Query 010561
Match_columns 507
No_of_seqs 265 out of 2166
Neff 10.3
Searched_HMMs 13730
Date Mon Mar 25 09:27:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010561.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010561hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 65.8 42 0.0031 29.3 37.4 27 452-478 405-431 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 51.0 75 0.0054 27.5 20.6 26 230-255 407-432 (447)
3 d2oara1 f.16.1.1 (A:10-118) Ga 10.9 63 0.0046 22.4 2.2 17 457-473 60-76 (109)
4 d1pv7a_ f.38.1.2 (A:) Lactose 10.3 4E+02 0.029 21.5 34.9 47 55-101 7-56 (417)
5 d1m56d_ f.23.8.1 (D:) Bacteria 7.8 1.9E+02 0.014 15.8 4.3 34 345-378 4-37 (42)
6 d1lghb_ f.3.1.1 (B:) Light-har 5.7 2.3E+02 0.017 15.6 2.5 31 350-380 11-41 (43)
7 d2iuba2 f.17.3.1 (A:286-349) M 5.3 2.5E+02 0.018 16.6 2.9 10 440-449 15-24 (64)
8 d1pv7a_ f.38.1.2 (A:) Lactose 5.3 6.8E+02 0.05 19.8 18.9 6 231-236 377-382 (417)
9 d1nkzb_ f.3.1.1 (B:) Light-har 4.2 3.2E+02 0.024 14.5 4.3 34 349-382 7-40 (41)
10 d1qled_ f.23.8.1 (D:) Bacteria 3.4 4.1E+02 0.03 14.4 5.0 33 346-378 6-38 (43)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=65.82 E-value=42 Score=29.33 Aligned_cols=27 Identities=33% Similarity=0.532 Sum_probs=15.2
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHH
Q 010561 452 FNLGTKGIWSGMIGGTLIQTIILVYVT 478 (507)
Q Consensus 452 ~~~g~~g~~~a~~i~~~~~~~~~~~~~ 478 (507)
..+|..+..+......++..++.....
T Consensus 405 ~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 405 DFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777766666655555555444333
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=50.96 E-value=75 Score=27.51 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=12.8
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHH
Q 010561 230 WGLLGASLVLSLSWWIIVAAQFVYIL 255 (507)
Q Consensus 230 ~g~~g~~~a~~l~~~~~~~~~~~~~~ 255 (507)
.|..+..+......++..++......
T Consensus 407 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 407 FGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555545555444444433
No 3
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.86 E-value=63 Score=22.35 Aligned_cols=17 Identities=0% Similarity=-0.097 Sum_probs=9.1
Q ss_pred chHHHHHHHHHHHHHHH
Q 010561 457 KGIWSGMIGGTLIQTII 473 (507)
Q Consensus 457 ~g~~~a~~i~~~~~~~~ 473 (507)
+|.++...+..++.++.
T Consensus 60 ~G~fi~a~InFlIiA~v 76 (109)
T d2oara1 60 LNVLLSAAINFFLIAFA 76 (109)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35556665655554443
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=10.25 E-value=4e+02 Score=21.47 Aligned_cols=47 Identities=4% Similarity=0.009 Sum_probs=23.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhh-c--CChhHHHHHHHHHHHHH
Q 010561 55 KNLFRLAAPAILVYMLNNLVAMSTQIFCG-H--LGNLELAAVSLGNTGIQ 101 (507)
Q Consensus 55 ~~i~~~~~p~~~~~~~~~~~~~i~~~~i~-~--lg~~~~~~~~~~~~~~~ 101 (507)
|+.+.++.-.....+...........++. . +++.++|....+..+..
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~ 56 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFS 56 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 44555555555555444444333333333 2 45666666554444444
No 5
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.85 E-value=1.9e+02 Score=15.79 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=19.4
Q ss_pred hccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010561 345 LGAAHPKSCKFSVIVVTSISLALSVILAILVLIL 378 (507)
Q Consensus 345 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (507)
.|+-|...-.|.+.-.+++..-.++.+.++++++
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i~~lifl 37 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIVAALIFL 37 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555656666666666666666555555544443
No 6
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=5.66 E-value=2.3e+02 Score=15.60 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010561 350 PKSCKFSVIVVTSISLALSVILAILVLILRN 380 (507)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (507)
.++..+.+..++..-..++++.=++.+...+
T Consensus 11 A~EfH~~~~~g~~~F~~iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 11 AIAVHDQFKTTFSAFIILAAVAHVLVWVWKP 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556666666666666666655555554443
No 7
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.34 E-value=2.5e+02 Score=16.62 Aligned_cols=10 Identities=30% Similarity=0.600 Sum_probs=4.9
Q ss_pred hhHHHHHHHH
Q 010561 440 IGIPIGCLLG 449 (507)
Q Consensus 440 ~~i~l~~~l~ 449 (507)
+.+|+.++-+
T Consensus 15 iflP~t~i~g 24 (64)
T d2iuba2 15 IFMPLTFIAG 24 (64)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 4455555543
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.28 E-value=6.8e+02 Score=19.80 Aligned_cols=6 Identities=50% Similarity=0.783 Sum_probs=2.4
Q ss_pred ccchhH
Q 010561 231 GLLGAS 236 (507)
Q Consensus 231 g~~g~~ 236 (507)
|.....
T Consensus 377 g~~~~~ 382 (417)
T d1pv7a_ 377 GFQGAY 382 (417)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 443333
No 9
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=4.15 E-value=3.2e+02 Score=14.54 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=24.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010561 349 HPKSCKFSVIVVTSISLALSVILAILVLILRNVM 382 (507)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 382 (507)
+.|+..+.+-.+.+.-..++++.=++.+...+|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 3577888888888888888777766666665553
No 10
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=3.38 E-value=4.1e+02 Score=14.45 Aligned_cols=33 Identities=9% Similarity=0.087 Sum_probs=18.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010561 346 GAAHPKSCKFSVIVVTSISLALSVILAILVLIL 378 (507)
Q Consensus 346 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (507)
|+-|...-.+.+.--+++..-.++.+.++++++
T Consensus 6 G~MDi~vQEkTF~gFi~~~t~~~i~~i~~lifl 38 (43)
T d1qled_ 6 GEMDIRHQQATFAGFIKGATWVSILSIAVLVFL 38 (43)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666665555554444443
Done!