1.7E-24 182.8 28.2 206 273-480 6-211 (441)
19 PRK10189 MATE family multidrug 99.9 5.6E-20 1.2E-24 185.6 27.3 205 273-480 26-236 (478)
20 PRK01766 multidrug efflux prot 99.9 1.2E-19 2.6E-24 183.6 28.9 208 272-482 8-219 (456)
21 PRK09575 vmrA multidrug efflux 99.9 1.2E-19 2.6E-24 182.8 26.8 205 273-480 9-214 (453)
22 TIGR01695 mviN integral membra 99.8 9.4E-17 2E-21 165.0 33.0 206 50-257 218-428 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 2.7E-15 5.8E-20 141.2 34.0 270 58-344 2-272 (273)
24 TIGR00797 matE putative efflux 99.8 3.5E-16 7.7E-21 152.4 26.7 194 284-480 1-196 (342)
25 PF01554 MatE: MatE; InterPro 99.7 6.1E-18 1.3E-22 145.9 7.8 162 284-447 1-162 (162)
26 PF03023 MVIN: MviN-like prote 99.7 2.6E-14 5.7E-19 143.2 32.5 205 51-257 194-403 (451)
27 TIGR02900 spore_V_B stage V sp 99.7 1.9E-15 4.2E-20 154.7 24.3 204 49-257 219-434 (488)
28 PF01554 MatE: MatE; InterPro 99.7 9.7E-18 2.1E-22 144.6 5.9 160 63-223 1-162 (162)
29 COG0728 MviN Uncharacterized m 99.7 1.9E-13 4E-18 135.0 33.9 204 52-257 229-437 (518)
30 PRK15099 O-antigen translocase 99.7 3.6E-14 7.7E-19 142.0 26.3 202 48-256 208-411 (416)
31 PRK10459 colanic acid exporter 99.6 7.9E-13 1.7E-17 135.4 34.2 201 50-256 202-404 (492)
32 PF13440 Polysacc_synt_3: Poly 99.6 6.2E-12 1.3E-16 116.8 32.3 246 74-343 3-250 (251)
33 COG2244 RfbX Membrane protein 99.5 2.9E-12 6.2E-17 131.0 26.8 187 50-242 208-396 (480)
34 PF04506 Rft-1: Rft protein; 99.4 5.7E-09 1.2E-13 105.6 34.2 420 59-480 5-469 (549)
35 KOG2864 Nuclear division RFT1 99.3 1.2E-07 2.5E-12 89.8 35.3 411 56-481 9-449 (530)
36 KOG1347 Uncharacterized membra 99.2 8.9E-10 1.9E-14 109.9 20.7 205 272-480 24-229 (473)
37 PF07260 ANKH: Progressive ank 99.1 6E-07 1.3E-11 81.5 29.7 269 52-329 8-292 (345)
38 PF04506 Rft-1: Rft protein; 98.5 3E-05 6.5E-10 78.9 21.8 203 54-257 252-470 (549)
39 PF14667 Polysacc_synt_C: Poly 98.4 4.5E-05 9.8E-10 64.0 18.1 79 177-257 2-80 (146)
40 PF01943 Polysacc_synt: Polysa 98.1 0.001 2.3E-08 62.1 21.9 186 280-480 3-190 (273)
41 PF14667 Polysacc_synt_C: Poly 98.0 3.3E-05 7.3E-10 64.8 9.3 78 400-480 2-79 (146)
42 PF07260 ANKH: Progressive ank 98.0 0.0042 9.1E-08 57.1 22.5 159 273-437 8-169 (345)
43 COG4267 Predicted membrane pro 98.0 0.015 3.2E-07 54.6 33.9 336 103-466 72-431 (467)
44 KOG2864 Nuclear division RFT1 97.9 0.0015 3.2E-08 62.7 18.7 198 57-256 241-448 (530)
45 PF13440 Polysacc_synt_3: Poly 97.7 0.019 4.2E-07 52.8 22.1 162 300-479 9-171 (251)
46 COG4267 Predicted membrane pro 84.5 41 0.00088 32.5 19.3 136 328-480 75-210 (467)
47 PF05975 EcsB: Bacterial ABC t 76.2 84 0.0018 31.0 17.4 38 349-386 89-126 (386)
48 PF04505 Dispanin: Interferon- 60.4 55 0.0012 24.0 6.8 40 331-370 34-73 (82)
49 TIGR00822 EII-Sor PTS system, 58.0 1.6E+02 0.0034 27.3 17.3 32 326-357 109-140 (265)
50 KOG2533 Permease of the major 55.8 2.5E+02 0.0054 28.9 33.3 63 188-250 154-220 (495)
51 PF10160 Tmemb_40: Predicted m 50.7 2E+02 0.0044 26.3 10.9 100 328-430 89-188 (261)
52 PRK09757 PTS system N-acetylga 47.4 2.4E+02 0.0052 26.2 15.9 33 326-358 110-142 (267)
53 PLN00028 nitrate transmembrane 47.1 3.2E+02 0.007 27.7 33.6 33 456-489 411-443 (476)
54 PF11457 DUF3021: Protein of u 45.9 1.6E+02 0.0035 23.8 15.8 19 475-493 117-135 (136)
55 COG0598 CorA Mg2+ and Co2+ tra 43.4 2.4E+02 0.0052 27.0 10.1 74 406-483 240-321 (322)
56 PF06963 FPN1: Ferroportin1 (F 41.2 3.9E+02 0.0084 26.9 16.8 54 310-373 37-90 (432)
57 TIGR00383 corA magnesium Mg(2+ 40.2 85 0.0019 29.9 6.6 59 423-483 252-317 (318)
58 PF03547 Mem_trans: Membrane t 39.0 2.7E+02 0.0058 27.3 10.1 18 359-376 32-49 (385)
59 KOG2532 Permease of the major 38.3 2.3E+02 0.005 28.8 9.5 80 400-480 137-218 (466)
60 PRK09546 zntB zinc transporter 37.9 3.7E+02 0.008 25.7 10.8 51 431-483 266-323 (324)
61 PF10337 DUF2422: Protein of u 37.1 4.6E+02 0.01 26.6 13.1 28 49-76 11-38 (459)
62 TIGR03141 cytochro_ccmD heme e 36.3 1E+02 0.0022 19.6 4.3 15 459-473 8-22 (45)
63 COG2211 MelB Na+/melibiose sym 34.2 5.2E+02 0.011 26.3 31.3 49 53-101 10-61 (467)
64 PRK14472 F0F1 ATP synthase sub 33.3 55 0.0012 28.1 3.7 41 455-495 12-52 (175)
65 PRK11085 magnesium/nickel/coba 33.2 1.5E+02 0.0033 28.3 6.9 59 423-483 250-315 (316)
66 TIGR00881 2A0104 phosphoglycer 32.7 4.4E+02 0.0095 25.0 11.1 16 333-348 45-60 (379)
67 PF04995 CcmD: Heme exporter p 32.6 1.3E+02 0.0029 19.1 4.5 31 459-489 7-38 (46)
68 TIGR03727 urea_t_UrtC_arc urea 31.8 5E+02 0.011 25.4 10.6 24 484-507 341-364 (364)
69 PRK01637 hypothetical protein; 30.2 4.6E+02 0.01 24.5 19.3 10 339-348 114-123 (286)
70 CHL00118 atpG ATP synthase CF0 30.1 1.2E+02 0.0025 25.5 5.0 33 463-495 24-56 (156)
71 PF00558 Vpu: Vpu protein; In 29.1 94 0.002 22.7 3.5 19 476-494 28-46 (81)
72 PF11446 DUF2897: Protein of u 28.6 57 0.0012 21.8 2.2 21 460-480 8-28 (55)
73 PRK08476 F0F1 ATP synthase sub 28.3 92 0.002 25.6 4.0 34 462-495 8-41 (141)
74 PF03904 DUF334: Domain of unk 27.8 3.5E+02 0.0075 24.2 7.4 38 127-164 142-179 (230)
75 PF12794 MscS_TM: Mechanosensi 26.9 5.9E+02 0.013 24.6 22.7 29 350-378 118-146 (340)
76 PRK08475 F0F1 ATP synthase sub 26.2 1.6E+02 0.0034 25.1 5.2 34 462-495 23-56 (167)
77 PRK06569 F0F1 ATP synthase sub 25.5 1.2E+02 0.0027 25.4 4.2 36 461-496 10-45 (155)
78 PF08627 CRT-like: CRT-like; 25.5 3.6E+02 0.0077 21.7 7.0 29 56-84 50-78 (130)
79 PRK09174 F0F1 ATP synthase sub 25.3 86 0.0019 27.7 3.5 34 462-495 54-87 (204)
80 PF12606 RELT: Tumour necrosis 23.7 52 0.0011 21.5 1.3 15 475-489 21-35 (50)
81 PF12597 DUF3767: Protein of u 23.1 3.1E+02 0.0068 21.8 5.9 11 427-437 41-51 (118)
82 PRK13454 F0F1 ATP synthase sub 23.1 1.1E+02 0.0023 26.5 3.7 33 463-495 33-65 (181)
83 COG5393 Predicted membrane pro 22.3 4E+02 0.0086 21.0 6.8 30 453-482 79-108 (131)
84 PRK10929 putative mechanosensi 21.9 1.3E+03 0.027 26.7 19.7 27 350-377 592-618 (1109)
85 PRK13453 F0F1 ATP synthase sub 21.1 1.2E+02 0.0025 26.0 3.5 33 462-494 19-51 (173)
86 PRK13460 F0F1 ATP synthase sub 20.6 1.5E+02 0.0032 25.4 4.0 33 462-494 17-49 (173)
87 PTZ00370 STEVOR; Provisional 20.4 2.1E+02 0.0046 26.6 5.0 17 473-489 274-292 (296)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=5.7e-56 Score=442.13 Aligned_cols=437 Identities=26% Similarity=0.403 Sum_probs=411.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 010561 50 TWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYD 129 (507)
Q Consensus 50 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 129 (507)
.++..|+++++++|.+++++++.+++.+|++++||+|++++++.+++.++.. +...+..|++.|.++.++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~-~~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFF-LIIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 4568899999999999999999999999999999999999999999999999 888899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHH
Q 010561 130 MLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAY 208 (507)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (507)
++++..++++.++++++++..++ +.+.++++.+++.++++.+.+.+|+++..++.++..+..++.+.+|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999887776 99999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-cC-CccchhHHHHHHHHHHHHHHHHHHHHhccc-cccccCCCCHHhhhhhHHHHHHHHHH
Q 010561 209 ISAATLVVHVLLSWVAIFK-LG-WGLLGASLVLSLSWWIIVAAQFVYILLSER-CKKTWTGFSLQAFSGLWDFLKLSTAS 285 (507)
Q Consensus 209 ~~i~~~~~~i~l~~~li~~-~~-~g~~g~~~a~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~p~ 285 (507)
.++++.++|+++|++++++ ++ +|+.|+++||++++.+..++..++.+++++ ......+..+.+++.+|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 57 999999999999999999999999988753 22222233233447799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHH
Q 010561 286 AVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISL 365 (507)
Q Consensus 286 ~~~~~~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~ 365 (507)
++++......+...+.+++++| +.++|+|+++.++.++.++++.|++++.+|.+++++|+||++++++..+.+.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 55688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhHHHH
Q 010561 366 ALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIG 445 (507)
Q Consensus 366 ~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 445 (507)
.+++..++++++++++++.+|++|+++.+.+..++++.++..++++++.+..+.+|+.||++.++..++++.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Q 010561 446 CLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKA 490 (507)
Q Consensus 446 ~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (507)
++++.+. +|..|+|++..+++.+..++..+++++.+|+++..+.
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA 452 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 9998766 8999999999999999999999999999998875443
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=2.4e-52 Score=420.11 Aligned_cols=433 Identities=17% Similarity=0.228 Sum_probs=398.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcch
Q 010561 51 WIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDM 130 (507)
Q Consensus 51 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 130 (507)
-+..|+++++++|.++++++..+.+.+|+.+++++|++++++++++.++.. +...+..|++++.+++++|++|++|+++
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~-~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNM-VIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 456899999999999999999999999999999999999999999999998 8888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHH
Q 010561 131 LGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLG--ESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSA 207 (507)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (507)
+++..++++.+++..+++.+++ +.+.++++.+++ .|+++.+.+..|+++..++.++..+...+.+++|+.|+++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 9999999999999999988877 788899999984 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc----CCccchhHHHHHHHHHHHHHHHHHHHHhc-c-ccccccCC-CCHHhhhhhHHHHH
Q 010561 208 YISAATLVVHVLLSWVAIFKL----GWGLLGASLVLSLSWWIIVAAQFVYILLS-E-RCKKTWTG-FSLQAFSGLWDFLK 280 (507)
Q Consensus 208 ~~~i~~~~~~i~l~~~li~~~----~~g~~g~~~a~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~l~ 280 (507)
..+++..++|+++++++++.+ ++|+.|+++|+.+++.+..++..++++++ + ..+.++++ +...+++.+|++++
T Consensus 184 ~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 263 (478)
T PRK10189 184 LINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMG 263 (478)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHH
Confidence 999999999999999999753 78999999999999999988776666543 1 22222222 11223467999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHH
Q 010561 281 LSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVV 360 (507)
Q Consensus 281 ~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~ 360 (507)
.|+|.+++.......+.+.+.+++.+| +.++|+|+++.++.++.+++..|++++.+|.+++++|+||.+++|+..+.+
T Consensus 264 iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~ 341 (478)
T PRK10189 264 IGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHV 341 (478)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999998888888888888888 557889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHh
Q 010561 361 TSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLI 440 (507)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 440 (507)
.++++.+++.++++++++++++..+|++|+|+.+.+..++++.++..++++++.+..+.+++.||++.++++++.+.|++
T Consensus 342 ~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v 421 (478)
T PRK10189 342 FWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGC 421 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcChHHH
Q 010561 441 GIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKE 486 (507)
Q Consensus 441 ~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~ 486 (507)
.+|+.++++...++|+.|+|++..+++.+..++..+++++.+|+++
T Consensus 422 ~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 422 RVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 9999999987778999999999999999999999999999999883
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=2.5e-51 Score=412.83 Aligned_cols=428 Identities=23% Similarity=0.310 Sum_probs=388.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 010561 50 TWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYD 129 (507)
Q Consensus 50 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 129 (507)
+++..|++++.++|.++++++..+.+.+|+.+++|+|++++++++++.++.. +...+..|++++.++.++|++|++|++
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~-~~~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYS-FVSIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 4667899999999999999999999999999999999999999999999999 777888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 010561 130 MLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYI 209 (507)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (507)
++++..+.++.+.++++++..++..+.+|++.+++.++|+.+.+.+|+++..++.++..+...+++++|+.|+++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999888777557799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc----CCccchhHHHHHHHHHHHHHHHHHHHHhcccc-cccc-CCCCHHhhhhhHHHHHHHH
Q 010561 210 SAATLVVHVLLSWVAIFKL----GWGLLGASLVLSLSWWIIVAAQFVYILLSERC-KKTW-TGFSLQAFSGLWDFLKLST 283 (507)
Q Consensus 210 ~i~~~~~~i~l~~~li~~~----~~g~~g~~~a~~l~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~~ 283 (507)
++++.++|+++++++++.+ ++|+.|+++|+.+++....+...+++++++.. +.+. .+..+.+++.+|++++.|+
T Consensus 164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~ 243 (464)
T PRK00187 164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGL 243 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhh
Confidence 9999999999999999753 48999999999999888877766666554222 1111 1112223466999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHH
Q 010561 284 ASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSI 363 (507)
Q Consensus 284 p~~~~~~~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~ 363 (507)
|.+++++.+...+.+++.+++++| +.++|++++++++..+.+++..+++.+..+.+++++|+||++++++..+.++.+
T Consensus 244 P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~ 321 (464)
T PRK00187 244 PIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGF 321 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998 456889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccC--ch---hHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 010561 364 SLALSVILAILVLILRNVMSYAFTG--GS---TVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYY 438 (507)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~i~~l~~~--d~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 438 (507)
+..++++.++++.++++++.++|++ |+ |+.+.+..++++.+++.++++++.+..+++++.||++.++++++++.|
T Consensus 322 ~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~ 401 (464)
T PRK00187 322 GAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYW 401 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHH
Confidence 9999999999999999999999964 44 688899999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 010561 439 LIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLR 480 (507)
Q Consensus 439 ~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 480 (507)
++++|+.+++.+.+++|+.|+|+++.+++++..++...++++
T Consensus 402 ~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 402 LVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888999999999999999988776655533
No 4
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=8.7e-49 Score=390.72 Aligned_cols=424 Identities=16% Similarity=0.190 Sum_probs=372.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 010561 51 WIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHL-GNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYD 129 (507)
Q Consensus 51 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 129 (507)
++..|+++++++|.++++++..+.+.+|+.+++++ |++++++++++.++.. +...+..+++.+.+++++|++|++|+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~-~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATS-FLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45678999999999999999999999999999998 6789999999999999 778888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHH
Q 010561 130 MLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAY 208 (507)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (507)
++++..++++.++++.+++..++ ..+.++++.+++.++++.+.+.+|+++..++.++..+..++.+.+|+.|+++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999988776 77889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhccccc-cccCCCCHHhhhhhHHHHHHHHHHHH
Q 010561 209 ISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCK-KTWTGFSLQAFSGLWDFLKLSTASAV 287 (507)
Q Consensus 209 ~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~p~~~ 287 (507)
.++++.++|+++++++++.+++|+.|+++|+.+++.+..++..++++++++.+ .+.+.++.+.++.+|++++.|.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 99999999999999999988999999999999999999888777766532211 11111221112458999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHH
Q 010561 288 MLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLAL 367 (507)
Q Consensus 288 ~~~~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 367 (507)
++......+.+.+.+++++| +.++|+|+++.++.++.+++..|++++.+|.+++++|+||++++|+..+.+.+++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 4568899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCc---chhHHHHHHHHHHHhhHHH
Q 010561 368 SVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGW---QAFVAYVNVGCYYLIGIPI 444 (507)
Q Consensus 368 ~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~i~l 444 (507)
+++++++++++++++..+|++|+|+.+.+..++++.++..+..+...+...++++.+| ++.++.+++++.|+..++.
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~ 401 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL 401 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764433355555555666665 9999999999876422211
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcChHH
Q 010561 445 GCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNK 485 (507)
Q Consensus 445 ~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~ 485 (507)
+.+|..|+|++..+++.++.++..+++++. ||+
T Consensus 402 -------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 402 -------PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred -------HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 236999999999999999999877766554 755
No 5
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=1.7e-48 Score=393.81 Aligned_cols=433 Identities=20% Similarity=0.366 Sum_probs=395.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 010561 50 TWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYD 129 (507)
Q Consensus 50 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 129 (507)
.++.+|+++++++|.+++++...+...+|+.+++++|++++++++++.++.. +...+..|++.+..+.++|++|++|++
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~-~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWL-PVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 3667999999999999999999999999999999999999999999999877 677788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHH
Q 010561 130 MLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAY 208 (507)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (507)
++++..+.++.+++..+++++++ +.+.++++.+++.++++.+.+..|+++..++.++..+...+++++|+.|+++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999888777 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh----cCCccchhHHHHHHHHHHHHHHHHHHHHhccccc-c-ccCCCCHHhhhhhHHHHHHH
Q 010561 209 ISAATLVVHVLLSWVAIFK----LGWGLLGASLVLSLSWWIIVAAQFVYILLSERCK-K-TWTGFSLQAFSGLWDFLKLS 282 (507)
Q Consensus 209 ~~i~~~~~~i~l~~~li~~----~~~g~~g~~~a~~l~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~ 282 (507)
.++++.++|+++++++++. .++|+.|+++++.+++.+..++..++.++++..+ . .+.++...+++.+|++++.+
T Consensus 166 ~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~ 245 (456)
T PRK01766 166 IGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLG 245 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHcc
Confidence 9999999999999999864 2479999999999999999998887776643221 1 11122222346699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHH
Q 010561 283 TASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTS 362 (507)
Q Consensus 283 ~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~ 362 (507)
+|.+++...+...+.++..+++++| +.++++++++.++.++..++..+++.+..+.+++++|+||++++|+..+.+++
T Consensus 246 ~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~ 323 (456)
T PRK01766 246 LPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLA 323 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999988 44688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhH
Q 010561 363 ISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGI 442 (507)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 442 (507)
++..++++.++++..+++++..+|++|+++.+.+..++++..+..++.+++....+++++.||++.++..++++.|++.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i 403 (456)
T PRK01766 324 VGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGL 403 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcChHH
Q 010561 443 PIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNK 485 (507)
Q Consensus 443 ~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~ 485 (507)
|+.+++...+++|..|+|+++.+++.+..++..+++++.+||.
T Consensus 404 ~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 404 PLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998878899999999999999999999888887776655
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=2e-48 Score=391.27 Aligned_cols=424 Identities=17% Similarity=0.244 Sum_probs=385.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 010561 51 WIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYD 129 (507)
Q Consensus 51 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 129 (507)
++..|++++.++|.++++++..+++.+|+.++++ +|++++++++++.++.. +...+..+++.+.+++++|++|++|+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~-~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIG-IILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 4577999999999999999999999999999999 59999999999999999 777788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHH
Q 010561 130 MLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAY 208 (507)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (507)
++++..+.++.++++.+++..++ ..+.++++.+++.++++.+.+.+|+++..++.++..+.....+.+|+.|+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999988877 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhcc-ccccccCCCCHHhhhhhHHHHHHHHHHHH
Q 010561 209 ISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSE-RCKKTWTGFSLQAFSGLWDFLKLSTASAV 287 (507)
Q Consensus 209 ~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~p~~~ 287 (507)
.++.+.++|+++++++++.+++|+.|+++|+.+++.+..++.++++++++ ..+.+.+.++ .+++.+|++++.|+|.++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~il~ig~P~~~ 245 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELR-FNWSLAPKIVLLGSSSFF 245 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCC-cCHHHHHHHHHhChhHHH
Confidence 99999999999999999988899999999999999999988777766542 2222222222 234668999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHH
Q 010561 288 MLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLAL 367 (507)
Q Consensus 288 ~~~~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 367 (507)
+.....+...+.+.+++.+|+ +.++|+|+++.++.++..++..|++++..|.+++++|+||+|++++..+.++++++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~ 324 (453)
T PRK09575 246 MYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLA 324 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999988888888888888874 3358899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhccC-chhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhHHHHH
Q 010561 368 SVILAILVLILRNVMSYAFTG-GSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGC 446 (507)
Q Consensus 368 ~~~~~~~~~~~~~~i~~l~~~-d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~ 446 (507)
+++.++++..+++++..+|++ |+|+.+.+.+++++.+++.+++++..+..+++++.||++.++..++.. +++++|+.+
T Consensus 325 ~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ 403 (453)
T PRK09575 325 GIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLF 403 (453)
T ss_pred HHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHH
Confidence 999999999999999999995 789999999999999999999999999999999999999999999876 478999999
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 010561 447 LLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLR 480 (507)
Q Consensus 447 ~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 480 (507)
+++.. +|+.|+|+++.+++.+..++..+++++
T Consensus 404 ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 404 ILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 98654 799999999999999988877665544
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.6e-35 Score=303.96 Aligned_cols=413 Identities=14% Similarity=0.086 Sum_probs=345.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhc-CChhHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCCcchHHH
Q 010561 57 LFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLEL-AAVSLGNTGIQVFAYGLM-LGMGSATETLCGQAYGAQKYDMLGV 133 (507)
Q Consensus 57 i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~s~~~g~~~~~~~~~ 133 (507)
+.|.+.-.++++++..+.+++|..+++| +|++++ ++++.+.++...+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5688889999999999999999999999 899999 899999999873333333 568888777776654332 67777
Q ss_pred HHHHHHHHHHHHHH-HHHHH-HHhHHHHHHHc--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 010561 134 YLQRSAVILTATGI-PLMVI-YIFSKQILLLL--GESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYI 209 (507)
Q Consensus 134 ~~~~~~~~~~~~~~-~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (507)
.+.++.......+. +..++ +++.+++..++ +.+++..+.+.+|++++.++.++..+..+.++++|+.+|++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 77776665554444 34444 77788888877 4566777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccchhH--HHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhhhHHHHHHHHHHHH
Q 010561 210 SAATLVVHVLLSWVAIFKLGWGLLGAS--LVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAV 287 (507)
Q Consensus 210 ~i~~~~~~i~l~~~li~~~~~g~~g~~--~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~ 287 (507)
+++.++++++...++. .++|..|++ +++.++..+..++.+++.+|++ .+.+. +++. +++..|++++++.|..+
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~-~~~~-~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAG-FLLKP-RFNF-RDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CcccC-cCCC-CChhHHHHHHHHHHHHH
Confidence 9998888776543333 467999988 9999999998888777666542 22111 2221 23568999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHH
Q 010561 288 MLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFM-IAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLA 366 (507)
Q Consensus 288 ~~~~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~~-~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~ 366 (507)
++....+...+|+.+.+.++. .++++|+.+.++.+++.. +..+++++..|.+++++|++|+++.++..+++.++...
T Consensus 235 ~~~~~~~~~~id~~~~~~~~~--~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 235 GSSASQITLLINTALASFLEI--GSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999988777764 357799999999998865 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhccC----chhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhH
Q 010561 367 LSVILAILVLILRNVMSYAFTG----GSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGI 442 (507)
Q Consensus 367 ~~~~~~~~~~~~~~~i~~l~~~----d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 442 (507)
+++|+++++.+++++++.+|.+ |++.++.+.++++++++..++.++..+..+.+++.||+|.+++.++... ++++
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i 391 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNA 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHH
Confidence 9999999999999999999976 5577889999999999999999999999999999999999999999886 7899
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 010561 443 PIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRT 481 (507)
Q Consensus 443 ~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 481 (507)
++.+++.. .+|..|+|+++.+++.+...+..++.+|+
T Consensus 392 ~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 392 LLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99888853 48999999999999999988877777664
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=1.1e-35 Score=304.01 Aligned_cols=414 Identities=14% Similarity=0.158 Sum_probs=346.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHH
Q 010561 58 FRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQ 136 (507)
Q Consensus 58 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~ 136 (507)
.|.+.|.++++++..+.+++|+.+++| +|++++|+++.+.++..++......|++++..+.++++.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 7999999999999998844554567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 010561 137 RSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLV 215 (507)
Q Consensus 137 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 215 (507)
.++.+.+..+++++++ ..+.+++...+..+++. ..++++..+..++..+.....+.+|+.+|.+..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999888777 66777776666665543 246778888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-----CCccchhHHHHHHHHHHHHHHHHHHHHhccccccc--cCCCCHHhhhhhHHHHHHHHHHHHH
Q 010561 216 VHVLLSWVAIFKL-----GWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKT--WTGFSLQAFSGLWDFLKLSTASAVM 288 (507)
Q Consensus 216 ~~i~l~~~li~~~-----~~g~~g~~~a~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~p~~~~ 288 (507)
+++.++..++..+ ++++.|+++++.++..+..++.+++.+++++.+.+ +.+....+++.+|+++++++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 9987766665421 35677888999999999888876666554332211 1111222346789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC----Cc-hH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHH
Q 010561 289 LCLEIWYYQIIVLIAGLL----DN-AE---IVLDSL-SICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIV 359 (507)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~----~~-~~---~~va~~-~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~ 359 (507)
++.......+|++++++. +. .. ..++.| +++.++.+++..+..+++++..|.+++++|+||+++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998888653 11 11 122333 4667788888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 010561 360 VTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYL 439 (507)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 439 (507)
+.+++..+++|+++++..+++++..++.++++ +.++++++++..++.++..+..+.+++.||+|..++.++++. +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999999886543 567899999999999999999999999999999999999987 7
Q ss_pred hhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 010561 440 IGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLR 480 (507)
Q Consensus 440 ~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 480 (507)
+++++.+++...+.+|..|+|+++.+++.+..++..+..+|
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88998888754467899999999999999999988887766
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=8e-36 Score=290.81 Aligned_cols=338 Identities=33% Similarity=0.571 Sum_probs=306.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 010561 63 PAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVIL 142 (507)
Q Consensus 63 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 142 (507)
|.++++++..+...+|+.+++++|++++++++++.++.. +...+..|++++..+.++++.|++|+|++++..+..+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~-~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFM-FLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHH-HHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999888 8888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 010561 143 TATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLS 221 (507)
Q Consensus 143 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~ 221 (507)
...+++.+++ +++.+++..+++.+++..+.+..+++++.++.++..+.....+.+|+.||++.+...++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998887 888999999998788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hcC-CccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010561 222 WVAIF-KLG-WGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQII 299 (507)
Q Consensus 222 ~~li~-~~~-~g~~g~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~ 299 (507)
+++++ .+| +|+.|+++++.+++++..++..++.+++++.+.++++..+.+++..|+++++++|..++++...+.+.++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99987 677 8899999999999999988887777653333322212122234669999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010561 300 VLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILR 379 (507)
Q Consensus 300 ~~l~~~~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (507)
+.+++.+| +.++++|+++.++.++...++.+++++..|.++++++++|.++.++..+++.++.+.++++..+++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887 4568899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCchhHHHHHHHHhHHH
Q 010561 380 NVMSYAFTGGSTVADSVAELSPFL 403 (507)
Q Consensus 380 ~~i~~l~~~d~~~~~~~~~~l~~~ 403 (507)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999888887764
No 10
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=5.3e-37 Score=302.96 Aligned_cols=449 Identities=47% Similarity=0.794 Sum_probs=427.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcch
Q 010561 51 WIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDM 130 (507)
Q Consensus 51 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 130 (507)
+...|++++++.|.++..+.+.....+++.++||+|+.++++.+++.+..+.....+..|+..+..+.++|++|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 66789999999999999999999999999999999999999999999999977888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 010561 131 LGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYIS 210 (507)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 210 (507)
...+.+++..+....+++...++.+.+|+...++.++++...+..|.++..+..+.+........++|+.++.....+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhhhHHHHHHHHHHHHHHH
Q 010561 211 AATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLC 290 (507)
Q Consensus 211 i~~~~~~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~ 290 (507)
....++++.+++++++..++|..|++++..+++++.......+..... .+..|..++.+ ++.++++++.+.|.+++..
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~mic 261 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMIC 261 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeH
Confidence 999999999999999999999999999999999999999888887653 55566666766 7889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHH
Q 010561 291 LEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVI 370 (507)
Q Consensus 291 ~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 370 (507)
++++.+.+..++.+.++++...+++.+++.++....++++.+++.+...++++.+|+++++++|.....+...+...+..
T Consensus 262 lE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~ 341 (473)
T KOG1347|consen 262 LEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGAS 341 (473)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhHHHHHHHHH
Q 010561 371 LAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGF 450 (507)
Q Consensus 371 ~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~ 450 (507)
.+..+....+.+..+|++|+++.+...+..++++...++++.+.+..+..++.|+++...++++.+.++..+|..+.+++
T Consensus 342 ~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~ 421 (473)
T KOG1347|consen 342 LGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGF 421 (473)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhhhhcccc
Q 010561 451 KFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKARNRMDEWGDKT 501 (507)
Q Consensus 451 ~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (507)
..++|..|.|.++..+..+..........+.+|+++..+.+++.+.+.++.
T Consensus 422 ~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~~~ 472 (473)
T KOG1347|consen 422 FTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLVLV 472 (473)
T ss_pred EEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhccCC
Confidence 888999999999999988888888888888999999999999998887764
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=4.7e-34 Score=285.16 Aligned_cols=405 Identities=11% Similarity=0.015 Sum_probs=338.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHH
Q 010561 57 LFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYL 135 (507)
Q Consensus 57 i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~ 135 (507)
++|.+.....++++..+.+++...+++| +|++++|.++..+++...+......|++++.++.++|+ ++|+++.++..
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5688888999999999999999999999 89999999999999998555555888888888899987 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 010561 136 QRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATL 214 (507)
Q Consensus 136 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 214 (507)
++++.+.+..+++++++ +++.+|+...+..+++. . .+..+..+..++..+.....+.+|+.++++.++..++++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY-Q---GVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877 88889998877766642 2 3455566656666778899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 010561 215 VVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIW 294 (507)
Q Consensus 215 ~~~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~ 294 (507)
++|+++ .++.... .|+.|+++|+.+++.+..+...++.+|++..+.+..+++. +++.+|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSW-DNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 4444332 3999999999999999887776666654332222212222 235689999999999999999999
Q ss_pred HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHH
Q 010561 295 YYQIIVLIAG-LLDNAEIVLDSLSICMTIAGW-VFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILA 372 (507)
Q Consensus 295 ~~~~~~~l~~-~~~~~~~~va~~~i~~~i~~~-~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (507)
.+..++.+++ .+| +.++|.|+++.|+.+. ...+..+++++..|.++++ +|.++.++..++..+....+.++.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998886 666 5578999999999875 5899999999999999985 6789999999999999999999999
Q ss_pred HHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhHHHHHHHHHhc
Q 010561 373 ILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKF 452 (507)
Q Consensus 373 ~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~ 452 (507)
+++++++++++.++.+|+ ++++.+++++++++.++...+......+.+.++++.....++.. .++++++.+++. +
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li--~ 383 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLI--P 383 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--H
Confidence 999999999999999876 77788999999999999988888888888888888777777665 478999999884 4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 010561 453 NLGTKGIWSGMIGGTLIQTIILVYVTLR 480 (507)
Q Consensus 453 ~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 480 (507)
.+|..|+++++++++++...+..+...+
T Consensus 384 ~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 384 LHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999998877765554
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=1e-27 Score=239.60 Aligned_cols=386 Identities=15% Similarity=0.126 Sum_probs=332.1
Q ss_pred CChh-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Q 010561 85 LGNL-ELAAVSLGNTGIQVFAYGLM-LGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILL 161 (507)
Q Consensus 85 lg~~-~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 161 (507)
+|.. +..+|..+.++..++...+. .++.++..|...+.. ++++++.++..+....+....+++++++ ++++++++.
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5655 56689999999994444444 568999999999998 8888999999999988888888888777 889999998
Q ss_pred Hc--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCc---cchhH
Q 010561 162 LL--GESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWG---LLGAS 236 (507)
Q Consensus 162 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g---~~g~~ 236 (507)
++ +.+++..+.+...++++.+..++.++..++.+++|+++|...+....++.++..++...++... .| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence 87 4567888999999999999999999999999999999999999999998887766654444433 35 88899
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 010561 237 LVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSL 316 (507)
Q Consensus 237 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~va~~ 316 (507)
++..++.++..++.+...+|. ..+.++ +++.+ .+..|++++...|..+.....++...+++.+.+.++.|. ++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~-~~~~~~-~~~~~-~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~--vs~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRF-GFRFRP-KFDWR-DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGS--VSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCcccc-cCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH--HHHH
Confidence 999999999998888877764 222221 12222 145899999999999999999999999999999988654 7799
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC----chh
Q 010561 317 SICMTIAGWVF-MIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTG----GST 391 (507)
Q Consensus 317 ~i~~~i~~~~~-~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----d~~ 391 (507)
+.++++.+++. .+..+++++..|.+++...++|.++.++..+++++....+.+|+++++..++++++.++.. |.+
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 99999999987 6688999999999999999999999999999999999999999999999999999988742 556
Q ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Q 010561 392 VADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQT 471 (507)
Q Consensus 392 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~ 471 (507)
..+.+..++.+++++.++.++..++...+.+.||+|.+++.++++. ++++.+++++. +.+|..|+++++.++..+..
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~--~~~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLV--PFFGVAGLALATSLSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999999999999999999999999997 88999998774 45899999999999999999
Q ss_pred HHHHHHHHhc
Q 010561 472 IILVYVTLRT 481 (507)
Q Consensus 472 ~~~~~~~~~~ 481 (507)
++.++..+|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 9888877774
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.97 E-value=2.7e-26 Score=224.94 Aligned_cols=420 Identities=14% Similarity=0.079 Sum_probs=347.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CChh-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCCcchH
Q 010561 55 KNLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNL-ELAAVSLGNTGIQVFAYGL-MLGMGSATETLCGQAYGAQKYDML 131 (507)
Q Consensus 55 ~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~-~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~s~~~g~~~~~~~ 131 (507)
..++|.+.-....++++.+.+++-..+++. +|.. ...++.++.++.+++--.+ -.+++++..|...++..++..|++
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 456777778888888999999998888887 8985 6678999999999443333 345689999999999887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHH-HHcCCC--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHH
Q 010561 132 GVYLQRSAVILTATGIPLMVI-YIFSKQIL-LLLGES--SAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSA 207 (507)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~-~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (507)
++.......+...+.+..+++ .++.++++ ..++.. ++....+....+++.+..++.++.....+++++.++...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 777777776666666666666 67777777 344332 33333577788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhhhHHHHHHHHHHHH
Q 010561 208 YISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAV 287 (507)
Q Consensus 208 ~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~ 287 (507)
+..+..++.-+.....+..+.+....+.++++.++-+...++.+...+|..........++. +.+|++++.-.|..+
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~---~~lk~~~~~~~p~~l 243 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKD---PGLKRFLKLMLPALL 243 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCc---hhHHHHHHHHHHHHH
Confidence 99999988888666666554433466889999999999999999988885322211112222 458999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHH
Q 010561 288 MLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVF-MIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLA 366 (507)
Q Consensus 288 ~~~~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~-~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~ 366 (507)
.....++...+++.+.+.+.++. ++.+..+.++.+++. .+..++++++.|.++++..++|.++.++..+.+++.+++
T Consensus 244 ~~sisQi~lli~~~iAS~l~~Gs--is~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ll 321 (518)
T COG0728 244 GVSISQINLLIDTAIASFLAEGS--VSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLL 321 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999997654 669999999999998 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhccC----chhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhH
Q 010561 367 LSVILAILVLILRNVMSYAFTG----GSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGI 442 (507)
Q Consensus 367 ~~~~~~~~~~~~~~~i~~l~~~----d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 442 (507)
+++|.++++.++++|++.++.. +++....+...+..++++.++..+..++...+++.+|+|.++++++++. ++++
T Consensus 322 l~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~ 400 (518)
T COG0728 322 LTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNI 400 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHH
Confidence 9999999999999999988732 3455788889999999999999999999999999999999999999997 8899
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Q 010561 443 PIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTD 482 (507)
Q Consensus 443 ~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 482 (507)
.++..+ .+.+|..|.+.+..++..++..+.++..+|+.
T Consensus 401 ~l~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 401 LLNLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HHHHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999666 45589999999999998888888777776643
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.97 E-value=1.8e-26 Score=235.89 Aligned_cols=398 Identities=14% Similarity=0.101 Sum_probs=316.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHH
Q 010561 54 LKNLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLG 132 (507)
Q Consensus 54 ~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~ 132 (507)
.++..+-+.+..++++...+.+++...+++| +|++++|.++.+..+..++......|++++.. |. ++. .+
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~--~~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDI--SH 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccC--CH
Confidence 3667888899999999999999999999999 89999999999999999666677788888652 22 111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 010561 133 VYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISA 211 (507)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 211 (507)
+.....+.+....++++.++ +.+.+++..+++. ++. ...+++..+..++..+.....+.+++.++.+.....++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHN-PEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-hhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 33455666777777766665 5555555555544 332 34567777777778888889999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhhhHHHHHHHHHHHHHHHH
Q 010561 212 ATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCL 291 (507)
Q Consensus 212 ~~~~~~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~ 291 (507)
...++..++...+.. .++|..+.+++..++..+..+......+++ + ++++ +++ ++..|++++++.|...+++.
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~-~-~~~~-~~~---~~~~k~ll~~~~~~~~~~~~ 222 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKI-Y-RPAL-HFS---LASVKPNLSFGAWQTAERII 222 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhccc-C-Cccc-eec---HHHHHHHHhhhHHHHHHHHH
Confidence 888887777766655 478999999999999888766543333222 1 1111 122 34589999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHH
Q 010561 292 EIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVF-MIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVI 370 (507)
Q Consensus 292 ~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~-~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 370 (507)
..+....|+++++.+.. +.++|.|+.+.++.+.+. .+...++.+..|.+++. ++|.++.++.+++..++...+++|
T Consensus 223 ~~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 223 NYLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887753 446899999999998865 45556788999999885 578899999999999999999999
Q ss_pred HHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhHHHHHHHHH
Q 010561 371 LAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGF 450 (507)
Q Consensus 371 ~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~ 450 (507)
+.+++.+++++++.++.+|+ +..+.+.++++++..++..+..+....+++.||+|..++.+++.. ++.+|..+.+.
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~- 375 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGG- 375 (492)
T ss_pred HHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHH-
Confidence 99999999999999988765 788999999999999999999999999999999999999988876 67777776664
Q ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 010561 451 KFNLGTKGIWSGMIGGTLIQTIILVYVTLR 480 (507)
Q Consensus 451 ~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 480 (507)
+.+|..|+++++.+++.+...+..+...|
T Consensus 376 -~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 376 -QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred -hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999988877776633
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.95 E-value=2.1e-24 Score=220.24 Aligned_cols=390 Identities=15% Similarity=0.146 Sum_probs=305.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchH
Q 010561 53 ELKNLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDML 131 (507)
Q Consensus 53 ~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~ 131 (507)
..+++.|.+.....+++...+.+++....++| +|++++|.++.+.++..++......|+..+..+.++++.+++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 45678889999999999999999999999999 89999999999999999777777799999999999988766555555
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 010561 132 GVY-LQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYIS 210 (507)
Q Consensus 132 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 210 (507)
... ...........+++......+..+. + +.....+.+..+..+.........+.+|+.++.+......
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------D----PVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI 153 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc------C----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 544 4444444444433333332222222 1 1223456778888889999999999999999999999884
Q ss_pred HHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhc-cccccccCCCCHHhhhhhHHHHHHHHHHHHHH
Q 010561 211 AATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLS-ERCKKTWTGFSLQAFSGLWDFLKLSTASAVML 289 (507)
Q Consensus 211 i~~~~~~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~ 289 (507)
+.. ...+.....+.. .......++..++..........+..++ ++..... .+. .++..|+++++++|..+.+
T Consensus 154 ~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~l~~~~p~~~~~ 226 (480)
T COG2244 154 VSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPI--LRF-SLALLKELLRFGLPLLLSS 226 (480)
T ss_pred HHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--cCc-hhHHHHHHHHHhhHHHHHH
Confidence 444 122222222221 2344556666666666555555555422 1111111 111 2466999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHH
Q 010561 290 CLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSV 369 (507)
Q Consensus 290 ~~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 369 (507)
....+....|+++++.+-. +..+|.|+.+.++......+..+++.+..|.+++...++|.++.++..+.++++...+++
T Consensus 227 ~~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (480)
T COG2244 227 LLNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISI 305 (480)
T ss_pred HHHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998753 556899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhHHHHHHHH
Q 010561 370 ILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLG 449 (507)
Q Consensus 370 ~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~ 449 (507)
|..+++..+++++..++.+++ +..+...+.++++..++.++.......+++.|+++..++.+.++. +.++.+.+++
T Consensus 306 p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~l- 381 (480)
T COG2244 306 PALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLL- 381 (480)
T ss_pred HHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHH-
Confidence 999999999999999988766 555889999999999999999999999999999999999999987 7888888888
Q ss_pred HhcCCCcchHHHHHHH
Q 010561 450 FKFNLGTKGIWSGMIG 465 (507)
Q Consensus 450 ~~~~~g~~g~~~a~~i 465 (507)
++.+|..|+..++..
T Consensus 382 -i~~~g~~g~~~a~~~ 396 (480)
T COG2244 382 -IPRFGLIGAAIATAS 396 (480)
T ss_pred -HHhhhhhhHHHHHHH
Confidence 455899999999833
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.88 E-value=9.9e-21 Score=190.95 Aligned_cols=208 Identities=18% Similarity=0.192 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 010561 48 KATWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQK 127 (507)
Q Consensus 48 ~~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~ 127 (507)
+.+++..|++++.++|.++++++......+|..+++++|++++++++++.++.. +...+..|++++.+++++|++|++|
T Consensus 229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~-l~~~~~~gi~~a~~~lvgq~~Ga~~ 307 (464)
T PRK00187 229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVS-VAFMVPVGLSYAVTMRVGQHYGAGR 307 (464)
T ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345677999999999999999999999999999999999999999999999999 8888999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC--CH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q 010561 128 YDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGE--SS---AIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQS 201 (507)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 201 (507)
++++++..+.++.++...+++..++ +++.+++..++.. ++ ++.+.+..|+++..++.++.+++.++.+.+|+.|
T Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G 387 (464)
T PRK00187 308 LLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLK 387 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccC
Confidence 9999999999999999999988877 8899999998853 33 6888999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHH-HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010561 202 IISPSAYISAATL-VVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILL 256 (507)
Q Consensus 202 ~~~~~~~~~i~~~-~~~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~ 256 (507)
+++.+++.+++.. ++++++++++.+.+++|+.|+++++.+++.+..++....+++
T Consensus 388 ~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 388 DARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999985 999999999999888999999999999999988777665544
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.88 E-value=3.3e-20 Score=185.48 Aligned_cols=208 Identities=24% Similarity=0.269 Sum_probs=198.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhH
Q 010561 273 SGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKS 352 (507)
Q Consensus 273 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~ 352 (507)
+..|+++++++|..++++.......+|++++++++ +.++|+-++++++..+...+..+++.+..+.++|++|+||+++
T Consensus 14 ~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 14 KILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 56899999999999999999999999999999998 5678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHH
Q 010561 353 CKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYV 432 (507)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 432 (507)
+++..+.++..+.++++++.++...+++++..++.+++|+.+.+.+|+++..++.++..++....+++++.||+|.+++.
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~ 171 (455)
T COG0534 92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI 171 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHh-cC-CCcchHHHHHHHHHHHHHHHHHHHHHhcCh
Q 010561 433 NVGCYYLIGIPIGCLLGFK-FN-LGTKGIWSGMIGGTLIQTIILVYVTLRTDW 483 (507)
Q Consensus 433 ~~~~~~~~~i~l~~~l~~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 483 (507)
++++. ++|+++.+++.+. .+ +|+.|+++|+.+++.+..++..+++.|++.
T Consensus 172 ~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 172 LLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 99997 9999999999887 45 899999999999999999998888887653
No 18
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.87 E-value=7.7e-20 Score=182.82 Aligned_cols=206 Identities=14% Similarity=0.150 Sum_probs=191.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhH
Q 010561 273 SGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKS 352 (507)
Q Consensus 273 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~ 352 (507)
+..|++++.++|..++++.......+|+.++++++. +.++|+.+++.++.++...+..+++.+..+.++|++|+||+++
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 458899999999999999999999999999999853 4468899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHH
Q 010561 353 CKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYV 432 (507)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 432 (507)
+++..+.++..+.++++++.+....+.+++..+++.|+|+.+.+.+|+++..++.++..+.....+++++.||++.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999998888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 010561 433 NVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLR 480 (507)
Q Consensus 433 ~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 480 (507)
++++. ++++++.+++.+..++|+.|+++|+.+++.+..++..+++++
T Consensus 165 ~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 889999999988778999999999999999988776665554
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.87 E-value=5.6e-20 Score=185.58 Aligned_cols=205 Identities=14% Similarity=0.154 Sum_probs=189.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhH
Q 010561 273 SGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKS 352 (507)
Q Consensus 273 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~ 352 (507)
+..|++++.++|.+++++.......+|+.+++++| +.++|+++++.++..+...+..+++.+..+.+++++|+||+++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 55899999999999999999999999999999987 5568899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc--CchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHH
Q 010561 353 CKFSVIVVTSISLALSVILAILVLILRNVMSYAFT--GGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVA 430 (507)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 430 (507)
+++..+.++.++..++++.+++..++++++..++. .|+|+.+.+.+++++..++.++..+.....+++++.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHh----cCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 010561 431 YVNVGCYYLIGIPIGCLLGFK----FNLGTKGIWSGMIGGTLIQTIILVYVTLR 480 (507)
Q Consensus 431 ~~~~~~~~~~~i~l~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 480 (507)
.+++++. ++++++.+++.+. +++|+.|+|+++.+++.+..++..+++.+
T Consensus 184 ~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 184 LINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI 236 (478)
T ss_pred HHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999865 8899999888753 47899999999999999988776655543
No 20
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.87 E-value=1.2e-19 Score=183.64 Aligned_cols=208 Identities=17% Similarity=0.088 Sum_probs=191.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChh
Q 010561 272 FSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPK 351 (507)
Q Consensus 272 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~ 351 (507)
++.+|+++++++|.+++++.......+|..+++++| +.++++++++.++..+...+..+++.+..|.+++++|++|++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 466999999999999999999999999999999987 446889999999988888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHH
Q 010561 352 SCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAY 431 (507)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 431 (507)
+.++..+.++.+++.+++++++++.++++++..++..|+++.+.+..+++++.++.++..+.....+++++.|+++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHh----cCCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Q 010561 432 VNVGCYYLIGIPIGCLLGFK----FNLGTKGIWSGMIGGTLIQTIILVYVTLRTD 482 (507)
Q Consensus 432 ~~~~~~~~~~i~l~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 482 (507)
.++++. ++++++.+++.+. +.+|+.|+++++.+++.+..++..++.+|++
T Consensus 166 ~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 166 IGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 999987 7899999887642 4689999999999999999888777666543
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.86 E-value=1.2e-19 Score=182.79 Aligned_cols=205 Identities=12% Similarity=0.071 Sum_probs=192.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChh
Q 010561 273 SGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLL-DNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPK 351 (507)
Q Consensus 273 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~l~~~~-~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~ 351 (507)
+..|++++.++|..++++...+...+|+.+++++ | +.++++++++.++.++...+..+++.+..+.+++++|+||+|
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 5579999999999999999999999999999996 6 556889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHH
Q 010561 352 SCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAY 431 (507)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 431 (507)
+.++..+.++.++.++++++++++.++++++..+++.|+++.+.+.+++++..++.++..+......++++.|+++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 010561 432 VNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLR 480 (507)
Q Consensus 432 ~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 480 (507)
.++.+. ++++++++++...+++|+.|+++++.+++.+..++..+++++
T Consensus 167 ~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~ 214 (453)
T PRK09575 167 LMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFS 214 (453)
T ss_pred HHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999886 899999999987778999999999999999988886666554
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.80 E-value=9.4e-17 Score=164.98 Aligned_cols=206 Identities=17% Similarity=0.137 Sum_probs=185.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 010561 50 TWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYD 129 (507)
Q Consensus 50 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 129 (507)
+++..|++++.+.|..++++...+...+|+.+.+.+|++++++|+.+.++..+....+..+++++..|.+++++|++|++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~ 297 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN 297 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34578999999999999999999999999998667899999999999999983334467899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChh
Q 010561 130 MLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGE----SSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIIS 204 (507)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (507)
+.++..+++.......+++++++ ..++++++.++.+ +++..+.+..++++++++.++.++..+..+.+++.||++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 377 (502)
T TIGR01695 298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence 99999999999999999998887 8899999988765 557788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 010561 205 PSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLS 257 (507)
Q Consensus 205 ~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~~ 257 (507)
.+++.++...++|+++++++++.+ |..|+++++.+++.+..++..++.+|+
T Consensus 378 ~~~~~~~~~~~i~i~l~~~l~~~~--G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 378 TPFINSVISVVLNALLSLLLIFPL--GLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988754 899999999999999988887777664
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.77 E-value=2.7e-15 Score=141.22 Aligned_cols=270 Identities=17% Similarity=0.184 Sum_probs=204.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHH
Q 010561 58 FRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQ 136 (507)
Q Consensus 58 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~ 136 (507)
+|.+.....++++..+.+++...+++| +|++++|.++.+.++..++......|++++..+.++++..+ +++.+.+..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 577788889999999999999999999 89999999999999999566666899999998888876442 344445555
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 010561 137 RSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVV 216 (507)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ 216 (507)
......++.+++...... +...++.++.. ..+........++.........++++.++.+.....++...++
T Consensus 80 ~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILL----IASFFGNPSLS----LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHcCCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333333222 22244433221 1122222222256778888999999999999999999999888
Q ss_pred HHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010561 217 HVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYY 296 (507)
Q Consensus 217 ~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~ 296 (507)
..++..+++.. +.+..+..++..++..+..++...+.+|+.+ .++... +++..|++++++.|..+.++...+..
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR--PRFSFF---SKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cccccc---chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776666654 4458899999999999888888777776422 222222 24669999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010561 297 QIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNE 344 (507)
Q Consensus 297 ~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~ 344 (507)
..|.++++.+.+ ..++|.|+++.++.+....+..++.++..|.+++.
T Consensus 226 ~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 226 QIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999864 45699999999999999999999999999999875
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.76 E-value=3.5e-16 Score=152.44 Aligned_cols=194 Identities=18% Similarity=0.221 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHH
Q 010561 284 ASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSI 363 (507)
Q Consensus 284 p~~~~~~~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~ 363 (507)
|.+++++...+...+++.++++++ +.++++|+++.++..+...+..+++++..|.++++.|++|+|+.++..+..+.+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 677888899999999999999988 445789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhHH
Q 010561 364 SLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIP 443 (507)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 443 (507)
...++++.++++.++++++..+++.|++..+.+..+++++++..++.++.....+.+++.||++...+.++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888899999999999999999999999999999999999999999887 77888
Q ss_pred HHHHHHH-hcC-CCcchHHHHHHHHHHHHHHHHHHHHHh
Q 010561 444 IGCLLGF-KFN-LGTKGIWSGMIGGTLIQTIILVYVTLR 480 (507)
Q Consensus 444 l~~~l~~-~~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~ 480 (507)
+.+++.. ..+ +|..|+++++.+++++..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887765 445 679999999999999988887766654
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.73 E-value=6.1e-18 Score=145.92 Aligned_cols=162 Identities=22% Similarity=0.385 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHH
Q 010561 284 ASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSI 363 (507)
Q Consensus 284 p~~~~~~~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~ 363 (507)
|.+++++.....+.+++.+++++|. .++++++++.++.++...+..+++++..+.+++++|++|++++++..+.++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~--~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGP--EALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTT--CCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 8889999999999999999999964 45779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhHH
Q 010561 364 SLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIP 443 (507)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 443 (507)
+..++++.++++.++++++..+|++|+++.+.+.+++++..+..++.++.....+++++.||++..++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 010561 444 IGCL 447 (507)
Q Consensus 444 l~~~ 447 (507)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9875
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.71 E-value=2.6e-14 Score=143.21 Aligned_cols=205 Identities=16% Similarity=0.162 Sum_probs=189.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcch
Q 010561 51 WIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDM 130 (507)
Q Consensus 51 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 130 (507)
.+..|++++...|..++....++...+|+.+.+++++.++++++.++++.++....+..++++...|..++...++|.++
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~ 273 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE 273 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 34588999999999999999999999999999999999999999999999966667888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhH
Q 010561 131 LGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLG----ESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISP 205 (507)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (507)
.++.+++++...+.+.++++++ ..+++|++.++. -+.+-.+.....+++++++.++.++..++...+.+.+|+|.
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 9999999999999999999887 899999997664 25666777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 010561 206 SAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLS 257 (507)
Q Consensus 206 ~~~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~~ 257 (507)
++..++++.++|++++.++...+ |..|.++++.++..+..++.+...+|+
T Consensus 354 ~~~~~~~~~~lni~l~~~l~~~~--g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 354 PVRISVISVVLNIILSILLVPFF--GVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888765 999999999999999999988888775
No 27
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.71 E-value=1.9e-15 Score=154.75 Aligned_cols=204 Identities=15% Similarity=0.155 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CCh------h---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 010561 49 ATWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGN------L---ELAAV-SLGNTGIQVFAYGLMLGMGSATET 117 (507)
Q Consensus 49 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~------~---~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~ 117 (507)
.+++..|+++++++|..++++...+...+|+.++++ +++ + .+|.+ +.+.++.. +...+..+++++..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~-~~~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLT-FPAVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHH-hHHHHHHHHHHHHHH
Confidence 346688999999999999999999999999999987 422 2 22333 34556666 556778899999999
Q ss_pred HHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010561 118 LCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKF 196 (507)
Q Consensus 118 ~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 196 (507)
.++++.|++|+++.++..++...+....+++.+++ ..++++++.++.+++ .+..+++++++..++..+.....+.
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877 888899988876543 3567889999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 010561 197 LQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLS 257 (507)
Q Consensus 197 l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~~ 257 (507)
+++.||++.+++.++...++|++++++++....+|+.|+++++.+++.+..++..+..+|.
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988733346999999999999999988887777653
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.71 E-value=9.7e-18 Score=144.63 Aligned_cols=160 Identities=24% Similarity=0.382 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 010561 63 PAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVIL 142 (507)
Q Consensus 63 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 142 (507)
|.++++++..+...+|+.+++++|++++++++++.++.. +...+..|+++|..+.++|++|++|++++++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~-~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFS-ILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHhhhcccccccccceeecccccccccccccccccccccc
Confidence 889999999999999999999999999999999999999 8888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH-HHHHHH
Q 010561 143 TATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATL-VVHVLL 220 (507)
Q Consensus 143 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~l 220 (507)
...+++..++ ..+.+++..+++.++++.+.+..|+++..+..++..+.....+++|+.|+++.+++.+++.. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999988 89999999999999999999999999999999999999999999999999999999999987 999998
Q ss_pred HHH
Q 010561 221 SWV 223 (507)
Q Consensus 221 ~~~ 223 (507)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.69 E-value=1.9e-13 Score=134.98 Aligned_cols=204 Identities=15% Similarity=0.154 Sum_probs=186.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchH
Q 010561 52 IELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDML 131 (507)
Q Consensus 52 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~ 131 (507)
+..|++.+...|..++....++..++|+.+.+.+.+...+.+..+..+.++..-.+..++++...|..||+..++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 67899999999999999999999999999999999999999999999999666689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHH
Q 010561 132 GVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGE----SSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPS 206 (507)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (507)
++..+.++.++++++++.+++ ..+++|++..+.. +++........+..+..+.++..+..++...+.+.+|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999988 8999999976632 44556667788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 010561 207 AYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLS 257 (507)
Q Consensus 207 ~~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~~ 257 (507)
+.+.+++.++|+++++.+...+ |..|.++++.++.++.+.++++..+|+
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~~--~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPPL--GHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999997777655 788899999999999988888877775
No 30
>PRK15099 O-antigen translocase; Provisional
Probab=99.66 E-value=3.6e-14 Score=141.98 Aligned_cols=202 Identities=7% Similarity=-0.049 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 010561 48 KATWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCG-HLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQ 126 (507)
Q Consensus 48 ~~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~-~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~ 126 (507)
+.+++..|++++++.|..++++...+...+|+.+++ ++|++++|.|+.+.++...+...+..+++++..|.+++. +
T Consensus 208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~ 284 (416)
T PRK15099 208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T 284 (416)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 346778899999999999999999999999999998 599999999999999987455778999999999999995 5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhH
Q 010561 127 KYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISP 205 (507)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (507)
|+++.++..++........+++++++ .+++++++.++.+++ ++.+.+++++++++.++...+..+...+-+.++.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~ 362 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF 362 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888999999888888888776 789999999888764 344677888888888887777777777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010561 206 SAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILL 256 (507)
Q Consensus 206 ~~~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~ 256 (507)
.....+...++++++++++++.+ |..|+++++.+++.+..++......+
T Consensus 363 ~~~~~~~~~~l~i~l~~~li~~~--G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 363 YILAEVSQFTLLTGFAHWLIPLH--GALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999866 99999999999999998877665554
No 31
>PRK10459 colanic acid exporter; Provisional
Probab=99.65 E-value=7.9e-13 Score=135.44 Aligned_cols=201 Identities=16% Similarity=0.097 Sum_probs=171.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 010561 50 TWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY 128 (507)
Q Consensus 50 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~ 128 (507)
+++..|++++++.|...+++...+...+|+.++++ +|++++|.|+.+.++.+.....+...++....|..++. ++|.
T Consensus 202 ~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~ 279 (492)
T PRK10459 202 SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDT 279 (492)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCH
Confidence 35678999999999999999999999999999998 79999999999999998444555556777888888885 5678
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHH
Q 010561 129 DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSA 207 (507)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (507)
++.++.+++...+...+++++.++ ..+++|++.++.+++ +..+...++++++...+..........+++.||+|..+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~ 357 (492)
T PRK10459 280 EKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSF 357 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhH
Confidence 889999999999999999988877 888899987776543 56678889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010561 208 YISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILL 256 (507)
Q Consensus 208 ~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~ 256 (507)
..+++..+++++..+++... +|+.|+++++.+++.+......++..|
T Consensus 358 ~~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 358 KWNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888877666654 499999999999999988877776644
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.60 E-value=6.2e-12 Score=116.78 Aligned_cols=246 Identities=16% Similarity=0.185 Sum_probs=175.0
Q ss_pred HHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 010561 74 VAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI 152 (507)
Q Consensus 74 ~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (507)
.+++...+++| +|++++|.++....+..+.......|+...... ..++++++.++..........+.+++..++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888898 899999999999999995555456777766533 233556666666666655544444433332
Q ss_pred HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 010561 153 YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGL 232 (507)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~ 232 (507)
...+..++ .+++. ..++....+..++........+.+++.+|.+......+...++..++...+.. .+.+.
T Consensus 78 ---~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (251)
T PF13440_consen 78 ---AILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNL 148 (251)
T ss_pred ---HHHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhH
Confidence 11222233 33322 23455566777788888999999999999999999999988887555444444 34488
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Q 010561 233 LGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIV 312 (507)
Q Consensus 233 ~g~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 312 (507)
.+..++..++.++..++.+...+++ .+.. .+ .+..| .++.+.|..+.++........|.++++.+- +..+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~~ 218 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRRK--LRLS---FK---FSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPEA 218 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc--cCCC---ch---hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHH
Confidence 8888988888888776665533322 1111 11 12234 799999999999999999999999999933 2556
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 010561 313 LDSLSICMTIAGWVF-MIAVGFNAAASVRVGN 343 (507)
Q Consensus 313 va~~~i~~~i~~~~~-~~~~~~~~~~~p~~~~ 343 (507)
+|.|+++.++.+.+. .+..++++...|.+++
T Consensus 219 ~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 219 VGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 899999999999888 9999999999999986
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.54 E-value=2.9e-12 Score=130.96 Aligned_cols=187 Identities=21% Similarity=0.234 Sum_probs=170.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 010561 50 TWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY 128 (507)
Q Consensus 50 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~ 128 (507)
.++..|+++++++|..++.+...+.+.+|+.++++ +|++++|.|+.++++.. ....+...++....|.+++...+++.
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~-~~~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVS-LLLIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHH-HHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 36789999999999999999999999999999998 79999999998888888 88889999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHH
Q 010561 129 DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSA 207 (507)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (507)
++.++..++.+......+++..++ ..+++|++..+.+++ +..+...+.++.+..++..+.......+++.|+.+..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999888 888889997776554 22367788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHH
Q 010561 208 YISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS 242 (507)
Q Consensus 208 ~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~l~ 242 (507)
..+.++.++|++++.+++..+ |..|+++++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~~--g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPRF--GLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHhh--hhhhHHHHH-HH
Confidence 999999999999999999865 888998888 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.36 E-value=5.7e-09 Score=105.58 Aligned_cols=420 Identities=13% Similarity=0.037 Sum_probs=247.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHH
Q 010561 59 RLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQ-VFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQ 136 (507)
Q Consensus 59 ~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~ 136 (507)
+-+.-+++.+++..+.+++.+.++-| ++++.+|..++=..+.. .+...-=-++-.+..+.-.....+++.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 44556778888888888887666666 89999998754444333 12223335666665433322211222333434333
Q ss_pred HHHHHHHHHHHHHHHHHH--hHHHH----HHHcCCC-HH---HHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHcCC
Q 010561 137 RSAVILTATGIPLMVIYI--FSKQI----LLLLGES-SA---IASAAAIFVFGLIPQIFAYAVNFP----IQKFLQAQSI 202 (507)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~--~~~~i----~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~~~~----~~~~l~~~~~ 202 (507)
....+..+.+++++.+.+ ...|. ..+.... +. ..+.....+.+...+.+.-.+... .+..+.-..|
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 333344443332222211 11111 1111111 11 111122223333344443333333 3444444555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh-cCCcc-----ch-hHHHHHHHHHHHHHHHHHHHHh--c-c--ccccccCCCCHH
Q 010561 203 ISPSAYISAATLVVHVLLSWVAIFK-LGWGL-----LG-ASLVLSLSWWIIVAAQFVYILL--S-E--RCKKTWTGFSLQ 270 (507)
Q Consensus 203 ~~~~~~~~i~~~~~~i~l~~~li~~-~~~g~-----~g-~~~a~~l~~~~~~~~~~~~~~~--~-~--~~~~~~~~~~~~ 270 (507)
.+.-........+++..+....... .+++. .+ +.++..++++...+........ . . ..+...++....
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 5555555555555554443333221 11111 11 2344555555544433222211 1 1 111222222221
Q ss_pred ---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 010561 271 ---AFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGL--LDNAEIVLDSLSICMTIAGWV-FMIAVGFNAAASVRVGNE 344 (507)
Q Consensus 271 ---~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~l~~~--~~~~~~~va~~~i~~~i~~~~-~~~~~~~~~~~~p~~~~~ 344 (507)
....-+++++........++.-.+...-+.++++. +.+.+ ..|.|++++++-+++ ..+...+-.+.-...++.
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~-~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~ 323 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFE-DQGVYALVSNYGSLVARLLFQPIEESSRLYFSKL 323 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHH-HhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 11134788999999999999999999999998888 55434 468999999998776 477788889888888888
Q ss_pred hccCCh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHH
Q 010561 345 LGAAHP---------KSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPV 415 (507)
Q Consensus 345 ~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 415 (507)
..+++. ++..+.+...++....+++.+.......++.+..++.++.-.-..+...++.++...++.+++.+
T Consensus 324 l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi 403 (549)
T PF04506_consen 324 LSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGI 403 (549)
T ss_pred hcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccH
Confidence 766533 34566677777777777777777777777778888766443333467889999999999999999
Q ss_pred HHHHHhhcCcchhHHHHHHHHH--HHhhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 010561 416 LSGVAVGCGWQAFVAYVNVGCY--YLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLR 480 (507)
Q Consensus 416 ~~~~l~~~g~~~~~~~~~~~~~--~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 480 (507)
...+.++....+.....+-.-. .++.+..++++... ++|..|..+|.++.+.++......+.+|
T Consensus 404 ~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 404 TEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888766544433221 24556677777554 6899999999999999999998877766
No 35
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=1.2e-07 Score=89.78 Aligned_cols=411 Identities=13% Similarity=0.075 Sum_probs=231.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC---cchH
Q 010561 56 NLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQK---YDML 131 (507)
Q Consensus 56 ~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~---~~~~ 131 (507)
.-.+.+.-.+..+++..+.++..+.++-| ++++.+|..++-..+.+ -. ..-++--..+......|..+ .++.
T Consensus 9 ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~-sT---iLFlsREair~A~l~~gs~~~d~~te~ 84 (530)
T KOG2864|consen 9 SSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQ-ST---ILFLSREAIRLAELRIGSEPADTWTEF 84 (530)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHH-HH---HHHhhHHHHHHHhccCCCCCCccHHHH
Confidence 34455566667777777777665555555 89999999877666555 11 11122222233344444433 3355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 010561 132 GVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSA--IASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYI 209 (507)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (507)
.+..+.+.-++....+.+.-+++ .+....++ ..+.-.....+...+.+.-.+...+.-..|..-+.+.-...
T Consensus 85 ~n~~wlS~~L~~~i~~~~i~~wl------~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~ 158 (530)
T KOG2864|consen 85 INLLWLSVPLQTAINVACIYFWL------GFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIA 158 (530)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHH------HHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 55555555555555544433321 11111111 11111122233333444444444444455555555555555
Q ss_pred HHHHHHHH-HHHHHHHHHhcC-CccchhHHHHHHHHHHHHHHHHHHHHhccc-cc---------cccCCCCHH--hhhhh
Q 010561 210 SAATLVVH-VLLSWVAIFKLG-WGLLGASLVLSLSWWIIVAAQFVYILLSER-CK---------KTWTGFSLQ--AFSGL 275 (507)
Q Consensus 210 ~i~~~~~~-i~l~~~li~~~~-~g~~g~~~a~~l~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~--~~~~~ 275 (507)
.-+..++. +....+++.+.+ +++.-.|+|.......-.+...+++.+.+. .+ ...++.... ..-.-
T Consensus 159 e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd 238 (530)
T KOG2864|consen 159 EGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFD 238 (530)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccccc
Confidence 55555555 333333333322 344444555554444333323333333222 01 011111111 00112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccCChh
Q 010561 276 WDFLKLSTASAVMLCLEIWYYQIIVLIAGLL---DNAEIVLDSLSICMTIAGWV-FMIAVGFNAAASVRVGNELGAAHPK 351 (507)
Q Consensus 276 ~~~l~~~~p~~~~~~~~~~~~~~~~~l~~~~---~~~~~~va~~~i~~~i~~~~-~~~~~~~~~~~~p~~~~~~g~~~~~ 351 (507)
++..+.........+.-++...-+.++++.. ..++ .|.|.++++.-++. .++...+-...-...++...+++.|
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~--QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe 316 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGD--QGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE 316 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcch--hhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence 4556666666666666666666666665533 2234 45999999987665 5778888999999999988888877
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchh
Q 010561 352 SCKFSVI---VVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAF 428 (507)
Q Consensus 352 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 428 (507)
+.|+... +.++....+++.......-.++.+..+++++.-.-..+...+++++...++.+++.+...+.++.+..+.
T Consensus 317 ~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 317 NVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 7776544 4444444444444444444556677777664322334557899999999999999999999999887765
Q ss_pred HHHHHH---HHHHHhhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 010561 429 VAYVNV---GCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRT 481 (507)
Q Consensus 429 ~~~~~~---~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 481 (507)
....+- +.. ++.+.+++++... +|..|...|..+.+.++-+....+.++.
T Consensus 397 i~~~n~~mlafS-viflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 397 IDKHNKFMLAFS-VIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHhcccchhHHH-HHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543332 222 4567788888655 7999999999999999888876666553
No 36
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.24 E-value=8.9e-10 Score=109.88 Aligned_cols=205 Identities=15% Similarity=0.160 Sum_probs=185.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccCCh
Q 010561 272 FSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGW-VFMIAVGFNAAASVRVGNELGAAHP 350 (507)
Q Consensus 272 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~-~~~~~~~~~~~~~p~~~~~~g~~~~ 350 (507)
..+.|++.+++.|..+....+.....++...++++|+- .+++.++++...+. .+.+..++..+..|.++|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~l--eLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNL--ELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccch--HHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 46789999999999999999999999999999999965 46688888887776 5688899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHH
Q 010561 351 KSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVA 430 (507)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 430 (507)
+......+++.......+++...... +.+++...+..|+++...+..+.++.....+-......+..++|+++++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~~-~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLIL-NSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999999988888776655 55999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 010561 431 YVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLR 480 (507)
Q Consensus 431 ~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 480 (507)
++..+.. ++.+++++++.+..++|..|+..+..+++.........+...
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~ 229 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVL 229 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhee
Confidence 9999886 899999999999999999999999999999988876665554
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.10 E-value=6e-07 Score=81.49 Aligned_cols=269 Identities=14% Similarity=0.053 Sum_probs=166.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-C-Ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 010561 52 IELKNLFRLAAPAILVYMLNNLVAMSTQIFCGH-L-GN-LELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY 128 (507)
Q Consensus 52 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-l-g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~ 128 (507)
...+++.++-.|..++.+...+...+.+.-++| - .+ +.+++|+++..+.- +...+...+-+....++ ++++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~l-f~~sp~~~~~~igl~~V-----~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLML-FFASPLSMFHHIGLVFV-----NSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHH-HHhChhhhhHHHHHHHh-----cchh
Confidence 457789999999999999999998888888887 3 23 45999999999999 67767777766644444 3333
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-H-HhHHHHH-HHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhH
Q 010561 129 DMLGVYLQRSAVILTATGIPLMVI-Y-IFSKQIL-LLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISP 205 (507)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (507)
++.+.... ....+...+.+..++ + .+...++ ..++.++++.+.+...+.++.+..++.++...+++++--++++..
T Consensus 82 srr~~vl~-~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SRRKAVLC-MAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 32222221 122222222222222 2 2333333 667889999999999999999999999999999999887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcc-chhH---HHHHHHHHHHH-HHHHHHHHh-ccccccccCCCCHHhhhhhHHHH
Q 010561 206 SAYISAATLVVHVLLSWVAIFKLGWGL-LGAS---LVLSLSWWIIV-AAQFVYILL-SERCKKTWTGFSLQAFSGLWDFL 279 (507)
Q Consensus 206 ~~~~~i~~~~~~i~l~~~li~~~~~g~-~g~~---~a~~l~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 279 (507)
....++...+..+++..++... .+.. ..+. ++...+..+-. .+.+-++.. +...+.. ..........+++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~-~~~~~~~~~tl~~~l 238 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQL-SGLEKGDSATLQRML 238 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-CCcccCCChhHHHHH
Confidence 7766666666666555555521 1111 1111 11122221111 111122211 1112211 122222335689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCch---HHHHHHHHHHHHHHHHHHHH
Q 010561 280 KLSTASAVMLCLEIWYYQIIVLIAGL-LDNA---EIVLDSLSICMTIAGWVFMI 329 (507)
Q Consensus 280 ~~~~p~~~~~~~~~~~~~~~~~l~~~-~~~~---~~~va~~~i~~~i~~~~~~~ 329 (507)
++.+|.+.....+...-.+.+.++++ ++.. ..++|...+.++.--..+..
T Consensus 239 ~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w 292 (345)
T PF07260_consen 239 KFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGW 292 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchh
Confidence 99999999999999998888988888 4433 24566666555544444433
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.47 E-value=3e-05 Score=78.92 Aligned_cols=203 Identities=14% Similarity=0.104 Sum_probs=161.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc--C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc--
Q 010561 54 LKNLFRLAAPAILVYMLNNLVAMSTQIFCGH--L-GNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY-- 128 (507)
Q Consensus 54 ~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~--l-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~-- 128 (507)
-+++++.+.....++++..+.+-.|++++.. + +.++-|.|+++.++-++..=.+..-+--+.-.+.++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 3678888999999999999999999999998 4 7889999999999999776677777888777778877665432
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Q 010561 129 -------DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQ 200 (507)
Q Consensus 129 -------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 200 (507)
+++.+.+...+.+...+++++..+ ...++.++.+++++.-....+...++..+..+++.+++++..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 346677788888888888777766 777777777776543333445677889999999999999999999987
Q ss_pred CChhHHH---HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 010561 201 SIISPSA---YISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLS 257 (507)
Q Consensus 201 ~~~~~~~---~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~~ 257 (507)
...+-.. .......++.+..++++... ++|..|..+|.++...+-.++.+.++++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655444 44445567777888888876 77999999999999999999888888763
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.41 E-value=4.5e-05 Score=64.03 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=72.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010561 177 VFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILL 256 (507)
Q Consensus 177 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~ 256 (507)
+++++++.++..+.......+++.||++..+..+.++.++|+++++++++.+ |..|+++|+.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~~--G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPRF--GIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999999999999999999999999999999999998755 99999999999999998888888877
Q ss_pred c
Q 010561 257 S 257 (507)
Q Consensus 257 ~ 257 (507)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 4
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.09 E-value=0.001 Score=62.08 Aligned_cols=186 Identities=20% Similarity=0.206 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccCChhHHHHHH
Q 010561 280 KLSTASAVMLCLEIWYYQIIVLIAG-LLDNAEIVLDSLSICMTIAGWVFMI-AVGFNAAASVRVGNELGAAHPKSCKFSV 357 (507)
Q Consensus 280 ~~~~p~~~~~~~~~~~~~~~~~l~~-~~~~~~~~va~~~i~~~i~~~~~~~-~~~~~~~~~p~~~~~~g~~~~~~~~~~~ 357 (507)
|-+......+........+...++. .+| +++.|.|+....+.++...+ ..|+.++..-..++...+ .+..++..
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~--~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLG--PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 3344445555555555444444444 444 34577999999998888766 778888887777766432 23333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHH
Q 010561 358 IVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCY 437 (507)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 437 (507)
........+.++.......+ ...+.. ++. . ...........++.........++++.++.+.....++...
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~-----~~~~~~-~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLI-----ASFFGN-PSL-S--LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHcCC-chH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333322222222 223333 321 1 11122222222577888888999999999998888888876
Q ss_pred HHhhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 010561 438 YLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLR 480 (507)
Q Consensus 438 ~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 480 (507)
+..+.+.+.+... ..+..+...+..++.++..++..+..+|
T Consensus 150 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 150 -LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred -HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333 2348888899999988887777666664
No 41
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.03 E-value=3.3e-05 Score=64.84 Aligned_cols=78 Identities=15% Similarity=0.230 Sum_probs=72.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 010561 400 SPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTL 479 (507)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 479 (507)
++++++..++.++.....+.+++.||+|..++.++.+. ++++++++++ .+++|..|+++++.+++.....+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999987 8999999998 56689999999999999999998888877
Q ss_pred h
Q 010561 480 R 480 (507)
Q Consensus 480 ~ 480 (507)
|
T Consensus 79 k 79 (146)
T PF14667_consen 79 K 79 (146)
T ss_pred H
Confidence 7
No 42
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.00 E-value=0.0042 Score=57.09 Aligned_cols=159 Identities=15% Similarity=0.129 Sum_probs=113.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChh
Q 010561 273 SGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGL-LDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPK 351 (507)
Q Consensus 273 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~l~~~-~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~ 351 (507)
....+++++-.|.++++....+.-++.+--+++ ..+..+.+|+|+++..+.-++..+...+.++....+.. +.+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~rs 82 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KRS 82 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hhh
Confidence 347789999999999999999998888877765 33444558999999999999999998888877666632 222
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhhh-hhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhH
Q 010561 352 SCKFSVIVVTSISLALSVI-LAILVLILRNV-MSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFV 429 (507)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 429 (507)
+ ++........+.+..+. ..+....++.. +..++.-|+++.+.+...+.++.+..+++++.....+++.=.+++...
T Consensus 83 r-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 83 R-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 2 22222222222222222 22222233333 456677789999999999999999999999999999988866777776
Q ss_pred HHHHHHHH
Q 010561 430 AYVNVGCY 437 (507)
Q Consensus 430 ~~~~~~~~ 437 (507)
...++...
T Consensus 162 ~~aSI~~v 169 (345)
T PF07260_consen 162 GSASIADV 169 (345)
T ss_pred ehHHHHHH
Confidence 66666554
No 43
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.99 E-value=0.015 Score=54.59 Aligned_cols=336 Identities=11% Similarity=0.019 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 010561 103 FAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIP 182 (507)
Q Consensus 103 ~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ 182 (507)
+...+..|+....++++|.+.=++|.+++...+.....+....+..+... +-...++.+.. |=...+.
T Consensus 72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~si~-----yk~l~~~ 139 (467)
T COG4267 72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYSIV-----YKILACA 139 (467)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchhHH-----HHHHHHH
Confidence 45567788899999999998888888777665555555554444444321 11112222111 1122334
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010561 183 QIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKK 262 (507)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 262 (507)
.+...+..-+.-.++.+.++.+.....-.++.++.+.+..++-. .++.|..++..++..+.......+..|.-+-+
T Consensus 140 ~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~- 215 (467)
T COG4267 140 LFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSS- 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc-
Confidence 44455556666778899999999988888888888888776654 38899999999998888877777776631111
Q ss_pred ccCCCCHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH------HHHHHHHHHHHHHHHHHH----
Q 010561 263 TWTGFSLQA-FSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVL------DSLSICMTIAGWVFMIAV---- 331 (507)
Q Consensus 263 ~~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~v------a~~~i~~~i~~~~~~~~~---- 331 (507)
+...++.-. .+....++-+ .......-.+++.+.=..++++.-. ..|.+..-...+...|..
T Consensus 216 ~~i~FdFL~~~~~y~SLllI-------g~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~ 288 (467)
T COG4267 216 RRIGFDFLLYRRKYPSLLLI-------GFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFL 288 (467)
T ss_pred cccceehhhhhhcchHHHHH-------HHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheee
Confidence 111111110 0112222222 2233333334443332222111110 123332222222222222
Q ss_pred -HHHHHHHHHHHhhhcc----C-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHH
Q 010561 332 -GFNAAASVRVGNELGA----A-------HPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAEL 399 (507)
Q Consensus 332 -~~~~~~~p~~~~~~g~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~ 399 (507)
.+.+...+..-+.+.+ + +.++.....+..+.-.+-+-...++.++.+++.+...++-++. ..+.
T Consensus 289 i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~l 364 (467)
T COG4267 289 ISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDL 364 (467)
T ss_pred eeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHH
Confidence 2223333333222211 1 2233334445555555666777888888899999888876532 2333
Q ss_pred hHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhHHHHHHHHHh-cCCCcchHHHHHHHH
Q 010561 400 SPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFK-FNLGTKGIWSGMIGG 466 (507)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~-~~~g~~g~~~a~~i~ 466 (507)
.++-.++.-.......+-++..-..+-+..+..+.+-. +.|-.+.++.... +++--.|...|..++
T Consensus 365 F~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i~l~lgp~~~g~gff~a~fl~ 431 (467)
T COG4267 365 FYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFL-ISNGILTFIFLELGPGYYGVGFFLASFLY 431 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHHHHHhCccceehHHHHHHHHH
Confidence 44444444443333333333333455555555554443 5556666655332 333344444444444
No 44
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=0.0015 Score=62.68 Aligned_cols=198 Identities=15% Similarity=0.121 Sum_probs=141.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhh--c-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcch---
Q 010561 57 LFRLAAPAILVYMLNNLVAMSTQIFCG--H-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDM--- 130 (507)
Q Consensus 57 i~~~~~p~~~~~~~~~~~~~i~~~~i~--~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~--- 130 (507)
..+......-+.++-.+.+--|.++++ . ++-++-|.|.++.+.-++..=.+...+--..-.+.+|...++++|+
T Consensus 241 ~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~ 320 (530)
T KOG2864|consen 241 LLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKK 320 (530)
T ss_pred HHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHH
Confidence 344444445556677778888888888 3 4667888888887777766666666777776677777666655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHH--
Q 010561 131 LGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSA-- 207 (507)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 207 (507)
+.+++...+.+...++++.+.+ ...+.+.+.+++++.-....+...+++.+..+++.+++++..++..+....+-.-
T Consensus 321 a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~ 400 (530)
T KOG2864|consen 321 AVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKH 400 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhc
Confidence 4566666777777777666655 5666777777776543334455678999999999999999999998866544332
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010561 208 -YISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILL 256 (507)
Q Consensus 208 -~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~l~~~~~~~~~~~~~~~ 256 (507)
....+..+..++++++++.++ |..|..+|.++...+-.+..+.++++
T Consensus 401 n~~mlafSviflilsylL~~~~--~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 401 NKFMLAFSVIFLILSYLLIRWF--GLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred ccchhHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677788899999887 66999999998888887777666665
No 45
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.66 E-value=0.019 Score=52.78 Aligned_cols=162 Identities=20% Similarity=0.283 Sum_probs=100.6
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010561 300 VLIAGLLDNAEIVLDSLSICMTIAGWVFMI-AVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLIL 378 (507)
Q Consensus 300 ~~l~~~~~~~~~~va~~~i~~~i~~~~~~~-~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (507)
.++...++ .++.|.|+....+..+...+ ..++.+...- ..++|+++.++..+.......+..++..++.
T Consensus 9 ~~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (251)
T PF13440_consen 9 ILLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILA--- 78 (251)
T ss_pred HHHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34445555 33467999988888887766 4444444322 2345566666666666655444444443332
Q ss_pred hhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhHHHHHHHHHhcCCCcch
Q 010561 379 RNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKG 458 (507)
Q Consensus 379 ~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g 458 (507)
..+...+ ++++ ...++....+..++..+.......+++.+|.+.......... +..+.+...+... ..+..+
T Consensus 79 -~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~ 150 (251)
T PF13440_consen 79 -ILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLYL-GLNLWS 150 (251)
T ss_pred -HHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHHH-HhhHHH
Confidence 2222233 3332 233456666777788899999999999999999888888876 4343333333322 237888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010561 459 IWSGMIGGTLIQTIILVYVTL 479 (507)
Q Consensus 459 ~~~a~~i~~~~~~~~~~~~~~ 479 (507)
..++..++.++..++.....+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 151 ILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 888888888887776555333
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=84.46 E-value=41 Score=32.54 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHH
Q 010561 328 MIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSV 407 (507)
Q Consensus 328 ~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~ 407 (507)
.+..+++....-.+++..=+||.+++...+.-........+..++..+ .+.+++ +..... ...+...
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~v---------f~~~~~--~si~yk--~l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIV---------FFVNNQ--YSIVYK--ILACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh---------hhhcCc--hhHHHH--HHHHHHH
Confidence 345555666666667766667777766666655555555544444311 122222 222222 2334455
Q ss_pred HHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 010561 408 ILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLR 480 (507)
Q Consensus 408 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 480 (507)
+..+...+...++.+++|.+.......++. ++.+.++.++-. .+..|...+..++..+...+...+..+
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 667778888889999999998777666664 677777776643 489999999999988877776655544
No 47
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=76.22 E-value=84 Score=31.04 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=32.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 010561 349 HPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAF 386 (507)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 386 (507)
+.++.++..+++.+++........+++.+..-|+...-
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~ 126 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQV 126 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999988888877643
No 48
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=60.43 E-value=55 Score=24.02 Aligned_cols=40 Identities=13% Similarity=0.018 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHH
Q 010561 331 VGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVI 370 (507)
Q Consensus 331 ~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 370 (507)
.-++......+.+.+.+||++++++.-+++.+++.+-.+.
T Consensus 34 Gi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 34 GIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3344445567778888999999999999998888655444
No 49
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=58.01 E-value=1.6e+02 Score=27.30 Aligned_cols=32 Identities=3% Similarity=-0.095 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCChhHHHHHH
Q 010561 326 VFMIAVGFNAAASVRVGNELGAAHPKSCKFSV 357 (507)
Q Consensus 326 ~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~ 357 (507)
...+...++.......-+...++|.++.++..
T Consensus 109 l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~ 140 (265)
T TIGR00822 109 LTIFVRTITVLFQHAADKAAKEANTAAISRLH 140 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHH
Confidence 34445555666666666677778888776543
No 50
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=55.80 E-value=2.5e+02 Score=28.88 Aligned_cols=63 Identities=11% Similarity=-0.007 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHhc----CCccchhHHHHHHHHHHHHHHH
Q 010561 188 AVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKL----GWGLLGASLVLSLSWWIIVAAQ 250 (507)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~----~~g~~g~~~a~~l~~~~~~~~~ 250 (507)
+...++...++-.++.....+......+.++...++-...+ ..+..|--|..++.-+++....
T Consensus 154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~g 220 (495)
T KOG2533|consen 154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLG 220 (495)
T ss_pred HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHH
Confidence 34455666777777777666666555555555544333211 1244444444444444444443
No 51
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=50.72 E-value=2e+02 Score=26.34 Aligned_cols=100 Identities=14% Similarity=-0.011 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHH
Q 010561 328 MIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSV 407 (507)
Q Consensus 328 ~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~ 407 (507)
.+...+-..+....-+--..+..+..++....+..++...++.=++..+.+++ ..++.++.+....+.. .-++.-..
T Consensus 89 fflL~lEvSvvvFgL~fghlds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg~-~fW~~~s~ 165 (261)
T PF10160_consen 89 FFLLSLEVSVVVFGLQFGHLDSRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGGW-GFWFISSL 165 (261)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCCe-ehHHHHHH
Confidence 33444444443333222222345555555555555555555555555555555 5666665555554433 33444444
Q ss_pred HHhhHHHHHHHHHhhcCcchhHH
Q 010561 408 ILNGIQPVLSGVAVGCGWQAFVA 430 (507)
Q Consensus 408 ~~~~~~~~~~~~l~~~g~~~~~~ 430 (507)
++...+......-....|.+.|.
T Consensus 166 ~f~~vY~~I~~L~~~r~r~~LPa 188 (261)
T PF10160_consen 166 VFALVYGFILILTPLRWRDRLPA 188 (261)
T ss_pred HHHHHHHHHHHHHhccccccCCC
Confidence 44444444444455555555543
No 52
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=47.38 E-value=2.4e+02 Score=26.21 Aligned_cols=33 Identities=6% Similarity=-0.118 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCChhHHHHHHH
Q 010561 326 VFMIAVGFNAAASVRVGNELGAAHPKSCKFSVI 358 (507)
Q Consensus 326 ~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~ 358 (507)
...+...++....+..-+...++|.++.++...
T Consensus 110 l~~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~ 142 (267)
T PRK09757 110 VILFFYSAFSLFMTKADKCAKEADTAAFSRLNW 142 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 344555566666677777777788887765433
No 53
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=47.15 E-value=3.2e+02 Score=27.71 Aligned_cols=33 Identities=18% Similarity=-0.078 Sum_probs=14.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Q 010561 456 TKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEK 489 (507)
Q Consensus 456 ~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~ 489 (507)
..++++...+..++..++ ..+.+...|.++..+
T Consensus 411 y~~~f~~~~~~~~i~~~~-~~~~~~~~~~~~~~~ 443 (476)
T PLN00028 411 TETGISLMGVMIIACTLP-VAFIHFPQWGGMFFG 443 (476)
T ss_pred HhhHHHHHHHHHHHHHHH-HHheeccchhhhhcC
Confidence 444444444444443333 444555555554333
No 54
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=45.88 E-value=1.6e+02 Score=23.82 Aligned_cols=19 Identities=16% Similarity=0.632 Sum_probs=11.2
Q ss_pred HHHHHhcChHHHHHHHHhh
Q 010561 475 VYVTLRTDWNKEVEKARNR 493 (507)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~ 493 (507)
.|......+|++++|..||
T Consensus 117 Iw~~~y~~~k~~i~kiN~k 135 (136)
T PF11457_consen 117 IWLIFYLYWKKDIKKINEK 135 (136)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4555555667776666554
No 55
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=43.36 E-value=2.4e+02 Score=27.01 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=39.2
Q ss_pred HHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhHHHHHHHHHh-------cCCCc-chHHHHHHHHHHHHHHHHHHH
Q 010561 406 SVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFK-------FNLGT-KGIWSGMIGGTLIQTIILVYV 477 (507)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~-------~~~g~-~g~~~a~~i~~~~~~~~~~~~ 477 (507)
......+.....+.. +.+.....-..++++ ++.+|..++-+.+ |.... +|-|++..+. ++.+++.+++
T Consensus 240 ~~~l~~l~d~~~s~i-s~~~N~imk~LTi~s--~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m-~~~~~~~~~~ 315 (322)
T COG0598 240 RERLSSLLDAYLSLI-NNNQNEIMKILTIVS--TIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILM-LLLALLLYLY 315 (322)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--HHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHH-HHHHHHHHHH
Confidence 444455555555544 344555555566666 3556676766543 11122 2445555444 4444445777
Q ss_pred HHhcCh
Q 010561 478 TLRTDW 483 (507)
Q Consensus 478 ~~~~~~ 483 (507)
++|++|
T Consensus 316 frrk~W 321 (322)
T COG0598 316 FRRKGW 321 (322)
T ss_pred HHhcCc
Confidence 888777
No 56
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=41.15 E-value=3.9e+02 Score=26.90 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 010561 310 EIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAI 373 (507)
Q Consensus 310 ~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (507)
-.-++.|+...... .....|.+++...+.++.+.-+.....-+.+...+..+..
T Consensus 37 Ll~~siygl~~~~~----------~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~ 90 (432)
T PF06963_consen 37 LLPVSIYGLVRSLS----------AILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFL 90 (432)
T ss_pred cHHHHHHHHHHHHH----------HHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34456777765544 3456788899988777666555554444555544443333
No 57
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=40.19 E-value=85 Score=29.92 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=29.9
Q ss_pred cCcchhHHHHHHHHHHHhhHHHHHHHHHh-------cCCCcchHHHHHHHHHHHHHHHHHHHHHhcCh
Q 010561 423 CGWQAFVAYVNVGCYYLIGIPIGCLLGFK-------FNLGTKGIWSGMIGGTLIQTIILVYVTLRTDW 483 (507)
Q Consensus 423 ~g~~~~~~~~~~~~~~~~~i~l~~~l~~~-------~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 483 (507)
.+..+..-..++++. +..|..++-+.+ |.......+.......++..+..+++++|++|
T Consensus 252 ~~~N~~mk~LTvvt~--IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 252 NKMNEIMKILTVVST--IFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344455556666663 456666665543 11111122333333334444555777888877
No 58
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=39.04 E-value=2.7e+02 Score=27.32 Aligned_cols=18 Identities=6% Similarity=0.045 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010561 359 VVTSISLALSVILAILVL 376 (507)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~ 376 (507)
..-++.+-+.+|+.+.--
T Consensus 32 ~ls~lv~~~~lP~liF~~ 49 (385)
T PF03547_consen 32 GLSKLVFNVFLPALIFSS 49 (385)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555444433
No 59
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=38.26 E-value=2.3e+02 Score=28.85 Aligned_cols=80 Identities=23% Similarity=0.187 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHH--HHhhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHH
Q 010561 400 SPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCY--YLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYV 477 (507)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~ 477 (507)
+.-++.+..+-++..+.....--.+|.+.....+.... -++..|++=.+.. ..+|...+.+...+..++..+++.++
T Consensus 137 lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~-s~~GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 137 LQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE-SSLGWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred HhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-cCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333445454444333322 1344444444432 24799999999999888888876666
Q ss_pred HHh
Q 010561 478 TLR 480 (507)
Q Consensus 478 ~~~ 480 (507)
++.
T Consensus 216 ~~d 218 (466)
T KOG2532|consen 216 YSD 218 (466)
T ss_pred hcC
Confidence 654
No 60
>PRK09546 zntB zinc transporter; Reviewed
Probab=37.91 E-value=3.7e+02 Score=25.71 Aligned_cols=51 Identities=14% Similarity=0.030 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHh-------cCCCcchHHHHHHHHHHHHHHHHHHHHHhcCh
Q 010561 431 YVNVGCYYLIGIPIGCLLGFK-------FNLGTKGIWSGMIGGTLIQTIILVYVTLRTDW 483 (507)
Q Consensus 431 ~~~~~~~~~~~i~l~~~l~~~-------~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 483 (507)
..++++. +.+|+.++-+.+ |..+....++..++..++..+..+++++|++|
T Consensus 266 ~Ltilt~--IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMAM--VFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHH--HHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4555553 455777765543 11111122333333344444455677888777
No 61
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=37.10 E-value=4.6e+02 Score=26.59 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010561 49 ATWIELKNLFRLAAPAILVYMLNNLVAM 76 (507)
Q Consensus 49 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~ 76 (507)
.+++.+|.++|-++|..+..++..+-..
T Consensus 11 ld~~~~k~~~k~~i~~~i~~~l~~i~~~ 38 (459)
T PF10337_consen 11 LDRRSLKIMFKCWIAPWIALILCQIPPV 38 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 4678899999999999988877655443
No 62
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=36.31 E-value=1e+02 Score=19.57 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 010561 459 IWSGMIGGTLIQTII 473 (507)
Q Consensus 459 ~~~a~~i~~~~~~~~ 473 (507)
+|.|+.++.++...+
T Consensus 8 VW~sYg~t~l~l~~l 22 (45)
T TIGR03141 8 VWLAYGITALVLAGL 22 (45)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666655554433
No 63
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=34.22 E-value=5.2e+02 Score=26.32 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=31.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-C--ChhHHHHHHHHHHHHH
Q 010561 53 ELKNLFRLAAPAILVYMLNNLVAMSTQIFCGH-L--GNLELAAVSLGNTGIQ 101 (507)
Q Consensus 53 ~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-l--g~~~~~~~~~~~~~~~ 101 (507)
..|+-+.++.+-+.+++.....+.-...+-.. . ++...|..=...++..
T Consensus 10 s~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiD 61 (467)
T COG2211 10 SLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIID 61 (467)
T ss_pred cHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHH
Confidence 45677888888888887777666666666554 3 4444555444444444
No 64
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=33.35 E-value=55 Score=28.09 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=24.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhh
Q 010561 455 GTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKARNRMD 495 (507)
Q Consensus 455 g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (507)
|+.+...+..+-.++.++++++++.+..|++...-.++|.+
T Consensus 12 ~~~~~~~~~~~~~~i~Flil~~lL~~~l~kpi~~~l~~R~~ 52 (175)
T PRK14472 12 GLLSPNPGLIFWTAVTFVIVLLILKKIAWGPILSALEEREK 52 (175)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45555556666666666676777777667666554444443
No 65
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=33.23 E-value=1.5e+02 Score=28.26 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=28.5
Q ss_pred cCcchhHHHHHHHHHHHhhHHHHHHHHHh-------cCCCcchHHHHHHHHHHHHHHHHHHHHHhcCh
Q 010561 423 CGWQAFVAYVNVGCYYLIGIPIGCLLGFK-------FNLGTKGIWSGMIGGTLIQTIILVYVTLRTDW 483 (507)
Q Consensus 423 ~g~~~~~~~~~~~~~~~~~i~l~~~l~~~-------~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 483 (507)
.+.....-..++++ ++.+|..++-+.+ |.....-.++..+...++.+...+++++|++|
T Consensus 250 ~~~N~~mk~lTv~s--~if~pptliagiyGMNf~~mP~~~~~~g~~~~l~~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 250 IEQNRIIKIFSVVS--VVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIILMILAGLAPYLYFKRKNW 315 (316)
T ss_pred hHHHHHHHHHHHHH--HHHHHHHHHHhhcccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34445555556665 3456666665443 11111112233333334444445677888777
No 66
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=32.72 E-value=4.4e+02 Score=25.05 Aligned_cols=16 Identities=6% Similarity=-0.022 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhhccC
Q 010561 333 FNAAASVRVGNELGAA 348 (507)
Q Consensus 333 ~~~~~~p~~~~~~g~~ 348 (507)
+.......+++.+|+|
T Consensus 45 ~~~~~~g~l~dr~g~r 60 (379)
T TIGR00881 45 ISKFVMGSVSDRSNPR 60 (379)
T ss_pred hhhhhhhHHHHhhCCe
Confidence 3333444555555543
No 67
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=32.63 E-value=1.3e+02 Score=19.07 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhcChHHHHHH
Q 010561 459 IWSGMIGGTLIQTIILVYVT-LRTDWNKEVEK 489 (507)
Q Consensus 459 ~~~a~~i~~~~~~~~~~~~~-~~~~~~~~~~~ 489 (507)
+|.|+.++.++...+..... .+++.++.+.+
T Consensus 7 VW~sYg~t~~~l~~l~~~~~~~~r~~~~~l~~ 38 (46)
T PF04995_consen 7 VWSSYGVTALVLAGLIVWSLRRRRRLRKELKR 38 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665554444333322 23334444443
No 68
>TIGR03727 urea_t_UrtC_arc urea ABC transporter, permease protein UrtC, archaeal type. Members of this protein family are ABC transporter permease subunits restricted to the Archaea. Several lines of evidence suggest this protein is functionally analogous, as well as homologous, to the UrtC subunit of the Corynebacterium glutamicum urea transporter. All members of the operon show sequence similarity to urea transport subunits, the gene is located near the urease structural subunits in two of three species, and partial phylogenetic profiling identifies this permease subunit as closely matching the profile of urea utilization.
Probab=31.83 E-value=5e+02 Score=25.41 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhhhhcccchhhhcC
Q 010561 484 NKEVEKARNRMDEWGDKTELLLKE 507 (507)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~ 507 (507)
++..+|+++..+++.+.+.|...|
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~ 364 (364)
T TIGR03727 341 EHGRDTIQSRADSETPGSSEVMRE 364 (364)
T ss_pred HHHHhccchhhhhcCCCccccccC
Confidence 345556667777777777776655
No 69
>PRK01637 hypothetical protein; Reviewed
Probab=30.20 E-value=4.6e+02 Score=24.52 Aligned_cols=10 Identities=0% Similarity=-0.107 Sum_probs=4.3
Q ss_pred HHHHhhhccC
Q 010561 339 VRVGNELGAA 348 (507)
Q Consensus 339 p~~~~~~g~~ 348 (507)
--+.+.++.+
T Consensus 114 ~a~N~i~~~~ 123 (286)
T PRK01637 114 KALNTIWRSK 123 (286)
T ss_pred HHHHHHhCCC
Confidence 3334445444
No 70
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=30.06 E-value=1.2e+02 Score=25.51 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhh
Q 010561 463 MIGGTLIQTIILVYVTLRTDWNKEVEKARNRMD 495 (507)
Q Consensus 463 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (507)
+.+...+.++++++++.+.-|++...-.++|.+
T Consensus 24 t~~~~~inFliL~~lL~k~l~~Pi~~~l~~R~~ 56 (156)
T CHL00118 24 TLPLMALQFLLLMVLLNIILYKPLLKVLDERKE 56 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666777677666554444444
No 71
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=29.08 E-value=94 Score=22.71 Aligned_cols=19 Identities=5% Similarity=0.211 Sum_probs=3.5
Q ss_pred HHHHhcChHHHHHHHHhhh
Q 010561 476 YVTLRTDWNKEVEKARNRM 494 (507)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~ 494 (507)
..++|.+.++++++..+|.
T Consensus 28 ieYrk~~rqrkId~li~RI 46 (81)
T PF00558_consen 28 IEYRKIKRQRKIDRLIERI 46 (81)
T ss_dssp -----------CHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 3445555555555543333
No 72
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=28.61 E-value=57 Score=21.82 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 010561 460 WSGMIGGTLIQTIILVYVTLR 480 (507)
Q Consensus 460 ~~a~~i~~~~~~~~~~~~~~~ 480 (507)
.+..+++-++..+..+-+.-+
T Consensus 8 IIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 8 IIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHHHHHHHhHHHHHHHhcc
Confidence 334444545555554444444
No 73
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=28.25 E-value=92 Score=25.62 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhh
Q 010561 462 GMIGGTLIQTIILVYVTLRTDWNKEVEKARNRMD 495 (507)
Q Consensus 462 a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (507)
.+.+..++.++++++++.+.-|++...-.++|.+
T Consensus 8 ~~~~~qli~Flil~~~l~kfl~kPi~~~l~~R~~ 41 (141)
T PRK08476 8 YLMLATFVVFLLLIVILNSWLYKPLLKFMDNRNA 41 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666676777777777666554444443
No 74
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=27.77 E-value=3.5e+02 Score=24.23 Aligned_cols=38 Identities=8% Similarity=0.085 Sum_probs=19.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcC
Q 010561 127 KYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLG 164 (507)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 164 (507)
+++.....+..++...+++-++.+++..+..++..+++
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~ 179 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 34444445555554444444444444555666666665
No 75
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=26.94 E-value=5.9e+02 Score=24.64 Aligned_cols=29 Identities=14% Similarity=0.033 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010561 350 PKSCKFSVIVVTSISLALSVILAILVLIL 378 (507)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (507)
.++..+..++.+++.....+|......+.
T Consensus 118 ~~~~~~~~r~~l~~~~~~~~pl~~~~~~~ 146 (340)
T PF12794_consen 118 PKERVQRLRRQLRWLIWVLVPLLFISIFA 146 (340)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556667777777766665555443
No 76
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=26.24 E-value=1.6e+02 Score=25.07 Aligned_cols=34 Identities=15% Similarity=-0.015 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhh
Q 010561 462 GMIGGTLIQTIILVYVTLRTDWNKEVEKARNRMD 495 (507)
Q Consensus 462 a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (507)
...+..++.++++++++++.-|++..+-.++|.+
T Consensus 23 ~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~~ 56 (167)
T PRK08475 23 YDIIERTINFLIFVGILWYFAAKPLKNFYKSRIN 56 (167)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666666666666554444443
No 77
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=25.52 E-value=1.2e+02 Score=25.35 Aligned_cols=36 Identities=17% Similarity=-0.027 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhhh
Q 010561 461 SGMIGGTLIQTIILVYVTLRTDWNKEVEKARNRMDE 496 (507)
Q Consensus 461 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (507)
.+..+-.++.+++++++++|.-|++...-.++|.+.
T Consensus 10 ~sqifw~iI~FlILy~ll~kf~~ppI~~iLe~R~~~ 45 (155)
T PRK06569 10 YSQIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQTN 45 (155)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455666667777777777777777766655544443
No 78
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=25.46 E-value=3.6e+02 Score=21.66 Aligned_cols=29 Identities=0% Similarity=0.037 Sum_probs=22.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 010561 56 NLFRLAAPAILVYMLNNLVAMSTQIFCGH 84 (507)
Q Consensus 56 ~i~~~~~p~~~~~~~~~~~~~i~~~~i~~ 84 (507)
.+.+-+++..+..++..+.+.++..+.-+
T Consensus 50 s~~ke~~~L~v~~vv~V~s~v~N~VL~K~ 78 (130)
T PF08627_consen 50 SYSKENFKLLVYVVVYVVSGVINRVLYKK 78 (130)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778888888888888888888776
No 79
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=25.30 E-value=86 Score=27.75 Aligned_cols=34 Identities=12% Similarity=-0.089 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhh
Q 010561 462 GMIGGTLIQTIILVYVTLRTDWNKEVEKARNRMD 495 (507)
Q Consensus 462 a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (507)
+.++-.++.++++++++.|..|++...-.++|.+
T Consensus 54 ~~l~w~~I~FliL~~lL~k~~~~pI~~vLe~R~~ 87 (204)
T PRK09174 54 SQLLWLAITFGLFYLFMSRVILPRIGGIIETRRD 87 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666677777777666554444444
No 80
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=23.71 E-value=52 Score=21.52 Aligned_cols=15 Identities=7% Similarity=0.073 Sum_probs=8.7
Q ss_pred HHHHHhcChHHHHHH
Q 010561 475 VYVTLRTDWNKEVEK 489 (507)
Q Consensus 475 ~~~~~~~~~~~~~~~ 489 (507)
+-..++..+|...+.
T Consensus 21 ~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 21 CTTLKAYGYKHTVDP 35 (50)
T ss_pred HHHhhccccccccCC
Confidence 344566667766544
No 81
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=23.11 E-value=3.1e+02 Score=21.76 Aligned_cols=11 Identities=0% Similarity=-0.312 Sum_probs=5.4
Q ss_pred hhHHHHHHHHH
Q 010561 427 AFVAYVNVGCY 437 (507)
Q Consensus 427 ~~~~~~~~~~~ 437 (507)
|..+...+.+.
T Consensus 41 R~slL~Gi~~G 51 (118)
T PF12597_consen 41 RDSLLYGIAGG 51 (118)
T ss_pred HHHHHHHHHHH
Confidence 44455555554
No 82
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=23.07 E-value=1.1e+02 Score=26.49 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhh
Q 010561 463 MIGGTLIQTIILVYVTLRTDWNKEVEKARNRMD 495 (507)
Q Consensus 463 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (507)
..+-.++.++++++++.|..|++...-.++|.+
T Consensus 33 q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~ 65 (181)
T PRK13454 33 QIFWLLVTLVAIYFVLTRVALPRIGAVLAERQG 65 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666666655554444444
No 83
>COG5393 Predicted membrane protein [Function unknown]
Probab=22.26 E-value=4e+02 Score=21.03 Aligned_cols=30 Identities=3% Similarity=-0.014 Sum_probs=18.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Q 010561 453 NLGTKGIWSGMIGGTLIQTIILVYVTLRTD 482 (507)
Q Consensus 453 ~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 482 (507)
.+-+......+++-+.+..+.+.|.+++..
T Consensus 79 tyRl~a~~a~~~vl~vl~~i~ciW~lrks~ 108 (131)
T COG5393 79 TYRLNAMIATTAVLLVLALIGCIWTLRKSR 108 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666667666643
No 84
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=21.89 E-value=1.3e+03 Score=26.74 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010561 350 PKSCKFSVIVVTSISLALSVILAILVLI 377 (507)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (507)
.+.+++ .++-++....+.+|+..+..+
T Consensus 592 ~~~v~~-~~~~~~~~~~~~~pl~~~~~~ 618 (1109)
T PRK10929 592 RERVAR-AMRYYLLSIGLIVPLIMALIT 618 (1109)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 334433 333455555566665554433
No 85
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=21.14 E-value=1.2e+02 Score=26.03 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhh
Q 010561 462 GMIGGTLIQTIILVYVTLRTDWNKEVEKARNRM 494 (507)
Q Consensus 462 a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
.+.+..++.++++++++.+..|++...-.++|.
T Consensus 19 ~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~ 51 (173)
T PRK13453 19 GTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRE 51 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666666655554433333
No 86
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=20.59 E-value=1.5e+02 Score=25.37 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhh
Q 010561 462 GMIGGTLIQTIILVYVTLRTDWNKEVEKARNRM 494 (507)
Q Consensus 462 a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
+.++-.++.++++++.+++.-|++...-.++|.
T Consensus 17 ~~~~~~~i~Flil~~iL~~~~~kpi~~~l~~R~ 49 (173)
T PRK13460 17 GLVVWTLVTFLVVVLVLKKFAWDVILKALDERA 49 (173)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444555555566666666655544433333
No 87
>PTZ00370 STEVOR; Provisional
Probab=20.44 E-value=2.1e+02 Score=26.58 Aligned_cols=17 Identities=24% Similarity=0.726 Sum_probs=8.6
Q ss_pred HHHHHHHh--cChHHHHHH
Q 010561 473 ILVYVTLR--TDWNKEVEK 489 (507)
Q Consensus 473 ~~~~~~~~--~~~~~~~~~ 489 (507)
+.+|+++| ..||++..|
T Consensus 274 lYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 274 LYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred HHHHHHHhhcchhHHHHHh
Confidence 33344444 348776543
Done!